BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021567
(311 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8YVX4|TRMB_NOSS1 tRNA (guanine-N(7)-)-methyltransferase OS=Nostoc sp. (strain PCC
7120 / UTEX 2576) GN=trmB PE=3 SV=1
Length = 219
Score = 112 bits (280), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 107/203 (52%), Gaps = 23/203 (11%)
Query: 115 IDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS------ 168
++W AY P QPL +DIG G F+L MA+ + NFLGLE+ R+SL +
Sbjct: 31 LEWEKAYSTPHQPLHLDIGCARGRFVLQMAQVEPNWNFLGLEI----RESLVIEANQFRS 86
Query: 169 --GITNGYFIATNATSTFRSIVASYP-GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAV 225
G+TN +++ NA ++ + +++S P G L V+IQ P+P F + R+VQ LV+ +
Sbjct: 87 QLGLTNLHYLYCNANNSLQPLLSSLPTGILQRVTIQFPDPWFKTRHAKRRVVQPELVQDI 146
Query: 226 SDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVR 285
++ L G VFLQSD+E V + M +F + K G WL EN V
Sbjct: 147 ANYLAVGGVVFLQSDMEFVAVEMCDRF----------AANPAFKKVGTGEWLTENPLPVA 196
Query: 286 SDWEQHVIDRGAPMYRLMLSKPS 308
++ E +RG P+YR + + S
Sbjct: 197 TERETTTQNRGEPVYRALFERSS 219
>sp|B0JUK5|TRMB_MICAN tRNA (guanine-N(7)-)-methyltransferase OS=Microcystis aeruginosa
(strain NIES-843) GN=trmB PE=3 SV=1
Length = 211
Score = 112 bits (279), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 100/191 (52%), Gaps = 15/191 (7%)
Query: 116 DWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLE----LVTHCRDSLQLSGIT 171
DW+ Y D QPL +DIG G FLL MA+ ++NFLG+E LV + G++
Sbjct: 25 DWNQVYQDMTQPLHLDIGCARGKFLLQMAQVEPEINFLGIEIRQPLVIEANQERERLGLS 84
Query: 172 NGYFIATNATSTFRSIVASYPG-KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLV 230
N F+ N ++ S P KL VSIQ P+P F + + R+VQ LV A++ +V
Sbjct: 85 NLAFVFGNMNVAPEILLQSLPADKLFWVSIQFPDPWFKQRHSKRRVVQPELVIALAKYMV 144
Query: 231 HDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQ 290
G VFLQSD+E + L M ++F + + +Q WL EN F V ++ E+
Sbjct: 145 AGGWVFLQSDVESIALEMTERFQAHPHF----------VRQHQTPWLEENIFPVPTEREK 194
Query: 291 HVIDRGAPMYR 301
++G P+YR
Sbjct: 195 STYNKGQPVYR 205
>sp|Q3M3Q5|TRMB_ANAVT tRNA (guanine-N(7)-)-methyltransferase OS=Anabaena variabilis
(strain ATCC 29413 / PCC 7937) GN=trmB PE=3 SV=1
Length = 215
Score = 107 bits (268), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 100/197 (50%), Gaps = 15/197 (7%)
Query: 115 IDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLE----LVTHCRDSLQLSGI 170
++W Y P QPL +DIG G F+L MA+ NFLGLE LV G+
Sbjct: 27 LEWEKVYSSPHQPLHLDIGCARGRFVLQMAQVEPRWNFLGLEIREPLVIEANQFRSQLGL 86
Query: 171 TNGYFIATNATSTFRSIVASYP-GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLL 229
+N +++ NA ++ + +++S P G L V+IQ P+P F + R+VQ LV+ +++ L
Sbjct: 87 SNLHYLYCNANNSLQPLLSSLPTGILQRVTIQFPDPWFKTRHAKRRVVQPELVQDIANYL 146
Query: 230 VHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWE 289
G VFLQSD+E V + M +F + K G WL EN V ++ E
Sbjct: 147 AVGGVVFLQSDMEFVAVEMCDRF----------AANPAFKKVGSGEWLSENPLPVATERE 196
Query: 290 QHVIDRGAPMYRLMLSK 306
+RG P+YR + +
Sbjct: 197 TTTQNRGEPVYRALFER 213
>sp|Q2JRH1|TRMB_SYNJA tRNA (guanine-N(7)-)-methyltransferase OS=Synechococcus sp. (strain
JA-3-3Ab) GN=trmB PE=3 SV=1
Length = 236
Score = 105 bits (263), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 101/197 (51%), Gaps = 23/197 (11%)
Query: 117 WSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL-------VTHCRDSLQLSG 169
W Y QPL +DIGSG+G FLL MA+++ D NFLG+E+ RD L G
Sbjct: 55 WERVYRRLGQPLHLDIGSGSGRFLLRMAQEQPDWNFLGVEIRQPLVERANAWRDEL---G 111
Query: 170 ITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLL 229
+ N +F+ N + R + A PG L V+IQ P+P F + H+ R+VQ LV ++ LL
Sbjct: 112 LDNVHFLFANINVSLRHLFA--PGDLSRVTIQFPDPWFKKRHHKRRIVQPRLVADLALLL 169
Query: 230 VHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWE 289
VFLQSD+ EV M +FLE+ + G + +N FG+ ++ E
Sbjct: 170 QPGSPVFLQSDVREVAEEMVDRFLEHPQ-----------FWNPYQGPIDDNPFGIPTERE 218
Query: 290 QHVIDRGAPMYRLMLSK 306
+ G P+YR L +
Sbjct: 219 WQCLQLGLPIYRYWLER 235
>sp|Q8DHH6|TRMB_THEEB tRNA (guanine-N(7)-)-methyltransferase OS=Thermosynechococcus
elongatus (strain BP-1) GN=trmB PE=3 SV=1
Length = 213
Score = 105 bits (261), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 109/215 (50%), Gaps = 20/215 (9%)
Query: 99 RMLPGVSALDRAFPFDI---DWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGL 155
R+ V+ L + F DI DWS Y P+QPL +DIG G FLL MA + NFLGL
Sbjct: 9 RVRQHVNPLSQKFQQDIPVPDWSRIYEQPSQPLHLDIGCARGTFLLEMAALYPEQNFLGL 68
Query: 156 E----LVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPE 211
E LV + + N +++ NA I+ P L V+IQ P+P F R
Sbjct: 69 EIRYPLVVAANERRDRQQLRNLHYLWGNANVHLSKILGGLP--LHTVTIQFPDPWFKRRH 126
Query: 212 HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKT 271
H+ R+V LV +++LL G+V LQSD+ EV M QQF +G + T T
Sbjct: 127 HKRRVVTPELVATLAELLPAGGRVVLQSDVFEVAESMVQQFRAHGAFR--------STCT 178
Query: 272 NQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSK 306
+ WL ++ + V ++ E+ V+++G +YR +
Sbjct: 179 D---WLPQSPWPVATEREKCVLNKGLAVYRWQFER 210
>sp|P73161|TRMB_SYNY3 tRNA (guanine-N(7)-)-methyltransferase OS=Synechocystis sp. (strain
PCC 6803 / Kazusa) GN=trmB PE=3 SV=2
Length = 211
Score = 104 bits (259), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 97/195 (49%), Gaps = 14/195 (7%)
Query: 116 DWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLE----LVTHCRDSLQLSGIT 171
DW+ Y D +PL +DIG G F L MA++ D NFLG+E LV ++ G+
Sbjct: 25 DWATVYDDVQRPLHLDIGCARGRFPLKMAQQHPDWNFLGVEIRQPLVLEANETGDRLGLK 84
