BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021567
(311 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CKK|A Chain A, Crystal Structure Of Human Methyltransferase-Like Protein
1
Length = 235
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 76/186 (40%), Gaps = 34/186 (18%)
Query: 112 PFDIDWSAAY-------------HDP---------AQPLVVDIGSGNGLFLLGMARKRKD 149
P ++DWS Y DP AQ DIG G G L+ ++ D
Sbjct: 11 PEEMDWSELYPEFFAPLTQNQSHDDPKDKKEKRAQAQVEFADIGCGYGGLLVELSPLFPD 70
Query: 150 LNFLGLELVTHCRDSLQ----------LSGITNGYFIATNATSTFRSIVASYPGKLILVS 199
LGLE+ D +Q G N + +NA + Y G+L +
Sbjct: 71 TLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFF--YKGQLTKMF 128
Query: 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK 259
P+P F R +H+WR++ +L+ + +L G V+ +D+ E+ M F E+ +
Sbjct: 129 FLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHPLFE 188
Query: 260 LVLVQD 265
V ++D
Sbjct: 189 RVPLED 194
>pdb|2FCA|A Chain A, The Structure Of Bstrmb
pdb|2FCA|B Chain B, The Structure Of Bstrmb
Length = 213
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 80/185 (43%), Gaps = 26/185 (14%)
Query: 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL--------VTHCRDSLQLSGITNGYFIA 177
P+ +++G+G G F+ GMA++ D+N++G+EL V +DS + + A
Sbjct: 39 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDS-EAQNVKLLNIDA 97
Query: 178 TNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237
T F PG++ V + +P + + R+ ++ +++ G +
Sbjct: 98 DTLTDVFE------PGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHF 151
Query: 238 QSDIEEVMLRMKQQFLEYGKGKLVLVQDECD-TKTNQGGWLGENSFGVRSDWEQHVIDRG 296
++D + + F EYG L+L D +N G + +++E+ G
Sbjct: 152 KTDNRGLFEYSLKSFSEYG---LLLTYVSLDLHNSNLEG-------NIMTEYEEKFSALG 201
Query: 297 APMYR 301
P+YR
Sbjct: 202 QPIYR 206
>pdb|3DXX|A Chain A, Crystal Structure Of Ectrmb
pdb|3DXY|A Chain A, Crystal Structure Of Ectrmb In Complex With Sam
pdb|3DXZ|A Chain A, Crystal Structure Of Ectrmb In Complex With Sah
Length = 218
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 6/120 (5%)
Query: 127 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGITNGYFIATNATS 182
P+ ++IG G G L+ MA+ R + +FLG+E+ V C S G++N + +A
Sbjct: 36 PVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVE 95
Query: 183 TFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE 242
++ L +V + P+P ++ R+VQ E V L G + +D E
Sbjct: 96 VLHKMIPD--NSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWE 153
>pdb|1YZH|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein,
Methyltransferase From Streptococcus Pneumoniae Tigr4
pdb|1YZH|B Chain B, Crystal Structure Of The Conserved Hypothetical Protein,
Methyltransferase From Streptococcus Pneumoniae Tigr4
Length = 214
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/184 (19%), Positives = 85/184 (46%), Gaps = 22/184 (11%)
Query: 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGITNGYFI---AT 178
P+ V++GSG G F+ G A++ D+N++G+++ +++ D + G+ N + +
Sbjct: 42 NPIHVEVGSGKGAFVSGXAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGS 101
Query: 179 NATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238
+ T F G++ + + +P + + R+ ++ ++ +L +G++ +
Sbjct: 102 DLTDYFED------GEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK 155
