Query 021567
Match_columns 311
No_of_seqs 282 out of 2778
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 04:00:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021567.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021567hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02390 Methyltransf_4: Putat 100.0 7.7E-39 1.7E-43 283.4 19.9 184 114-307 7-195 (195)
2 COG0220 Predicted S-adenosylme 100.0 1.8E-38 3.9E-43 286.2 20.6 186 114-308 37-226 (227)
3 TIGR00091 tRNA (guanine-N(7)-) 100.0 4.8E-33 1E-37 245.8 20.1 180 114-307 6-193 (194)
4 PRK14121 tRNA (guanine-N(7)-)- 100.0 3.1E-31 6.8E-36 254.9 21.7 172 118-308 115-290 (390)
5 PRK01544 bifunctional N5-gluta 100.0 1.4E-30 3E-35 260.5 15.5 179 100-292 321-505 (506)
6 PRK00121 trmB tRNA (guanine-N( 99.9 9.1E-25 2E-29 194.3 18.1 169 113-295 29-202 (202)
7 COG2226 UbiE Methylase involve 99.8 5.2E-19 1.1E-23 160.5 11.8 137 80-238 11-155 (238)
8 KOG3115 Methyltransferase-like 99.8 2.3E-19 5.1E-24 156.5 8.9 184 113-309 43-246 (249)
9 PF01209 Ubie_methyltran: ubiE 99.8 5.1E-18 1.1E-22 154.3 11.2 143 78-238 5-152 (233)
10 PLN02233 ubiquinone biosynthes 99.7 4E-16 8.8E-21 144.1 14.2 161 60-238 9-181 (261)
11 TIGR02752 MenG_heptapren 2-hep 99.6 1.1E-14 2.3E-19 131.3 16.1 143 78-239 3-151 (231)
12 KOG1540 Ubiquinone biosynthesi 99.6 5.8E-15 1.3E-19 133.3 12.8 132 80-238 60-213 (296)
13 PF08241 Methyltransf_11: Meth 99.6 1.4E-14 3.1E-19 111.0 9.0 94 130-237 1-95 (95)
14 PF12847 Methyltransf_18: Meth 99.5 3.2E-14 6.9E-19 113.4 10.0 104 126-239 2-111 (112)
15 PRK14103 trans-aconitate 2-met 99.5 2.5E-13 5.4E-18 124.7 15.3 98 125-239 29-126 (255)
16 PRK15451 tRNA cmo(5)U34 methyl 99.5 9.9E-14 2.1E-18 127.0 11.7 134 89-239 24-164 (247)
17 PRK00107 gidB 16S rRNA methylt 99.5 2E-13 4.3E-18 120.2 13.1 115 126-259 46-164 (187)
18 PF13847 Methyltransf_31: Meth 99.5 2.1E-13 4.5E-18 115.4 12.4 105 125-241 3-112 (152)
19 PRK05785 hypothetical protein; 99.5 2.6E-13 5.7E-18 122.8 13.8 135 81-237 10-146 (226)
20 PRK10258 biotin biosynthesis p 99.5 2.9E-13 6.3E-18 123.6 12.3 133 81-239 8-140 (251)
21 PRK01683 trans-aconitate 2-met 99.5 1E-12 2.2E-17 120.4 15.1 100 125-239 31-130 (258)
22 TIGR00740 methyltransferase, p 99.5 9.6E-13 2.1E-17 119.6 14.7 134 88-238 20-160 (239)
23 PRK11088 rrmA 23S rRNA methylt 99.4 5.6E-13 1.2E-17 123.6 11.3 106 125-251 85-193 (272)
24 PRK08287 cobalt-precorrin-6Y C 99.4 3.1E-12 6.8E-17 112.0 14.8 119 125-261 31-153 (187)
25 PLN02244 tocopherol O-methyltr 99.4 1E-12 2.2E-17 125.8 12.3 101 125-239 118-223 (340)
26 PLN02396 hexaprenyldihydroxybe 99.4 1.7E-12 3.7E-17 123.3 13.1 105 125-244 131-240 (322)
27 TIGR02072 BioC biotin biosynth 99.4 1.7E-12 3.7E-17 116.2 12.3 101 126-239 35-135 (240)
28 TIGR00138 gidB 16S rRNA methyl 99.4 2.3E-12 5E-17 112.9 12.6 116 126-260 43-165 (181)
29 PF05175 MTS: Methyltransferas 99.4 2.1E-12 4.6E-17 111.7 11.7 105 126-239 32-140 (170)
30 COG2227 UbiG 2-polyprenyl-3-me 99.4 1.5E-12 3.4E-17 117.2 10.7 109 125-253 59-175 (243)
31 PRK07402 precorrin-6B methylas 99.4 6.9E-12 1.5E-16 110.7 14.6 116 125-256 40-159 (196)
32 TIGR03534 RF_mod_PrmC protein- 99.4 8.8E-12 1.9E-16 113.1 15.6 133 126-265 88-242 (251)
33 PRK11036 putative S-adenosyl-L 99.4 3.9E-12 8.4E-17 116.8 12.5 101 125-239 44-149 (255)
34 TIGR03533 L3_gln_methyl protei 99.4 9.2E-12 2E-16 116.5 15.0 127 126-262 122-272 (284)
35 TIGR00537 hemK_rel_arch HemK-r 99.4 7.6E-12 1.6E-16 108.8 13.4 125 126-262 20-163 (179)
36 PF13649 Methyltransf_25: Meth 99.4 9.4E-13 2E-17 103.8 6.9 94 129-233 1-101 (101)
37 TIGR02469 CbiT precorrin-6Y C5 99.4 6.5E-12 1.4E-16 101.2 12.0 100 125-239 19-122 (124)
38 PRK04266 fibrillarin; Provisio 99.4 6.7E-12 1.4E-16 113.7 13.4 126 125-262 72-208 (226)
39 PF13659 Methyltransf_26: Meth 99.4 6E-12 1.3E-16 101.1 11.5 107 127-239 2-115 (117)
40 PLN02490 MPBQ/MSBQ methyltrans 99.4 7.8E-12 1.7E-16 119.5 13.5 125 125-262 113-254 (340)
41 PRK15001 SAM-dependent 23S rib 99.3 1.4E-11 3E-16 119.3 14.3 117 126-251 229-353 (378)
42 TIGR01934 MenG_MenH_UbiE ubiqu 99.3 1.9E-11 4.2E-16 108.5 13.9 138 83-239 2-143 (223)
43 PRK00377 cbiT cobalt-precorrin 99.3 2.3E-11 4.9E-16 107.7 14.3 119 125-258 40-164 (198)
44 COG2242 CobL Precorrin-6B meth 99.3 5.3E-11 1.1E-15 103.8 15.1 123 118-258 28-154 (187)
45 COG2519 GCD14 tRNA(1-methylade 99.3 2.2E-11 4.8E-16 110.6 13.2 117 125-260 94-216 (256)
46 TIGR03704 PrmC_rel_meth putati 99.3 2.7E-11 5.9E-16 111.3 13.8 131 126-262 87-238 (251)
47 PRK15068 tRNA mo(5)U34 methylt 99.3 1.4E-11 2.9E-16 117.3 12.2 100 125-239 122-226 (322)
48 PRK11873 arsM arsenite S-adeno 99.3 2E-11 4.3E-16 112.9 13.0 101 125-238 77-182 (272)
49 PTZ00098 phosphoethanolamine N 99.3 1.5E-11 3.2E-16 113.8 11.8 102 125-238 52-155 (263)
50 COG4123 Predicted O-methyltran 99.3 5.1E-11 1.1E-15 108.7 14.6 132 125-262 44-192 (248)
51 PRK11207 tellurite resistance 99.3 2.7E-11 5.8E-16 107.3 12.3 100 125-238 30-133 (197)
52 COG2890 HemK Methylase of poly 99.3 4E-11 8.8E-16 111.9 13.9 128 128-265 113-264 (280)
53 PRK14966 unknown domain/N5-glu 99.3 6.6E-11 1.4E-15 115.4 15.6 132 126-265 252-406 (423)
54 TIGR00536 hemK_fam HemK family 99.3 6.1E-11 1.3E-15 110.8 14.7 130 127-265 116-270 (284)
55 PRK09328 N5-glutamine S-adenos 99.3 8.3E-11 1.8E-15 108.5 15.3 129 125-262 108-260 (275)
56 PRK11805 N5-glutamine S-adenos 99.3 6E-11 1.3E-15 112.2 14.6 126 127-262 135-284 (307)
57 COG4106 Tam Trans-aconitate me 99.3 1.7E-11 3.6E-16 108.7 10.0 119 125-258 30-151 (257)
58 PF02353 CMAS: Mycolic acid cy 99.3 1.6E-11 3.5E-16 114.2 10.4 100 125-239 62-166 (273)
59 PF08242 Methyltransf_12: Meth 99.3 1.3E-12 2.8E-17 102.4 2.5 95 130-235 1-99 (99)
60 TIGR03840 TMPT_Se_Te thiopurin 99.3 1.9E-11 4.2E-16 109.8 10.4 102 125-239 34-152 (213)
61 PRK00216 ubiE ubiquinone/menaq 99.3 7.7E-11 1.7E-15 105.7 14.4 141 79-238 10-157 (239)
62 COG2230 Cfa Cyclopropane fatty 99.3 1.9E-11 4.2E-16 113.3 10.1 100 125-239 72-176 (283)
63 PRK08317 hypothetical protein; 99.3 5.1E-11 1.1E-15 106.4 12.0 101 125-238 19-123 (241)
64 PLN02336 phosphoethanolamine N 99.3 4.7E-11 1E-15 118.9 12.8 101 125-239 266-369 (475)
65 TIGR00080 pimt protein-L-isoas 99.3 4E-11 8.7E-16 107.4 10.9 96 125-239 77-177 (215)
66 PRK11188 rrmJ 23S rRNA methylt 99.2 8.5E-11 1.8E-15 105.2 12.0 108 125-239 51-165 (209)
67 PRK06922 hypothetical protein; 99.2 4.5E-11 9.7E-16 121.6 11.4 109 126-238 419-536 (677)
68 PF08704 GCD14: tRNA methyltra 99.2 1.6E-10 3.4E-15 105.9 13.5 120 125-260 40-167 (247)
69 PRK13255 thiopurine S-methyltr 99.2 4.1E-11 8.8E-16 108.0 9.5 96 125-237 37-153 (218)
70 PRK14967 putative methyltransf 99.2 2.6E-10 5.6E-15 102.8 14.6 125 125-259 36-179 (223)
71 TIGR00438 rrmJ cell division p 99.2 1.6E-10 3.4E-15 101.3 12.1 123 125-254 32-161 (188)
72 PRK14968 putative methyltransf 99.2 4.4E-10 9.4E-15 97.4 14.7 128 125-260 23-169 (188)
73 PRK01544 bifunctional N5-gluta 99.2 2.9E-10 6.2E-15 114.4 14.9 131 126-265 139-294 (506)
74 TIGR00477 tehB tellurite resis 99.2 1.8E-10 3.8E-15 101.9 11.9 98 126-238 31-132 (195)
75 KOG1271 Methyltransferases [Ge 99.2 9.8E-11 2.1E-15 101.3 9.8 123 125-259 67-200 (227)
76 PRK01581 speE spermidine synth 99.2 3E-10 6.5E-15 108.9 14.1 127 125-258 150-291 (374)
77 PF13489 Methyltransf_23: Meth 99.2 6.9E-11 1.5E-15 99.4 8.7 97 125-242 22-118 (161)
78 smart00138 MeTrc Methyltransfe 99.2 4.7E-11 1E-15 110.6 8.3 102 126-238 100-241 (264)
79 PRK13942 protein-L-isoaspartat 99.2 1.5E-10 3.2E-15 103.8 11.2 96 125-239 76-176 (212)
80 smart00828 PKS_MT Methyltransf 99.2 9E-11 2E-15 105.2 9.6 120 128-261 2-141 (224)
81 PRK00811 spermidine synthase; 99.2 2.8E-10 6.1E-15 106.4 13.2 123 125-255 76-211 (283)
82 TIGR00452 methyltransferase, p 99.2 1.4E-10 3.1E-15 109.8 11.4 100 125-239 121-225 (314)
83 PRK09489 rsmC 16S ribosomal RN 99.2 2.9E-10 6.3E-15 109.0 13.5 115 126-251 197-316 (342)
84 PRK13944 protein-L-isoaspartat 99.2 2.2E-10 4.9E-15 102.0 11.7 96 125-239 72-173 (205)
85 TIGR02716 C20_methyl_CrtF C-20 99.2 7.5E-10 1.6E-14 104.3 15.8 100 125-238 149-253 (306)
86 TIGR01177 conserved hypothetic 99.1 3.1E-10 6.8E-15 108.1 11.6 121 125-257 182-309 (329)
87 COG2813 RsmC 16S RNA G1207 met 99.1 7E-10 1.5E-14 103.4 13.5 123 121-253 154-281 (300)
88 PRK04457 spermidine synthase; 99.1 7.4E-10 1.6E-14 102.5 13.7 122 125-254 66-193 (262)
89 PRK00517 prmA ribosomal protei 99.1 7.1E-10 1.5E-14 101.7 13.3 113 125-262 119-236 (250)
90 PRK03612 spermidine synthase; 99.1 7.5E-10 1.6E-14 111.8 14.4 125 125-257 297-437 (521)
91 PRK12335 tellurite resistance 99.1 3.8E-10 8.2E-15 105.6 11.3 98 126-238 121-222 (287)
92 TIGR00406 prmA ribosomal prote 99.1 1.9E-09 4.1E-14 101.0 15.9 116 125-260 159-279 (288)
93 PTZ00146 fibrillarin; Provisio 99.1 1.5E-09 3.3E-14 101.4 14.5 124 125-260 132-267 (293)
94 PHA03411 putative methyltransf 99.1 1.1E-09 2.4E-14 101.4 13.1 124 126-258 65-208 (279)
95 PLN02336 phosphoethanolamine N 99.1 4.6E-10 9.9E-15 111.9 11.3 103 125-238 37-141 (475)
96 PF07021 MetW: Methionine bios 99.1 1.7E-09 3.6E-14 94.9 13.4 154 125-306 13-169 (193)
97 PLN03075 nicotianamine synthas 99.1 7.1E-10 1.5E-14 103.9 11.8 103 125-239 123-233 (296)
98 TIGR03438 probable methyltrans 99.1 7.4E-10 1.6E-14 104.4 11.7 109 126-241 64-179 (301)
99 TIGR03587 Pse_Me-ase pseudamin 99.1 1.5E-09 3.3E-14 96.8 12.6 98 125-237 43-140 (204)
100 KOG1270 Methyltransferases [Co 99.1 2.1E-10 4.5E-15 104.5 6.9 104 126-247 90-203 (282)
101 PRK11705 cyclopropane fatty ac 99.1 7.3E-10 1.6E-14 107.8 11.1 100 125-239 167-267 (383)
102 KOG1541 Predicted protein carb 99.1 1.2E-09 2.5E-14 97.3 11.1 124 125-257 50-180 (270)
103 PRK06202 hypothetical protein; 99.1 1.6E-09 3.5E-14 97.9 12.1 100 125-237 60-164 (232)
104 PF05401 NodS: Nodulation prot 99.1 9E-10 1.9E-14 96.9 9.8 106 121-239 39-146 (201)
105 PLN02366 spermidine synthase 99.1 2.9E-09 6.3E-14 100.7 13.9 124 125-255 91-226 (308)
106 KOG2361 Predicted methyltransf 99.1 3.3E-10 7.1E-15 102.0 6.9 147 89-253 35-193 (264)
107 cd02440 AdoMet_MTases S-adenos 99.0 2.4E-09 5.2E-14 81.3 10.7 99 128-238 1-103 (107)
108 TIGR00417 speE spermidine synt 99.0 2.8E-09 6.1E-14 98.9 12.7 122 126-255 73-206 (270)
109 PRK14901 16S rRNA methyltransf 99.0 3.3E-09 7.2E-14 104.8 14.0 114 125-239 252-384 (434)
110 PF03848 TehB: Tellurite resis 99.0 2.9E-09 6.3E-14 94.0 12.1 100 125-239 30-133 (192)
111 TIGR00446 nop2p NOL1/NOP2/sun 99.0 2.4E-09 5.2E-14 99.1 11.8 110 125-239 71-199 (264)
112 COG2264 PrmA Ribosomal protein 99.0 2.9E-09 6.3E-14 99.6 12.0 129 114-262 152-286 (300)
113 KOG4300 Predicted methyltransf 99.0 7.2E-10 1.6E-14 97.8 7.4 111 126-254 77-200 (252)
114 PRK00312 pcm protein-L-isoaspa 99.0 3.5E-09 7.7E-14 94.4 11.9 95 125-240 78-176 (212)
115 PRK15128 23S rRNA m(5)C1962 me 99.0 2E-08 4.3E-13 98.2 17.9 132 125-260 220-365 (396)
116 PRK14902 16S rRNA methyltransf 99.0 3E-09 6.5E-14 105.4 12.3 111 125-239 250-379 (444)
117 PLN02781 Probable caffeoyl-CoA 99.0 3.6E-09 7.8E-14 96.3 11.8 101 126-237 69-176 (234)
118 PRK13943 protein-L-isoaspartat 99.0 3.5E-09 7.5E-14 100.8 11.9 97 125-240 80-181 (322)
119 PRK10901 16S rRNA methyltransf 99.0 4.8E-09 1.1E-13 103.5 13.2 111 125-239 244-372 (427)
120 PLN02672 methionine S-methyltr 99.0 6.2E-09 1.3E-13 111.8 14.2 127 127-260 120-299 (1082)
121 TIGR02021 BchM-ChlM magnesium 99.0 6.4E-09 1.4E-13 93.1 11.4 147 125-304 55-206 (219)
122 PRK14904 16S rRNA methyltransf 99.0 7.7E-09 1.7E-13 102.6 12.9 109 125-239 250-377 (445)
123 PF01135 PCMT: Protein-L-isoas 98.9 3.9E-09 8.4E-14 94.6 9.1 96 125-239 72-172 (209)
124 PRK14903 16S rRNA methyltransf 98.9 6E-09 1.3E-13 102.9 11.3 111 125-239 237-366 (431)
125 PHA03412 putative methyltransf 98.9 8.4E-09 1.8E-13 93.6 11.2 100 126-234 50-158 (241)
126 TIGR01983 UbiG ubiquinone bios 98.9 2.1E-08 4.6E-13 89.6 13.6 103 126-242 46-152 (224)
127 PLN02585 magnesium protoporphy 98.9 3.3E-08 7.2E-13 93.8 15.5 148 125-305 144-300 (315)
128 PF06325 PrmA: Ribosomal prote 98.9 1.1E-08 2.3E-13 96.2 11.9 125 116-262 153-281 (295)
129 PRK13168 rumA 23S rRNA m(5)U19 98.9 1.5E-08 3.2E-13 100.5 13.5 122 125-262 297-422 (443)
130 PRK13256 thiopurine S-methyltr 98.9 1.1E-08 2.3E-13 92.7 11.4 100 125-239 43-163 (226)
131 PRK11783 rlmL 23S rRNA m(2)G24 98.9 1.2E-08 2.6E-13 106.5 13.0 129 126-262 539-678 (702)
132 PF01596 Methyltransf_3: O-met 98.9 1.4E-08 3.1E-13 90.7 11.5 101 126-237 46-153 (205)
133 TIGR00479 rumA 23S rRNA (uraci 98.9 2.6E-08 5.6E-13 98.3 13.9 122 125-261 292-417 (431)
134 PRK03522 rumB 23S rRNA methylu 98.9 2.6E-08 5.7E-13 94.4 12.3 115 126-260 174-292 (315)
135 TIGR02081 metW methionine bios 98.9 6.3E-08 1.4E-12 85.2 13.8 154 125-305 13-168 (194)
136 PRK10909 rsmD 16S rRNA m(2)G96 98.8 4.2E-08 9.2E-13 87.3 12.6 102 125-240 53-160 (199)
137 COG4122 Predicted O-methyltran 98.8 2.9E-08 6.4E-13 89.2 11.5 99 125-237 59-164 (219)
138 smart00650 rADc Ribosomal RNA 98.8 3E-08 6.5E-13 85.5 11.1 97 125-239 13-113 (169)
139 KOG3191 Predicted N6-DNA-methy 98.8 3.5E-08 7.7E-13 85.5 11.3 127 126-260 44-189 (209)
140 COG2518 Pcm Protein-L-isoaspar 98.8 2.2E-08 4.8E-13 89.1 10.4 94 125-239 72-169 (209)
141 TIGR02085 meth_trns_rumB 23S r 98.8 4.9E-08 1.1E-12 94.8 13.6 117 126-262 234-354 (374)
142 TIGR00563 rsmB ribosomal RNA s 98.8 5E-08 1.1E-12 96.2 12.6 112 125-239 238-368 (426)
143 KOG3010 Methyltransferase [Gen 98.8 9.4E-09 2E-13 92.7 6.6 106 114-237 20-135 (261)
144 PRK05134 bifunctional 3-demeth 98.8 4.3E-08 9.2E-13 88.4 10.7 101 125-240 48-152 (233)
145 PLN02476 O-methyltransferase 98.8 6.7E-08 1.5E-12 90.0 11.7 102 125-237 118-226 (278)
146 PF08003 Methyltransf_9: Prote 98.7 9E-08 1.9E-12 89.5 11.3 114 109-239 96-219 (315)
147 PRK07580 Mg-protoporphyrin IX 98.7 1.1E-07 2.4E-12 85.2 11.5 96 125-236 63-163 (230)
148 COG2263 Predicted RNA methylas 98.7 1.5E-07 3.3E-12 82.2 11.6 117 125-260 45-164 (198)
149 PF05724 TPMT: Thiopurine S-me 98.7 4.5E-08 9.8E-13 88.3 8.7 99 125-239 37-155 (218)
150 PRK11727 23S rRNA mA1618 methy 98.7 4.6E-07 9.9E-12 86.2 14.7 165 89-262 73-267 (321)
151 PLN02823 spermine synthase 98.7 3.7E-07 8E-12 87.4 14.0 125 125-255 103-242 (336)
152 KOG2904 Predicted methyltransf 98.6 2.9E-07 6.3E-12 84.6 11.4 124 126-251 149-297 (328)
153 PLN02589 caffeoyl-CoA O-methyl 98.6 3.4E-07 7.3E-12 84.1 11.8 101 126-237 80-188 (247)
154 KOG2899 Predicted methyltransf 98.6 2.3E-07 4.9E-12 83.9 10.4 128 126-255 59-228 (288)
155 COG4976 Predicted methyltransf 98.6 2.2E-08 4.8E-13 89.8 3.9 165 77-262 82-263 (287)
156 PF03291 Pox_MCEL: mRNA cappin 98.6 1.8E-07 3.8E-12 89.5 10.2 112 125-241 62-188 (331)
157 PRK05031 tRNA (uracil-5-)-meth 98.6 5.2E-07 1.1E-11 87.3 13.3 118 127-261 208-340 (362)
158 TIGR00095 RNA methyltransferas 98.6 6.7E-07 1.4E-11 78.9 12.3 104 125-240 49-160 (189)
159 PF01170 UPF0020: Putative RNA 98.6 6.7E-07 1.4E-11 78.2 11.4 112 125-244 28-155 (179)
160 PF00891 Methyltransf_2: O-met 98.6 4.6E-07 1E-11 82.3 10.5 96 125-238 100-198 (241)
161 TIGR02143 trmA_only tRNA (urac 98.5 1.3E-06 2.9E-11 84.2 13.2 111 127-252 199-324 (353)
162 KOG2915 tRNA(1-methyladenosine 98.5 2.3E-06 5E-11 78.6 12.4 125 125-265 105-236 (314)
163 PLN02232 ubiquinone biosynthes 98.4 4.7E-07 1E-11 77.6 7.0 73 153-238 1-80 (160)
164 COG2521 Predicted archaeal met 98.4 9.2E-07 2E-11 79.7 8.6 127 125-260 134-273 (287)
165 KOG1975 mRNA cap methyltransfe 98.4 1.4E-06 3.1E-11 81.7 10.1 124 121-250 114-248 (389)
166 PF01564 Spermine_synth: Sperm 98.4 2.7E-06 5.9E-11 78.1 12.0 123 125-255 76-211 (246)
167 KOG1499 Protein arginine N-met 98.4 1.1E-06 2.4E-11 83.4 9.5 97 125-236 60-164 (346)
168 PF02475 Met_10: Met-10+ like- 98.4 1.1E-06 2.4E-11 78.2 8.5 95 125-237 101-200 (200)
169 PRK04338 N(2),N(2)-dimethylgua 98.4 2.9E-06 6.3E-11 82.7 11.6 101 127-244 59-164 (382)
170 COG1092 Predicted SAM-dependen 98.4 2.8E-06 6.1E-11 82.7 11.0 114 125-241 217-338 (393)
171 KOG2187 tRNA uracil-5-methyltr 98.4 1.9E-06 4.2E-11 85.2 9.8 156 83-252 335-503 (534)
172 PRK00274 ksgA 16S ribosomal RN 98.3 1.1E-06 2.4E-11 81.6 7.5 72 125-203 42-114 (272)
173 PRK11933 yebU rRNA (cytosine-C 98.3 5.2E-06 1.1E-10 82.9 12.4 128 125-256 113-262 (470)
174 COG2265 TrmA SAM-dependent met 98.3 5.9E-06 1.3E-10 81.7 12.2 117 126-258 294-414 (432)
175 TIGR00755 ksgA dimethyladenosi 98.3 5.3E-06 1.1E-10 76.2 11.1 57 125-183 29-87 (253)
176 PRK14896 ksgA 16S ribosomal RN 98.3 2.2E-06 4.7E-11 79.1 8.5 70 125-203 29-100 (258)
177 COG0421 SpeE Spermidine syntha 98.3 8.6E-06 1.9E-10 76.2 12.1 112 126-245 77-196 (282)
178 PF05219 DREV: DREV methyltran 98.3 9.5E-06 2.1E-10 74.5 11.8 121 126-267 95-243 (265)
179 PF06080 DUF938: Protein of un 98.3 2.8E-06 6.1E-11 75.5 8.1 111 118-238 19-140 (204)
180 TIGR00478 tly hemolysin TlyA f 98.3 6.2E-06 1.4E-10 74.9 10.2 94 125-237 75-169 (228)
181 PF02527 GidB: rRNA small subu 98.2 1.9E-05 4E-10 69.5 12.4 94 128-239 51-148 (184)
182 PF10672 Methyltrans_SAM: S-ad 98.2 9.5E-06 2.1E-10 76.0 11.1 112 125-241 123-240 (286)
183 COG1041 Predicted DNA modifica 98.2 7.6E-06 1.6E-10 78.0 10.4 120 125-260 197-326 (347)
184 PF03602 Cons_hypoth95: Conser 98.2 1.3E-05 2.9E-10 70.4 10.0 108 125-242 42-156 (183)
185 PRK04148 hypothetical protein; 98.1 1.7E-05 3.6E-10 66.2 9.4 72 125-205 16-88 (134)
186 PTZ00338 dimethyladenosine tra 98.1 8.3E-06 1.8E-10 76.8 8.3 71 125-204 36-111 (294)
187 PF12147 Methyltransf_20: Puta 98.1 2.9E-05 6.2E-10 72.3 11.5 119 125-255 135-266 (311)
188 PF05185 PRMT5: PRMT5 arginine 98.1 1.2E-05 2.6E-10 79.9 9.4 99 126-236 187-294 (448)
189 PF05148 Methyltransf_8: Hypot 98.1 7.9E-06 1.7E-10 72.8 7.2 105 125-261 72-182 (219)
190 KOG3045 Predicted RNA methylas 98.1 3.3E-05 7.1E-10 70.8 11.0 103 124-260 179-287 (325)
191 PF05958 tRNA_U5-meth_tr: tRNA 98.1 2.9E-05 6.3E-10 74.9 11.2 117 127-260 198-329 (352)
192 COG3963 Phospholipid N-methylt 98.1 4.3E-05 9.4E-10 65.8 10.5 108 125-239 48-156 (194)
193 PF03141 Methyltransf_29: Puta 98.1 2.5E-06 5.3E-11 84.4 3.3 98 125-238 117-218 (506)
194 KOG1663 O-methyltransferase [S 98.1 5.3E-05 1.1E-09 68.3 11.5 101 126-237 74-181 (237)
195 KOG3420 Predicted RNA methylas 98.0 9E-06 1.9E-10 68.4 5.4 97 121-230 44-144 (185)
196 COG0144 Sun tRNA and rRNA cyto 98.0 0.00012 2.7E-09 70.6 13.9 113 125-239 156-288 (355)
197 PF10294 Methyltransf_16: Puta 98.0 4E-05 8.7E-10 66.5 9.4 105 125-239 45-156 (173)
198 TIGR00308 TRM1 tRNA(guanine-26 98.0 4.8E-05 1E-09 74.0 10.8 115 127-257 46-167 (374)
199 PF09445 Methyltransf_15: RNA 98.0 1.7E-05 3.6E-10 68.4 6.5 74 128-207 2-80 (163)
200 KOG1331 Predicted methyltransf 98.0 6.6E-06 1.4E-10 76.2 4.1 98 125-238 45-142 (293)
201 PF13578 Methyltransf_24: Meth 98.0 1.3E-05 2.7E-10 63.5 5.0 96 130-237 1-103 (106)
202 PF01728 FtsJ: FtsJ-like methy 97.9 3.1E-05 6.6E-10 67.2 6.9 107 125-239 23-139 (181)
203 KOG1500 Protein arginine N-met 97.9 8E-05 1.7E-09 70.5 9.8 96 125-236 177-279 (517)
204 KOG1661 Protein-L-isoaspartate 97.9 5.7E-05 1.2E-09 67.2 8.3 96 125-239 82-193 (237)
205 COG0500 SmtA SAM-dependent met 97.9 0.00026 5.6E-09 55.6 11.3 100 129-241 52-157 (257)
206 COG0742 N6-adenine-specific me 97.8 0.00037 8E-09 61.3 11.9 107 125-242 43-157 (187)
207 COG0030 KsgA Dimethyladenosine 97.8 6.7E-05 1.4E-09 69.2 7.5 71 126-203 31-104 (259)
208 COG0357 GidB Predicted S-adeno 97.7 0.00026 5.5E-09 63.7 10.4 115 126-258 68-189 (215)
209 PRK11783 rlmL 23S rRNA m(2)G24 97.7 0.00027 5.9E-09 74.1 12.3 117 126-248 191-356 (702)
210 TIGR02987 met_A_Alw26 type II 97.7 0.00015 3.2E-09 73.6 9.9 81 126-208 32-124 (524)
211 PRK00050 16S rRNA m(4)C1402 me 97.7 0.00013 2.8E-09 68.7 8.6 76 125-201 19-97 (296)
212 PF02384 N6_Mtase: N-6 DNA Met 97.7 8.5E-05 1.9E-09 69.9 7.0 126 125-255 46-204 (311)
213 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.7 0.00031 6.7E-09 65.8 10.3 112 125-239 85-219 (283)
214 PF05891 Methyltransf_PK: AdoM 97.7 0.00022 4.7E-09 64.0 8.5 102 125-238 55-160 (218)
215 KOG2940 Predicted methyltransf 97.6 6.8E-05 1.5E-09 67.7 5.0 100 125-238 72-173 (325)
216 COG2520 Predicted methyltransf 97.6 0.00032 6.9E-09 67.2 9.6 97 125-239 188-289 (341)
217 TIGR01444 fkbM_fam methyltrans 97.6 0.0002 4.2E-09 59.3 7.1 55 128-182 1-59 (143)
218 PRK10611 chemotaxis methyltran 97.6 0.00012 2.5E-09 68.8 6.2 102 127-238 117-261 (287)
219 PF01739 CheR: CheR methyltran 97.6 9.4E-05 2E-09 65.7 5.0 102 126-238 32-174 (196)
220 TIGR03439 methyl_EasF probable 97.5 0.00067 1.4E-08 64.7 10.4 108 125-241 76-199 (319)
221 COG0293 FtsJ 23S rRNA methylas 97.4 0.0023 5E-08 57.1 11.9 104 125-239 45-159 (205)
222 KOG1709 Guanidinoacetate methy 97.4 0.00047 1E-08 61.7 7.3 102 125-238 101-205 (271)
223 PF04816 DUF633: Family of unk 97.4 0.0025 5.4E-08 57.0 12.1 114 129-260 1-120 (205)
224 PRK00536 speE spermidine synth 97.4 0.0018 3.9E-08 60.1 11.3 108 124-254 71-190 (262)
225 PF08123 DOT1: Histone methyla 97.4 0.00036 7.9E-09 62.4 6.3 100 125-237 42-156 (205)
226 COG1352 CheR Methylase of chem 97.3 0.00086 1.9E-08 62.4 8.1 98 126-238 97-240 (268)
227 COG0116 Predicted N6-adenine-s 97.3 0.0029 6.2E-08 61.4 11.4 108 127-241 193-346 (381)
228 PF01269 Fibrillarin: Fibrilla 97.1 0.015 3.2E-07 52.6 13.8 124 125-260 73-208 (229)
229 COG4262 Predicted spermidine s 97.1 0.005 1.1E-07 59.2 10.9 126 125-258 289-430 (508)
230 PLN03034 phosphoglycerate kina 97.1 0.001 2.2E-08 66.1 6.5 102 9-113 370-479 (481)
231 KOG0820 Ribosomal RNA adenine 97.1 0.002 4.4E-08 59.6 7.5 70 125-203 58-132 (315)
232 PRK01747 mnmC bifunctional tRN 97.0 0.0043 9.2E-08 64.7 11.0 121 126-259 58-222 (662)
233 COG1189 Predicted rRNA methyla 97.0 0.003 6.6E-08 57.4 8.5 149 125-309 79-229 (245)
234 KOG4589 Cell division protein 97.0 0.01 2.2E-07 52.2 11.2 122 125-254 69-203 (232)
235 PF13679 Methyltransf_32: Meth 97.0 0.0013 2.9E-08 54.9 5.6 58 125-183 25-94 (141)
236 KOG1269 SAM-dependent methyltr 97.0 0.00097 2.1E-08 64.6 5.2 94 126-238 111-214 (364)
237 PF00398 RrnaAD: Ribosomal RNA 97.0 0.011 2.4E-07 54.6 11.9 92 125-231 30-123 (262)
238 PF10354 DUF2431: Domain of un 96.7 0.011 2.5E-07 51.0 9.4 126 132-258 3-146 (166)
239 COG1889 NOP1 Fibrillarin-like 96.7 0.046 1E-06 48.8 12.5 123 125-261 76-211 (231)
240 KOG1122 tRNA and rRNA cytosine 96.7 0.027 5.8E-07 55.2 12.0 112 125-239 241-371 (460)
241 KOG2730 Methylase [General fun 96.6 0.0033 7.2E-08 56.6 5.2 72 126-200 95-171 (263)
242 PRK11760 putative 23S rRNA C24 96.5 0.0093 2E-07 57.2 8.0 86 125-232 211-296 (357)
243 PLN02282 phosphoglycerate kina 96.4 0.0058 1.3E-07 59.8 6.1 97 10-108 296-399 (401)
244 KOG3178 Hydroxyindole-O-methyl 96.4 0.017 3.6E-07 55.3 8.7 96 126-238 178-274 (342)
245 KOG3987 Uncharacterized conser 96.1 0.0018 3.9E-08 57.8 0.6 89 125-238 112-206 (288)
246 PRK10742 putative methyltransf 96.0 0.068 1.5E-06 49.2 10.3 70 126-201 89-171 (250)
247 PTZ00005 phosphoglycerate kina 96.0 0.015 3.2E-07 57.3 6.4 96 10-108 312-415 (417)
248 COG2384 Predicted SAM-dependen 95.9 0.12 2.6E-06 46.6 11.3 118 126-260 17-139 (226)
249 PF05971 Methyltransf_10: Prot 95.8 0.015 3.2E-07 54.9 5.4 107 89-201 64-184 (299)
250 PF03059 NAS: Nicotianamine sy 95.7 0.072 1.6E-06 49.8 9.5 101 127-239 122-230 (276)
251 COG4076 Predicted RNA methylas 95.6 0.01 2.3E-07 52.3 3.2 93 126-236 33-132 (252)
252 PF04989 CmcI: Cephalosporin h 95.6 0.039 8.4E-07 49.4 6.8 103 126-238 33-146 (206)
253 TIGR00006 S-adenosyl-methyltra 95.5 0.075 1.6E-06 50.4 8.9 76 125-201 20-99 (305)
254 PF07942 N2227: N2227-like pro 95.5 0.044 9.6E-07 51.0 7.2 123 125-260 56-238 (270)
255 cd00318 Phosphoglycerate_kinas 95.5 0.032 6.8E-07 54.7 6.5 97 9-107 292-395 (397)
256 PF04672 Methyltransf_19: S-ad 95.4 0.12 2.5E-06 48.1 9.6 120 126-256 69-211 (267)
257 KOG1562 Spermidine synthase [A 95.3 0.26 5.7E-06 46.4 11.4 123 125-254 121-251 (337)
258 KOG2352 Predicted spermine/spe 95.3 0.12 2.5E-06 51.6 9.6 99 128-239 51-161 (482)
259 PRK00073 pgk phosphoglycerate 95.3 0.033 7.2E-07 54.4 5.8 94 10-107 288-387 (389)
260 PF03141 Methyltransf_29: Puta 95.2 0.049 1.1E-06 54.5 6.6 119 125-260 365-487 (506)
261 PRK13699 putative methylase; P 95.0 0.083 1.8E-06 47.9 7.3 81 173-259 2-91 (227)
262 PF06962 rRNA_methylase: Putat 94.9 0.25 5.5E-06 41.5 9.2 85 151-239 1-92 (140)
263 PF02254 TrkA_N: TrkA-N domain 94.8 0.43 9.4E-06 37.7 10.2 99 134-247 4-104 (116)
264 PF04445 SAM_MT: Putative SAM- 94.4 0.19 4.1E-06 45.9 8.0 70 126-201 76-158 (234)
265 PRK11524 putative methyltransf 94.4 0.17 3.7E-06 47.2 7.9 80 171-257 7-96 (284)
266 PF02005 TRM: N2,N2-dimethylgu 94.2 0.31 6.8E-06 47.6 9.6 114 127-257 51-174 (377)
267 COG1867 TRM1 N2,N2-dimethylgua 94.0 0.3 6.5E-06 47.3 8.8 102 126-244 53-160 (380)
268 PF07757 AdoMet_MTase: Predict 94.0 0.048 1E-06 43.8 2.9 40 116-157 49-88 (112)
269 COG1064 AdhP Zn-dependent alco 94.0 0.14 3.1E-06 49.1 6.6 91 126-238 167-258 (339)
270 PF09243 Rsm22: Mitochondrial 93.9 0.82 1.8E-05 42.6 11.4 122 126-258 34-162 (274)
271 cd08283 FDH_like_1 Glutathione 93.9 0.35 7.6E-06 46.8 9.3 113 125-239 184-306 (386)
272 PF00107 ADH_zinc_N: Zinc-bind 93.7 0.18 4E-06 40.5 6.0 86 135-239 1-89 (130)
273 COG3897 Predicted methyltransf 93.6 0.19 4.2E-06 44.7 6.2 102 125-244 79-184 (218)
274 PF12692 Methyltransf_17: S-ad 93.6 0.18 3.8E-06 42.9 5.6 102 126-236 29-131 (160)
275 PLN02668 indole-3-acetate carb 93.4 0.55 1.2E-05 46.0 9.6 112 126-239 64-237 (386)
276 PF07091 FmrO: Ribosomal RNA m 93.4 0.46 9.9E-06 43.8 8.5 69 126-201 106-178 (251)
277 cd00315 Cyt_C5_DNA_methylase C 93.3 0.78 1.7E-05 42.7 10.2 123 128-259 2-138 (275)
278 PF00162 PGK: Phosphoglycerate 93.3 0.15 3.3E-06 49.8 5.6 54 17-72 305-358 (384)
279 KOG1596 Fibrillarin and relate 93.0 0.39 8.5E-06 44.1 7.3 102 125-238 156-260 (317)
280 COG4798 Predicted methyltransf 92.9 0.43 9.3E-06 42.5 7.3 105 125-238 48-165 (238)
281 PF01795 Methyltransf_5: MraW 92.5 0.63 1.4E-05 44.2 8.4 77 125-201 20-100 (310)
282 KOG3201 Uncharacterized conser 92.1 0.11 2.3E-06 45.0 2.4 121 126-257 30-159 (201)
283 PF01234 NNMT_PNMT_TEMT: NNMT/ 91.9 0.22 4.7E-06 46.1 4.4 128 125-260 56-235 (256)
284 KOG2198 tRNA cytosine-5-methyl 91.9 1.7 3.6E-05 42.2 10.5 114 125-239 155-296 (375)
285 PF05430 Methyltransf_30: S-ad 91.3 0.41 8.8E-06 39.4 5.0 75 172-259 32-106 (124)
286 PF01861 DUF43: Protein of unk 91.2 8.7 0.00019 35.3 13.9 124 125-262 44-176 (243)
287 PF11968 DUF3321: Putative met 90.8 0.63 1.4E-05 42.0 6.0 109 127-262 53-179 (219)
288 PF05711 TylF: Macrocin-O-meth 90.4 0.97 2.1E-05 41.7 7.1 118 126-258 75-232 (248)
289 COG0286 HsdM Type I restrictio 90.4 1.4 3E-05 44.6 8.9 114 125-239 186-326 (489)
290 KOG2793 Putative N2,N2-dimethy 90.1 3.2 6.9E-05 38.3 10.2 105 126-244 87-204 (248)
291 PF00145 DNA_methylase: C-5 cy 89.8 1.6 3.4E-05 40.6 8.2 124 128-260 2-138 (335)
292 cd08254 hydroxyacyl_CoA_DH 6-h 89.4 2.7 5.8E-05 39.0 9.5 95 126-238 166-262 (338)
293 PF01555 N6_N4_Mtase: DNA meth 89.1 0.63 1.4E-05 40.7 4.7 46 118-166 185-230 (231)
294 KOG1501 Arginine N-methyltrans 89.1 0.84 1.8E-05 45.3 5.8 50 127-177 68-122 (636)
295 PF03492 Methyltransf_7: SAM d 88.3 3.6 7.7E-05 39.5 9.6 108 126-238 17-182 (334)
296 PRK11524 putative methyltransf 88.2 0.97 2.1E-05 42.2 5.5 46 118-166 202-247 (284)
297 COG0275 Predicted S-adenosylme 86.7 4.8 0.0001 38.2 9.1 75 125-199 23-101 (314)
298 KOG2352 Predicted spermine/spe 86.6 1.6 3.5E-05 43.7 6.2 120 126-254 296-433 (482)
299 PRK13962 bifunctional phosphog 86.5 1.4 3.1E-05 45.9 6.1 96 9-109 291-393 (645)
300 TIGR00675 dcm DNA-methyltransf 86.3 3.9 8.5E-05 38.8 8.6 122 129-259 1-135 (315)
301 PRK03659 glutathione-regulated 86.0 7.2 0.00016 40.4 11.0 96 134-244 406-503 (601)
302 COG1063 Tdh Threonine dehydrog 85.8 4.4 9.4E-05 39.0 8.7 97 126-239 169-269 (350)
303 PF05206 TRM13: Methyltransfer 85.6 1.3 2.9E-05 41.0 4.8 60 125-184 18-86 (259)
304 KOG1253 tRNA methyltransferase 84.7 0.93 2E-05 45.5 3.5 105 125-242 109-220 (525)
305 KOG2798 Putative trehalase [Ca 84.4 3.3 7.1E-05 39.6 6.8 32 125-158 150-181 (369)
306 PRK09880 L-idonate 5-dehydroge 83.4 6.4 0.00014 37.2 8.6 95 126-238 170-265 (343)
307 COG4121 Uncharacterized conser 83.4 4.8 0.0001 37.2 7.4 121 126-259 59-224 (252)
308 cd08230 glucose_DH Glucose deh 82.9 6.5 0.00014 37.3 8.5 93 125-238 172-268 (355)
309 COG4627 Uncharacterized protei 82.8 0.58 1.3E-05 40.2 1.0 44 189-242 42-89 (185)
310 cd05188 MDR Medium chain reduc 82.8 8.4 0.00018 34.0 8.7 98 125-239 134-232 (271)
311 COG3129 Predicted SAM-dependen 81.9 4.2 9.1E-05 37.3 6.2 191 60-263 16-231 (292)
312 PF03446 NAD_binding_2: NAD bi 81.7 6.4 0.00014 33.3 7.2 102 135-258 8-114 (163)
313 PRK10669 putative cation:proto 81.0 16 0.00034 37.4 11.0 106 134-258 423-530 (558)
314 COG5459 Predicted rRNA methyla 79.8 2.6 5.7E-05 40.8 4.4 104 125-238 113-224 (484)
315 PHA01634 hypothetical protein 79.5 4.1 8.9E-05 34.0 4.9 42 125-167 28-69 (156)
316 TIGR02822 adh_fam_2 zinc-bindi 78.8 16 0.00034 34.5 9.5 88 125-238 165-253 (329)
317 TIGR03451 mycoS_dep_FDH mycoth 78.7 13 0.00027 35.4 8.9 97 125-238 176-275 (358)
318 COG3510 CmcI Cephalosporin hyd 78.6 7 0.00015 34.9 6.4 105 125-238 69-179 (237)
319 PRK13699 putative methylase; P 78.4 4.7 0.0001 36.5 5.5 38 120-160 159-196 (227)
320 PF11899 DUF3419: Protein of u 78.3 4.5 9.7E-05 39.7 5.7 64 167-239 271-334 (380)
321 cd05278 FDH_like Formaldehyde 78.1 14 0.0003 34.4 8.9 95 126-238 168-266 (347)
322 KOG2651 rRNA adenine N-6-methy 77.3 3.8 8.3E-05 40.1 4.7 32 126-158 154-185 (476)
323 PRK09496 trkA potassium transp 77.2 25 0.00055 34.4 10.8 70 134-205 237-308 (453)
324 cd08281 liver_ADH_like1 Zinc-d 76.8 19 0.00042 34.4 9.6 96 126-238 192-289 (371)
325 PRK03562 glutathione-regulated 76.8 23 0.0005 36.9 10.8 99 127-242 401-501 (621)
326 PF02636 Methyltransf_28: Puta 76.6 2.6 5.7E-05 38.5 3.4 33 127-159 20-60 (252)
327 TIGR03201 dearomat_had 6-hydro 76.0 16 0.00034 34.6 8.7 46 125-171 166-212 (349)
328 cd08261 Zn_ADH7 Alcohol dehydr 75.5 18 0.00038 33.8 8.8 97 125-238 159-257 (337)
329 cd08232 idonate-5-DH L-idonate 73.8 19 0.0004 33.6 8.5 94 126-238 166-261 (339)
330 KOG1099 SAM-dependent methyltr 73.7 9.7 0.00021 35.0 6.1 121 126-254 42-182 (294)
331 COG0270 Dcm Site-specific DNA 73.2 35 0.00075 32.5 10.3 126 126-258 3-141 (328)
332 TIGR03366 HpnZ_proposed putati 72.8 23 0.0005 32.3 8.7 96 126-238 121-217 (280)
333 COG0126 Pgk 3-phosphoglycerate 72.3 8.7 0.00019 37.6 5.8 97 9-108 289-391 (395)
334 cd08234 threonine_DH_like L-th 72.3 32 0.0007 31.8 9.7 96 125-238 159-256 (334)
335 KOG0024 Sorbitol dehydrogenase 72.1 26 0.00056 33.8 8.8 98 125-238 169-272 (354)
336 PRK15001 SAM-dependent 23S rib 71.7 41 0.00089 33.0 10.5 106 128-254 47-157 (378)
337 TIGR02825 B4_12hDH leukotriene 71.2 37 0.00081 31.5 9.9 95 125-238 138-236 (325)
338 PRK10309 galactitol-1-phosphat 70.9 41 0.00088 31.6 10.2 96 126-238 161-259 (347)
339 PF06859 Bin3: Bicoid-interact 70.9 7.3 0.00016 31.4 4.2 26 219-244 24-50 (110)
340 PF11599 AviRa: RRNA methyltra 70.7 5.4 0.00012 36.2 3.7 37 126-162 52-90 (246)
341 KOG4058 Uncharacterized conser 70.6 6.2 0.00014 33.8 3.9 58 125-183 72-134 (199)
342 PRK09424 pntA NAD(P) transhydr 70.1 27 0.00058 35.6 9.1 104 125-238 164-284 (509)
343 COG4301 Uncharacterized conser 69.7 62 0.0013 30.2 10.3 110 126-243 79-197 (321)
344 cd08236 sugar_DH NAD(P)-depend 69.6 36 0.00078 31.7 9.4 95 126-238 160-257 (343)
345 PLN03154 putative allyl alcoho 69.4 39 0.00083 32.1 9.7 95 125-238 158-257 (348)
346 PRK10537 voltage-gated potassi 69.1 36 0.00078 33.5 9.5 104 134-258 246-351 (393)
347 PF11312 DUF3115: Protein of u 69.1 17 0.00037 34.6 7.0 109 126-238 87-241 (315)
348 PLN02827 Alcohol dehydrogenase 69.0 33 0.00072 33.0 9.2 97 125-238 193-294 (378)
349 cd08245 CAD Cinnamyl alcohol d 68.4 38 0.00082 31.3 9.3 94 125-239 162-256 (330)
350 PRK10206 putative oxidoreducta 68.0 27 0.00059 33.4 8.3 69 128-205 3-75 (344)
351 PRK09496 trkA potassium transp 68.0 44 0.00095 32.8 10.0 95 129-239 3-99 (453)
352 PLN02740 Alcohol dehydrogenase 67.5 40 0.00087 32.4 9.5 95 125-238 198-299 (381)
353 PF07279 DUF1442: Protein of u 67.0 86 0.0019 28.4 10.6 73 125-202 41-123 (218)
354 KOG1098 Putative SAM-dependent 66.9 5.4 0.00012 41.3 3.3 34 125-158 44-78 (780)
355 cd08285 NADP_ADH NADP(H)-depen 66.8 37 0.00079 31.9 8.9 96 126-237 167-264 (351)
356 TIGR02818 adh_III_F_hyde S-(hy 65.9 45 0.00098 31.8 9.4 97 125-238 185-286 (368)
357 PRK00299 sulfur transfer prote 65.4 12 0.00026 28.2 4.2 58 191-261 8-65 (81)
358 COG1565 Uncharacterized conser 65.2 15 0.00033 35.7 5.9 45 117-162 70-122 (370)
359 COG0677 WecC UDP-N-acetyl-D-ma 65.1 29 0.00063 34.3 7.7 115 135-254 16-144 (436)
360 cd08255 2-desacetyl-2-hydroxye 63.9 47 0.001 29.8 8.8 89 126-238 98-189 (277)
361 KOG0023 Alcohol dehydrogenase, 63.8 35 0.00076 32.9 7.8 95 126-238 182-278 (360)
362 cd08278 benzyl_alcohol_DH Benz 63.7 66 0.0014 30.6 10.1 97 126-238 187-284 (365)
363 cd08237 ribitol-5-phosphate_DH 63.6 39 0.00084 31.9 8.4 91 125-238 163-255 (341)
364 PRK11559 garR tartronate semia 63.5 60 0.0013 30.0 9.5 106 129-258 5-116 (296)
365 PRK07417 arogenate dehydrogena 63.4 37 0.0008 31.3 8.0 83 129-235 3-87 (279)
366 PF01555 N6_N4_Mtase: DNA meth 63.3 3.6 7.8E-05 35.8 1.2 27 219-245 36-62 (231)
367 cd05565 PTS_IIB_lactose PTS_II 61.7 33 0.00072 27.0 6.3 80 132-245 5-84 (99)
368 PRK11064 wecC UDP-N-acetyl-D-m 61.2 89 0.0019 30.8 10.7 122 128-255 5-136 (415)
369 PF02153 PDH: Prephenate dehyd 61.0 20 0.00043 32.9 5.7 79 139-239 1-79 (258)
370 PRK10458 DNA cytosine methylas 60.7 1.3E+02 0.0027 30.5 11.7 132 126-259 88-254 (467)
371 cd08295 double_bond_reductase_ 60.7 68 0.0015 29.9 9.5 95 125-238 151-250 (338)
372 cd05285 sorbitol_DH Sorbitol d 60.6 69 0.0015 29.9 9.5 95 126-238 163-264 (343)
373 KOG0822 Protein kinase inhibit 60.5 14 0.0003 37.8 4.8 97 126-237 368-476 (649)
374 PF05050 Methyltransf_21: Meth 60.0 18 0.00039 29.7 4.8 35 131-165 1-39 (167)
375 COG2084 MmsB 3-hydroxyisobutyr 60.0 27 0.00058 32.9 6.4 138 135-302 7-161 (286)
376 PRK09599 6-phosphogluconate de 59.2 98 0.0021 28.8 10.2 106 132-258 6-114 (301)
377 COG0673 MviM Predicted dehydro 59.1 88 0.0019 29.1 9.9 70 127-205 4-78 (342)
378 TIGR01692 HIBADH 3-hydroxyisob 58.7 73 0.0016 29.5 9.2 102 135-258 3-110 (288)
379 PRK08507 prephenate dehydrogen 58.2 43 0.00094 30.7 7.5 84 129-236 3-88 (275)
380 cd08294 leukotriene_B4_DH_like 57.8 98 0.0021 28.4 9.9 95 126-238 144-240 (329)
381 COG1748 LYS9 Saccharopine dehy 57.7 74 0.0016 31.4 9.2 57 127-183 2-59 (389)
382 cd05281 TDH Threonine dehydrog 57.1 73 0.0016 29.7 9.0 96 126-238 164-261 (341)
383 COG0287 TyrA Prephenate dehydr 57.0 64 0.0014 30.2 8.4 106 127-255 4-111 (279)
384 PRK12490 6-phosphogluconate de 56.5 1.1E+02 0.0025 28.4 10.1 105 135-258 7-114 (299)
385 PLN02702 L-idonate 5-dehydroge 56.5 81 0.0018 29.8 9.3 99 126-238 182-284 (364)
386 TIGR00692 tdh L-threonine 3-de 56.1 83 0.0018 29.3 9.2 96 126-238 162-260 (340)
387 COG0604 Qor NADPH:quinone redu 55.3 71 0.0015 30.4 8.6 96 126-239 143-241 (326)
388 KOG2671 Putative RNA methylase 55.0 28 0.00061 33.8 5.6 106 125-238 208-353 (421)
389 PRK07502 cyclohexadienyl dehyd 54.8 68 0.0015 29.9 8.3 90 127-237 7-98 (307)
390 cd08240 6_hydroxyhexanoate_dh_ 54.8 1E+02 0.0022 28.8 9.6 96 126-237 176-272 (350)
391 KOG4174 Uncharacterized conser 54.3 1.3E+02 0.0028 28.1 9.5 130 126-258 57-211 (282)
392 PRK05396 tdh L-threonine 3-deh 54.2 74 0.0016 29.6 8.5 97 126-238 164-262 (341)
393 cd05564 PTS_IIB_chitobiose_lic 54.1 54 0.0012 25.3 6.3 80 132-245 4-83 (96)
394 COG2813 RsmC 16S RNA G1207 met 53.1 41 0.0009 31.9 6.4 57 193-258 36-92 (300)
395 cd08293 PTGR2 Prostaglandin re 52.9 1.3E+02 0.0028 27.9 10.0 94 127-238 156-253 (345)
396 PRK15182 Vi polysaccharide bio 52.7 91 0.002 30.9 9.2 93 135-239 13-120 (425)
397 TIGR01202 bchC 2-desacetyl-2-h 51.9 73 0.0016 29.5 8.0 85 126-238 145-230 (308)
398 PRK09590 celB cellobiose phosp 51.0 1.2E+02 0.0027 23.9 8.2 82 132-245 6-87 (104)
399 PF03269 DUF268: Caenorhabditi 50.9 61 0.0013 28.2 6.5 21 219-239 91-111 (177)
400 PF14740 DUF4471: Domain of un 50.7 24 0.00052 33.3 4.5 71 173-258 202-283 (289)
401 cd08277 liver_alcohol_DH_like 50.5 1.2E+02 0.0026 28.7 9.5 96 126-238 185-285 (365)
402 COG0275 Predicted S-adenosylme 50.1 26 0.00057 33.3 4.6 31 219-250 224-254 (314)
403 PTZ00357 methyltransferase; Pr 49.7 67 0.0014 34.3 7.7 98 127-234 702-830 (1072)
404 KOG2811 Uncharacterized conser 49.2 33 0.00072 33.5 5.2 57 127-183 184-246 (420)
405 PRK11579 putative oxidoreducta 48.9 1.1E+02 0.0023 29.1 8.8 67 128-205 6-75 (346)
406 cd03420 SirA_RHOD_Pry_redox Si 48.8 31 0.00067 24.9 3.9 41 222-262 16-56 (69)
407 cd03422 YedF YedF is a bacteri 48.7 37 0.0008 24.5 4.3 41 222-262 16-56 (69)
408 cd08301 alcohol_DH_plants Plan 48.2 1.3E+02 0.0029 28.4 9.4 97 125-238 187-288 (369)
409 PF08468 MTS_N: Methyltransfer 47.9 26 0.00056 29.9 3.9 110 126-256 13-122 (155)
410 PRK05225 ketol-acid reductoiso 47.8 35 0.00076 34.4 5.3 91 125-239 35-131 (487)
411 TIGR00853 pts-lac PTS system, 47.3 88 0.0019 24.2 6.5 82 128-244 5-86 (95)
412 cd08300 alcohol_DH_class_III c 47.3 1.6E+02 0.0034 28.0 9.7 95 125-238 186-287 (368)
413 PRK13403 ketol-acid reductoiso 47.0 71 0.0015 30.8 7.0 89 126-239 16-106 (335)
414 cd00291 SirA_YedF_YeeD SirA, Y 46.6 34 0.00074 24.1 3.9 39 224-262 18-56 (69)
415 cd08279 Zn_ADH_class_III Class 46.0 1.7E+02 0.0038 27.5 9.8 97 126-238 183-281 (363)
416 TIGR00027 mthyl_TIGR00027 meth 45.7 1.9E+02 0.0041 26.6 9.6 107 126-239 82-197 (260)
417 KOG2912 Predicted DNA methylas 45.3 33 0.00071 33.1 4.4 54 129-182 106-164 (419)
418 KOG2360 Proliferation-associat 45.3 44 0.00095 32.9 5.4 60 124-183 212-276 (413)
419 cd05284 arabinose_DH_like D-ar 45.0 95 0.0021 28.7 7.7 96 126-238 168-265 (340)
420 TIGR00497 hsdM type I restrict 44.7 1.1E+02 0.0024 30.9 8.5 110 126-238 218-354 (501)
421 PF03721 UDPG_MGDP_dh_N: UDP-g 44.5 34 0.00074 29.8 4.2 62 194-256 76-139 (185)
422 PLN02819 lysine-ketoglutarate 44.1 1.6E+02 0.0035 32.9 10.0 77 126-205 569-659 (1042)
423 TIGR00872 gnd_rel 6-phosphoglu 44.0 1.5E+02 0.0033 27.6 8.8 107 130-258 4-113 (298)
424 PRK11018 hypothetical protein; 44.0 46 0.001 24.7 4.3 58 192-262 8-65 (78)
425 cd08241 QOR1 Quinone oxidoredu 43.9 1.8E+02 0.0038 26.1 9.1 96 125-238 139-237 (323)
426 PRK09489 rsmC 16S ribosomal RN 43.2 53 0.0011 31.6 5.7 109 126-256 20-129 (342)
427 TIGR02819 fdhA_non_GSH formald 43.0 1.8E+02 0.004 28.2 9.5 106 126-238 186-298 (393)
428 cd08233 butanediol_DH_like (2R 42.9 1.5E+02 0.0033 27.7 8.7 96 126-238 173-271 (351)
429 PF03686 UPF0146: Uncharacteri 42.3 1.3E+02 0.0028 24.9 7.0 88 126-239 14-102 (127)
430 KOG2920 Predicted methyltransf 42.3 20 0.00043 33.7 2.4 34 125-159 116-149 (282)
431 COG5379 BtaA S-adenosylmethion 42.2 59 0.0013 31.1 5.5 62 169-239 305-366 (414)
432 PLN02353 probable UDP-glucose 41.9 2.1E+02 0.0046 28.8 10.0 123 129-254 4-143 (473)
433 KOG2078 tRNA modification enzy 41.7 18 0.00038 36.1 2.1 59 125-185 249-313 (495)
434 PRK15057 UDP-glucose 6-dehydro 41.2 1.8E+02 0.0039 28.5 9.1 111 135-255 7-134 (388)
435 cd08263 Zn_ADH10 Alcohol dehyd 40.7 1.7E+02 0.0038 27.5 8.9 97 126-238 188-286 (367)
436 cd08239 THR_DH_like L-threonin 40.4 1.7E+02 0.0037 27.1 8.6 95 126-238 164-261 (339)
437 PF01206 TusA: Sulfurtransfera 40.4 23 0.00049 25.4 2.1 42 221-262 16-57 (70)
438 PF07101 DUF1363: Protein of u 39.9 10 0.00022 29.8 0.1 18 129-146 6-23 (124)
439 TIGR00006 S-adenosyl-methyltra 39.8 51 0.0011 31.4 4.9 35 219-254 220-255 (305)
440 KOG1209 1-Acyl dihydroxyaceton 39.8 1.3E+02 0.0028 27.6 7.1 77 125-201 6-88 (289)
441 PRK09422 ethanol-active dehydr 39.4 1.8E+02 0.0039 26.8 8.6 96 126-238 163-260 (338)
442 cd08238 sorbose_phosphate_red 39.1 1.9E+02 0.0041 28.0 9.0 95 126-237 176-286 (410)
443 KOG1227 Putative methyltransfe 39.0 11 0.00025 35.8 0.3 72 125-202 194-270 (351)
444 PF07991 IlvN: Acetohydroxy ac 38.8 66 0.0014 27.9 4.9 90 126-239 4-95 (165)
445 cd08286 FDH_like_ADH2 formalde 38.7 1.3E+02 0.0028 28.0 7.5 96 127-238 168-265 (345)
446 COG1255 Uncharacterized protei 38.4 1.9E+02 0.0041 23.8 7.2 67 126-205 14-81 (129)
447 TIGR02817 adh_fam_1 zinc-bindi 37.8 2.4E+02 0.0052 25.8 9.2 96 126-238 149-246 (336)
448 cd00218 GlcAT-I Beta1,3-glucur 37.5 67 0.0014 29.2 5.0 35 220-254 82-118 (223)
449 cd03423 SirA SirA (also known 37.3 55 0.0012 23.5 3.7 41 222-262 16-56 (69)
450 KOG1367 3-phosphoglycerate kin 37.3 64 0.0014 31.1 5.0 56 12-67 312-372 (416)
451 COG1023 Gnd Predicted 6-phosph 36.8 2.1E+02 0.0046 26.7 8.1 104 135-259 7-115 (300)
452 cd08243 quinone_oxidoreductase 36.7 2.8E+02 0.0061 24.9 9.3 93 126-238 143-237 (320)
453 PRK13302 putative L-aspartate 36.5 1.8E+02 0.0038 26.9 7.9 107 127-258 7-118 (271)
454 COG0059 IlvC Ketol-acid reduct 36.0 1.7E+02 0.0038 28.0 7.6 90 126-239 18-109 (338)
455 PLN02586 probable cinnamyl alc 35.8 1.9E+02 0.004 27.5 8.2 92 126-238 184-277 (360)
456 PF01408 GFO_IDH_MocA: Oxidore 35.0 2.1E+02 0.0045 22.0 9.8 106 129-258 3-115 (120)
457 TIGR03026 NDP-sugDHase nucleot 34.4 2.5E+02 0.0055 27.4 9.0 45 194-239 76-120 (411)
458 smart00859 Semialdhyde_dh Semi 34.2 1.3E+02 0.0027 23.7 5.8 25 131-155 4-30 (122)
459 KOG0821 Predicted ribosomal RN 33.6 77 0.0017 29.1 4.7 59 125-183 50-110 (326)
460 COG0425 SirA Predicted redox p 33.4 1.2E+02 0.0026 22.6 5.1 55 193-260 6-61 (78)
461 PF03514 GRAS: GRAS domain fam 33.3 4.6E+02 0.01 25.5 11.0 38 120-157 105-149 (374)
462 cd08265 Zn_ADH3 Alcohol dehydr 33.2 3.5E+02 0.0077 25.7 9.8 98 126-238 204-306 (384)
463 TIGR00561 pntA NAD(P) transhyd 33.0 1.5E+02 0.0033 30.3 7.3 45 125-170 163-208 (511)
464 KOG0564 5,10-methylenetetrahyd 32.8 78 0.0017 32.2 5.0 125 127-258 48-209 (590)
465 PF01795 Methyltransf_5: MraW 32.5 64 0.0014 30.8 4.3 86 219-307 221-310 (310)
466 COG1062 AdhC Zn-dependent alco 32.4 4.2E+02 0.009 25.9 9.6 95 125-238 185-284 (366)
467 TIGR00518 alaDH alanine dehydr 31.6 1.6E+02 0.0036 28.5 7.1 40 126-166 167-207 (370)
468 PF02558 ApbA: Ketopantoate re 31.4 84 0.0018 25.6 4.4 101 135-250 5-112 (151)
469 PRK15461 NADH-dependent gamma- 31.3 3.5E+02 0.0076 25.1 9.1 102 135-258 8-115 (296)
470 KOG2741 Dimeric dihydrodiol de 31.3 3.3E+02 0.0071 26.5 8.8 51 149-206 32-84 (351)
471 cd08297 CAD3 Cinnamyl alcohol 31.1 3.7E+02 0.008 24.7 9.3 96 126-238 166-264 (341)
472 COG1568 Predicted methyltransf 31.0 3.5E+02 0.0076 25.8 8.7 120 125-257 152-281 (354)
473 PLN02178 cinnamyl-alcohol dehy 31.0 2.3E+02 0.0049 27.3 8.0 92 126-238 179-272 (375)
474 PF02826 2-Hacid_dh_C: D-isome 30.8 2.1E+02 0.0045 24.4 6.9 88 125-237 35-125 (178)
475 TIGR01505 tartro_sem_red 2-hyd 30.8 3E+02 0.0065 25.2 8.5 102 135-258 6-113 (291)
476 PRK00050 16S rRNA m(4)C1402 me 30.8 57 0.0012 30.8 3.6 35 219-254 216-251 (296)
477 cd08291 ETR_like_1 2-enoyl thi 30.8 1.5E+02 0.0032 27.4 6.5 85 134-238 154-241 (324)
478 cd08231 MDR_TM0436_like Hypoth 29.8 2.6E+02 0.0055 26.2 8.0 96 126-238 178-279 (361)
479 PRK09260 3-hydroxybutyryl-CoA 28.7 2.3E+02 0.005 26.0 7.3 38 194-240 81-118 (288)
480 cd05279 Zn_ADH1 Liver alcohol 28.3 4E+02 0.0088 25.1 9.2 96 126-238 184-284 (365)
481 cd08260 Zn_ADH6 Alcohol dehydr 27.8 2.7E+02 0.0058 25.8 7.7 95 126-238 166-263 (345)
482 PRK07530 3-hydroxybutyryl-CoA 27.5 3.6E+02 0.0079 24.7 8.5 37 194-239 83-119 (292)
483 PTZ00142 6-phosphogluconate de 27.0 4.1E+02 0.0089 26.8 9.2 107 135-258 8-121 (470)
484 COG1052 LdhA Lactate dehydroge 26.4 1.6E+02 0.0034 28.2 5.8 86 126-236 146-233 (324)
485 KOG2782 Putative SAM dependent 26.0 68 0.0015 29.4 3.0 47 119-165 37-83 (303)
486 PRK07102 short chain dehydroge 25.9 3E+02 0.0065 23.9 7.4 55 128-183 3-63 (243)
487 PF01358 PARP_regulatory: Poly 25.9 50 0.0011 31.2 2.3 51 127-180 60-114 (294)
488 PRK09548 PTS system ascorbate- 25.7 3.6E+02 0.0079 28.2 8.6 54 128-201 508-561 (602)
489 PF06897 DUF1269: Protein of u 25.6 1.1E+02 0.0023 24.2 3.8 41 218-258 41-81 (102)
490 PRK07326 short chain dehydroge 25.2 2.2E+02 0.0047 24.6 6.2 57 126-183 6-66 (237)
491 cd00401 AdoHcyase S-adenosyl-L 25.1 3.4E+02 0.0074 26.9 8.1 87 125-239 201-289 (413)
492 cd03421 SirA_like_N SirA_like_ 24.7 1.1E+02 0.0023 21.6 3.4 32 228-259 21-52 (67)
493 PHA03108 poly(A) polymerase sm 24.6 81 0.0017 29.7 3.3 50 126-178 61-114 (300)
494 cd08282 PFDH_like Pseudomonas 24.5 4.2E+02 0.009 25.1 8.5 105 126-237 177-283 (375)
495 cd05283 CAD1 Cinnamyl alcohol 23.8 4.8E+02 0.01 24.1 8.7 91 127-238 171-262 (337)
496 PRK08293 3-hydroxybutyryl-CoA 23.7 4.9E+02 0.011 23.8 8.6 36 194-238 84-119 (287)
497 PRK08300 acetaldehyde dehydrog 23.6 2.7E+02 0.0058 26.5 6.7 71 127-203 5-79 (302)
498 PRK07067 sorbitol dehydrogenas 23.5 2.9E+02 0.0063 24.3 6.8 57 126-183 6-64 (257)
499 TIGR00873 gnd 6-phosphoglucona 23.1 7.3E+02 0.016 25.0 10.1 108 135-258 6-118 (467)
500 PRK00094 gpsA NAD(P)H-dependen 23.1 4.9E+02 0.011 23.9 8.6 88 129-238 4-104 (325)
No 1
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=100.00 E-value=7.7e-39 Score=283.36 Aligned_cols=184 Identities=26% Similarity=0.527 Sum_probs=148.9
Q ss_pred chhhHhhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEch----HHHHHHHHHHcCCCcEEEEEccccchhhhhhc
Q 021567 114 DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGITNGYFIATNATSTFRSIVA 189 (311)
Q Consensus 114 ~~~~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi----~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~ 189 (311)
.++|.+.|++ ..+++||||||.|.+++.+|+++|+.+++|||+ +..+.+++...+++|+.++++||..++..++
T Consensus 7 ~~~~~~~f~~-~~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~- 84 (195)
T PF02390_consen 7 PLDWQEIFGN-DNPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLF- 84 (195)
T ss_dssp TTCHHHHHTS-CCEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHS-
T ss_pred ccCHHHHcCC-CCCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcc-
Confidence 5789999998 578999999999999999999999999999997 3567777778899999999999999887766
Q ss_pred cCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhc-CCCceeeeccccc
Q 021567 190 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY-GKGKLVLVQDECD 268 (311)
Q Consensus 190 ~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~-g~~~~~~~~d~y~ 268 (311)
+++++|.|+++|||||||++|+|||++++.|++.++++|+|||.|+++||+.+|+++|++.+.+. +.+......+.+
T Consensus 85 -~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~~~~~~~~~- 162 (195)
T PF02390_consen 85 -PPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEESHPGFENIEESDDL- 162 (195)
T ss_dssp -TTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHHSTTEEEE-TESSG-
T ss_pred -cCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhcCcCeEEcccCccc-
Confidence 57999999999999999999999999999999999999999999999999999999999999994 544322111111
Q ss_pred cccCCCCCCCCCCCCCCCHHHHHHHHcCCCeEEEEEEeC
Q 021567 269 TKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKP 307 (311)
Q Consensus 269 ~~~~~~~~~~~~~~~~~T~yE~~~~~~G~~i~~~~~~k~ 307 (311)
+.. ...+..+.|+||++++++|++||+++|+|+
T Consensus 163 ---~~~---~~~~~~~~T~yE~k~~~~G~~i~~~~f~k~ 195 (195)
T PF02390_consen 163 ---HES---PFDDDYIPTKYERKWLAEGKPIYRLIFKKV 195 (195)
T ss_dssp ---GCS---CCCTTCCSSHHHHHHHHTTSS-EEEEEEE-
T ss_pred ---ccC---CCCCCCCCCHHHHHHHHCCCCCEEEEEEEC
Confidence 111 111258899999999999999999999985
No 2
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=100.00 E-value=1.8e-38 Score=286.25 Aligned_cols=186 Identities=26% Similarity=0.379 Sum_probs=160.3
Q ss_pred chhhHhhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEch----HHHHHHHHHHcCCCcEEEEEccccchhhhhhc
Q 021567 114 DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGITNGYFIATNATSTFRSIVA 189 (311)
Q Consensus 114 ~~~~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi----~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~ 189 (311)
..+|.+.|+++..+++||||||.|.+++.+|+++|+.+|+|||+ +..|++++.+.+++|+.+++.||..+++.++
T Consensus 37 ~~~~~~~f~~~~~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~- 115 (227)
T COG0220 37 PGDWSALFGNNNAPIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLI- 115 (227)
T ss_pred cchHHHHhCCCCCcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcC-
Confidence 46799999985568999999999999999999999999999996 5788899999999999999999999987655
Q ss_pred cCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceeeecccccc
Q 021567 190 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDT 269 (311)
Q Consensus 190 ~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~~~d~y~~ 269 (311)
+++++|.|+++|||||||++|+|||++++.|++.++++|+|||.|+++||++.|++++.....++..+....+.+.+
T Consensus 116 -~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~~~~~~~~~~~~~~~-- 192 (227)
T COG0220 116 -PDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVLEHPPFLKFESEDLH-- 192 (227)
T ss_pred -CCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHHhcchhhhccccccc--
Confidence 57799999999999999999999999999999999999999999999999999999966666666444433433321
Q ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHcCCCeEEEEEEeCC
Q 021567 270 KTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPS 308 (311)
Q Consensus 270 ~~~~~~~~~~~~~~~~T~yE~~~~~~G~~i~~~~~~k~~ 308 (311)
. +......++.|+||+++.++|++||++.+++..