Query: 172 NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVH 231
N +++ N +++P L VSIQ P+P F + ++ R+ Q LV A+++ L
Sbjct: 85 NLHYLFGNINVEPEKFFSAFPPTLQRVSIQFPDPWFKQRHNKRRVAQPELVTAIANALPP 144
Query: 232 DGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQH 291
G+V LQSD+E V M+ +F E V D WL EN GV ++ E
Sbjct: 145 GGEVLLQSDVEPVAQDMRDRFAE--NDNFVFTHD--------TPWLAENPLGVPTEREIA 194
Query: 292 VIDRGAPMYRLMLSK 306
+ P+YR +L +
Sbjct: 195 CFNLQRPVYRCLLQR 209
>sp|Q5N2X5|TRMB_SYNP6 tRNA (guanine-N(7)-)-methyltransferase OS=Synechococcus sp. (strain
ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=trmB PE=3 SV=1
Length = 213
Score = 98.2 bits (243), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 99/199 (49%), Gaps = 17/199 (8%)
Query: 116 DWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLE----LVTHCRDSLQLSGIT 171
DW Y D +PL +DIG G FLL MA + + N+LGLE LV + +T
Sbjct: 25 DWQQVYADCDRPLHLDIGCARGRFLLAMATAQPEWNYLGLEIREPLVDEANAIARERELT 84
Query: 172 NGYFIATNATSTFRSIVASYP-GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLV 230
N Y+ +NA ++ S P G L VSIQ P+P F + + R+VQ LV+A++ L
Sbjct: 85 NLYYHFSNANLDLEPLLRSLPTGILQRVSIQFPDPWFKKRHQKRRVVQPELVQALATALP 144
Query: 231 HDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQ 290
+VFLQSD+ EV M + F + Q C WL EN V ++ E
Sbjct: 145 AGAEVFLQSDVLEVQAEMCEHFAAEPR-----FQRTC------LDWLPENPLPVPTEREI 193
Query: 291 HVIDRGAPMYR-LMLSKPS 308
V ++ P+YR L + +P+
Sbjct: 194 AVQNKQLPVYRALFIRQPA 212
>sp|P72546|TRMB_SYNE7 tRNA (guanine-N(7)-)-methyltransferase OS=Synechococcus elongatus
(strain PCC 7942) GN=trmB PE=3 SV=2
Length = 213
Score = 98.2 bits (243), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 99/199 (49%), Gaps = 17/199 (8%)
Query: 116 DWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLE----LVTHCRDSLQLSGIT 171
DW Y D +PL +DIG G FLL MA + + N+LGLE LV + +T
Sbjct: 25 DWQQVYADCDRPLHLDIGCARGRFLLAMATAQPEWNYLGLEIREPLVDEANAIARERELT 84
Query: 172 NGYFIATNATSTFRSIVASYP-GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLV 230
N Y+ +NA ++ S P G L VSIQ P+P F + + R+VQ LV+A++ L
Sbjct: 85 NLYYHFSNANLDLEPLLRSLPTGILQRVSIQFPDPWFKKRHQKRRVVQPELVQALATALP 144
Query: 231 HDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQ 290
+VFLQSD+ EV M + F + Q C WL EN V ++ E
Sbjct: 145 AGAEVFLQSDVLEVQAEMCEHFAAEPR-----FQRTC------LDWLPENPLPVPTEREI 193
Query: 291 HVIDRGAPMYR-LMLSKPS 308
V ++ P+YR L + +P+
Sbjct: 194 AVQNKQLPVYRALFIRQPA 212
>sp|Q2JJQ0|TRMB_SYNJB tRNA (guanine-N(7)-)-methyltransferase OS=Synechococcus sp. (strain
JA-2-3B'a(2-13)) GN=trmB PE=3 SV=1
Length = 239
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 99/197 (50%), Gaps = 23/197 (11%)
Query: 117 WSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL-------VTHCRDSLQLSG 169
W Y QP +DIG+G+G FLL +A+++ D NFLG+E+ RD L G
Sbjct: 58 WERVYRRLGQPFHLDIGTGSGRFLLRIAQEQPDWNFLGVEIRQALVERANAWRDEL---G 114
Query: 170 ITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLL 229
+ N +F+ N + R + A PG L V+I P+P F + H+ R+VQ LV ++ LL
Sbjct: 115 LDNVHFLFANINVSLRHLFA--PGDLSRVTILFPDPWFKKRHHKRRIVQPQLVADLALLL 172
Query: 230 VHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWE 289
VFLQSDI+EV M +FLE+ + +QG L N G+ ++ E
Sbjct: 173 RPGSPVFLQSDIQEVAEEMAARFLEHPQF----------WDPHQGP-LDSNPLGIPTERE 221
Query: 290 QHVIDRGAPMYRLMLSK 306
+ P+YR L +
Sbjct: 222 WQCLQLDLPIYRYWLER 238
>sp|Q117P8|TRMB_TRIEI tRNA (guanine-N(7)-)-methyltransferase OS=Trichodesmium erythraeum
(strain IMS101) GN=trmB PE=3 SV=1
Length = 220
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 96/196 (48%), Gaps = 16/196 (8%)
Query: 116 DWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLE----LVTHCRDSLQLSGIT 171
++S Y D +PL +DIG G FL MA+ + NFLGLE LV + G+
Sbjct: 25 NFSDIYADIKKPLYLDIGCARGRFLWQMAQVEPEWNFLGLEIREPLVIEANNWRDEKGLN 84
Query: 172 NGYFIATNATSTFRSIVASYP-GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLV 230
N +++ NA + I S+P G L VSI P+P F R R+VQ LVE +++ L
Sbjct: 85 NLHYLFCNANISLGKIFESFPKGILKKVSILFPDPWFKRRHQTRRVVQPKLVEDLANYLT 144
Query: 231 HDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQ 290
G+VFL SDIE+V M +F +G + WL EN V S+ E+
Sbjct: 145 VGGEVFLHSDIEKVAKEMCNRFSAHG-----------SFYRSYNDWLKENILPVLSEREK 193
Query: 291 HVIDRGAPMYRLMLSK 306
+ + P+YR + K
Sbjct: 194 VTLGKNQPVYRALFIK 209
>sp|A5GIJ2|TRMB_SYNPW tRNA (guanine-N(7)-)-methyltransferase OS=Synechococcus sp. (strain
WH7803) GN=trmB PE=3 SV=1
Length = 237
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 108/215 (50%), Gaps = 24/215 (11%)
Query: 104 VSALDRAFPFDIDWSAA---YHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV-- 158
V+ L R F ++ A + DP +P+ +DIG G+ L +A R D N LG+E+
Sbjct: 5 VNPLSRFFQLPLELPAPEQLFDDPGRPIHLDIGCARGICLQELAALRPDRNHLGVEIRRP 64
Query: 159 ---THCRDSLQLSGITNGYFIATNATSTFRSIVASYP-GKLILVSIQCPNPDFNRPEHRW 214
+ RD QL + N +++ NA + +A+ P +L LVSIQ P+P F R +
Sbjct: 65 LVRSAQRDRDQLERL-NLHYLFCNANVSLEGWMAALPQDRLQLVSIQFPDPWFKRRHRKR 123
Query: 215 RMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQ-DECDTKTNQ 273
R++Q SL+ A++ L ++F+QSD+ V+ M + LV+ C + +
Sbjct: 124 RVLQPSLLLAIAATLQPGRELFVQSDVLAVIDPM-----------VALVELSGCFDRPAE 172
Query: 274 GG--WLGENSFGVRSDWEQHVIDRGAPMYRLMLSK 306
W +N V ++ E++V + G P YR++ +
Sbjct: 173 DARPWRADNPLPVPTERERYVQELGLPAYRVLYRR 207
>sp|A2C073|TRMB_PROM1 tRNA (guanine-N(7)-)-methyltransferase OS=Prochlorococcus marinus
(strain NATL1A) GN=trmB PE=3 SV=1
Length = 214
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 97/191 (50%), Gaps = 17/191 (8%)