Query: 239 SDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAP 298
+D + F +YG KL V + +G V +++EQ ++G
Sbjct: 156 TDNRGLFEYSLVSFSQYGX-KLNGVWLDLHASDFEG--------NVXTEYEQKFSNKGQV 206
Query: 299 MYRL 302
+YR+
Sbjct: 207 IYRV 210
>pdb|2P9Q|A Chain A, Crystal Structure Of Phosphoglycerate Kinase-2
pdb|2P9Q|B Chain B, Crystal Structure Of Phosphoglycerate Kinase-2
pdb|2P9T|A Chain A, Crystal Structure Of Phosphoglycerate Kinase-2 Bound To 3-
Phosphoglycerate
pdb|2PAA|A Chain A, Crystal Structure Of Phosphoglycerate Kinase-2 Bound To
Atp And 3pg
pdb|2PAA|B Chain B, Crystal Structure Of Phosphoglycerate Kinase-2 Bound To
Atp And 3pg
Length = 416
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%)
Query: 19 RLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSS 78
+++ Q + ++W GP+ ++ G L + K + C + G AK +
Sbjct: 325 QIVAQAKLIVWNGPIGVFEWDAFAKGTKALMDEVVKATSNGCVTIIGGGDTATCCAKWGT 384
Query: 79 SIFGLNMVESGSAVWEFLKGRMLPGVSAL 107
++ G A E L+G++LPGV AL
Sbjct: 385 EDKVSHVSTGGGASLELLEGKILPGVEAL 413
>pdb|1LTK|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From
Plasmodium Falciparum, In The Open Conformation
pdb|1LTK|B Chain B, Crystal Structure Of Phosphoglycerate Kinase From
Plasmodium Falciparum, In The Open Conformation
pdb|1LTK|C Chain C, Crystal Structure Of Phosphoglycerate Kinase From
Plasmodium Falciparum, In The Open Conformation
Length = 425
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 17 WKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKV 76
+K ++L + VIW GP ++ G+ + ++ +V++ +T++G ++ +
Sbjct: 332 YKDVILTSKTVIWNGPQGVFEXPNFAKGSIECLNLVVEVTKKGA-ITIVGGGDTASLVEQ 390
Query: 77 SSSIFGLNMVESGS-AVWEFLKGRMLPGVSAL 107
+ ++ V +G A E L+G+ LPGV AL
Sbjct: 391 QNKKNEISHVSTGGGASLELLEGKELPGVLAL 422
>pdb|3OZA|A Chain A, Crystal Structure Of Plasmodium Falciparum
3-Phosphoglycerate Kinase
pdb|3OZA|B Chain B, Crystal Structure Of Plasmodium Falciparum
3-Phosphoglycerate Kinase
pdb|3OZA|C Chain C, Crystal Structure Of Plasmodium Falciparum
3-Phosphoglycerate Kinase
Length = 424
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 17 WKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKV 76
+K ++L + VIW GP ++ G+ + ++ +V++ +T++G ++ +
Sbjct: 331 YKDVILTSKTVIWNGPQGVFEXPNFAKGSIECLNLVVEVTKKGA-ITIVGGGDTASLVEQ 389
Query: 77 SSSIFGLNMVESGS-AVWEFLKGRMLPGVSAL 107
+ ++ V +G A E L+G+ LPGV AL
Sbjct: 390 QNKKNEISHVSTGGGASLELLEGKELPGVLAL 421
>pdb|1VJC|A Chain A, Structure Of Pig Muscle Pgk Complexed With Mgatp
pdb|1VJD|A Chain A, Structure Of Pig Muscle Pgk Complexed With Atp
Length = 416
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 40/91 (43%)
Query: 17 WKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKV 76
+ + + + ++W GPV ++ G L + K + C + G AK
Sbjct: 323 YSEAVARAKQIVWNGPVGVFEWEAFAQGTKALMDEVVKATSRGCITIIGGGDTATCCAKW 382
Query: 77 SSSIFGLNMVESGSAVWEFLKGRMLPGVSAL 107
++ ++ G A E L+G++LPGV AL
Sbjct: 383 NTEDKVSHVSTGGGASLELLEGKVLPGVDAL 413
>pdb|1VPE|A Chain A, Crystallographic Analysis Of Phosphoglycerate Kinase From
The Hyperthermophilic Bacterium Thermotoga Maritima
Length = 398
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 10/96 (10%)
Query: 17 WKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKV 76
+K+ L + V+W GP+ ++ G ++ + +++ V G + A+ K
Sbjct: 303 FKQKLSDAKTVVWNGPMGVFEIDDFAEGTKQVALAIAALTEKGAITVVGGGDSAAAVNK- 361