T Consensus 193 ---~--~~~~~~~~~~T~yE~k~~~~g~~i~~l~~~~~~ 226 (227)
T COG0220 193 ---Y--NLPPPDNNPVTEYEQKFRRLGHPVYDLEFIKKK 226 (227)
T ss_pred ---c--ccccccCCCCcHHHHHHHhCCCceEEEEEEecC
Confidence 1 223344578999999999999999999999865
No 3
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=100.00 E-value=4.8e-33 Score=245.83 Aligned_cols=180 Identities=23% Similarity=0.400 Sum_probs=150.7
Q ss_pred chhhHhhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHH----HHHHHHcCCCcEEEEEccccchhhhhhc
Q 021567 114 DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLSGITNGYFIATNATSTFRSIVA 189 (311)
Q Consensus 114 ~~~~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a----~~~a~~~~~~Nv~f~~~Da~~ll~~~~~ 189 (311)
..+|.+.|++ ..+++||||||+|.++..+|+++|+.+++|+|++..+ .+++...+++|++++++|+.++....+
T Consensus 6 ~~~~~~~f~~-~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~- 83 (194)
T TIGR00091 6 KPDFATVFGN-KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFF- 83 (194)
T ss_pred CCCHHHHhCC-CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhC-
Confidence 4578888986 5789999999999999999999999999999986544 444555678899999999998754333
Q ss_pred cCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCC-ceeeeccccc
Q 021567 190 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG-KLVLVQDECD 268 (311)
Q Consensus 190 ~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~-~~~~~~d~y~ 268 (311)
+++++|.|+++|||||++++|+++|++.+.++++++++|||||.|++.||+..|++++++.+.+++.+ ......|
T Consensus 84 -~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~~~~~~~--- 159 (194)
T TIGR00091 84 -PDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFENTSKSTD--- 159 (194)
T ss_pred -CCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEecccccc---
Confidence 46799999999999999999999999999999999999999999999999999999999999998733 2221111
Q ss_pred cccCCCCCCCCCCC---CCCCHHHHHHHHcCCCeEEEEEEeC
Q 021567 269 TKTNQGGWLGENSF---GVRSDWEQHVIDRGAPMYRLMLSKP 307 (311)
Q Consensus 269 ~~~~~~~~~~~~~~---~~~T~yE~~~~~~G~~i~~~~~~k~ 307 (311)
....+. .+.|+||++++++|++||+++++|.
T Consensus 160 --------~~~~~~~~~~~~T~~E~~~~~~g~~i~~~~~~~~ 193 (194)
T TIGR00091 160 --------LNNSPLSRPRNMTEYEQRFERLGHPVFDLCFERL 193 (194)
T ss_pred --------cCCCcccccCcCCHHHHHHHHCCCCeEEEEEEEC
Confidence 122232 3469999999999999999999985
No 4
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.98 E-value=3.1e-31 Score=254.88 Aligned_cols=172 Identities=19% Similarity=0.295 Sum_probs=147.0
Q ss_pred HhhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchH----HHHHHHHHHcCCCcEEEEEccccchhhhhhccCCC
Q 021567 118 SAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV----THCRDSLQLSGITNGYFIATNATSTFRSIVASYPG 193 (311)
Q Consensus 118 ~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~----~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~ 193 (311)
.+.+....++++||||||+|.+++.+|+++|+.+++|+|++ +.+.+++..++++|+.++++|+..++. .+ +++
T Consensus 115 ~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~-~~--~~~ 191 (390)
T PRK14121 115 LDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLE-LL--PSN 191 (390)
T ss_pred HHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhh-hC--CCC
Confidence 34444446789999999999999999999999999999974 456667777789999999999988743 34 589
Q ss_pred cEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceeeeccccccccCC
Q 021567 194 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQ 273 (311)
Q Consensus 194 s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~~~d~y~~~~~~ 273 (311)
++|.|+++|||||+|++| ||++++.++++++|+|+|||.+.+.||+.+|+++|.+.+.+.+......
T Consensus 192 s~D~I~lnFPdPW~KkrH--RRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~~~----------- 258 (390)
T PRK14121 192 SVEKIFVHFPVPWDKKPH--RRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKIEI----------- 258 (390)
T ss_pred ceeEEEEeCCCCccccch--hhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCceeec-----------
Confidence 999999999999999988 7999999999999999999999999999999999999998876543211
Q ss_pred CCCCCCCCCCCCCHHHHHHHHcCCCeEEEEEEeCC
Q 021567 274 GGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPS 308 (311)
Q Consensus 274 ~~~~~~~~~~~~T~yE~~~~~~G~~i~~~~~~k~~ 308 (311)
...++..+.|+||++|+++|++||++++++..
T Consensus 259 ---~~~~~~~i~TkyE~r~~~~G~~Iy~l~~~~~~ 290 (390)
T PRK14121 259 ---KKNAQLEVSSKYEDRWKKQNKDIYDLRIYNLE 290 (390)
T ss_pred ---ccCCCCCCCCHHHHHHHHCCCCEEEEEEEeCC
Confidence 12345578999999999999999999999864
No 5
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.97 E-value=1.4e-30 Score=260.50 Aligned_cols=179 Identities=18% Similarity=0.272 Sum_probs=147.6
Q ss_pred cCCCch-hhhhhCC-CchhhHhhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEch----HHHHHHHHHHcCCCcE
Q 021567 100 MLPGVS-ALDRAFP-FDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGITNG 173 (311)
Q Consensus 100 ~~~~~~-~l~~~~~-~~~~~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi----~~~a~~~a~~~~~~Nv 173 (311)
++.++. .++..+| ..+++...|+. .++++||||||.|.++..+|+++|+.+|+|+|+ ..++++++.+.+++|+
T Consensus 321 ~~~~q~~~~e~~~p~~~i~~eklf~~-~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~ 399 (506)
T PRK01544 321 LSGVQQNLLDNELPKYLFSKEKLVNE-KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNF 399 (506)
T ss_pred CCHHHHHHHHhhhhhhCCCHHHhCCC-CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeE
Confidence 444553 3455555 34567777765 689999999999999999999999999999996 3567777777889999
Q ss_pred EEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHH
Q 021567 174 YFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFL 253 (311)
Q Consensus 174 ~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~ 253 (311)
.+++.|+..+ ...+ +++++|.|+++|||||||++|+|||++++.|++.++++|+|||.++++||+.+|+++|++.+.
T Consensus 400 ~~~~~~~~~~-~~~~--~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~ 476 (506)
T PRK01544 400 LLFPNNLDLI-LNDL--PNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQ 476 (506)
T ss_pred EEEcCCHHHH-HHhc--CcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHH
Confidence 9999998765 3445 589999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCceeeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 021567 254 EYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHV 292 (311)
Q Consensus 254 ~~g~~~~~~~~d~y~~~~~~~~~~~~~~~~~~T~yE~~~ 292 (311)
+++.+.. ... +.++...+..+.|+||+|.
T Consensus 477 ~~~~f~~-~~~---------~~~~~~~~~~~~T~yE~k~ 505 (506)
T PRK01544 477 QNGNFEI-INK---------NDYLKPHDNYVITKYHQKA 505 (506)
T ss_pred hCCCeEe-ccc---------ccccCCCCCCCCchhccCc
Confidence 9874432 111 2233345678899999975
No 6
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.93 E-value=9.1e-25 Score=194.30 Aligned_cols=169 Identities=21% Similarity=0.369 Sum_probs=143.0
Q ss_pred CchhhHhhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCcEEEEEccc-cchhhhh
Q 021567 113 FDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNA-TSTFRSI 187 (311)
Q Consensus 113 ~~~~~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~Nv~f~~~Da-~~ll~~~ 187 (311)
...+|...|.+ ++.+|||||||+|.++..+|+..|+.+++|+|+++.+++.+ +..+.+|+.++++|+ ..+ +..
T Consensus 29 ~~~~~~~~~~~-~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l-~~~ 106 (202)
T PRK00121 29 APLDWAELFGN-DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVL-LDM 106 (202)
T ss_pred CCCCHHHHcCC-CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHH-HHH
Confidence 46789999988 68899999999999999999999999999999876655554 345678999999999 544 322
Q ss_pred hccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceeeecccc
Q 021567 188 VASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDEC 267 (311)
Q Consensus 188 ~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~~~d~y 267 (311)
+ ++++||.|+++||+||.+..|++++...+.++++++++|||||.|++.+++..+..++.+.+++.|+... +
T Consensus 107 ~--~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~-~----- 178 (202)
T PRK00121 107 F--PDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLV-S----- 178 (202)
T ss_pred c--CccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccccc-c-----
Confidence 3 5789999999999999888888887777899999999999999999999999999999999999997532 2
Q ss_pred ccccCCCCCCCCCCCCCCCHHHHHHHHc
Q 021567 268 DTKTNQGGWLGENSFGVRSDWEQHVIDR 295 (311)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~T~yE~~~~~~ 295 (311)
.+.+|...++..+.|+||++|+.+
T Consensus 179 ----~~~~~~~~~~~~~~~~~~~~~~~~ 202 (202)
T PRK00121 179 ----EAGDYVPRPEGRPMTEYERKGLRK 202 (202)
T ss_pred ----cchhhcccCccCCCcHHHHHhhcC
Confidence 124577788999999999999753
No 7
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.79 E-value=5.2e-19 Score=160.47 Aligned_cols=137 Identities=15% Similarity=0.193 Sum_probs=106.9
Q ss_pred hhhhhhhhhhhhhhhhhhhccCCCchhhhhhCCCchhhHhhc----CCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEE
Q 021567 80 IFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAY----HDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGL 155 (311)
Q Consensus 80 ~~~~~~fe~~a~~wd~~~~r~~~~~~~l~~~~~~~~~~~~~f----~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGi 155 (311)
..+...|++.+..||.++.-++.+. ...|.+.. ...++.+|||+|||||.+++.+++..+..+++|+
T Consensus 11 ~~v~~vF~~ia~~YD~~n~~~S~g~---------~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~ 81 (238)
T COG2226 11 EKVQKVFDKVAKKYDLMNDLMSFGL---------HRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGL 81 (238)
T ss_pred HHHHHHHHhhHHHHHhhcccccCcc---------hHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEE
Confidence 4677889999999999998888876 12232221 1114789999999999999999999889999999
Q ss_pred chHHHHHHHH----HHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccC
Q 021567 156 ELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVH 231 (311)
Q Consensus 156 Di~~~a~~~a----~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkp 231 (311)
|++..+++.+ ...+..+++|+++||+++ |++|++||.|++.|.--++.+ .+..|+|++|||||
T Consensus 82 D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~L-----Pf~D~sFD~vt~~fglrnv~d--------~~~aL~E~~RVlKp 148 (238)
T COG2226 82 DISESMLEVAREKLKKKGVQNVEFVVGDAENL-----PFPDNSFDAVTISFGLRNVTD--------IDKALKEMYRVLKP 148 (238)
T ss_pred ECCHHHHHHHHHHhhccCccceEEEEechhhC-----CCCCCccCEEEeeehhhcCCC--------HHHHHHHHHHhhcC
Confidence 9876555544 445666799999999998 678999999998864222111 15899999999999
Q ss_pred CeEEEEE
Q 021567 232 DGKVFLQ 238 (311)
Q Consensus 232 GG~l~~~ 238 (311)
||++.+.
T Consensus 149 gG~~~vl 155 (238)
T COG2226 149 GGRLLVL 155 (238)
T ss_pred CeEEEEE
Confidence 9988763
No 8
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=99.79 E-value=2.3e-19 Score=156.49 Aligned_cols=184 Identities=21% Similarity=0.335 Sum_probs=144.9
Q ss_pred CchhhHhhcCCC-----CCCeEEEEeccccHHHHHHHhhCCCCeEEEEch----HHHHHHHHHH-------cCCCcEEEE
Q 021567 113 FDIDWSAAYHDP-----AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQL-------SGITNGYFI 176 (311)
Q Consensus 113 ~~~~~~~~f~~~-----~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi----~~~a~~~a~~-------~~~~Nv~f~ 176 (311)
...||+..|+.- ...-+.|||||-|.+++.|+..+|+..++|+|| ++...+++++ ....|+.++
T Consensus 43 ~~mDWS~~yp~f~~~~~~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vl 122 (249)
T KOG3115|consen 43 QEMDWSKYYPDFRRALNKKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVL 122 (249)
T ss_pred HhCcHHHhhhhhhhhccccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceee
Confidence 467899887541 236799999999999999999999999999996 3333333322 236899999
Q ss_pred EccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcC
Q 021567 177 ATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG 256 (311)
Q Consensus 177 ~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g 256 (311)
+.++..+++.+| ..+.++-+++.||||++|.+.|++|++...++.+++-+|++||.++..||+.+..+||.+.+++++
T Consensus 123 r~namk~lpn~f--~kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~elh~wm~~~~e~hp 200 (249)
T KOG3115|consen 123 RTNAMKFLPNFF--EKGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVKELHEWMVKHLEEHP 200 (249)
T ss_pred eccchhhccchh--hhcccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHHHHHHHHHHHHHhCc
Confidence 999999988877 588999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeccccccccCCCCCCCCCCC----CCCCHHHHHHHHcCCCeEEEEEEeCCC
Q 021567 257 KGKLVLVQDECDTKTNQGGWLGENSF----GVRSDWEQHVIDRGAPMYRLMLSKPSC 309 (311)
Q Consensus 257 ~~~~~~~~d~y~~~~~~~~~~~~~~~----~~~T~yE~~~~~~G~~i~~~~~~k~~~ 309 (311)
.+.....+ +....+. .-.|+--++..++|...|.-+++++.-
T Consensus 201 lfe~lt~e-----------e~~~d~~v~~~~~~teeg~kv~r~~g~~f~a~f~r~~~ 246 (249)
T KOG3115|consen 201 LFERLTEE-----------EEENDPCVELLSNATEEGKKVARNGGKKFVAVFRRIPN 246 (249)
T ss_pred Hhhhcchh-----------hhcCCcchhhhhhhhhhcccccccCCceeeeeeeeccC
Confidence 76542211 1111111 113444466677777778888887653
No 9
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.75 E-value=5.1e-18 Score=154.26 Aligned_cols=143 Identities=13% Similarity=0.176 Sum_probs=71.4
Q ss_pred cchhhhhhhhhhhhhhhhhhhccCCCchhhhhhCCCchhhHhhcCCCCCCeEEEEeccccHHHHHHHhh-CCCCeEEEEc
Q 021567 78 SSIFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLE 156 (311)
Q Consensus 78 ~s~~~~~~fe~~a~~wd~~~~r~~~~~~~l~~~~~~~~~~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~-~p~~~vvGiD 156 (311)
+...+..+|++++..||.++.-++.++ ++.|.. ...+.....++..|||+|||||.++..++++ .|+..++|+|
T Consensus 5 k~~~v~~~Fd~ia~~YD~~n~~ls~g~---~~~wr~--~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD 79 (233)
T PF01209_consen 5 KEQYVRKMFDRIAPRYDRMNDLLSFGQ---DRRWRR--KLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVD 79 (233)
T ss_dssp -----------------------------------S--HHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCccccCCcH---HHHHHH--HHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEec
Confidence 445688899999999999998888776 222222 1112222224679999999999999999987 4678999999
Q ss_pred hHHHHHHHHH----HcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCC
Q 021567 157 LVTHCRDSLQ----LSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD 232 (311)
Q Consensus 157 i~~~a~~~a~----~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpG 232 (311)
+++.+++.++ ..+..|++++++|++++ |+++++||.|++.|--..+.+ ..+.++|++|+||||
T Consensus 80 ~s~~ML~~a~~k~~~~~~~~i~~v~~da~~l-----p~~d~sfD~v~~~fglrn~~d--------~~~~l~E~~RVLkPG 146 (233)
T PF01209_consen 80 ISPGMLEVARKKLKREGLQNIEFVQGDAEDL-----PFPDNSFDAVTCSFGLRNFPD--------RERALREMYRVLKPG 146 (233)
T ss_dssp S-HHHHHHHHHHHHHTT--SEEEEE-BTTB-------S-TT-EEEEEEES-GGG-SS--------HHHHHHHHHHHEEEE
T ss_pred CCHHHHHHHHHHHHhhCCCCeeEEEcCHHHh-----cCCCCceeEEEHHhhHHhhCC--------HHHHHHHHHHHcCCC
Confidence 8776665554 45667999999999998 667999999998874211111 147899999999999
Q ss_pred eEEEEE
Q 021567 233 GKVFLQ 238 (311)
Q Consensus 233 G~l~~~ 238 (311)
|++.+.
T Consensus 147 G~l~il 152 (233)
T PF01209_consen 147 GRLVIL 152 (233)
T ss_dssp EEEEEE
T ss_pred eEEEEe
Confidence 998874
No 10
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.69 E-value=4e-16 Score=144.05 Aligned_cols=161 Identities=15% Similarity=0.149 Sum_probs=111.2
Q ss_pred eeEEEcchhhHHHHH----hhccchhhhhhhhhhhhhhhhhhhccCCCchhhhhhCCCchhhHhhcCCCCCCeEEEEecc
Q 021567 60 CNVTVIGSMACKAIA----KVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSG 135 (311)
Q Consensus 60 ~~~~~~g~~~~~~~~----~~~~s~~~~~~fe~~a~~wd~~~~r~~~~~~~l~~~~~~~~~~~~~f~~~~~~~vLDIGcG 135 (311)
.-+||-|..|..--. .++=...+.++|++.+..||.++..++.+....-+. ....+. ...++.+|||||||
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~A~~YD~~~~~~s~g~~~~~r~--~~~~~~---~~~~~~~VLDlGcG 83 (261)
T PLN02233 9 SPVTFTGKLAGNSRSRRRDVVKCANERQALFNRIAPVYDNLNDLLSLGQHRIWKR--MAVSWS---GAKMGDRVLDLCCG 83 (261)
T ss_pred ccceeeccccccchhhcCChhhhHHHHHHHHHHhhhHHHHhhhhhcCChhHHHHH--HHHHHh---CCCCCCEEEEECCc
Confidence 345666665442211 111123577799999999999887666654211110 001111 11246789999999
Q ss_pred ccHHHHHHHhhC-CCCeEEEEchHHHHHHHHHHc-------CCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCC
Q 021567 136 NGLFLLGMARKR-KDLNFLGLELVTHCRDSLQLS-------GITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDF 207 (311)
Q Consensus 136 tG~~~~~lA~~~-p~~~vvGiDi~~~a~~~a~~~-------~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~ 207 (311)
||.++..++++. |+.+++|+|+++.+++.++++ ..+|+.++++|++++ |+++++||.|++.+.-.+.
T Consensus 84 tG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-----p~~~~sfD~V~~~~~l~~~ 158 (261)
T PLN02233 84 SGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-----PFDDCYFDAITMGYGLRNV 158 (261)
T ss_pred CCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-----CCCCCCEeEEEEecccccC
Confidence 999999999874 678999999988887776532 245899999999887 5578899999887643332
Q ss_pred CCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 208 NRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 208 k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.++ ..++++++|+|||||.+.+.
T Consensus 159 ~d~--------~~~l~ei~rvLkpGG~l~i~ 181 (261)
T PLN02233 159 VDR--------LKAMQEMYRVLKPGSRVSIL 181 (261)
T ss_pred CCH--------HHHHHHHHHHcCcCcEEEEE
Confidence 211 48999999999999999885
No 11
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.63 E-value=1.1e-14 Score=131.25 Aligned_cols=143 Identities=11% Similarity=0.082 Sum_probs=103.4
Q ss_pred cchhhhhhhhhhhhhhhhhhhccCCCch-hhhhhCCCchhhHhhcCCCCCCeEEEEeccccHHHHHHHhhC-CCCeEEEE
Q 021567 78 SSIFGLNMVESGSAVWEFLKGRMLPGVS-ALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKR-KDLNFLGL 155 (311)
Q Consensus 78 ~s~~~~~~fe~~a~~wd~~~~r~~~~~~-~l~~~~~~~~~~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~-p~~~vvGi 155 (311)
++..+.++|++++..||.+++.++.+.. ...+. .+ ......++.+|||||||+|.++..+++.. |..+++|+
T Consensus 3 ~~~~~~~~f~~~a~~yd~~~~~~~~~~~~~~~~~---~l---~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gv 76 (231)
T TIGR02752 3 KEERVHKVFEKIYKKYDRMNSVISFQRHKKWRKD---TM---KRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGL 76 (231)
T ss_pred hHHHHHHHHHHhhhHHhHHHHHhcCCchHHHHHH---HH---HhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEE
Confidence 4557788999999999999876655441 11100 01 11111246799999999999999999885 67899999
Q ss_pred chHHHHHHHHH----HcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccC
Q 021567 156 ELVTHCRDSLQ----LSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVH 231 (311)
Q Consensus 156 Di~~~a~~~a~----~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkp 231 (311)
|+++.+++.++ ..+.+++.++++|+.++ +.+++++|.|++.+.-.+..+ ...+++++.++|+|
T Consensus 77 D~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~V~~~~~l~~~~~--------~~~~l~~~~~~Lk~ 143 (231)
T TIGR02752 77 DFSENMLSVGRQKVKDAGLHNVELVHGNAMEL-----PFDDNSFDYVTIGFGLRNVPD--------YMQVLREMYRVVKP 143 (231)
T ss_pred ECCHHHHHHHHHHHHhcCCCceEEEEechhcC-----CCCCCCccEEEEecccccCCC--------HHHHHHHHHHHcCc
Confidence 98766555443 34567899999999875 335789999998765433221 14789999999999
Q ss_pred CeEEEEEe
Q 021567 232 DGKVFLQS 239 (311)
Q Consensus 232 GG~l~~~t 239 (311)
||.+++..
T Consensus 144 gG~l~~~~ 151 (231)
T TIGR02752 144 GGKVVCLE 151 (231)
T ss_pred CeEEEEEE
Confidence 99998864
No 12
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.61 E-value=5.8e-15 Score=133.32 Aligned_cols=132 Identities=14% Similarity=0.183 Sum_probs=103.6
Q ss_pred hhhhhhhhhhhhhhhhhhhccCCCchhhhhhCCCchhhHhhc----CCCCCCeEEEEeccccHHHHHHHhhCCC------
Q 021567 80 IFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAY----HDPAQPLVVDIGSGNGLFLLGMARKRKD------ 149 (311)
Q Consensus 80 ~~~~~~fe~~a~~wd~~~~r~~~~~~~l~~~~~~~~~~~~~f----~~~~~~~vLDIGcGtG~~~~~lA~~~p~------ 149 (311)
..++..|++.+..||.|+.-++.+.+ +. |.+.| ....+..+||++||||.+++.+.+..+.
T Consensus 60 ~~V~~vF~~vA~~YD~mND~mSlGiH---Rl------WKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~ 130 (296)
T KOG1540|consen 60 RLVHHVFESVAKKYDIMNDAMSLGIH---RL------WKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRE 130 (296)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhcchh---HH------HHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCC
Confidence 46788999999999999999988872 11 22222 2224689999999999999999987665
Q ss_pred CeEEEEchHHHHHH----HHHHcCC-C--cEEEEEccccchhhhhhccCCCcEeEEEEeC-----CCCCCCCchhhhhhh
Q 021567 150 LNFLGLELVTHCRD----SLQLSGI-T--NGYFIATNATSTFRSIVASYPGKLILVSIQC-----PNPDFNRPEHRWRMV 217 (311)
Q Consensus 150 ~~vvGiDi~~~a~~----~a~~~~~-~--Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f-----pdP~~k~~h~krRl~ 217 (311)
.+|+++|++..++. ++++.++ + .+.++++||+++ |+++.++|.+++.| ++|
T Consensus 131 ~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L-----pFdd~s~D~yTiafGIRN~th~------------ 193 (296)
T KOG1540|consen 131 SKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL-----PFDDDSFDAYTIAFGIRNVTHI------------ 193 (296)
T ss_pred ceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC-----CCCCCcceeEEEecceecCCCH------------
Confidence 89999998765554 4444444 2 399999999998 66899999999876 333
Q ss_pred HHHHHHHHHhcccCCeEEEEE
Q 021567 218 QRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 218 ~~~~l~~i~rvLkpGG~l~~~ 238 (311)
++.+++++|+|||||+|.+-
T Consensus 194 -~k~l~EAYRVLKpGGrf~cL 213 (296)
T KOG1540|consen 194 -QKALREAYRVLKPGGRFSCL 213 (296)
T ss_pred -HHHHHHHHHhcCCCcEEEEE
Confidence 48899999999999999863
No 13
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.56 E-value=1.4e-14 Score=110.99 Aligned_cols=94 Identities=14% Similarity=0.205 Sum_probs=74.9
Q ss_pred EEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcC-CCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCC
Q 021567 130 VDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG-ITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFN 208 (311)
Q Consensus 130 LDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~-~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k 208 (311)
||||||+|..+..++++ +..+++|+|+++.+++.+++.. ..++.+.++|+.++ |+++++||.|+....-.|..
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l-----~~~~~sfD~v~~~~~~~~~~ 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDL-----PFPDNSFDVVFSNSVLHHLE 74 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSS-----SS-TT-EEEEEEESHGGGSS
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhC-----ccccccccccccccceeecc
Confidence 89999999999999998 8899999999999888887654 34688999999887 55799999999875433321
Q ss_pred CchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 209 RPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 209 ~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
....+++++.|+|||||.++|
T Consensus 75 --------~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 --------DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp --------HHHHHHHHHHHHEEEEEEEEE
T ss_pred --------CHHHHHHHHHHHcCcCeEEeC
Confidence 125899999999999999986
No 14
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.55 E-value=3.2e-14 Score=113.37 Aligned_cols=104 Identities=17% Similarity=0.234 Sum_probs=77.2
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH----cC-CCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SG-ITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~----~~-~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
+.+|||||||+|.++..+++++|+.+++|+|+++.+++.+++ .+ .+|++++++|+ ... ......+|.|++
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~----~~~~~~~D~v~~ 76 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFD----PDFLEPFDLVIC 76 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGG----TTTSSCEEEEEE
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccC----cccCCCCCEEEE
Confidence 578999999999999999998899999999987665555432 23 47999999999 321 113566999998
Q ss_pred eC-CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 201 QC-PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 201 ~f-pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
.. .-.+. .+. -...++++.+++.|+|||++++.+
T Consensus 77 ~~~~~~~~--~~~---~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 77 SGFTLHFL--LPL---DERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp CSGSGGGC--CHH---HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccccc--cch---hHHHHHHHHHHHhcCCCcEEEEEE
Confidence 75 21110 011 122588999999999999999864
No 15
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.52 E-value=2.5e-13 Score=124.66 Aligned_cols=98 Identities=14% Similarity=0.015 Sum_probs=82.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
++.+|||||||+|.++..++++.|+.+++|+|+++.+++.+++. ++.++++|+.++ + ++++||.|++++.-
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~---~~~~~~~d~~~~-----~-~~~~fD~v~~~~~l 99 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER---GVDARTGDVRDW-----K-PKPDTDVVVSNAAL 99 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc---CCcEEEcChhhC-----C-CCCCceEEEEehhh
Confidence 46789999999999999999999999999999999999888654 688999998765 2 36789999998765
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
.|..+. ..++++++++|||||.+.+..
T Consensus 100 ~~~~d~--------~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 100 QWVPEH--------ADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred hhCCCH--------HHHHHHHHHhCCCCcEEEEEc
Confidence 554321 478999999999999999864
No 16
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.51 E-value=9.9e-14 Score=126.97 Aligned_cols=134 Identities=14% Similarity=0.153 Sum_probs=93.8
Q ss_pred hhhhhhhhhhccCCCchhhhhhCCCchhhHhhcCCCCCCeEEEEeccccHHHHHHHhh--CCCCeEEEEchHHHHHHHHH
Q 021567 89 GSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARK--RKDLNFLGLELVTHCRDSLQ 166 (311)
Q Consensus 89 ~a~~wd~~~~r~~~~~~~l~~~~~~~~~~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~--~p~~~vvGiDi~~~a~~~a~ 166 (311)
.+..||.+..+..|++..+.... ..+...+.. ++.+|||||||+|..+..+++. .|+.+++|+|+++.+++.++
T Consensus 24 ~a~~yd~~~~~~~p~y~~~~~~~---~~~~~~~~~-~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~ 99 (247)
T PRK15451 24 VAEVFPDMIQRSVPGYSNIISMI---GMLAERFVQ-PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCR 99 (247)
T ss_pred HHHhhhhHHHhcCCChHHHHHHH---HHHHHHhCC-CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHH
Confidence 46678888888888875444331 122222222 4678999999999999999884 68899999998877666654
Q ss_pred H----cCC-CcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 167 L----SGI-TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 167 ~----~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+ .+. .++.++++|+.++ + ...+|.|++++.-.+... . -...++++++++|||||.|++..
T Consensus 100 ~~~~~~~~~~~v~~~~~d~~~~-----~--~~~~D~vv~~~~l~~l~~-~-----~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 100 RHIDAYKAPTPVDVIEGDIRDI-----A--IENASMVVLNFTLQFLEP-S-----ERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred HHHHhcCCCCCeEEEeCChhhC-----C--CCCCCEEehhhHHHhCCH-H-----HHHHHHHHHHHhcCCCCEEEEEE
Confidence 3 343 3799999998876 2 234677776644222111 0 12488999999999999999853
No 17
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.51 E-value=2e-13 Score=120.25 Aligned_cols=115 Identities=19% Similarity=0.183 Sum_probs=90.3
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHH----HHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a----~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
+.+|||||||+|.+++.+|++.|+.+++|+|.++.+ .++++..+++|++++++|+.++ +. ++++|.|+++
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~-----~~-~~~fDlV~~~ 119 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEF-----GQ-EEKFDVVTSR 119 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhC-----CC-CCCccEEEEc
Confidence 678999999999999999998899999999987544 4555566788899999999875 32 6789999986
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCc
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK 259 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~ 259 (311)
.-.+ -+.++++++++|+|||.+++.. ...+...+.+..+..|+..
T Consensus 120 ~~~~------------~~~~l~~~~~~LkpGG~lv~~~-~~~~~~~l~~~~~~~~~~~ 164 (187)
T PRK00107 120 AVAS------------LSDLVELCLPLLKPGGRFLALK-GRDPEEEIAELPKALGGKV 164 (187)
T ss_pred cccC------------HHHHHHHHHHhcCCCeEEEEEe-CCChHHHHHHHHHhcCceE
Confidence 3211 1589999999999999999864 4455556666667777753
No 18
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.51 E-value=2.1e-13 Score=115.38 Aligned_cols=105 Identities=15% Similarity=0.271 Sum_probs=80.8
Q ss_pred CCCeEEEEeccccHHHHHHH-hhCCCCeEEEEchHHHHHHHHH----HcCCCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMA-RKRKDLNFLGLELVTHCRDSLQ----LSGITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA-~~~p~~~vvGiDi~~~a~~~a~----~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||+|||+|.++..++ +.+|+.+++|+|+++.+++.++ +.+.+|++|.++|+.++ +..+ ++.||.|+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l-~~~~---~~~~D~I~ 78 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDL-PQEL---EEKFDIII 78 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCG-CGCS---STTEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhcc-cccc---CCCeeEEE
Confidence 46789999999999999999 5588999999998776666554 46788999999999995 3212 27999999
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 241 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~ 241 (311)
...+-.+... ...+++++.+.|++||.+++..-.
T Consensus 79 ~~~~l~~~~~--------~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 79 SNGVLHHFPD--------PEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EESTGGGTSH--------HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EcCchhhccC--------HHHHHHHHHHHcCCCcEEEEEECC
Confidence 8844322111 147899999999999999986533
No 19
>PRK05785 hypothetical protein; Provisional
Probab=99.51 E-value=2.6e-13 Score=122.80 Aligned_cols=135 Identities=5% Similarity=-0.032 Sum_probs=95.8
Q ss_pred hhhhhhhhhhhhhhhhhhccCCCch-hhhhhCCCchhhHhhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHH
Q 021567 81 FGLNMVESGSAVWEFLKGRMLPGVS-ALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT 159 (311)
Q Consensus 81 ~~~~~fe~~a~~wd~~~~r~~~~~~-~l~~~~~~~~~~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~ 159 (311)
.+.++|++.+..||.++.-++.+.. ...+. .+........ .+.+|||||||||.++..+++.. +.+++|+|+++
T Consensus 10 ~v~~~f~~iA~~YD~~n~~~s~g~~~~wr~~---~~~~l~~~~~-~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~ 84 (226)
T PRK05785 10 ELQEAYNKIPKAYDRANRFISFNQDVRWRAE---LVKTILKYCG-RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAE 84 (226)
T ss_pred HHHHHHHhhhHHHHHhhhhccCCCcHHHHHH---HHHHHHHhcC-CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCH
Confidence 4667899999999999876655541 11100 1111111112 35789999999999999999886 57999999999
Q ss_pred HHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCe-EEEE
Q 021567 160 HCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDG-KVFL 237 (311)
Q Consensus 160 ~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG-~l~~ 237 (311)
.+++.++.. ..++++|++++ |+++++||.|++.|.-.+..+ .+..+++++|+|||.+ .+.+
T Consensus 85 ~Ml~~a~~~----~~~~~~d~~~l-----p~~d~sfD~v~~~~~l~~~~d--------~~~~l~e~~RvLkp~~~ile~ 146 (226)
T PRK05785 85 NMLKMNLVA----DDKVVGSFEAL-----PFRDKSFDVVMSSFALHASDN--------IEKVIAEFTRVSRKQVGFIAM 146 (226)
T ss_pred HHHHHHHhc----cceEEechhhC-----CCCCCCEEEEEecChhhccCC--------HHHHHHHHHHHhcCceEEEEe
Confidence 999887654 24678998876 557899999998875332211 1589999999999953 4444
No 20
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.48 E-value=2.9e-13 Score=123.65 Aligned_cols=133 Identities=13% Similarity=0.051 Sum_probs=94.1
Q ss_pred hhhhhhhhhhhhhhhhhhccCCCchhhhhhCCCchhhHhhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHH
Q 021567 81 FGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH 160 (311)
Q Consensus 81 ~~~~~fe~~a~~wd~~~~r~~~~~~~l~~~~~~~~~~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~ 160 (311)
.+...|++.+..||..........+.+ .+........+|||||||+|.++..+++. ..+++|+|+++.
T Consensus 8 ~i~~~F~~aa~~Y~~~~~~q~~~a~~l----------~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~ 75 (251)
T PRK10258 8 AIAAAFGRAAAHYEQHAELQRQSADAL----------LAMLPQRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPP 75 (251)
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHH----------HHhcCccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHH
Confidence 455567777777775432111111111 12222213568999999999999999875 579999999999
Q ss_pred HHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 161 CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 161 a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+++.++++. ....++++|++.+ ++++++||.|+.+++-.|..+. ..++.++.++|+|||.+++.+
T Consensus 76 ~l~~a~~~~-~~~~~~~~d~~~~-----~~~~~~fD~V~s~~~l~~~~d~--------~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 76 MLAQARQKD-AADHYLAGDIESL-----PLATATFDLAWSNLAVQWCGNL--------STALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred HHHHHHhhC-CCCCEEEcCcccC-----cCCCCcEEEEEECchhhhcCCH--------HHHHHHHHHHcCCCeEEEEEe
Confidence 988886553 3467899999876 4467899999988765553321 488999999999999999976
No 21
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.47 E-value=1e-12 Score=120.42 Aligned_cols=100 Identities=17% Similarity=0.172 Sum_probs=84.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
++.+|||||||+|.++..+++++|+.+++|+|+++.+++.++++ .+|+.++.+|+..+ . ++.++|.|+.++.-
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~-~~~~~~~~~d~~~~----~--~~~~fD~v~~~~~l 103 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSR-LPDCQFVEADIASW----Q--PPQALDLIFANASL 103 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHh-CCCCeEEECchhcc----C--CCCCccEEEEccCh
Confidence 46789999999999999999999999999999999988887654 56899999998765 1 35689999988776
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
.|.++. ..++++++++|+|||.+.+.+
T Consensus 104 ~~~~d~--------~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 104 QWLPDH--------LELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred hhCCCH--------HHHHHHHHHhcCCCcEEEEEC
Confidence 664331 478999999999999999975
No 22
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.47 E-value=9.6e-13 Score=119.55 Aligned_cols=134 Identities=13% Similarity=0.154 Sum_probs=93.5
Q ss_pred hhhhhhhhhhhccCCCchhhhhhCCCchhhHhhcCCCCCCeEEEEeccccHHHHHHHhh--CCCCeEEEEchHHHHHHHH
Q 021567 88 SGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARK--RKDLNFLGLELVTHCRDSL 165 (311)
Q Consensus 88 ~~a~~wd~~~~r~~~~~~~l~~~~~~~~~~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~--~p~~~vvGiDi~~~a~~~a 165 (311)
..+..|+.+..+..|+...+... ...+.+.+.. ++.+|||||||+|.++..++++ +|+.+++|+|+++.+++.+
T Consensus 20 ~~a~~y~~~~~~~~p~y~~~~~~---~~~l~~~~~~-~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a 95 (239)
T TIGR00740 20 NVAEVFPDMIQRSVPGYSNIITA---IGMLAERFVT-PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERC 95 (239)
T ss_pred HHHHhCcchhhccCCCHHHHHHH---HHHHHHHhCC-CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHH
Confidence 35677777766666766433322 1223333333 4678999999999999999987 4789999999987776666
Q ss_pred HH----cC-CCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 166 QL----SG-ITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 166 ~~----~~-~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
++ .+ ..++.++++|+.++ + ...+|.|++++.-++..... ...++++++++|+|||.+++.
T Consensus 96 ~~~~~~~~~~~~v~~~~~d~~~~-----~--~~~~d~v~~~~~l~~~~~~~------~~~~l~~i~~~LkpgG~l~i~ 160 (239)
T TIGR00740 96 RQHIAAYHSEIPVEILCNDIRHV-----E--IKNASMVILNFTLQFLPPED------RIALLTKIYEGLNPNGVLVLS 160 (239)
T ss_pred HHHHHhcCCCCCeEEEECChhhC-----C--CCCCCEEeeecchhhCCHHH------HHHHHHHHHHhcCCCeEEEEe
Confidence 43 23 24799999999876 2 12467787776655432111 148999999999999999986
No 23
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.45 E-value=5.6e-13 Score=123.65 Aligned_cols=106 Identities=14% Similarity=0.206 Sum_probs=84.2
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCC---CeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKD---LNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~---~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
...+|||||||+|.++..+++..|. ..++|+|++..+++.+++. .+|+.++.+|+.++ |+++++||.|+..
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~-~~~~~~~~~d~~~l-----p~~~~sfD~I~~~ 158 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR-YPQVTFCVASSHRL-----PFADQSLDAIIRI 158 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh-CCCCeEEEeecccC-----CCcCCceeEEEEe
Confidence 3468999999999999999988764 3799999999999988654 46899999999876 5568899999877
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHH
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQ 251 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~ 251 (311)
+. | ..+++++|+|||||.|++.+.......++.+.
T Consensus 159 ~~-~--------------~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~ 193 (272)
T PRK11088 159 YA-P--------------CKAEELARVVKPGGIVITVTPGPRHLFELKGL 193 (272)
T ss_pred cC-C--------------CCHHHHHhhccCCCEEEEEeCCCcchHHHHHH
Confidence 53 2 34678999999999999987655444444433
No 24
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.44 E-value=3.1e-12 Score=111.97 Aligned_cols=119 Identities=18% Similarity=0.192 Sum_probs=90.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
.+.+|||||||+|.+++.+++++|+.+++|+|++..+++.+ +..++.++.++.+|+... + +.++|.|++
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~----~---~~~~D~v~~ 103 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE----L---PGKADAIFI 103 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh----c---CcCCCEEEE
Confidence 45789999999999999999999999999999876655544 345667899999997432 2 457999988
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCcee
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV 261 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~ 261 (311)
...... -+.+++.+.++|+|||.+++..-...-..+..+.+++.|+....
T Consensus 104 ~~~~~~-----------~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~ 153 (187)
T PRK08287 104 GGSGGN-----------LTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSELD 153 (187)
T ss_pred CCCccC-----------HHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcce
Confidence 643211 14789999999999999988643344456777888898876443
No 25
>PLN02244 tocopherol O-methyltransferase
Probab=99.43 E-value=1e-12 Score=125.80 Aligned_cols=101 Identities=20% Similarity=0.251 Sum_probs=79.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCC-CcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
.+.+|||||||+|.++..+++++ +.+++|||+++.+++.+ +..++ +++.|+++|+.++ ++++++||.|+
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~-----~~~~~~FD~V~ 191 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ-----PFEDGQFDLVW 191 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC-----CCCCCCccEEE
Confidence 45789999999999999999987 67999999877655544 34455 5799999999876 44689999998
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
....-.+..+ ...++++++|+|||||.|++.+
T Consensus 192 s~~~~~h~~d--------~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 192 SMESGEHMPD--------KRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred ECCchhccCC--------HHHHHHHHHHHcCCCcEEEEEE
Confidence 7644332211 1489999999999999999865
No 26
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.42 E-value=1.7e-12 Score=123.29 Aligned_cols=105 Identities=19% Similarity=0.206 Sum_probs=80.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc----CC-CcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS----GI-TNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~----~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||||||+|.++..+|+. +.+++|||+++.+++.++.+ +. .++.++++|++++ +..+++||.|+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l-----~~~~~~FD~Vi 203 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKL-----ADEGRKFDAVL 203 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHh-----hhccCCCCEEE
Confidence 3568999999999999999974 67999999987777666532 22 4899999999876 33578999998
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHH
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV 244 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~ 244 (311)
....-.+..+ ...++++++++|||||.+++.|.+...
T Consensus 204 ~~~vLeHv~d--------~~~~L~~l~r~LkPGG~liist~nr~~ 240 (322)
T PLN02396 204 SLEVIEHVAN--------PAEFCKSLSALTIPNGATVLSTINRTM 240 (322)
T ss_pred EhhHHHhcCC--------HHHHHHHHHHHcCCCcEEEEEECCcCH
Confidence 7542221111 148999999999999999998876543
No 27
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.42 E-value=1.7e-12 Score=116.21 Aligned_cols=101 Identities=15% Similarity=0.190 Sum_probs=83.6
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCC
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP 205 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP 205 (311)
..+|||||||+|.++..+++..|..+++|+|++..+++.++....+|+.++.+|+.+. +.+++++|.|+.+..-.
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~vi~~~~l~ 109 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKL-----PLEDSSFDLIVSNLALQ 109 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhC-----CCCCCceeEEEEhhhhh
Confidence 4689999999999999999999999999999998888777655446899999999876 33578999999886554
Q ss_pred CCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 206 DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 206 ~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
|..+. ..+++++.++|+|||.+++.+
T Consensus 110 ~~~~~--------~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 110 WCDDL--------SQALSELARVLKPGGLLAFST 135 (240)
T ss_pred hccCH--------HHHHHHHHHHcCCCcEEEEEe
Confidence 43221 478999999999999999875
No 28
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.42 E-value=2.3e-12 Score=112.87 Aligned_cols=116 Identities=19% Similarity=0.183 Sum_probs=84.9
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHH----HHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~----~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
+.+|||||||+|.+++.+|...|+.+++|+|.++.++ +++++.+++|++++++|+.++ + .++++|.|+++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~-----~-~~~~fD~I~s~ 116 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDF-----Q-HEEQFDVITSR 116 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhc-----c-ccCCccEEEeh
Confidence 5789999999999999999888889999999876544 444456778899999999875 1 25789999876
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHH---HHHHhcCCCce
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMK---QQFLEYGKGKL 260 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~---~~l~~~g~~~~ 260 (311)
. + ++ -+.+++.+.++|+|||.+++.... .....+. +.+.-.|...+
T Consensus 117 ~---~----~~-----~~~~~~~~~~~LkpgG~lvi~~~~-~~~~~~~~~~e~~~~~~~~~~ 165 (181)
T TIGR00138 117 A---L----AS-----LNVLLELTLNLLKVGGYFLAYKGK-KYLDEIEEAKRKCQVLGVEPL 165 (181)
T ss_pred h---h----hC-----HHHHHHHHHHhcCCCCEEEEEcCC-CcHHHHHHHHHhhhhcCceEe
Confidence 3 1 11 147889999999999999987433 2333333 33333566543
No 29
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.41 E-value=2.1e-12 Score=111.73 Aligned_cols=105 Identities=19% Similarity=0.306 Sum_probs=79.9
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
...+||||||+|.+++.++++.|+.+++++|+++.|++.++ .++++++.++.+|..+. + .++.||.|++|
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~----~--~~~~fD~Iv~N 105 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEA----L--PDGKFDLIVSN 105 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT----C--CTTCEEEEEE-
T ss_pred CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccc----c--cccceeEEEEc
Confidence 57899999999999999999999989999998776665554 46777799999998654 2 36899999999
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
-| .....+ .-..+..+++++..+.|+|||.+++..
T Consensus 106 PP--~~~~~~-~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 106 PP--FHAGGD-DGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp ----SBTTSH-CHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cc--hhcccc-cchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 33 222221 111234799999999999999997654
No 30
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.40 E-value=1.5e-12 Score=117.22 Aligned_cols=109 Identities=18% Similarity=0.275 Sum_probs=87.6
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCC---CcEEEEEccccchhhhhhccCCCcEeEEEE-
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGI---TNGYFIATNATSTFRSIVASYPGKLILVSI- 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~---~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i- 200 (311)
.+.+|||||||-|.++..||+. +.+|+|+|+++.+++.++.+.. -++.+.+..++++.. ..++||+|+.
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~-----~~~~FDvV~cm 131 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLAS-----AGGQFDVVTCM 131 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHh-----cCCCccEEEEh
Confidence 4689999999999999999998 5899999999888777764322 246688888888732 2489999975
Q ss_pred ----eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHH
Q 021567 201 ----QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFL 253 (311)
Q Consensus 201 ----~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~ 253 (311)
+.||| ..|+..+.+.+||||.++++|-++....++...+.
T Consensus 132 EVlEHv~dp-------------~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ 175 (243)
T COG2227 132 EVLEHVPDP-------------ESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIG 175 (243)
T ss_pred hHHHccCCH-------------HHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHH
Confidence 46777 48999999999999999999988777666655443
No 31
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.40 E-value=6.9e-12 Score=110.67 Aligned_cols=116 Identities=16% Similarity=0.197 Sum_probs=85.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
.+.+|||+|||+|.++..+|+..|+..++|+|.++.+++.+ ++.+..|++++.+|+.+.++.. ....|.+++
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~----~~~~d~v~~ 115 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQL----APAPDRVCI 115 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhC----CCCCCEEEE
Confidence 46789999999999999999888889999999876555544 4457778999999997643321 223466666
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcC
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG 256 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g 256 (311)
....++ +.+++++.++|+|||.+++.+...+......+.+++.+
T Consensus 116 ~~~~~~------------~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~ 159 (196)
T PRK07402 116 EGGRPI------------KEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQ 159 (196)
T ss_pred ECCcCH------------HHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcC
Confidence 432221 48899999999999999998766555555566666544
No 32
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.40 E-value=8.8e-12 Score=113.15 Aligned_cols=133 Identities=19% Similarity=0.255 Sum_probs=96.5
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
...|||+|||+|.++..+++..|+.+++|+|++..+.+.+ ...+++|+.++++|+.+. + +++++|.|+.+
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~----~--~~~~fD~Vi~n 161 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEP----L--PGGKFDLIVSN 161 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhcc----C--cCCceeEEEEC
Confidence 4589999999999999999999999999999876655544 445677899999998653 2 36789999987
Q ss_pred CCCCCCCCchh----------hhhh--------hHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceeee
Q 021567 202 CPNPDFNRPEH----------RWRM--------VQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLV 263 (311)
Q Consensus 202 fpdP~~k~~h~----------krRl--------~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~~ 263 (311)
.|--.....+. +..+ ....+++.+.++|+|||.+++..... ..+.+.+.+.+.|+....+.
T Consensus 162 pPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~-~~~~~~~~l~~~gf~~v~~~ 240 (251)
T TIGR03534 162 PPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYD-QGEAVRALFEAAGFADVETR 240 (251)
T ss_pred CCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECcc-HHHHHHHHHHhCCCCceEEE
Confidence 44211000000 0000 11478999999999999999987543 35667888888898766665
Q ss_pred cc
Q 021567 264 QD 265 (311)
Q Consensus 264 ~d 265 (311)
+|
T Consensus 241 ~d 242 (251)
T TIGR03534 241 KD 242 (251)
T ss_pred eC
Confidence 44
No 33
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.39 E-value=3.9e-12 Score=116.81 Aligned_cols=101 Identities=18% Similarity=0.204 Sum_probs=77.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCC-CcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGI-TNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
...+|||||||+|.++..+++. +.+++|+|+++.+++.++ ..++ +|+.++++|+.++.+ ..+++||.|+
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~----~~~~~fD~V~ 117 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQ----HLETPVDLIL 117 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhh----hcCCCCCEEE
Confidence 3578999999999999999987 578999998876666554 3454 579999999988621 2468899998
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
++.+-.|..++ ..+++++.++|||||.+.+..