Query: 127 PLVVDIGSGNGLFLLGMARKRKDLNFLGLE----LVTHCRDSLQLSGITNGYFIATNATS 182
P+ +DIGS G FL+ +A K D NF+GLE LV+ C + +TN F+ N
Sbjct: 31 PIHLDIGSAKGEFLIELATKYPDWNFVGLEIREPLVSLCEKKRRKLELTNLKFLFCNVNV 90
Query: 183 TFRSIVASYP-GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 241
+ ++ G+L VSIQ P+P F R + R++ +++ +++ + DG++F+QSDI
Sbjct: 91 SLDEWLSDLDFGQLKRVSIQFPDPWFKRKHFKRRVLNTNILNSIAKSMSKDGEIFIQSDI 150
Query: 242 EEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGW--LGENSFGVRSDWEQHVIDRGAPM 299
+ +EY + ++ T+ N G + +N + V +D E + + +
Sbjct: 151 --------LKLIEYMTN--TIDENRYFTRKNVGDLRSIDKNPYDVMTDREIFSLKKNLLI 200
Query: 300 YRLMLSKPSCV 310
YR+M + S +
Sbjct: 201 YRVMYIRNSLL 211
>sp|Q46HD3|TRMB_PROMT tRNA (guanine-N(7)-)-methyltransferase OS=Prochlorococcus marinus
(strain NATL2A) GN=trmB PE=3 SV=1
Length = 214
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 99/191 (51%), Gaps = 17/191 (8%)
Query: 127 PLVVDIGSGNGLFLLGMARKRKDLNFLGLE----LVTHCRDSLQLSGITNGYFIATNATS 182
P+ +DIGS G FL+ +A K D NF+GLE LV+ C + +TN F+ N
Sbjct: 31 PIHLDIGSAKGEFLIELATKCPDWNFVGLEIREPLVSLCEKKRRKLELTNLKFLFCNVNV 90
Query: 183 TFRSIVASYP-GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 241
+ ++ G+L VSIQ P+P F R + R+++ +++ +++ + +G++F+QSDI
Sbjct: 91 SLDEWLSDLDFGQLKRVSIQFPDPWFKRKHFKRRVLKTNILNSIAKAMSKNGEIFIQSDI 150
Query: 242 EEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGW--LGENSFGVRSDWEQHVIDRGAPM 299
E+ +EY + ++ T+ N G + +N + V +D E + + +
Sbjct: 151 FEL--------IEYMTN--TIDENRYFTRKNVGDLRSINKNPYNVMTDREILSLKKNLLI 200
Query: 300 YRLMLSKPSCV 310
YR+M + S +
Sbjct: 201 YRVMYIRNSLL 211
>sp|Q0IDB0|TRMB_SYNS3 tRNA (guanine-N(7)-)-methyltransferase OS=Synechococcus sp. (strain
CC9311) GN=trmB PE=3 SV=1
Length = 237
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 103/218 (47%), Gaps = 30/218 (13%)
Query: 104 VSALDRAFPFDIDWSAA---YHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL--- 157
V+ L R F ++ A + P P+ +DIG G FLL +A + + N LG+E+
Sbjct: 5 VNPLSRFFQLPLELPAPHELFEHPNLPIHLDIGCARGFFLLELAAMQPERNHLGVEIRRP 64
Query: 158 ----VTHCRDSLQLSGITNGYFIATNATSTFRSIVASYP-GKLILVSIQCPNPDFNRPEH 212
H RD + N +F+ NA + + +A+ P +L LVSIQ P+P F + H
Sbjct: 65 LVQAAQHDRDRQEQH---NLHFLFCNANISLEAWMAALPPDQLQLVSIQFPDPWFKQ-RH 120
Query: 213 RWRMVQRSLVEAVSDLLVHDGK-VFLQSDIEEVMLRMKQQFLEYGKGKLVLVQ-DEC--D 268
R R V + + +H G+ +FLQSD+ V+ M + LV+ C
Sbjct: 121 RKRRVLQPALLLAIAAALHPGRHLFLQSDVLAVIEPM-----------VALVELSNCFAR 169
Query: 269 TKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSK 306
K + W N V ++ E++V ++G P YR++ +
Sbjct: 170 PKDDPQPWRSSNPLPVATERERYVQEQGQPTYRVLFER 207
>sp|Q7U9H3|TRMB_SYNPX tRNA (guanine-N(7)-)-methyltransferase OS=Synechococcus sp. (strain
WH8102) GN=trmB PE=3 SV=1
Length = 236
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 102/213 (47%), Gaps = 20/213 (9%)
Query: 104 VSALDRAFPFDIDWSAA---YHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLE---- 156
V+ L R F + + + P QP+ +DIG G +LG+A N LG+E
Sbjct: 5 VNPLSRFFQLPLQLPSPGELFDHPEQPIHLDIGCARGRCILGLAELNPGWNHLGVEIRRP 64
Query: 157 LVTHC-RDSLQLSGITNGYFIATNATSTFRSIVASYPG-KLILVSIQCPNPDFNRPEHRW 214
LVT RD+L SG N + NA + S +A+ P +L VS+Q P+P F R HR
Sbjct: 65 LVTAADRDALN-SGSGNVRVLFCNANISLESWLAALPNDRLQRVSVQFPDPWFKR-RHRK 122
Query: 215 RMVQRSLVEAVSDLLVHDGK-VFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQ 273
R V + + + G+ +FLQSD+ V+ + + + + E D +
Sbjct: 123 RRVLQPALLLAIAAALQPGRELFLQSDVLAVI----EPMVALTELSGCFTRPESDARP-- 176
Query: 274 GGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSK 306
W +N V ++ EQ+V+++ P+YR++ +
Sbjct: 177 --WRADNPLPVPTEREQYVLEKNLPVYRVLYRR 207
>sp|Q7V4W7|TRMB_PROMM tRNA (guanine-N(7)-)-methyltransferase OS=Prochlorococcus marinus
(strain MIT 9313) GN=trmB PE=3 SV=1
Length = 236
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 96/190 (50%), Gaps = 19/190 (10%)
Query: 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL-----VTHCRDSLQLSGITNGYFIATN 179
++PL +DIG G FLL +A + + N +G+E+ ++ RD +L + N F+ N
Sbjct: 29 SRPLHLDIGCARGGFLLSLAPLQPEWNHVGVEIRHPLVLSAERDRQELE-LDNLRFLFCN 87
Query: 180 ATSTFRSIVASYP-GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238
+ + + P +L VSIQ P+P F R + R++Q SL+ A++ L ++F+Q
Sbjct: 88 VNVSLEEWLDALPRDQLQWVSIQFPDPWFKRRHQKRRVLQPSLLIALATALQPGRELFIQ 147
Query: 239 SDIEEVMLRMKQQFLEYGKGKLVLVQDEC--DTKTNQGGWLGENSFGVRSDWEQHVIDRG 296
SD+ V+ M +++ Q C K + W N V ++ E++V+D+G
Sbjct: 148 SDVLSVIEPM----------VMLIEQSNCFERPKNDSHAWQKANPLPVPTERERYVLDQG 197
Query: 297 APMYRLMLSK 306
+YR + +
Sbjct: 198 LQVYRRLYQR 207
>sp|A2CCG0|TRMB_PROM3 tRNA (guanine-N(7)-)-methyltransferase OS=Prochlorococcus marinus
(strain MIT 9303) GN=trmB PE=3 SV=1
Length = 236
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 92/189 (48%), Gaps = 17/189 (8%)
Query: 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLE----LVTHCRDSLQLSGITNGYFIATNA 180
++PL +DIG G FLLG+A + + N +G+E LV Q + N F+ N
Sbjct: 29 SRPLHLDIGCARGGFLLGLAPLQPEWNHVGVEIRHPLVLSAERDRQELKLDNLRFLFCNV 88
Query: 181 TSTFRSIVASYP-GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239
+ + + P +L VSIQ P+P F R + R++Q SL+ A++ L ++F+QS
Sbjct: 89 NVSLEEWLDALPRDQLQWVSIQFPDPWFKRRHQKRRVLQPSLLIALATALQPGRELFIQS 148
Query: 240 DIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQG--GWLGENSFGVRSDWEQHVIDRGA 297
D+ V+ M +++ Q C + W N V ++ E++V+D+G
Sbjct: 149 DVLSVIEPM----------VMLIEQSNCFKRPGDDFHPWQRTNPMPVPTERERYVLDQGL 198
Query: 298 PMYRLMLSK 306