Query: 77 SSSIFGL-----NMVESGSAVWEFLKGRMLPGVSAL 107
FGL ++ G A EFL+G+ LPG++++
Sbjct: 362 ----FGLEDKFSHVSTGGGASLEFLEGKELPGIASM 393
>pdb|1KF0|A Chain A, Crystal Structure Of Pig Muscle Phosphoglycerate Kinase
Ternary Complex With Amp-Pcp And 3pg
Length = 416
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 40/91 (43%)
Query: 17 WKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKV 76
+ + + + ++W GPV ++ G L + K + C + G AK
Sbjct: 323 YSEAVARAKQIVWNGPVGVFEWEAFAQGTKALMDEVVKATSRGCITIIGGGDTATCCAKW 382
Query: 77 SSSIFGLNMVESGSAVWEFLKGRMLPGVSAL 107
++ ++ G A E L+G++LPGV AL
Sbjct: 383 NTEDKVSHVSTGGGASLELLEGKVLPGVDAL 413
>pdb|2Y3I|A Chain A, The Structure Of The Fully Closed Conformation Of Human
Pgk In Complex With L-Adp, 3pg And The Tsa Aluminium
Tetrafluoride
pdb|2Y3I|D Chain D, The Structure Of The Fully Closed Conformation Of Human
Pgk In Complex With L-Adp, 3pg And The Tsa Aluminium
Tetrafluoride
Length = 416
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 40/91 (43%)
Query: 17 WKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKV 76
+ + + + ++W GPV ++ G L + K + C + G AK
Sbjct: 324 YAEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVVKATSRGCITIIGGGDTATCCAKW 383
Query: 77 SSSIFGLNMVESGSAVWEFLKGRMLPGVSAL 107
++ ++ G A E L+G++LPGV AL
Sbjct: 384 NTEDKVSHVSTGGGASLELLEGKVLPGVDAL 414
>pdb|3OZ7|A Chain A, Crystal Structure Of 3-Phosphopglycerate Kinase Of
Plasmodium Falciparum
pdb|3OZ7|B Chain B, Crystal Structure Of 3-Phosphopglycerate Kinase Of
Plasmodium Falciparum
Length = 417
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 17 WKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKV 76
+K ++L + VIW GP ++ G+ + ++ +V++ +T++G ++ +
Sbjct: 325 YKDVILTSKTVIWNGPQGVFEMPNFAKGSIECLNLVVEVTKKGA-ITIVGGGDTASLVEQ 383
Query: 77 SSSIFGLNMVESGS-AVWEFLKGRMLPGVSAL 107
+ ++ V +G A E L+G+ LPGV AL
Sbjct: 384 QNKKNEISHVSTGGGASLELLEGKELPGVLAL 415
>pdb|2ZGV|A Chain A, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To D-Adp
pdb|3C39|A Chain A, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To 3-Phosphoglycerate
pdb|3C39|B Chain B, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To 3-Phosphoglycerate
pdb|3C3A|A Chain A, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To 3-Phosphoglycerate And L-Adp
pdb|3C3A|B Chain B, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To 3-Phosphoglycerate And L-Adp
pdb|3C3B|A Chain A, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To D-Cdp
pdb|3C3B|B Chain B, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To D-Cdp
pdb|3C3C|A Chain A, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To 3-Phosphoglycerate And L-Cdp
pdb|3C3C|B Chain B, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To 3-Phosphoglycerate And L-Cdp
Length = 420
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 40/91 (43%)
Query: 17 WKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKV 76
+ + + + ++W GPV ++ G L + K + C + G AK
Sbjct: 327 YAEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVVKATSRGCITIIGGGDTATCCAKW 386
Query: 77 SSSIFGLNMVESGSAVWEFLKGRMLPGVSAL 107
++ ++ G A E L+G++LPGV AL
Sbjct: 387 NTEDKVSHVSTGGGASLELLEGKVLPGVDAL 417
>pdb|2WZB|A Chain A, The Catalytically Active Fully Closed Conformation Of