T Consensus 118 ~~~vl~~~~~~--------~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 118 FHAVLEWVADP--------KSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred ehhHHHhhCCH--------HHHHHHHHHHcCCCeEEEEEE
Confidence 76432222111 478999999999999998754
No 34
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.38 E-value=9.2e-12 Score=116.48 Aligned_cols=127 Identities=11% Similarity=0.157 Sum_probs=93.4
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCC-CcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
..+|||+|||+|.+++.+|++.|+.+++|+|+++.+++.+ +.+++ .++.++++|+.+. + ++.+||.|++
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~----~--~~~~fD~Iv~ 195 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA----L--PGRKYDLIVS 195 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc----c--CCCCccEEEE
Confidence 4689999999999999999999999999999977665554 44566 4699999998543 2 3557999998
Q ss_pred eCCCCCCCCch-----------hhhh--------hhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCcee
Q 021567 201 QCPNPDFNRPE-----------HRWR--------MVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV 261 (311)
Q Consensus 201 ~fpdP~~k~~h-----------~krR--------l~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~ 261 (311)
+ .|+.+... ++.. .....+++++.+.|+|||.+++.+.+.. +.+.+.+.+.++.+..
T Consensus 196 N--PPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~--~~v~~~~~~~~~~~~~ 271 (284)
T TIGR03533 196 N--PPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM--EALEEAYPDVPFTWLE 271 (284)
T ss_pred C--CCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH--HHHHHHHHhCCCceee
Confidence 8 23322110 0000 1236789999999999999999887633 5777888888876654
Q ss_pred e
Q 021567 262 L 262 (311)
Q Consensus 262 ~ 262 (311)
.
T Consensus 272 ~ 272 (284)
T TIGR03533 272 F 272 (284)
T ss_pred e
Confidence 3
No 35
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.38 E-value=7.6e-12 Score=108.78 Aligned_cols=125 Identities=18% Similarity=0.207 Sum_probs=90.1
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH----cCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~----~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
..+|||+|||+|.++..+++..+ +++|+|+++.+++.+++ .+. ++.++.+|+.+. .++++|.|+.+
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~-------~~~~fD~Vi~n 89 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKG-------VRGKFDVILFN 89 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCC-ceEEEEcccccc-------cCCcccEEEEC
Confidence 46899999999999999999865 89999987766655543 343 689999997654 14589999988
Q ss_pred CCCCCCCCchhh---------------hhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceee
Q 021567 202 CPNPDFNRPEHR---------------WRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 202 fpdP~~k~~h~k---------------rRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~ 262 (311)
.| +....... -+.+..++++++.++|+|||.+++.+....-..++.+.+.+.|+....+
T Consensus 90 ~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~ 163 (179)
T TIGR00537 90 PP--YLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIV 163 (179)
T ss_pred CC--CCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEE
Confidence 43 22111000 0122468999999999999999987644433557788888888865433
No 36
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.38 E-value=9.4e-13 Score=103.78 Aligned_cols=94 Identities=18% Similarity=0.238 Sum_probs=68.9
Q ss_pred EEEEeccccHHHHHHHhhC---CCCeEEEEchHHHHHHHHHHcC---CCcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 129 VVDIGSGNGLFLLGMARKR---KDLNFLGLELVTHCRDSLQLSG---ITNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 129 vLDIGcGtG~~~~~lA~~~---p~~~vvGiDi~~~a~~~a~~~~---~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
|||+|||+|..+..+++.+ |+.+++|+|+++.+++.+++.. -.+++++++|+.++ +..++++|.|+..+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l-----~~~~~~~D~v~~~~ 75 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDL-----PFSDGKFDLVVCSG 75 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCH-----HHHSSSEEEEEE-T
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHC-----cccCCCeeEEEEcC
Confidence 7999999999999999886 5689999999998888776543 13899999999986 22478999998843
Q ss_pred C-CCCCCCchhhhhhhHHHHHHHHHhcccCCe
Q 021567 203 P-NPDFNRPEHRWRMVQRSLVEAVSDLLVHDG 233 (311)
Q Consensus 203 p-dP~~k~~h~krRl~~~~~l~~i~rvLkpGG 233 (311)
. -.++. +-....+++++.++|+|||
T Consensus 76 ~~~~~~~------~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 76 LSLHHLS------PEELEALLRRIARLLRPGG 101 (101)
T ss_dssp TGGGGSS------HHHHHHHHHHHHHTEEEEE
T ss_pred CccCCCC------HHHHHHHHHHHHHHhCCCC
Confidence 2 11111 1122689999999999998
No 37
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.38 E-value=6.5e-12 Score=101.21 Aligned_cols=100 Identities=18% Similarity=0.201 Sum_probs=78.2
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
.+.++||||||+|.++..++++.|+.+++|+|.++.+.+.+ +..+..++.++.+|+...+. ....++|.|++
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~D~v~~ 94 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALE----DSLPEPDRVFI 94 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccCh----hhcCCCCEEEE
Confidence 35689999999999999999999889999999876655544 44567789999999876422 12458999988
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
..+... ..++++++++.|+|||.|++..
T Consensus 95 ~~~~~~-----------~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 95 GGSGGL-----------LQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred CCcchh-----------HHHHHHHHHHHcCCCCEEEEEe
Confidence 643211 1489999999999999999854
No 38
>PRK04266 fibrillarin; Provisional
Probab=99.38 E-value=6.7e-12 Score=113.73 Aligned_cols=126 Identities=15% Similarity=0.134 Sum_probs=91.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH--cCCCcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL--SGITNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~--~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
++.+|||+|||+|.++..+|+..+...|+|+|+++.+++.+.+ ...+|+.++.+|+..... ..+ .+.+||.|+...
T Consensus 72 ~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~-~~~-l~~~~D~i~~d~ 149 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPER-YAH-VVEKVDVIYQDV 149 (226)
T ss_pred CCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcch-hhh-ccccCCEEEECC
Confidence 4679999999999999999998776799999998766554321 123789999999875311 111 135699999888
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE-----eCc----HHHHHHHHHHHHhcCCCceee
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-----SDI----EEVMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~-----tD~----~~~~~~~~~~l~~~g~~~~~~ 262 (311)
++||. ...++++++++|||||.+++. .|+ ....+...+.+++.|+.....
T Consensus 150 ~~p~~----------~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~ 208 (226)
T PRK04266 150 AQPNQ----------AEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEV 208 (226)
T ss_pred CChhH----------HHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 87761 135789999999999999994 332 233345568888888875533
No 39
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.38 E-value=6e-12 Score=101.07 Aligned_cols=107 Identities=22% Similarity=0.287 Sum_probs=79.6
Q ss_pred CeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCC-CcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 127 PLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGI-TNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 127 ~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
.+|||+|||+|.+++.+++.. ..+++|+|+.+.+.+.++ ..+. +++.++++|+.+..+ +..++++|.|+.+
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~---~~~~~~~D~Iv~n 77 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPE---PLPDGKFDLIVTN 77 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHH---TCTTT-EEEEEE-
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchh---hccCceeEEEEEC
Confidence 579999999999999999997 789999999776655554 3454 579999999988742 2257899999998
Q ss_pred CCCCCCCCch--hhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 202 CPNPDFNRPE--HRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 202 fpdP~~k~~h--~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
- |+....+ ...+-....+++++.++|+|||.+++.+
T Consensus 78 p--P~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 78 P--PYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp ---STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred C--CCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 4 4432211 1112245799999999999999999875
No 40
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.36 E-value=7.8e-12 Score=119.48 Aligned_cols=125 Identities=17% Similarity=0.138 Sum_probs=92.0
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc-CCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS-GITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~-~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
.+.+|||||||+|.++..+++..+..+++|+|+++.+++.++++ ...|+.++.+|++++ ++++++||.|+++..
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~l-----p~~~~sFDvVIs~~~ 187 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDL-----PFPTDYADRYVSAGS 187 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhC-----CCCCCceeEEEEcCh
Confidence 35689999999999999999988888999999998888777654 245799999999876 445789999987643
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcH-H---------------HHHHHHHHHHhcCCCceee
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE-E---------------VMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~-~---------------~~~~~~~~l~~~g~~~~~~ 262 (311)
-.+..+. ...+++++++|+|||.+.+..... . -.+++.+.+++.|+....+
T Consensus 188 L~~~~d~--------~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i 254 (340)
T PLN02490 188 IEYWPDP--------QRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKL 254 (340)
T ss_pred hhhCCCH--------HHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEE
Confidence 2221111 368999999999999998753210 0 1245566777777765443
No 41
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.35 E-value=1.4e-11 Score=119.29 Aligned_cols=117 Identities=19% Similarity=0.223 Sum_probs=84.1
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH----cC---CCcEEEEEccccchhhhhhccCCCcEeEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SG---ITNGYFIATNATSTFRSIVASYPGKLILV 198 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~----~~---~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V 198 (311)
..+|||+|||+|.+++.+++++|+.+++++|.++.|++.+++ ++ ..+++++.+|+... + .+.+||.|
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~----~--~~~~fDlI 302 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG----V--EPFRFNAV 302 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc----C--CCCCEEEE
Confidence 458999999999999999999999999999998777666543 33 24789999987543 1 35689999
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc-HHHHHHHHHH
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-EEVMLRMKQQ 251 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~-~~~~~~~~~~ 251 (311)
++|-|-.. .+.-...+..++++.++++|+|||.+++..+- .+|...+.+.
T Consensus 303 lsNPPfh~---~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~ 353 (378)
T PRK15001 303 LCNPPFHQ---QHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKI 353 (378)
T ss_pred EECcCccc---CccCCHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHH
Confidence 99833221 11100112357899999999999999998632 4455444443
No 42
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.34 E-value=1.9e-11 Score=108.47 Aligned_cols=138 Identities=14% Similarity=0.151 Sum_probs=96.5
Q ss_pred hhhhhhhhhhhhhhhhccCCCch-hhhhhCCCchhhHhhcCCCCCCeEEEEeccccHHHHHHHhhCCC-CeEEEEchHHH
Q 021567 83 LNMVESGSAVWEFLKGRMLPGVS-ALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKD-LNFLGLELVTH 160 (311)
Q Consensus 83 ~~~fe~~a~~wd~~~~r~~~~~~-~l~~~~~~~~~~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~-~~vvGiDi~~~ 160 (311)
.++|+..+..||..+.....+.. .... ..........+.+|||+|||+|.++..+++..|. .+++|+|+++.
T Consensus 2 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~ 75 (223)
T TIGR01934 2 QEMFDRIAPKYDLLNDLLSFGLHRLWRR------RAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSE 75 (223)
T ss_pred HhHHHHHHhhhhHHHHHHhcccHHHHHH------HHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHH
Confidence 45677788888888776554431 1110 0111111114679999999999999999999876 79999999877
Q ss_pred HHHHHHHc--CCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 161 CRDSLQLS--GITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 161 a~~~a~~~--~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
+++.++++ ...++.++.+|+.+. +..++.+|.|++++.-.+... ...+++++.+.|+|||.+++.
T Consensus 76 ~~~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~~D~i~~~~~~~~~~~--------~~~~l~~~~~~L~~gG~l~~~ 142 (223)
T TIGR01934 76 MLEVAKKKSELPLNIEFIQADAEAL-----PFEDNSFDAVTIAFGLRNVTD--------IQKALREMYRVLKPGGRLVIL 142 (223)
T ss_pred HHHHHHHHhccCCCceEEecchhcC-----CCCCCcEEEEEEeeeeCCccc--------HHHHHHHHHHHcCCCcEEEEE
Confidence 77666543 235799999999876 234678999987653222111 147899999999999999975
Q ss_pred e
Q 021567 239 S 239 (311)
Q Consensus 239 t 239 (311)
.
T Consensus 143 ~ 143 (223)
T TIGR01934 143 E 143 (223)
T ss_pred E
Confidence 3
No 43
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.34 E-value=2.3e-11 Score=107.68 Aligned_cols=119 Identities=13% Similarity=0.184 Sum_probs=90.8
Q ss_pred CCCeEEEEeccccHHHHHHHhh-CCCCeEEEEchHHHHHH----HHHHcC-CCcEEEEEccccchhhhhhccCCCcEeEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTHCRD----SLQLSG-ITNGYFIATNATSTFRSIVASYPGKLILV 198 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~-~p~~~vvGiDi~~~a~~----~a~~~~-~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V 198 (311)
.+..+||+|||+|.+++.+|+. .+..+++++|+++.+++ +++..+ ..|+.++.+|+.+.+.. .++.+|.|
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~----~~~~~D~V 115 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFT----INEKFDRI 115 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhh----cCCCCCEE
Confidence 4679999999999999999986 45679999998765554 444556 47899999999875322 24689999
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCC
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG 258 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~ 258 (311)
++...... ...+++++.++|+|||++++.+-..+....+.+.+++.|+.
T Consensus 116 ~~~~~~~~-----------~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~ 164 (198)
T PRK00377 116 FIGGGSEK-----------LKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGFN 164 (198)
T ss_pred EECCCccc-----------HHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCCC
Confidence 98643221 14789999999999999998655555567788888888873
No 44
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.32 E-value=5.3e-11 Score=103.78 Aligned_cols=123 Identities=15% Similarity=0.169 Sum_probs=98.4
Q ss_pred HhhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHH----HHHHHHcCCCcEEEEEccccchhhhhhccCCC
Q 021567 118 SAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLSGITNGYFIATNATSTFRSIVASYPG 193 (311)
Q Consensus 118 ~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a----~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~ 193 (311)
+..-.+ ++.+++|||||||.+++.+|...|..++++||-.+.+ .+++++.+.+|+.++.+||.+.+++ .+
T Consensus 28 s~L~~~-~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~----~~- 101 (187)
T COG2242 28 SKLRPR-PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPD----LP- 101 (187)
T ss_pred HhhCCC-CCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcC----CC-
Confidence 333344 5789999999999999999988999999999975544 4455567899999999999988542 23
Q ss_pred cEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCC
Q 021567 194 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG 258 (311)
Q Consensus 194 s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~ 258 (311)
++|.|++.-.- ++ +.+|+.+...|||||++++..-..+-...+.+.+++.|+.
T Consensus 102 ~~daiFIGGg~----------~i--~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ 154 (187)
T COG2242 102 SPDAIFIGGGG----------NI--EEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGR 154 (187)
T ss_pred CCCEEEECCCC----------CH--HHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCc
Confidence 79999998321 11 5899999999999999999776666677788889999883
No 45
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=2.2e-11 Score=110.56 Aligned_cols=117 Identities=21% Similarity=0.247 Sum_probs=101.4
Q ss_pred CCCeEEEEeccccHHHHHHHhh-CCCCeEEEEch----HHHHHHHHHHcCCCc-EEEEEccccchhhhhhccCCCcEeEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEL----VTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILV 198 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~-~p~~~vvGiDi----~~~a~~~a~~~~~~N-v~f~~~Da~~ll~~~~~~~~~s~D~V 198 (311)
++.+|||.|+|+|.++..||.. .|..+++.+|+ .+.|+++++..++.| +.+..+|+.+.. + +..||.|
T Consensus 94 pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~---~---~~~vDav 167 (256)
T COG2519 94 PGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI---D---EEDVDAV 167 (256)
T ss_pred CCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc---c---ccccCEE
Confidence 5789999999999999999974 78899999996 456778877778766 999999998762 2 3499999
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCce
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~ 260 (311)
++..|+|| +.++.+++.|+|||.+.+.+-+-+..+...+.+++.||-.+
T Consensus 168 ~LDmp~PW-------------~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~i 216 (256)
T COG2519 168 FLDLPDPW-------------NVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDI 216 (256)
T ss_pred EEcCCChH-------------HHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccch
Confidence 99999999 89999999999999999988887888888899999987654
No 46
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.32 E-value=2.7e-11 Score=111.34 Aligned_cols=131 Identities=14% Similarity=0.180 Sum_probs=93.5
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcC-CCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG-ITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~-~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
..++||+|||+|.+++.+++..|..+++|+|++..|++.++++- ..+++++++|+.+.+... ..+.||.|++|-|
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~---~~~~fDlVv~NPP- 162 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTA---LRGRVDILAANAP- 162 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchh---cCCCEeEEEECCC-
Confidence 35899999999999999999988889999999887777665431 123588999987653221 1357999998833
Q ss_pred CCCCCc-----------h-hhhhh--------hHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceee
Q 021567 205 PDFNRP-----------E-HRWRM--------VQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 205 P~~k~~-----------h-~krRl--------~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~ 262 (311)
+.... | .+..+ +...+++.+.+.|+|||.+++.+.... ...+.+.+.++|+.....
T Consensus 163 -y~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~-~~~v~~~l~~~g~~~~~~ 238 (251)
T TIGR03704 163 -YVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQ-APLAVEAFARAGLIARVA 238 (251)
T ss_pred -CCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcch-HHHHHHHHHHCCCCceee
Confidence 32110 0 00011 135888899999999999999987654 567888888888765443
No 47
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.32 E-value=1.4e-11 Score=117.30 Aligned_cols=100 Identities=17% Similarity=0.194 Sum_probs=74.6
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH--Hc--C-CCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ--LS--G-ITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~--~~--~-~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
.+.+|||||||+|.++..+++..+. .|+|+|.+..++.+++ .. + ..|+.++.+|++++ +. ++.||.|+
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~l-----p~-~~~FD~V~ 194 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQL-----PA-LKAFDTVF 194 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHC-----CC-cCCcCEEE
Confidence 4679999999999999999998754 6999998776554321 11 2 34799999999876 43 67899998
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+...-. |.+ --..++++++++|+|||.+++.+
T Consensus 195 s~~vl~------H~~--dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 195 SMGVLY------HRR--SPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred ECChhh------ccC--CHHHHHHHHHHhcCCCcEEEEEE
Confidence 753211 111 11478999999999999999864
No 48
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.32 E-value=2e-11 Score=112.95 Aligned_cols=101 Identities=16% Similarity=0.205 Sum_probs=78.2
Q ss_pred CCCeEEEEeccccHHHHHHHhh-CCCCeEEEEchHHHHHHHHH----HcCCCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTHCRDSLQ----LSGITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~-~p~~~vvGiDi~~~a~~~a~----~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
.+.+|||||||+|..++.+++. .+..+++|+|+++.+++.++ ..+.+|+.++.+|++++ +.++++||.|+
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l-----~~~~~~fD~Vi 151 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEAL-----PVADNSVDVII 151 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhC-----CCCCCceeEEE
Confidence 4689999999999998888776 45678999998776665554 34677999999998876 33578999998
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.++.-.+... .+..+++++++|||||+|++.
T Consensus 152 ~~~v~~~~~d--------~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 152 SNCVINLSPD--------KERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred EcCcccCCCC--------HHHHHHHHHHHcCCCcEEEEE
Confidence 7753222111 147899999999999999984
No 49
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.31 E-value=1.5e-11 Score=113.77 Aligned_cols=102 Identities=16% Similarity=0.141 Sum_probs=77.9
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcC--CCcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG--ITNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~--~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
++.+|||||||+|..+..+++.+ +.+++|+|+++.+++.++++. ..++.++++|+... ++++++||.|+...
T Consensus 52 ~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~-----~~~~~~FD~V~s~~ 125 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKK-----DFPENTFDMIYSRD 125 (263)
T ss_pred CCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccC-----CCCCCCeEEEEEhh
Confidence 46789999999999999998865 579999999988877776432 35799999998765 44678999998752
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.-.+... -....++++++++|||||.|++.
T Consensus 126 ~l~h~~~------~d~~~~l~~i~r~LkPGG~lvi~ 155 (263)
T PTZ00098 126 AILHLSY------ADKKKLFEKCYKWLKPNGILLIT 155 (263)
T ss_pred hHHhCCH------HHHHHHHHHHHHHcCCCcEEEEE
Confidence 2111100 01158999999999999999984
No 50
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.31 E-value=5.1e-11 Score=108.68 Aligned_cols=132 Identities=17% Similarity=0.279 Sum_probs=96.9
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCC-CcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGI-TNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
...+|||||||+|..++.+|++.+++.++|||+.+++.+.|+ .+++ ++++++++|+.++... . ...+||.|+
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~-~--~~~~fD~Ii 120 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKA-L--VFASFDLII 120 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhc-c--cccccCEEE
Confidence 367999999999999999999988899999998766555543 3444 5799999999998442 2 245799999
Q ss_pred EeCCCCCCCCchh-----hh---hh----hHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceee
Q 021567 200 IQCPNPDFNRPEH-----RW---RM----VQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 200 i~fpdP~~k~~h~-----kr---Rl----~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~ 262 (311)
+| +|.++.... .+ |+ .-+++++...++|||||.+++..--+ -..+..+.+..++++...+
T Consensus 121 ~N--PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e-rl~ei~~~l~~~~~~~k~i 192 (248)
T COG4123 121 CN--PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE-RLAEIIELLKSYNLEPKRI 192 (248)
T ss_pred eC--CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH-HHHHHHHHHHhcCCCceEE
Confidence 98 455443211 11 11 12899999999999999999976433 3445677778877765433
No 51
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.30 E-value=2.7e-11 Score=107.31 Aligned_cols=100 Identities=12% Similarity=0.108 Sum_probs=74.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
...+|||+|||+|.++..||++ +.+++|+|++..+++.+ ...++.|+.+..+|+.++ + .+++||.|+.
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~-----~-~~~~fD~I~~ 101 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNL-----T-FDGEYDFILS 101 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhC-----C-cCCCcCEEEE
Confidence 3578999999999999999987 57999999987666554 345677899999998765 2 1467999987
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
++.-.+... -..+.++++++++|+|||.+++.
T Consensus 102 ~~~~~~~~~------~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 102 TVVLMFLEA------KTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred ecchhhCCH------HHHHHHHHHHHHHcCCCcEEEEE
Confidence 754222110 11258999999999999996553
No 52
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=4e-11 Score=111.94 Aligned_cols=128 Identities=17% Similarity=0.294 Sum_probs=94.8
Q ss_pred eEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 128 LVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 128 ~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
.|||||||||.+++.+|.+.|+.+|+|+|++..|++.| +.+++.|+.++++|...- -.+.||.|+.|
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~-------~~~~fDlIVsN-- 183 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEP-------LRGKFDLIVSN-- 183 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccc-------cCCceeEEEeC--
Confidence 79999999999999999999999999999988766555 455666777777765443 24589999998
Q ss_pred CCCCCCc-----------hhhh--------hhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcC-CCceeee
Q 021567 204 NPDFNRP-----------EHRW--------RMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG-KGKLVLV 263 (311)
Q Consensus 204 dP~~k~~-----------h~kr--------Rl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g-~~~~~~~ 263 (311)
.|+.... .+.. .-+..++++++.+.|+|||.+.+..+.. ..+.+.+.+.+.+ +....+.
T Consensus 184 PPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~-q~~~v~~~~~~~~~~~~v~~~ 262 (280)
T COG2890 184 PPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLT-QGEAVKALFEDTGFFEIVETL 262 (280)
T ss_pred CCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCC-cHHHHHHHHHhcCCceEEEEE
Confidence 3443332 1111 1133789999999999999999987643 4677888899998 4444444
Q ss_pred cc
Q 021567 264 QD 265 (311)
Q Consensus 264 ~d 265 (311)
+|
T Consensus 263 ~d 264 (280)
T COG2890 263 KD 264 (280)
T ss_pred ec
Confidence 43
No 53
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.29 E-value=6.6e-11 Score=115.36 Aligned_cols=132 Identities=17% Similarity=0.214 Sum_probs=96.5
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH----cCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~----~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
+.++||||||+|.+++.+++..|+.+++|+|+++.|++.+++ .+. ++.++++|+.+.. ++ .+++||.|++|
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl~e~~---l~-~~~~FDLIVSN 326 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA-RVEFAHGSWFDTD---MP-SEGKWDIIVSN 326 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEcchhccc---cc-cCCCccEEEEC
Confidence 468999999999999999999999999999998777766543 343 7999999986531 11 24579999988
Q ss_pred CCCCCCCCch-----------hhhhh--------hHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceee
Q 021567 202 CPNPDFNRPE-----------HRWRM--------VQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 202 fpdP~~k~~h-----------~krRl--------~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~ 262 (311)
- |...... ++..+ +.+++++.+.+.|+|||.+++..+. ...+.+.+.+.+.|+....+
T Consensus 327 P--PYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~-~Q~e~V~~ll~~~Gf~~v~v 403 (423)
T PRK14966 327 P--PYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF-DQGAAVRGVLAENGFSGVET 403 (423)
T ss_pred C--CCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc-cHHHHHHHHHHHCCCcEEEE
Confidence 3 3322110 01111 2257888889999999999998865 45677888888888876656
Q ss_pred ecc
Q 021567 263 VQD 265 (311)
Q Consensus 263 ~~d 265 (311)
.+|
T Consensus 404 ~kD 406 (423)
T PRK14966 404 LPD 406 (423)
T ss_pred EEc
Confidence 555
No 54
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.29 E-value=6.1e-11 Score=110.80 Aligned_cols=130 Identities=14% Similarity=0.198 Sum_probs=91.9
Q ss_pred CeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCCC-cEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 127 PLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGIT-NGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 127 ~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~~-Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
.+|||+|||+|.+++.++...|+.+++|+|++..+++.++ ..++. ++.|+++|+.+. + ++..||.|++|
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~----~--~~~~fDlIvsN 189 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP----L--AGQKIDIIVSN 189 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc----C--cCCCccEEEEC
Confidence 5899999999999999999999999999999876665554 44665 499999998653 2 23479999987
Q ss_pred CCCCCCCCch-----------hhhh--------hhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHH-hcCCCcee
Q 021567 202 CPNPDFNRPE-----------HRWR--------MVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFL-EYGKGKLV 261 (311)
Q Consensus 202 fpdP~~k~~h-----------~krR--------l~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~-~~g~~~~~ 261 (311)
+|+..... ++.. .....+++++.+.|+|||.+++.+.+. ..+.+.+.+. ..++....
T Consensus 190 --PPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~-q~~~~~~~~~~~~~~~~~~ 266 (284)
T TIGR00536 190 --PPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW-QQKSLKELLRIKFTWYDVE 266 (284)
T ss_pred --CCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc-HHHHHHHHHHhcCCCceeE
Confidence 23322211 0000 123678999999999999999988653 4445556666 35665555
Q ss_pred eecc
Q 021567 262 LVQD 265 (311)
Q Consensus 262 ~~~d 265 (311)
+.+|
T Consensus 267 ~~~D 270 (284)
T TIGR00536 267 NGRD 270 (284)
T ss_pred EecC
Confidence 5444
No 55
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.29 E-value=8.3e-11 Score=108.51 Aligned_cols=129 Identities=15% Similarity=0.199 Sum_probs=94.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc----CCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS----GITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~----~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
....|||+|||+|.++..+++..|+.+++|+|++..+++.++++ ...++.++.+|+... + .+++||.|+.
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~----~--~~~~fD~Iv~ 181 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP----L--PGGRFDLIVS 181 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc----C--CCCceeEEEE
Confidence 35689999999999999999999999999999988777666542 345899999998543 1 2578999998
Q ss_pred eCCCCCCCCch------------hhhh--------hhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCce
Q 021567 201 QCPNPDFNRPE------------HRWR--------MVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 201 ~fpdP~~k~~h------------~krR--------l~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~ 260 (311)
+.| +..... .... .....+++++.++|+|||.+++.+++. ..+.+.+.+.+.|+...
T Consensus 182 npP--y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~-~~~~~~~~l~~~gf~~v 258 (275)
T PRK09328 182 NPP--YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYD-QGEAVRALLAAAGFADV 258 (275)
T ss_pred CCC--cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECch-HHHHHHHHHHhCCCcee
Confidence 733 221110 0000 112578899999999999999988653 45677788888887644
Q ss_pred ee
Q 021567 261 VL 262 (311)
Q Consensus 261 ~~ 262 (311)
..
T Consensus 259 ~~ 260 (275)
T PRK09328 259 ET 260 (275)
T ss_pred EE
Confidence 44
No 56
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.29 E-value=6e-11 Score=112.17 Aligned_cols=126 Identities=12% Similarity=0.196 Sum_probs=91.0
Q ss_pred CeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCCC-cEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 127 PLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGIT-NGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 127 ~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~~-Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
.+|||+|||+|.+++.+++.+|+.+++|+|+++.+++.++ .+++. ++.++++|+.+. + ++++||.|+.+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~----l--~~~~fDlIvsN 208 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA----L--PGRRYDLIVSN 208 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh----C--CCCCccEEEEC
Confidence 5899999999999999999999999999999876665554 44653 599999998653 2 24689999987
Q ss_pred CCCCCCCCch-----------hhh--------hhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceee
Q 021567 202 CPNPDFNRPE-----------HRW--------RMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 202 fpdP~~k~~h-----------~kr--------Rl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~ 262 (311)
.|...... ++. --....+++++.+.|+|||.+++.+... .+.+.+.+...++.+..+
T Consensus 209 --PPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~--~~~~~~~~~~~~~~~~~~ 284 (307)
T PRK11805 209 --PPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS--RVHLEEAYPDVPFTWLEF 284 (307)
T ss_pred --CCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC--HHHHHHHHhhCCCEEEEe
Confidence 23322100 000 0123578999999999999999988764 335667777777655444
No 57
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.29 E-value=1.7e-11 Score=108.70 Aligned_cols=119 Identities=17% Similarity=0.080 Sum_probs=92.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
....|+|||||+|..+..|++++|++.++|+|-|..++.+|+. .+.|++|..+|+.+.- ++...|+++.|-.-
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~-rlp~~~f~~aDl~~w~------p~~~~dllfaNAvl 102 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQ-RLPDATFEEADLRTWK------PEQPTDLLFANAVL 102 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHH-hCCCCceecccHhhcC------CCCccchhhhhhhh
Confidence 3568999999999999999999999999999999999999854 4679999999998761 46778888776444
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe-Cc--HHHHHHHHHHHHhcCCC
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS-DI--EEVMLRMKQQFLEYGKG 258 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t-D~--~~~~~~~~~~l~~~g~~ 258 (311)
.|..+ | .++|..+...|.|||++.++. || +....-|.+..++.++.
T Consensus 103 qWlpd-H-------~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~ 151 (257)
T COG4106 103 QWLPD-H-------PELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFA 151 (257)
T ss_pred hhccc-c-------HHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchh
Confidence 44322 1 488999999999999999984 33 23345566666655443
No 58
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.29 E-value=1.6e-11 Score=114.24 Aligned_cols=100 Identities=21% Similarity=0.255 Sum_probs=69.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHH----HHHHHHHcCCC-cEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~----a~~~a~~~~~~-Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||||||.|.+++.+|+++ +++|+||.+|+. +.+++++.|+. ++.+..+|..++ +..||.|+
T Consensus 62 ~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~--------~~~fD~Iv 132 (273)
T PF02353_consen 62 PGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL--------PGKFDRIV 132 (273)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----------S-SEEE
T ss_pred CCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc--------CCCCCEEE
Confidence 57899999999999999999998 789999999865 44555566774 599999998765 34899987
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
..-.--+. .+--.+.|++.+.++|||||++++.+
T Consensus 133 Si~~~Ehv------g~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 133 SIEMFEHV------GRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp EESEGGGT------CGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred EEechhhc------ChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 65221111 01122699999999999999999864
No 59
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.28 E-value=1.3e-12 Score=102.36 Aligned_cols=95 Identities=19% Similarity=0.258 Sum_probs=58.0
Q ss_pred EEEeccccHHHHHHHhhCCCCeEEEEchHHHHH----HHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCC
Q 021567 130 VDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP 205 (311)
Q Consensus 130 LDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~----~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP 205 (311)
||||||+|.++..+++++|..+++|+|+++.++ ++....+..+...+..+..+.... ...++||.|++...-.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~fD~V~~~~vl~ 77 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDY---DPPESFDLVVASNVLH 77 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---C---CC----SEEEEE-TTS
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhc---ccccccceehhhhhHh
Confidence 799999999999999999999999999887666 344444545666666665554221 1236999999887665
Q ss_pred CCCCchhhhhhhHHHHHHHHHhcccCCeEE
Q 021567 206 DFNRPEHRWRMVQRSLVEAVSDLLVHDGKV 235 (311)
Q Consensus 206 ~~k~~h~krRl~~~~~l~~i~rvLkpGG~l 235 (311)
|..+ .+.+++.++++|+|||.|
T Consensus 78 ~l~~--------~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 78 HLED--------IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --S---------HHHHHHHHTTT-TSS-EE
T ss_pred hhhh--------HHHHHHHHHHHcCCCCCC
Confidence 5421 148999999999999986
No 60
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.28 E-value=1.9e-11 Score=109.75 Aligned_cols=102 Identities=16% Similarity=0.124 Sum_probs=72.2
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH-cCC---------------CcEEEEEccccchhhhhh
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL-SGI---------------TNGYFIATNATSTFRSIV 188 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~-~~~---------------~Nv~f~~~Da~~ll~~~~ 188 (311)
++.++||+|||.|..++.||++ +.+|+|+|+|+.|++.+.+ +++ .+|+++++|+.++.....
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 111 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL 111 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence 4579999999999999999987 7899999999999887532 332 368999999987621101
Q ss_pred ccCCCcEeEEEE-eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 189 ASYPGKLILVSI-QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 189 ~~~~~s~D~V~i-~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+..+..+|..++ ++| | -.++.+++.+.++|||||.+++.+
T Consensus 112 ~~fD~i~D~~~~~~l~-~----------~~R~~~~~~l~~lLkpgG~~ll~~ 152 (213)
T TIGR03840 112 GPVDAVYDRAALIALP-E----------EMRQRYAAHLLALLPPGARQLLIT 152 (213)
T ss_pred CCcCEEEechhhccCC-H----------HHHHHHHHHHHHHcCCCCeEEEEE
Confidence 111334444332 222 2 123589999999999999866653
No 61
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.28 E-value=7.7e-11 Score=105.68 Aligned_cols=141 Identities=13% Similarity=0.126 Sum_probs=94.7
Q ss_pred chhhhhhhhhhhhhhhhhhhccCCCc-hhhhhhCCCchhhHhhcCCCCCCeEEEEeccccHHHHHHHhhCC-CCeEEEEc
Q 021567 79 SIFGLNMVESGSAVWEFLKGRMLPGV-SALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLE 156 (311)
Q Consensus 79 s~~~~~~fe~~a~~wd~~~~r~~~~~-~~l~~~~~~~~~~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiD 156 (311)
+....++|+..+..|+.+......+. ..... .........++.+|||||||+|.++..+++..| +.+++|+|
T Consensus 10 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D 83 (239)
T PRK00216 10 QEKVAEMFDSIAPKYDLMNDLLSFGLHRVWRR------KTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLD 83 (239)
T ss_pred hHHHHHHHHHhhhhHHHHHHHHhcCCcHHHHH------HHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEe
Confidence 34566788888888887654333222 11100 001111111357899999999999999999987 78999999
Q ss_pred hHHHHHHHHHHc----C-CCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccC
Q 021567 157 LVTHCRDSLQLS----G-ITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVH 231 (311)
Q Consensus 157 i~~~a~~~a~~~----~-~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkp 231 (311)
+++.+++.++++ + ..++.++.+|+.+. +..++++|.|++.+.-.+... ...+++.+.++|+|
T Consensus 84 ~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~D~I~~~~~l~~~~~--------~~~~l~~~~~~L~~ 150 (239)
T PRK00216 84 FSEGMLAVGREKLRDLGLSGNVEFVQGDAEAL-----PFPDNSFDAVTIAFGLRNVPD--------IDKALREMYRVLKP 150 (239)
T ss_pred CCHHHHHHHHHhhcccccccCeEEEecccccC-----CCCCCCccEEEEecccccCCC--------HHHHHHHHHHhccC
Confidence 887666665442 2 24699999999876 224678999987543211111 14889999999999
Q ss_pred CeEEEEE
Q 021567 232 DGKVFLQ 238 (311)
Q Consensus 232 GG~l~~~ 238 (311)
||.+++.
T Consensus 151 gG~li~~ 157 (239)
T PRK00216 151 GGRLVIL 157 (239)
T ss_pred CcEEEEE
Confidence 9998874
No 62
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.27 E-value=1.9e-11 Score=113.33 Aligned_cols=100 Identities=16% Similarity=0.185 Sum_probs=77.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHH----HHHHHHHcCCC-cEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~----a~~~a~~~~~~-Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.++||||||.|.+++.+|+++ +++|+|+++|+. +.+++++.|+. |+++...|..++ ++.||.|+
T Consensus 72 ~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~--------~e~fDrIv 142 (283)
T COG2230 72 PGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF--------EEPFDRIV 142 (283)
T ss_pred CCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc--------ccccceee
Confidence 57899999999999999999999 899999999865 44555667886 899999998776 33489887
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
..=.--++... -.+.|++.++++|+|||.+.+.+
T Consensus 143 SvgmfEhvg~~------~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 143 SVGMFEHVGKE------NYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred ehhhHHHhCcc------cHHHHHHHHHhhcCCCceEEEEE
Confidence 54111111010 12699999999999999999865
No 63
>PRK08317 hypothetical protein; Provisional
Probab=99.26 E-value=5.1e-11 Score=106.44 Aligned_cols=101 Identities=16% Similarity=0.144 Sum_probs=78.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhC-CCCeEEEEchHHHHHHHHHHc---CCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHCRDSLQLS---GITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~-p~~~vvGiDi~~~a~~~a~~~---~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++.+|||||||+|.++..+++.. |..+++|+|++...++.++++ ...++.+..+|+... +..++.+|.|++
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~D~v~~ 93 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGL-----PFPDGSFDAVRS 93 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccC-----CCCCCCceEEEE
Confidence 45789999999999999999987 788999999987766666543 346899999998775 335788999987
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
...-.+..+ ...++++++++|+|||.+++.
T Consensus 94 ~~~~~~~~~--------~~~~l~~~~~~L~~gG~l~~~ 123 (241)
T PRK08317 94 DRVLQHLED--------PARALAEIARVLRPGGRVVVL 123 (241)
T ss_pred echhhccCC--------HHHHHHHHHHHhcCCcEEEEE
Confidence 643222111 147899999999999999875
No 64
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.26 E-value=4.7e-11 Score=118.91 Aligned_cols=101 Identities=18% Similarity=0.180 Sum_probs=78.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc--CC-CcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--GI-TNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~--~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
++.+|||||||+|.++..+|+.. +.+++|+|+++.+++.++++ +. .++.|+++|+... +.++++||.|+..
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~I~s~ 339 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKK-----TYPDNSFDVIYSR 339 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccC-----CCCCCCEEEEEEC
Confidence 45789999999999999999876 67999999998888777543 22 4799999998775 3357899999875
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
..-.|..+ .+.++++++++|||||.+++.+
T Consensus 340 ~~l~h~~d--------~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 340 DTILHIQD--------KPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred CcccccCC--------HHHHHHHHHHHcCCCeEEEEEE
Confidence 33222211 1489999999999999999863
No 65
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.25 E-value=4e-11 Score=107.41 Aligned_cols=96 Identities=20% Similarity=0.256 Sum_probs=74.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhCC-CCeEEEEchHHH----HHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~~~----a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||||||+|.++..+|+..+ +.+++|+|+++. |.+++++.+++|+.++++|+.+... ....||.|+
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~-----~~~~fD~Ii 151 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE-----PLAPYDRIY 151 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc-----ccCCCCEEE
Confidence 467999999999999999999854 568999997654 4455556678899999999976521 246899999
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+..+.+ .+.+.+.+.|+|||++++..
T Consensus 152 ~~~~~~--------------~~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 152 VTAAGP--------------KIPEALIDQLKEGGILVMPV 177 (215)
T ss_pred EcCCcc--------------cccHHHHHhcCcCcEEEEEE
Confidence 875433 33456788999999999864
No 66
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.24 E-value=8.5e-11 Score=105.23 Aligned_cols=108 Identities=13% Similarity=0.154 Sum_probs=76.0
Q ss_pred CCCeEEEEeccccHHHHHHHhhC-CCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchh--hhhh-ccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTF--RSIV-ASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~-p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll--~~~~-~~~~~s~D~V~i 200 (311)
++..|||||||||.++..++++. +...++|||+++. ....++.++++|+.+.. +.+. +..++++|.|+.
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S 123 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-------DPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMS 123 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-------cCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEec
Confidence 46789999999999999999985 4579999999761 23468999999998841 1110 124688999998
Q ss_pred eCCCCCCCCc-hhhhhh--hHHHHHHHHHhcccCCeEEEEEe
Q 021567 201 QCPNPDFNRP-EHRWRM--VQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 201 ~fpdP~~k~~-h~krRl--~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
++...|.-.. ...-+. ....+|+++.++|+|||.|++.+
T Consensus 124 ~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~ 165 (209)
T PRK11188 124 DMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKV 165 (209)
T ss_pred CCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 7532221111 000011 12578999999999999999964
No 67
>PRK06922 hypothetical protein; Provisional
Probab=99.24 E-value=4.5e-11 Score=121.58 Aligned_cols=109 Identities=15% Similarity=0.229 Sum_probs=81.0
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc---CCCcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS---GITNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~---~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
+.+|||||||+|.++..+|+.+|+.+++|+|+++.+++.++++ ...++.++++|+.++ +..+ ++++||.|++++
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dL-p~~f--edeSFDvVVsn~ 495 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINL-SSSF--EKESVDTIVYSS 495 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhC-cccc--CCCCEEEEEEch
Confidence 5799999999999999999999999999999988877776542 124688999999875 3223 578999998764
Q ss_pred CCCCC------CCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 203 PNPDF------NRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 203 pdP~~------k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
+-.+. ...+. .......++++++++|||||.+++.
T Consensus 496 vLH~L~syIp~~g~~f-~~edl~kiLreI~RVLKPGGrLII~ 536 (677)
T PRK06922 496 ILHELFSYIEYEGKKF-NHEVIKKGLQSAYEVLKPGGRIIIR 536 (677)
T ss_pred HHHhhhhhcccccccc-cHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 32211 00000 0012258999999999999999996
No 68
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.23 E-value=1.6e-10 Score=105.90 Aligned_cols=120 Identities=16% Similarity=0.205 Sum_probs=97.0
Q ss_pred CCCeEEEEeccccHHHHHHHhh-CCCCeEEEEch----HHHHHHHHHHcCC-CcEEEEEccccchhhhhhc-cCCCcEeE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEL----VTHCRDSLQLSGI-TNGYFIATNATSTFRSIVA-SYPGKLIL 197 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~-~p~~~vvGiDi----~~~a~~~a~~~~~-~Nv~f~~~Da~~ll~~~~~-~~~~s~D~ 197 (311)
++.+|||.|+|+|.++..||+. .|..+++..|. .+.|.++.+..++ +|+.+.+.|+..- -|+ ..+..+|.
T Consensus 40 pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~---g~~~~~~~~~Da 116 (247)
T PF08704_consen 40 PGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEE---GFDEELESDFDA 116 (247)
T ss_dssp TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG-----STT-TTSEEE
T ss_pred CCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecc---cccccccCcccE
Confidence 4789999999999999999976 78999999996 4567777777787 4899999998642 121 12478999
Q ss_pred EEEeCCCCCCCCchhhhhhhHHHHHHHHHhcc-cCCeEEEEEeCcHHHHHHHHHHHHhcCCCce
Q 021567 198 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLL-VHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 198 V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvL-kpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~ 260 (311)
|++..|+|| ..+..+.++| +|||++.+-+-+-+....+++.++++||..+
T Consensus 117 vfLDlp~Pw-------------~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~i 167 (247)
T PF08704_consen 117 VFLDLPDPW-------------EAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTDI 167 (247)
T ss_dssp EEEESSSGG-------------GGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEEE
T ss_pred EEEeCCCHH-------------HHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCeee
Confidence 999999999 7789999999 8999999989888888899999999997554
No 69
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.23 E-value=4.1e-11 Score=108.02 Aligned_cols=96 Identities=19% Similarity=0.181 Sum_probs=72.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH-HcCC---------------CcEEEEEccccchhhhhh
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ-LSGI---------------TNGYFIATNATSTFRSIV 188 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~-~~~~---------------~Nv~f~~~Da~~ll~~~~ 188 (311)
.+.+|||+|||.|..++.||++ +.+|+|||+++.|++++. ++++ .+|++.++|+.++...
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~-- 112 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA-- 112 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc--
Confidence 4579999999999999999987 789999999999998863 3333 3688999999887211
Q ss_pred ccCCCcEeEEE-----EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 189 ASYPGKLILVS-----IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 189 ~~~~~s~D~V~-----i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
..+.||.|+ +.+| |. .++++++.+.++|+|||.+++
T Consensus 113 --~~~~fd~v~D~~~~~~l~-~~----------~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 113 --DLADVDAVYDRAALIALP-EE----------MRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred --cCCCeeEEEehHhHhhCC-HH----------HHHHHHHHHHHHcCCCCeEEE
Confidence 124677775 3332 21 235899999999999997555
No 70
>PRK14967 putative methyltransferase; Provisional
Probab=99.23 E-value=2.6e-10 Score=102.77 Aligned_cols=125 Identities=18% Similarity=0.184 Sum_probs=86.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++.+|||+|||+|.++..+++.. ..+++|+|++..+++.++ ..+. ++.++.+|+.+. + .+++||.|++
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~~~~----~--~~~~fD~Vi~ 107 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLAGV-DVDVRRGDWARA----V--EFRPFDVVVS 107 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHhCC-eeEEEECchhhh----c--cCCCeeEEEE
Confidence 35789999999999999999863 358999999876665443 3344 688899987653 2 3678999998
Q ss_pred eCCCCCCCCchh---------------hhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCc
Q 021567 201 QCPNPDFNRPEH---------------RWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK 259 (311)
Q Consensus 201 ~fpdP~~k~~h~---------------krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~ 259 (311)
+-| +...... ........+++++.++|||||.+++............+.+++.++..
T Consensus 108 npP--y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~ 179 (223)
T PRK14967 108 NPP--YVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDA 179 (223)
T ss_pred CCC--CCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCe
Confidence 733 2211000 00112357889999999999999986433323456677777777653
No 71
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.21 E-value=1.6e-10 Score=101.33 Aligned_cols=123 Identities=14% Similarity=0.083 Sum_probs=80.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhC-CCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchh--hhhh-ccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTF--RSIV-ASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~-p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll--~~~~-~~~~~s~D~V~i 200 (311)
.+.+|||||||+|.++..++++. +..+++|+|+++.. ...++.++++|+.+.. .... ..+++.+|.|+.
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~ 104 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMS 104 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-------cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEc
Confidence 46789999999999999999885 56789999998743 2357899999987531 1110 013668999998
Q ss_pred eCCCCC---CCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHh
Q 021567 201 QCPNPD---FNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLE 254 (311)
Q Consensus 201 ~fpdP~---~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~ 254 (311)
+.+.+. +.-.|.......+.+++.+.++|+|||.+++......-...+.+.+..
T Consensus 105 ~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~ 161 (188)
T TIGR00438 105 DAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRK 161 (188)
T ss_pred CCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHh
Confidence 754220 001111111122588999999999999999965332223334444444
No 72
>PRK14968 putative methyltransferase; Provisional
Probab=99.21 E-value=4.4e-10 Score=97.39 Aligned_cols=128 Identities=15% Similarity=0.190 Sum_probs=87.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCc--EEEEEccccchhhhhhccCCCcEeEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITN--GYFIATNATSTFRSIVASYPGKLILV 198 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~N--v~f~~~Da~~ll~~~~~~~~~s~D~V 198 (311)
++.++||+|||+|.++..++++ +.+++|+|+++.+.+.+ ...+..+ +.++++|+.+. + .+..+|.|
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~----~--~~~~~d~v 94 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP----F--RGDKFDVI 94 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc----c--cccCceEE
Confidence 4568999999999999999988 68999999876655544 3445555 89999997653 2 24589999
Q ss_pred EEeCCCCCCC-C-c---------hh--hhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCce
Q 021567 199 SIQCPNPDFN-R-P---------EH--RWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 199 ~i~fpdP~~k-~-~---------h~--krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~ 260 (311)
+.+.|--... . . +. ..+...+.+++++.++|+|||.+++......-.+.+.+.+.+.|+...
T Consensus 95 i~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~ 169 (188)
T PRK14968 95 LFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAE 169 (188)
T ss_pred EECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeee
Confidence 8874311000 0 0 00 001123578999999999999988765433234567778888887644
No 73
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.20 E-value=2.9e-10 Score=114.38 Aligned_cols=131 Identities=15% Similarity=0.199 Sum_probs=95.4
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCC-CcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
..+|||||||+|.+++.+++..|+.+++|+|+++.|++.++ ..++ .++.++++|+.+. + .++.||.|++
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~----~--~~~~fDlIvs 212 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN----I--EKQKFDFIVS 212 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh----C--cCCCccEEEE
Confidence 35899999999999999999999999999999877666554 3455 3699999997543 2 3568999998
Q ss_pred eCCCCCCCCch------------hhhh--------hhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCce
Q 021567 201 QCPNPDFNRPE------------HRWR--------MVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 201 ~fpdP~~k~~h------------~krR--------l~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~ 260 (311)
|- |+..... +... .....+++++.++|+|||.+++.+.. ...+.+.+.+.+.|+...
T Consensus 213 NP--PYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~-~q~~~v~~~~~~~g~~~~ 289 (506)
T PRK01544 213 NP--PYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGF-KQEEAVTQIFLDHGYNIE 289 (506)
T ss_pred CC--CCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECC-chHHHHHHHHHhcCCCce
Confidence 73 2222100 0000 12357888999999999999998754 356677788888888766
Q ss_pred eeecc
Q 021567 261 VLVQD 265 (311)
Q Consensus 261 ~~~~d 265 (311)
.+.+|
T Consensus 290 ~~~~D 294 (506)
T PRK01544 290 SVYKD 294 (506)
T ss_pred EEEec
Confidence 56555
No 74
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.20 E-value=1.8e-10 Score=101.90 Aligned_cols=98 Identities=9% Similarity=-0.013 Sum_probs=70.9
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
..+|||||||+|.++..+|++ +..|+|+|+++.+++.++ ..++ ++.+..+|+... + .++++|.|+.+
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~-----~-~~~~fD~I~~~ 101 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENL-PLRTDAYDINAA-----A-LNEDYDFIFST 101 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCC-CceeEeccchhc-----c-ccCCCCEEEEe
Confidence 468999999999999999986 579999999877666543 3455 377777776543 2 14579999876
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.+-.+... -..+.++++++++|+|||.+++.
T Consensus 102 ~~~~~~~~------~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 102 VVFMFLQA------GRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred cccccCCH------HHHHHHHHHHHHHhCCCcEEEEE
Confidence 44222111 11258999999999999996654
No 75
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.20 E-value=9.8e-11 Score=101.33 Aligned_cols=123 Identities=18% Similarity=0.282 Sum_probs=88.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCc-EEEEEccccchhhhhhc------cCCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITN-GYFIATNATSTFRSIVA------SYPG 193 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~N-v~f~~~Da~~ll~~~~~------~~~~ 193 (311)
+.++|||+|||+|.++..|++..-....+|+|.++.|.+.| ++.+.+| ++|.+.|+.+- ..++ ...+
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~--~~~~~qfdlvlDKG 144 (227)
T KOG1271|consen 67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP--DFLSGQFDLVLDKG 144 (227)
T ss_pred cccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC--cccccceeEEeecC
Confidence 45699999999999999999984345699999987766554 4567777 99999999873 1110 0235
Q ss_pred cEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCc
Q 021567 194 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK 259 (311)
Q Consensus 194 s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~ 259 (311)
++|.|.+. ||-- . .|+ ..++..+.+.|+|||+|++ |.+.....++++.++..++..
T Consensus 145 T~DAisLs-~d~~-~----~r~---~~Y~d~v~~ll~~~gifvI-tSCN~T~dELv~~f~~~~f~~ 200 (227)
T KOG1271|consen 145 TLDAISLS-PDGP-V----GRL---VVYLDSVEKLLSPGGIFVI-TSCNFTKDELVEEFENFNFEY 200 (227)
T ss_pred ceeeeecC-CCCc-c----cce---eeehhhHhhccCCCcEEEE-EecCccHHHHHHHHhcCCeEE
Confidence 55555553 4431 1 111 2567788899999999998 456667889999999887653
No 76
>PRK01581 speE spermidine synthase; Validated
Probab=99.20 E-value=3e-10 Score=108.90 Aligned_cols=127 Identities=16% Similarity=0.122 Sum_probs=97.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc-----------CCCcEEEEEccccchhhhhhccCCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS-----------GITNGYFIATNATSTFRSIVASYPG 193 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~-----------~~~Nv~f~~~Da~~ll~~~~~~~~~ 193 (311)
...+||+||||+|..+..+.+..+..++++||+++..++.|+.. ..++++++.+|+.+.+.. .++
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~----~~~ 225 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS----PSS 225 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh----cCC
Confidence 45799999999999988888765667999999988877777641 235799999999987542 367
Q ss_pred cEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHH----HHHHHHHHhcCCC
Q 021567 194 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVM----LRMKQQFLEYGKG 258 (311)
Q Consensus 194 s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~----~~~~~~l~~~g~~ 258 (311)
.+|+|++.+|||.-. .-.++...+|++.+++.|+|||++++...+..+. ..+.+.+++.++.
T Consensus 226 ~YDVIIvDl~DP~~~---~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~ 291 (374)
T PRK01581 226 LYDVIIIDFPDPATE---LLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLT 291 (374)
T ss_pred CccEEEEcCCCcccc---chhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCc
Confidence 899999999988521 1235666899999999999999999887655433 3345666776553
No 77
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.19 E-value=6.9e-11 Score=99.39 Aligned_cols=97 Identities=20% Similarity=0.295 Sum_probs=73.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
+..+|||||||+|.++..+++.. .+++|+|+++.+.+. .++.....+.... +.+++++|.|+++..-
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~--~~~~g~D~~~~~~~~------~~~~~~~~~~~~~-----~~~~~~fD~i~~~~~l 88 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKRG--FEVTGVDISPQMIEK------RNVVFDNFDAQDP-----PFPDGSFDLIICNDVL 88 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHTT--SEEEEEESSHHHHHH------TTSEEEEEECHTH-----HCHSSSEEEEEEESSG
T ss_pred CCCEEEEEcCCCCHHHHHHHHhC--CEEEEEECCHHHHhh------hhhhhhhhhhhhh-----hccccchhhHhhHHHH
Confidence 57899999999999999998773 499999999888776 3444544444433 2247899999988543
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcH
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE 242 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~ 242 (311)
.+..+ -..++++++++|||||.+++.+...
T Consensus 89 ~~~~d--------~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 89 EHLPD--------PEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp GGSSH--------HHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred hhccc--------HHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 33221 1589999999999999999987543
No 78
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.19 E-value=4.7e-11 Score=110.59 Aligned_cols=102 Identities=17% Similarity=0.203 Sum_probs=74.0
Q ss_pred CCeEEEEeccccH----HHHHHHhhCC-----CCeEEEEchHHHHHHHHHHcC--------C------------------
Q 021567 126 QPLVVDIGSGNGL----FLLGMARKRK-----DLNFLGLELVTHCRDSLQLSG--------I------------------ 170 (311)
Q Consensus 126 ~~~vLDIGcGtG~----~~~~lA~~~p-----~~~vvGiDi~~~a~~~a~~~~--------~------------------ 170 (311)
..+|+|+|||||. +++.+++..+ +..++|+|+++.++++|++.- +
T Consensus 100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v 179 (264)
T smart00138 100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRV 179 (264)
T ss_pred CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEE
Confidence 4689999999997 4555566544 578999999999998886431 0
Q ss_pred -----CcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 171 -----TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 171 -----~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.+|.|.++|+.+. +.+++.||.|+....-.++.. -...+++++++++|+|||.+++.
T Consensus 180 ~~~ir~~V~F~~~dl~~~-----~~~~~~fD~I~crnvl~yf~~------~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 180 KPELKERVRFAKHNLLAE-----SPPLGDFDLIFCRNVLIYFDE------PTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred ChHHhCcCEEeeccCCCC-----CCccCCCCEEEechhHHhCCH------HHHHHHHHHHHHHhCCCeEEEEE
Confidence 3689999998875 324788999976422111111 01248999999999999999985
No 79
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.19 E-value=1.5e-10 Score=103.77 Aligned_cols=96 Identities=17% Similarity=0.240 Sum_probs=73.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhC-CCCeEEEEchHHHH----HHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHC----RDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~-p~~~vvGiDi~~~a----~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||||||+|.++..+++.. ++.+++|+|+++.. .++++..+..|+.++++|+.... ..++.||.|+
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~-----~~~~~fD~I~ 150 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGY-----EENAPYDRIY 150 (212)
T ss_pred CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC-----CcCCCcCEEE
Confidence 46799999999999999999874 45799999976544 44455567789999999987652 1457899999
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+...-+ .+.+.+.+.|||||++++..
T Consensus 151 ~~~~~~--------------~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 151 VTAAGP--------------DIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred ECCCcc--------------cchHHHHHhhCCCcEEEEEE
Confidence 875422 23356677899999998854
No 80
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.19 E-value=9e-11 Score=105.16 Aligned_cols=120 Identities=16% Similarity=0.173 Sum_probs=84.5
Q ss_pred eEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCC-CcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 128 LVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGI-TNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 128 ~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
+|||||||+|.++..+++.+|+.+++|+|++..+.+.++ ..++ .++.++.+|+... + .+++||.|+...
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~-----~-~~~~fD~I~~~~ 75 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD-----P-FPDTYDLVFGFE 75 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC-----C-CCCCCCEeehHH
Confidence 599999999999999999998899999998766554443 3454 4689999998654 2 145899997542
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcH------------H---HHHHHHHHHHhcCCCcee
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE------------E---VMLRMKQQFLEYGKGKLV 261 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~------------~---~~~~~~~~l~~~g~~~~~ 261 (311)
.-.+..+ .+.++++++++|+|||.+++..-.. . ...+..+.+.+.|+....
T Consensus 76 ~l~~~~~--------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~ 141 (224)
T smart00828 76 VIHHIKD--------KMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVE 141 (224)
T ss_pred HHHhCCC--------HHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEE
Confidence 2111111 1489999999999999999853110 0 123455677788876543
No 81
>PRK00811 spermidine synthase; Provisional
Probab=99.18 E-value=2.8e-10 Score=106.41 Aligned_cols=123 Identities=13% Similarity=0.110 Sum_probs=91.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc---------CCCcEEEEEccccchhhhhhccCCCcE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS---------GITNGYFIATNATSTFRSIVASYPGKL 195 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~---------~~~Nv~f~~~Da~~ll~~~~~~~~~s~ 195 (311)
+..+||+||||+|.++..++++.+..++++||+++..++.+++. .-++++++.+|+...+.. .++.+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~----~~~~y 151 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE----TENSF 151 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh----CCCcc
Confidence 45789999999999999999765567999999877666655431 135799999999987542 46789
Q ss_pred eEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc----HHHHHHHHHHHHhc
Q 021567 196 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEY 255 (311)
Q Consensus 196 D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~----~~~~~~~~~~l~~~ 255 (311)
|+|++..++|+... ..+...+|++.+++.|+|||.+++.+.+ ......+.+.+.+.
T Consensus 152 DvIi~D~~dp~~~~----~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~ 211 (283)
T PRK00811 152 DVIIVDSTDPVGPA----EGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEV 211 (283)
T ss_pred cEEEECCCCCCCch----hhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHH
Confidence 99999988886221 2355679999999999999999987543 23344445555554
No 82
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.18 E-value=1.4e-10 Score=109.79 Aligned_cols=100 Identities=11% Similarity=0.091 Sum_probs=73.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH---H--cCCCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ---L--SGITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~---~--~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||||||+|.++..++...+ ..++|+|.+..++..++ + ....++.+..+++.++ + ...+||.|+
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~l-----p-~~~~FD~V~ 193 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQL-----H-ELYAFDTVF 193 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHC-----C-CCCCcCEEE
Confidence 467999999999999999998865 37999998776554321 1 1235788899988776 3 235899998
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+...-.+..+ -..+|++++++|+|||.|++.+
T Consensus 194 s~gvL~H~~d--------p~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 194 SMGVLYHRKS--------PLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred EcchhhccCC--------HHHHHHHHHHhcCCCCEEEEEE
Confidence 7643222111 1479999999999999999864
No 83
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.18 E-value=2.9e-10 Score=109.04 Aligned_cols=115 Identities=17% Similarity=0.240 Sum_probs=81.6
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
..+|||||||+|.++..+++++|+..++++|+++.|++.++ .+++ ...++.+|+... .++.||.|+++
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l-~~~~~~~D~~~~-------~~~~fDlIvsN 268 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL-EGEVFASNVFSD-------IKGRFDMIISN 268 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-CCEEEEcccccc-------cCCCccEEEEC
Confidence 45899999999999999999999999999999877766554 3444 356777776432 25789999998
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc-HHHHHHHHHH
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-EEVMLRMKQQ 251 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~-~~~~~~~~~~ 251 (311)
.|-.+ ..... .....++++++.+.|+|||.+++.... .+|...+.+.