+YR + +
Sbjct: 199 QVYRRLYQR 207
>sp|Q7V350|TRMB_PROMP tRNA (guanine-N(7)-)-methyltransferase OS=Prochlorococcus marinus
subsp. pastoris (strain CCMP1986 / MED4) GN=trmB PE=3
SV=1
Length = 209
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 85/175 (48%), Gaps = 10/175 (5%)
Query: 100 MLPGVSALDRAFPFDID----WSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGL 155
M V+ L + F F+ID + + +P PL +DIG +G FL ++ K K+ N++G+
Sbjct: 1 MRQHVNPLSKNF-FEIDPIPPLNQVFENPKLPLHLDIGCASGEFLFELSLKNKNWNYIGI 59
Query: 156 E----LVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLIL-VSIQCPNPDFNRP 210
E LV + ++ N YF NA + F LI +S P+P F +
Sbjct: 60 EIREKLVLNANLKMKSRENKNLYFSFGNANNIFNQTNNKSIINLITSISFNFPDPWFKKK 119
Query: 211 EHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQD 265
H+ R++Q L+ +S+ + +F+++D+ ++ M+ E K K + QD
Sbjct: 120 HHKRRVIQPKLLNLLSNSMKKGSLIFIKTDVRDLFDHMELTISESIKFKKIPYQD 174
>sp|Q8EP25|TRMB_OCEIH tRNA (guanine-N(7)-)-methyltransferase OS=Oceanobacillus iheyensis
(strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831)
GN=trmB PE=3 SV=1
Length = 213
Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 94/196 (47%), Gaps = 29/196 (14%)
Query: 116 DWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGIT 171
+WS +++ P+ V+IGSG G F+LGMA++ ++NF+G+EL + ++ +
Sbjct: 30 NWSQLFNN-NNPIHVEIGSGKGQFILGMAKQYPEINFIGIELAKSIIVSAVQKIEEENLA 88
Query: 172 NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVH 231
N + + NA R + A +I ++ P P NR E R R+ +E D+L
Sbjct: 89 NVFMLNENAIDV-REMFADDEISMIYLNFSDPWPK-NRHEKR-RLTYGRFLEQYQDILGA 145
Query: 232 DGKVFLQSD----IEEVMLRMKQQFLEYGKGKLVL--VQDECDTKTNQGGWLGENSFGVR 285
+G+V L++D E ++ Q + + + L +QDE + V
Sbjct: 146 NGEVILKTDNRGLFEYSVVSFSQNGMNINEINVDLHAIQDETN---------------VM 190
Query: 286 SDWEQHVIDRGAPMYR 301
+++E+ +G P+YR
Sbjct: 191 TEYEEKFSTKGQPIYR 206
>sp|Q3AW35|TRMB_SYNS9 tRNA (guanine-N(7)-)-methyltransferase OS=Synechococcus sp. (strain
CC9902) GN=trmB PE=3 SV=1
Length = 236
Score = 65.1 bits (157), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 99/213 (46%), Gaps = 20/213 (9%)
Query: 104 VSALDRAFPFDIDW---SAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL--- 157
V+ L R+F + S + P P+ +DIG G +L +A + + N +G+E+
Sbjct: 5 VNPLSRSFQLPLRLPPPSELFTHPEHPIHLDIGCARGRCILDLADRHPNWNHIGVEIRRP 64
Query: 158 --VTHCRDSLQLSGITNGYFIATNATSTFRSIVASYP-GKLILVSIQCPNPDFNRPEHRW 214
+ R++L+ S N + NA + + + P +L VSIQ P+P F R +
Sbjct: 65 LVIPADREALE-SPHGNVRVLFCNANISLEGWMETLPKDRLQRVSIQFPDPWFKRRHRKR 123
Query: 215 RMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQG 274
R++Q L+ A++ L F+QSD+ EV+ M L + D N
Sbjct: 124 RVLQPRLLMAIASALQPGKDFFIQSDVREVIDPM---------VALTELSGCFDRPENDA 174
Query: 275 -GWLGENSFGVRSDWEQHVIDRGAPMYRLMLSK 306
W N V ++ E++V+D+ P+YR++ +
Sbjct: 175 HPWRRTNPLTVPTERERYVMDQQLPVYRVLFRR 207
>sp|A2BUM1|TRMB_PROM5 tRNA (guanine-N(7)-)-methyltransferase OS=Prochlorococcus marinus
(strain MIT 9515) GN=trmB PE=3 SV=1
Length = 209
Score = 64.7 bits (156), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 90/179 (50%), Gaps = 18/179 (10%)
Query: 100 MLPGVSALDRAFPFDID----WSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGL 155
M V+ L + F F+ID + + +P PL +DIG +G FL+ ++ K K+ N++G+
Sbjct: 1 MRQHVNPLSKNF-FEIDPIPPLNEVFENPQLPLHLDIGCASGDFLMELSLKNKNWNYIGI 59
Query: 156 E----LVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLIL-----VSIQCPNPD 206
E LV + ++ N YF NA + I+ + K ++ +S P+P
Sbjct: 60 EIREKLVLNANLKIKNREYKNVYFSFGNAIN----ILNNTNNKTLIDAITSISFYFPDPW 115
Query: 207 FNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQD 265
F + H+ R++Q + +S+ + +F+++D++E+ M+ LE K K + +D
Sbjct: 116 FKKKHHKRRVIQPEFINLLSNAMRTRSLIFIKTDVQELFEYMELTILESLKFKKLAYED 174
>sp|Q7VDU8|TRMB_PROMA tRNA (guanine-N(7)-)-methyltransferase OS=Prochlorococcus marinus
(strain SARG / CCMP1375 / SS120) GN=trmB PE=3 SV=1
Length = 213
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 89/189 (47%), Gaps = 17/189 (8%)
Query: 127 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEL-----VTHCRDSLQLSGITNGYFIATNAT 181
P+ +DIG G FL+ MA NFLG+E+ ++ ++L G+TN F NA
Sbjct: 31 PIHLDIGCARGKFLIDMAADNAQWNFLGVEIREPLVFAAEKERIEL-GLTNLRFFFCNAN 89
Query: 182 STFRSIVASYP-GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 240
+ S G+L VSIQ P+P F + + R++ +S + ++ L ++F+QSD
Sbjct: 90 ISLEKWFLSLENGQLKRVSIQFPDPWFKKRHRKRRVLNQSFLFLLAQSLDIGSELFIQSD 149
Query: 241 IEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQG-GWLGENSFGVRSDWEQHVIDRGAPM 299
+ VM M + ++ + D + L N F ++ E++ I +G +
Sbjct: 150 VISVMDEMTE---------IIELSHFFDRHSKYSESNLNANPFKFCTEREKYAIHQGVKV 200
Query: 300 YRLMLSKPS 308
YR + + S
Sbjct: 201 YRQLYFRNS 209
>sp|B1MZE7|TRMB_LEUCK tRNA (guanine-N(7)-)-methyltransferase OS=Leuconostoc citreum
(strain KM20) GN=trmB PE=3 SV=1
Length = 219
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 94/220 (42%), Gaps = 34/220 (15%)
Query: 109 RAFPFDIDWSAAYHD--------------------PAQPLVVDIGSGNGLFLLGMARKRK 148
RA P+ DW AA+ D AQP+ V+IGSG G F+LGMA
Sbjct: 4 RAKPWATDWLAAHSDIVITQGRATEQIGQWQKLFAKAQPIHVEIGSGKGQFILGMALAHP 63
Query: 149 DLNFLGLEL-----VTHCRDSL-QLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQC 202
++N++G+E+ R S Q+ + N +I N + + I ++
Sbjct: 64 EINYIGMEIQETAVAIAARKSFDQVGELPNLRYIYGNGNGV-ETYFEKAEVEKIYLNFSD 122
Query: 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 262
P P R E R R+ ++ +++ +L G+V ++D + F+ YG +
Sbjct: 123 PWPK-TRHESR-RLTYKTFLQSYEAVLPEHGEVEFKTDNRHLFEYSIVSFMNYGM-RWAT 179