Human Phosphoglycerate Kinase In Complex With Adp, 3pg
And Magnesium Trifluoride
pdb|2WZC|A Chain A, The Catalytically Active Fully Closed Conformation Of
Human Phosphoglycerate Kinase In Complex With Adp, 3pg
And Aluminium Tetrafluoride
pdb|2X13|A Chain A, The Catalytically Active Fully Closed Conformation Of
Human Phosphoglycerate Kinase In Complex With Adp And
3phosphoglycerate
pdb|2X15|A Chain A, The Catalytically Active Fully Closed Conformation Of
Human Phosphoglycerate Kinase In Complex With Adp And
1,3- Bisphosphoglycerate
Length = 416
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 40/91 (43%)
Query: 17 WKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKV 76
+ + + + ++W GPV ++ G L + K + C + G AK
Sbjct: 323 YAEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVVKATSRGCITIIGGGDTATCCAKW 382
Query: 77 SSSIFGLNMVESGSAVWEFLKGRMLPGVSAL 107
++ ++ G A E L+G++LPGV AL
Sbjct: 383 NTEDKVSHVSTGGGASLELLEGKVLPGVDAL 413
>pdb|1FW8|A Chain A, Circularly Permuted Phosphoglycerate Kinase From Yeast:
Pgk P72
Length = 416
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 7/102 (6%)
Query: 12 LGQGPWKRLLL-----QLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG 66
L GP R L + + ++W GP +++ G L + K S N +IG
Sbjct: 241 LDNGPESRKLFAATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVK-SSAAGNTVIIG 299
Query: 67 SMACKAIAKVSSSIFGLNMVESGS-AVWEFLKGRMLPGVSAL 107
+AK ++ V +G A E L+G+ LPGV+ L
Sbjct: 300 GGDTATVAKKYGVTDKISHVSTGGGASLELLEGKELPGVAFL 341
>pdb|1QPG|A Chain A, 3-Phosphoglycerate Kinase, Mutation R65q
Length = 415
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 7/102 (6%)
Query: 12 LGQGPWKRLLL-----QLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG 66
L GP R L + + ++W GP +++ G L + K S N +IG
Sbjct: 311 LDNGPESRKLFAATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVK-SSAAGNTVIIG 369
Query: 67 SMACKAIAKVSSSIFGLNMVESGS-AVWEFLKGRMLPGVSAL 107
+AK ++ V +G A E L+G+ LPGV+ L
Sbjct: 370 GGDTATVAKKYGVTDKISHVSTGGGASLELLEGKELPGVAFL 411
>pdb|2X14|A Chain A, The Catalytically Active Fully Closed Conformation Of
Human Phosphoglycerate Kinase K219a Mutant In Complex
With Amp-Pcp And 3pg
Length = 416
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 40/91 (43%)
Query: 17 WKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKV 76
+ + + + ++W GPV ++ G L + K + C + G AK
Sbjct: 323 YAEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVVKATSRGCITIIGGGDTATCCAKW 382
Query: 77 SSSIFGLNMVESGSAVWEFLKGRMLPGVSAL 107
++ ++ G A E L+G++LPGV AL
Sbjct: 383 NTEDKVSHVSTGGGASLELLEGKVLPGVDAL 413
>pdb|2XE6|A Chain A, The Complete Reaction Cycle Of Human Phosphoglycerate
Kinase: The Open Binary Complex With 3pg
pdb|2XE7|A Chain A, The Complete Reaction Cycle Of Human Phosphoglycerate
Kinase: The Open Ternary Complex With 3pg And Adp
pdb|2XE8|A Chain A, The Complete Reaction Cycle Of Human Phosphoglycerate
Kinase: The Open Ternary Complex With 3pg And Amp-Pnp
pdb|2YBE|A Chain A, The Structure Of The Fully Closed Conformation Of Human
Pgk In Complex With L-Adp, 3pg And The Tsa Aluminium
Tetrafluoride At 2.0 A Resolution
Length = 417
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 40/91 (43%)
Query: 17 WKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKV 76