T Consensus 269 PPFH~--g~~~~-~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~~~ 316 (342)
T PRK09489 269 PPFHD--GIQTS-LDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLDET 316 (342)
T ss_pred CCccC--Ccccc-HHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHHHH
Confidence 54221 11000 012368999999999999999987643 4455444433
No 84
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.18 E-value=2.2e-10 Score=102.01 Aligned_cols=96 Identities=10% Similarity=0.112 Sum_probs=73.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCC-CCeEEEEchHHHHHH----HHHHcCCC-cEEEEEccccchhhhhhccCCCcEeEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTHCRD----SLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILV 198 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~~~a~~----~a~~~~~~-Nv~f~~~Da~~ll~~~~~~~~~s~D~V 198 (311)
++.+|||||||+|..+..+++..+ ..+++|+|+++.+.+ +++..+.. +++++.+|+.+.+ + ...+||.|
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~----~-~~~~fD~I 146 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGL----E-KHAPFDAI 146 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCC----c-cCCCccEE
Confidence 457999999999999999998753 569999998765444 44445654 5999999997652 2 35689999
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
++...-+ .+.+++.+.|+|||++++..
T Consensus 147 i~~~~~~--------------~~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 147 IVTAAAS--------------TIPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred EEccCcc--------------hhhHHHHHhcCcCcEEEEEE
Confidence 9885533 33467889999999998853
No 85
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.18 E-value=7.5e-10 Score=104.30 Aligned_cols=100 Identities=14% Similarity=0.105 Sum_probs=73.9
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEch---HHHHHHHHHHcCC-CcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL---VTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi---~~~a~~~a~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
+..++||||||+|.+++.+++++|+.+++++|+ .+.+.+++++.++ ++++++.+|+.+. .+ ++ .|.|++
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~---~~--~~--~D~v~~ 221 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKE---SY--PE--ADAVLF 221 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCC---CC--CC--CCEEEe
Confidence 357999999999999999999999999999996 3455566666666 4699999998753 12 22 477765
Q ss_pred eCCCC-CCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 201 QCPNP-DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 201 ~fpdP-~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
...-. |.. -....++++++++|+|||++++.
T Consensus 222 ~~~lh~~~~-------~~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 222 CRILYSANE-------QLSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred EhhhhcCCh-------HHHHHHHHHHHHhcCCCCEEEEE
Confidence 43211 110 01147899999999999999885
No 86
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.14 E-value=3.1e-10 Score=108.14 Aligned_cols=121 Identities=13% Similarity=0.110 Sum_probs=86.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHH----HHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~----~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++..+||+|||||.+++.++.. +..++|+|++..+++ +++..+++++.++++|+.++ +..++++|.|++
T Consensus 182 ~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l-----~~~~~~~D~Iv~ 254 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKL-----PLSSESVDAIAT 254 (329)
T ss_pred CcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcC-----CcccCCCCEEEE
Confidence 4678999999999999987764 679999998665544 45556777899999999886 334689999998
Q ss_pred eCCCCCCCCc---hhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCC
Q 021567 201 QCPNPDFNRP---EHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGK 257 (311)
Q Consensus 201 ~fpdP~~k~~---h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~ 257 (311)
+-| +-... .+.......+++++++++|+|||++.+.+.... .+.+.++..|+
T Consensus 255 dPP--yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~---~~~~~~~~~g~ 309 (329)
T TIGR01177 255 DPP--YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI---DLESLAEDAFR 309 (329)
T ss_pred CCC--CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC---CHHHHHhhcCc
Confidence 833 21110 000112346899999999999999988764432 33455667776
No 87
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=7e-10 Score=103.41 Aligned_cols=123 Identities=19% Similarity=0.269 Sum_probs=87.4
Q ss_pred cCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCcEEEEEccccchhhhhhccCCCcEe
Q 021567 121 YHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLI 196 (311)
Q Consensus 121 f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D 196 (311)
++......|||+|||.|-+++.+|+.+|+..++-+|++..|++.+ +.++.+|..+...|..+- -.++||
T Consensus 154 l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~-------v~~kfd 226 (300)
T COG2813 154 LPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEP-------VEGKFD 226 (300)
T ss_pred CCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccc-------cccccc
Confidence 333335589999999999999999999999999999876666555 446677766667775443 134999
Q ss_pred EEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeC-cHHHHHHHHHHHH
Q 021567 197 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD-IEEVMLRMKQQFL 253 (311)
Q Consensus 197 ~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD-~~~~~~~~~~~l~ 253 (311)
.|++| +| +...+.--..+-.+++++..+.|++||.|.+... ..+|...|.+.|.
T Consensus 227 ~IisN--PP-fh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg 281 (300)
T COG2813 227 LIISN--PP-FHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFG 281 (300)
T ss_pred EEEeC--CC-ccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcC
Confidence 99988 34 3332221111225999999999999999999764 3455555555544
No 88
>PRK04457 spermidine synthase; Provisional
Probab=99.14 E-value=7.4e-10 Score=102.51 Aligned_cols=122 Identities=9% Similarity=0.036 Sum_probs=87.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc----C-CCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS----G-ITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~----~-~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
....|||||||+|.++..+++..|+.+++++|+.+..++.+++. + .++++++.+|+.+.+.. .+..+|.|+
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~----~~~~yD~I~ 141 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV----HRHSTDVIL 141 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh----CCCCCCEEE
Confidence 35689999999999999999999999999999988777766543 2 25799999999887542 246899998
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe-CcHHHHHHHHHHHHh
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS-DIEEVMLRMKQQFLE 254 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t-D~~~~~~~~~~~l~~ 254 (311)
+...++. ..-..+...+|++++.++|+|||++.+.. .........++.+.+
T Consensus 142 ~D~~~~~----~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~ 193 (262)
T PRK04457 142 VDGFDGE----GIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLES 193 (262)
T ss_pred EeCCCCC----CCccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHH
Confidence 8642221 00012334799999999999999999842 222233344444544
No 89
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.14 E-value=7.1e-10 Score=101.73 Aligned_cols=113 Identities=18% Similarity=0.227 Sum_probs=80.0
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH----cCC-CcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGI-TNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~----~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
.+.+|||||||+|.+++.+++..+ ..++|+|+++.+++.+++ +++ .++.+.. .+.+||.|+
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~-------------~~~~fD~Vv 184 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGVELNVYLPQ-------------GDLKADVIV 184 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEcc-------------CCCCcCEEE
Confidence 467999999999999988777643 469999998776666543 333 1222111 123789998
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceee
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~ 262 (311)
.+.... ....+++++.++|||||.++++.-.....+.+.+.+.++|+.....
T Consensus 185 ani~~~-----------~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~ 236 (250)
T PRK00517 185 ANILAN-----------PLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEV 236 (250)
T ss_pred EcCcHH-----------HHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEE
Confidence 774211 1247899999999999999997655556677888888998865543
No 90
>PRK03612 spermidine synthase; Provisional
Probab=99.13 E-value=7.5e-10 Score=111.80 Aligned_cols=125 Identities=16% Similarity=0.193 Sum_probs=96.6
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCC-CeEEEEchHHHHHHHHHHc-----------CCCcEEEEEccccchhhhhhccCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKD-LNFLGLELVTHCRDSLQLS-----------GITNGYFIATNATSTFRSIVASYP 192 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~-~~vvGiDi~~~a~~~a~~~-----------~~~Nv~f~~~Da~~ll~~~~~~~~ 192 (311)
+..+|||||||+|..+..++++ |. .+++++|+++...+.++++ ..++++++.+|+.+.+.. .+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~----~~ 371 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK----LA 371 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh----CC
Confidence 4578999999999999999875 54 7999999988777777652 125799999999987542 35
Q ss_pred CcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc----HHHHHHHHHHHHhcCC
Q 021567 193 GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEYGK 257 (311)
Q Consensus 193 ~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~----~~~~~~~~~~l~~~g~ 257 (311)
+++|.|++++|+|+... ..++..++|++.+.+.|+|||.+.+++.. .+.+..+.+.+++.|+
T Consensus 372 ~~fDvIi~D~~~~~~~~---~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 372 EKFDVIIVDLPDPSNPA---LGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL 437 (521)
T ss_pred CCCCEEEEeCCCCCCcc---hhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC
Confidence 78999999999886321 12456679999999999999999987542 3344566777888776
No 91
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.13 E-value=3.8e-10 Score=105.59 Aligned_cols=98 Identities=12% Similarity=0.111 Sum_probs=72.9
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
..+|||||||+|.++..+|+. +.+|+|+|+++.+++.+ +..++ ++.+...|+... + .+++||.|+..
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~-----~-~~~~fD~I~~~ 191 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSA-----S-IQEEYDFILST 191 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhcc-----c-ccCCccEEEEc
Confidence 358999999999999999986 57999999987766554 34456 789988887654 2 26789999876
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
+.-.+... -..+.+++++.++|+|||.+++.
T Consensus 192 ~vl~~l~~------~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 192 VVLMFLNR------ERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred chhhhCCH------HHHHHHHHHHHHhcCCCcEEEEE
Confidence 43221110 01258999999999999996664
No 92
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.13 E-value=1.9e-09 Score=101.02 Aligned_cols=116 Identities=15% Similarity=0.192 Sum_probs=82.0
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCCC-cEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGIT-NGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~~-Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
.+.+|||+|||+|.+++.+++. ...+++|+|+++.+++.++ .+++. ++.+..++.... .++.||.|+
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~-------~~~~fDlVv 230 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP-------IEGKADVIV 230 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc-------cCCCceEEE
Confidence 4689999999999999988875 3468999998776665554 34543 366666653221 367899999
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCce
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~ 260 (311)
.+.... ....++.++.++|+|||.++++.-.....+.+.+.+++. +...
T Consensus 231 an~~~~-----------~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~ 279 (288)
T TIGR00406 231 ANILAE-----------VIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVV 279 (288)
T ss_pred EecCHH-----------HHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-Ccee
Confidence 875311 114789999999999999999765555566667767665 5433
No 93
>PTZ00146 fibrillarin; Provisional
Probab=99.11 E-value=1.5e-09 Score=101.39 Aligned_cols=124 Identities=15% Similarity=0.110 Sum_probs=86.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhC-CCCeEEEEchHHHHHHHHHH--cCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHCRDSLQL--SGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~-p~~~vvGiDi~~~a~~~a~~--~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
++.+|||+|||+|.++..+|+.. +...|+++|+++++.+.+.. ...+||.++.+|+..... +.....++|.|++.
T Consensus 132 pG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~--y~~~~~~vDvV~~D 209 (293)
T PTZ00146 132 PGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQK--YRMLVPMVDVIFAD 209 (293)
T ss_pred CCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhh--hhcccCCCCEEEEe
Confidence 46799999999999999999984 46689999998764433221 123799999999875311 11124579999988
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE-----eCc----HHHHHHHHHHHHhcCCCce
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-----SDI----EEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~-----tD~----~~~~~~~~~~l~~~g~~~~ 260 (311)
...|+ + ...++.++.+.|||||.|++. +|. +..+.+-++.+++.++..+
T Consensus 210 va~pd-----q-----~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~ 267 (293)
T PTZ00146 210 VAQPD-----Q-----ARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPK 267 (293)
T ss_pred CCCcc-----h-----HHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceE
Confidence 76664 1 125667899999999999985 222 2223333477888888754
No 94
>PHA03411 putative methyltransferase; Provisional
Probab=99.11 E-value=1.1e-09 Score=101.37 Aligned_cols=124 Identities=13% Similarity=0.018 Sum_probs=91.7
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCC
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP 205 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP 205 (311)
..+|||+|||+|.+++.++++.+..+++|+|+++.+++.++++ .+++.++++|+.++. .+.+||.|+++- |
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n-~~~v~~v~~D~~e~~------~~~kFDlIIsNP--P 135 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRL-LPEAEWITSDVFEFE------SNEKFDVVISNP--P 135 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh-CcCCEEEECchhhhc------ccCCCcEEEEcC--C
Confidence 4689999999999999999887778999999999998887654 568999999998761 256899999983 3
Q ss_pred CCCCchh--hh--hh----------hHHHHHHHHHhcccCCeEEEEEeCcHHHH------HHHHHHHHhcCCC
Q 021567 206 DFNRPEH--RW--RM----------VQRSLVEAVSDLLVHDGKVFLQSDIEEVM------LRMKQQFLEYGKG 258 (311)
Q Consensus 206 ~~k~~h~--kr--Rl----------~~~~~l~~i~rvLkpGG~l~~~tD~~~~~------~~~~~~l~~~g~~ 258 (311)
+...... +. +. .-.+++.....+|+|+|.+.+.-+..+++ .+....++++|+.
T Consensus 136 F~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~ 208 (279)
T PHA03411 136 FGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLV 208 (279)
T ss_pred ccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcE
Confidence 3321111 11 11 12578899999999999998876665553 3445667777763
No 95
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.10 E-value=4.6e-10 Score=111.85 Aligned_cols=103 Identities=18% Similarity=0.232 Sum_probs=78.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc--CCCcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--GITNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~--~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
++.++||||||+|.++..+++.. .+++|+|++..+++.++.. ..+|+.++++|+... . ++.+++++|.|++++
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~-~--~~~~~~~fD~I~~~~ 111 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSP-D--LNISDGSVDLIFSNW 111 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhccCCceEEEEeccccc-c--cCCCCCCEEEEehhh
Confidence 35689999999999999999874 5899999988887766432 246899999999643 1 234578999999876
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
+-.+.... ....++++++++|||||.+++.
T Consensus 112 ~l~~l~~~------~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 112 LLMYLSDK------EVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred hHHhCCHH------HHHHHHHHHHHhcCCCeEEEEE
Confidence 53332111 1148999999999999999884
No 96
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.10 E-value=1.7e-09 Score=94.94 Aligned_cols=154 Identities=12% Similarity=0.148 Sum_probs=103.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
++.+|||+|||.|.++..|.+. .+....|||++......+.++|+ .++++|+++-+.. | ++++||.|+++-.-
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~rGv---~Viq~Dld~gL~~-f--~d~sFD~VIlsqtL 85 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVARGV---SVIQGDLDEGLAD-F--PDQSFDYVILSQTL 85 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHcCC---CEEECCHHHhHhh-C--CCCCccEEehHhHH
Confidence 5789999999999999999875 58999999999888888777765 5899999987553 3 69999999876211
Q ss_pred CCCCCchhhhhhhH-HHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceeeeccccccccCCCCCCCCCCC-
Q 021567 205 PDFNRPEHRWRMVQ-RSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSF- 282 (311)
Q Consensus 205 P~~k~~h~krRl~~-~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~~~d~y~~~~~~~~~~~~~~~- 282 (311)
++ +.+ ...|+++.|+ |...+++.-+-.|...-...+ -.|.-.. ++. + +-.|...++-
T Consensus 86 ------Q~---~~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~-~~GrmPv--t~~-l-----Py~WYdTPNih 144 (193)
T PF07021_consen 86 ------QA---VRRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLL-LRGRMPV--TKA-L-----PYEWYDTPNIH 144 (193)
T ss_pred ------Hh---HhHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHH-hcCCCCC--CCC-C-----CCcccCCCCcc
Confidence 11 111 3778888666 667777666655544334333 2333221 111 0 1234433322
Q ss_pred -CCCCHHHHHHHHcCCCeEEEEEEe
Q 021567 283 -GVRSDWEQHVIDRGAPMYRLMLSK 306 (311)
Q Consensus 283 -~~~T~yE~~~~~~G~~i~~~~~~k 306 (311)
-....||....+.|..|-+-.+..
T Consensus 145 ~~Ti~DFe~lc~~~~i~I~~~~~~~ 169 (193)
T PF07021_consen 145 LCTIKDFEDLCRELGIRIEERVFLD 169 (193)
T ss_pred cccHHHHHHHHHHCCCEEEEEEEEc
Confidence 234679999999999997766544
No 97
>PLN03075 nicotianamine synthase; Provisional
Probab=99.10 E-value=7.1e-10 Score=103.86 Aligned_cols=103 Identities=11% Similarity=0.115 Sum_probs=74.8
Q ss_pred CCCeEEEEeccccHH--HHHHHhhCCCCeEEEEchHHHHHHHHHH-----cCCC-cEEEEEccccchhhhhhccCCCcEe
Q 021567 125 AQPLVVDIGSGNGLF--LLGMARKRKDLNFLGLELVTHCRDSLQL-----SGIT-NGYFIATNATSTFRSIVASYPGKLI 196 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~--~~~lA~~~p~~~vvGiDi~~~a~~~a~~-----~~~~-Nv~f~~~Da~~ll~~~~~~~~~s~D 196 (311)
...+|+|||||.|.+ ++.++...|+..++|+|+++.+.+.|++ .++. ++.|..+|+.+.. + ..+.||
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~----~-~l~~FD 197 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVT----E-SLKEYD 197 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcc----c-ccCCcC
Confidence 457899999998844 3444556899999999987766655542 3554 5999999998751 1 246799
Q ss_pred EEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 197 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 197 ~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
.|++..--.|-+. ...++++.+++.|+|||.+++.+
T Consensus 198 lVF~~ALi~~dk~-------~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 198 VVFLAALVGMDKE-------EKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred EEEEecccccccc-------cHHHHHHHHHHhcCCCcEEEEec
Confidence 9988732222111 11489999999999999999986
No 98
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.09 E-value=7.4e-10 Score=104.41 Aligned_cols=109 Identities=11% Similarity=0.112 Sum_probs=72.6
Q ss_pred CCeEEEEeccccHHHHHHHhhCC-CCeEEEEchHHHHHHHHHHc---CC--CcEEEEEccccchhhhhhccC-CCcEeEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTHCRDSLQLS---GI--TNGYFIATNATSTFRSIVASY-PGKLILV 198 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~~~a~~~a~~~---~~--~Nv~f~~~Da~~ll~~~~~~~-~~s~D~V 198 (311)
+..|||+|||||..+..|++..+ ..+|+|+|+|+.+++.+.++ .. -++.++++|..+.++- .+.. +.....+
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~-~~~~~~~~~~~~ 142 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLAL-PPEPAAGRRLGF 142 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhh-hcccccCCeEEE
Confidence 56899999999999999999876 58999999988776665432 12 2577899998774321 1101 1122233
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 241 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~ 241 (311)
++..+..++.. .....+|++++++|+|||.|++..|.
T Consensus 143 ~~gs~~~~~~~------~e~~~~L~~i~~~L~pgG~~lig~d~ 179 (301)
T TIGR03438 143 FPGSTIGNFTP------EEAVAFLRRIRQLLGPGGGLLIGVDL 179 (301)
T ss_pred EecccccCCCH------HHHHHHHHHHHHhcCCCCEEEEeccC
Confidence 32222222211 11248999999999999999986653
No 99
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.08 E-value=1.5e-09 Score=96.78 Aligned_cols=98 Identities=12% Similarity=0.096 Sum_probs=73.2
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
....|||||||+|.++..+++..|..+++|+|+++.+++.+++. ..++.+.++|+.+. + ++++||.|+++..-
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~-~~~~~~~~~d~~~~----~--~~~sfD~V~~~~vL 115 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAY-LPNINIIQGSLFDP----F--KDNFFDLVLTKGVL 115 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhh-CCCCcEEEeeccCC----C--CCCCEEEEEECChh
Confidence 35679999999999999999988889999999999999988654 35788889987652 2 57899999876432
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
.+.. + -....+++++.|++ ++.+++
T Consensus 116 ~hl~-p-----~~~~~~l~el~r~~--~~~v~i 140 (204)
T TIGR03587 116 IHIN-P-----DNLPTAYRELYRCS--NRYILI 140 (204)
T ss_pred hhCC-H-----HHHHHHHHHHHhhc--CcEEEE
Confidence 1110 0 01147889999987 445555
No 100
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.08 E-value=2.1e-10 Score=104.46 Aligned_cols=104 Identities=18% Similarity=0.242 Sum_probs=75.6
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcC----C--C----cEEEEEccccchhhhhhccCCCcE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG----I--T----NGYFIATNATSTFRSIVASYPGKL 195 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~----~--~----Nv~f~~~Da~~ll~~~~~~~~~s~ 195 (311)
+..|||+|||+|-++..||+. +++|+|||.++.+.+.|+.+. . . .+++.+.|++.. .+.|
T Consensus 90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~--------~~~f 159 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL--------TGKF 159 (282)
T ss_pred CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc--------cccc
Confidence 467999999999999999998 589999998877776665431 0 1 266777777765 3448
Q ss_pred eEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHH
Q 021567 196 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLR 247 (311)
Q Consensus 196 D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~ 247 (311)
|.|+..-.- +|-+ .-++|++.+.+.|||||.+++.|-++....+
T Consensus 160 DaVvcsevl------eHV~--dp~~~l~~l~~~lkP~G~lfittinrt~lS~ 203 (282)
T KOG1270|consen 160 DAVVCSEVL------EHVK--DPQEFLNCLSALLKPNGRLFITTINRTILSF 203 (282)
T ss_pred ceeeeHHHH------HHHh--CHHHHHHHHHHHhCCCCceEeeehhhhHHHh
Confidence 999765211 1100 0159999999999999999999876654433
No 101
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.08 E-value=7.3e-10 Score=107.85 Aligned_cols=100 Identities=17% Similarity=0.113 Sum_probs=73.6
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCC-CcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
++.+|||||||+|.++..+|+.. +.+++|+|+++.+++.++++.. .++++..+|..++ +++||.|+....
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l--------~~~fD~Ivs~~~ 237 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL--------NGQFDRIVSVGM 237 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc--------CCCCCEEEEeCc
Confidence 46799999999999999999875 5799999999888777754321 2578888886543 467898875422
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
-.+.... ..+.+++++.++|||||.+++.+
T Consensus 238 ~ehvg~~------~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 238 FEHVGPK------NYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred hhhCChH------HHHHHHHHHHHHcCCCcEEEEEE
Confidence 1111000 11488999999999999999864
No 102
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.07 E-value=1.2e-09 Score=97.33 Aligned_cols=124 Identities=19% Similarity=0.219 Sum_probs=91.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC-
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP- 203 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp- 203 (311)
....|||||||||..+..|... +..++|+|+|..+++.+.+..+. -.++.+|.-.- +|+.+++||.+++.-.
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~e~e-gdlil~DMG~G----lpfrpGtFDg~ISISAv 122 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVERELE-GDLILCDMGEG----LPFRPGTFDGVISISAV 122 (270)
T ss_pred CCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHhhhh-cCeeeeecCCC----CCCCCCccceEEEeeee
Confidence 4679999999999999999865 57899999999998888765443 45777776543 4678999998864321
Q ss_pred ----CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe--CcHHHHHHHHHHHHhcCC
Q 021567 204 ----NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS--DIEEVMLRMKQQFLEYGK 257 (311)
Q Consensus 204 ----dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t--D~~~~~~~~~~~l~~~g~ 257 (311)
+......++++|+ ..|+..++.+|++|++.+++. .+....+.+..+....||
T Consensus 123 QWLcnA~~s~~~P~~Rl--~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF 180 (270)
T KOG1541|consen 123 QWLCNADKSLHVPKKRL--LRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGF 180 (270)
T ss_pred eeecccCccccChHHHH--HHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhcc
Confidence 2222334567777 489999999999999998874 445556666666666664
No 103
>PRK06202 hypothetical protein; Provisional
Probab=99.06 E-value=1.6e-09 Score=97.91 Aligned_cols=100 Identities=13% Similarity=0.084 Sum_probs=72.9
Q ss_pred CCCeEEEEeccccHHHHHHHhh----CCCCeEEEEchHHHHHHHHHHcC-CCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK----RKDLNFLGLELVTHCRDSLQLSG-ITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~----~p~~~vvGiDi~~~a~~~a~~~~-~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
...+|||||||+|.++..|++. .|+.+++|+|+++.+++.+++.. ..++.+...++..+ +..++++|.|+
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l-----~~~~~~fD~V~ 134 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDEL-----VAEGERFDVVT 134 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccc-----cccCCCccEEE
Confidence 4578999999999999998863 45679999999999988886542 34678888777665 33578999998
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
+++.-.++.+. ....++++++++++ |.+++
T Consensus 135 ~~~~lhh~~d~------~~~~~l~~~~r~~~--~~~~i 164 (232)
T PRK06202 135 SNHFLHHLDDA------EVVRLLADSAALAR--RLVLH 164 (232)
T ss_pred ECCeeecCChH------HHHHHHHHHHHhcC--eeEEE
Confidence 87643332211 11479999999998 44444
No 104
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.06 E-value=9e-10 Score=96.94 Aligned_cols=106 Identities=11% Similarity=0.173 Sum_probs=74.7
Q ss_pred cCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH--cCCCcEEEEEccccchhhhhhccCCCcEeEE
Q 021567 121 YHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL--SGITNGYFIATNATSTFRSIVASYPGKLILV 198 (311)
Q Consensus 121 f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~--~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V 198 (311)
.+++....+||+|||.|.++..||.+. ..++++|+++.|++.+++ .+.+||+++++|+... . +++.||+|
T Consensus 39 Lp~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~----~--P~~~FDLI 110 (201)
T PF05401_consen 39 LPRRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGLPHVEWIQADVPEF----W--PEGRFDLI 110 (201)
T ss_dssp HTTSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---------SS-EEEE
T ss_pred cCccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC----C--CCCCeeEE
Confidence 344345789999999999999999995 589999999999998875 3568999999998665 2 48999999
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
++.-.--+..... .-..+++.+...|+|||.+++.+
T Consensus 111 V~SEVlYYL~~~~-----~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 111 VLSEVLYYLDDAE-----DLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp EEES-GGGSSSHH-----HHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEehHhHcCCCHH-----HHHHHHHHHHHHhCCCCEEEEEE
Confidence 8762221111111 11478899999999999999975
No 105
>PLN02366 spermidine synthase
Probab=99.06 E-value=2.9e-09 Score=100.70 Aligned_cols=124 Identities=15% Similarity=0.131 Sum_probs=90.9
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc------C--CCcEEEEEccccchhhhhhccCCCcEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS------G--ITNGYFIATNATSTFRSIVASYPGKLI 196 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~------~--~~Nv~f~~~Da~~ll~~~~~~~~~s~D 196 (311)
+..+||+||||.|..+..+++..+..+++.+|+.+...+.+++. + -++++++.+|+...+... +++.+|
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~---~~~~yD 167 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNA---PEGTYD 167 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhc---cCCCCC
Confidence 45789999999999999998764346899999866555544331 2 247999999998875431 357899
Q ss_pred EEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc----HHHHHHHHHHHHhc
Q 021567 197 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEY 255 (311)
Q Consensus 197 ~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~----~~~~~~~~~~l~~~ 255 (311)
+|++..++|+.. ...+..++|++.++++|+|||.+..+..+ ......+.+.+.+.
T Consensus 168 vIi~D~~dp~~~----~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~ 226 (308)
T PLN02366 168 AIIVDSSDPVGP----AQELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRET 226 (308)
T ss_pred EEEEcCCCCCCc----hhhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHH
Confidence 999998888632 23466789999999999999999886554 33344455555554
No 106
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.05 E-value=3.3e-10 Score=102.01 Aligned_cols=147 Identities=13% Similarity=0.160 Sum_probs=95.8
Q ss_pred hhhhhhhhhhccCCC----chhhhhhCCCchhhHhhcCCCCC--CeEEEEeccccHHHHHHHhhCCC--CeEEEEchHHH
Q 021567 89 GSAVWEFLKGRMLPG----VSALDRAFPFDIDWSAAYHDPAQ--PLVVDIGSGNGLFLLGMARKRKD--LNFLGLELVTH 160 (311)
Q Consensus 89 ~a~~wd~~~~r~~~~----~~~l~~~~~~~~~~~~~f~~~~~--~~vLDIGcGtG~~~~~lA~~~p~--~~vvGiDi~~~ 160 (311)
.+.+||.+...+..- .+.+++.+ .+.++-.+. ..|||||||.|.....+.+..|+ ..+.+.|.|..
T Consensus 35 ~~k~wD~fy~~~~~rFfkdR~wL~~Ef------pel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~ 108 (264)
T KOG2361|consen 35 ASKYWDTFYKIHENRFFKDRNWLLREF------PELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPR 108 (264)
T ss_pred hhhhhhhhhhhccccccchhHHHHHhh------HHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChH
Confidence 678899888765542 23333333 333322122 27999999999999999998777 89999999999
Q ss_pred HHHHHHHcCC---CcEEEEEccccchh-hhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEE
Q 021567 161 CRDSLQLSGI---TNGYFIATNATSTF-RSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF 236 (311)
Q Consensus 161 a~~~a~~~~~---~Nv~f~~~Da~~ll-~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~ 236 (311)
|++..+++.. +++.-...|+..-- .. +...+++|.+++.|.-.- -|.. + .+..++.++++|||||.++
T Consensus 109 Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~--~~~~~svD~it~IFvLSA---i~pe-k--~~~a~~nl~~llKPGG~ll 180 (264)
T KOG2361|consen 109 AIELVKKSSGYDESRVEAFVWDLTSPSLKE--PPEEGSVDIITLIFVLSA---IHPE-K--MQSVIKNLRTLLKPGGSLL 180 (264)
T ss_pred HHHHHHhccccchhhhcccceeccchhccC--CCCcCccceEEEEEEEec---cChH-H--HHHHHHHHHHHhCCCcEEE
Confidence 9999876543 23444444443321 11 335789999987763111 1110 0 1478999999999999999
Q ss_pred EEeCcHHHHHHHHHHHH
Q 021567 237 LQSDIEEVMLRMKQQFL 253 (311)
Q Consensus 237 ~~tD~~~~~~~~~~~l~ 253 (311)
+. | |...-+.+++
T Consensus 181 fr-D---Yg~~DlaqlR 193 (264)
T KOG2361|consen 181 FR-D---YGRYDLAQLR 193 (264)
T ss_pred Ee-e---cccchHHHHh
Confidence 96 3 4444444443
No 107
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.05 E-value=2.4e-09 Score=81.29 Aligned_cols=99 Identities=16% Similarity=0.169 Sum_probs=75.5
Q ss_pred eEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 128 LVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 128 ~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
+++|+|||+|.++..+++ .+..+++++|+++.+.+.++ .....++.++.+|..+... ...+.+|.|+++.+
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~d~i~~~~~ 75 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP----EADESFDVIISDPP 75 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc----ccCCceEEEEEccc
Confidence 489999999999999998 56789999998776665554 2344679999999887621 13578999988865
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
..++ ......+++.+.+.|+|||.+++.
T Consensus 76 ~~~~-------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 76 LHHL-------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eeeh-------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 4331 012358899999999999999875
No 108
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.04 E-value=2.8e-09 Score=98.93 Aligned_cols=122 Identities=12% Similarity=0.100 Sum_probs=88.6
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc--------CCCcEEEEEccccchhhhhhccCCCcEeE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--------GITNGYFIATNATSTFRSIVASYPGKLIL 197 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~--------~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~ 197 (311)
..+|||||||+|.++..+++..+..+++++|+++...+.+++. ..++++++.+|+...+.. .++.+|+
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~----~~~~yDv 148 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLAD----TENTFDV 148 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHh----CCCCccE
Confidence 4589999999999999998876667899999876655554431 124688999999877542 3678999
Q ss_pred EEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHH----HHHHHHHHHHhc
Q 021567 198 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE----VMLRMKQQFLEY 255 (311)
Q Consensus 198 V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~----~~~~~~~~l~~~ 255 (311)
|++..++|... ...+...++++.++++|+|||.+++.+.+.. +...+.+.+.+.
T Consensus 149 Ii~D~~~~~~~----~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~ 206 (270)
T TIGR00417 149 IIVDSTDPVGP----AETLFTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEA 206 (270)
T ss_pred EEEeCCCCCCc----ccchhHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHH
Confidence 99988777522 2234557999999999999999998765433 333334445443
No 109
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.03 E-value=3.3e-09 Score=104.84 Aligned_cols=114 Identities=16% Similarity=0.301 Sum_probs=81.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhC-CCCeEEEEchHHH----HHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~-p~~~vvGiDi~~~----a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||+|||+|..+..+|+.. +...++++|+++. +.+++++.|++|+.++++|+..+.. ..+..+++||.|+
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~-~~~~~~~~fD~Vl 330 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLE-LKPQWRGYFDRIL 330 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccc-ccccccccCCEEE
Confidence 46799999999999999999874 4569999998654 4455566788899999999987621 1112357899998
Q ss_pred EeCCC----CCCCCchhhhh--------h--hHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCPN----PDFNRPEHRWR--------M--VQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fpd----P~~k~~h~krR--------l--~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+.-|- -+.+.+..+++ + .+.++|+++.+.|||||.++.+|
T Consensus 331 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvyst 384 (434)
T PRK14901 331 LDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYAT 384 (434)
T ss_pred EeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 86441 11111111111 1 14789999999999999998775
No 110
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.03 E-value=2.9e-09 Score=94.01 Aligned_cols=100 Identities=13% Similarity=0.184 Sum_probs=70.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
+..++||||||.|..++.||++ +..|+++|.+..+++++. +.+++ ++....|+.+. . .+..+|.|+.
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~-i~~~~~Dl~~~-----~-~~~~yD~I~s 100 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLD-IRTRVADLNDF-----D-FPEEYDFIVS 100 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-T-EEEEE-BGCCB-----S--TTTEEEEEE
T ss_pred CCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCce-eEEEEecchhc-----c-ccCCcCEEEE
Confidence 3578999999999999999999 789999999877666543 34554 89999998775 2 2568999875
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
...-... .|-..+.+++.+...++|||++.+.+
T Consensus 101 t~v~~fL------~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 101 TVVFMFL------QRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp ESSGGGS-------GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEeccC------CHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 3221111 11223689999999999999988753
No 111
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.03 E-value=2.4e-09 Score=99.11 Aligned_cols=110 Identities=14% Similarity=0.151 Sum_probs=78.9
Q ss_pred CCCeEEEEeccccHHHHHHHhhCC-CCeEEEEchHHHH----HHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTHC----RDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~~~a----~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||+|||+|..+..+|+... ...++++|++..+ .+++++.++.|+.+++.|+..+ +...+.||.|+
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~-----~~~~~~fD~Vl 145 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVF-----GAAVPKFDAIL 145 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHh-----hhhccCCCEEE
Confidence 467899999999999999998754 4689999986544 4555567888999999998765 11245699998
Q ss_pred EeCCC---------CCCCCchhhhhh-----hHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCPN---------PDFNRPEHRWRM-----VQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fpd---------P~~k~~h~krRl-----~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+.-|- |..+.....+.+ .+.++|+.+.+.|||||+++.+|
T Consensus 146 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst 199 (264)
T TIGR00446 146 LDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST 199 (264)
T ss_pred EcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 86331 111100111111 23679999999999999999886
No 112
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=2.9e-09 Score=99.64 Aligned_cols=129 Identities=13% Similarity=0.205 Sum_probs=90.6
Q ss_pred chhhHhhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHH----HHHHcCCCc-EEEEEccccchhhhhh
Q 021567 114 DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGITN-GYFIATNATSTFRSIV 188 (311)
Q Consensus 114 ~~~~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~----~a~~~~~~N-v~f~~~Da~~ll~~~~ 188 (311)
-+.|.+.+.. ++.++||+|||+|.++++.++.. ...++|+|+.+.|.+ +++.++... +.....+....
T Consensus 152 cL~~Le~~~~-~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~----- 224 (300)
T COG2264 152 CLEALEKLLK-KGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEV----- 224 (300)
T ss_pred HHHHHHHhhc-CCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhh-----
Confidence 3456666655 57899999999999999999875 357999998665554 444555543 22222222221
Q ss_pred ccCCCcEeEEEEeC-CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceee
Q 021567 189 ASYPGKLILVSIQC-PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 189 ~~~~~s~D~V~i~f-pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~ 262 (311)
+ ..+.+|+|+.|- .+| -..+...+.+.|||||.++++---.++.+...+.+.+.|+.....
T Consensus 225 ~-~~~~~DvIVANILA~v------------l~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~ 286 (300)
T COG2264 225 P-ENGPFDVIVANILAEV------------LVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEV 286 (300)
T ss_pred c-ccCcccEEEehhhHHH------------HHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEE
Confidence 1 246899998873 222 148889999999999999998766777777788888888875543
No 113
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.01 E-value=7.2e-10 Score=97.78 Aligned_cols=111 Identities=17% Similarity=0.180 Sum_probs=79.0
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHH----HHHHHHHHcCCCcEE-EEEccccchhhhhhccCCCcEeEEEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT----HCRDSLQLSGITNGY-FIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~----~a~~~a~~~~~~Nv~-f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
...+||+|||||.....+-- -|...++++|-++ .+.++++++...++. |+.++++++ ++ .+++++|.|+-
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~-~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l-~~---l~d~s~DtVV~ 151 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPW-KPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENL-PQ---LADGSYDTVVC 151 (252)
T ss_pred ccceEEecccCCCCcccccC-CCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcC-cc---cccCCeeeEEE
Confidence 45689999999998766543 3678999999654 455556566566777 999999998 22 36999999853
Q ss_pred e---CC--CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc---HHHHHHHHHHHHh
Q 021567 201 Q---CP--NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI---EEVMLRMKQQFLE 254 (311)
Q Consensus 201 ~---fp--dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~---~~~~~~~~~~l~~ 254 (311)
. |+ || .+.|+++.|+|+|||+++|--.. ..+...+.++..+
T Consensus 152 TlvLCSve~~-------------~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~e 200 (252)
T KOG4300|consen 152 TLVLCSVEDP-------------VKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAE 200 (252)
T ss_pred EEEEeccCCH-------------HHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhc
Confidence 3 22 33 37899999999999999985322 2344555555444
No 114
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.01 E-value=3.5e-09 Score=94.43 Aligned_cols=95 Identities=15% Similarity=0.184 Sum_probs=72.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHH----HHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~----~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
.+.+|||||||+|.++..+++.. .+++++|.++.+. +++++.++.|+.+..+|+...+ + ..+.||.|++
T Consensus 78 ~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~-~~~~fD~I~~ 150 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGW----P-AYAPFDRILV 150 (212)
T ss_pred CCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCC----C-cCCCcCEEEE
Confidence 46799999999999999888874 4799999765444 4444567888999999986541 1 2478999998
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeC
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 240 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD 240 (311)
..+.+ .+.+.+.+.|+|||.+++...
T Consensus 151 ~~~~~--------------~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 151 TAAAP--------------EIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred ccCch--------------hhhHHHHHhcCCCcEEEEEEc
Confidence 75422 334567899999999998754
No 115
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.00 E-value=2e-08 Score=98.17 Aligned_cols=132 Identities=12% Similarity=0.120 Sum_probs=87.6
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCC--cEEEEEccccchhhhhhccCCCcEeEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGIT--NGYFIATNATSTFRSIVASYPGKLILV 198 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~--Nv~f~~~Da~~ll~~~~~~~~~s~D~V 198 (311)
.+.+|||+|||+|.+++.++.. ....++++|+++.+++.+ +.++++ +++++++|+.+.+... ......||.|
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~-~~~~~~fDlV 297 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTY-RDRGEKFDVI 297 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHH-HhcCCCCCEE
Confidence 3578999999999999887754 345899999876665544 445664 7999999999876432 1124689999
Q ss_pred EEeCCCCCCCCc-hhhhhhh--HHHHHHHHHhcccCCeEEEEEeCc-----HHHHHHHHHHHHhcCCCce
Q 021567 199 SIQCPNPDFNRP-EHRWRMV--QRSLVEAVSDLLVHDGKVFLQSDI-----EEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 199 ~i~fpdP~~k~~-h~krRl~--~~~~l~~i~rvLkpGG~l~~~tD~-----~~~~~~~~~~l~~~g~~~~ 260 (311)
+++ .|.+... ....... ..+++....++|+|||.++..|-+ +.+.+.+.+...+.+....
T Consensus 298 ilD--PP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~ 365 (396)
T PRK15128 298 VMD--PPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQ 365 (396)
T ss_pred EEC--CCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEE
Confidence 987 2323221 1111111 256777889999999999976532 3344444555566665433
No 116
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.00 E-value=3e-09 Score=105.39 Aligned_cols=111 Identities=17% Similarity=0.163 Sum_probs=80.2
Q ss_pred CCCeEEEEeccccHHHHHHHhhC-CCCeEEEEchHHHH----HHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHC----RDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~-p~~~vvGiDi~~~a----~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++..|||+|||+|..++.+++.. ++..++|+|+++.+ .+++++.|++|+.++++|+..+.. .+ +++||.|+
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~-~~---~~~fD~Vl 325 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHE-KF---AEKFDKIL 325 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccc-hh---cccCCEEE
Confidence 45789999999999999999875 67899999986554 445556688889999999987622 12 36899998
Q ss_pred EeCCCC------------CCCCchhhhhh--hHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCPNP------------DFNRPEHRWRM--VQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fpdP------------~~k~~h~krRl--~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+.-|-. |.+....-.++ .+.++|+.+.++|||||.++.+|
T Consensus 326 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst 379 (444)
T PRK14902 326 VDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST 379 (444)
T ss_pred EcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 874411 11111111111 23578999999999999999765
No 117
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.00 E-value=3.6e-09 Score=96.34 Aligned_cols=101 Identities=16% Similarity=0.202 Sum_probs=77.5
Q ss_pred CCeEEEEeccccHHHHHHHhhCC-CCeEEEEchHHH----HHHHHHHcCC-CcEEEEEccccchhhhhhcc-CCCcEeEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTH----CRDSLQLSGI-TNGYFIATNATSTFRSIVAS-YPGKLILV 198 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~~~----a~~~a~~~~~-~Nv~f~~~Da~~ll~~~~~~-~~~s~D~V 198 (311)
..+|||||||+|..++.+|...| +.+++++|+++. |.+++++.++ ++++++.+|+.+.++.+.+. ++++||.|
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~V 148 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFA 148 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEE
Confidence 57899999999999999998754 789999998654 4445555676 46999999999886654321 24689999
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
++.-..+ ....+++.+.+.|+|||.+++
T Consensus 149 fiDa~k~-----------~y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 149 FVDADKP-----------NYVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred EECCCHH-----------HHHHHHHHHHHhcCCCeEEEE
Confidence 8863211 125789999999999999886
No 118
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.00 E-value=3.5e-09 Score=100.75 Aligned_cols=97 Identities=16% Similarity=0.178 Sum_probs=73.2
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCC-CeEEEEchHHH----HHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKD-LNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~-~~vvGiDi~~~----a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||||||+|.++..+|+..+. ..++|+|+++. |.++++..+.+|+.++++|+..... ....+|.|+
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~-----~~~~fD~Ii 154 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVP-----EFAPYDVIF 154 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccc-----ccCCccEEE
Confidence 4579999999999999999998653 57999998665 4445555678899999999876521 246799998
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeC
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 240 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD 240 (311)
+.+.-+ ...+.+.+.|+|||.+++..+
T Consensus 155 ~~~g~~--------------~ip~~~~~~LkpgG~Lvv~~~ 181 (322)
T PRK13943 155 VTVGVD--------------EVPETWFTQLKEGGRVIVPIN 181 (322)
T ss_pred ECCchH--------------HhHHHHHHhcCCCCEEEEEeC
Confidence 864322 234456789999999988654
No 119
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.99 E-value=4.8e-09 Score=103.47 Aligned_cols=111 Identities=15% Similarity=0.168 Sum_probs=79.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++..|||+|||+|..+..+++..++..++|+|+++.+++.+ ++.++ ++.++++|+.++ ...+ .+++||.|++
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~-~~~~~~~D~~~~-~~~~--~~~~fD~Vl~ 319 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL-KATVIVGDARDP-AQWW--DGQPFDRILL 319 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEcCcccc-hhhc--ccCCCCEEEE
Confidence 46799999999999999999988778999999876555444 44555 478999999875 2112 3568999988
Q ss_pred eCCCC------------CCCCchhhhh--hhHHHHHHHHHhcccCCeEEEEEe
Q 021567 201 QCPNP------------DFNRPEHRWR--MVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 201 ~fpdP------------~~k~~h~krR--l~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+-|-. |.+......+ ..+.++++.+.+.|||||.++++|
T Consensus 320 D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst 372 (427)
T PRK10901 320 DAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT 372 (427)
T ss_pred CCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 74421 1001000001 124689999999999999999876
No 120
>PLN02672 methionine S-methyltransferase
Probab=98.98 E-value=6.2e-09 Score=111.79 Aligned_cols=127 Identities=15% Similarity=0.126 Sum_probs=90.7
Q ss_pred CeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCC----------------CcEEEEEccccchhhh
Q 021567 127 PLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGI----------------TNGYFIATNATSTFRS 186 (311)
Q Consensus 127 ~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~----------------~Nv~f~~~Da~~ll~~ 186 (311)
.+|||||||+|.+++.+|+++|+.+++|+|++..|++.++ .+++ ++++|+++|+.+.+
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~-- 197 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC-- 197 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc--
Confidence 5899999999999999999999899999999877665553 3221 36999999987652
Q ss_pred hhccCCCcEeEEEEeCCCCCCCCch-------h--------------hhhh-----------hHHHHHHHHHhcccCCeE
Q 021567 187 IVASYPGKLILVSIQCPNPDFNRPE-------H--------------RWRM-----------VQRSLVEAVSDLLVHDGK 234 (311)
Q Consensus 187 ~~~~~~~s~D~V~i~fpdP~~k~~h-------~--------------krRl-----------~~~~~l~~i~rvLkpGG~ 234 (311)
+.....||+|+.|=| ...... - .--+ +.++++++..++|+|||.
T Consensus 198 --~~~~~~fDlIVSNPP--YI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~ 273 (1082)
T PLN02672 198 --RDNNIELDRIVGCIP--QILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGI 273 (1082)
T ss_pred --cccCCceEEEEECCC--cCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCE
Confidence 111236999988732 221100 0 0011 116788899999999999
Q ss_pred EEEEeCcHHHHHHHH-HHHHhcCCCce
Q 021567 235 VFLQSDIEEVMLRMK-QQFLEYGKGKL 260 (311)
Q Consensus 235 l~~~tD~~~~~~~~~-~~l~~~g~~~~ 260 (311)
+++..+.. ..+.+. +.+++.|+...
T Consensus 274 l~lEiG~~-q~~~v~~~l~~~~gf~~~ 299 (1082)
T PLN02672 274 MIFNMGGR-PGQAVCERLFERRGFRIT 299 (1082)
T ss_pred EEEEECcc-HHHHHHHHHHHHCCCCee
Confidence 99998754 566777 58888887654
No 121
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.95 E-value=6.4e-09 Score=93.13 Aligned_cols=147 Identities=13% Similarity=0.078 Sum_probs=92.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH----cCC-CcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGI-TNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~----~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
...++||||||+|.++..+++. +..++|+|+++.++..+++ .+. .++.|.++|+.++ ++++|.|+
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--------~~~fD~ii 124 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL--------CGEFDIVV 124 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC--------CCCcCEEE
Confidence 3678999999999999999986 4689999998777666543 333 4799999998765 26799887
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceeeeccccccccCCCCCCCC
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGE 279 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~~~d~y~~~~~~~~~~~~ 279 (311)
....-.++... ....+++++.+++++++.+.+..-. .+. .....+.+. +.. .. . ...
T Consensus 125 ~~~~l~~~~~~------~~~~~l~~i~~~~~~~~~i~~~~~~-~~~-~~~~~~~~~-~~~--~~-~-----------~~~ 181 (219)
T TIGR02021 125 CMDVLIHYPAS------DMAKALGHLASLTKERVIFTFAPKT-AWL-AFLKMIGEL-FPG--SS-R-----------ATS 181 (219)
T ss_pred EhhHHHhCCHH------HHHHHHHHHHHHhCCCEEEEECCCc-hHH-HHHHHHHhh-CcC--cc-c-----------ccc
Confidence 64221111000 1147889999999988777764322 221 112222221 100 00 0 000
Q ss_pred CCCCCCCHHHHHHHHcCCCeEEEEE
Q 021567 280 NSFGVRSDWEQHVIDRGAPMYRLML 304 (311)
Q Consensus 280 ~~~~~~T~yE~~~~~~G~~i~~~~~ 304 (311)
.....+++++..+.+.|..+.....
T Consensus 182 ~~~~~~~~~~~~l~~~Gf~v~~~~~ 206 (219)
T TIGR02021 182 AYLHPMTDLERALGELGWKIVREGL 206 (219)
T ss_pred eEEecHHHHHHHHHHcCceeeeeec
Confidence 1113467899999999988877663
No 122
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.95 E-value=7.7e-09 Score=102.57 Aligned_cols=109 Identities=17% Similarity=0.090 Sum_probs=79.0
Q ss_pred CCCeEEEEeccccHHHHHHHhhC-CCCeEEEEchHHHHH----HHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHCR----DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~-p~~~vvGiDi~~~a~----~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++..|||+|||+|..+..+++.. +...++|+|+++.++ +++++.|++|+.++++|+..+ + ++.+||.|+
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~-----~-~~~~fD~Vl 323 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSF-----S-PEEQPDAIL 323 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccc-----c-cCCCCCEEE
Confidence 46799999999999999999864 356999999876544 455566788999999999876 1 356899998
Q ss_pred EeCCC---------C---CCCCchhhhhh--hHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCPN---------P---DFNRPEHRWRM--VQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fpd---------P---~~k~~h~krRl--~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+.-|. | |......-.++ .+..+|..+++.|+|||+++++|
T Consensus 324 ~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvyst 377 (445)
T PRK14904 324 LDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYAT 377 (445)
T ss_pred EcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 76331 1 11010000011 23579999999999999999987
No 123
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.93 E-value=3.9e-09 Score=94.61 Aligned_cols=96 Identities=18% Similarity=0.235 Sum_probs=71.1
Q ss_pred CCCeEEEEeccccHHHHHHHhh-CCCCeEEEEch----HHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEL----VTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~-~p~~~vvGiDi----~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||||||+|.++.-||.. .+...+++||. .+.|.++++..+..|+.++++|...-++ ..+.||.|+
T Consensus 72 pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~-----~~apfD~I~ 146 (209)
T PF01135_consen 72 PGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWP-----EEAPFDRII 146 (209)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTG-----GG-SEEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccc-----cCCCcCEEE
Confidence 4789999999999999999987 45567999995 4566777777788999999999877532 256899999
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+...-+. .-..+.+.|++||++++-.
T Consensus 147 v~~a~~~--------------ip~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 147 VTAAVPE--------------IPEALLEQLKPGGRLVAPI 172 (209)
T ss_dssp ESSBBSS----------------HHHHHTEEEEEEEEEEE
T ss_pred Eeeccch--------------HHHHHHHhcCCCcEEEEEE
Confidence 9865431 2234567799999999854
No 124
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.93 E-value=6e-09 Score=102.95 Aligned_cols=111 Identities=14% Similarity=0.130 Sum_probs=80.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhC-CCCeEEEEchHHHHH----HHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHCR----DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~-p~~~vvGiDi~~~a~----~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||+|||+|..+..+|+.. +..+++++|+++..+ +++++.|++|+.++++|+..+ .. ..+++||.|+
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l-~~---~~~~~fD~Vl 312 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERL-TE---YVQDTFDRIL 312 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhh-hh---hhhccCCEEE
Confidence 46789999999999999999874 567999999876544 445566888899999999876 21 1256899998
Q ss_pred EeCCCC----CCCCchhhhh--------h--hHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCPNP----DFNRPEHRWR--------M--VQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fpdP----~~k~~h~krR--------l--~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+.-|.- +.+.+..+++ + .+.++|+.+.+.|||||.++.+|
T Consensus 313 ~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT 366 (431)
T PRK14903 313 VDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYST 366 (431)
T ss_pred ECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 864431 0011111111 1 34688999999999999999876
No 125
>PHA03412 putative methyltransferase; Provisional
Probab=98.93 E-value=8.4e-09 Score=93.65 Aligned_cols=100 Identities=15% Similarity=0.138 Sum_probs=74.5
Q ss_pred CCeEEEEeccccHHHHHHHhhC---CCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 126 QPLVVDIGSGNGLFLLGMARKR---KDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~---p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
+.+|||+|||+|.+++.++++. +..+++|+|+.+.|.+.++++ ..++.++++|+... + .+++||.|+.|
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n-~~~~~~~~~D~~~~-----~-~~~~FDlIIsN- 121 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRI-VPEATWINADALTT-----E-FDTLFDMAISN- 121 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhh-ccCCEEEEcchhcc-----c-ccCCccEEEEC-
Confidence 5799999999999999999864 367999999999999888754 45789999998754 2 25689999998
Q ss_pred CCCCCCC--chhhhh----hhHHHHHHHHHhcccCCeE
Q 021567 203 PNPDFNR--PEHRWR----MVQRSLVEAVSDLLVHDGK 234 (311)
Q Consensus 203 pdP~~k~--~h~krR----l~~~~~l~~i~rvLkpGG~ 234 (311)
.|..+. .+.+.| .+...+++.+.+++++|+.
T Consensus 122 -PPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 122 -PPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred -CCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 333321 111112 3346789999997777775
No 126
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.92 E-value=2.1e-08 Score=89.59 Aligned_cols=103 Identities=17% Similarity=0.186 Sum_probs=74.4
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
+.+|||||||+|.++..+++.. ..++|+|.+..+++.++ ..+..++.+..+|+.+... ..++.+|.|++.
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~~D~i~~~ 119 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAE----KGAKSFDVVTCM 119 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhc----CCCCCccEEEeh
Confidence 5689999999999999998864 46999998765555443 3444479999999887621 124789999875
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcH
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE 242 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~ 242 (311)
..-.+... ...+++++.++|+|||.+++.+.+.
T Consensus 120 ~~l~~~~~--------~~~~l~~~~~~L~~gG~l~i~~~~~ 152 (224)
T TIGR01983 120 EVLEHVPD--------PQAFIRACAQLLKPGGILFFSTINR 152 (224)
T ss_pred hHHHhCCC--------HHHHHHHHHHhcCCCcEEEEEecCC
Confidence 32111111 1478999999999999999876443
No 127
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.92 E-value=3.3e-08 Score=93.82 Aligned_cols=148 Identities=13% Similarity=0.080 Sum_probs=83.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc---------CCCcEEEEEccccchhhhhhccCCCcE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS---------GITNGYFIATNATSTFRSIVASYPGKL 195 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~---------~~~Nv~f~~~Da~~ll~~~~~~~~~s~ 195 (311)
++.+|||||||+|.+++.+++. +.+++|+|+++.+++.++++ +..++.|..+|+.++ +++|
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l--------~~~f 213 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL--------SGKY 213 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--------CCCc
Confidence 3579999999999999999986 57999999988776665432 124688888887543 4678
Q ss_pred eEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceeeeccccccccCCCC
Q 021567 196 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGG 275 (311)
Q Consensus 196 D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~~~d~y~~~~~~~~ 275 (311)
|.|++...-.++... ....+++.+.+ +.+||. ++..........+.+.+.+. +... ..
T Consensus 214 D~Vv~~~vL~H~p~~------~~~~ll~~l~~-l~~g~l-iIs~~p~~~~~~~l~~~g~~-~~g~-------------~~ 271 (315)
T PLN02585 214 DTVTCLDVLIHYPQD------KADGMIAHLAS-LAEKRL-IISFAPKTLYYDILKRIGEL-FPGP-------------SK 271 (315)
T ss_pred CEEEEcCEEEecCHH------HHHHHHHHHHh-hcCCEE-EEEeCCcchHHHHHHHHHhh-cCCC-------------Cc
Confidence 887643211110000 01256666665 455555 44332222222222222211 1000 00
Q ss_pred CCCCCCCCCCCHHHHHHHHcCCCeEEEEEE
Q 021567 276 WLGENSFGVRSDWEQHVIDRGAPMYRLMLS 305 (311)
Q Consensus 276 ~~~~~~~~~~T~yE~~~~~~G~~i~~~~~~ 305 (311)
+ ...-.....++++.+.+.|..+.+...+
T Consensus 272 ~-~r~y~~s~eel~~lL~~AGf~v~~~~~~ 300 (315)
T PLN02585 272 A-TRAYLHAEADVERALKKAGWKVARREMT 300 (315)
T ss_pred C-ceeeeCCHHHHHHHHHHCCCEEEEEEEe
Confidence 0 0000123567888999999888765544
No 128
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.92 E-value=1.1e-08 Score=96.20 Aligned_cols=125 Identities=18% Similarity=0.285 Sum_probs=82.6
Q ss_pred hhHhhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchH----HHHHHHHHHcCCCcEEEEEccccchhhhhhccC
Q 021567 116 DWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV----THCRDSLQLSGITNGYFIATNATSTFRSIVASY 191 (311)
Q Consensus 116 ~~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~----~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~ 191 (311)
.+.+.+.. ++.+|||+|||||-+++..++... .+++|+|+. +.|.++++.+++.+ .+......+. .
T Consensus 153 ~~l~~~~~-~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~~~-~~~v~~~~~~-------~ 222 (295)
T PF06325_consen 153 ELLEKYVK-PGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGVED-RIEVSLSEDL-------V 222 (295)
T ss_dssp HHHHHHSS-TTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT-TT-CEEESCTSCT-------C
T ss_pred HHHHHhcc-CCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCCCe-eEEEEEeccc-------c
Confidence 44444443 467999999999999999998753 589999974 45666666777755 3322222222 3
Q ss_pred CCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceee
Q 021567 192 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 192 ~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~ 262 (311)
.+.+|+|+.|.-.+ +-..++..+.+.|+|||.++++---....+.+.+.+.+ |+.....
T Consensus 223 ~~~~dlvvANI~~~-----------vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~ 281 (295)
T PF06325_consen 223 EGKFDLVVANILAD-----------VLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEE 281 (295)
T ss_dssp CS-EEEEEEES-HH-----------HHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEE
T ss_pred cccCCEEEECCCHH-----------HHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEE
Confidence 58999999883211 11467788899999999999975444556677777765 7765433
No 129
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.92 E-value=1.5e-08 Score=100.50 Aligned_cols=122 Identities=20% Similarity=0.222 Sum_probs=88.2
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++..|||+|||+|.+++.+|+.. ..++|+|+++.|++.+ +.++++|+.|+++|+.+.+.. .+..+.++|.|++
T Consensus 297 ~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~-~~~~~~~fD~Vi~ 373 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTD-QPWALGGFDKVLL 373 (443)
T ss_pred CCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhh-hhhhcCCCCEEEE
Confidence 45789999999999999999884 6899999877665554 445778999999999875422 1123567999987
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceee
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~ 262 (311)
+ .|. .. . .+.++.+.+ ++|++.+|+++|...++..... |.+.||....+
T Consensus 374 d--PPr--~g------~-~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~-L~~~gY~l~~i 422 (443)
T PRK13168 374 D--PPR--AG------A-AEVMQALAK-LGPKRIVYVSCNPATLARDAGV-LVEAGYRLKRA 422 (443)
T ss_pred C--cCC--cC------h-HHHHHHHHh-cCCCeEEEEEeChHHhhccHHH-HhhCCcEEEEE
Confidence 6 232 11 1 255666666 6999999999988777766664 45667765544
No 130
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.92 E-value=1.1e-08 Score=92.67 Aligned_cols=100 Identities=10% Similarity=0.047 Sum_probs=74.9
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH-cC---------------CCcEEEEEccccchhhhhh
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL-SG---------------ITNGYFIATNATSTFRSIV 188 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~-~~---------------~~Nv~f~~~Da~~ll~~~~ 188 (311)
.+.+||..|||.|.-+..||++ +..|+|+|+|+.|++.+.+ ++ -.+++++++|..++-..
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~-- 118 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI-- 118 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcc--
Confidence 4579999999999999999998 6789999999999988744 11 23789999999887110
Q ss_pred ccCCCcEeEEEE-----eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 189 ASYPGKLILVSI-----QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 189 ~~~~~s~D~V~i-----~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+...+.||.|+- .+| | -.+.++.+.+.++|+|||.+++.+
T Consensus 119 ~~~~~~fD~VyDra~~~Alp-p----------~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 119 ANNLPVFDIWYDRGAYIALP-N----------DLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred ccccCCcCeeeeehhHhcCC-H----------HHHHHHHHHHHHHhCCCcEEEEEE
Confidence 011256888752 222 2 123589999999999999988765
No 131
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.91 E-value=1.2e-08 Score=106.53 Aligned_cols=129 Identities=11% Similarity=0.162 Sum_probs=91.1
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCCC--cEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGIT--NGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~~--Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
+.+|||+|||||.+++.+|+.. ...|+++|+++.|++.++ .++++ +++++++|+.+.+.. ...+||.|+
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~G-a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~----~~~~fDlIi 613 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGG-AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKE----AREQFDLIF 613 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHH----cCCCcCEEE
Confidence 5789999999999999999863 347999999876665554 45664 799999999886542 256899999
Q ss_pred EeCCCCCCCC-ch--hhhhh--hHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceee
Q 021567 200 IQCPNPDFNR-PE--HRWRM--VQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 200 i~fpdP~~k~-~h--~krRl--~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~ 262 (311)
++- |.+.. +. ..... ...++++.+.++|+|||.+++.++...+. ...+.+.+.|+....+
T Consensus 614 lDP--P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~-~~~~~~~~~g~~~~~i 678 (702)
T PRK11783 614 IDP--PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFK-MDEEGLAKLGLKAEEI 678 (702)
T ss_pred ECC--CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCC-hhHHHHHhCCCeEEEE
Confidence 872 22211 11 00000 12578889999999999999988665433 3466777777765544
No 132
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.90 E-value=1.4e-08 Score=90.69 Aligned_cols=101 Identities=19% Similarity=0.214 Sum_probs=78.3
Q ss_pred CCeEEEEeccccHHHHHHHhhCC-CCeEEEEchHH----HHHHHHHHcCC-CcEEEEEccccchhhhhhccC-CCcEeEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVT----HCRDSLQLSGI-TNGYFIATNATSTFRSIVASY-PGKLILV 198 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~~----~a~~~a~~~~~-~Nv~f~~~Da~~ll~~~~~~~-~~s~D~V 198 (311)
..+||||||++|..++.+|+..| +.+++.+|..+ .|.+.+++.|+ ++++++.+|+.+.++.+.+.. .+.||.|
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~V 125 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFV 125 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEE
T ss_pred CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEE
Confidence 47899999999999999999876 68999999754 45555566676 479999999999877654322 3689999
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
++.-. +. -+..+++.+.+.|+|||.+++
T Consensus 126 FiDa~-----K~------~y~~y~~~~~~ll~~ggvii~ 153 (205)
T PF01596_consen 126 FIDAD-----KR------NYLEYFEKALPLLRPGGVIIA 153 (205)
T ss_dssp EEEST-----GG------GHHHHHHHHHHHEEEEEEEEE
T ss_pred EEccc-----cc------chhhHHHHHhhhccCCeEEEE
Confidence 98731 11 235889999999999999987
No 133
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.89 E-value=2.6e-08 Score=98.33 Aligned_cols=122 Identities=19% Similarity=0.266 Sum_probs=85.9
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHH----HHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~----~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++.+|||+|||+|.+++.+|+.. ..++|+|+++.+.+ +++.++++|++|+++|+.+.+... +..+.++|.|++
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~-~~~~~~~D~vi~ 368 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQ-PWAGQIPDVLLL 368 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHH-HhcCCCCCEEEE
Confidence 35789999999999999999874 58999998665554 444567889999999998764432 123467899987
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCcee
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV 261 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~ 261 (311)
.- | ... ....+++.+.+ |+|++.+++++|-..+.. -++.+.+.||....