Query: 263 VQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRL 302
D + +G V +++EQ + +G P+Y++
Sbjct: 180 TDFTLDLHADAEKVIG----NVETEYEQKFMAKGQPIYKI 215
>sp|Q3AMX6|TRMB_SYNSC tRNA (guanine-N(7)-)-methyltransferase OS=Synechococcus sp. (strain
CC9605) GN=trmB PE=3 SV=1
Length = 234
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 88/190 (46%), Gaps = 17/190 (8%)
Query: 124 PAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLE----LVTHC-RDSLQLSGITNGYFIAT 178
P QP+ +DIG G LLG+A + N LG+E LVT RD+L S N +
Sbjct: 28 PDQPIHLDIGCARGRCLLGLAERDPHWNHLGVEIRRPLVTSADRDAL-ASEHGNVRILFC 86
Query: 179 NATSTFRS-IVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGK-VF 236
NA + + A +L VSIQ P+P F R HR R V + + + G+ +F
Sbjct: 87 NANISLEGWMKALKQDQLQRVSIQFPDPWFKR-RHRKRRVLQPALLLAIATALQPGRELF 145
Query: 237 LQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRG 296
LQSD+ V+ M +L D +Q W N V ++ E++V+ +
Sbjct: 146 LQSDVLNVIEPM------VALTELSACFDR--PVEDQRHWRASNPLSVPTERERYVLKQN 197
Query: 297 APMYRLMLSK 306
P+YR++ +
Sbjct: 198 LPVYRVLYRR 207
>sp|B6EMU1|TRMB_ALISL tRNA (guanine-N(7)-)-methyltransferase OS=Aliivibrio salmonicida
(strain LFI1238) GN=trmB PE=3 SV=1
Length = 238
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 68/138 (49%), Gaps = 7/138 (5%)
Query: 115 IDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGI 170
+DW+ + + P+V++IG G G L+ MA+K D+NFLG+E+ V C + + +G+
Sbjct: 53 LDWNEVFGN-NNPVVLEIGFGMGASLVEMAQKAPDVNFLGIEVHRPGVGACLAAAKEAGV 111
Query: 171 TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLV 230
TN + +A F S++ + + + P+P H+ R+V+ E + L
Sbjct: 112 TNLRVMCHDAVEVFESMIPD--SSVTTLQLFFPDPWHKARHHKRRIVKAEFAEMIRPKLN 169
Query: 231 HDGKVFLQSDIEEVMLRM 248
+G + +D E M
Sbjct: 170 AEGVFHMATDWENYAEHM 187
>sp|Q5KW28|TRMB_GEOKA tRNA (guanine-N(7)-)-methyltransferase OS=Geobacillus kaustophilus
(strain HTA426) GN=trmB PE=3 SV=1
Length = 217
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 90/196 (45%), Gaps = 30/196 (15%)
Query: 122 HDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGITNGYFIA 177
HD QPL V+IG+G G F+ MA+ D+NF+G+EL + D L SG+ N +
Sbjct: 37 HD--QPLHVEIGTGKGKFITEMAKLHPDVNFIGIELYPSVLVSALDKLIESGLANVKLLN 94
Query: 178 TNATSTFRSIVASYP-GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF 236
NA + + A + G++ + + +P + + R+ R + +L DG +
Sbjct: 95 ANA----KDLTAFFADGEVSRIYLNFSDPWPKKRHEKRRLTYRDFLALYDRILAEDGDIH 150
Query: 237 LQSDIEEVMLRMKQQFLEYGKGKL-----VLVQDECDTKTNQGGWLGENSFGVRSDWEQH 291
L++D Q F EY L VL + D +Q G + +N V +++E+
Sbjct: 151 LKTD--------NQSFFEYSLVSLSQYGFVLASVQLD--LHQSG-MTDN---VMTEYEEK 196
Query: 292 VIDRGAPMYRLMLSKP 307
+G +YR +P
Sbjct: 197 FSAKGNRIYRCEAVRP 212
>sp|Q03WU9|TRMB_LEUMM tRNA (guanine-N(7)-)-methyltransferase OS=Leuconostoc mesenteroides
subsp. mesenteroides (strain ATCC 8293 / NCDO 523)
GN=trmB PE=3 SV=1
Length = 219
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 93/209 (44%), Gaps = 31/209 (14%)
Query: 108 DRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLE-----LVTHCR 162
DRA W + + D QP+ ++IGSG G F+LGMA ++N++G+E + R
Sbjct: 24 DRATAQIGQWQSLF-DQEQPIHLEIGSGKGQFILGMALAHPEINYIGMEIQETAIAIAAR 82
Query: 163 DSL-QLSGITNGYFIATNATSTFRSIVASY--PGKLILVSIQCPNPDFNRPEHRWRMVQR 219
S Q+ + N +I N V +Y G++ V + +P + R+ +
Sbjct: 83 KSFDQVGTLPNLRYIYGNGNG-----VETYFEKGEVSKVYLNFSDPWPKKRHESRRLTYK 137
Query: 220 SLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG------KGKLVLVQDECDTKTNQ 273
S +++ +L G+V ++D + F++YG L L DE + N
Sbjct: 138 SFLKSYEAVLPEHGEVEFKTDNRHLFEYSMVSFMDYGMRWTPEDYTLDLHADEDKVQGN- 196
Query: 274 GGWLGENSFGVRSDWEQHVIDRGAPMYRL 302
V +++EQ + +G P+Y++
Sbjct: 197 ----------VETEYEQKFMAKGQPIYKI 215
>sp|A7MTN8|TRMB_VIBHB tRNA (guanine-N(7)-)-methyltransferase OS=Vibrio harveyi (strain
ATCC BAA-1116 / BB120) GN=trmB PE=3 SV=1
Length = 239
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 8/139 (5%)
Query: 115 IDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGI 170
+DW + + P+V++IG G G L+ MA+ + NF+G+E+ V C + +GI
Sbjct: 53 LDWKEVFGN-DNPVVLEIGFGMGASLVEMAKNAPEKNFIGIEVHSPGVGACLADAREAGI 111
Query: 171 TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAV-SDLL 229
TN + +A F ++ + G L + + P+P + H+ R+VQ E V L+
Sbjct: 112 TNLRVMCHDAVEVFEHMIPN--GSLATLQLFFPDPWHKKRHHKRRIVQLEFAEMVRQKLI 169
Query: 230 VHDGKVFLQSDIEEVMLRM 248
+++G + +D E M
Sbjct: 170 LNEGIFHMATDWENYAEHM 188
>sp|Q8G3T4|TRMB_BIFLO tRNA (guanine-N(7)-)-methyltransferase OS=Bifidobacterium longum
(strain NCC 2705) GN=trmB PE=3 SV=1
Length = 286
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 79/170 (46%), Gaps = 17/170 (10%)
Query: 88 SGSAVWEFLKGRML---PGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMA 144
+G+ + + G +L GV+ LDRAF + W PL+V+IG+G G ++ A
Sbjct: 52 AGTYLLDIAAGNLLDVREGVT-LDRAF-VESAWGND-----NPLIVEIGTGQGENVVAAA 104
Query: 145 RKRKDLNFLGLEL----VTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200
+ NFL LE+ V H G+TN NA F+ A G + V
Sbjct: 105 AAHPETNFLALEVYDPGVAHTLLLAGKQGLTNIRVAQVNAPELFKVTAA---GTVAEVWT 161
Query: 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQ 250
P+P + H+ R+VQ+++ + LV DG + +DIE+ L + +
Sbjct: 162 FFPDPWPKKKHHKRRIVQKAMAGDIHRALVTDGVWRIATDIEDYALHVHE 211
>sp|C0ZHY5|TRMB_BREBN tRNA (guanine-N(7)-)-methyltransferase OS=Brevibacillus brevis
(strain 47 / JCM 6285 / NBRC 100599) GN=trmB PE=3 SV=1
Length = 214
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 99/228 (43%), Gaps = 29/228 (12%)
Query: 96 LKGRMLPGVSALDRAFPFDID--------WSAAYHDPAQPLVVDIGSGNGLFLLGMARKR 147