+ + + + ++W GPV ++ G L + K + C + G AK
Sbjct: 324 YAEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVVKATSRGCITIIGGGDTATCCAKW 383
Query: 77 SSSIFGLNMVESGSAVWEFLKGRMLPGVSAL 107
++ ++ G A E L+G++LPGV AL
Sbjct: 384 NTEDKVSHVSTGGGASLELLEGKVLPGVDAL 414
>pdb|2WZD|A Chain A, The Catalytically Active Fully Closed Conformation Of
Human Phosphoglycerate Kinase K219a Mutant In Complex
With Adp, 3pg And Aluminium Trifluoride
Length = 417
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 40/91 (43%)
Query: 17 WKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKV 76
+ + + + ++W GPV ++ G L + K + C + G AK
Sbjct: 324 YAEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVVKATSRGCITIIGGGDTATCCAKW 383
Query: 77 SSSIFGLNMVESGSAVWEFLKGRMLPGVSAL 107
++ ++ G A E L+G++LPGV AL
Sbjct: 384 NTEDKVSHVSTGGGASLELLEGKVLPGVDAL 414
>pdb|13PK|A Chain A, Ternary Complex Of Phosphoglycerate Kinase From
Trypanosoma Brucei
pdb|13PK|B Chain B, Ternary Complex Of Phosphoglycerate Kinase From
Trypanosoma Brucei
pdb|13PK|C Chain C, Ternary Complex Of Phosphoglycerate Kinase From
Trypanosoma Brucei
pdb|13PK|D Chain D, Ternary Complex Of Phosphoglycerate Kinase From
Trypanosoma Brucei
pdb|16PK|A Chain A, Phosphoglycerate Kinase From Trypanosoma Brucei
Bisubstrate Analog
Length = 415
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 23 QLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSSIFG 82
+ ++ IW GP+ YS G + + + + +++IG + A++S
Sbjct: 327 KCKSAIWNGPMGVFEMVPYSKGTFAIAKAMGRGTHEHGLMSIIGGGDSASAAELSGEAKR 386
Query: 83 LNMVESGS-AVWEFLKGRMLPGVSALD 108
++ V +G A E L+G+ LPGV+ LD
Sbjct: 387 MSHVSTGGGASLELLEGKTLPGVTVLD 413
>pdb|1HDI|A Chain A, Pig Muscle 3-Phosphoglycerate Kinase Complexed With 3-Pg
And Mgadp
Length = 413
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 40/91 (43%)
Query: 17 WKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKV 76
+ + + + ++W GPV ++ G L + K + C + G AK
Sbjct: 320 YSEAVARAKQIVWNGPVGVFEWEAFAQGTKALMDEVVKATSRGCITIIGGGDTATCCAKW 379
Query: 77 SSSIFGLNMVESGSAVWEFLKGRMLPGVSAL 107
++ ++ G A E L+G++LPGV AL
Sbjct: 380 NTEDNVSHVSTGGGASLELLEGKVLPGVDAL 410
>pdb|2VDV|E Chain E, Structure Of Trm8, M7g Methylation Enzyme
pdb|2VDV|F Chain F, Structure Of Trm8, M7g Methylation Enzyme
Length = 246
Score = 34.7 bits (78), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 34/165 (20%), Positives = 69/165 (41%), Gaps = 23/165 (13%)
Query: 112 PFDIDWSA--AYHDPAQP-------LVVDIGSGNG------------LFLLGMARKRKDL 150
P D+DWS Y+ A+ + DIG G G +LGM + +
Sbjct: 27 PQDMDWSKLYPYYKNAENGQMTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVT 86
Query: 151 NFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRP 210
N++ ++ ++ G N + NA + G+L + P+P F +
Sbjct: 87 NYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK--GQLSKMFFCFPDPHFKQR 144
Query: 211 EHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY 255
+H+ R++ +L+ + +L G V+ +D++++ M + E+
Sbjct: 145 KHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEEH 189
>pdb|2VDU|E Chain E, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
pdb|2VDU|F Chain F, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
Length = 254
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 34/165 (20%), Positives = 69/165 (41%), Gaps = 23/165 (13%)