T Consensus 369 dP--P--r~G------~~~~~l~~l~~-l~~~~ivyvsc~p~tlar-d~~~l~~~gy~~~~ 417 (431)
T TIGR00479 369 DP--P--RKG------CAAEVLRTIIE-LKPERIVYVSCNPATLAR-DLEFLCKEGYGITW 417 (431)
T ss_pred Cc--C--CCC------CCHHHHHHHHh-cCCCEEEEEcCCHHHHHH-HHHHHHHCCeeEEE
Confidence 52 2 111 22577777665 899999999877554444 34456677775443
No 134
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.86 E-value=2.6e-08 Score=94.42 Aligned_cols=115 Identities=18% Similarity=0.173 Sum_probs=81.6
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHH----HHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDS----LQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~----a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
+.+|||+|||+|.+++.+|+. ...++|+|+++.+++. ++.++++|++|+++|+.++... .++.+|.|+++
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~----~~~~~D~Vv~d 247 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA----QGEVPDLVLVN 247 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh----cCCCCeEEEEC
Confidence 478999999999999999985 5799999987655544 4456788899999999876321 24579999887
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCce
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~ 260 (311)
.| +.. ..+..++.+. .++|++.+|+++|...+.+..... .||...
T Consensus 248 --PP--r~G------~~~~~~~~l~-~~~~~~ivyvsc~p~t~~rd~~~l---~~y~~~ 292 (315)
T PRK03522 248 --PP--RRG------IGKELCDYLS-QMAPRFILYSSCNAQTMAKDLAHL---PGYRIE 292 (315)
T ss_pred --CC--CCC------ccHHHHHHHH-HcCCCeEEEEECCcccchhHHhhc---cCcEEE
Confidence 22 111 1124444443 378999999998877776666543 455543
No 135
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.85 E-value=6.3e-08 Score=85.25 Aligned_cols=154 Identities=11% Similarity=0.077 Sum_probs=94.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
.+..|||||||+|.++..+++.. ...++|+|+++.+++.++.. ++.++++|+.+.+. +.+++++|.|+++.+-
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~~---~~~~~~~d~~~~l~---~~~~~sfD~Vi~~~~l 85 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVAR---GVNVIQGDLDEGLE---AFPDKSFDYVILSQTL 85 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHHc---CCeEEEEEhhhccc---ccCCCCcCEEEEhhHh
Confidence 35689999999999999998763 56789999998888877653 57889999876321 2357899999887543
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceeeeccccccccCCCCCCCCC--CC
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGEN--SF 282 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~~~d~y~~~~~~~~~~~~~--~~ 282 (311)
.+..+ ...+++++.|++++ +++..-+..+.......+ ..+... .... + ...|.... .+
T Consensus 86 ~~~~d--------~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~-~~~~~~--~~~~-~-----~~~~~~~~~~~~ 145 (194)
T TIGR02081 86 QATRN--------PEEILDEMLRVGRH---AIVSFPNFGYWRVRWSIL-TKGRMP--VTGE-L-----PYDWYNTPNIHF 145 (194)
T ss_pred HcCcC--------HHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHH-hCCccc--cCCC-C-----CccccCCCCccc
Confidence 22211 14778888887654 344443443433222222 121111 1100 0 00121111 23
Q ss_pred CCCCHHHHHHHHcCCCeEEEEEE
Q 021567 283 GVRSDWEQHVIDRGAPMYRLMLS 305 (311)
Q Consensus 283 ~~~T~yE~~~~~~G~~i~~~~~~ 305 (311)
....++.+.+.+.|..+-...+.
T Consensus 146 ~s~~~~~~ll~~~Gf~v~~~~~~ 168 (194)
T TIGR02081 146 CTIADFEDLCGELNLRILDRAAF 168 (194)
T ss_pred CcHHHHHHHHHHCCCEEEEEEEe
Confidence 34566789999999999877665
No 136
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.85 E-value=4.2e-08 Score=87.26 Aligned_cols=102 Identities=17% Similarity=0.174 Sum_probs=72.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHH----HHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~----~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
.+.++||+|||+|.+++.++.+. ..+++++|.++.+.+ +++..++.|+.++++|+.+.+.. ...++|.|++
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~----~~~~fDlV~~ 127 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQ----PGTPHNVVFV 127 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhh----cCCCceEEEE
Confidence 35689999999999999765554 368999998765554 44455777899999999876421 2456999987
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHh--cccCCeEEEEEeC
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSD--LLVHDGKVFLQSD 240 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~r--vLkpGG~l~~~tD 240 (311)
+ .|+ ... ..+..++.+.. +|+|+|.+++.+.
T Consensus 128 D--PPy-~~g------~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 128 D--PPF-RKG------LLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred C--CCC-CCC------hHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 7 333 221 22455665554 4899999999864
No 137
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.84 E-value=2.9e-08 Score=89.25 Aligned_cols=99 Identities=20% Similarity=0.215 Sum_probs=80.6
Q ss_pred CCCeEEEEeccccHHHHHHHhhCC-CCeEEEEchH----HHHHHHHHHcCCCc-EEEEE-ccccchhhhhhccCCCcEeE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELV----THCRDSLQLSGITN-GYFIA-TNATSTFRSIVASYPGKLIL 197 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~----~~a~~~a~~~~~~N-v~f~~-~Da~~ll~~~~~~~~~s~D~ 197 (311)
...++||||++.|..++.||...| +.+++.+|.. +.|.+..++.|..+ +.++. +|+.+.+.. ...++||.
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~---~~~~~fDl 135 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSR---LLDGSFDL 135 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHh---ccCCCccE
Confidence 357899999999999999999988 8899999975 45666666778766 88888 699988654 24799999
Q ss_pred EEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 198 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 198 V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
|++..- + -.++.+++.+.++|+|||.+++
T Consensus 136 iFIDad-----K------~~yp~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 136 VFIDAD-----K------ADYPEYLERALPLLRPGGLIVA 164 (219)
T ss_pred EEEeCC-----h------hhCHHHHHHHHHHhCCCcEEEE
Confidence 988621 1 1237999999999999999986
No 138
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.84 E-value=3e-08 Score=85.48 Aligned_cols=97 Identities=14% Similarity=0.136 Sum_probs=70.2
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc--CCCcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--GITNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~--~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
++..+||||||+|.++..++++ ..+++|+|++..+.+.++++ +.+|++++++|+.++ +.++..+|.|+.+.
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~-----~~~~~~~d~vi~n~ 85 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKF-----DLPKLQPYKVVGNL 85 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcC-----CccccCCCEEEECC
Confidence 3568999999999999999988 57899999988777776543 245899999999887 22345689998874
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhc--ccCCeEEEEEe
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDL--LVHDGKVFLQS 239 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rv--LkpGG~l~~~t 239 (311)
|-. +...++..+.+. +.++|.++++.
T Consensus 86 Py~-----------~~~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 86 PYN-----------ISTPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred Ccc-----------cHHHHHHHHHhcCCCcceEEEEEEH
Confidence 421 112444444332 45889988864
No 139
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=3.5e-08 Score=85.54 Aligned_cols=127 Identities=16% Similarity=0.166 Sum_probs=94.2
Q ss_pred CCeEEEEeccccHHHHHHHhh-CCCCeEEEEchHHHHHHH----HHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTHCRDS----LQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~-~p~~~vvGiDi~~~a~~~----a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
..+++|||||+|..+..|++. .|+..+++.|++..|.+. |+.++ -++..+++|...-+ ..+++|++.+
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~-~~~~~V~tdl~~~l------~~~~VDvLvf 116 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR-VHIDVVRTDLLSGL------RNESVDVLVF 116 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC-CccceeehhHHhhh------ccCCccEEEE
Confidence 578999999999999999987 688999999998776554 33333 35788999977653 2589999988
Q ss_pred eCCCCCCCCch--------------hhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCce
Q 021567 201 QCPNPDFNRPE--------------HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 201 ~fpdP~~k~~h--------------~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~ 260 (311)
|=| -.|.... .--|-+..+++.++-.+|.|.|.+|+.+-..+.-+++++.++..|+...
T Consensus 117 NPP-YVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~ 189 (209)
T KOG3191|consen 117 NPP-YVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGVR 189 (209)
T ss_pred CCC-cCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhccccee
Confidence 722 1111100 0114455789999999999999999987666667788888888887654
No 140
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=2.2e-08 Score=89.09 Aligned_cols=94 Identities=19% Similarity=0.277 Sum_probs=74.0
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchH----HHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV----THCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~----~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++..|||||||+|..+.-||+.- .+|+.+|.. +.|.++.+..|+.||.+.++|...-++ +...||.|++
T Consensus 72 ~g~~VLEIGtGsGY~aAvla~l~--~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~-----~~aPyD~I~V 144 (209)
T COG2518 72 PGDRVLEIGTGSGYQAAVLARLV--GRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWP-----EEAPYDRIIV 144 (209)
T ss_pred CCCeEEEECCCchHHHHHHHHHh--CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCC-----CCCCcCEEEE
Confidence 57899999999999999999984 399999964 457777778899999999999987532 3578999988
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
...-|. .-+.+.+.|++||++++-.
T Consensus 145 taaa~~--------------vP~~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 145 TAAAPE--------------VPEALLDQLKPGGRLVIPV 169 (209)
T ss_pred eeccCC--------------CCHHHHHhcccCCEEEEEE
Confidence 754332 1123456799999999864
No 141
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.84 E-value=4.9e-08 Score=94.80 Aligned_cols=117 Identities=18% Similarity=0.195 Sum_probs=85.7
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHH----HHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDS----LQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~----a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
+.++||+|||+|.+++.+|.. ...++|+|++..|++. ++.++++|+.|+++|+.+.+.. ....+|.|+++
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~----~~~~~D~vi~D 307 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATA----QMSAPELVLVN 307 (374)
T ss_pred CCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHh----cCCCCCEEEEC
Confidence 468999999999999999965 4689999987665554 4456778999999999876432 12458998876
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceee
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~ 262 (311)
.|. . -..+.+++.+.+ ++|++.+|++.|-..++...... .||....+
T Consensus 308 --PPr--~------G~~~~~l~~l~~-~~p~~ivyvsc~p~TlaRDl~~L---~gy~l~~~ 354 (374)
T TIGR02085 308 --PPR--R------GIGKELCDYLSQ-MAPKFILYSSCNAQTMAKDIAEL---SGYQIERV 354 (374)
T ss_pred --CCC--C------CCcHHHHHHHHh-cCCCeEEEEEeCHHHHHHHHHHh---cCceEEEE
Confidence 232 1 123466777754 79999999999888777777755 56765443
No 142
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.80 E-value=5e-08 Score=96.24 Aligned_cols=112 Identities=14% Similarity=0.245 Sum_probs=75.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHH----HHHHHcCCC-cEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~----~~a~~~~~~-Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
.+.+|||+|||+|..+..+|+..++..++|+|++...+ +++++.|++ ++.+..+|+... .... .+++||.|+
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~-~~~~--~~~~fD~Vl 314 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGP-SQWA--ENEQFDRIL 314 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccc-cccc--cccccCEEE
Confidence 46799999999999999999987778999999876544 444555665 244466776543 1111 356899998
Q ss_pred EeCC---------CCCCC---Cchhhhhh--hHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCP---------NPDFN---RPEHRWRM--VQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fp---------dP~~k---~~h~krRl--~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+.-| .|..+ ..+.-.++ .+.++|+++.++|||||.++.+|
T Consensus 315 lDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvyst 368 (426)
T TIGR00563 315 LDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYAT 368 (426)
T ss_pred EcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 7522 11111 11110111 24689999999999999999875
No 143
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.80 E-value=9.4e-09 Score=92.69 Aligned_cols=106 Identities=14% Similarity=0.175 Sum_probs=72.1
Q ss_pred chhhH-hhcCCCCC-CeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEE-------EEccccchh
Q 021567 114 DIDWS-AAYHDPAQ-PLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYF-------IATNATSTF 184 (311)
Q Consensus 114 ~~~~~-~~f~~~~~-~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f-------~~~Da~~ll 184 (311)
+.+|- ..+...++ ..++|+|||+|..++.+|..+ .+|+|+|+++.+++.+++. .|+.. ...+..++
T Consensus 20 Ptdw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~--k~VIatD~s~~mL~~a~k~--~~~~y~~t~~~ms~~~~v~L- 94 (261)
T KOG3010|consen 20 PTDWFKKIASRTEGHRLAWDVGTGNGQAARGIAEHY--KEVIATDVSEAMLKVAKKH--PPVTYCHTPSTMSSDEMVDL- 94 (261)
T ss_pred cHHHHHHHHhhCCCcceEEEeccCCCcchHHHHHhh--hhheeecCCHHHHHHhhcC--CCcccccCCccccccccccc-
Confidence 34553 33333233 389999999998888888875 4799999999999988654 22222 22232333
Q ss_pred hhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCe-EEEE
Q 021567 185 RSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDG-KVFL 237 (311)
Q Consensus 185 ~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG-~l~~ 237 (311)
...++|+|+|+.--.-.||.- ++|.++++|+||+.| .+.+
T Consensus 95 ----~g~e~SVDlI~~Aqa~HWFdl---------e~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 95 ----LGGEESVDLITAAQAVHWFDL---------ERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred ----cCCCcceeeehhhhhHHhhch---------HHHHHHHHHHcCCCCCEEEE
Confidence 114899999986545556432 699999999999876 5554
No 144
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.79 E-value=4.3e-08 Score=88.41 Aligned_cols=101 Identities=24% Similarity=0.310 Sum_probs=73.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH----cCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~----~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
.+..|||||||+|.++..+++. ..+++|+|+++.+++.+++ .+. ++.+..+|+.+... ..++.+|.|++
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~fD~Ii~ 120 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAA----EHPGQFDVVTC 120 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhh----hcCCCccEEEE
Confidence 3568999999999999999886 4689999987666555543 233 67888888876621 13578999977
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeC
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 240 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD 240 (311)
...-.+..+ ...+++.+.+.|+|||.+++.+.
T Consensus 121 ~~~l~~~~~--------~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 121 MEMLEHVPD--------PASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred hhHhhccCC--------HHHHHHHHHHHcCCCcEEEEEec
Confidence 532221111 14789999999999999998753
No 145
>PLN02476 O-methyltransferase
Probab=98.77 E-value=6.7e-08 Score=90.03 Aligned_cols=102 Identities=13% Similarity=0.177 Sum_probs=78.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhCC-CCeEEEEchHH----HHHHHHHHcCCC-cEEEEEccccchhhhhhcc-CCCcEeE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVT----HCRDSLQLSGIT-NGYFIATNATSTFRSIVAS-YPGKLIL 197 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~~----~a~~~a~~~~~~-Nv~f~~~Da~~ll~~~~~~-~~~s~D~ 197 (311)
...+|||||||+|..++.+|...| +..++.+|..+ .|.+.+++.|+. +++++.+|+.+.++.+... .+++||.
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~ 197 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDF 197 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence 357899999999999999998754 67899999754 455555667775 7999999999987653211 2468999
Q ss_pred EEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 198 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 198 V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
|++. .+ +. -...+++.+.+.|+|||.+++
T Consensus 198 VFID---a~--K~------~Y~~y~e~~l~lL~~GGvIV~ 226 (278)
T PLN02476 198 AFVD---AD--KR------MYQDYFELLLQLVRVGGVIVM 226 (278)
T ss_pred EEEC---CC--HH------HHHHHHHHHHHhcCCCcEEEE
Confidence 9775 32 11 236899999999999999886
No 146
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.74 E-value=9e-08 Score=89.51 Aligned_cols=114 Identities=16% Similarity=0.210 Sum_probs=73.1
Q ss_pred hhCCCchhhHhh---cCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHH------HHHHHHHHcCCCc-EEEEEc
Q 021567 109 RAFPFDIDWSAA---YHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT------HCRDSLQLSGITN-GYFIAT 178 (311)
Q Consensus 109 ~~~~~~~~~~~~---f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~------~a~~~a~~~~~~N-v~f~~~ 178 (311)
..|.-...|... .++-.+.+|||||||+|.++.+|+.+.| ..|+|+|-+. .++++. .+.++ +.++-.
T Consensus 96 tEWrSd~KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~lf~~QF~~i~~~--lg~~~~~~~lpl 172 (315)
T PF08003_consen 96 TEWRSDWKWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSPLFYLQFEAIKHF--LGQDPPVFELPL 172 (315)
T ss_pred ccccccchHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCChHHHHHHHHHHHH--hCCCccEEEcCc
Confidence 334334455433 2233678999999999999999999865 5799999532 223322 22233 444434
Q ss_pred cccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 179 NATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 179 Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
-++++ |. .+.||.|++.-.--+. +++ -..|.++++.|+|||.+++.|
T Consensus 173 gvE~L-----p~-~~~FDtVF~MGVLYHr--r~P------l~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 173 GVEDL-----PN-LGAFDTVFSMGVLYHR--RSP------LDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred chhhc-----cc-cCCcCEEEEeeehhcc--CCH------HHHHHHHHHhhCCCCEEEEEE
Confidence 55554 43 6789999754221110 000 278999999999999999976
No 147
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.73 E-value=1.1e-07 Score=85.21 Aligned_cols=96 Identities=14% Similarity=0.147 Sum_probs=64.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH----cCC-CcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGI-TNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~----~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
+...|||||||+|.++..+++.. ..++|+|+++.+++.+++ .+. +++.+..+|... .+++||.|+
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--------~~~~fD~v~ 132 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES--------LLGRFDTVV 132 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh--------ccCCcCEEE
Confidence 45789999999999999999874 469999987766665543 344 478999998322 257899997
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEE
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF 236 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~ 236 (311)
....-.++... .....++.+.+.+++++.+.
T Consensus 133 ~~~~l~~~~~~------~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 133 CLDVLIHYPQE------DAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred EcchhhcCCHH------HHHHHHHHHHhhcCCeEEEE
Confidence 65322111110 11367788888776555444
No 148
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=1.5e-07 Score=82.21 Aligned_cols=117 Identities=15% Similarity=0.187 Sum_probs=80.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH---cCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL---SGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~---~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
++..|+|+|||||.+++..+-..| ..|+|+|+...|++.+++ ....++.|+.+|+.++ ++.+|.+.+|
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~--------~~~~dtvimN 115 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDF--------RGKFDTVIMN 115 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhc--------CCccceEEEC
Confidence 567899999999999999998765 689999986555544432 2456899999999886 5677877777
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCce
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~ 260 (311)
+||=.. +|..+..|+....+.- .++-+.....+.+++.....+.|....
T Consensus 116 --PPFG~~----~rhaDr~Fl~~Ale~s----~vVYsiH~a~~~~f~~~~~~~~G~~v~ 164 (198)
T COG2263 116 --PPFGSQ----RRHADRPFLLKALEIS----DVVYSIHKAGSRDFVEKFAADLGGTVT 164 (198)
T ss_pred --CCCccc----cccCCHHHHHHHHHhh----heEEEeeccccHHHHHHHHHhcCCeEE
Confidence 454221 3335567777666553 222223344466677778888886544
No 149
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.72 E-value=4.5e-08 Score=88.27 Aligned_cols=99 Identities=17% Similarity=0.248 Sum_probs=72.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH-HcCC---------------CcEEEEEccccchhhhhh
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ-LSGI---------------TNGYFIATNATSTFRSIV 188 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~-~~~~---------------~Nv~f~~~Da~~ll~~~~ 188 (311)
.+.+||..|||.|.-+..||++ +.+|+|+|+|+.|++.+. +++. .+|.+.++|..++-.
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~--- 111 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPP--- 111 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGG---
T ss_pred CCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCCh---
Confidence 4568999999999999999998 679999999999999873 2221 357899999988621
Q ss_pred ccCCCcEeEEEEe---CC-CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 189 ASYPGKLILVSIQ---CP-NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 189 ~~~~~s~D~V~i~---fp-dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
...+.||.|+=. +. +|. .++++.+.++++|+|||.+.+.|
T Consensus 112 -~~~g~fD~iyDr~~l~Alpp~----------~R~~Ya~~l~~ll~p~g~~lLi~ 155 (218)
T PF05724_consen 112 -EDVGKFDLIYDRTFLCALPPE----------MRERYAQQLASLLKPGGRGLLIT 155 (218)
T ss_dssp -SCHHSEEEEEECSSTTTS-GG----------GHHHHHHHHHHCEEEEEEEEEEE
T ss_pred -hhcCCceEEEEecccccCCHH----------HHHHHHHHHHHHhCCCCcEEEEE
Confidence 123579999622 21 221 23699999999999999955543
No 150
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.69 E-value=4.6e-07 Score=86.18 Aligned_cols=165 Identities=15% Similarity=0.166 Sum_probs=97.5
Q ss_pred hhhhhhhhhhccCCCch---hhhhhCCCchhhH-----hhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHH
Q 021567 89 GSAVWEFLKGRMLPGVS---ALDRAFPFDIDWS-----AAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH 160 (311)
Q Consensus 89 ~a~~wd~~~~r~~~~~~---~l~~~~~~~~~~~-----~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~ 160 (311)
.-..||.-.+++-|... .+... ..++. ...+.....++||||||+|.+...++.+.++.+++|+|+++.
T Consensus 73 gl~~wdip~~~LcPpiP~R~~Yi~~---l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~ 149 (321)
T PRK11727 73 GVAHWDIPAGYLCPPIPGRADYIHH---LADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQ 149 (321)
T ss_pred CCCcccCCCCCcCCCCCcHHHHHHH---HHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHH
Confidence 56678888888777651 11110 01111 011111357899999999999999998888999999999766
Q ss_pred HHHHH----HHc-CCC-cEEEEE-ccccchhhhhhccCCCcEeEEEEeCCCCCCCCchh-------hhhhhH--------
Q 021567 161 CRDSL----QLS-GIT-NGYFIA-TNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEH-------RWRMVQ-------- 218 (311)
Q Consensus 161 a~~~a----~~~-~~~-Nv~f~~-~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~-------krRl~~-------- 218 (311)
|++.| +.+ ++. ++.+++ .|..+++.... ..++.||.|+.| .|++..... +.|-..
T Consensus 150 Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~-~~~~~fDlivcN--PPf~~s~~ea~~~~~rk~r~~ar~~~~~~~ 226 (321)
T PRK11727 150 ALASAQAIISANPGLNGAIRLRLQKDSKAIFKGII-HKNERFDATLCN--PPFHASAAEARAGSQRKLRNLGLNKDKKKV 226 (321)
T ss_pred HHHHHHHHHHhccCCcCcEEEEEccchhhhhhccc-ccCCceEEEEeC--CCCcCcchhhccchhhHHhhhhccCCCccc
Confidence 55554 445 453 577754 45555433221 135789999988 455443221 101000
Q ss_pred HHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceee
Q 021567 219 RSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 219 ~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~ 262 (311)
-.|-....+++.+||.+.|.. ...++........+|+..-+
T Consensus 227 l~f~g~~~EL~~~GGe~~fi~---~mi~eS~~~~~~~gwftsmv 267 (321)
T PRK11727 227 LNFGGQQAELWCEGGEVAFIK---RMIEESKAFAKQVLWFTSLV 267 (321)
T ss_pred cCCcchhhheeeCCcEeeeeh---HhhHHHHHHHhhCcEEEEEe
Confidence 001123456677999988754 45566666677777764433
No 151
>PLN02823 spermine synthase
Probab=98.68 E-value=3.7e-07 Score=87.40 Aligned_cols=125 Identities=15% Similarity=0.135 Sum_probs=92.2
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc--------CCCcEEEEEccccchhhhhhccCCCcEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--------GITNGYFIATNATSTFRSIVASYPGKLI 196 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~--------~~~Nv~f~~~Da~~ll~~~~~~~~~s~D 196 (311)
+..+||.||+|.|..+..+.+..+..+++.||+.+...+.+++. .-++++++.+|+...+.. .++.+|
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~----~~~~yD 178 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK----RDEKFD 178 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh----CCCCcc
Confidence 34689999999999999998876677899999877766666532 125799999999998642 467899
Q ss_pred EEEEeCCCCCCCCchhhhhhhHHHHHH-HHHhcccCCeEEEEEeCc------HHHHHHHHHHHHhc
Q 021567 197 LVSIQCPNPDFNRPEHRWRMVQRSLVE-AVSDLLVHDGKVFLQSDI------EEVMLRMKQQFLEY 255 (311)
Q Consensus 197 ~V~i~fpdP~~k~~h~krRl~~~~~l~-~i~rvLkpGG~l~~~tD~------~~~~~~~~~~l~~~ 255 (311)
+|++..+||+-... -.++.+.+|++ .+.+.|+|||.+++..-. ......+.+.+.+.
T Consensus 179 vIi~D~~dp~~~~~--~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~v 242 (336)
T PLN02823 179 VIIGDLADPVEGGP--CYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQV 242 (336)
T ss_pred EEEecCCCccccCc--chhhccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHh
Confidence 99999888752211 12356679998 899999999999876422 33344555555554
No 152
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.64 E-value=2.9e-07 Score=84.56 Aligned_cols=124 Identities=12% Similarity=0.090 Sum_probs=78.5
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCc-EEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITN-GYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~N-v~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
...+||+|||+|++++.++...|+..++++|.++.|++-+ ++.++.+ +..++-+.+.-.....+..++.+|.++.
T Consensus 149 ~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvs 228 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVS 228 (328)
T ss_pred cceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEec
Confidence 4589999999999999999999999999999988766554 3445543 5555332221100001224688999988
Q ss_pred eCCCCCCCCch------------hhhhhh--------HHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHH
Q 021567 201 QCPNPDFNRPE------------HRWRMV--------QRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQ 251 (311)
Q Consensus 201 ~fpdP~~k~~h------------~krRl~--------~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~ 251 (311)
| .|..++.. .+-.+. --.+..-+.|.|+|||.+.+.++...-..++...
T Consensus 229 N--PPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~~~~lv~~ 297 (328)
T KOG2904|consen 229 N--PPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKEHSYLVRI 297 (328)
T ss_pred C--CCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecccccCcHHHHH
Confidence 7 33332211 110010 1345667789999999999998743333334433
No 153
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.64 E-value=3.4e-07 Score=84.11 Aligned_cols=101 Identities=18% Similarity=0.215 Sum_probs=78.4
Q ss_pred CCeEEEEeccccHHHHHHHhhC-CCCeEEEEchHH----HHHHHHHHcCC-CcEEEEEccccchhhhhhcc--CCCcEeE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVT----HCRDSLQLSGI-TNGYFIATNATSTFRSIVAS--YPGKLIL 197 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~-p~~~vvGiDi~~----~a~~~a~~~~~-~Nv~f~~~Da~~ll~~~~~~--~~~s~D~ 197 (311)
..+|||||+++|..++.+|+.. ++.+++.+|..+ .|.+..++.|+ ++|+++.+|+.+.++.+.+. .+++||.
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~ 159 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDF 159 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccE
Confidence 5789999999999999999875 478999999754 45555566775 57999999999987664321 1368999
Q ss_pred EEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 198 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 198 V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
|++. -+ |+ .+..+++.+.+.|+|||.+++
T Consensus 160 iFiD---ad------K~--~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 160 IFVD---AD------KD--NYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred EEec---CC------HH--HhHHHHHHHHHhcCCCeEEEE
Confidence 9875 22 11 236889999999999999886
No 154
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.64 E-value=2.3e-07 Score=83.92 Aligned_cols=128 Identities=13% Similarity=0.155 Sum_probs=78.3
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc---------CCC-------------------------
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS---------GIT------------------------- 171 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~---------~~~------------------------- 171 (311)
...+|||||-+|..++.+|+.+-...++|+||....+++|+.+ ...
T Consensus 59 ~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~t 138 (288)
T KOG2899|consen 59 PKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAFT 138 (288)
T ss_pred cceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccccc
Confidence 4689999999999999999998888999999876666665432 011
Q ss_pred -----cEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe-CcHHHH
Q 021567 172 -----NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS-DIEEVM 245 (311)
Q Consensus 172 -----Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t-D~~~~~ 245 (311)
|+.|...+......+++......||.|...-..-|..--|+..=+ .+|+..+++.|.|||+|++.- .|..|.
T Consensus 139 ~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL--~~ff~kis~ll~pgGiLvvEPQpWksY~ 216 (288)
T KOG2899|consen 139 TDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGL--RRFFRKISSLLHPGGILVVEPQPWKSYK 216 (288)
T ss_pred ccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHH--HHHHHHHHHhhCcCcEEEEcCCchHHHH
Confidence 333333222211111111235678887544333343222221111 589999999999999999963 455554
Q ss_pred H--HHHHHHHhc
Q 021567 246 L--RMKQQFLEY 255 (311)
Q Consensus 246 ~--~~~~~l~~~ 255 (311)
. .+.+.+..+
T Consensus 217 kaar~~e~~~~n 228 (288)
T KOG2899|consen 217 KAARRSEKLAAN 228 (288)
T ss_pred HHHHHHHHhhcC
Confidence 3 333444444
No 155
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.64 E-value=2.2e-08 Score=89.77 Aligned_cols=165 Identities=11% Similarity=0.139 Sum_probs=102.2
Q ss_pred ccchhhhhhhhhhhhhhhhhhh-ccCCCchh-hhhhCCCchhhHhhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEE
Q 021567 77 SSSIFGLNMVESGSAVWEFLKG-RMLPGVSA-LDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLG 154 (311)
Q Consensus 77 ~~s~~~~~~fe~~a~~wd~~~~-r~~~~~~~-l~~~~~~~~~~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvG 154 (311)
.+|.++...|+..+..+|.+.- .+.-.... +.+. ........-.++||+|||||-.+..+-.. -...+|
T Consensus 82 pP~aYVe~LFD~~Ae~Fd~~LVdkL~Y~vP~~l~em-------I~~~~~g~F~~~lDLGCGTGL~G~~lR~~--a~~ltG 152 (287)
T COG4976 82 PPSAYVETLFDQYAERFDHILVDKLGYSVPELLAEM-------IGKADLGPFRRMLDLGCGTGLTGEALRDM--ADRLTG 152 (287)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHH-------HHhccCCccceeeecccCcCcccHhHHHH--HhhccC
Confidence 3456777888888888877642 21111110 1111 01111112468999999999999988766 347899
Q ss_pred EchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeE
Q 021567 155 LELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGK 234 (311)
Q Consensus 155 iDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~ 234 (311)
+|+|+++++++.++++-. ++.++|+..+++. ..+..+|+|+.-=.-|..-. + +.++--....|+|||.
T Consensus 153 vDiS~nMl~kA~eKg~YD-~L~~Aea~~Fl~~---~~~er~DLi~AaDVl~YlG~------L--e~~~~~aa~~L~~gGl 220 (287)
T COG4976 153 VDISENMLAKAHEKGLYD-TLYVAEAVLFLED---LTQERFDLIVAADVLPYLGA------L--EGLFAGAAGLLAPGGL 220 (287)
T ss_pred CchhHHHHHHHHhccchH-HHHHHHHHHHhhh---ccCCcccchhhhhHHHhhcc------h--hhHHHHHHHhcCCCce
Confidence 999999999998887522 4556777665432 24678898864311111101 0 4788889999999999
Q ss_pred EEEEeCc------------HHHH---HHHHHHHHhcCCCceee
Q 021567 235 VFLQSDI------------EEVM---LRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 235 l~~~tD~------------~~~~---~~~~~~l~~~g~~~~~~ 262 (311)
|.|++.. ..|+ .++...+...|+..+..
T Consensus 221 faFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~ 263 (287)
T COG4976 221 FAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAI 263 (287)
T ss_pred EEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEe
Confidence 9997521 1221 24556666777765544
No 156
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.63 E-value=1.8e-07 Score=89.45 Aligned_cols=112 Identities=20% Similarity=0.173 Sum_probs=70.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc-----------CC---CcEEEEEccccch-hhhhhc
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS-----------GI---TNGYFIATNATST-FRSIVA 189 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~-----------~~---~Nv~f~~~Da~~l-l~~~~~ 189 (311)
.+..|||||||.|.-+.-..... -..++|+|++..+++.|+++ .. -...|+.+|.... +...++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 46899999999998877777654 46899999976555544321 01 2467888887643 122333
Q ss_pred cCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc
Q 021567 190 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 241 (311)
Q Consensus 190 ~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~ 241 (311)
.....||+|.++|.-... -+... .-+.+|+.++..|+|||+|+..|-+
T Consensus 141 ~~~~~FDvVScQFalHY~--Fese~--~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYA--FESEE--KARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp STTS-EEEEEEES-GGGG--GSSHH--HHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred ccCCCcceeehHHHHHHh--cCCHH--HHHHHHHHHHHhcCCCCEEEEEecC
Confidence 234699999999853221 11111 1157999999999999999987744
No 157
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.62 E-value=5.2e-07 Score=87.32 Aligned_cols=118 Identities=14% Similarity=0.185 Sum_probs=82.5
Q ss_pred CeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHH----HHHHcCCCcEEEEEccccchhhhhhccC-----------
Q 021567 127 PLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGITNGYFIATNATSTFRSIVASY----------- 191 (311)
Q Consensus 127 ~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~----~a~~~~~~Nv~f~~~Da~~ll~~~~~~~----------- 191 (311)
..+||++||+|.+++.+|+.. ..++|+|++..|++ +++.++++|+.|+++|+.+.++......
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~ 285 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLK 285 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccccccccccccc
Confidence 479999999999999999875 48999998766554 4445678899999999998765321100
Q ss_pred CCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCcee
Q 021567 192 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV 261 (311)
Q Consensus 192 ~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~ 261 (311)
...+|.|++. |- ... ..+..++.+.+ |++.+|+++|-..+...+.... + ||....
T Consensus 286 ~~~~D~v~lD---PP-R~G------~~~~~l~~l~~---~~~ivyvSC~p~tlarDl~~L~-~-gY~l~~ 340 (362)
T PRK05031 286 SYNFSTIFVD---PP-RAG------LDDETLKLVQA---YERILYISCNPETLCENLETLS-Q-THKVER 340 (362)
T ss_pred CCCCCEEEEC---CC-CCC------CcHHHHHHHHc---cCCEEEEEeCHHHHHHHHHHHc-C-CcEEEE
Confidence 1247888764 42 222 23466666655 7999999998877776666543 3 665443
No 158
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.60 E-value=6.7e-07 Score=78.89 Aligned_cols=104 Identities=13% Similarity=0.123 Sum_probs=69.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCC-cEEEEEccccchhhhhhccCCCc-EeEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGIT-NGYFIATNATSTFRSIVASYPGK-LILV 198 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~-Nv~f~~~Da~~ll~~~~~~~~~s-~D~V 198 (311)
.+.++||++||+|.+++.++.+.. ..++++|.+..+.+.+ +..+.. +++++++|+...+.... .... +|.|
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~--~~~~~~dvv 125 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLA--KKPTFDNVI 125 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhh--ccCCCceEE
Confidence 357899999999999999999864 4899999876655444 445654 69999999977654321 1233 5555
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHH--HhcccCCeEEEEEeC
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAV--SDLLVHDGKVFLQSD 240 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i--~rvLkpGG~l~~~tD 240 (311)
++ ||.+... .....++.+ ..+|+++|.+++.++
T Consensus 126 ~~---DPPy~~~------~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 126 YL---DPPFFNG------ALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred EE---CcCCCCC------cHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 43 3433221 123445544 347999999998764
No 159
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.57 E-value=6.7e-07 Score=78.21 Aligned_cols=112 Identities=19% Similarity=0.252 Sum_probs=75.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCe---------EEEEchHHHHH----HHHHHcCCC-cEEEEEccccchhhhhhcc
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLN---------FLGLELVTHCR----DSLQLSGIT-NGYFIATNATSTFRSIVAS 190 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~---------vvGiDi~~~a~----~~a~~~~~~-Nv~f~~~Da~~ll~~~~~~ 190 (311)
++..+||--||+|.++++.|...++.. ++|.|++..++ ++++..+.. .+.+.+.|+.++ +.
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l-----~~ 102 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDAREL-----PL 102 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGG-----GG
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhc-----cc
Confidence 357899999999999999988766666 99999865544 455555654 589999999988 33
Q ss_pred CCCcEeEEEEeCCCCCCCCchh--hhhhhHHHHHHHHHhcccCCeEEEEEeCcHHH
Q 021567 191 YPGKLILVSIQCPNPDFNRPEH--RWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV 244 (311)
Q Consensus 191 ~~~s~D~V~i~fpdP~~k~~h~--krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~ 244 (311)
.++++|.|+.+ .||=+.-.. .-+.+.+.+++++.++|++ ..+++.+....+
T Consensus 103 ~~~~~d~Ivtn--PPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~~~~ 155 (179)
T PF01170_consen 103 PDGSVDAIVTN--PPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSNREL 155 (179)
T ss_dssp TTSBSCEEEEE----STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESCCCH
T ss_pred ccCCCCEEEEC--cchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECCHHH
Confidence 57899999999 455332111 1234568999999999999 555555655543
No 160
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.56 E-value=4.6e-07 Score=82.28 Aligned_cols=96 Identities=16% Similarity=0.202 Sum_probs=69.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC-
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP- 203 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp- 203 (311)
....+||||+|+|.++..+++++|+.+++..|+-. .++.+++ .++++++.+|..+- + +. .|++++...
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-v~~~~~~--~~rv~~~~gd~f~~----~---P~-~D~~~l~~vL 168 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPE-VIEQAKE--ADRVEFVPGDFFDP----L---PV-ADVYLLRHVL 168 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HH-HHCCHHH--TTTEEEEES-TTTC----C---SS-ESEEEEESSG
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeeccHh-hhhcccc--ccccccccccHHhh----h---cc-ccceeeehhh
Confidence 35689999999999999999999999999999722 2333333 57899999998632 2 23 899887632
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCC--eEEEEE
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHD--GKVFLQ 238 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpG--G~l~~~ 238 (311)
..|+. -....+|+.+++.|+|| |+|++.
T Consensus 169 h~~~d-------~~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 169 HDWSD-------EDCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp GGS-H-------HHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred hhcch-------HHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 22211 11258999999999999 999985
No 161
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.53 E-value=1.3e-06 Score=84.23 Aligned_cols=111 Identities=14% Similarity=0.189 Sum_probs=79.3
Q ss_pred CeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHH----HHHcCCCcEEEEEccccchhhhhhc---c---C-----
Q 021567 127 PLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDS----LQLSGITNGYFIATNATSTFRSIVA---S---Y----- 191 (311)
Q Consensus 127 ~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~----a~~~~~~Nv~f~~~Da~~ll~~~~~---~---~----- 191 (311)
..+||+|||+|.+++.+|+.. ..++|+|++..|++. ++.++++|++|+++|+.+++..... . .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 276 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLK 276 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccc
Confidence 469999999999999999885 489999987655544 4456788999999999987543110 0 0
Q ss_pred CCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHH
Q 021567 192 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQF 252 (311)
Q Consensus 192 ~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l 252 (311)
...+|.|++ ||- ... ..+.+++.+.+ |++.+|+++|-..++..+....
T Consensus 277 ~~~~d~v~l---DPP-R~G------~~~~~l~~l~~---~~~ivYvsC~p~tlaRDl~~L~ 324 (353)
T TIGR02143 277 SYNCSTIFV---DPP-RAG------LDPDTCKLVQA---YERILYISCNPETLKANLEQLS 324 (353)
T ss_pred cCCCCEEEE---CCC-CCC------CcHHHHHHHHc---CCcEEEEEcCHHHHHHHHHHHh
Confidence 113687766 452 222 22466676654 8999999998888888777644
No 162
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=2.3e-06 Score=78.65 Aligned_cols=125 Identities=17% Similarity=0.188 Sum_probs=98.0
Q ss_pred CCCeEEEEeccccHHHHHHHhh-CCCCeEEEEch----HHHHHHHHHHcCC-CcEEEEEccccchhhhhhccCCCcEeEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEL----VTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILV 198 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~-~p~~~vvGiDi----~~~a~~~a~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V 198 (311)
++.+|+|-|+|+|.++.++|+. .|..+++-.|+ .+.|++..++.++ +|+.+.+-|+-.. -|...+..+|.|
T Consensus 105 PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~---GF~~ks~~aDaV 181 (314)
T KOG2915|consen 105 PGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGS---GFLIKSLKADAV 181 (314)
T ss_pred CCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccC---CccccccccceE
Confidence 5789999999999999999998 78889999996 4566777777776 6899999998664 233346789999
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCe-EEEEEeCcHHHHHHHHHHHHhcCCCceeeecc
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDG-KVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQD 265 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG-~l~~~tD~~~~~~~~~~~l~~~g~~~~~~~~d 265 (311)
++..|.|| ..+-.++.+||.+| +|.--+.+-+.....++.+.+.||-.+..-++
T Consensus 182 FLDlPaPw-------------~AiPha~~~lk~~g~r~csFSPCIEQvqrtce~l~~~gf~~i~~vEv 236 (314)
T KOG2915|consen 182 FLDLPAPW-------------EAIPHAAKILKDEGGRLCSFSPCIEQVQRTCEALRSLGFIEIETVEV 236 (314)
T ss_pred EEcCCChh-------------hhhhhhHHHhhhcCceEEeccHHHHHHHHHHHHHHhCCCceEEEEEe
Confidence 99999999 45556667888766 66555666677778899999999866655433
No 163
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.45 E-value=4.7e-07 Score=77.60 Aligned_cols=73 Identities=10% Similarity=0.023 Sum_probs=55.7
Q ss_pred EEEchHHHHHHHHHHc-------CCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHH
Q 021567 153 LGLELVTHCRDSLQLS-------GITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAV 225 (311)
Q Consensus 153 vGiDi~~~a~~~a~~~-------~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i 225 (311)
+|+|+++.+++.++++ +..|++|+++|++++ |+++++||.|++.|.-.+..++ .++++++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l-----p~~~~~fD~v~~~~~l~~~~d~--------~~~l~ei 67 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL-----PFDDCEFDAVTMGYGLRNVVDR--------LRAMKEM 67 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC-----CCCCCCeeEEEecchhhcCCCH--------HHHHHHH
Confidence 4899888777766421 135799999999987 5568899999987654433221 4889999
Q ss_pred HhcccCCeEEEEE
Q 021567 226 SDLLVHDGKVFLQ 238 (311)
Q Consensus 226 ~rvLkpGG~l~~~ 238 (311)
+|+|||||.|++.
T Consensus 68 ~rvLkpGG~l~i~ 80 (160)
T PLN02232 68 YRVLKPGSRVSIL 80 (160)
T ss_pred HHHcCcCeEEEEE
Confidence 9999999999874
No 164
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.43 E-value=9.2e-07 Score=79.68 Aligned_cols=127 Identities=11% Similarity=0.142 Sum_probs=93.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc----CC--CcEEEEEccccchhhhhhccCCCcEeEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS----GI--TNGYFIATNATSTFRSIVASYPGKLILV 198 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~----~~--~Nv~f~~~Da~~ll~~~~~~~~~s~D~V 198 (311)
.+.+|||-|.|-|.+++..+++. ..+|+-+|..+.-++.+..+ ++ .++.++.+|+.++.++ | .|.+||.|
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rG-A~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~-~--~D~sfDaI 209 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERG-AIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKD-F--DDESFDAI 209 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcC-CcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhc-C--CccccceE
Confidence 47899999999999999999883 23899999655544444322 22 2589999999998663 3 68999998
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcH-------HHHHHHHHHHHhcCCCce
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE-------EVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~-------~~~~~~~~~l~~~g~~~~ 260 (311)
.-. .|.+. ..-++-..+|.++++|+|||||+++-.+.+. +......+.+++.||..+
T Consensus 210 iHD--PPRfS---~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v 273 (287)
T COG2521 210 IHD--PPRFS---LAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVV 273 (287)
T ss_pred eeC--CCccc---hhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceee
Confidence 543 23222 1125667899999999999999999876543 345677888889988744
No 165
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.43 E-value=1.4e-06 Score=81.75 Aligned_cols=124 Identities=18% Similarity=0.199 Sum_probs=79.2
Q ss_pred cCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHH----HHHHHHHc-CC-C----cEEEEEccccch-hhhhhc
Q 021567 121 YHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLS-GI-T----NGYFIATNATST-FRSIVA 189 (311)
Q Consensus 121 f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~----a~~~a~~~-~~-~----Nv~f~~~Da~~l-l~~~~~ 189 (311)
|.. ....++|+|||.|.-++..-+.. -..++|+|+.+. |.++.+.. +. + .+.|+.+|...- +...++
T Consensus 114 y~~-~~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e 191 (389)
T KOG1975|consen 114 YTK-RGDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLE 191 (389)
T ss_pred Hhc-cccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhcc
Confidence 444 46789999999999888876553 347999998654 44433321 11 1 378899887653 233455
Q ss_pred cCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHH
Q 021567 190 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQ 250 (311)
Q Consensus 190 ~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~ 250 (311)
+.+.+||+|..+|.-...=....+- +.+|..+++.|+|||+|+-.+.+.+..-+-++
T Consensus 192 ~~dp~fDivScQF~~HYaFetee~a----r~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr 248 (389)
T KOG1975|consen 192 FKDPRFDIVSCQFAFHYAFETEESA----RIALRNVAKCLKPGGVFIGTIPDSDVIIKRLR 248 (389)
T ss_pred CCCCCcceeeeeeeEeeeeccHHHH----HHHHHHHHhhcCCCcEEEEecCcHHHHHHHHH
Confidence 4556699998887533211111111 46789999999999999887655544333333
No 166
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.43 E-value=2.7e-06 Score=78.06 Aligned_cols=123 Identities=15% Similarity=0.161 Sum_probs=90.9
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc--------CCCcEEEEEccccchhhhhhccCCC-cE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--------GITNGYFIATNATSTFRSIVASYPG-KL 195 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~--------~~~Nv~f~~~Da~~ll~~~~~~~~~-s~ 195 (311)
+..+||=||-|.|..+..+.+..+..+++.||+.+...+.+++. .-++++++.+|+...+.. ... .+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~----~~~~~y 151 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKE----TQEEKY 151 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHT----SSST-E
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHh----ccCCcc
Confidence 46899999999999999999876678999999876655555431 135899999999998754 244 89
Q ss_pred eEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc----HHHHHHHHHHHHhc
Q 021567 196 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEY 255 (311)
Q Consensus 196 D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~----~~~~~~~~~~l~~~ 255 (311)
|.|++..+||.-.... +...+|++.+.++|+|||.+.+...+ ......+.+.+.+.
T Consensus 152 DvIi~D~~dp~~~~~~----l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~ 211 (246)
T PF01564_consen 152 DVIIVDLTDPDGPAPN----LFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSV 211 (246)
T ss_dssp EEEEEESSSTTSCGGG----GSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTT
T ss_pred cEEEEeCCCCCCCccc----ccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHh
Confidence 9999998887533222 66789999999999999999987532 34445556666655
No 167
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.43 E-value=1.1e-06 Score=83.39 Aligned_cols=97 Identities=15% Similarity=0.210 Sum_probs=72.6
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchH---HHHHHHHHHcCCCc-EEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV---THCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~---~~a~~~a~~~~~~N-v~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
.+.+|||+|||||.+++--|+.. ..+|+|||.+ ..|.+.++.+++++ ++++++.++++ .+ |...+|.|..
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi---~L--P~eKVDiIvS 133 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDI---EL--PVEKVDIIVS 133 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEE---ec--CccceeEEee
Confidence 36899999999999999999887 5799999964 55667777888877 89999999998 23 3688999865
Q ss_pred eCCCCCCCCchhhhhhhH----HHHHHHHHhcccCCeEEE
Q 021567 201 QCPNPDFNRPEHRWRMVQ----RSLVEAVSDLLVHDGKVF 236 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~----~~~l~~i~rvLkpGG~l~ 236 (311)
-+.--+ ++. ...|-.--+.|+|||.++
T Consensus 134 EWMGy~---------Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 134 EWMGYF---------LLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hhhhHH---------HHHhhhhhhhhhhhhhccCCCceEc
Confidence 422111 111 244445568899999876
No 168
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.40 E-value=1.1e-06 Score=78.23 Aligned_cols=95 Identities=22% Similarity=0.321 Sum_probs=68.2
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHH----HHHHHcCCCc-EEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~----~~a~~~~~~N-v~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++..|+|..||-|.|++.+|+..+...|+++|+.+.|. ++++.+++++ +..+++|+.++. ....+|.|.
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~------~~~~~drvi 174 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL------PEGKFDRVI 174 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---------TT-EEEEE
T ss_pred cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc------CccccCEEE
Confidence 47899999999999999999977778999999876554 4455567654 899999998873 268899999
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
++.|.- ...||..+.+++++||.+.+
T Consensus 175 m~lp~~------------~~~fl~~~~~~~~~~g~ihy 200 (200)
T PF02475_consen 175 MNLPES------------SLEFLDAALSLLKEGGIIHY 200 (200)
T ss_dssp E--TSS------------GGGGHHHHHHHEEEEEEEEE
T ss_pred ECChHH------------HHHHHHHHHHHhcCCcEEEC
Confidence 986532 13799999999999999864
No 169
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.38 E-value=2.9e-06 Score=82.69 Aligned_cols=101 Identities=15% Similarity=0.196 Sum_probs=77.0
Q ss_pred CeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH----HHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 127 PLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 127 ~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a----~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
.+|||++||+|.+++.+|...+...|+++|+++.|.+.+ +.++++++.+.++|+..++.. ...+|.|.+.
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~-----~~~fD~V~lD- 132 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE-----ERKFDVVDID- 132 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh-----cCCCCEEEEC-
Confidence 589999999999999999886656899999876655544 456788889999999887431 3568999874
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE-eCcHHH
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-SDIEEV 244 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~-tD~~~~ 244 (311)
|. -. ...+++...+.+++||.++++ ||-..+
T Consensus 133 --P~-Gs--------~~~~l~~al~~~~~~gilyvSAtD~~~L 164 (382)
T PRK04338 133 --PF-GS--------PAPFLDSAIRSVKRGGLLCVTATDTAPL 164 (382)
T ss_pred --CC-CC--------cHHHHHHHHHHhcCCCEEEEEecCchhh
Confidence 42 11 137888877889999999996 555444
No 170
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.37 E-value=2.8e-06 Score=82.73 Aligned_cols=114 Identities=17% Similarity=0.150 Sum_probs=83.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH----cCC--CcEEEEEccccchhhhhhccCCCcEeEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGI--TNGYFIATNATSTFRSIVASYPGKLILV 198 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~----~~~--~Nv~f~~~Da~~ll~~~~~~~~~s~D~V 198 (311)
.+.+||++-|=||.+++..|... ...+++||+|..+++.+++ +|+ +.+.|+++|+...+...- .....||+|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gG-A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~-~~g~~fDlI 294 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGG-ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAE-RRGEKFDLI 294 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcC-CCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHH-hcCCcccEE
Confidence 36889999999999999999873 2389999999887777754 455 348999999999876532 123489999
Q ss_pred EEeCCCCCCCCchhhhhhh--HHHHHHHHHhcccCCeEEEEEeCc
Q 021567 199 SIQCPNPDFNRPEHRWRMV--QRSLVEAVSDLLVHDGKVFLQSDI 241 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~--~~~~l~~i~rvLkpGG~l~~~tD~ 241 (311)
++. |+-.-+.+..-.+.. ..+++..+.++|+|||.+++.|..
T Consensus 295 ilD-PPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 295 ILD-PPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred EEC-CcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 886 322222222222222 268889999999999999998754
No 171
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=1.9e-06 Score=85.21 Aligned_cols=156 Identities=23% Similarity=0.368 Sum_probs=99.0
Q ss_pred hhhhhhhhhhhhhhhh---ccCCCc------hhhhhhCCCchhhHhhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEE
Q 021567 83 LNMVESGSAVWEFLKG---RMLPGV------SALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFL 153 (311)
Q Consensus 83 ~~~fe~~a~~wd~~~~---r~~~~~------~~l~~~~~~~~~~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vv 153 (311)
+.+......+++.+.+ |++|+. ......+....+|... +....+||+.||||.+++++|+. -..|+
T Consensus 335 ~~l~~~~~~I~E~l~~ltF~iSp~AFFQ~Nt~~aevLys~i~e~~~l---~~~k~llDv~CGTG~iglala~~--~~~Vi 409 (534)
T KOG2187|consen 335 LQLVGGDPYITESLLGLTFRISPGAFFQTNTSAAEVLYSTIGEWAGL---PADKTLLDVCCGTGTIGLALARG--VKRVI 409 (534)
T ss_pred eEEEccccEEEeecCCeEEEECCchhhccCcHHHHHHHHHHHHHhCC---CCCcEEEEEeecCCceehhhhcc--cccee
Confidence 3344444455555555 555553 1222222233455443 34589999999999999999987 46899
Q ss_pred EEchHH----HHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcc
Q 021567 154 GLELVT----HCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLL 229 (311)
Q Consensus 154 GiDi~~----~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvL 229 (311)
|||+++ .|.++|+.+|++|++|+++.|++++..++...-++=+.+.+. ||--+. .+..+++.+.+.-
T Consensus 410 GvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl~~~~~~~~~~v~ii--DPpR~G-------lh~~~ik~l~~~~ 480 (534)
T KOG2187|consen 410 GVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPSLLTPCCDSETLVAII--DPPRKG-------LHMKVIKALRAYK 480 (534)
T ss_pred eeecChhhcchhhhcchhcCccceeeeecchhhccchhcccCCCCCceEEEE--CCCccc-------ccHHHHHHHHhcc
Confidence 999865 456666778999999999999998776553221233444444 553222 2357888887776
Q ss_pred cCCeEEEEEeCcHHHHHHHHHHH
Q 021567 230 VHDGKVFLQSDIEEVMLRMKQQF 252 (311)
Q Consensus 230 kpGG~l~~~tD~~~~~~~~~~~l 252 (311)
++-=.+|++..-...+..+.+.+
T Consensus 481 ~~~rlvyvSCn~~t~ar~v~~lc 503 (534)
T KOG2187|consen 481 NPRRLVYVSCNPHTAARNVIDLC 503 (534)
T ss_pred CccceEEEEcCHHHhhhhHHHhh
Confidence 68888888765443334444433
No 172
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.35 E-value=1.1e-06 Score=81.65 Aligned_cols=72 Identities=17% Similarity=0.127 Sum_probs=55.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcC-CCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG-ITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~-~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
++..|||||||+|.++..++++.+ +++|+|++..+.+.++++- .+|++++++|+.++ + + ++...+.|+.|.|
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~-~--~--~~~~~~~vv~NlP 114 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKV-D--L--SELQPLKVVANLP 114 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcC-C--H--HHcCcceEEEeCC
Confidence 457899999999999999999864 8999999888877775431 26899999999886 1 1 1211477777743
No 173
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.34 E-value=5.2e-06 Score=82.87 Aligned_cols=128 Identities=15% Similarity=0.141 Sum_probs=88.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhCC-CCeEEEEchHH----HHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVT----HCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~~----~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||+|||.|.=+..+|.... ...++++|++. ...+++++.|+.|+.+...|+..+ ...+ ++.||.|.
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~-~~~~---~~~fD~IL 188 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVF-GAAL---PETFDAIL 188 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhh-hhhc---hhhcCeEE
Confidence 468999999999999999999853 46899999854 455666777999999999999876 2222 56799998
Q ss_pred EeCCCC----CCCCchhhh--------hh--hHHHHHHHHHhcccCCeEEEEEe--CcHHHHHHHHHHH-HhcC
Q 021567 200 IQCPNP----DFNRPEHRW--------RM--VQRSLVEAVSDLLVHDGKVFLQS--DIEEVMLRMKQQF-LEYG 256 (311)
Q Consensus 200 i~fpdP----~~k~~h~kr--------Rl--~~~~~l~~i~rvLkpGG~l~~~t--D~~~~~~~~~~~l-~~~g 256 (311)
+.-|.. +.+++..++ ++ .+.++|+...+.|||||+++-+| -+..=.+..++.+ ++++
T Consensus 189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~~~ 262 (470)
T PRK11933 189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKETYP 262 (470)
T ss_pred EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHHCC
Confidence 775532 111111111 11 24799999999999999998765 2233344444433 4443
No 174
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=5.9e-06 Score=81.69 Aligned_cols=117 Identities=20% Similarity=0.229 Sum_probs=87.6
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHH----HHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT----HCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~----~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
+.++||+=||.|.|++.||++ ..+|+|+|++. .|.++|+.++++|++|..++++++....- ....+|.|++.
T Consensus 294 ~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~--~~~~~d~VvvD 369 (432)
T COG2265 294 GERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWW--EGYKPDVVVVD 369 (432)
T ss_pred CCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcc--ccCCCCEEEEC
Confidence 468999999999999999976 57999999854 55666677899999999999999854321 23578988775
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCC
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG 258 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~ 258 (311)
| |.+ -..+++++.+.+ ++|-..+|++++-..++..+. .+.+.|+.
T Consensus 370 ---P-PR~------G~~~~~lk~l~~-~~p~~IvYVSCNP~TlaRDl~-~L~~~gy~ 414 (432)
T COG2265 370 ---P-PRA------GADREVLKQLAK-LKPKRIVYVSCNPATLARDLA-ILASTGYE 414 (432)
T ss_pred ---C-CCC------CCCHHHHHHHHh-cCCCcEEEEeCCHHHHHHHHH-HHHhCCeE
Confidence 4 222 233577777765 588899999987766666555 45666654
No 175
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.32 E-value=5.3e-06 Score=76.20 Aligned_cols=57 Identities=18% Similarity=0.209 Sum_probs=47.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc--CCCcEEEEEccccch
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--GITNGYFIATNATST 183 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~--~~~Nv~f~~~Da~~l 183 (311)
++..|||||||+|.++..++++.+ .++++|+++.+.+.+++. ..+|+.++++|+..+
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~ 87 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKV 87 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcC
Confidence 467899999999999999999875 599999988777776543 246899999999876
No 176
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.31 E-value=2.2e-06 Score=79.08 Aligned_cols=70 Identities=20% Similarity=0.221 Sum_probs=55.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc--CCCcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--GITNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~--~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
++..|||||||+|.++..++++ ..+++|+|+++.+.+.+++. ..+|+.++++|+..+ + ...+|.|+.|.
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~-----~--~~~~d~Vv~Nl 99 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKV-----D--LPEFNKVVSNL 99 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccC-----C--chhceEEEEcC
Confidence 4578999999999999999998 35899999987777666542 246899999999876 2 12468888885
Q ss_pred C
Q 021567 203 P 203 (311)
Q Consensus 203 p 203 (311)
|
T Consensus 100 P 100 (258)
T PRK14896 100 P 100 (258)
T ss_pred C
Confidence 5
No 177
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.29 E-value=8.6e-06 Score=76.20 Aligned_cols=112 Identities=15% Similarity=0.127 Sum_probs=90.3
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc------C--CCcEEEEEccccchhhhhhccCCCcEeE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS------G--ITNGYFIATNATSTFRSIVASYPGKLIL 197 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~------~--~~Nv~f~~~Da~~ll~~~~~~~~~s~D~ 197 (311)
.++||-||-|.|..+..+.+..+..+++.||+.+.-++.+++. + -+++.++.+|+...+.. ....+|+
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~----~~~~fDv 152 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRD----CEEKFDV 152 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHh----CCCcCCE
Confidence 3599999999999999999998888999999877666655431 1 25799999999998654 2448999
Q ss_pred EEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHH
Q 021567 198 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVM 245 (311)
Q Consensus 198 V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~ 245 (311)
|++...||- -+...+.+.+|++.+++.|+++|.+..++.+..+.