++ R +PG A R +P +D W + + P+ V+IG G G F+ +A +
Sbjct: 1 MRLRNIPGAEAALREYPTFVDNPLFYKGNWKERFGN-NNPIHVEIGCGKGRFINTLAERH 59
Query: 148 KDLNFLGLEL----VTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203
D+NF+ +EL V + I N F+ +A S + A + I ++ P
Sbjct: 60 PDINFIAVELKAEVVLRAVQRTEYKAIPNLAFVQYDA-SKLTELFADHEISRIYLNFSDP 118
Query: 204 NPDFNRPEH-RWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 262
P + H + R+ +S + +LV DG++ +++D E + QF + +
Sbjct: 119 WP---KTRHAKRRLTYKSFLNTYRQVLVADGELHMKTDNENLFEFSLNQF---AAERFQM 172
Query: 263 VQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPSCV 310
D +Q +N V +++E+ RG +YR+ + SCV
Sbjct: 173 RNITFD--LHQSKLAADN---VMTEYEERFSSRGQRIYRV---EASCV 212
>sp|Q9X027|TRMB_THEMA tRNA (guanine-N(7)-)-methyltransferase OS=Thermotoga maritima
(strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
GN=trmB PE=3 SV=1
Length = 313
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 8/137 (5%)
Query: 111 FP-FDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSL 165
FP F +DWS + A+ +VV+IG GNG FL +AR+ + +F+G E+ +
Sbjct: 13 FPRFPLDWSEIFGRKAK-IVVEIGFGNGEFLAELARRHPEKDFVGFEVSITSFVKAQKKF 71
Query: 166 QLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAV 225
+ + N + +A R + + + ++ CP P R E R R+ ++ +
Sbjct: 72 KRYNLKNVRLVKVDARFGLRELFPDNSVEKVYINFPCPWPK-KRHESR-RITSYDFLQTL 129
Query: 226 SDLLVHDGKVFLQSDIE 242
S +L DG V +D E
Sbjct: 130 SAVLEMDGTVEFATDEE 146
>sp|Q89A46|TRMB_BUCBP tRNA (guanine-N(7)-)-methyltransferase OS=Buchnera aphidicola
subsp. Baizongia pistaciae (strain Bp) GN=trmB PE=3 SV=1
Length = 242
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 99/219 (45%), Gaps = 31/219 (14%)
Query: 94 EFLKGRMLPGVSALDRAFPFDIDWSAAY------HDPAQPLVVDIGSGNGLFLLGMARKR 147
+FLK +L + ID+S +Y + P++++IG G G FL+ MARK
Sbjct: 33 QFLKNYLLK----------YGIDFSCSYVNFNFIFNNEYPVILEIGFGTGEFLINMARKN 82
Query: 148 KDLNFLGLEL----VTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203
NFLG+E+ + C + + N I +A ++++ L V I P
Sbjct: 83 LFSNFLGIEVYIPSILSCLRYIHKYNLPNVKVIFYDAVEVISYMISN--NSLSEVYILFP 140
Query: 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLV 263
+P R H+ R++ + L+E + LV G + + +D ++ + +E KG + L
Sbjct: 141 DPWPKRRHHKRRIITKELLEVILKKLVFGGYLNIATDC-QIYAKSILNIIENIKGYINL- 198
Query: 264 QDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRL 302
+N G ++ + + + + +E+ + G ++ L
Sbjct: 199 -------SNTGDYVIRSDYRLVTKFEKKGLVLGNKIFNL 230
>sp|A8G2P9|TRMB_PROM2 tRNA (guanine-N(7)-)-methyltransferase OS=Prochlorococcus marinus
(strain MIT 9215) GN=trmB PE=3 SV=1
Length = 209
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 66/136 (48%), Gaps = 5/136 (3%)
Query: 118 SAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLE----LVTHCRDSLQLSGITNG 173
S + D L +DIG G FL +A N+LG+E LV + + + I N
Sbjct: 22 SEMFGDSKLNLHLDIGCAAGEFLFNLASVNTSWNYLGIEIREKLVKNAKLKVFEREIKNL 81
Query: 174 YFIATNATSTFRSIVASYPGKLIL-VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD 232
YF+ NA + + + Y + I +S P+P F + ++ R++Q + +S+ L
Sbjct: 82 YFVFGNANNILNDVQSKYIIRNIKSISFNFPDPWFKKRHYKRRVIQPEFINVLSNQLQKG 141
Query: 233 GKVFLQSDIEEVMLRM 248
+F+++D++E+ M
Sbjct: 142 TLIFIKTDVKELFDYM 157
>sp|B4Q1B6|TRMB_DROYA tRNA (guanine-N(7)-)-methyltransferase OS=Drosophila yakuba
GN=GE16980 PE=3 SV=1
Length = 256
Score = 54.7 bits (130), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 70/150 (46%), Gaps = 17/150 (11%)
Query: 110 AFPFDIDWSAAYHDPAQPLVV---DIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD--- 163
A P D+DW + Y Q V DIG G G FL+ + + +G+E+ D
Sbjct: 53 ARPEDVDWRSMYPSIQQGQQVSFADIGCGYGGFLITLGEMFPEKLSIGMEIRVKVSDYVV 112
Query: 164 ----SLQLSGITNGYF-----IATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRW 214
+L+ G G + + TNA + A G+L + P+P F R +H+W
Sbjct: 113 DRIAALRRKGADTGAYQNVACLRTNAMKYLPNYFAK--GQLEKMFFLYPDPHFKRAKHKW 170
Query: 215 RMVQRSLVEAVSDLLVHDGKVFLQSDIEEV 244
R++ ++L+ + +L G V+ +D+E++
Sbjct: 171 RIINQALLSEYAYVLRKGGLVYTMTDVEDL 200
>sp|B7GP38|TRMB_BIFLS tRNA (guanine-N(7)-)-methyltransferase OS=Bifidobacterium longum
subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM
1222 / NCTC 11817 / S12) GN=trmB PE=3 SV=1
Length = 286
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 7/129 (5%)
Query: 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGITNGYFIATNAT 181
PL+V+IG+G G ++ A + NFL LE+ V H G+TN NA
Sbjct: 86 NPLIVEIGTGQGENVVAAAAAHPETNFLALEVYDPGVAHTLLLAGKQGLTNIRVAQVNAP 145
Query: 182 STFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 241
F+ + PG V P+P + H+ R+VQ ++ + L DG + +DI
Sbjct: 146 ELFK---VTAPGTAAEVWTFFPDPWPKKKHHKRRIVQEAMAGDIHRALAADGVWRIATDI 202
Query: 242 EEVMLRMKQ 250
E+ L + +
Sbjct: 203 EDYALHVHE 211
>sp|A0KNV5|TRMB_AERHH tRNA (guanine-N(7)-)-methyltransferase OS=Aeromonas hydrophila
subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=trmB
PE=3 SV=1
Length = 231
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Query: 127 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGITNGYFIATNATS 182
P+V++IG G G L+ MA+ + NF+G+E+ V C + Q +G+TN I +A
Sbjct: 57 PVVLEIGFGMGASLVEMAKNAPEKNFIGIEVHSPGVGACLGTAQEAGVTNLRVICHDAVE 116
Query: 183 TFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE 242
++ + G L + + P+P H+ R+VQ + V+ + L G + +D E
Sbjct: 117 VLEHMIPN--GSLACLQLFFPDPWHKSRHHKRRIVQPAFVQDIRQKLAIGGVFHMATDWE 174
Query: 243 EVMLRM 248
M
Sbjct: 175 NYAEHM 180
>sp|B4N278|TRMB_DROWI tRNA (guanine-N(7)-)-methyltransferase OS=Drosophila willistoni