Query: 112 PFDIDWSA--AYHDPAQP-------LVVDIGSGNG------------LFLLGMARKRKDL 150
P D+DWS Y+ A+ + DIG G G +LGM + +
Sbjct: 35 PQDMDWSKLYPYYKNAENGQMTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVT 94
Query: 151 NFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRP 210
N++ ++ ++ G N + NA + G+L + P+P F +
Sbjct: 95 NYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK--GQLSKMFFCFPDPHFKQR 152
Query: 211 EHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY 255
+H+ R++ +L+ + +L G V+ +D++++ M + E+
Sbjct: 153 KHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEEH 197
>pdb|3PGK|A Chain A, The Structure Of Yeast Phosphoglycerate Kinase At 0.25 Nm
Resolution
Length = 416
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 7/102 (6%)
Query: 12 LGQGPWKRLLL-----QLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG 66
L GP R L + ++W GP +++ G L + K S N +IG
Sbjct: 312 LDNGPESRKLFAATVAKATVILWNGPPGVFEFEKFAAGTKALLDEVVK-SSAAGNTVIIG 370
Query: 67 SMACKAIAKVSSSIFGLNMVESGS-AVWEFLKGRMLPGVSAL 107
+AK ++ V +G A E L+G+ LPGV+ L
Sbjct: 371 GGDTATVAKKYGVTDKISHVSTGGGASLELLEGKELPGVAFL 412
>pdb|4DG5|A Chain A, Crystal Structure Of Staphylococcal Phosphoglycerate
Kinase
Length = 403
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 25 QNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG--SMACKAIAKVSSSIFG 82
V+W GP+ ++SN A G+ ++ +T+IG A AI+ + F
Sbjct: 320 HTVVWNGPMGVF---EFSNFAQGTIGVCKAIANLKDAITIIGGGDSAAAAISLGFENDF- 375
Query: 83 LNMVESGSAVWEFLKGRMLPGVSALDR 109
++ G A E+L+G+ LPG+ A++
Sbjct: 376 THISTGGGASLEYLEGKELPGIKAINN 402
>pdb|4EHJ|A Chain A, An X-Ray Structure Of A Putative Phosphogylcerate Kinase
From Francisella Tularensis Subsp. Tularensis Schu S4
pdb|4EHJ|B Chain B, An X-Ray Structure Of A Putative Phosphogylcerate Kinase
From Francisella Tularensis Subsp. Tularensis Schu S4
Length = 392
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 20/117 (17%)
Query: 2 VFQMVGNLSILGQGPWKR-----LLLQLQNVIWVGPVK-FRFSSQYSNGASKLTGMLCKV 55
V +V + IL GP + LL ++W GPV F F + ++ G L+ +
Sbjct: 279 VSDVVADEXILDIGPESQKIIAELLKSANTILWNGPVGVFEFDN-FAEGTKALS---LAI 334
Query: 56 SQGTCNVTVIGSMACKAIAKVSSSIFGLN-----MVESGSAVWEFLKGRMLPGVSAL 107
+Q G AI K FG+ + +G A EFL+G+ LP + L
Sbjct: 335 AQSHAFSVAGGGDTIAAIEK-----FGIKDQVSYISTAGGAFLEFLEGKKLPAIEIL 386
>pdb|1PHP|A Chain A, Structure Of The Adp Complex Of The 3-Phosphoglycerate
Kinase From Bacillus Stearothermophilus At 1.65
Angstroms
Length = 394
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 17/109 (15%)
Query: 10 SILGQGP-----WKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTV 64
S L GP ++ ++ + + V+W GP+ +++G +K + T +V +
Sbjct: 291 SALDIGPKTRELYRDVIRESKLVVWNGPMGVFEMDAFAHG-TKAIAEALAEALDTYSV-I 348
Query: 65 IGSMACKAIAKVSSSIFGL-----NMVESGSAVWEFLKGRMLPGVSALD 108
G + A+ K FGL ++ G A EF++G+ LPGV AL+
Sbjct: 349 GGGDSAAAVEK-----FGLADKMDHISTGGGASLEFMEGKQLPGVVALE 392
>pdb|3EJG|A Chain A, Crystal Structure Of Hcov-229e X-Domain
Length = 193
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVM 245
P D++ P Q ++ E ++ LVHD F Q D++ V+
Sbjct: 9 PMSDYDIPTTENLYFQGAMAEKLNAFLVHDNVAFYQGDVDTVV 51
>pdb|4FEY|A Chain A, An X-Ray Structure Of A Putative Phosphogylcerate Kinase
With Bound Adp From Francisella Tularensis Subsp.