T Consensus 153 Ii~D~tdp~----gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~ 196 (282)
T COG0421 153 IIVDSTDPV----GPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQ 196 (282)
T ss_pred EEEcCCCCC----CcccccCCHHHHHHHHHhcCCCcEEEEecCCcccc
Confidence 999988882 12345778999999999999999999997665444
No 178
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.29 E-value=9.5e-06 Score=74.46 Aligned_cols=121 Identities=18% Similarity=0.166 Sum_probs=86.4
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe-CCC
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ-CPN 204 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~-fpd 204 (311)
...+||||.|.|..+..||..+. ++.+.|+|..++.+.+++|.+ ++ |+.+. . ..+..+|+|... .-|
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~f~--~v~aTE~S~~Mr~rL~~kg~~---vl--~~~~w-~----~~~~~fDvIscLNvLD 162 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPLFK--EVYATEASPPMRWRLSKKGFT---VL--DIDDW-Q----QTDFKFDVISCLNVLD 162 (265)
T ss_pred CCceEEecCCCcHHHHHHHhhcc--eEEeecCCHHHHHHHHhCCCe---EE--ehhhh-h----ccCCceEEEeehhhhh
Confidence 46799999999999999999875 599999999999999888763 22 33333 1 135689999754 211
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe---------------------------CcHHHHHHHHHHHHhcCC
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS---------------------------DIEEVMLRMKQQFLEYGK 257 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t---------------------------D~~~~~~~~~~~l~~~g~ 257 (311)
|+.+- ..+|+.+++.|+|+|+++++. -+++....+.+.++..|+
T Consensus 163 -----Rc~~P----~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF 233 (265)
T PF05219_consen 163 -----RCDRP----LTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGF 233 (265)
T ss_pred -----ccCCH----HHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCC
Confidence 11110 389999999999999999851 123444555677788888
Q ss_pred Cceeeecccc
Q 021567 258 GKLVLVQDEC 267 (311)
Q Consensus 258 ~~~~~~~d~y 267 (311)
.....++-+|
T Consensus 234 ~v~~~tr~PY 243 (265)
T PF05219_consen 234 EVERWTRLPY 243 (265)
T ss_pred EEEEEeccCc
Confidence 7777766666
No 179
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.28 E-value=2.8e-06 Score=75.54 Aligned_cols=111 Identities=18% Similarity=0.170 Sum_probs=74.1
Q ss_pred HhhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHH----HHHHHcCCCcEE-EEEccccchhhhhh---c
Q 021567 118 SAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGITNGY-FIATNATSTFRSIV---A 189 (311)
Q Consensus 118 ~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~----~~a~~~~~~Nv~-f~~~Da~~ll~~~~---~ 189 (311)
.+.+.. .+..|||||||||.++..+|+++|+..+.-.|.....+ ..+.+.+++|+. -+..|+..-....- +
T Consensus 19 ~~~l~~-~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~ 97 (204)
T PF06080_consen 19 KQYLPD-SGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAP 97 (204)
T ss_pred HHHhCc-cCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccc
Confidence 344443 23369999999999999999999999999999755443 233456677753 34455544311000 1
Q ss_pred cCCCcEeEEEE-eC--CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 190 SYPGKLILVSI-QC--PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 190 ~~~~s~D~V~i-~f--pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
....++|.|+. |+ .-|| -..+.+++.+.++|++||.|++.
T Consensus 98 ~~~~~~D~i~~~N~lHI~p~---------~~~~~lf~~a~~~L~~gG~L~~Y 140 (204)
T PF06080_consen 98 LSPESFDAIFCINMLHISPW---------SAVEGLFAGAARLLKPGGLLFLY 140 (204)
T ss_pred cCCCCcceeeehhHHHhcCH---------HHHHHHHHHHHHhCCCCCEEEEe
Confidence 13568998863 21 2344 12368999999999999999985
No 180
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.27 E-value=6.2e-06 Score=74.89 Aligned_cols=94 Identities=16% Similarity=0.086 Sum_probs=59.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcE-EEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNG-YFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv-~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
.+.++||||||||.++..++++ ...+++|+|++..++....+.. .++ .+...|+..+....++..-..+|++++..
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~-~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~- 151 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQD-ERVKVLERTNIRYVTPADIFPDFATFDVSFISL- 151 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcC-CCeeEeecCCcccCCHhHcCCCceeeeEEEeeh-
Confidence 4678999999999999999987 3468999999875554322222 232 24444555332111111124677776652
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
...+..+.+.|+| |.+++
T Consensus 152 ---------------~~~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 152 ---------------ISILPELDLLLNP-NDLTL 169 (228)
T ss_pred ---------------HhHHHHHHHHhCc-CeEEE
Confidence 1457888899999 76665
No 181
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.24 E-value=1.9e-05 Score=69.51 Aligned_cols=94 Identities=27% Similarity=0.328 Sum_probs=72.7
Q ss_pred eEEEEeccccHHHHHHHhhCCCCeEEEEchHHH---HHHH-HHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 128 LVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH---CRDS-LQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 128 ~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~---a~~~-a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
+++|||+|.|-=++.+|-.+|+.+++.+|-+.+ .++. +...+++|++++++.+++. .....||.|+.--.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~------~~~~~fd~v~aRAv 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEP------EYRESFDVVTARAV 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHT------TTTT-EEEEEEESS
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeeccc------ccCCCccEEEeehh
Confidence 799999999999999999999999999996432 2333 3456899999999999981 14789999998744
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
.|. ..+++.+...|++||.+++.-
T Consensus 125 ~~l------------~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 125 APL------------DKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp SSH------------HHHHHHHGGGEEEEEEEEEEE
T ss_pred cCH------------HHHHHHHHHhcCCCCEEEEEc
Confidence 342 488999999999999988864
No 182
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.24 E-value=9.5e-06 Score=76.02 Aligned_cols=112 Identities=16% Similarity=0.155 Sum_probs=75.9
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCC--CcEEEEEccccchhhhhhccCCCcEeEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGI--TNGYFIATNATSTFRSIVASYPGKLILV 198 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~--~Nv~f~~~Da~~ll~~~~~~~~~s~D~V 198 (311)
.+.+|||+-|=||.|++..+... ...++.||+|..+++.++ .+++ ++++|+++|+.+.+...- ..+.||.|
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gG-A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~--~~~~fD~I 199 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGG-AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLK--KGGRFDLI 199 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTT-ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHH--HTT-EEEE
T ss_pred CCCceEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHh--cCCCCCEE
Confidence 46899999999999999887653 357999999887776665 3564 479999999998765421 35689999
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 241 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~ 241 (311)
++. |+..-|.+..-.| -..+++..+.++|+|||.+++.|..
T Consensus 200 IlD-PPsF~k~~~~~~~-~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 200 ILD-PPSFAKSKFDLER-DYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp EE---SSEESSTCEHHH-HHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred EEC-CCCCCCCHHHHHH-HHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 987 3333222221111 2367889999999999999987755
No 183
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.24 E-value=7.6e-06 Score=78.00 Aligned_cols=120 Identities=16% Similarity=0.188 Sum_probs=85.9
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCCCcEEEEEc-cccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGITNGYFIAT-NATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~~Nv~f~~~-Da~~ll~~~~~~~~~s~D~V~ 199 (311)
.+..+||==||||.+++...-. +.+++|.|+...+.+-++ ..++++..++.. ||..+ |.++.+||.|.
T Consensus 197 ~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~l-----pl~~~~vdaIa 269 (347)
T COG1041 197 RGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNL-----PLRDNSVDAIA 269 (347)
T ss_pred cCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccC-----CCCCCccceEE
Confidence 4679999999999999999876 789999998766655544 346677767766 99988 44567899997
Q ss_pred EeCCCCCCCCchhh--h-h--hhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCce
Q 021567 200 IQCPNPDFNRPEHR--W-R--MVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 200 i~fpdP~~k~~h~k--r-R--l~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~ 260 (311)
.. | |..+..+ . + -+..++|+.++++|++||++.|.++. ...+.+.+.++..+
T Consensus 270 tD---P-PYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~-----~~~~~~~~~~f~v~ 326 (347)
T COG1041 270 TD---P-PYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPR-----DPRHELEELGFKVL 326 (347)
T ss_pred ec---C-CCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCC-----cchhhHhhcCceEE
Confidence 65 3 2222211 1 1 12379999999999999999999872 22334556666543
No 184
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.17 E-value=1.3e-05 Score=70.36 Aligned_cols=108 Identities=16% Similarity=0.198 Sum_probs=73.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCCCc-EEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGITN-GYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~~N-v~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.++||+-||||.+++....+. ...++.||.+..+.+.++ .-+..+ +..+++|+...+.... .....||.|+
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~-~~~~~fDiIf 119 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLA-KKGEKFDIIF 119 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHH-HCTS-EEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhc-ccCCCceEEE
Confidence 46899999999999999988875 358999998876665554 345544 9999999887765431 1468899997
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHH--hcccCCeEEEEEeCcH
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVS--DLLVHDGKVFLQSDIE 242 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~--rvLkpGG~l~~~tD~~ 242 (311)
+. +|. .... .....++.+. .+|+++|.+++.++..
T Consensus 120 lD--PPY-~~~~-----~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 120 LD--PPY-AKGL-----YYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp E----ST-TSCH-----HHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred EC--CCc-ccch-----HHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 75 333 2211 1246777776 8999999999987543
No 185
>PRK04148 hypothetical protein; Provisional
Probab=98.14 E-value=1.7e-05 Score=66.19 Aligned_cols=72 Identities=10% Similarity=0.091 Sum_probs=56.2
Q ss_pred CCCeEEEEeccccH-HHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 125 AQPLVVDIGSGNGL-FLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 125 ~~~~vLDIGcGtG~-~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
.+.++||||||+|. ++..|++. +..|+|+|+++.+.+.++..+ +.++++|+.+--.++ -..+|+|+..-|
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~~---~~~v~dDlf~p~~~~----y~~a~liysirp 86 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKLG---LNAFVDDLFNPNLEI----YKNAKLIYSIRP 86 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHhC---CeEEECcCCCCCHHH----HhcCCEEEEeCC
Confidence 35689999999995 88888876 679999999999999887664 578899987642111 246799998877
Q ss_pred CC
Q 021567 204 NP 205 (311)
Q Consensus 204 dP 205 (311)
.|
T Consensus 87 p~ 88 (134)
T PRK04148 87 PR 88 (134)
T ss_pred CH
Confidence 66
No 186
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.13 E-value=8.3e-06 Score=76.83 Aligned_cols=71 Identities=17% Similarity=0.171 Sum_probs=54.9
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH----cC-CCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SG-ITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~----~~-~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++..|||||||+|.++..+++.. .+++|+|++..+.+.+++ .+ .+|++++++|+... + ...+|.|+
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~-----~--~~~~d~Vv 106 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKT-----E--FPYFDVCV 106 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhh-----c--ccccCEEE
Confidence 46789999999999999999873 579999987766665543 33 46899999999775 1 23578888
Q ss_pred EeCCC
Q 021567 200 IQCPN 204 (311)
Q Consensus 200 i~fpd 204 (311)
.|.|-
T Consensus 107 aNlPY 111 (294)
T PTZ00338 107 ANVPY 111 (294)
T ss_pred ecCCc
Confidence 88653
No 187
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.12 E-value=2.9e-05 Score=72.35 Aligned_cols=119 Identities=15% Similarity=0.198 Sum_probs=85.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCC--CeEEEEchHH----HHHHHHHHcCCCcE-EEEEccccchhhhhh---ccCC-C
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKD--LNFLGLELVT----HCRDSLQLSGITNG-YFIATNATSTFRSIV---ASYP-G 193 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~--~~vvGiDi~~----~a~~~a~~~~~~Nv-~f~~~Da~~ll~~~~---~~~~-~ 193 (311)
..-+||||.||.|...+.....+|. ..+.-.|.++ ...+.++++|+.++ +|.++||.+. ..+- |.++ .
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~-~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDR-DSLAALDPAPTLA 213 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCH-hHhhccCCCCCEE
Confidence 3468999999999999999998886 7899999754 45556678899887 9999999886 2221 1111 1
Q ss_pred cEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeC--cHHHHHHHHHHHHhc
Q 021567 194 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD--IEEVMLRMKQQFLEY 255 (311)
Q Consensus 194 s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD--~~~~~~~~~~~l~~~ 255 (311)
.+..++=.|||-. ++ ...++.+++.+.|||+++. |. +.+..+.+...+..|
T Consensus 214 iVsGL~ElF~Dn~---------lv-~~sl~gl~~al~pgG~lIy-TgQPwHPQle~IAr~LtsH 266 (311)
T PF12147_consen 214 IVSGLYELFPDND---------LV-RRSLAGLARALEPGGYLIY-TGQPWHPQLEMIARVLTSH 266 (311)
T ss_pred EEecchhhCCcHH---------HH-HHHHHHHHHHhCCCcEEEE-cCCCCCcchHHHHHHHhcc
Confidence 2333344577642 22 3668899999999999987 54 666666667777665
No 188
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.11 E-value=1.2e-05 Score=79.95 Aligned_cols=99 Identities=14% Similarity=0.175 Sum_probs=64.7
Q ss_pred CCeEEEEeccccHHHHHHHhh----CCCCeEEEEchHHHHH----HHHHHcCC-CcEEEEEccccchhhhhhccCCCcEe
Q 021567 126 QPLVVDIGSGNGLFLLGMARK----RKDLNFLGLELVTHCR----DSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLI 196 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~----~p~~~vvGiDi~~~a~----~~a~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D 196 (311)
..+|+|||||+|-+....++. ....+|++||.+..|. ++++.++. ++|+++++|+++.- .+..+|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~------lpekvD 260 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVE------LPEKVD 260 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSC------HSS-EE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCC------CCCcee
Confidence 468999999999997665443 3457999999754433 23356676 67999999999872 145899
Q ss_pred EEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEE
Q 021567 197 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF 236 (311)
Q Consensus 197 ~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~ 236 (311)
.|+.-.-.-.- -. ...++.|....|.|||||.++
T Consensus 261 IIVSElLGsfg-----~n-El~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 261 IIVSELLGSFG-----DN-ELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEEE---BTTB-----TT-TSHHHHHHHGGGGEEEEEEEE
T ss_pred EEEEeccCCcc-----cc-ccCHHHHHHHHhhcCCCCEEe
Confidence 99754221110 00 133688999999999999765
No 189
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.11 E-value=7.9e-06 Score=72.79 Aligned_cols=105 Identities=10% Similarity=0.128 Sum_probs=64.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC-
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP- 203 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp- 203 (311)
..-+|-|+|||.+.++..+.. ...|.-.|++.. |=.+..+|+..+ |.+++++|.+++...
T Consensus 72 ~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~-----------n~~Vtacdia~v-----PL~~~svDv~VfcLSL 132 (219)
T PF05148_consen 72 KSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP-----------NPRVTACDIANV-----PLEDESVDVAVFCLSL 132 (219)
T ss_dssp TTS-EEEES-TT-HHHHH--S------EEEEESS-S-----------STTEEES-TTS------S--TT-EEEEEEES--
T ss_pred CCEEEEECCCchHHHHHhccc---CceEEEeeccCC-----------CCCEEEecCccC-----cCCCCceeEEEEEhhh
Confidence 457999999999999865542 357999998541 223667898776 668999999876532
Q ss_pred --CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHH---HHHHHHHHHHhcCCCcee
Q 021567 204 --NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE---VMLRMKQQFLEYGKGKLV 261 (311)
Q Consensus 204 --dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~---~~~~~~~~l~~~g~~~~~ 261 (311)
.-| ..|+.|..|+|||||.+.+.- ... -.+...+.++..|+....
T Consensus 133 MGTn~------------~~fi~EA~RvLK~~G~L~IAE-V~SRf~~~~~F~~~~~~~GF~~~~ 182 (219)
T PF05148_consen 133 MGTNW------------PDFIREANRVLKPGGILKIAE-VKSRFENVKQFIKALKKLGFKLKS 182 (219)
T ss_dssp -SS-H------------HHHHHHHHHHEEEEEEEEEEE-EGGG-S-HHHHHHHHHCTTEEEEE
T ss_pred hCCCc------------HHHHHHHHheeccCcEEEEEE-ecccCcCHHHHHHHHHHCCCeEEe
Confidence 222 599999999999999999862 111 124556667888886543
No 190
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.10 E-value=3.3e-05 Score=70.78 Aligned_cols=103 Identities=12% Similarity=0.198 Sum_probs=72.3
Q ss_pred CCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 124 PAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 124 ~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
+.+.+|-|+|||-+.++. .. ..+|+..|+.. .|=+++.+|+.++ |.+|+++|++++...
T Consensus 179 ~~~~vIaD~GCGEakiA~--~~---~~kV~SfDL~a-----------~~~~V~~cDm~~v-----Pl~d~svDvaV~CLS 237 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS--SE---RHKVHSFDLVA-----------VNERVIACDMRNV-----PLEDESVDVAVFCLS 237 (325)
T ss_pred cCceEEEecccchhhhhh--cc---ccceeeeeeec-----------CCCceeeccccCC-----cCccCcccEEEeeHh
Confidence 357899999999998776 22 23688888743 2446778898886 668999998865421
Q ss_pred ---CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeC---cHHHHHHHHHHHHhcCCCce
Q 021567 204 ---NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD---IEEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 204 ---dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD---~~~~~~~~~~~l~~~g~~~~ 260 (311)
..| ..|+.++.|+|+|||.+++.-- ..+ ....++.+...|+...
T Consensus 238 LMgtn~------------~df~kEa~RiLk~gG~l~IAEv~SRf~d-v~~f~r~l~~lGF~~~ 287 (325)
T KOG3045|consen 238 LMGTNL------------ADFIKEANRILKPGGLLYIAEVKSRFSD-VKGFVRALTKLGFDVK 287 (325)
T ss_pred hhcccH------------HHHHHHHHHHhccCceEEEEehhhhccc-HHHHHHHHHHcCCeee
Confidence 111 5999999999999999999621 111 2235667778888643
No 191
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.08 E-value=2.9e-05 Score=74.91 Aligned_cols=117 Identities=23% Similarity=0.325 Sum_probs=72.7
Q ss_pred CeEEEEeccccHHHHHHHhhCCCCeEEEEchHHH----HHHHHHHcCCCcEEEEEccccchhhhh-----h------ccC
Q 021567 127 PLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSI-----V------ASY 191 (311)
Q Consensus 127 ~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~----a~~~a~~~~~~Nv~f~~~Da~~ll~~~-----~------~~~ 191 (311)
..+||+-||.|.+++.||+.. ..|+|||+++. |.++++.++++|++|++++++++...+ | ...
T Consensus 198 ~~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~ 275 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKGIDLK 275 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGGS-GG
T ss_pred CcEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHhhhhhhhh
Confidence 479999999999999999984 58999997654 555666778999999999987753211 0 001
Q ss_pred CCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCce
Q 021567 192 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 192 ~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~ 260 (311)
...+|.|.+ || |.+. ..+.+++.+.+ +.=.+|+++|-..++..+.. |.+ |+...
T Consensus 276 ~~~~d~vil---DP-PR~G------~~~~~~~~~~~---~~~ivYvSCnP~tlaRDl~~-L~~-~y~~~ 329 (352)
T PF05958_consen 276 SFKFDAVIL---DP-PRAG------LDEKVIELIKK---LKRIVYVSCNPATLARDLKI-LKE-GYKLE 329 (352)
T ss_dssp CTTESEEEE-------TT-------SCHHHHHHHHH---SSEEEEEES-HHHHHHHHHH-HHC-CEEEE
T ss_pred hcCCCEEEE---cC-CCCC------chHHHHHHHhc---CCeEEEEECCHHHHHHHHHH-Hhh-cCEEE
Confidence 235788866 45 2222 22455665543 45789999988888777765 443 66544
No 192
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.06 E-value=4.3e-05 Score=65.76 Aligned_cols=108 Identities=15% Similarity=0.155 Sum_probs=78.0
Q ss_pred CCCeEEEEeccccHHHHHHHhh-CCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~-~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
.+.-|||+|.|||-++.++.++ .++..++.||.+..-...+.+. .+.+.++.+|+.++-...=...+..||.|+...|
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~-~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lP 126 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL-YPGVNIINGDAFDLRTTLGEHKGQFFDSVISGLP 126 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh-CCCccccccchhhHHHHHhhcCCCeeeeEEeccc
Confidence 3557999999999999999776 7788999999987665555433 3567799999998732221235678999976543
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
---+ + .++|+ ++|+++...|.+||.++.-|
T Consensus 127 ll~~--P-~~~~i---aile~~~~rl~~gg~lvqft 156 (194)
T COG3963 127 LLNF--P-MHRRI---AILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred cccC--c-HHHHH---HHHHHHHHhcCCCCeEEEEE
Confidence 2111 1 22333 89999999999999998765
No 193
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.06 E-value=2.5e-06 Score=84.44 Aligned_cols=98 Identities=13% Similarity=0.099 Sum_probs=66.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEch---HHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE-
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL---VTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI- 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi---~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i- 200 (311)
.-.++||||||+|.|+.+|.++ +...+.+-. .+...+.|.++|++-+.-+.+ ...+|+++++||.|+.
T Consensus 117 ~iR~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~------s~rLPfp~~~fDmvHcs 188 (506)
T PF03141_consen 117 GIRTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALERGVPAMIGVLG------SQRLPFPSNAFDMVHCS 188 (506)
T ss_pred ceEEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhhcCcchhhhhhc------cccccCCccchhhhhcc
Confidence 3468999999999999999988 344444332 233455666677643211111 1234778999999964
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.+-.||.... .-+|-++-|+|+|||+|+++
T Consensus 189 rc~i~W~~~~--------g~~l~evdRvLRpGGyfv~S 218 (506)
T PF03141_consen 189 RCLIPWHPND--------GFLLFEVDRVLRPGGYFVLS 218 (506)
T ss_pred cccccchhcc--------cceeehhhhhhccCceEEec
Confidence 4677884321 25788999999999999985
No 194
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.06 E-value=5.3e-05 Score=68.27 Aligned_cols=101 Identities=18% Similarity=0.258 Sum_probs=78.8
Q ss_pred CCeEEEEeccccHHHHHHHhhCC-CCeEEEEchHHHH----HHHHHHcCC-CcEEEEEccccchhhhhhcc-CCCcEeEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTHC----RDSLQLSGI-TNGYFIATNATSTFRSIVAS-YPGKLILV 198 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~~~a----~~~a~~~~~-~Nv~f~~~Da~~ll~~~~~~-~~~s~D~V 198 (311)
..++||||.=||..++..|...| +..++++|+...+ .+..+..|. ..+.++++++.+.+++.++. ..++||.+
T Consensus 74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfa 153 (237)
T KOG1663|consen 74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFA 153 (237)
T ss_pred CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEE
Confidence 57899999999999999999866 6799999986443 444455665 46999999999988877642 35789988
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
++ |.| |.+ +..+.+++.++|++||.+++
T Consensus 154 Fv---Dad------K~n--Y~~y~e~~l~Llr~GGvi~~ 181 (237)
T KOG1663|consen 154 FV---DAD------KDN--YSNYYERLLRLLRVGGVIVV 181 (237)
T ss_pred EE---ccc------hHH--HHHHHHHHHhhcccccEEEE
Confidence 65 444 222 23888999999999999987
No 195
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.02 E-value=9e-06 Score=68.41 Aligned_cols=97 Identities=14% Similarity=0.193 Sum_probs=66.8
Q ss_pred cCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc----CCCcEEEEEccccchhhhhhccCCCcEe
Q 021567 121 YHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS----GITNGYFIATNATSTFRSIVASYPGKLI 196 (311)
Q Consensus 121 f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~----~~~Nv~f~~~Da~~ll~~~~~~~~~s~D 196 (311)
+++-++..++|+|||.|.+.++.+- +.+..++|+|+.+.|++.+.++ .+ ++.++++|+.++. +..+.||
T Consensus 44 ygdiEgkkl~DLgcgcGmLs~a~sm-~~~e~vlGfDIdpeALEIf~rNaeEfEv-qidlLqcdildle-----~~~g~fD 116 (185)
T KOG3420|consen 44 YGDIEGKKLKDLGCGCGMLSIAFSM-PKNESVLGFDIDPEALEIFTRNAEEFEV-QIDLLQCDILDLE-----LKGGIFD 116 (185)
T ss_pred hccccCcchhhhcCchhhhHHHhhc-CCCceEEeeecCHHHHHHHhhchHHhhh-hhheeeeeccchh-----ccCCeEe
Confidence 3333578899999999999966553 3356899999988887766543 22 6789999998872 1358999
Q ss_pred EEEEeCCCCCCCCchhhhhhhHHHHHHHHHhccc
Q 021567 197 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLV 230 (311)
Q Consensus 197 ~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLk 230 (311)
.+.+| .|+ -.|+|..+.+|+.....+.+
T Consensus 117 taviN--ppF----GTk~~~aDm~fv~~al~~~~ 144 (185)
T KOG3420|consen 117 TAVIN--PPF----GTKKKGADMEFVSAALKVAS 144 (185)
T ss_pred eEEec--CCC----CcccccccHHHHHHHHHHHH
Confidence 99988 232 12334455677666555544
No 196
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.00 E-value=0.00012 Score=70.65 Aligned_cols=113 Identities=16% Similarity=0.214 Sum_probs=80.9
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCC--CeEEEEchHH----HHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKD--LNFLGLELVT----HCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILV 198 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~--~~vvGiDi~~----~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V 198 (311)
++.+|||.+.+.|.=+..+|+..++ ..|+++|++. ...+++++.|..|+..++.|+..+... .+ ..+.||.|
T Consensus 156 pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~-~~-~~~~fD~i 233 (355)
T COG0144 156 PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAEL-LP-GGEKFDRI 233 (355)
T ss_pred CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccccc-cc-ccCcCcEE
Confidence 5789999999999999999998554 5679999864 455566678999999999998766222 11 12359998
Q ss_pred EEeCC---------CCCCCCchhhh-----hhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 199 SIQCP---------NPDFNRPEHRW-----RMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 199 ~i~fp---------dP~~k~~h~kr-----Rl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
.+.-| +|..+.....+ --++.++|+...+.|||||.++-+|
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYST 288 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYST 288 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 76533 33222221111 1235799999999999999999876
No 197
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.00 E-value=4e-05 Score=66.54 Aligned_cols=105 Identities=17% Similarity=0.230 Sum_probs=63.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHH---HHHHHHHHcC---CCcEEEEEccccchh-hhhhccCCCcEeE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT---HCRDSLQLSG---ITNGYFIATNATSTF-RSIVASYPGKLIL 197 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~---~a~~~a~~~~---~~Nv~f~~~Da~~ll-~~~~~~~~~s~D~ 197 (311)
.+.+|||+|||+|-.++.+|+..+...|+..|..+ .+..+++.++ ..++.+...|..+-. ...+ .+..||.
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~--~~~~~D~ 122 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL--EPHSFDV 122 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHH--S-SSBSE
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCccccccc--ccccCCE
Confidence 46799999999999999999986678999999644 3344444443 356777777764422 2222 3568999
Q ss_pred EEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 198 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 198 V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
|... |-..... ..+.+++-+.+.|+|+|.+++..
T Consensus 123 Ilas--Dv~Y~~~------~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 123 ILAS--DVLYDEE------LFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp EEEE--S--S-GG------GHHHHHHHHHHHBTT-TTEEEEE
T ss_pred EEEe--cccchHH------HHHHHHHHHHHHhCCCCEEEEEe
Confidence 8754 3322111 23699999999999999877754
No 198
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.99 E-value=4.8e-05 Score=73.99 Aligned_cols=115 Identities=17% Similarity=0.260 Sum_probs=84.0
Q ss_pred CeEEEEeccccHHHHHHHhhCC-CCeEEEEchHHHHHHHH----HHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 127 PLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 127 ~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~~~a~~~a----~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
.+|||+.||+|..++.++.+.+ -..++++|++..|.+.+ +.++..|+.++++|+..++.. ....||.|.+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~----~~~~fDvIdl- 120 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRY----RNRKFHVIDI- 120 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHH----hCCCCCEEEe-
Confidence 5899999999999999999853 35899999977665544 455677899999999988643 2356898876
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE-eCcHHHHH-HHHHHHHhcCC
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-SDIEEVML-RMKQQFLEYGK 257 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~-tD~~~~~~-~~~~~l~~~g~ 257 (311)
|| +... ..|++.+.+.+++||.+++. ||...+.. ....-+..+|.
T Consensus 121 --DP-fGs~--------~~fld~al~~~~~~glL~vTaTD~~~L~G~~~~~~~rkYga 167 (374)
T TIGR00308 121 --DP-FGTP--------APFVDSAIQASAERGLLLVTATDTSALCGNYPKSCLRKYGA 167 (374)
T ss_pred --CC-CCCc--------HHHHHHHHHhcccCCEEEEEecccHHhcCCChHHHHHHhCC
Confidence 56 2211 37999999999999999986 77665422 22333445443
No 199
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.97 E-value=1.7e-05 Score=68.41 Aligned_cols=74 Identities=16% Similarity=0.154 Sum_probs=48.7
Q ss_pred eEEEEeccccHHHHHHHhhCCCCeEEEEchHH----HHHHHHHHcCC-CcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 128 LVVDIGSGNGLFLLGMARKRKDLNFLGLELVT----HCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 128 ~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~----~a~~~a~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
.|+|+.||.|..++++|+.+ .+|++||+.+ .|..+++-.|. +|+.|+++|..+++...- ....+|.|++.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~--~~~~~D~vFlS- 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLK--SNKIFDVVFLS- 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB--------SEEEE--
T ss_pred EEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhcc--ccccccEEEEC-
Confidence 69999999999999999995 4799999864 45555555674 689999999999854321 11227999876
Q ss_pred CCCCC
Q 021567 203 PNPDF 207 (311)
Q Consensus 203 pdP~~ 207 (311)
+||=
T Consensus 77 -PPWG 80 (163)
T PF09445_consen 77 -PPWG 80 (163)
T ss_dssp ---BS
T ss_pred -CCCC
Confidence 6773
No 200
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.97 E-value=6.6e-06 Score=76.16 Aligned_cols=98 Identities=15% Similarity=0.119 Sum_probs=69.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
.+..++|+|||.|..+.. +|...++|.|++...+.-+++.+.+ ..+.+|+..+ |..+.+||.....-.-
T Consensus 45 ~gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~~~~~--~~~~ad~l~~-----p~~~~s~d~~lsiavi 113 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKRSGGD--NVCRADALKL-----PFREESFDAALSIAVI 113 (293)
T ss_pred CcceeeecccCCcccCcC----CCcceeeecchhhhhccccccCCCc--eeehhhhhcC-----CCCCCccccchhhhhh
Confidence 478999999999998753 4888999999987666655544433 6778999887 5567888876432222
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.|+..+ .-+...++++.|+|+|||...+.
T Consensus 114 hhlsT~-----~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 114 HHLSTR-----ERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred hhhhhH-----HHHHHHHHHHHHHhcCCCceEEE
Confidence 222221 22258899999999999987663
No 201
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.95 E-value=1.3e-05 Score=63.46 Aligned_cols=96 Identities=18% Similarity=0.260 Sum_probs=43.9
Q ss_pred EEEeccccHHHHHHHhhCCCC---eEEEEchHH---HHHHHHHHcCC-CcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 130 VDIGSGNGLFLLGMARKRKDL---NFLGLELVT---HCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 130 LDIGcGtG~~~~~lA~~~p~~---~vvGiDi~~---~a~~~a~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
|||||..|..+..+++..+.. +++++|... ...+.+++.++ .+++++++|..+.++.+. +..+|.+++.-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~---~~~~dli~iDg 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP---DGPIDLIFIDG 77 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHH---H--EEEEEEES
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcC---CCCEEEEEECC
Confidence 799999999999998865433 699999755 45555554444 479999999988866432 57999999873
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
. |.. +.+ ..-++.+.+.|+|||.+++
T Consensus 78 ~-------H~~-~~~-~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 78 D-------HSY-EAV-LRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp ----------H-HHH-HHHHHHHGGGEEEEEEEEE
T ss_pred C-------CCH-HHH-HHHHHHHHHHcCCCeEEEE
Confidence 2 111 111 3668889999999999887
No 202
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.90 E-value=3.1e-05 Score=67.24 Aligned_cols=107 Identities=18% Similarity=0.193 Sum_probs=65.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhC-CCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccch-----hhhhhccCCCcEeEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHCRDSLQLSGITNGYFIATNATST-----FRSIVASYPGKLILV 198 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~-p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~l-----l~~~~~~~~~s~D~V 198 (311)
....+||+||++|.++..+.++. +...++|+|+... ...+++.++++|..+. +...++.....+|+|
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv 95 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-------DPLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLV 95 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEE
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc-------ccccceeeeecccchhhHHHhhhhhccccccCccee
Confidence 35899999999999999999986 6789999997543 2336788888887653 122222123689999
Q ss_pred EEeCCCCCCCCc---hh-hhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 199 SIQCPNPDFNRP---EH-RWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 199 ~i~fpdP~~k~~---h~-krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+.....+....+ +. ..++. ...+.-+...|+|||.+++.+
T Consensus 96 ~~D~~~~~~g~~~~d~~~~~~l~-~~~l~~a~~~L~~gG~~v~K~ 139 (181)
T PF01728_consen 96 LSDMAPNVSGDRNIDEFISIRLI-LSQLLLALELLKPGGTFVIKV 139 (181)
T ss_dssp EE-------SSHHSSHHHHHHHH-HHHHHHHHHHHCTTEEEEEEE
T ss_pred ccccccCCCCchhhHHHHHHHHH-HHHHHHHHhhhcCCCEEEEEe
Confidence 876522211110 11 11222 233446668899999988865
No 203
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.89 E-value=8e-05 Score=70.50 Aligned_cols=96 Identities=19% Similarity=0.335 Sum_probs=67.0
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchH---HHHHHHHHHcCC-CcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV---THCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~---~~a~~~a~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
.+.+|||+|||+|.+..-.|+.. ..++.+||.+ +.|.+.++.+.+ +++.++.|.++++ + + ++.+|.++.
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdi-e--L---PEk~DviIS 249 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAG-AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDI-E--L---PEKVDVIIS 249 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhC-cceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccc-c--C---chhccEEEe
Confidence 36899999999999998888764 4689999965 456666665554 5699999999987 1 2 577888754
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHH---HHhcccCCeEEE
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEA---VSDLLVHDGKVF 236 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~---i~rvLkpGG~l~ 236 (311)
- |.- --+++++.|+. .++.|||.|..+
T Consensus 250 E---PMG------~mL~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 250 E---PMG------YMLVNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred c---cch------hhhhhHHHHHHHHHHHhhcCCCCccc
Confidence 3 210 01233444442 358999998765
No 204
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=5.7e-05 Score=67.23 Aligned_cols=96 Identities=17% Similarity=0.251 Sum_probs=70.1
Q ss_pred CCCeEEEEeccccHHHHHHHhh--CCCCeEEEEch----HHHHHHHHHHc----------CCCcEEEEEccccchhhhhh
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK--RKDLNFLGLEL----VTHCRDSLQLS----------GITNGYFIATNATSTFRSIV 188 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~--~p~~~vvGiDi----~~~a~~~a~~~----------~~~Nv~f~~~Da~~ll~~~~ 188 (311)
++-..||||+|||.++..+|.. .+..+.+|||. ++.+.+++... ...++.++.+|......
T Consensus 82 pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~--- 158 (237)
T KOG1661|consen 82 PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYA--- 158 (237)
T ss_pred cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCC---
Confidence 4678999999999999999965 44556699994 34444444321 12468999999988732
Q ss_pred ccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 189 ASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 189 ~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
....+|.|++.-..+ +..+++...|+|||.+++-.
T Consensus 159 --e~a~YDaIhvGAaa~--------------~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 159 --EQAPYDAIHVGAAAS--------------ELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred --ccCCcceEEEccCcc--------------ccHHHHHHhhccCCeEEEee
Confidence 467899999884433 55677788899999998853
No 205
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.87 E-value=0.00026 Score=55.58 Aligned_cols=100 Identities=18% Similarity=0.217 Sum_probs=64.3
Q ss_pred EEEEeccccHHHHHHHhhCCC-CeEEEEchHHHHHHHHHHcC--CC-c-EEEEEccccchhhhhhccCC-CcEeEEEEeC
Q 021567 129 VVDIGSGNGLFLLGMARKRKD-LNFLGLELVTHCRDSLQLSG--IT-N-GYFIATNATSTFRSIVASYP-GKLILVSIQC 202 (311)
Q Consensus 129 vLDIGcGtG~~~~~lA~~~p~-~~vvGiDi~~~a~~~a~~~~--~~-N-v~f~~~Da~~ll~~~~~~~~-~s~D~V~i~f 202 (311)
++|+|||+|... .++...+. ..++|+|.+..++....... .. + +.+..+|.... .++..+ ..+|.+ ...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~-~~~ 126 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGG---VLPFEDSASFDLV-ISL 126 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccC---CCCCCCCCceeEE-eee
Confidence 999999999977 44444333 48999998765555432221 11 1 67888887762 113344 489988 443
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 241 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~ 241 (311)
...+... ....+.++.+.|+|+|.+.+....
T Consensus 127 ~~~~~~~--------~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 127 LVLHLLP--------PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred eehhcCC--------HHHHHHHHHHhcCCCcEEEEEecc
Confidence 3221111 247899999999999999987543
No 206
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.79 E-value=0.00037 Score=61.27 Aligned_cols=107 Identities=13% Similarity=0.184 Sum_probs=73.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH----cCC-CcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGI-TNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~----~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.++||+-+|+|.+++..+.+. ...++.||.+.++.+.+++ .+. .++.++..|+...++..- ..+.||.|+
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~--~~~~FDlVf 119 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLG--TREPFDLVF 119 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcC--CCCcccEEE
Confidence 47899999999999999999886 3589999987766655543 342 479999999997654311 223599997
Q ss_pred EeCCCCCCCCchhhhhhhH-HHHHH--HHHhcccCCeEEEEEeCcH
Q 021567 200 IQCPNPDFNRPEHRWRMVQ-RSLVE--AVSDLLVHDGKVFLQSDIE 242 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~-~~~l~--~i~rvLkpGG~l~~~tD~~ 242 (311)
+. |-+.+. +.. ..-+. +-..+|+|+|.+++.++..
T Consensus 120 lD---PPy~~~-----l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 120 LD---PPYAKG-----LLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred eC---CCCccc-----hhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 64 433221 221 11122 2357899999999988654
No 207
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.79 E-value=6.7e-05 Score=69.25 Aligned_cols=71 Identities=17% Similarity=0.111 Sum_probs=56.1
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc--CCCcEEEEEccccchhhhhhccCCC-cEeEEEEeC
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--GITNGYFIATNATSTFRSIVASYPG-KLILVSIQC 202 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~--~~~Nv~f~~~Da~~ll~~~~~~~~~-s~D~V~i~f 202 (311)
+..|||||+|.|.++..|+++. ..++++|+.......+++. ..+|+.++++|+...- + ++- ..+.|+.|-
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d---~--~~l~~~~~vVaNl 103 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERA--ARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFD---F--PSLAQPYKVVANL 103 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhc--CeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCc---c--hhhcCCCEEEEcC
Confidence 5789999999999999999994 5799999987777766554 3579999999998871 2 221 567888885
Q ss_pred C
Q 021567 203 P 203 (311)
Q Consensus 203 p 203 (311)
|
T Consensus 104 P 104 (259)
T COG0030 104 P 104 (259)
T ss_pred C
Confidence 5
No 208
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.75 E-value=0.00026 Score=63.74 Aligned_cols=115 Identities=21% Similarity=0.166 Sum_probs=79.6
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHH---HHHHHH-HHcCCCcEEEEEccccchhhhhhccCCCc-EeEEEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT---HCRDSL-QLSGITNGYFIATNATSTFRSIVASYPGK-LILVSI 200 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~---~a~~~a-~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s-~D~V~i 200 (311)
..+++|||+|.|-=++.||-.+|+.+++-+|-.. .-++.+ ++.+++|++++++.++++-. +.. +|.|+.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~------~~~~~D~vts 141 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQ------EKKQYDVVTS 141 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhccc------ccccCcEEEe
Confidence 4789999999999999999889999999999532 223333 45789999999999999821 122 899986
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE--eCcHHHHHHHHHHHHhcCCC
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ--SDIEEVMLRMKQQFLEYGKG 258 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~--tD~~~~~~~~~~~l~~~g~~ 258 (311)
--..+- ..+++-+...||+||.+.+. .-..++..+..+.....++.
T Consensus 142 RAva~L------------~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~ 189 (215)
T COG0357 142 RAVASL------------NVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQ 189 (215)
T ss_pred ehccch------------HHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCc
Confidence 522221 47788889999999886432 11233344444444444443
No 209
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.75 E-value=0.00027 Score=74.12 Aligned_cols=117 Identities=16% Similarity=0.081 Sum_probs=74.7
Q ss_pred CCeEEEEeccccHHHHHHHhhC------------------------------------------CCCeEEEEchHHHH--
Q 021567 126 QPLVVDIGSGNGLFLLGMARKR------------------------------------------KDLNFLGLELVTHC-- 161 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~------------------------------------------p~~~vvGiDi~~~a-- 161 (311)
+..++|-+||+|++++..|... ....++|+|+++.+
T Consensus 191 ~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~ 270 (702)
T PRK11783 191 GTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQ 270 (702)
T ss_pred CCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHH
Confidence 5789999999999999887631 12369999986554
Q ss_pred --HHHHHHcCCC-cEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhh--hhhHHHHHHHHHhcccCCeEEE
Q 021567 162 --RDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRW--RMVQRSLVEAVSDLLVHDGKVF 236 (311)
Q Consensus 162 --~~~a~~~~~~-Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~kr--Rl~~~~~l~~i~rvLkpGG~l~ 236 (311)
.+++...|+. .+.|.++|+.++.. +...+++|.|+.| .|+-+...... +.+.+.+.+ ..+.+.+|+.++
T Consensus 271 ~A~~N~~~~g~~~~i~~~~~D~~~~~~---~~~~~~~d~IvtN--PPYg~r~~~~~~l~~lY~~lg~-~lk~~~~g~~~~ 344 (702)
T PRK11783 271 AARKNARRAGVAELITFEVKDVADLKN---PLPKGPTGLVISN--PPYGERLGEEPALIALYSQLGR-RLKQQFGGWNAA 344 (702)
T ss_pred HHHHHHHHcCCCcceEEEeCChhhccc---ccccCCCCEEEEC--CCCcCccCchHHHHHHHHHHHH-HHHHhCCCCeEE
Confidence 4555556775 48999999988621 2123579999888 45433211111 112233333 333344999999
Q ss_pred EEeCcHHHHHHH
Q 021567 237 LQSDIEEVMLRM 248 (311)
Q Consensus 237 ~~tD~~~~~~~~ 248 (311)
+.|.+..+...+
T Consensus 345 llt~~~~l~~~~ 356 (702)
T PRK11783 345 LFSSSPELLSCL 356 (702)
T ss_pred EEeCCHHHHHHh
Confidence 888777655443
No 210
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.74 E-value=0.00015 Score=73.57 Aligned_cols=81 Identities=16% Similarity=0.157 Sum_probs=50.7
Q ss_pred CCeEEEEeccccHHHHHHHhhCC--------CCeEEEEchHHHHHHHHHH----cCCCcEEEEEccccchhhhhhccCCC
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRK--------DLNFLGLELVTHCRDSLQL----SGITNGYFIATNATSTFRSIVASYPG 193 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p--------~~~vvGiDi~~~a~~~a~~----~~~~Nv~f~~~Da~~ll~~~~~~~~~ 193 (311)
..+|||.|||+|.++..++++.+ ..+++|+|+.+.++..++. .+.-.+.....|.........+...+
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~ 111 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD 111 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence 45899999999999999987654 2578999998777665542 22112344444433210000111235
Q ss_pred cEeEEEEeCCCCCCC
Q 021567 194 KLILVSIQCPNPDFN 208 (311)
Q Consensus 194 s~D~V~i~fpdP~~k 208 (311)
.||.|+.| +||-+
T Consensus 112 ~fD~IIgN--PPy~~ 124 (524)
T TIGR02987 112 LFDIVITN--PPYGR 124 (524)
T ss_pred cccEEEeC--CCccc
Confidence 79999998 66654
No 211
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.73 E-value=0.00013 Score=68.74 Aligned_cols=76 Identities=11% Similarity=0.041 Sum_probs=58.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhCC-CCeEEEEchHHHHHHHHHHc--CCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTHCRDSLQLS--GITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~~~a~~~a~~~--~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
++..+||.+||.|.++..+++..| +..|+|+|.+..|++.+++. ..++++++++|..++.. .++..-.++|.|++.
T Consensus 19 pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~-~l~~~~~~vDgIl~D 97 (296)
T PRK00050 19 PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKE-VLAEGLGKVDGILLD 97 (296)
T ss_pred CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHH-HHHcCCCccCEEEEC
Confidence 356999999999999999999975 78999999988888777532 13589999999998743 332111278988654
No 212
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.70 E-value=8.5e-05 Score=69.95 Aligned_cols=126 Identities=18% Similarity=0.212 Sum_probs=75.0
Q ss_pred CCCeEEEEeccccHHHHHHHhh-------CCCCeEEEEchHHHHHHHHH----HcCC--CcEEEEEccccchhhhhhccC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK-------RKDLNFLGLELVTHCRDSLQ----LSGI--TNGYFIATNATSTFRSIVASY 191 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~-------~p~~~vvGiDi~~~a~~~a~----~~~~--~Nv~f~~~Da~~ll~~~~~~~ 191 (311)
.+.+|+|-+||+|.++.+..+. .+..+++|+|+...+...++ -++. .+..+.++|...... . ..
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~--~-~~ 122 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDK--F-IK 122 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHS--C-TS
T ss_pred ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccc--c-cc
Confidence 3568999999999999998874 46789999998765544332 2332 345688888765411 1 02
Q ss_pred CCcEeEEEEeCCCCCCCC--chhh-------------hhhhHHHHHHHHHhcccCCeEEEEEeCcHHH-----HHHHHHH
Q 021567 192 PGKLILVSIQCPNPDFNR--PEHR-------------WRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV-----MLRMKQQ 251 (311)
Q Consensus 192 ~~s~D~V~i~fpdP~~k~--~h~k-------------rRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~-----~~~~~~~ 251 (311)
...+|.|..+ .|+-.. .+.. +.-..-.|+..+.+.|++||++.+......+ ...+++.
T Consensus 123 ~~~~D~ii~N--PPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR~~ 200 (311)
T PF02384_consen 123 NQKFDVIIGN--PPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSSSEKKIRKY 200 (311)
T ss_dssp T--EEEEEEE----CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGSTHHHHHHHH
T ss_pred ccccccccCC--CCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccchHHHHHHH
Confidence 4789999998 343322 0000 0111236999999999999998776533222 2345555
Q ss_pred HHhc
Q 021567 252 FLEY 255 (311)
Q Consensus 252 l~~~ 255 (311)
+.+.
T Consensus 201 ll~~ 204 (311)
T PF02384_consen 201 LLEN 204 (311)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 5544
No 213
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.68 E-value=0.00031 Score=65.82 Aligned_cols=112 Identities=18% Similarity=0.299 Sum_probs=81.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCC-CCeEEEEchHHH----HHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~~~----a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++..|||.++|.|.=+..+|+... ...+++.|++.. ...++++.|..|+..+..|+........ ...||.|.
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~---~~~fd~Vl 161 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKP---ESKFDRVL 161 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHH---TTTEEEEE
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccccccc---ccccchhh
Confidence 467899999999999999999855 679999998543 4445566789999999999888743222 44699998
Q ss_pred EeCCCCCC----CCchhhhh--------h--hHHHHHHHHHhcc----cCCeEEEEEe
Q 021567 200 IQCPNPDF----NRPEHRWR--------M--VQRSLVEAVSDLL----VHDGKVFLQS 239 (311)
Q Consensus 200 i~fpdP~~----k~~h~krR--------l--~~~~~l~~i~rvL----kpGG~l~~~t 239 (311)
+.-|-... +.+..+++ + ++.++|+...+.+ ||||+++-+|
T Consensus 162 vDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsT 219 (283)
T PF01189_consen 162 VDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYST 219 (283)
T ss_dssp EECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEE
T ss_pred cCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEe
Confidence 87542211 11111111 1 2479999999999 9999999887
No 214
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.66 E-value=0.00022 Score=64.05 Aligned_cols=102 Identities=17% Similarity=0.124 Sum_probs=66.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc-C---CCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS-G---ITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~-~---~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
...+.||.|+|.|.++..+.... -..|--||.++.-++.|++. + ..-..+.+..++++. | .++.+|+|++
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~----P-~~~~YDlIW~ 128 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFT----P-EEGKYDLIWI 128 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG---------TT-EEEEEE
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhcc----C-CCCcEeEEEe
Confidence 35789999999999999886543 24788888877777777632 1 123677777777662 2 3579999999
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
+..--+..+. -+ -+||+++...|+|||.++++
T Consensus 129 QW~lghLTD~----dl--v~fL~RCk~~L~~~G~IvvK 160 (218)
T PF05891_consen 129 QWCLGHLTDE----DL--VAFLKRCKQALKPNGVIVVK 160 (218)
T ss_dssp ES-GGGS-HH----HH--HHHHHHHHHHEEEEEEEEEE
T ss_pred hHhhccCCHH----HH--HHHHHHHHHhCcCCcEEEEE
Confidence 9553321111 11 38899999999999999996
No 215
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.64 E-value=6.8e-05 Score=67.68 Aligned_cols=100 Identities=11% Similarity=-0.009 Sum_probs=76.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCC--cEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGIT--NGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~--Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
..+.++|||||-|.+...+..+. -.+++-+|+|..+++.++...-+ .+....+|-+.+ ++.++++|+|....
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~L-----df~ens~DLiisSl 145 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFL-----DFKENSVDLIISSL 145 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCCCceEEEEEecchhcc-----cccccchhhhhhhh
Confidence 35789999999999999998775 45789999998888877654322 255667786665 55799999998776
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.-.|.... +.-+.+++..|||+|.|+-+
T Consensus 146 slHW~NdL--------Pg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 146 SLHWTNDL--------PGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred hhhhhccC--------chHHHHHHHhcCCCccchhH
Confidence 66663221 57788899999999998753
No 216
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.62 E-value=0.00032 Score=67.22 Aligned_cols=97 Identities=15% Similarity=0.218 Sum_probs=77.8
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHH----HHHHHcCCCc-EEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~----~~a~~~~~~N-v~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||.=+|-|.|++.+|+..... |+++|+...|. ++++.++..+ +..+++|+..... ..+.+|.|+
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~-V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~-----~~~~aDrIi 261 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPK-VYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAP-----ELGVADRII 261 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCce-EEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhh-----ccccCCEEE
Confidence 48899999999999999999985433 99999876554 4555567776 8999999998832 127899999
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
++.|.-- ..|+....+.+++||.+++.+
T Consensus 262 m~~p~~a------------~~fl~~A~~~~k~~g~iHyy~ 289 (341)
T COG2520 262 MGLPKSA------------HEFLPLALELLKDGGIIHYYE 289 (341)
T ss_pred eCCCCcc------------hhhHHHHHHHhhcCcEEEEEe
Confidence 9976421 378999999999999999864
No 217
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.61 E-value=0.0002 Score=59.33 Aligned_cols=55 Identities=20% Similarity=0.337 Sum_probs=43.9
Q ss_pred eEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHH----HHHHHcCCCcEEEEEccccc
Q 021567 128 LVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGITNGYFIATNATS 182 (311)
Q Consensus 128 ~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~----~~a~~~~~~Nv~f~~~Da~~ 182 (311)
++||||||.|.++..+++..|..+++++|..+.+. ++++.++.+|+.+++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 48999999999999999999988999999765444 44444567788888877654
No 218
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.60 E-value=0.00012 Score=68.83 Aligned_cols=102 Identities=16% Similarity=0.115 Sum_probs=66.0
Q ss_pred CeEEEEeccccHHHHHHH----hhCC----CCeEEEEchHHHHHHHHHHcC-----------------------------
Q 021567 127 PLVVDIGSGNGLFLLGMA----RKRK----DLNFLGLELVTHCRDSLQLSG----------------------------- 169 (311)
Q Consensus 127 ~~vLDIGcGtG~~~~~lA----~~~p----~~~vvGiDi~~~a~~~a~~~~----------------------------- 169 (311)
-+|+..||+||+=.-.+| +..+ +..++|.|++..++++|++.-
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 589999999998544433 2221 468999999988888876320
Q ss_pred -----C-CcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 170 -----I-TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 170 -----~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
+ ..|.|.+.|+.+. .++ ..+.||+|+....-..+.. -.+.++++.+++.|+|||.|++-
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~---~~~-~~~~fD~I~cRNvliyF~~------~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAK---QWA-VPGPFDAIFCRNVMIYFDK------TTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEChHHHccCEEEcccCCCC---CCc-cCCCcceeeHhhHHhcCCH------HHHHHHHHHHHHHhCCCcEEEEe
Confidence 0 2356666666542 111 2578999875211111111 12358899999999999998874
No 219
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.58 E-value=9.4e-05 Score=65.72 Aligned_cols=102 Identities=16% Similarity=0.149 Sum_probs=60.0
Q ss_pred CCeEEEEeccccHHHHHHH----h---h-CC-CCeEEEEchHHHHHHHHHHc-----------------------C----
Q 021567 126 QPLVVDIGSGNGLFLLGMA----R---K-RK-DLNFLGLELVTHCRDSLQLS-----------------------G---- 169 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA----~---~-~p-~~~vvGiDi~~~a~~~a~~~-----------------------~---- 169 (311)
.-+|+-.||+||+=.-.|| + . .+ +..++|.|++..++++|++. +
T Consensus 32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~ 111 (196)
T PF01739_consen 32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR 111 (196)
T ss_dssp -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence 4589999999998544443 3 1 12 46999999998888876521 1
Q ss_pred -----CCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 170 -----ITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 170 -----~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
-++|.|.+.|+.+. +...+.+|+|+.--.--.+.. -.+.+.++.+++.|+|||.|++-
T Consensus 112 v~~~lr~~V~F~~~NL~~~-----~~~~~~fD~I~CRNVlIYF~~------~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 112 VKPELRKMVRFRRHNLLDP-----DPPFGRFDLIFCRNVLIYFDP------ETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp E-HHHHTTEEEEE--TT-S-----------EEEEEE-SSGGGS-H------HHHHHHHHHHGGGEEEEEEEEE-
T ss_pred EChHHcCceEEEecccCCC-----CcccCCccEEEecCEEEEeCH------HHHHHHHHHHHHHcCCCCEEEEe
Confidence 02578888887762 124678999975421111111 13368999999999999999985
No 220
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.53 E-value=0.00067 Score=64.66 Aligned_cols=108 Identities=9% Similarity=0.070 Sum_probs=68.3
Q ss_pred CCCeEEEEeccccHHHHHHHhh----CCCCeEEEEchHHHHHHHHHH----cCCCcEEE--EEccccchhhhhhccC--C
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK----RKDLNFLGLELVTHCRDSLQL----SGITNGYF--IATNATSTFRSIVASY--P 192 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~----~p~~~vvGiDi~~~a~~~a~~----~~~~Nv~f--~~~Da~~ll~~~~~~~--~ 192 (311)
++..++|+|||+|.=+..|.+. .....|++||+|..+++.+.+ ...+++.+ +++|-.+.+. +++.+ .
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~-~l~~~~~~ 154 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLA-WLKRPENR 154 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHh-hccccccc
Confidence 3568999999999987665543 235789999998777666543 34456666 7888777543 22211 1
Q ss_pred CcEeEEEEe---CCCCCCCCchhhhhhhHHHHHHHHHh-cccCCeEEEEEeCc
Q 021567 193 GKLILVSIQ---CPNPDFNRPEHRWRMVQRSLVEAVSD-LLVHDGKVFLQSDI 241 (311)
Q Consensus 193 ~s~D~V~i~---fpdP~~k~~h~krRl~~~~~l~~i~r-vLkpGG~l~~~tD~ 241 (311)
.....+++. +.|- .+ .-...||+++++ .|+|||.|.+..|-
T Consensus 155 ~~~r~~~flGSsiGNf-----~~---~ea~~fL~~~~~~~l~~~d~lLiG~D~ 199 (319)
T TIGR03439 155 SRPTTILWLGSSIGNF-----SR---PEAAAFLAGFLATALSPSDSFLIGLDG 199 (319)
T ss_pred CCccEEEEeCccccCC-----CH---HHHHHHHHHHHHhhCCCCCEEEEecCC
Confidence 222333221 1111 00 112489999999 99999999997653
No 221
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.43 E-value=0.0023 Score=57.10 Aligned_cols=104 Identities=16% Similarity=0.184 Sum_probs=68.9
Q ss_pred CCCeEEEEeccccHHHHHHHhh-CCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchh--hhhhc-cCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTF--RSIVA-SYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~-~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll--~~~~~-~~~~s~D~V~i 200 (311)
++..|+|||+..|.++..++++ .+...++|+|+.+. ..+.+|.++++|+.+-- ..+.. .....+|+|..
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~-------~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~s 117 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM-------KPIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLS 117 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc-------ccCCCceEEeeeccCccHHHHHHHHcCCCCcceEEe
Confidence 4789999999999999999988 44556999998552 22467999999987631 11111 12344788865
Q ss_pred eCCCCCCCCc-----hhhhhhhH--HHHHHHHHhcccCCeEEEEEe
Q 021567 201 QCPNPDFNRP-----EHRWRMVQ--RSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 201 ~fpdP~~k~~-----h~krRl~~--~~~l~~i~rvLkpGG~l~~~t 239 (311)
. +-|+.. +|- |.+. ...++-...+|+|||.+.+..
T Consensus 118 D---~ap~~~g~~~~Dh~-r~~~L~~~a~~~a~~vL~~~G~fv~K~ 159 (205)
T COG0293 118 D---MAPNTSGNRSVDHA-RSMYLCELALEFALEVLKPGGSFVAKV 159 (205)
T ss_pred c---CCCCcCCCccccHH-HHHHHHHHHHHHHHHeeCCCCeEEEEE
Confidence 4 222211 111 2222 455667788999999999763
No 222
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.43 E-value=0.00047 Score=61.74 Aligned_cols=102 Identities=13% Similarity=0.048 Sum_probs=74.6
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcC---CCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG---ITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~---~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
++.+||+||+|-|.....+.++.|..+ +-||--....++.+..| -.||..+.+-.++.++.+ +|+.||.|+..
T Consensus 101 kggrvLnVGFGMgIidT~iQe~~p~~H-~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L---~d~~FDGI~yD 176 (271)
T KOG1709|consen 101 KGGRVLNVGFGMGIIDTFIQEAPPDEH-WIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTL---PDKHFDGIYYD 176 (271)
T ss_pred CCceEEEeccchHHHHHHHhhcCCcce-EEEecCHHHHHHHHhcccccccceEEEecchHhhhccc---cccCcceeEee
Confidence 578999999999999999988887665 44776566666666544 368999999988886542 58889999765
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
-=.|. .. -...|.+.+.|+|||+|++.+.
T Consensus 177 Ty~e~-----yE---dl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 177 TYSEL-----YE---DLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred chhhH-----HH---HHHHHHHHHhhhcCCCceEEEe
Confidence 11111 10 1136777889999999999874
No 223
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.42 E-value=0.0025 Score=57.03 Aligned_cols=114 Identities=15% Similarity=0.268 Sum_probs=78.5
Q ss_pred EEEEeccccHHHHHHHhhCCCCeEEEEchHH----HHHHHHHHcCC-CcEEEEEccccchhhhhhccCCCc-EeEEEEeC
Q 021567 129 VVDIGSGNGLFLLGMARKRKDLNFLGLELVT----HCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGK-LILVSIQC 202 (311)
Q Consensus 129 vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~----~a~~~a~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s-~D~V~i~f 202 (311)
|.||||-.|.+.+.|.++..-..++++|+++ .|.+.++..++ +.+.+..+|....++ ++. +|.|++--
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~------~~e~~d~ivIAG 74 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLK------PGEDVDTIVIAG 74 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--------GGG---EEEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccC------CCCCCCEEEEec
Confidence 6899999999999999998777999999864 55555666675 459999999877632 333 78887651
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCce
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~ 260 (311)
. .- .+-.++|++....++..-.|+++.... ...+++.+.++||...