GN=GK16167 PE=3 SV=1
Length = 251
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 73/152 (48%), Gaps = 19/152 (12%)
Query: 110 AFPFDIDWSAAYHD--PAQPL-VVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD--- 163
A P D+DWSA Y + P Q + DIG G G FL+ + +G+E+ D
Sbjct: 46 ARPEDVDWSALYPNIQPDQQVEFADIGCGYGGFLVTLGEMFPQKLSIGMEIRVKVSDYVV 105
Query: 164 ----SLQL-SGITNG------YFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEH 212
+L+L SG NG I TNA + G+L + P+P F R +H
Sbjct: 106 DRIAALRLKSGKLNGDAYKNIACIRTNAMKYLPNYFRK--GQLEKMFFLYPDPHFKRAKH 163
Query: 213 RWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV 244
+WR++ ++L+ + +L G V+ +D+E++
Sbjct: 164 KWRIINQALLSEYAYVLRQGGLVYTMTDVEDL 195
>sp|Q6LML0|TRMB_PHOPR tRNA (guanine-N(7)-)-methyltransferase OS=Photobacterium profundum
GN=trmB PE=3 SV=1
Length = 245
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 7/138 (5%)
Query: 115 IDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGI 170
+DW Y+ A P+V++IG G G L+ MA+ + +F+G+E+ V C + +G+
Sbjct: 60 LDWKEVYNREA-PIVLEIGFGMGASLVEMAKHAPEKDFIGIEVHSPGVGACLMGAEETGL 118
Query: 171 TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLV 230
TN + +A F ++ G L V + P+P H+ R+VQ + E + L
Sbjct: 119 TNLRVMCHDAVEVFDYMIPD--GSLETVQLFFPDPWHKTRHHKRRIVQPAFAEMLRKKLK 176
Query: 231 HDGKVFLQSDIEEVMLRM 248
G + +D E M
Sbjct: 177 IGGTFHMATDWENYAEHM 194
>sp|A5UGF0|TRMB_HAEIG tRNA (guanine-N(7)-)-methyltransferase OS=Haemophilus influenzae
(strain PittGG) GN=trmB PE=3 SV=1
Length = 246
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
Query: 112 PFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT----HCRDSLQL 167
PFD A + P+V++IG G G L+ MA D N+LG+E+ T C
Sbjct: 61 PFDF---AKIYGNDNPVVLEIGFGMGKSLVDMAFANPDKNYLGIEVHTPGVGACIAYAVE 117
Query: 168 SGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSD 227
G+TN I +AT R +A G L + + P+P H+ R+VQ V V
Sbjct: 118 KGVTNLRVICHDATEILRDSIAD--GTLGGLQLFFPDPWHKAKHHKRRIVQPHFVTQVIQ 175
Query: 228 LLVHDGKVFLQSDIEEVMLRM 248
L +G + + +D E +M
Sbjct: 176 KLSENGFIHMATDWENYAEQM 196
>sp|Q8DVQ4|TRMB_STRMU tRNA (guanine-N(7)-)-methyltransferase OS=Streptococcus mutans
serotype c (strain ATCC 700610 / UA159) GN=trmB PE=3
SV=1
Length = 211
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 86/181 (47%), Gaps = 16/181 (8%)
Query: 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGITNGYFIATNAT 181
P+ +++GSG G F+ GMA K +N++G+++ ++H D + S + N + + +
Sbjct: 39 HPIHIEVGSGKGRFITGMAAKNPQINYIGIDIQVSVLSHALDKVLDSQLPNVKLMLADGS 98
Query: 182 STFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 241
S G++ L+ + +P + + R+ +S ++ +L G++ ++D
Sbjct: 99 SLMHYFAD---GEIDLLYLNFSDPWPKKRHEKRRLTYKSFLDTYKKILPEKGEIHFKTDN 155
Query: 242 EEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYR 301
E+ F +YG ++L Q D + EN+ V +++E+ +G +YR
Sbjct: 156 RELFEYSLASFSQYG---MILEQVWLDLHASD----YENN--VMTEYEEKFSQKGQVIYR 206
Query: 302 L 302
+
Sbjct: 207 V 207
>sp|B5F9R5|TRMB_VIBFM tRNA (guanine-N(7)-)-methyltransferase OS=Vibrio fischeri (strain
MJ11) GN=trmB PE=3 SV=1
Length = 238
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 65/132 (49%), Gaps = 7/132 (5%)
Query: 115 IDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGI 170
+DW+ + + P+V++IG G G L+ MA+ + NFLG+E+ V C + + +G+
Sbjct: 53 LDWNEVFGN-NNPVVLEIGFGMGASLVEMAKNAPEKNFLGIEVHRPGVGACLAAAKEAGV 111
Query: 171 TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLV 230
TN + +A F S++ + + + P+P H+ R+V+ E + L+
Sbjct: 112 TNLRVMCHDAVEVFESMIPD--SSVNTLQLFFPDPWHKARHHKRRIVKAEFAEMIRPKLI 169
Query: 231 HDGKVFLQSDIE 242
G + +D E
Sbjct: 170 QGGIFHMATDWE 181
>sp|Q87LI7|TRMB_VIBPA tRNA (guanine-N(7)-)-methyltransferase OS=Vibrio parahaemolyticus
serotype O3:K6 (strain RIMD 2210633) GN=trmB PE=3 SV=1
Length = 239
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 115 IDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGI 170
+DW + + P+V++IG G G L+ MA+ + NF G+E+ V C + +GI
Sbjct: 53 LDWKEVFGN-DNPVVLEIGFGMGASLVEMAKNAPEKNFFGIEVHSPGVGACLSDAREAGI 111
Query: 171 TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLV 230
TN + +A F ++ + L + + P+P + H+ R+VQ E V L+
Sbjct: 112 TNLRVMCHDAVEVFEHMIPN--DSLATLQLFFPDPWHKKRHHKRRIVQLEFAEMVRQKLI 169
Query: 231 HDGKVF 236
+ +F
Sbjct: 170 PNEGIF 175
>sp|C3LRX0|TRMB_VIBCM tRNA (guanine-N(7)-)-methyltransferase OS=Vibrio cholerae serotype
O1 (strain M66-2) GN=trmB PE=3 SV=1
Length = 239
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 8/142 (5%)
Query: 112 PFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQL 167
P +DW + + P+V++IG G G L+ MA+ + NFLG+E+ V C S +
Sbjct: 50 PELLDWQQVFGN-DNPVVLEIGFGMGASLVEMAKNAPEKNFLGIEVHSPGVGACLASARE 108
Query: 168 SGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAV-S 226
+G+TN + +A F ++ L + + P+P + H+ R+VQ E V
Sbjct: 109 AGVTNLRVMCHDAVEVFAHMIPD--NSLHTLQLFFPDPWHKKRHHKRRIVQLEFAEMVRQ 166
Query: 227 DLLVHDGKVFLQSDIEEVMLRM 248
L++ G + +D E M
Sbjct: 167 KLMIGSGVFHMATDWENYAEHM 188
>sp|Q9KUR2|TRMB_VIBCH tRNA (guanine-N(7)-)-methyltransferase OS=Vibrio cholerae serotype
O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=trmB
PE=3 SV=1
Length = 239
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 8/142 (5%)
Query: 112 PFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQL 167
P +DW + + P+V++IG G G L+ MA+ + NFLG+E+ V C S +
Sbjct: 50 PELLDWQQVFGN-DNPVVLEIGFGMGASLVEMAKNAPEKNFLGIEVHSPGVGACLASARE 108
Query: 168 SGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAV-S 226