Tularensis Schu S4
Length = 395
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 20/117 (17%)
Query: 2 VFQMVGNLSILGQGPWKR-----LLLQLQNVIWVGPVK-FRFSSQYSNGASKLTGMLCKV 55
V +V + IL GP + LL ++W GPV F F + ++ G L+ +
Sbjct: 282 VSDVVADEMILDIGPESQKIIAELLKSANTILWNGPVGVFEFDN-FAEGTKALS---LAI 337
Query: 56 SQGTCNVTVIGSMACKAIAKVSSSIFGLN-----MVESGSAVWEFLKGRMLPGVSAL 107
+Q G AI K FG+ + +G A EFL+G+ LP + L
Sbjct: 338 AQSHAFSVAGGGDTIAAIEK-----FGIKDQVSYISTAGGAFLEFLEGKKLPAIEIL 389
>pdb|3SP1|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase (Cyss) From
Borrelia Burgdorferi
pdb|3SP1|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase (Cyss) From
Borrelia Burgdorferi
Length = 501
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 73 IAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFD 114
+ K+S F LN+ + + +WE +K L VS L AF FD
Sbjct: 392 VEKIS---FDLNVAQGLALLWEIIKSDNLSFVSKLRLAFIFD 430
>pdb|1OOC|A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A
pdb|1OOC|B Chain B, Mutations In The T1.5 Loop Of Pectate Lyase A
pdb|1PE9|A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A
pdb|1PE9|B Chain B, Mutations In The T1.5 Loop Of Pectate Lyase A
Length = 361
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
Query: 26 NVIWVGPVK---FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSSIFG 82
N ++ G K +R+ QYS G +L + + T + S ACK + K + SIF
Sbjct: 254 NNVFKGDAKDPVYRY--QYSFGIGTSGSVLSEGNSFTI-ANLSASKACKVVKKFNGSIFS 310
Query: 83 LN-MVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSG 135
N V +GSAV L G G SA P+ D + AQ + + GSG
Sbjct: 311 DNGSVLNGSAV--DLSG---CGFSAYTSKIPYIYDVQPMTTELAQSITDNAGSG 359
>pdb|1JRG|A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A,
Erwinia Chrysanthemi
pdb|1JRG|B Chain B, Crystal Structure Of The R3 Form Of Pectate Lyase A,
Erwinia Chrysanthemi
pdb|1JTA|A Chain A, Crystal Structure Of Pectate Lyase A (C2 Form)
Length = 361
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
Query: 26 NVIWVGPVK---FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSSIFG 82
N ++ G K +R+ QYS G +L + + T + S ACK + K + SIF
Sbjct: 254 NNVFKGDAKDPVYRY--QYSFGIGTSGSVLSEGNSFTI-ANLSASKACKVVKKFNGSIFS 310
Query: 83 LN-MVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSG 135
N V +GSAV L G G SA P+ D + AQ + + GSG
Sbjct: 311 DNGSVLNGSAV--DLSG---CGFSAYTSKIPYIYDVQPMTTELAQSITDNAGSG 359
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,105,608
Number of Sequences: 62578
Number of extensions: 360457
Number of successful extensions: 822
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 797
Number of HSP's gapped (non-prelim): 34
length of query: 311
length of database: 14,973,337
effective HSP length: 99
effective length of query: 212
effective length of database: 8,778,115
effective search space: 1860960380
effective search space used: 1860960380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)