T Consensus 75 M--------GG--~lI~~ILe~~~~~~~~~~~lILqP~~~--~~~LR~~L~~~gf~I~ 120 (205)
T PF04816_consen 75 M--------GG--ELIIEILEAGPEKLSSAKRLILQPNTH--AYELRRWLYENGFEII 120 (205)
T ss_dssp E---------H--HHHHHHHHHTGGGGTT--EEEEEESS---HHHHHHHHHHTTEEEE
T ss_pred C--------CH--HHHHHHHHhhHHHhccCCeEEEeCCCC--hHHHHHHHHHCCCEEE
Confidence 1 00 122578888888888878999987654 4478888999998654
No 224
>PRK00536 speE spermidine synthase; Provisional
Probab=97.41 E-value=0.0018 Score=60.05 Aligned_cols=108 Identities=9% Similarity=-0.069 Sum_probs=75.0
Q ss_pred CCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH--------cCCCcEEEEEccccchhhhhhccCCCcE
Q 021567 124 PAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL--------SGITNGYFIATNATSTFRSIVASYPGKL 195 (311)
Q Consensus 124 ~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~--------~~~~Nv~f~~~Da~~ll~~~~~~~~~s~ 195 (311)
++..+||=||-|-|..+..+.+. |. +++-||+.+...+.+++ ..-++++++. .+ . ....+++
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~----~~-~---~~~~~~f 140 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK----QL-L---DLDIKKY 140 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee----hh-h---hccCCcC
Confidence 35689999999999999999986 44 89999986655544443 1224577764 12 1 1124789
Q ss_pred eEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHH----HHHHHHHHHh
Q 021567 196 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV----MLRMKQQFLE 254 (311)
Q Consensus 196 D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~----~~~~~~~l~~ 254 (311)
|+|++...++ ++|.+.+++.|+|||.+..++.+..+ +..+.+.+.+
T Consensus 141 DVIIvDs~~~-------------~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~ 190 (262)
T PRK00536 141 DLIICLQEPD-------------IHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGD 190 (262)
T ss_pred CEEEEcCCCC-------------hHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHh
Confidence 9998873322 48999999999999999998765433 3444555554
No 225
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.39 E-value=0.00036 Score=62.39 Aligned_cols=100 Identities=15% Similarity=0.153 Sum_probs=53.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHH-------HHHHHH----HcC--CCcEEEEEccccchh--hhhhc
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH-------CRDSLQ----LSG--ITNGYFIATNATSTF--RSIVA 189 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~-------a~~~a~----~~~--~~Nv~f~~~Da~~ll--~~~~~ 189 (311)
+...++|||||.|...++.|-..+-...+|||+.+. +.+..+ ..| ...+.+.++|..+.. ...+
T Consensus 42 ~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~- 120 (205)
T PF08123_consen 42 PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIW- 120 (205)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHG-
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhh-
Confidence 468999999999999999998876667999997432 122211 223 356888999876531 1111
Q ss_pred cCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 190 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 190 ~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
..-|+|++|-- -|.. -+ ..-|.+....||+|-+++-
T Consensus 121 ---s~AdvVf~Nn~--~F~~------~l-~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 121 ---SDADVVFVNNT--CFDP------DL-NLALAELLLELKPGARIIS 156 (205)
T ss_dssp ---HC-SEEEE--T--TT-H------HH-HHHHHHHHTTS-TT-EEEE
T ss_pred ---cCCCEEEEecc--ccCH------HH-HHHHHHHHhcCCCCCEEEE
Confidence 24578887611 1100 01 1334666678899988753
No 226
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.32 E-value=0.00086 Score=62.36 Aligned_cols=98 Identities=13% Similarity=0.096 Sum_probs=64.3
Q ss_pred CCeEEEEeccccHH----HHHHHhhCC-----CCeEEEEchHHHHHHHHHHcCC--------------------------
Q 021567 126 QPLVVDIGSGNGLF----LLGMARKRK-----DLNFLGLELVTHCRDSLQLSGI-------------------------- 170 (311)
Q Consensus 126 ~~~vLDIGcGtG~~----~~~lA~~~p-----~~~vvGiDi~~~a~~~a~~~~~-------------------------- 170 (311)
.-+|.-+||+||+= ++.+++..| ..+++|.|++..++++|+..-.
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 45899999999974 333344454 5799999998888777652100
Q ss_pred -------CcEEEEEccccchhhhhhccCCCcEeEEEE----eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 171 -------TNGYFIATNATSTFRSIVASYPGKLILVSI----QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 171 -------~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i----~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
++|.|-+.|+.+- . ...+.||+|++ .|-|. -.+.++++.++..|+|||.|++-
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~---~--~~~~~fD~IfCRNVLIYFd~----------~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDD---S--PFLGKFDLIFCRNVLIYFDE----------ETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEChHHhcccEEeecCCCCC---c--cccCCCCEEEEcceEEeeCH----------HHHHHHHHHHHHHhCCCCEEEEc
Confidence 1344555544332 1 13567888752 22222 14468999999999999999984
No 227
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.28 E-value=0.0029 Score=61.36 Aligned_cols=108 Identities=15% Similarity=0.123 Sum_probs=76.7
Q ss_pred CeEEEEeccccHHHHHHHhhCCC--------------------------------C-------eEEEEchH----HHHHH
Q 021567 127 PLVVDIGSGNGLFLLGMARKRKD--------------------------------L-------NFLGLELV----THCRD 163 (311)
Q Consensus 127 ~~vLDIGcGtG~~~~~lA~~~p~--------------------------------~-------~vvGiDi~----~~a~~ 163 (311)
..++|==||+|++++..|...++ . .++|+|+. +.|..
T Consensus 193 ~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~ 272 (381)
T COG0116 193 EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKA 272 (381)
T ss_pred CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHH
Confidence 56999999999999999887642 1 37899975 45666
Q ss_pred HHHHcCC-CcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhh--hhhhHHHHHHHHHhcccCCeEEEEEeC
Q 021567 164 SLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHR--WRMVQRSLVEAVSDLLVHDGKVFLQSD 240 (311)
Q Consensus 164 ~a~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~k--rRl~~~~~l~~i~rvLkpGG~l~~~tD 240 (311)
++++.|+ +-|.|.++|+..+ .. +-.++|.|+.| .|+=..-..+ -.-+++.|.+.+++.++--+.++|.|+
T Consensus 273 NA~~AGv~d~I~f~~~d~~~l-~~----~~~~~gvvI~N--PPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 273 NARAAGVGDLIEFKQADATDL-KE----PLEEYGVVISN--PPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred HHHhcCCCceEEEEEcchhhC-CC----CCCcCCEEEeC--CCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 6666776 4599999999987 21 12688999888 4442221111 112347888888899988889988774
Q ss_pred c
Q 021567 241 I 241 (311)
Q Consensus 241 ~ 241 (311)
-
T Consensus 346 e 346 (381)
T COG0116 346 E 346 (381)
T ss_pred H
Confidence 3
No 228
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.14 E-value=0.015 Score=52.57 Aligned_cols=124 Identities=17% Similarity=0.140 Sum_probs=84.8
Q ss_pred CCCeEEEEeccccHHHHHHHhh-CCCCeEEEEchHHHHHHHHH--HcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTHCRDSLQ--LSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~-~p~~~vvGiDi~~~a~~~a~--~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
++..||-+|.++|+....++.- .|+..|.+||.+.+..+.+- ...-+|+--+.+||..-.. ...--+.+|.|+..
T Consensus 73 ~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~--Y~~lv~~VDvI~~D 150 (229)
T PF01269_consen 73 PGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEK--YRMLVEMVDVIFQD 150 (229)
T ss_dssp TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGG--GTTTS--EEEEEEE
T ss_pred CCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHH--hhcccccccEEEec
Confidence 4789999999999999999987 56889999998765444331 1223699999999987521 11123589999887
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe---------CcHHHHHHHHHHHHhcCCCce
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS---------DIEEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t---------D~~~~~~~~~~~l~~~g~~~~ 260 (311)
..-|. ..+-++.....-||+||.+++.. +....+..-.+.+++.++...
T Consensus 151 VaQp~----------Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~ 208 (229)
T PF01269_consen 151 VAQPD----------QARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPL 208 (229)
T ss_dssp -SSTT----------HHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEE
T ss_pred CCChH----------HHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChh
Confidence 65552 11356667778899999988752 345566677777888777654
No 229
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.10 E-value=0.005 Score=59.22 Aligned_cols=126 Identities=15% Similarity=0.171 Sum_probs=92.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhCC-CCeEEEEchHHHHHHHHH---------HcCC--CcEEEEEccccchhhhhhccCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTHCRDSLQ---------LSGI--TNGYFIATNATSTFRSIVASYP 192 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~~~a~~~a~---------~~~~--~Nv~f~~~Da~~ll~~~~~~~~ 192 (311)
....+|=+|-|.|--+.++.+ +| -.+++-+|+..++++-++ ++.. ++++.+..||.+.++. ..
T Consensus 289 ~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~----a~ 363 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRT----AA 363 (508)
T ss_pred ccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHh----hc
Confidence 467899999999998888876 57 558999997655544332 1222 4699999999998654 35
Q ss_pred CcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHH----HHHHHHHHHhcCCC
Q 021567 193 GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV----MLRMKQQFLEYGKG 258 (311)
Q Consensus 193 ~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~----~~~~~~~l~~~g~~ 258 (311)
..+|.|++.+|||.-. .--|+-+.+|...++|.|+++|.++++..+.-+ +=.+...+++.|+.
T Consensus 364 ~~fD~vIVDl~DP~tp---s~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~~ 430 (508)
T COG4262 364 DMFDVVIVDLPDPSTP---SIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAGYR 430 (508)
T ss_pred ccccEEEEeCCCCCCc---chhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHhCcce
Confidence 6899999999999521 233666789999999999999999998654322 22345677788764
No 230
>PLN03034 phosphoglycerate kinase; Provisional
Probab=97.10 E-value=0.001 Score=66.10 Aligned_cols=102 Identities=32% Similarity=0.537 Sum_probs=74.1
Q ss_pred eeeccCCc-----hhhHhhhhceeEEEcccc-ccccccccchhHHHHHHHhhhhcCceeEEEcchhhHHHHHh--hccch
Q 021567 9 LSILGQGP-----WKRLLLQLQNVIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAK--VSSSI 80 (311)
Q Consensus 9 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~s~ 80 (311)
..++--|| +++.+.+||.|+|-||.- |.+ +++..|...|++.++.++..+|--++.|.-.++++.. +.+..
T Consensus 370 ~~~lDIGp~Ti~~~~~~i~~akTI~WNGPmGvFE~-~~Fa~GT~~l~~aia~~~~~~a~sIvGGGDt~aAi~~~g~~~~~ 448 (481)
T PLN03034 370 WMGLDIGPDSVKTFNEALDTTQTVIWNGPMGVFEF-EKFAVGTEAVAKKLAELSGKGVTTIIGGGDSVAAVEKVGVADVM 448 (481)
T ss_pred CEEEecCHHHHHHHHHHHhhCCEEEEECCcccccC-CcchHHHHHHHHHHHHhhcCCCeEEEcCcHHHHHHHHcCCccce
Confidence 44555666 678999999999999997 887 8899999999999999886655444444444444443 32221
Q ss_pred hhhhhhhhhhhhhhhhhhccCCCchhhhhhCCC
Q 021567 81 FGLNMVESGSAVWEFLKGRMLPGVSALDRAFPF 113 (311)
Q Consensus 81 ~~~~~fe~~a~~wd~~~~r~~~~~~~l~~~~~~ 113 (311)
. | ...+....++++-|+..|+..++++.+|.
T Consensus 449 s-h-iSTGGGA~Le~LeGk~LPgv~aL~~~~~~ 479 (481)
T PLN03034 449 S-H-ISTGGGASLELLEGKELPGVVALDEATPV 479 (481)
T ss_pred e-E-EeCcHHHHHHHHcCCCCcHHHHHhhcCCc
Confidence 1 1 23446889999999999999888776653
No 231
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.05 E-value=0.002 Score=59.61 Aligned_cols=70 Identities=13% Similarity=0.175 Sum_probs=53.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc--CC---CcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--GI---TNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~--~~---~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
+...|||||.|||..+..|.+. ..+|+++|+..++...+++. |. ..+.+++||.... +...||.++
T Consensus 58 ~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~-------d~P~fd~cV 128 (315)
T KOG0820|consen 58 PTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKT-------DLPRFDGCV 128 (315)
T ss_pred CCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccC-------CCcccceee
Confidence 4689999999999999999988 67999999877666555442 33 3599999998876 134567766
Q ss_pred EeCC
Q 021567 200 IQCP 203 (311)
Q Consensus 200 i~fp 203 (311)
.|.|
T Consensus 129 sNlP 132 (315)
T KOG0820|consen 129 SNLP 132 (315)
T ss_pred ccCC
Confidence 6543
No 232
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.05 E-value=0.0043 Score=64.69 Aligned_cols=121 Identities=15% Similarity=0.111 Sum_probs=78.6
Q ss_pred CCeEEEEeccccHHHHHHHhhC-------C-----CCeEEEEch---HHHHHHHH--------------HH------cCC
Q 021567 126 QPLVVDIGSGNGLFLLGMARKR-------K-----DLNFLGLEL---VTHCRDSL--------------QL------SGI 170 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~-------p-----~~~vvGiDi---~~~a~~~a--------------~~------~~~ 170 (311)
.-+|+|+|.|+|...+...+.+ | ..+++++|. +..-+.++ .+ .|.
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 4689999999999877665433 3 358999993 21111111 10 122
Q ss_pred -------C--cEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc
Q 021567 171 -------T--NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 241 (311)
Q Consensus 171 -------~--Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~ 241 (311)
. ++.++.+|+.+.+..+ +..+|.+++.-=.| .+.+ .+=++++++.++++++|||.+.-.|
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~----~~~~d~~~lD~FsP---~~np--~~W~~~~~~~l~~~~~~~~~~~t~t-- 206 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQL----DARADAWFLDGFAP---AKNP--DMWSPNLFNALARLARPGATLATFT-- 206 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhc----cccccEEEeCCCCC---ccCh--hhccHHHHHHHHHHhCCCCEEEEee--
Confidence 1 4667889998876532 35689998751112 0100 1334799999999999999998555
Q ss_pred HHHHHHHHHHHHhcCCCc
Q 021567 242 EEVMLRMKQQFLEYGKGK 259 (311)
Q Consensus 242 ~~~~~~~~~~l~~~g~~~ 259 (311)
-...+...|.+.|+..
T Consensus 207 --~a~~vr~~l~~~GF~v 222 (662)
T PRK01747 207 --SAGFVRRGLQEAGFTV 222 (662)
T ss_pred --hHHHHHHHHHHcCCee
Confidence 4557788888998864
No 233
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.05 E-value=0.003 Score=57.39 Aligned_cols=149 Identities=17% Similarity=0.090 Sum_probs=90.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe--C
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ--C 202 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~--f 202 (311)
.+.++||||..||.|+..+.++. ..+|+|+|.....+..--++...-+.+...|+..+.+..+ .+..|.+++. |
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~---~~~~d~~v~DvSF 154 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDF---TEKPDLIVIDVSF 154 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHc---ccCCCeEEEEeeh
Confidence 57899999999999999999874 4689999975433322222333335666788887754433 2355555543 3
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceeeeccccccccCCCCCCCCCCC
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSF 282 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~~~d~y~~~~~~~~~~~~~~~ 282 (311)
.. -...|..+..+|+|+|.+..- ..+.||...+.+...|. + +|. ....
T Consensus 155 IS-------------L~~iLp~l~~l~~~~~~~v~L--vKPQFEagr~~v~kkGv----v-~d~------------~~~~ 202 (245)
T COG1189 155 IS-------------LKLILPALLLLLKDGGDLVLL--VKPQFEAGREQVGKKGV----V-RDP------------KLHA 202 (245)
T ss_pred hh-------------HHHHHHHHHHhcCCCceEEEE--ecchhhhhhhhcCcCce----e-cCc------------chHH
Confidence 21 147788889999999887763 34566666665543322 1 110 1112
Q ss_pred CCCCHHHHHHHHcCCCeEEEEEEeCCC
Q 021567 283 GVRSDWEQHVIDRGAPMYRLMLSKPSC 309 (311)
Q Consensus 283 ~~~T~yE~~~~~~G~~i~~~~~~k~~~ 309 (311)
.+..+.++...+.|..+.-+....+.+
T Consensus 203 ~v~~~i~~~~~~~g~~~~gl~~Spi~G 229 (245)
T COG1189 203 EVLSKIENFAKELGFQVKGLIKSPIKG 229 (245)
T ss_pred HHHHHHHHHHhhcCcEEeeeEccCccC
Confidence 334555555556666666665555544
No 234
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.02 E-value=0.01 Score=52.23 Aligned_cols=122 Identities=18% Similarity=0.225 Sum_probs=72.6
Q ss_pred CCCeEEEEeccccHHHHHHHhh-CCCCeEEEEchHHHHHHHHHHcCCCcEEEEEc-cccchh--hhhhc-cCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTHCRDSLQLSGITNGYFIAT-NATSTF--RSIVA-SYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~-~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~-Da~~ll--~~~~~-~~~~s~D~V~ 199 (311)
++.+|||+||..|.++.-.-++ +|+..++|||+... ..+..+.++++ |+.+-. ..++. .++..+|.|.
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVl 141 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-------EPPEGATIIQGNDVTDPETYRKIFEALPNRPVDVVL 141 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-------cCCCCcccccccccCCHHHHHHHHHhCCCCcccEEE
Confidence 4789999999999999888777 69999999997421 11234455555 555431 11221 2467889887
Q ss_pred EeC-CCCCC-CCchhhhhhhH--HHHHHHHHhcccCCeEEEEEe----CcHHHHHHHHHHHHh
Q 021567 200 IQC-PNPDF-NRPEHRWRMVQ--RSLVEAVSDLLVHDGKVFLQS----DIEEVMLRMKQQFLE 254 (311)
Q Consensus 200 i~f-pdP~~-k~~h~krRl~~--~~~l~~i~rvLkpGG~l~~~t----D~~~~~~~~~~~l~~ 254 (311)
..+ |++-- ..+.| -|++. .+.+--....++|+|.|++++ +...+...|.+.++.
T Consensus 142 SDMapnaTGvr~~Dh-~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~~f~~ 203 (232)
T KOG4589|consen 142 SDMAPNATGVRIRDH-YRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQAVFTN 203 (232)
T ss_pred eccCCCCcCcchhhH-HHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHHHHhhh
Confidence 654 33310 01111 12332 234444456788999999875 233444455555443
No 235
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.02 E-value=0.0013 Score=54.95 Aligned_cols=58 Identities=26% Similarity=0.390 Sum_probs=42.9
Q ss_pred CCCeEEEEeccccHHHHHHHh-----hCCCCeEEEEchH----HHHHHHHHHcC--C-CcEEEEEccccch
Q 021567 125 AQPLVVDIGSGNGLFLLGMAR-----KRKDLNFLGLELV----THCRDSLQLSG--I-TNGYFIATNATST 183 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~-----~~p~~~vvGiDi~----~~a~~~a~~~~--~-~Nv~f~~~Da~~l 183 (311)
+...|+|+|||.|.++..|+. . ++.+++|||.. +.+.+++++.+ . .++.+..++..+.
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADE 94 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhh
Confidence 457899999999999999998 4 78999999964 44555554444 3 5677777665543
No 236
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=96.99 E-value=0.00097 Score=64.63 Aligned_cols=94 Identities=16% Similarity=0.165 Sum_probs=67.6
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHH----HHHHHHHcCCCc-EEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~----a~~~a~~~~~~N-v~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
+..++|+|||-|......+.- ....++|+|.+.. +...+...+++| ..++.+|.... |++++++|.+.+
T Consensus 111 ~~~~~~~~~g~~~~~~~i~~f-~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~-----~fedn~fd~v~~ 184 (364)
T KOG1269|consen 111 GSKVLDVGTGVGGPSRYIAVF-KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKM-----PFEDNTFDGVRF 184 (364)
T ss_pred cccccccCcCcCchhHHHHHh-ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcC-----CCCccccCcEEE
Confidence 457999999999999999874 4678999997532 222223334433 33467777665 557899999876
Q ss_pred e-----CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 201 Q-----CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 201 ~-----fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
+ -|++ ..+++|++|+++|||++...
T Consensus 185 ld~~~~~~~~-------------~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 185 LEVVCHAPDL-------------EKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred EeecccCCcH-------------HHHHHHHhcccCCCceEEeH
Confidence 5 2333 38899999999999999873
No 237
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=96.98 E-value=0.011 Score=54.63 Aligned_cols=92 Identities=14% Similarity=0.150 Sum_probs=64.0
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc--CCCcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--GITNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~--~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
++..|||||+|+|.++..|++.. .+++++|......+.+++. ..+|+.++.+|+..+-.... ....-..|+.|.
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~--~~~~~~~vv~Nl 105 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDL--LKNQPLLVVGNL 105 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGH--CSSSEEEEEEEE
T ss_pred CCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHh--hcCCceEEEEEe
Confidence 46789999999999999999986 7999999987777776653 34799999999998721100 123455666775
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccC
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVH 231 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkp 231 (311)
|- -+...++.++...-+.
T Consensus 106 Py-----------~is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 106 PY-----------NISSPILRKLLELYRF 123 (262)
T ss_dssp TG-----------TGHHHHHHHHHHHGGG
T ss_pred cc-----------cchHHHHHHHhhcccc
Confidence 42 1334666666664444
No 238
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=96.75 E-value=0.011 Score=51.02 Aligned_cols=126 Identities=17% Similarity=0.141 Sum_probs=77.4
Q ss_pred EeccccHHHHHHHhhCC-CCeEEEEchH---------HHHHHHHHHcCCCcEE-EEEccccchhhhhhccCCCcEeEEEE
Q 021567 132 IGSGNGLFLLGMARKRK-DLNFLGLELV---------THCRDSLQLSGITNGY-FIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 132 IGcGtG~~~~~lA~~~p-~~~vvGiDi~---------~~a~~~a~~~~~~Nv~-f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
+|=|.=.|+..||+.+. ..++++.-.. ..+..+++...-.++. ..-.||..+ ...+......||.|+.
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l-~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKL-HKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcc-cccccccCCcCCEEEE
Confidence 56677777888888866 6677766531 1233333322222333 346788887 3333335688999999
Q ss_pred eCCCCCCCCchh-----hhhhhHHHHHHHHHhcccCCeEEEEEe-CcHHHHHHHHHHH-HhcCCC
Q 021567 201 QCPNPDFNRPEH-----RWRMVQRSLVEAVSDLLVHDGKVFLQS-DIEEVMLRMKQQF-LEYGKG 258 (311)
Q Consensus 201 ~fpdP~~k~~h~-----krRl~~~~~l~~i~rvLkpGG~l~~~t-D~~~~~~~~~~~l-~~~g~~ 258 (311)
|||-.--...+. +.|.+-..|++.+.++|+++|.+++.- +.++|-.|-++.+ .+.|+.
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~~gl~ 146 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAEAGLV 146 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHhcCCE
Confidence 999664111111 112233799999999999999999853 4456666666555 445554
No 239
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.66 E-value=0.046 Score=48.77 Aligned_cols=123 Identities=16% Similarity=0.129 Sum_probs=88.9
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHH----HHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~----~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
++..||=+|..+|+.....+.-.++..+.|||.+.+..+ .+++ -+|+--+.+||..-.. . ..--+.+|+|+.
T Consensus 76 ~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~--R~Ni~PIL~DA~~P~~-Y-~~~Ve~VDviy~ 151 (231)
T COG1889 76 EGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK--RPNIIPILEDARKPEK-Y-RHLVEKVDVIYQ 151 (231)
T ss_pred CCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh--CCCceeeecccCCcHH-h-hhhcccccEEEE
Confidence 578999999999999999999988889999998754433 3333 3699999999987521 1 112356899987
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE---------eCcHHHHHHHHHHHHhcCCCcee
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ---------SDIEEVMLRMKQQFLEYGKGKLV 261 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~---------tD~~~~~~~~~~~l~~~g~~~~~ 261 (311)
....|. ..+-+...+..-||+||.+++. .|-+..++..++.+++.++..+.
T Consensus 152 DVAQp~----------Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e 211 (231)
T COG1889 152 DVAQPN----------QAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILE 211 (231)
T ss_pred ecCCch----------HHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeE
Confidence 655442 1135667778889999966653 25567788788888888876553
No 240
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=96.65 E-value=0.027 Score=55.17 Aligned_cols=112 Identities=15% Similarity=0.181 Sum_probs=79.8
Q ss_pred CCCeEEEEeccccHHHHHHHhh-CCCCeEEEEchHHH----HHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~-~p~~~vvGiDi~~~----a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
++.+|||.++..|.=+..+|.. .-...+++.|.... ...++.+.|.+|...+..|...+-...| .++||.|.
T Consensus 241 ~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~---~~~fDRVL 317 (460)
T KOG1122|consen 241 PGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEF---PGSFDRVL 317 (460)
T ss_pred CCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCccccccccc---Ccccceee
Confidence 5789999999999999999876 33568999997543 3345566789999999999987633333 34999998
Q ss_pred EeCCC---------CCCCCchhh-----hhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCPN---------PDFNRPEHR-----WRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fpd---------P~~k~~h~k-----rRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+.-|- +-.+..... .-.+++++|....+.+++||+|+-+|
T Consensus 318 LDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST 371 (460)
T KOG1122|consen 318 LDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST 371 (460)
T ss_pred ecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence 76442 222211100 12345899999999999999999875
No 241
>KOG2730 consensus Methylase [General function prediction only]
Probab=96.62 E-value=0.0033 Score=56.55 Aligned_cols=72 Identities=15% Similarity=0.145 Sum_probs=51.8
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHH----HHHHHHHcCCC-cEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~----a~~~a~~~~~~-Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
.+.|+|.-||-|..+++.|.++| .|++||++.. |..+++-.|++ .|.|++||..++...+ .++...+|.|+.
T Consensus 95 ~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~l-q~~K~~~~~vf~ 171 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKL-KADKIKYDCVFL 171 (263)
T ss_pred cchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHH-hhhhheeeeeec
Confidence 57899999999999999999975 7899998654 33344445664 6999999999986542 223334555543
No 242
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.55 E-value=0.0093 Score=57.23 Aligned_cols=86 Identities=12% Similarity=0.103 Sum_probs=61.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
++..+|||||++|.++..|+++ +..|+|||....+ ..+ ...++|..+.+|..... | ..+.+|.++.....
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~-~~L--~~~~~V~h~~~d~fr~~----p-~~~~vDwvVcDmve 280 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMA-QSL--MDTGQVEHLRADGFKFR----P-PRKNVDWLVCDMVE 280 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcC-Hhh--hCCCCEEEEeccCcccC----C-CCCCCCEEEEeccc
Confidence 4789999999999999999998 5699999954422 222 23367999999987762 2 25678999877543
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCC
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHD 232 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpG 232 (311)
.- .+..+.+.++|..|
T Consensus 281 ~P------------~rva~lm~~Wl~~g 296 (357)
T PRK11760 281 KP------------ARVAELMAQWLVNG 296 (357)
T ss_pred CH------------HHHHHHHHHHHhcC
Confidence 21 25566667777665
No 243
>PLN02282 phosphoglycerate kinase
Probab=96.44 E-value=0.0058 Score=59.82 Aligned_cols=97 Identities=25% Similarity=0.401 Sum_probs=69.4
Q ss_pred eeccCCc-----hhhHhhhhceeEEEccccccccccccchhHHHHHHHhhhhcCce-eEEEcchhhHHHHH-hhccchhh
Q 021567 10 SILGQGP-----WKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTC-NVTVIGSMACKAIA-KVSSSIFG 82 (311)
Q Consensus 10 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~-~~~~s~~~ 82 (311)
.++--|| ++..+.+||.|+|-||.-.--.+++..|...|++.++.++..+| .+...|+++++... ++.++.+
T Consensus 296 ~~lDIGp~Ti~~~~~~i~~aktI~wNGP~GvfE~~~F~~GT~~l~~aia~~t~~~a~sivGGGdt~aA~~~~g~~~~~s- 374 (401)
T PLN02282 296 MGLDIGPDSIKTFSEALDTTKTIIWNGPMGVFEFEKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMS- 374 (401)
T ss_pred eeeccCHHHHHHHHHHHhhCCEEEEECCcCCccCcchhHHHHHHHHHHHHhhcCCCEEEEeCcHHHHHHHHcCCcCCce-
Confidence 4555566 67899999999999999877788999999999999999885544 44444555544432 2322221
Q ss_pred hhhhhhhhhhhhhhhhccCCCchhhh
Q 021567 83 LNMVESGSAVWEFLKGRMLPGVSALD 108 (311)
Q Consensus 83 ~~~fe~~a~~wd~~~~r~~~~~~~l~ 108 (311)
| ...+....++++-|+..|+.+++.
T Consensus 375 h-vSTGGGA~Le~LeGk~LPgi~aL~ 399 (401)
T PLN02282 375 H-ISTGGGASLELLEGKPLPGVLALD 399 (401)
T ss_pred E-EeCchHHHHHHHcCCCcchHHHhh
Confidence 1 234568889999999999876554
No 244
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=96.38 E-value=0.017 Score=55.32 Aligned_cols=96 Identities=14% Similarity=0.160 Sum_probs=63.7
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHH-HHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT-HCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~-~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
-...+|+|.|.|..+..+...+|+ +-|++... ...+.+.... +.|+.+-+|...- .| . -|+|++...-
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~a~~~~-~gV~~v~gdmfq~----~P--~--~daI~mkWiL 246 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAAAPYLA-PGVEHVAGDMFQD----TP--K--GDAIWMKWIL 246 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCC--CceeecCHHHHHhhhhhhc-CCcceeccccccc----CC--C--cCeEEEEeec
Confidence 478999999999999999999986 55555432 2233332222 4578888886543 23 2 2377776432
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
....+.+ . -+||+.++..|+|||.+++.
T Consensus 247 hdwtDed----c--vkiLknC~~sL~~~GkIiv~ 274 (342)
T KOG3178|consen 247 HDWTDED----C--VKILKNCKKSLPPGGKIIVV 274 (342)
T ss_pred ccCChHH----H--HHHHHHHHHhCCCCCEEEEE
Confidence 2111111 1 38999999999999999985
No 245
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=96.11 E-value=0.0018 Score=57.77 Aligned_cols=89 Identities=26% Similarity=0.334 Sum_probs=62.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe---
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ--- 201 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~--- 201 (311)
+..++||||.|.|+++..++..+. .|.+.|+|..++.+.+..+. ||-- ..+.. + .+-.+|+|...
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~fe--evyATElS~tMr~rL~kk~y-nVl~---~~ew~-~-----t~~k~dli~clNlL 179 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFE--EVYATELSWTMRDRLKKKNY-NVLT---EIEWL-Q-----TDVKLDLILCLNLL 179 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHH--HHHHHHhhHHHHHHHhhcCC-ceee---ehhhh-h-----cCceeehHHHHHHH
Confidence 457899999999999999998864 58889999999988876654 3211 11111 1 24456776432
Q ss_pred --CCCCCCCCchhhhhhhHHHHHHHHHhcccC-CeEEEEE
Q 021567 202 --CPNPDFNRPEHRWRMVQRSLVEAVSDLLVH-DGKVFLQ 238 (311)
Q Consensus 202 --fpdP~~k~~h~krRl~~~~~l~~i~rvLkp-GG~l~~~ 238 (311)
+-+| -.+|+.|+.+|.| +|+++++
T Consensus 180 DRc~~p-------------~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 180 DRCFDP-------------FKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred HhhcCh-------------HHHHHHHHHHhccCCCcEEEE
Confidence 1233 2889999999999 8988774
No 246
>PRK10742 putative methyltransferase; Provisional
Probab=96.00 E-value=0.068 Score=49.15 Aligned_cols=70 Identities=17% Similarity=0.116 Sum_probs=53.0
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchH-------HHHHHHHHHc---C--C-CcEEEEEccccchhhhhhccCC
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV-------THCRDSLQLS---G--I-TNGYFIATNATSTFRSIVASYP 192 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~-------~~a~~~a~~~---~--~-~Nv~f~~~Da~~ll~~~~~~~~ 192 (311)
.+.|||.=+|+|..++.+|.+ ++.|+++|.+ ...++++... + + .+++++++|+.+.+.. . .
T Consensus 89 ~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~-~---~ 162 (250)
T PRK10742 89 LPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD-I---T 162 (250)
T ss_pred CCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhh-C---C
Confidence 468999999999999999988 6779999943 3444444211 2 2 5799999999998764 2 3
Q ss_pred CcEeEEEEe
Q 021567 193 GKLILVSIQ 201 (311)
Q Consensus 193 ~s~D~V~i~ 201 (311)
.++|+||+.
T Consensus 163 ~~fDVVYlD 171 (250)
T PRK10742 163 PRPQVVYLD 171 (250)
T ss_pred CCCcEEEEC
Confidence 479999875
No 247
>PTZ00005 phosphoglycerate kinase; Provisional
Probab=95.99 E-value=0.015 Score=57.29 Aligned_cols=96 Identities=24% Similarity=0.477 Sum_probs=65.8
Q ss_pred eeccCCc-----hhhHhhhhceeEEEcccc-ccccccccchhHHHHHHHhhhhcC-ceeEEEcchhhHHHHH-hhccchh
Q 021567 10 SILGQGP-----WKRLLLQLQNVIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQG-TCNVTVIGSMACKAIA-KVSSSIF 81 (311)
Q Consensus 10 ~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~-~~~~s~~ 81 (311)
.++--|| ++.++.+||+|+|-||.- |.++ ++..|..+|++.++.+++. ...+...|+++++.-. ++.+...
T Consensus 312 ~~lDIGp~Ti~~~~~~i~~akTV~wNGP~GvFE~~-~F~~GT~~i~~aia~~t~~~a~sivGGGdt~aAi~~~g~~~~~s 390 (417)
T PTZ00005 312 MGLDAGPKSIEEFAEAILRAKTIVWNGPQGVFEMP-NFAKGSIAMLDAVVKATEKGAITIVGGGDTASLVEKTGAANKVS 390 (417)
T ss_pred EEeccCHHHHHHHHHHHhhCCEEEEECCCccccCC-cchHHHHHHHHHHHHhccCCCEEEEeCcHHHHHHHHcCCCCCCc
Confidence 4455566 678999999999999998 8875 7999999999999988754 4455555566665533 3322211
Q ss_pred hhhhhhhhhhhhhhhhhccCCCchhhh
Q 021567 82 GLNMVESGSAVWEFLKGRMLPGVSALD 108 (311)
Q Consensus 82 ~~~~fe~~a~~wd~~~~r~~~~~~~l~ 108 (311)
| ...+....-+++-|+..|+.+++.
T Consensus 391 -h-vSTGGGA~Le~LeGk~LPgv~aL~ 415 (417)
T PTZ00005 391 -H-VSTGGGASLELLEGKELPGVVALS 415 (417)
T ss_pred -e-EcCchHHHHHHHcCCCcchHHHhh
Confidence 1 122346677778888888765443
No 248
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.92 E-value=0.12 Score=46.58 Aligned_cols=118 Identities=11% Similarity=0.139 Sum_probs=86.4
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchH----HHHHHHHHHcCC-CcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV----THCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~----~~a~~~a~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
+..+.||||=.|.+...|-+.++...+++.|++ ..|.+.+.+.++ +.+....+|....+. .+..+|.+++
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~-----~~d~~d~ivI 91 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLE-----LEDEIDVIVI 91 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccC-----ccCCcCEEEE
Confidence 344999999999999999999999999999986 456666666664 457777888754421 3557899887
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCce
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~ 260 (311)
--.-- .+ -.++|++-.+.|+.--+++++..+..+ +.++.+..++|...
T Consensus 92 AGMGG---------~l-I~~ILee~~~~l~~~~rlILQPn~~~~--~LR~~L~~~~~~I~ 139 (226)
T COG2384 92 AGMGG---------TL-IREILEEGKEKLKGVERLILQPNIHTY--ELREWLSANSYEIK 139 (226)
T ss_pred eCCcH---------HH-HHHHHHHhhhhhcCcceEEECCCCCHH--HHHHHHHhCCceee
Confidence 62211 11 247888888888766788888766544 77888888888644
No 249
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=95.84 E-value=0.015 Score=54.94 Aligned_cols=107 Identities=18% Similarity=0.341 Sum_probs=45.3
Q ss_pred hhhhhhhhhhccCCCch-hhhhhCCCchhhH-hhcCC-----CCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHH
Q 021567 89 GSAVWEFLKGRMLPGVS-ALDRAFPFDIDWS-AAYHD-----PAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC 161 (311)
Q Consensus 89 ~a~~wd~~~~r~~~~~~-~l~~~~~~~~~~~-~~f~~-----~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a 161 (311)
.-..||.-.+++-|... .++ -+.|. +.... +..-++||||||.-++---|+.+..+++++|.|+.+.+
T Consensus 64 gl~~wdiP~~~LcP~iP~R~n-----Yi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~s 138 (299)
T PF05971_consen 64 GLDVWDIPEGRLCPPIPNRLN-----YIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKS 138 (299)
T ss_dssp --------TTS----HHHHHH-----HHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHH
T ss_pred CCccccCCCCCcCCCCchhHH-----HHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHH
Confidence 56678988888888761 111 11221 11111 12458999999999885444444338999999987655
Q ss_pred HHH----HHHc-CCC-cEEEEEcccc-chhhhhhccCCCcEeEEEEe
Q 021567 162 RDS----LQLS-GIT-NGYFIATNAT-STFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 162 ~~~----a~~~-~~~-Nv~f~~~Da~-~ll~~~~~~~~~s~D~V~i~ 201 (311)
++. ++++ ++. .|+++...-. .++..+.. .+..+|....|
T Consensus 139 l~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~-~~e~~dftmCN 184 (299)
T PF05971_consen 139 LESARENVERNPNLESRIELRKQKNPDNIFDGIIQ-PNERFDFTMCN 184 (299)
T ss_dssp HHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT---S-EEEEEE-
T ss_pred HHHHHHHHHhccccccceEEEEcCCccccchhhhc-ccceeeEEecC
Confidence 544 4455 553 5888765432 33332221 34578877666
No 250
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=95.73 E-value=0.072 Score=49.81 Aligned_cols=101 Identities=13% Similarity=0.154 Sum_probs=59.1
Q ss_pred CeEEEEeccccHH-HHHHHhh-CCCCeEEEEchHHHHHHHHHH-----cCC-CcEEEEEccccchhhhhhccCCCcEeEE
Q 021567 127 PLVVDIGSGNGLF-LLGMARK-RKDLNFLGLELVTHCRDSLQL-----SGI-TNGYFIATNATSTFRSIVASYPGKLILV 198 (311)
Q Consensus 127 ~~vLDIGcGtG~~-~~~lA~~-~p~~~vvGiDi~~~a~~~a~~-----~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V 198 (311)
.+|+=||||.=-+ ++.+|++ .++..|+++|+.+.|.+.+++ .++ ..+.|+.+|+.+... .-..+|.|
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~-----dl~~~DvV 196 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTY-----DLKEYDVV 196 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-G-----G----SEE
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccc-----ccccCCEE
Confidence 5899999996555 5677765 467899999998777665532 233 469999999987621 23578999
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
++.---.. +...| .++++.+.+.++||..+.+.+
T Consensus 197 ~lAalVg~--~~e~K-----~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 197 FLAALVGM--DAEPK-----EEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp EE-TT-S------SH-----HHHHHHHHHHS-TTSEEEEEE
T ss_pred EEhhhccc--ccchH-----HHHHHHHHhhCCCCcEEEEec
Confidence 87632110 11122 488999999999999999986
No 251
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=95.62 E-value=0.01 Score=52.26 Aligned_cols=93 Identities=15% Similarity=0.208 Sum_probs=62.0
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH----cCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~----~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
...+.|+|+|+|.++.-.|.. ..+|++||....-.+.+.+ .|..|++.+.+||.+. .+ ..-|.|..-
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y-----~f--e~ADvvicE 103 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDY-----DF--ENADVVICE 103 (252)
T ss_pred hhceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccc-----cc--cccceeHHH
Confidence 468999999999999888776 4689999986554444443 4678999999999987 21 234555433
Q ss_pred CCCCCCCCchhhhhhhHH---HHHHHHHhcccCCeEEE
Q 021567 202 CPNPDFNRPEHRWRMVQR---SLVEAVSDLLVHDGKVF 236 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~---~~l~~i~rvLkpGG~l~ 236 (311)
+-|-- ++.+ ..++.+..-|+.++.++
T Consensus 104 mlDTa---------Li~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 104 MLDTA---------LIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred HhhHH---------hhcccccHHHHHHHHHhhcCCccc
Confidence 32221 1111 44555556677777765
No 252
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=95.58 E-value=0.039 Score=49.39 Aligned_cols=103 Identities=17% Similarity=0.231 Sum_probs=52.6
Q ss_pred CCeEEEEeccccHHHHHHHhh----CCCCeEEEEchHHHH--HHHHHHcCC-CcEEEEEccccchhhhhhccC----CCc
Q 021567 126 QPLVVDIGSGNGLFLLGMARK----RKDLNFLGLELVTHC--RDSLQLSGI-TNGYFIATNATSTFRSIVASY----PGK 194 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~----~p~~~vvGiDi~~~a--~~~a~~~~~-~Nv~f~~~Da~~ll~~~~~~~----~~s 194 (311)
..+|+|+|.-.|..++.+|.. .++.+|+|||+..+. .+..+.+.+ +++++++||..+. ....+.. ...
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~-~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDP-EIVDQVRELASPPH 111 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSST-HHHHTSGSS----S
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCH-HHHHHHHHhhccCC
Confidence 478999999999999988764 378899999984222 222222222 5799999998875 2222110 112
Q ss_pred EeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 195 LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 195 ~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
-..|+ . | .+|.+..+ -.-|+.+...+++|+++++.
T Consensus 112 ~vlVi-l--D-----s~H~~~hv-l~eL~~y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 112 PVLVI-L--D-----SSHTHEHV-LAELEAYAPLVSPGSYLIVE 146 (206)
T ss_dssp SEEEE-E--S-----S----SSH-HHHHHHHHHT--TT-EEEET
T ss_pred ceEEE-E--C-----CCccHHHH-HHHHHHhCccCCCCCEEEEE
Confidence 12222 2 2 23333333 25566799999999999874
No 253
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=95.54 E-value=0.075 Score=50.40 Aligned_cols=76 Identities=11% Similarity=0.059 Sum_probs=57.9
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc--C-CCcEEEEEccccchhhhhhcc-CCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--G-ITNGYFIATNATSTFRSIVAS-YPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~--~-~~Nv~f~~~Da~~ll~~~~~~-~~~s~D~V~i 200 (311)
++.+++|-=||.|..+..+++..|+..++|+|....|++.+++. . ..++.+++++-.++.. .+.. ...++|.|++
T Consensus 20 ~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~-~l~~~~~~~vDgIl~ 98 (305)
T TIGR00006 20 PDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFE-HLDELLVTKIDGILV 98 (305)
T ss_pred CCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHH-HHHhcCCCcccEEEE
Confidence 45799999999999999999988779999999888777766532 1 2479999999888643 2321 2356888865
Q ss_pred e
Q 021567 201 Q 201 (311)
Q Consensus 201 ~ 201 (311)
.
T Consensus 99 D 99 (305)
T TIGR00006 99 D 99 (305)
T ss_pred e
Confidence 4
No 254
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=95.52 E-value=0.044 Score=51.04 Aligned_cols=123 Identities=16% Similarity=0.125 Sum_probs=80.0
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHH-------HH-------------------------HHH-----
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR-------DS-------------------------LQL----- 167 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~-------~~-------------------------a~~----- 167 (311)
...+||==|||.|.++..+|.+ +..+.|.|.|-.++ .. .+.
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 4578999999999999999998 67999999643221 10 000
Q ss_pred -------cCCCcEEEEEccccchhhhhhccCCCcEeEEE-EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE-
Q 021567 168 -------SGITNGYFIATNATSTFRSIVASYPGKLILVS-IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ- 238 (311)
Q Consensus 168 -------~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~-i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~- 238 (311)
....|+.+..||-.++... +...+++|.|. ..|.|-- +.+ -++++.|.++|||||..+=.
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~--~~~~~~~d~VvT~FFIDTA-------~Ni--~~Yi~tI~~lLkpgG~WIN~G 202 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGP--DENKGSFDVVVTCFFIDTA-------ENI--IEYIETIEHLLKPGGYWINFG 202 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCC--cccCCcccEEEEEEEeech-------HHH--HHHHHHHHHHhccCCEEEecC
Confidence 0123567777776665321 01136888874 4555542 122 38999999999999965411
Q ss_pred ------eC--------cHHHHHHHHHHHHhcCCCce
Q 021567 239 ------SD--------IEEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 239 ------tD--------~~~~~~~~~~~l~~~g~~~~ 260 (311)
.+ .+--.+++.+.++..||..+
T Consensus 203 PLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~ 238 (270)
T PF07942_consen 203 PLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIE 238 (270)
T ss_pred CccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEE
Confidence 11 12226788888888898765
No 255
>cd00318 Phosphoglycerate_kinase Phosphoglycerate kinase (PGK) is a monomeric enzyme which catalyzes the transfer of the high-energy phosphate group of 1,3-bisphosphoglycerate to ADP, forming ATP and 3-phosphoglycerate. This reaction represents the first of the two substrate-level phosphorylation events in the glycolytic pathway. Substrate-level phosphorylation is defined as production of ATP by a process, which is catalyzed by water-soluble enzymes in the cytosol; not involving membranes and ion gradients.
Probab=95.50 E-value=0.032 Score=54.71 Aligned_cols=97 Identities=23% Similarity=0.433 Sum_probs=67.5
Q ss_pred eeeccCCc-----hhhHhhhhceeEEEccccccccccccchhHHHHHHHhhhhcC-ceeEEEcchhhHHHHH-hhccchh
Q 021567 9 LSILGQGP-----WKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQG-TCNVTVIGSMACKAIA-KVSSSIF 81 (311)
Q Consensus 9 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~-~~~~s~~ 81 (311)
..++--|| ++..+.++|.|+|-||.-.--.+++..|...|++.++.+++. ..++...|+++++.-. ++.+..+
T Consensus 292 ~~~lDIGp~Ti~~~~~~i~~aktI~wNGP~GvfE~~~F~~GT~~l~~aia~~~~~~a~sivGGGdt~aa~~~~g~~~~~s 371 (397)
T cd00318 292 WMGLDIGPKTIELFAEVIRKAKTIVWNGPMGVFEFPAFAKGTKAIADAIAAATKAGAFSIIGGGDTAAAAEKFGLADKIS 371 (397)
T ss_pred CEEEeeCHHHHHHHHHHHhhCCEEEEECCCcCccCCcccHHHHHHHHHHHHhccCCCEEEEeCcHHHHHHHHcCCCCCce
Confidence 44555666 578899999999999997766889999999999998887754 4444455555554432 3333222
Q ss_pred hhhhhhhhhhhhhhhhhccCCCchhh
Q 021567 82 GLNMVESGSAVWEFLKGRMLPGVSAL 107 (311)
Q Consensus 82 ~~~~fe~~a~~wd~~~~r~~~~~~~l 107 (311)
| ...+....++++-|+..|+.+++
T Consensus 372 -h-vSTGGGA~Le~LeGk~LPgi~aL 395 (397)
T cd00318 372 -H-VSTGGGASLELLEGKELPGVAAL 395 (397)
T ss_pred -E-EcCchHHHHHHHcCCCCchHHhh
Confidence 1 22345777899999988887544
No 256
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=95.43 E-value=0.12 Score=48.11 Aligned_cols=120 Identities=13% Similarity=0.203 Sum_probs=61.3
Q ss_pred CCeEEEEecccc--HHHHHHHhh-CCCCeEEEEchHHHHHH--HHHHcCCCc--EEEEEccccchhhhhhcc--------
Q 021567 126 QPLVVDIGSGNG--LFLLGMARK-RKDLNFLGLELVTHCRD--SLQLSGITN--GYFIATNATSTFRSIVAS-------- 190 (311)
Q Consensus 126 ~~~vLDIGcGtG--~~~~~lA~~-~p~~~vvGiDi~~~a~~--~a~~~~~~N--v~f~~~Da~~ll~~~~~~-------- 190 (311)
-..+||||||-= ...-+.|++ .|+++|+=+|.....+. ++.-.+-++ ..++++|+.+. ..++..
T Consensus 69 IrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p-~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 69 IRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDP-EAILAHPEVRGLLD 147 (267)
T ss_dssp --EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-H-HHHHCSHHHHCC--
T ss_pred cceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCH-HHHhcCHHHHhcCC
Confidence 368999999943 345666665 89999999996543332 222233345 89999999885 333311
Q ss_pred CCCcEeEEEE---eC-CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe---C-cHHHHHHHHHHHHhcC
Q 021567 191 YPGKLILVSI---QC-PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS---D-IEEVMLRMKQQFLEYG 256 (311)
Q Consensus 191 ~~~s~D~V~i---~f-pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t---D-~~~~~~~~~~~l~~~g 256 (311)
.+..+-++.+ +| +|. ... ..++..+...|.||.+|.++. | .....+.+.+.+.+.+
T Consensus 148 ~~rPVavll~~vLh~v~D~----~dp------~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~~ 211 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDD----DDP------AGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQAG 211 (267)
T ss_dssp TTS--EEEECT-GGGS-CG----CTH------HHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHCC
T ss_pred CCCCeeeeeeeeeccCCCc----cCH------HHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHcCC
Confidence 1333444332 22 221 111 488999999999999999963 2 2223344555555554
No 257
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=95.30 E-value=0.26 Score=46.42 Aligned_cols=123 Identities=16% Similarity=0.139 Sum_probs=87.6
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH------HcC--CCcEEEEEccccchhhhhhccCCCcEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ------LSG--ITNGYFIATNATSTFRSIVASYPGKLI 196 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~------~~~--~~Nv~f~~~Da~~ll~~~~~~~~~s~D 196 (311)
+..++|=||-|-|.+....+++-.-.+++-+|+...-.+..+ ..| -+.|.++-||...+++.. ..+.+|
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~---~~~~~d 197 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDL---KENPFD 197 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHh---ccCCce
Confidence 467899999999999999888722236666775332222111 122 356999999999886542 478999
Q ss_pred EEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHh
Q 021567 197 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLE 254 (311)
Q Consensus 197 ~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~ 254 (311)
+|.+--.||.- +...+..+.+...+.+.||+||++..+.|+.++.....+...+
T Consensus 198 Vii~dssdpvg----pa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~~i~e~r~ 251 (337)
T KOG1562|consen 198 VIITDSSDPVG----PACALFQKPYFGLVLDALKGDGVVCTQGECMWLHLDYIKEGRS 251 (337)
T ss_pred EEEEecCCccc----hHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHHHHHHHHHH
Confidence 99998888853 2234566789999999999999999998886665544444433
No 258
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=95.28 E-value=0.12 Score=51.64 Aligned_cols=99 Identities=11% Similarity=0.108 Sum_probs=71.0
Q ss_pred eEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcC---CCcEEEEEccccchhhhhhccCCCcEeEEEE----
Q 021567 128 LVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG---ITNGYFIATNATSTFRSIVASYPGKLILVSI---- 200 (311)
Q Consensus 128 ~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~---~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i---- 200 (311)
++|-+|||.=.+...+-+.. ...++-+|+|..+.+.+...+ -.-..+...|+..+ .+++.+||.|..
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l-----~fedESFdiVIdkGtl 124 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQL-----VFEDESFDIVIDKGTL 124 (482)
T ss_pred eeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhccccCCcceEEEEecchhc-----cCCCcceeEEEecCcc
Confidence 79999999999999887762 346889998877666654433 23478899998887 447899998852
Q ss_pred --eCC---CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 201 --QCP---NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 201 --~fp---dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
.|. ++|.+ ++ ...-+.+++|+|+|||++...|
T Consensus 125 Dal~~de~a~~~~--~~-----v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 125 DALFEDEDALLNT--AH-----VSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred ccccCCchhhhhh--HH-----hhHHHhhHHHHhccCCEEEEEE
Confidence 122 22211 11 2577899999999999987765
No 259
>PRK00073 pgk phosphoglycerate kinase; Provisional
Probab=95.28 E-value=0.033 Score=54.40 Aligned_cols=94 Identities=23% Similarity=0.473 Sum_probs=64.2
Q ss_pred eeccCCc-----hhhHhhhhceeEEEccccccccccccchhHHHHHHHhhhhcCceeEEEcchhhHHHHH-hhccchhhh
Q 021567 10 SILGQGP-----WKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIA-KVSSSIFGL 83 (311)
Q Consensus 10 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~s~~~~ 83 (311)
.++--|| ++..+.++|.|+|-||.-.--.+++..|..+|++.++..+ .+++...|+++++... ++.+... |
T Consensus 288 ~~lDIGp~Ti~~~~~~i~~akti~wNGP~GvfE~~~F~~GT~~l~~aia~~~--a~sivGGGdt~aa~~~~g~~~~~s-h 364 (389)
T PRK00073 288 MILDIGPKTIELFAEIIKDAKTIVWNGPMGVFEFENFAKGTKAVAKAIAEST--AFSIIGGGDTAAAVEKLGLADKFS-H 364 (389)
T ss_pred eeeecCHHHHHHHHHHHhhCCEEEEECCCCccccccchHHHHHHHHHHHhcC--CeEEEcCCHHHHHHHHcCCCCCcc-E
Confidence 4444565 5788999999999999976667789999999999988743 5667777777665543 3322211 1
Q ss_pred hhhhhhhhhhhhhhhccCCCchhh
Q 021567 84 NMVESGSAVWEFLKGRMLPGVSAL 107 (311)
Q Consensus 84 ~~fe~~a~~wd~~~~r~~~~~~~l 107 (311)
...+....-+++-|+..|+.+++
T Consensus 365 -iSTGGGA~Le~LeGk~LPgv~aL 387 (389)
T PRK00073 365 -ISTGGGASLEFLEGKELPGVAAL 387 (389)
T ss_pred -EcCCcHHHHHHHcCCCcchHHHh
Confidence 12334566777777777776443
No 260
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.16 E-value=0.049 Score=54.52 Aligned_cols=119 Identities=15% Similarity=0.164 Sum_probs=77.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchH----HHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV----THCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~----~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
.-..|+|...|.|.|+.+|.+. | |.-+-.+ ...+..+-.+|+-. -..+. -+.|+.++.++|+++.
T Consensus 365 ~iRNVMDMnAg~GGFAAAL~~~-~---VWVMNVVP~~~~ntL~vIydRGLIG------~yhDW-CE~fsTYPRTYDLlHA 433 (506)
T PF03141_consen 365 RIRNVMDMNAGYGGFAAALIDD-P---VWVMNVVPVSGPNTLPVIYDRGLIG------VYHDW-CEAFSTYPRTYDLLHA 433 (506)
T ss_pred ceeeeeeecccccHHHHHhccC-C---ceEEEecccCCCCcchhhhhcccch------hccch-hhccCCCCcchhheeh
Confidence 3468999999999999999865 2 3333222 12333344455411 11121 2235668999999976
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCce
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~ 260 (311)
... +.. .+.|-.-..++-|+-|+|+|||.+++. |..+..+.+...+....|...
T Consensus 434 ~~l---fs~--~~~rC~~~~illEmDRILRP~G~~iiR-D~~~vl~~v~~i~~~lrW~~~ 487 (506)
T PF03141_consen 434 DGL---FSL--YKDRCEMEDILLEMDRILRPGGWVIIR-DTVDVLEKVKKIAKSLRWEVR 487 (506)
T ss_pred hhh---hhh--hcccccHHHHHHHhHhhcCCCceEEEe-ccHHHHHHHHHHHHhCcceEE
Confidence 522 111 112233368899999999999999995 777788888888888877654
No 261
>PRK13699 putative methylase; Provisional
Probab=95.02 E-value=0.083 Score=47.93 Aligned_cols=81 Identities=11% Similarity=0.069 Sum_probs=52.2
Q ss_pred EEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCC-ch-hhhh-------hhHHHHHHHHHhcccCCeEEEEEeCcHH
Q 021567 173 GYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNR-PE-HRWR-------MVQRSLVEAVSDLLVHDGKVFLQSDIEE 243 (311)
Q Consensus 173 v~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~-~h-~krR-------l~~~~~l~~i~rvLkpGG~l~~~tD~~~ 243 (311)
.++.++|+.+.+.. + +++++|+|+.. .|+... +. ..+. -....++++++|+|||||.+++-+++..
T Consensus 2 ~~l~~gD~le~l~~-l--pd~SVDLIiTD--PPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~ 76 (227)
T PRK13699 2 SRFILGNCIDVMAR-F--PDNAVDFILTD--PPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNR 76 (227)
T ss_pred CeEEechHHHHHHh-C--CccccceEEeC--CCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEecccc
Confidence 36789999988664 3 58999999775 333210 00 0111 1125788999999999999987666543
Q ss_pred HHHHHHHHHHhcCCCc
Q 021567 244 VMLRMKQQFLEYGKGK 259 (311)
Q Consensus 244 ~~~~~~~~l~~~g~~~ 259 (311)
. ......+++.|+..
T Consensus 77 ~-~~~~~al~~~GF~l 91 (227)
T PRK13699 77 V-DRFMAAWKNAGFSV 91 (227)
T ss_pred H-HHHHHHHHHCCCEE
Confidence 3 33455667778753
No 262
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=94.88 E-value=0.25 Score=41.54 Aligned_cols=85 Identities=9% Similarity=0.083 Sum_probs=51.0
Q ss_pred eEEEEchHHHHHHHH----HHcCC-CcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCch--hhhhhhHHHHHH
Q 021567 151 NFLGLELVTHCRDSL----QLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPE--HRWRMVQRSLVE 223 (311)
Q Consensus 151 ~vvGiDi~~~a~~~a----~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h--~krRl~~~~~l~ 223 (311)
+|+|.|+-++|++.. ++.+. .++.+++.+=+.+ ...++ ++.+|.+++|+--- |...| .-+...+-..++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l-~~~i~--~~~v~~~iFNLGYL-PggDk~i~T~~~TTl~Al~ 76 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENL-DEYIP--EGPVDAAIFNLGYL-PGGDKSITTKPETTLKALE 76 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGG-GGT----S--EEEEEEEESB--CTS-TTSB--HHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHH-HhhCc--cCCcCEEEEECCcC-CCCCCCCCcCcHHHHHHHH
Confidence 589999976666554 44555 4699998887666 44442 36899999885210 11100 001222357899
Q ss_pred HHHhcccCCeEEEEEe
Q 021567 224 AVSDLLVHDGKVFLQS 239 (311)
Q Consensus 224 ~i~rvLkpGG~l~~~t 239 (311)
.+.++|+|||.+.+..
T Consensus 77 ~al~lL~~gG~i~iv~ 92 (140)
T PF06962_consen 77 AALELLKPGGIITIVV 92 (140)
T ss_dssp HHHHHEEEEEEEEEEE
T ss_pred HHHHhhccCCEEEEEE
Confidence 9999999999999875
No 263
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.79 E-value=0.43 Score=37.68 Aligned_cols=99 Identities=15% Similarity=0.094 Sum_probs=66.3
Q ss_pred ccccHHHHHHHhh--CCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCch
Q 021567 134 SGNGLFLLGMARK--RKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPE 211 (311)
Q Consensus 134 cGtG~~~~~lA~~--~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h 211 (311)
||.|.++..+++. ..+..++.+|..+...+.+...+ +.++.+|+.+. ..+-...-...+.+++..++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~---~~~i~gd~~~~-~~l~~a~i~~a~~vv~~~~~d~----- 74 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG---VEVIYGDATDP-EVLERAGIEKADAVVILTDDDE----- 74 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT---SEEEES-TTSH-HHHHHTTGGCESEEEEESSSHH-----
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc---cccccccchhh-hHHhhcCccccCEEEEccCCHH-----
Confidence 6778888888775 22348999999887777777665 67999999875 2111112356788887765431
Q ss_pred hhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHH
Q 021567 212 HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLR 247 (311)
Q Consensus 212 ~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~ 247 (311)
..-.+....+.+.|...++...++..+.+.
T Consensus 75 ------~n~~~~~~~r~~~~~~~ii~~~~~~~~~~~ 104 (116)
T PF02254_consen 75 ------ENLLIALLARELNPDIRIIARVNDPENAEL 104 (116)
T ss_dssp ------HHHHHHHHHHHHTTTSEEEEEESSHHHHHH
T ss_pred ------HHHHHHHHHHHHCCCCeEEEEECCHHHHHH
Confidence 123455566778899999999888766443
No 264
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=94.41 E-value=0.19 Score=45.89 Aligned_cols=70 Identities=20% Similarity=0.151 Sum_probs=47.1
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEch-------HHHHHHHHHHcCC------CcEEEEEccccchhhhhhccCC
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL-------VTHCRDSLQLSGI------TNGYFIATNATSTFRSIVASYP 192 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi-------~~~a~~~a~~~~~------~Nv~f~~~Da~~ll~~~~~~~~ 192 (311)
.+.|||.=+|-|.=++-+|.. +.+|+|+|- ...+++++....- .+++++++|+.+++. .++
T Consensus 76 ~~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~----~~~ 149 (234)
T PF04445_consen 76 RPSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR----QPD 149 (234)
T ss_dssp ---EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC----CHS
T ss_pred CCEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh----hcC
Confidence 368999999999999999976 678999993 3566676654322 379999999999864 247
Q ss_pred CcEeEEEEe
Q 021567 193 GKLILVSIQ 201 (311)
Q Consensus 193 ~s~D~V~i~ 201 (311)
.++|+||+.