+G+TN + +A F ++ L + + P+P + H+ R+VQ E V
Sbjct: 109 AGVTNLRVMCHDAVEVFAHMIPD--NSLHTLQLFFPDPWHKKRHHKRRIVQLEFAEMVRQ 166
Query: 227 DLLVHDGKVFLQSDIEEVMLRM 248
L++ G + +D E M
Sbjct: 167 KLMIGSGVFHMATDWENYAEHM 188
>sp|A5F9I8|TRMB_VIBC3 tRNA (guanine-N(7)-)-methyltransferase OS=Vibrio cholerae serotype
O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=trmB PE=3
SV=1
Length = 239
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 62/129 (48%), Gaps = 7/129 (5%)
Query: 112 PFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQL 167
P +DW + + P+V++IG G G L+ MA+ + NFLG+E+ V C S +
Sbjct: 50 PELLDWQQVFGN-DNPVVLEIGFGMGASLVEMAKNAPEKNFLGIEVHSPGVGACLASARE 108
Query: 168 SGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSD 227
+G+TN + +A F ++ L + + P+P + H+ R+VQ E V
Sbjct: 109 AGVTNLRVMCHDAVEVFAHMIPD--NSLHTLQLFFPDPWHKKRHHKRRIVQLEFAEMVRQ 166
Query: 228 LLVHDGKVF 236
L+ VF
Sbjct: 167 KLIIGSGVF 175
>sp|P44648|TRMB_HAEIN tRNA (guanine-N(7)-)-methyltransferase OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=trmB PE=1
SV=1
Length = 246
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
Query: 112 PFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT----HCRDSLQL 167
PFD A + P+V++IG G G L+ MA D N+LG+E+ T C
Sbjct: 61 PFDF---AKIYGNDNPVVLEIGFGMGKSLVDMAFANPDKNYLGIEVHTPGVGACIAYAVE 117
Query: 168 SGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSD 227
G+TN I +AT R +A G L + + P+P H+ R+VQ V V
Sbjct: 118 KGVTNLRVICHDATEILRDSIAD--GALGGLQLFFPDPWHKAKHHKRRIVQPHFVTQVIQ 175
Query: 228 LLVHDGKVFLQSDIEEVMLRM 248
L +G + + +D E +M
Sbjct: 176 KLGENGFIHMATDWENYAEQM 196
>sp|Q4QNK0|TRMB_HAEI8 tRNA (guanine-N(7)-)-methyltransferase OS=Haemophilus influenzae
(strain 86-028NP) GN=trmB PE=3 SV=1
Length = 246
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
Query: 112 PFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT----HCRDSLQL 167
PFD A + P+V++IG G G L+ MA D N+LG+E+ T C
Sbjct: 61 PFDF---AKIYGNDNPIVLEIGFGMGKSLVDMAFANPDKNYLGIEVHTPGVGACIAYAVE 117
Query: 168 SGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSD 227
G+TN I +AT R +A G L + + P+P H+ R+VQ V V
Sbjct: 118 KGVTNLRVICHDATEILRDSIAD--GALGGLQLFFPDPWHKAKHHKRRIVQPHFVTQVIQ 175
Query: 228 LLVHDGKVFLQSDIEEVMLRM 248
L +G + + +D E +M
Sbjct: 176 KLGKNGFIHMATDWENYAEQM 196
>sp|A7Z7T3|TRMB_BACA2 tRNA (guanine-N(7)-)-methyltransferase OS=Bacillus
amyloliquefaciens (strain FZB42) GN=trmB PE=3 SV=1
Length = 217
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 90/199 (45%), Gaps = 29/199 (14%)
Query: 120 AYHDPAQ-------------PLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCR 162
A DPAQ P+ +++G+G G F+ GMA++ D+N++G+EL +
Sbjct: 20 AISDPAQYKGRWNTVFGNDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAV 79
Query: 163 DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLV 222
++ SG N + +A T + K + ++ P P NR E R R+ ++ +
Sbjct: 80 QKVKDSGAHNVRLLNIDA-ETLNDVFERGEIKRVYLNFSDPWPK-NRHEKR-RLTFKTFL 136
Query: 223 EAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSF 282
+ +++ G++ ++D + + F EYG L+L + D + +
Sbjct: 137 KKYEEVMGETGEIHFKTDNRGLFEYSLKSFSEYG---LLLTEVSLDLHNS------DPKG 187
Query: 283 GVRSDWEQHVIDRGAPMYR 301
+ +++E+ G P+YR
Sbjct: 188 NIMTEYEEKFSALGQPIYR 206
>sp|A0LXL4|TRMB_GRAFK tRNA (guanine-N(7)-)-methyltransferase OS=Gramella forsetii (strain
KT0803) GN=trmB PE=3 SV=1
Length = 224
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 88/197 (44%), Gaps = 14/197 (7%)
Query: 108 DRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV-----THCR 162
D F WS + P+V+++G G G + + +ARK D NF+G+++ +
Sbjct: 29 DNVFELKGKWSENFFKNDHPIVLELGCGKGEYTVELARKNPDKNFIGIDIKGARFWRGAK 88
Query: 163 DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLV 222
+L+ G+ N FI T + A+ I ++ P + R +H R+ +
Sbjct: 89 TALE-EGLDNVAFIRT-QIELIEYVFATNEVSEIWITFPDPQIKYKRTKH--RLTNTDFL 144
Query: 223 EAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSF 282
+ ++L DG + L++D E + L +G+G +L D N+ + +
Sbjct: 145 QRYKNVLKQDGIMHLKTDSE--FMHGYTLGLLHGEGHEILYA-HHDIYKNE--YSPKEVT 199
Query: 283 GVRSDWEQHVIDRGAPM 299
G+++ +E ++ G P+
Sbjct: 200 GIQTFYENQYLENGKPI 216
>sp|A2BP39|TRMB_PROMS tRNA (guanine-N(7)-)-methyltransferase OS=Prochlorococcus marinus
(strain AS9601) GN=trmB PE=3 SV=1
Length = 209
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 65/131 (49%), Gaps = 5/131 (3%)
Query: 123 DPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLE----LVTHCRDSLQLSGITNGYFIAT 178
D L +DIG G FL +A N+LG+E LV + + + S I N YF+
Sbjct: 27 DSKLNLHLDIGCAAGEFLFDLALVNTSWNYLGIEIREKLVKNAKLKVLESEIKNLYFLFG 86
Query: 179 NATSTFRSIVASYPGK-LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237
NA + + + K L +S P+P F + ++ R++Q + +S+LL +F+
Sbjct: 87 NANNILNDVQSELIIKNLKSISFYFPDPWFKKRHYKRRVIQPEFINILSNLLQKGTLIFI 146
Query: 238 QSDIEEVMLRM 248
++D++++ M
Sbjct: 147 KTDVKDLFDYM 157
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,784,668
Number of Sequences: 539616
Number of extensions: 4506774
Number of successful extensions: 11026
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 433
Number of HSP's that attempted gapping in prelim test: 10462
Number of HSP's gapped (non-prelim): 790
length of query: 311
length of database: 191,569,459
effective HSP length: 117
effective length of query: 194
effective length of database: 128,434,387
effective search space: 24916271078
effective search space used: 24916271078
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)