T Consensus 150 ~s~DVVY~D 158 (234)
T PF04445_consen 150 NSFDVVYFD 158 (234)
T ss_dssp S--SEEEE-
T ss_pred CCCCEEEEC
Confidence 899999874
No 265
>PRK11524 putative methyltransferase; Provisional
Probab=94.38 E-value=0.17 Score=47.23 Aligned_cols=80 Identities=9% Similarity=0.069 Sum_probs=50.6
Q ss_pred CcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCch-----h---hhhh--hHHHHHHHHHhcccCCeEEEEEeC
Q 021567 171 TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPE-----H---RWRM--VQRSLVEAVSDLLVHDGKVFLQSD 240 (311)
Q Consensus 171 ~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h-----~---krRl--~~~~~l~~i~rvLkpGG~l~~~tD 240 (311)
.+-.++++|+.+.+.. + ++++||+|++. .|...... . ..+. ....++.++.++|||||.+++.++
T Consensus 7 ~~~~i~~gD~~~~l~~-l--~~~siDlIitD--PPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~ 81 (284)
T PRK11524 7 EAKTIIHGDALTELKK-I--PSESVDLIFAD--PPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS 81 (284)
T ss_pred CCCEEEeccHHHHHHh-c--ccCcccEEEEC--CCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 3557899999997643 3 57899999886 23221100 0 0011 125788999999999999999877
Q ss_pred cHHHHHHHHHHHHhcCC
Q 021567 241 IEEVMLRMKQQFLEYGK 257 (311)
Q Consensus 241 ~~~~~~~~~~~l~~~g~ 257 (311)
..... + ...+.+.++
T Consensus 82 ~~~~~-~-~~~~~~~~f 96 (284)
T PRK11524 82 TENMP-F-IDLYCRKLF 96 (284)
T ss_pred chhhh-H-HHHHHhcCc
Confidence 65432 2 333445554
No 266
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=94.19 E-value=0.31 Score=47.58 Aligned_cols=114 Identities=12% Similarity=0.182 Sum_probs=77.3
Q ss_pred CeEEEEeccccHHHHHHHhhCC-CCeEEEEchHHHHHHHHH----HcCCCc--EEEEEccccchhhhhhccCCCcEeEEE
Q 021567 127 PLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTHCRDSLQ----LSGITN--GYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 127 ~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~~~a~~~a~----~~~~~N--v~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
-++||-=+|+|-=++++|...+ ...++.-|+++.|.+.++ .+++++ ++..+.||..++. .....||.|-
T Consensus 51 ~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~----~~~~~fD~ID 126 (377)
T PF02005_consen 51 IRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLY----SRQERFDVID 126 (377)
T ss_dssp EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHC----HSTT-EEEEE
T ss_pred ceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhh----hccccCCEEE
Confidence 4799999999999999999844 468999999877665554 456654 8999999999863 1367899997
Q ss_pred Ee-CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE-eCcHHHHH-HHHHHHHhcCC
Q 021567 200 IQ-CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-SDIEEVML-RMKQQFLEYGK 257 (311)
Q Consensus 200 i~-fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~-tD~~~~~~-~~~~~l~~~g~ 257 (311)
+. |-.| ..||+...+.++.||.+.+. ||...+.. +...-+..+|.
T Consensus 127 lDPfGSp-------------~pfldsA~~~v~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 174 (377)
T PF02005_consen 127 LDPFGSP-------------APFLDSALQAVKDGGLLCVTATDTAVLCGSYPEKCFRKYGA 174 (377)
T ss_dssp E--SS---------------HHHHHHHHHHEEEEEEEEEEE--HHHHTTSSHHHHHHHHSS
T ss_pred eCCCCCc-------------cHhHHHHHHHhhcCCEEEEeccccccccCCChhHHHHhcCC
Confidence 74 2222 38999999999999999985 67655432 22334455553
No 267
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.03 E-value=0.3 Score=47.29 Aligned_cols=102 Identities=12% Similarity=0.159 Sum_probs=80.0
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH----cCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~----~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
..+|+|-=+|||.=++++|..-+...++.-|+++.|.+.+++ +...+...+..||..++.+ ....||.|-+.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~----~~~~fd~IDiD 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHE----LHRAFDVIDID 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHh----cCCCccEEecC
Confidence 468999999999999999999877799999998888776654 3345677778999998653 24678888663
Q ss_pred -CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE-eCcHHH
Q 021567 202 -CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-SDIEEV 244 (311)
Q Consensus 202 -fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~-tD~~~~ 244 (311)
|-.| ..|++...+.++.||.+.+. ||...+
T Consensus 129 PFGSP-------------aPFlDaA~~s~~~~G~l~vTATD~a~L 160 (380)
T COG1867 129 PFGSP-------------APFLDAALRSVRRGGLLCVTATDTAPL 160 (380)
T ss_pred CCCCC-------------chHHHHHHHHhhcCCEEEEEecccccc
Confidence 3333 28999999999999999984 676544
No 268
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=94.02 E-value=0.048 Score=43.78 Aligned_cols=40 Identities=25% Similarity=0.468 Sum_probs=29.7
Q ss_pred hhHhhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEch
Q 021567 116 DWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL 157 (311)
Q Consensus 116 ~~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi 157 (311)
-|.+.+.....+..+|||||+|-+.--|.+. +..=.|+|.
T Consensus 49 LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 49 LWRDMYGEQKFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred HHhcccCCCCCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 3555544334578999999999998888876 456689996
No 269
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=93.98 E-value=0.14 Score=49.13 Aligned_cols=91 Identities=13% Similarity=0.122 Sum_probs=62.5
Q ss_pred CCeEEEEec-cccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 126 QPLVVDIGS-GNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 126 ~~~vLDIGc-GtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
+..|+=+|+ |-|.+++++|+.. .++++++|.++.-++.+++.|.+.+.--. |.... .. . .+.+|.++..-+
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~-ga~Via~~~~~~K~e~a~~lGAd~~i~~~-~~~~~-~~-~---~~~~d~ii~tv~- 238 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAM-GAEVIAITRSEEKLELAKKLGADHVINSS-DSDAL-EA-V---KEIADAIIDTVG- 238 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc-CCeEEEEeCChHHHHHHHHhCCcEEEEcC-Cchhh-HH-h---HhhCcEEEECCC-
Confidence 556665555 5778899999976 49999999999888888887765322222 32222 21 1 234888876644
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
+ .-++...+.|++||.+.+.
T Consensus 239 ~--------------~~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 239 P--------------ATLEPSLKALRRGGTLVLV 258 (339)
T ss_pred h--------------hhHHHHHHHHhcCCEEEEE
Confidence 3 4577888999999999884
No 270
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=93.89 E-value=0.82 Score=42.60 Aligned_cols=122 Identities=16% Similarity=0.093 Sum_probs=66.7
Q ss_pred CCeEEEEeccccHHHHHHHhhCC-CCeEEEEchHHHHHHHHHH--cCCCcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTHCRDSLQL--SGITNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~~~a~~~a~~--~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
..+|||+|||+|.-+.+..+.++ -..++.+|.+..+++.++. ....+..-.. ....+.....+ -..-|+|++.+
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~~--~~~~DLvi~s~ 110 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAE-WRRVLYRDFLP--FPPDDLVIASY 110 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccch-hhhhhhccccc--CCCCcEEEEeh
Confidence 46899999999999888888776 3479999988777665432 1111111100 00001110011 11228888776
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE-eCcH---HHHHHHHHHHHhcCCC
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-SDIE---EVMLRMKQQFLEYGKG 258 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~-tD~~---~~~~~~~~~l~~~g~~ 258 (311)
.--.... ..| .++++.+.+.+.+ .+++. -... .....+.+.+.+.|+.
T Consensus 111 ~L~EL~~---~~r---~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~ 162 (274)
T PF09243_consen 111 VLNELPS---AAR---AELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQLLEKGAH 162 (274)
T ss_pred hhhcCCc---hHH---HHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHHhhCCCc
Confidence 4222222 112 4788888887766 55553 2222 2344566777666654
No 271
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=93.87 E-value=0.35 Score=46.78 Aligned_cols=113 Identities=12% Similarity=0.081 Sum_probs=62.8
Q ss_pred CCCeEEEEeccc-cHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc-CCCcEEEEEcc-ccchhhhhhccCCCcEeEEEEe
Q 021567 125 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLS-GITNGYFIATN-ATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGcGt-G~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~-~~~Nv~f~~~D-a~~ll~~~~~~~~~s~D~V~i~ 201 (311)
.+..||.+|||. |..+..+|+......++++|.++...+.+++. +...+.....+ ...-+.... ....+|.++-.
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~--~~~~~D~vld~ 261 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELT--GGRGPDVCIDA 261 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHc--CCCCCCEEEEC
Confidence 357899999998 99999999987544699999877767766655 32211111111 111111111 22357766432
Q ss_pred CCC-----CCCCCchhh--hhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 202 CPN-----PDFNRPEHR--WRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 202 fpd-----P~~k~~h~k--rRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
... +|.+-..+. .+--....++++.+.|+|+|.++...
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 110 000000000 00001356788899999999998754
No 272
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=93.72 E-value=0.18 Score=40.45 Aligned_cols=86 Identities=13% Similarity=0.143 Sum_probs=60.4
Q ss_pred cccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccch---hhhhhccCCCcEeEEEEeCCCCCCCCch
Q 021567 135 GNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATST---FRSIVASYPGKLILVSIQCPNPDFNRPE 211 (311)
Q Consensus 135 GtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~l---l~~~~~~~~~s~D~V~i~fpdP~~k~~h 211 (311)
|.|..++.+|+... .+++++|.++.-++.+++.|.+. ++..+-.++ +.... ....+|.|+-.-..
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga~~--~~~~~~~~~~~~i~~~~--~~~~~d~vid~~g~------- 68 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKELGADH--VIDYSDDDFVEQIRELT--GGRGVDVVIDCVGS------- 68 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTTESE--EEETTTSSHHHHHHHHT--TTSSEEEEEESSSS-------
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhcccc--ccccccccccccccccc--ccccceEEEEecCc-------
Confidence 56899999999875 99999999988888888777432 233222222 22222 23478888654321
Q ss_pred hhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 212 HRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 212 ~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+..++....+|+|+|.+.+..
T Consensus 69 -------~~~~~~~~~~l~~~G~~v~vg 89 (130)
T PF00107_consen 69 -------GDTLQEAIKLLRPGGRIVVVG 89 (130)
T ss_dssp -------HHHHHHHHHHEEEEEEEEEES
T ss_pred -------HHHHHHHHHHhccCCEEEEEE
Confidence 377888999999999999864
No 273
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=93.64 E-value=0.19 Score=44.65 Aligned_cols=102 Identities=17% Similarity=0.238 Sum_probs=63.0
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH----HcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~----~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
.+.+|||+|+|+|-..+.-|+.. ...++..|+...+.+.+. .++ -++.|...|+.- .+..+|++..
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~ang-v~i~~~~~d~~g--------~~~~~Dl~La 148 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANG-VSILFTHADLIG--------SPPAFDLLLA 148 (218)
T ss_pred ccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhcc-ceeEEeeccccC--------CCcceeEEEe
Confidence 46899999999999999988874 356888887655555443 333 468888887643 3678999875
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHH
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV 244 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~ 244 (311)
. |-.+....+ .+++....++...|-.+++-+..+.|
T Consensus 149 g--Dlfy~~~~a------~~l~~~~~~l~~~g~~vlvgdp~R~~ 184 (218)
T COG3897 149 G--DLFYNHTEA------DRLIPWKDRLAEAGAAVLVGDPGRAY 184 (218)
T ss_pred e--ceecCchHH------HHHHHHHHHHHhCCCEEEEeCCCCCC
Confidence 4 322221111 24555334444445455554444544
No 274
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=93.59 E-value=0.18 Score=42.85 Aligned_cols=102 Identities=16% Similarity=0.160 Sum_probs=55.1
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCC
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP 205 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP 205 (311)
..-|||+|=|+|..=-.|-+.+|+..++.+|..-.+.-.+. .+.=.++.||+.+.++. .+........++..+-.-
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~---P~~~~~ilGdi~~tl~~-~~~~g~~a~laHaD~G~g 104 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSST---PPEEDLILGDIRETLPA-LARFGAGAALAHADIGTG 104 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG------GGGEEES-HHHHHHH-HHHH-S-EEEEEE----S
T ss_pred CCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCC---CchHheeeccHHHHhHH-HHhcCCceEEEEeecCCC
Confidence 35699999999999999999999999999996433322211 12235889999988765 222245556665543211
Q ss_pred CCCCchhhhhhhH-HHHHHHHHhcccCCeEEE
Q 021567 206 DFNRPEHRWRMVQ-RSLVEAVSDLLVHDGKVF 236 (311)
Q Consensus 206 ~~k~~h~krRl~~-~~~l~~i~rvLkpGG~l~ 236 (311)
. ..+.... ..+-..+..+|.|||.++
T Consensus 105 ~-----~~~d~a~a~~lspli~~~la~gGi~v 131 (160)
T PF12692_consen 105 D-----KEKDDATAAWLSPLIAPVLAPGGIMV 131 (160)
T ss_dssp ------HHHHHHHHHHHHHHHGGGEEEEEEEE
T ss_pred C-----cchhHHHHHhhhHHHHHHhcCCcEEE
Confidence 1 1111111 234446789999999875
No 275
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=93.42 E-value=0.55 Score=46.01 Aligned_cols=112 Identities=16% Similarity=0.183 Sum_probs=63.0
Q ss_pred CCeEEEEeccccHHHHHHHh--------h-------CCCCeEEEEchH-----H--HHHHHHHH------c----CCCcE
Q 021567 126 QPLVVDIGSGNGLFLLGMAR--------K-------RKDLNFLGLELV-----T--HCRDSLQL------S----GITNG 173 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~--------~-------~p~~~vvGiDi~-----~--~a~~~a~~------~----~~~Nv 173 (311)
.-.|+|+|||+|..++.+.. + .|+.++..-|+- . ..+...++ . .-.+-
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 35799999999987755421 1 356788888841 1 11111000 0 00122
Q ss_pred EEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCc------h-----hhh----------------hhhH---HHHHH
Q 021567 174 YFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRP------E-----HRW----------------RMVQ---RSLVE 223 (311)
Q Consensus 174 ~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~------h-----~kr----------------Rl~~---~~~l~ 223 (311)
.|+.+=.-.+...+| ++++++.++..+.-.|..+. + .|. +-.+ ..||+
T Consensus 144 ~f~~gvpGSFY~RLf--P~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~ 221 (386)
T PLN02668 144 YFAAGVPGSFYRRLF--PARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLR 221 (386)
T ss_pred eEEEecCcccccccc--CCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHH
Confidence 455544444555566 58999999877654554320 0 000 0001 35666
Q ss_pred HHHhcccCCeEEEEEe
Q 021567 224 AVSDLLVHDGKVFLQS 239 (311)
Q Consensus 224 ~i~rvLkpGG~l~~~t 239 (311)
.=++-|+|||++++..
T Consensus 222 ~Ra~ELvpGG~mvl~~ 237 (386)
T PLN02668 222 ARAQEMKRGGAMFLVC 237 (386)
T ss_pred HHHHHhccCcEEEEEE
Confidence 6678899999999974
No 276
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=93.41 E-value=0.46 Score=43.76 Aligned_cols=69 Identities=14% Similarity=0.112 Sum_probs=46.9
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH----cCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~----~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
..+|+|||||.--+++..-...|+..|+|+|+...+.+.+.. .+ .+......|...- + +..+.|+..+.
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~-~~~~~~v~Dl~~~-----~-~~~~~DlaLll 178 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLG-VPHDARVRDLLSD-----P-PKEPADLALLL 178 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT--CEEEEEE-TTTS-----H-TTSEESEEEEE
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhC-CCcceeEeeeecc-----C-CCCCcchhhHH
Confidence 578999999999999988888888999999986655444332 23 3566666676543 1 46778887765
No 277
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=93.30 E-value=0.78 Score=42.69 Aligned_cols=123 Identities=15% Similarity=0.104 Sum_probs=77.1
Q ss_pred eEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCC
Q 021567 128 LVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDF 207 (311)
Q Consensus 128 ~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~ 207 (311)
+++|+-||.|.+...+.+.. -..+.++|+.+.|.+..+.+- ++. .+++|+.++...-+ ...+|.++..+|-.-+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G-~~~v~a~e~~~~a~~~~~~N~-~~~-~~~~Di~~~~~~~~---~~~~D~l~~gpPCq~f 75 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG-FEIVAANEIDKSAAETYEANF-PNK-LIEGDITKIDEKDF---IPDIDLLTGGFPCQPF 75 (275)
T ss_pred cEEEEccCcchHHHHHHHcC-CEEEEEEeCCHHHHHHHHHhC-CCC-CccCccccCchhhc---CCCCCEEEeCCCChhh
Confidence 48999999999988887763 236889999998888776542 232 67788888732111 3569999988775543
Q ss_pred CCch-------hhhhhhHHHHHHHHHhcccCCeEEEEE-------eCcHHHHHHHHHHHHhcCCCc
Q 021567 208 NRPE-------HRWRMVQRSLVEAVSDLLVHDGKVFLQ-------SDIEEVMLRMKQQFLEYGKGK 259 (311)
Q Consensus 208 k~~h-------~krRl~~~~~l~~i~rvLkpGG~l~~~-------tD~~~~~~~~~~~l~~~g~~~ 259 (311)
.... .+..++ ..+++- .+.++|.=. ++. .+....+..+++.+++.|+..
T Consensus 76 S~ag~~~~~~d~r~~L~-~~~~~~-i~~~~P~~~-v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~ 138 (275)
T cd00315 76 SIAGKRKGFEDTRGTLF-FEIIRI-LKEKKPKYF-LLENVKGLLTHDNGNTLKVILNTLEELGYNV 138 (275)
T ss_pred hHHhhcCCCCCchHHHH-HHHHHH-HHhcCCCEE-EEEcCcchhccCchHHHHHHHHHHHhCCcEE
Confidence 3211 111122 344433 334467633 332 233456778888899988754
No 278
>PF00162 PGK: Phosphoglycerate kinase; InterPro: IPR001576 Phosphoglycerate kinase (2.7.2.3 from EC) (PGK) is an enzyme that catalyses the formation of ATP to ADP and vice versa. In the second step of the second phase in glycolysis, 1,3-diphosphoglycerate is converted to 3-phosphoglycerate, forming one molecule of ATP. If the reverse were to occur, one molecule of ADP would be formed. This reaction is essential in most cells for the generation of ATP in aerobes, for fermentation in anaerobes and for carbon fixation in plants. PGK is found in all living organisms and its sequence has been highly conserved throughout evolution. The enzyme exists as a monomer containing two nearly equal-sized domains that correspond to the N- and C-termini of the protein (the last 15 C-terminal residues loop back into the N-terminal domain). 3-phosphoglycerate (3-PG) binds to the N-terminal, while the nucleotide substrates, MgATP or MgADP, bind to the C-terminal domain of the enzyme. This extended two-domain structure is associated with large-scale 'hinge-bending' conformational changes, similar to those found in hexokinase []. At the core of each domain is a 6-stranded parallel beta-sheet surrounded by alpha helices. Domain 1 has a parallel beta-sheet of six strands with an order of 342156, while domain 2 has a parallel beta-sheet of six strands with an order of 321456. Analysis of the reversible unfolding of yeast phosphoglycerate kinase leads to the conclusion that the two lobes are capable of folding independently, consistent with the presence of intermediates on the folding pathway with a single domain folded []. Phosphoglycerate kinase (PGK) deficiency is associated with haemolytic anaemia and mental disorders in man []. This group represents a phosphoglycerate kinase.; GO: 0004618 phosphoglycerate kinase activity, 0006096 glycolysis; PDB: 1PHP_A 1V6S_A 2IE8_A 1ZMR_A 16PK_A 13PK_B 2P9Q_A 2P9T_A 2PAA_B 3OZA_A ....
Probab=93.30 E-value=0.15 Score=49.83 Aligned_cols=54 Identities=19% Similarity=0.408 Sum_probs=44.5
Q ss_pred hhhHhhhhceeEEEccccccccccccchhHHHHHHHhhhhcCceeEEEcchhhHHH
Q 021567 17 WKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKA 72 (311)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 72 (311)
++.+|.++|.|+|-||.-.--.++++.|..+|++.++.. ....+...|+++++.
T Consensus 305 ~~~~i~~aktv~wNGP~GvfE~~~F~~GT~~l~~aia~~--~a~sivGGGdt~~a~ 358 (384)
T PF00162_consen 305 FSEIIKKAKTVFWNGPMGVFEIENFAEGTRALAKAIAKS--GAFSIVGGGDTAAAI 358 (384)
T ss_dssp HHHHHHT-SEEEEES-SS-TTSGGGCHHHHHHHHHHHHH--TSEEEEESHHHHHHH
T ss_pred HHHHHhCCCeEEEECCcccCchhhhhHHHHHHHHHHHhc--CCeEEEcccHHHHHH
Confidence 678999999999999998777889999999999999998 677788888887755
No 279
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=93.01 E-value=0.39 Score=44.08 Aligned_cols=102 Identities=15% Similarity=0.159 Sum_probs=69.0
Q ss_pred CCCeEEEEeccccHHHHHHHhh-CCCCeEEEEchHHHHHHHHH--HcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTHCRDSLQ--LSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~-~p~~~vvGiDi~~~a~~~a~--~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
.+..||=+|.++|......+.. -|+..|+++|.+..+-+.+- ++.-+|+--+.-||..-..- ...-+-+|.|+..
T Consensus 156 pGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KY--RmlVgmVDvIFaD 233 (317)
T KOG1596|consen 156 PGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKY--RMLVGMVDVIFAD 233 (317)
T ss_pred CCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchhe--eeeeeeEEEEecc
Confidence 4789999999999999988876 78899999998654322221 12237999999999864211 1113478888777
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.+.|. .-|+ +.-....-||+||-|.++
T Consensus 234 vaqpd------q~Ri----vaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 234 VAQPD------QARI----VALNAQYFLKNGGHFVIS 260 (317)
T ss_pred CCCch------hhhh----hhhhhhhhhccCCeEEEE
Confidence 66553 1122 222455679999999885
No 280
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=92.94 E-value=0.43 Score=42.50 Aligned_cols=105 Identities=15% Similarity=0.078 Sum_probs=65.5
Q ss_pred CCCeEEEEeccccHHHHHHHhh-CCCCeEEEEch--------HH-HHHHH-HHHcCCCcEEEEEccccchhhhhhccCCC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEL--------VT-HCRDS-LQLSGITNGYFIATNATSTFRSIVASYPG 193 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~-~p~~~vvGiDi--------~~-~a~~~-a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~ 193 (311)
.+.+|+|+=.|.|.++.-++.. .|...|++.=- .+ ..+.. +++....|++.+-.+...+ . ++.
T Consensus 48 pg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~-----~-~pq 121 (238)
T COG4798 48 PGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVAL-----G-APQ 121 (238)
T ss_pred CCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCccccc-----C-CCC
Confidence 4789999999999999999886 56667777641 11 11222 2233456777666665554 1 355
Q ss_pred cEeEEEEe--CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 194 KLILVSIQ--CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 194 s~D~V~i~--fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
..|.+..+ +-|-+.+.-|. -.-..+..++++.|||||.+.+.
T Consensus 122 ~~d~~~~~~~yhdmh~k~i~~---~~A~~vna~vf~~LKPGGv~~V~ 165 (238)
T COG4798 122 KLDLVPTAQNYHDMHNKNIHP---ATAAKVNAAVFKALKPGGVYLVE 165 (238)
T ss_pred cccccccchhhhhhhccccCc---chHHHHHHHHHHhcCCCcEEEEE
Confidence 66666432 22222222221 12257888999999999999884
No 281
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=92.54 E-value=0.63 Score=44.24 Aligned_cols=77 Identities=13% Similarity=0.015 Sum_probs=54.2
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcC---CCcEEEEEccccchhhhhhcc-CCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG---ITNGYFIATNATSTFRSIVAS-YPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~---~~Nv~f~~~Da~~ll~~~~~~-~~~s~D~V~i 200 (311)
++..+||-=.|.|.++..+.++.|+..++|+|....|++.+++.- .+++.+++++-.++...+-.. ....+|.|.+
T Consensus 20 ~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~l~~~~~~~~~dgiL~ 99 (310)
T PF01795_consen 20 PGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDEYLKELNGINKVDGILF 99 (310)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHHHHHHTTTTS-EEEEEE
T ss_pred CCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHHHHHHccCCCccCEEEE
Confidence 467999999999999999999999999999999999998876431 357999999988774322222 2357888865
Q ss_pred e
Q 021567 201 Q 201 (311)
Q Consensus 201 ~ 201 (311)
.
T Consensus 100 D 100 (310)
T PF01795_consen 100 D 100 (310)
T ss_dssp E
T ss_pred c
Confidence 4
No 282
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.10 E-value=0.11 Score=44.98 Aligned_cols=121 Identities=17% Similarity=0.174 Sum_probs=71.7
Q ss_pred CCeEEEEecc-ccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc-------CCCcEEEEEccccchhhhhhccCCCcEeE
Q 021567 126 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS-------GITNGYFIATNATSTFRSIVASYPGKLIL 197 (311)
Q Consensus 126 ~~~vLDIGcG-tG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~-------~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~ 197 (311)
+..|||+|-| ||-.++-+|...|+..|.-.|-.+++.+++++- +++.+..++-+.... +. ......||.
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~a-qs--q~eq~tFDi 106 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGA-QS--QQEQHTFDI 106 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhh-HH--HHhhCcccE
Confidence 4679999999 566677778889999999999766666655432 223333333222221 10 112458998
Q ss_pred EEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcH-HHHHHHHHHHHhcCC
Q 021567 198 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE-EVMLRMKQQFLEYGK 257 (311)
Q Consensus 198 V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~-~~~~~~~~~l~~~g~ 257 (311)
|... |=-|-+.|| ..+++-|.+.|+|.|.-.+.+.-+ +-.+..++.....|+
T Consensus 107 IlaA--DClFfdE~h------~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~~gf 159 (201)
T KOG3201|consen 107 ILAA--DCLFFDEHH------ESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGTVGF 159 (201)
T ss_pred EEec--cchhHHHHH------HHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHhcee
Confidence 8643 222222233 589999999999999876654221 122333444455554
No 283
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=91.93 E-value=0.22 Score=46.13 Aligned_cols=128 Identities=18% Similarity=0.158 Sum_probs=66.2
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH--------------------HHcC-----------C-Cc
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL--------------------QLSG-----------I-TN 172 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a--------------------~~~~-----------~-~N 172 (311)
.+.++||||||+--+-.--|..+ -.+++..|.++..++.+ ...| + ..
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~-f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEW-FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGT-EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHHh-hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 35689999999955532223222 23789999643222111 0011 0 11
Q ss_pred E-EEEEccccchhhhhhcc---CCCcEeEEEEeCCCC-CCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe--------
Q 021567 173 G-YFIATNATSTFRSIVAS---YPGKLILVSIQCPNP-DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS-------- 239 (311)
Q Consensus 173 v-~f~~~Da~~ll~~~~~~---~~~s~D~V~i~fpdP-~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t-------- 239 (311)
| .++.+|+... + .++. -+..+|.|+..|.-- -.++ +-.....++.+.++|||||.|++..
T Consensus 135 Vk~Vv~cDV~~~-~-pl~~~~~~p~~~D~v~s~fcLE~a~~d-----~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~ 207 (256)
T PF01234_consen 135 VKQVVPCDVTQP-N-PLDPPVVLPPKFDCVISSFCLESACKD-----LDEYRRALRNISSLLKPGGHLILAGVLGSTYYM 207 (256)
T ss_dssp EEEEEE--TTSS-S-TTTTS-SS-SSEEEEEEESSHHHH-SS-----HHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEE
T ss_pred hceEEEeeccCC-C-CCCccccCccchhhhhhhHHHHHHcCC-----HHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEE
Confidence 3 3677888664 2 1211 123599988776310 0001 1233688999999999999999852
Q ss_pred ------CcHHH-HHHHHHHHHhcCCCce
Q 021567 240 ------DIEEV-MLRMKQQFLEYGKGKL 260 (311)
Q Consensus 240 ------D~~~~-~~~~~~~l~~~g~~~~ 260 (311)
....+ -+.+.+.+++.|+...
T Consensus 208 vG~~~F~~l~l~ee~v~~al~~aG~~i~ 235 (256)
T PF01234_consen 208 VGGHKFPCLPLNEEFVREALEEAGFDIE 235 (256)
T ss_dssp ETTEEEE---B-HHHHHHHHHHTTEEEE
T ss_pred ECCEecccccCCHHHHHHHHHHcCCEEE
Confidence 11112 3455677788887654
No 284
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=91.88 E-value=1.7 Score=42.20 Aligned_cols=114 Identities=14% Similarity=0.082 Sum_probs=68.9
Q ss_pred CCCeEEEEeccccHHHHHHHhh-CC---CCeEEEEchHHH----HHHHHHHcCCCcEEEEEccccchhhhhh-----ccC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK-RK---DLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIV-----ASY 191 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~-~p---~~~vvGiDi~~~----a~~~a~~~~~~Nv~f~~~Da~~ll~~~~-----~~~ 191 (311)
++.+|||.|...|.=+++|.+. ++ ...+++=|.... .+.........|+.....|+... +... +..
T Consensus 155 p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~-p~~~~~~~~~~~ 233 (375)
T KOG2198|consen 155 PGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLF-PNIYLKDGNDKE 233 (375)
T ss_pred CCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceec-cccccccCchhh
Confidence 4789999999999999888765 32 237899896432 22222222335666666666554 2211 112
Q ss_pred CCcEeEEEEeCC---CCCCCC------c-hhhhh-----hhHHHHHHHHHhcccCCeEEEEEe
Q 021567 192 PGKLILVSIQCP---NPDFNR------P-EHRWR-----MVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 192 ~~s~D~V~i~fp---dP~~k~------~-h~krR-----l~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
...||.|.+.-| |-+.++ . ....| .++-.+|..-.+.||+||.++-+|
T Consensus 234 ~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYST 296 (375)
T KOG2198|consen 234 QLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYST 296 (375)
T ss_pred hhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEec
Confidence 235888876543 211111 1 11112 234688999999999999999876
No 285
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=91.29 E-value=0.41 Score=39.41 Aligned_cols=75 Identities=9% Similarity=0.057 Sum_probs=49.8
Q ss_pred cEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHH
Q 021567 172 NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQ 251 (311)
Q Consensus 172 Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~ 251 (311)
++.+..+|+.+.++.+ +..+|.+++.=-.| .+.+ .+=+.++++.++++++|||.+.-.| -...+.+.
T Consensus 32 ~L~L~~gDa~~~l~~l----~~~~Da~ylDgFsP---~~nP--elWs~e~~~~l~~~~~~~~~l~Tys----~a~~Vr~~ 98 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQL----DARFDAWYLDGFSP---AKNP--ELWSEELFKKLARLSKPGGTLATYS----SAGAVRRA 98 (124)
T ss_dssp EEEEEES-HHHHHHHB-----T-EEEEEE-SS-T---TTSG--GGSSHHHHHHHHHHEEEEEEEEES------BHHHHHH
T ss_pred EEEEEEcHHHHHHHhC----cccCCEEEecCCCC---cCCc--ccCCHHHHHHHHHHhCCCcEEEEee----chHHHHHH
Confidence 5788999999886542 47899998861111 1111 2344799999999999999987544 24467888
Q ss_pred HHhcCCCc
Q 021567 252 FLEYGKGK 259 (311)
Q Consensus 252 l~~~g~~~ 259 (311)
|.+.|+..
T Consensus 99 L~~aGF~v 106 (124)
T PF05430_consen 99 LQQAGFEV 106 (124)
T ss_dssp HHHCTEEE
T ss_pred HHHcCCEE
Confidence 99999864
No 286
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=91.20 E-value=8.7 Score=35.29 Aligned_cols=124 Identities=14% Similarity=0.112 Sum_probs=64.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHH----HHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~----~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
.+..||=+|=.-- .++++|-..+..+++-+|+.++.++ .+++.|++ ++.++.|+.+-++.- ..+.||.++.
T Consensus 44 ~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~~LP~~---~~~~fD~f~T 118 (243)
T PF01861_consen 44 EGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRDPLPEE---LRGKFDVFFT 118 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS---TT---TSS-BSEEEE
T ss_pred cCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc-eEEEEecccccCCHH---HhcCCCEEEe
Confidence 4678999885443 3455555566789999998765443 34556775 999999988865432 2589999977
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCe-EEEEEeCcHH--HH--HHHHHHHHhcCCCceee
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDG-KVFLQSDIEE--VM--LRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG-~l~~~tD~~~--~~--~~~~~~l~~~g~~~~~~ 262 (311)
. +|+ ....- .-|+.+....||.-| ..++..-+.+ .. ..+.+.+.+.|+....+
T Consensus 119 D--PPy--T~~G~-----~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i~di 176 (243)
T PF01861_consen 119 D--PPY--TPEGL-----KLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLVITDI 176 (243)
T ss_dssp -----S--SHHHH-----HHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--EEEEE
T ss_pred C--CCC--CHHHH-----HHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcCHHHH
Confidence 6 333 22221 478888889998755 5555432222 33 34667777888754433
No 287
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=90.83 E-value=0.63 Score=41.98 Aligned_cols=109 Identities=13% Similarity=0.191 Sum_probs=68.4
Q ss_pred CeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhc-cCCCcEeEEE----Ee
Q 021567 127 PLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVA-SYPGKLILVS----IQ 201 (311)
Q Consensus 127 ~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~-~~~~s~D~V~----i~ 201 (311)
-++|||||=+....+.. .+-..++.||+... .. .+.+.|-.+. .+| .+++.||+|. ++
T Consensus 53 lrlLEVGals~~N~~s~---~~~fdvt~IDLns~------~~-----~I~qqDFm~r---plp~~~~e~FdvIs~SLVLN 115 (219)
T PF11968_consen 53 LRLLEVGALSTDNACST---SGWFDVTRIDLNSQ------HP-----GILQQDFMER---PLPKNESEKFDVISLSLVLN 115 (219)
T ss_pred ceEEeecccCCCCcccc---cCceeeEEeecCCC------CC-----CceeeccccC---CCCCCcccceeEEEEEEEEe
Confidence 58999999866655443 33456999998431 11 2345554443 122 1357888885 44
Q ss_pred C-CCCCCCCchhhhhhhHHHHHHHHHhcccCCeE-----EEEEe-----CcHHHH--HHHHHHHHhcCCCceee
Q 021567 202 C-PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGK-----VFLQS-----DIEEVM--LRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 202 f-pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~-----l~~~t-----D~~~~~--~~~~~~l~~~g~~~~~~ 262 (311)
| |+|- .| -+.+..+++.|+|+|. +++.+ ++..|. +...+.+...|+..+..
T Consensus 116 fVP~p~-------~R---G~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~ 179 (219)
T PF11968_consen 116 FVPDPK-------QR---GEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKY 179 (219)
T ss_pred eCCCHH-------HH---HHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEE
Confidence 4 5552 22 3789999999999999 88864 233342 35567778888875533
No 288
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=90.45 E-value=0.97 Score=41.67 Aligned_cols=118 Identities=14% Similarity=0.124 Sum_probs=65.0
Q ss_pred CCeEEEEeccccHHHHHHHh---h--CCCCeEEEEch-------H-------------------HHHHHHHHHc----CC
Q 021567 126 QPLVVDIGSGNGLFLLGMAR---K--RKDLNFLGLEL-------V-------------------THCRDSLQLS----GI 170 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~---~--~p~~~vvGiDi-------~-------------------~~a~~~a~~~----~~ 170 (311)
...++|.||=.|..++.++. . .++.++++.|- . ....+.++++ ++
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl 154 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL 154 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC
Confidence 46799999999987766543 2 35678999991 0 0133334332 32
Q ss_pred --CcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHH---H
Q 021567 171 --TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV---M 245 (311)
Q Consensus 171 --~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~---~ 245 (311)
+|++++.|...+.++. .+...+..+.+.+ |- .. -....|+.++..|.|||.++| |+... .
T Consensus 155 ~~~~v~~vkG~F~dTLp~---~p~~~IAll~lD~-Dl--Ye-------sT~~aLe~lyprl~~GGiIi~--DDY~~~gcr 219 (248)
T PF05711_consen 155 LDDNVRFVKGWFPDTLPD---APIERIALLHLDC-DL--YE-------STKDALEFLYPRLSPGGIIIF--DDYGHPGCR 219 (248)
T ss_dssp SSTTEEEEES-HHHHCCC----TT--EEEEEE----S--HH-------HHHHHHHHHGGGEEEEEEEEE--SSTTTHHHH
T ss_pred CcccEEEECCcchhhhcc---CCCccEEEEEEec-cc--hH-------HHHHHHHHHHhhcCCCeEEEE--eCCCChHHH
Confidence 5899999998776542 1345676666653 11 11 114789999999999999987 33222 2
Q ss_pred HHHHHHHHhcCCC
Q 021567 246 LRMKQQFLEYGKG 258 (311)
Q Consensus 246 ~~~~~~l~~~g~~ 258 (311)
+.+-+.+.++|..
T Consensus 220 ~AvdeF~~~~gi~ 232 (248)
T PF05711_consen 220 KAVDEFRAEHGIT 232 (248)
T ss_dssp HHHHHHHHHTT--
T ss_pred HHHHHHHHHcCCC
Confidence 2334445566653
No 289
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=90.42 E-value=1.4 Score=44.57 Aligned_cols=114 Identities=17% Similarity=0.128 Sum_probs=67.2
Q ss_pred CCCeEEEEeccccHHHHHHHhhCC----CCeEEEEchHHHHHHHH----HHcCCC-cEEEEEccccchhhhhh-ccCCCc
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRK----DLNFLGLELVTHCRDSL----QLSGIT-NGYFIATNATSTFRSIV-ASYPGK 194 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p----~~~vvGiDi~~~a~~~a----~~~~~~-Nv~f~~~Da~~ll~~~~-~~~~~s 194 (311)
...+|+|-.||+|.++...++... +..+.|.|+.......+ --+|+. ++...++|...- +..- ....+.
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~-~~~~~~~~~~~ 264 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSN-PKHDDKDDKGK 264 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccC-CcccccCCccc
Confidence 345899999999999988876532 37799999754433333 234554 455666665443 1000 112366
Q ss_pred EeEEEEeCCCC---CCCCc----hhhhhh---------hH-HHHHHHHHhcccCCeEEEEEe
Q 021567 195 LILVSIQCPNP---DFNRP----EHRWRM---------VQ-RSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 195 ~D~V~i~fpdP---~~k~~----h~krRl---------~~-~~~l~~i~rvLkpGG~l~~~t 239 (311)
+|.|..|-|.- |-... ...++. -. -.|+..+...|+|||+..+..
T Consensus 265 ~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl 326 (489)
T COG0286 265 FDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVL 326 (489)
T ss_pred eeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEe
Confidence 99887773321 11110 000000 01 589999999999988766653
No 290
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=90.11 E-value=3.2 Score=38.28 Aligned_cols=105 Identities=19% Similarity=0.166 Sum_probs=60.3
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchH--HHHHHHH------HHcCC-CcEEEE---EccccchhhhhhccCCC
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV--THCRDSL------QLSGI-TNGYFI---ATNATSTFRSIVASYPG 193 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~--~~a~~~a------~~~~~-~Nv~f~---~~Da~~ll~~~~~~~~~ 193 (311)
...+||+|.|+|-.++..|... ..+|+--|.. ...++.. +.++. .++... -+++.+. ... ..
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~-~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~-~~~----~~ 160 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLL-GAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDV-SFR----LP 160 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHh-cceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccH-hhc----cC
Confidence 4579999999997777777653 5788888842 1222111 11111 133332 2333332 111 22
Q ss_pred c-EeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHH
Q 021567 194 K-LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV 244 (311)
Q Consensus 194 s-~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~ 244 (311)
. +|+|... |.+....+. +.++.-++..|..+|.+++.+.-+.-
T Consensus 161 ~~~Dlilas--Dvvy~~~~~------e~Lv~tla~ll~~~~~i~l~~~lr~~ 204 (248)
T KOG2793|consen 161 NPFDLILAS--DVVYEEESF------EGLVKTLAFLLAKDGTIFLAYPLRRD 204 (248)
T ss_pred CcccEEEEe--eeeecCCcc------hhHHHHHHHHHhcCCeEEEEEecccc
Confidence 2 7888655 554433222 57888889999999988888765443
No 291
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=89.82 E-value=1.6 Score=40.61 Aligned_cols=124 Identities=19% Similarity=0.127 Sum_probs=77.9
Q ss_pred eEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCC
Q 021567 128 LVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDF 207 (311)
Q Consensus 128 ~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~ 207 (311)
+++|+-||-|.+.+.+.+.. -..+.++|+.+.|.+.-+.+-. ....+|+.++....++ . .+|+++..+|-.-+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag-~~~~~a~e~~~~a~~~y~~N~~---~~~~~Di~~~~~~~l~--~-~~D~l~ggpPCQ~f 74 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG-FEVVWAVEIDPDACETYKANFP---EVICGDITEIDPSDLP--K-DVDLLIGGPPCQGF 74 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT-EEEEEEEESSHHHHHHHHHHHT---EEEESHGGGCHHHHHH--H-T-SEEEEE---TTT
T ss_pred cEEEEccCccHHHHHHHhcC-cEEEEEeecCHHHHHhhhhccc---cccccccccccccccc--c-cceEEEeccCCceE
Confidence 58999999999999998874 2468999999888777654422 8889999988544443 2 59999999886655
Q ss_pred CCchhhh------hhhHHHHHHHHHhcccCCeEEEEE-------eCcHHHHHHHHHHHHhcCCCce
Q 021567 208 NRPEHRW------RMVQRSLVEAVSDLLVHDGKVFLQ-------SDIEEVMLRMKQQFLEYGKGKL 260 (311)
Q Consensus 208 k~~h~kr------Rl~~~~~l~~i~rvLkpGG~l~~~-------tD~~~~~~~~~~~l~~~g~~~~ 260 (311)
.....++ ..+-..+++-+ +.++|.-.+ +. .+....++.+++.|++.|+...
T Consensus 75 S~ag~~~~~~d~r~~L~~~~~~~v-~~~~Pk~~~-~ENV~~l~~~~~~~~~~~i~~~l~~lGY~v~ 138 (335)
T PF00145_consen 75 SIAGKRKGFDDPRNSLFFEFLRIV-KELKPKYFL-LENVPGLLSSKNGEVFKEILEELEELGYNVQ 138 (335)
T ss_dssp STTSTHHCCCCHTTSHHHHHHHHH-HHHS-SEEE-EEEEGGGGTGGGHHHHHHHHHHHHHTTEEEE
T ss_pred eccccccccccccchhhHHHHHHH-hhccceEEE-ecccceeeccccccccccccccccccceeeh
Confidence 4322111 11113444433 446786544 33 2334567888999999987543
No 292
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=89.39 E-value=2.7 Score=38.99 Aligned_cols=95 Identities=12% Similarity=0.107 Sum_probs=59.2
Q ss_pred CCeEEEEecc-ccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEc-cccchhhhhhccCCCcEeEEEEeCC
Q 021567 126 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIAT-NATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 126 ~~~vLDIGcG-tG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~-Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
+..+|..|+| .|..++.+|+.. +.++++++.++...+.+++.+.+.+..... +....+ ... ....+|.++- +.
T Consensus 166 ~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~--~~~~~D~vid-~~ 240 (338)
T cd08254 166 GETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKK-AAG--LGGGFDVIFD-FV 240 (338)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHH-HHh--cCCCceEEEE-CC
Confidence 5677778887 488888899876 577999998776666666566533221111 111111 111 3456887643 22
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.. ...++++.+.|+++|.++..
T Consensus 241 g~-------------~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 241 GT-------------QPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred CC-------------HHHHHHHHHHhhcCCEEEEE
Confidence 11 25688889999999999864
No 293
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=89.12 E-value=0.63 Score=40.69 Aligned_cols=46 Identities=15% Similarity=0.233 Sum_probs=33.7
Q ss_pred HhhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH
Q 021567 118 SAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ 166 (311)
Q Consensus 118 ~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~ 166 (311)
...+.+ ++.+|||-=||+|..+.+..+. +.+++|+|+.+...+.|+
T Consensus 185 I~~~t~-~gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a~ 230 (231)
T PF01555_consen 185 IKASTN-PGDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIAK 230 (231)
T ss_dssp HHHHS--TT-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHHH
T ss_pred HHhhhc-cceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHhc
Confidence 344445 5899999999999999888877 578999999887766654
No 294
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=89.07 E-value=0.84 Score=45.30 Aligned_cols=50 Identities=28% Similarity=0.442 Sum_probs=35.9
Q ss_pred CeEEEEeccccHHHHHHHhhCCCCeEEEEch----HHHHHHHHHHcCC-CcEEEEE
Q 021567 127 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGI-TNGYFIA 177 (311)
Q Consensus 127 ~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi----~~~a~~~a~~~~~-~Nv~f~~ 177 (311)
-.+||||+|||.++.-.++...+ .++++|. ..-|++...++|. +++.++.
T Consensus 68 v~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~arkI~~kng~SdkI~vIn 122 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARKIMHKNGMSDKINVIN 122 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHHHHhcCCCccceeeec
Confidence 47999999999999888877644 5999994 4455555555664 4566554
No 295
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=88.27 E-value=3.6 Score=39.54 Aligned_cols=108 Identities=17% Similarity=0.175 Sum_probs=55.0
Q ss_pred CCeEEEEeccccHHHHHHHh--------h--------CCCCeEEEEch-----H------HHHHHHHHHcCCCcEEEEEc
Q 021567 126 QPLVVDIGSGNGLFLLGMAR--------K--------RKDLNFLGLEL-----V------THCRDSLQLSGITNGYFIAT 178 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~--------~--------~p~~~vvGiDi-----~------~~a~~~a~~~~~~Nv~f~~~ 178 (311)
.-+|+|+||.+|..++.+.. + -|..+++--|+ + ..-.+.... ..+ .|+.+
T Consensus 17 ~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~--~~~-~f~~g 93 (334)
T PF03492_consen 17 PFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKK--FRN-YFVSG 93 (334)
T ss_dssp EEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHH--TTS-EEEEE
T ss_pred ceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCC--Cce-EEEEe
Confidence 45899999999999877643 1 13457888884 1 111111212 223 33333
Q ss_pred cccchhhhhhccCCCcEeEEEEeCCCCCCCCc-----------------hhh---hhhhH-----------HHHHHHHHh
Q 021567 179 NATSTFRSIVASYPGKLILVSIQCPNPDFNRP-----------------EHR---WRMVQ-----------RSLVEAVSD 227 (311)
Q Consensus 179 Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~-----------------h~k---rRl~~-----------~~~l~~i~r 227 (311)
=.-.+...+| +++++|.++..+.-.|.... +.. ...+. ..||+.=++
T Consensus 94 vpgSFy~rLf--P~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ 171 (334)
T PF03492_consen 94 VPGSFYGRLF--PSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAE 171 (334)
T ss_dssp EES-TTS--S---TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCchhhhccC--CCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3333445566 59999999887644443310 000 00111 355666677
Q ss_pred cccCCeEEEEE
Q 021567 228 LLVHDGKVFLQ 238 (311)
Q Consensus 228 vLkpGG~l~~~ 238 (311)
-|+|||++++.
T Consensus 172 ELv~GG~mvl~ 182 (334)
T PF03492_consen 172 ELVPGGRMVLT 182 (334)
T ss_dssp HEEEEEEEEEE
T ss_pred eeccCcEEEEE
Confidence 89999999985
No 296
>PRK11524 putative methyltransferase; Provisional
Probab=88.15 E-value=0.97 Score=42.19 Aligned_cols=46 Identities=15% Similarity=0.050 Sum_probs=35.5
Q ss_pred HhhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHH
Q 021567 118 SAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ 166 (311)
Q Consensus 118 ~~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~ 166 (311)
...+.+ ++.+|||-=||+|..+++..+. +.+++|+|++++..+.+.
T Consensus 202 I~~~S~-~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~ 247 (284)
T PRK11524 202 ILASSN-PGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGL 247 (284)
T ss_pred HHHhCC-CCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHH
Confidence 344455 6899999999999999888777 679999998765444443
No 297
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=86.73 E-value=4.8 Score=38.17 Aligned_cols=75 Identities=13% Similarity=0.048 Sum_probs=56.0
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCC-eEEEEchHHHHHHHHHHcC---CCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDL-NFLGLELVTHCRDSLQLSG---ITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~-~vvGiDi~~~a~~~a~~~~---~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
+....+|.=.|.|.++..+.++.|+. +++|+|....|++.+++.- .+++.+++++-.++....-....+.+|.|.
T Consensus 23 ~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~~l~~~~i~~vDGiL 101 (314)
T COG0275 23 PDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAEALKELGIGKVDGIL 101 (314)
T ss_pred CCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHHHHHhcCCCceeEEE
Confidence 45899999999999999999998754 5999999888877776432 358999999877764322111245777774
No 298
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=86.58 E-value=1.6 Score=43.74 Aligned_cols=120 Identities=10% Similarity=0.109 Sum_probs=82.5
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc-CC---CcEEEEEccccchhhhhhc--cCCCcEeEEE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS-GI---TNGYFIATNATSTFRSIVA--SYPGKLILVS 199 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~-~~---~Nv~f~~~Da~~ll~~~~~--~~~~s~D~V~ 199 (311)
...+|=||-|.|.+...+....|...+++||+...+++-+... +. ........|....+....- ..+..+|.+.
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~ 375 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVLM 375 (482)
T ss_pred cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEEE
Confidence 5678899999999999999999999999999877777665432 11 1234455566655543321 1356788876
Q ss_pred Ee----------CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE--EeCcHHHHHHHHHHHHh
Q 021567 200 IQ----------CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL--QSDIEEVMLRMKQQFLE 254 (311)
Q Consensus 200 i~----------fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~--~tD~~~~~~~~~~~l~~ 254 (311)
+. +|.|. .+.+.+|..+...|.|.|.+.+ .|-+..+...++..+.+
T Consensus 376 ~dvds~d~~g~~~pp~~---------fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~l~~ 433 (482)
T KOG2352|consen 376 VDVDSKDSHGMQCPPPA---------FVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMNLAK 433 (482)
T ss_pred EECCCCCcccCcCCchH---------HHHHHHHHHHhhccCccceEEEEEecCCcchhHHHHHhhhh
Confidence 54 33332 3457889999999999999986 46666666666665544
No 299
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=86.55 E-value=1.4 Score=45.90 Aligned_cols=96 Identities=23% Similarity=0.513 Sum_probs=63.8
Q ss_pred eeeccCCc-----hhhHhhhhceeEEEcccc-ccccccccchhHHHHHHHhhhhcCceeEEEcchhhHHHHH-hhccchh
Q 021567 9 LSILGQGP-----WKRLLLQLQNVIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIA-KVSSSIF 81 (311)
Q Consensus 9 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~s~~ 81 (311)
..++--|| ++..+.++|.|+|-||.- |.+ +++..|...|++.++. .....+...|+++++.-. ++.+..+
T Consensus 291 ~~~lDIGp~Ti~~~~~~i~~akti~wNGP~GvfE~-~~F~~GT~~l~~aia~--~~~~svvGGGdt~aa~~~~g~~~~~s 367 (645)
T PRK13962 291 WMGLDIGPETIELFAKKIADAKTIVWNGPMGVFEF-DNFAEGTRAVAEAVAE--SGAITIIGGGDSAAAVEKLGFADKMS 367 (645)
T ss_pred CEEEeeCHHHHHHHHHHHhhCCEEEEECCCccccC-CCchHHHHHHHHHHHh--cCCeEEECchHHHHHHHHcCCccCce
Confidence 34555666 578899999999999996 665 4799999999999875 233444444455554432 3322211
Q ss_pred hhhhhhhhhhhhhhhhhccCCCchhhhh
Q 021567 82 GLNMVESGSAVWEFLKGRMLPGVSALDR 109 (311)
Q Consensus 82 ~~~~fe~~a~~wd~~~~r~~~~~~~l~~ 109 (311)
| ...+....-+++-|+..|+..++.+
T Consensus 368 -h-vSTGGGA~Le~LeGk~LPgv~aL~~ 393 (645)
T PRK13962 368 -H-ISTGGGASLEFLEGKVLPGIACLLD 393 (645)
T ss_pred -E-EcCChHHHHHHHcCCccHHHHHHhh
Confidence 1 2234567888889999999866653
No 300
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.33 E-value=3.9 Score=38.79 Aligned_cols=122 Identities=13% Similarity=0.050 Sum_probs=72.2
Q ss_pred EEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCC
Q 021567 129 VVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFN 208 (311)
Q Consensus 129 vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k 208 (311)
|+|+-||.|.+...+.+.. -..+.++|+.+.|.+..+.+- ++ .++.+|+.++....+ ..+|+++..+|-.-+.
T Consensus 1 vidLF~G~GG~~~Gl~~aG-~~~~~a~e~~~~a~~ty~~N~-~~-~~~~~Di~~~~~~~~----~~~dvl~gg~PCq~fS 73 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAG-FKCVFASEIDKYAQKTYEANF-GN-KVPFGDITKISPSDI----PDFDILLGGFPCQPFS 73 (315)
T ss_pred CEEEecCccHHHHHHHHcC-CeEEEEEeCCHHHHHHHHHhC-CC-CCCccChhhhhhhhC----CCcCEEEecCCCcccc
Confidence 5899999999999987653 224567999888877765543 33 566789888732212 3589998887754443
Q ss_pred Cchh------hhhhhHHHHHHHHHhcccCCeEEEEE-------eCcHHHHHHHHHHHHhcCCCc
Q 021567 209 RPEH------RWRMVQRSLVEAVSDLLVHDGKVFLQ-------SDIEEVMLRMKQQFLEYGKGK 259 (311)
Q Consensus 209 ~~h~------krRl~~~~~l~~i~rvLkpGG~l~~~-------tD~~~~~~~~~~~l~~~g~~~ 259 (311)
.... .|..+-..+++. .+.++|. .+++. .+....+..++..|+..|+..
T Consensus 74 ~ag~~~~~~d~r~~L~~~~~r~-i~~~~P~-~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~v 135 (315)
T TIGR00675 74 IAGKRKGFEDTRGTLFFEIVRI-LKEKKPK-FFLLENVKGLVSHDKGRTFKVIIETLEELGYKV 135 (315)
T ss_pred hhcccCCCCCchhhHHHHHHHH-HhhcCCC-EEEeeccHHHHhcccchHHHHHHHHHHhCCCEE
Confidence 2111 111111233332 2345775 33332 122245667788888888754
No 301
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=85.99 E-value=7.2 Score=40.42 Aligned_cols=96 Identities=15% Similarity=0.091 Sum_probs=63.1
Q ss_pred ccccHHHHHHHhh--CCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCch
Q 021567 134 SGNGLFLLGMARK--RKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPE 211 (311)
Q Consensus 134 cGtG~~~~~lA~~--~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h 211 (311)
||-|.++..+++. ..+..++.+|..++..+.+++.| ...+.+|+.+. +.+-...-...|.+.+..+|+.
T Consensus 406 ~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g---~~v~~GDat~~-~~L~~agi~~A~~vv~~~~d~~----- 476 (601)
T PRK03659 406 VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYG---YKVYYGDATQL-ELLRAAGAEKAEAIVITCNEPE----- 476 (601)
T ss_pred ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCC---CeEEEeeCCCH-HHHHhcCCccCCEEEEEeCCHH-----
Confidence 6777787777764 33678999999888777776554 56889999875 2111112245677777766652
Q ss_pred hhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHH
Q 021567 212 HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV 244 (311)
Q Consensus 212 ~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~ 244 (311)
. ...+-...|.+.|...++..+.++..
T Consensus 477 -----~-n~~i~~~~r~~~p~~~IiaRa~~~~~ 503 (601)
T PRK03659 477 -----D-TMKIVELCQQHFPHLHILARARGRVE 503 (601)
T ss_pred -----H-HHHHHHHHHHHCCCCeEEEEeCCHHH
Confidence 1 12344456678899999888766543
No 302
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=85.80 E-value=4.4 Score=38.96 Aligned_cols=97 Identities=14% Similarity=0.109 Sum_probs=64.2
Q ss_pred CCeEEEEeccc-cHHHHHHHhhCCCCeEEEEchHHHHHHHHHH-cCCCcEEEEEcc-ccchhhhhhccCCC-cEeEEEEe
Q 021567 126 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQL-SGITNGYFIATN-ATSTFRSIVASYPG-KLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcGt-G~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~-~~~~Nv~f~~~D-a~~ll~~~~~~~~~-s~D~V~i~ 201 (311)
..+++=+|||+ |.++..+|+......++.+|.++.-++.|++ .+.+-+.....+ ...... ....+ -+|.++--
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~---~~t~g~g~D~vie~ 245 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEIL---ELTGGRGADVVIEA 245 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHH---HHhCCCCCCEEEEC
Confidence 34899999997 6667888888888899999998888888776 333222222221 111111 11122 57877654
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
-.. +..++.+.+.++|||.+.+..
T Consensus 246 ~G~--------------~~~~~~ai~~~r~gG~v~~vG 269 (350)
T COG1063 246 VGS--------------PPALDQALEALRPGGTVVVVG 269 (350)
T ss_pred CCC--------------HHHHHHHHHHhcCCCEEEEEe
Confidence 222 367888999999999999853
No 303
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=85.63 E-value=1.3 Score=41.00 Aligned_cols=60 Identities=10% Similarity=0.118 Sum_probs=42.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhC-----CCCeEEEEch-HHH--HHHHHHHcCC-CcEEEEEccccchh
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKR-----KDLNFLGLEL-VTH--CRDSLQLSGI-TNGYFIATNATSTF 184 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~-----p~~~vvGiDi-~~~--a~~~a~~~~~-~Nv~f~~~Da~~ll 184 (311)
+...++|+|||.|.++..+++.. +...++.||. +.+ +=.+++.... ..+.=++.|+.++-
T Consensus 18 ~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~~~~~~~~~~~~~R~riDI~dl~ 86 (259)
T PF05206_consen 18 PDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADNKIRKDESEPKFERLRIDIKDLD 86 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchhhhhccCCCCceEEEEEEeeccc
Confidence 35689999999999999999886 5679999995 221 1122222211 35777888988873
No 304
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=84.69 E-value=0.93 Score=45.48 Aligned_cols=105 Identities=13% Similarity=0.151 Sum_probs=76.7
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCC-eEEEEchHHHHHHHHHH----cCCC-cEEEEEccccchhhhhhccCCCcEeEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDL-NFLGLELVTHCRDSLQL----SGIT-NGYFIATNATSTFRSIVASYPGKLILV 198 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~-~vvGiDi~~~a~~~a~~----~~~~-Nv~f~~~Da~~ll~~~~~~~~~s~D~V 198 (311)
+..+|||.=|+||--+++.|+..|+. .+++-|.++++.+.+++ ++.+ -|.-.+.||..++-.. +.....||.|
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~-~~~~~~FDvI 187 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEH-PMVAKFFDVI 187 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhc-cccccccceE
Confidence 45789999999999999999998875 78888987777665443 3333 3677788888775221 2235789998
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE-eCcH
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-SDIE 242 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~-tD~~ 242 (311)
-+ ||.=. ...||+...+.++.||.+.+. ||-.
T Consensus 188 DL---DPyGs---------~s~FLDsAvqav~~gGLL~vT~TD~a 220 (525)
T KOG1253|consen 188 DL---DPYGS---------PSPFLDSAVQAVRDGGLLCVTCTDMA 220 (525)
T ss_pred ec---CCCCC---------ccHHHHHHHHHhhcCCEEEEEecchH
Confidence 76 44311 138999999999999999985 5543
No 305
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=84.41 E-value=3.3 Score=39.58 Aligned_cols=32 Identities=19% Similarity=0.174 Sum_probs=25.6
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchH
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV 158 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~ 158 (311)
....||==|||.|.++..||...+ ++-|=|.|
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~--~~qGNEfS 181 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGF--KCQGNEFS 181 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhcc--cccccHHH
Confidence 357899999999999999999865 44566754
No 306
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=83.40 E-value=6.4 Score=37.19 Aligned_cols=95 Identities=9% Similarity=0.053 Sum_probs=56.0
Q ss_pred CCeEEEEecc-ccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 126 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 126 ~~~vLDIGcG-tG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
+..||=+||| .|..++++|+..-...++++|.++..++.+++.|.+.+ +..+-.++ ..... ..+.+|.++-....
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~v--i~~~~~~~-~~~~~-~~g~~D~vid~~G~ 245 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKL--VNPQNDDL-DHYKA-EKGYFDVSFEVSGH 245 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEE--ecCCcccH-HHHhc-cCCCCCEEEECCCC
Confidence 5667767875 34556667776533379999988877777777765432 11111111 11111 12347776533221
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
+..++...+.|++||.+.+.
T Consensus 246 --------------~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 246 --------------PSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred --------------HHHHHHHHHHhhcCCEEEEE
Confidence 25677788999999999875
No 307
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=83.39 E-value=4.8 Score=37.20 Aligned_cols=121 Identities=17% Similarity=0.173 Sum_probs=76.2
Q ss_pred CCeEEEEeccccHHHHHHHhhCCC------------CeEEEEch---HH----------------H-----------HHH
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKD------------LNFLGLEL---VT----------------H-----------CRD 163 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~------------~~vvGiDi---~~----------------~-----------a~~ 163 (311)
...|+|+|.|+|...+.+-+.+++ .+++.++. +. . ...
T Consensus 59 ~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~~ 138 (252)
T COG4121 59 ILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGCA 138 (252)
T ss_pred ceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchhH
Confidence 568999999999998777554332 34677772 10 0 011
Q ss_pred HHHHcCCCcEEEEEccccchhhhhhccCCC---cEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeC
Q 021567 164 SLQLSGITNGYFIATNATSTFRSIVASYPG---KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 240 (311)
Q Consensus 164 ~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~---s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD 240 (311)
++...|..++.++.+|+...++. .+. .+|..+..--.|- |++ .+=+++++..+++..+|||.+. |.
T Consensus 139 r~~~~g~~~l~l~~gd~~~~~p~----~~~~~~~~dAwflDgFsP~-kNP----~mW~~e~l~~~a~~~~~~~~l~--t~ 207 (252)
T COG4121 139 AAVRHGLLLLGLVIGDAGDGIPP----VPRRRPGTDAWFLDGFRPV-KNP----EMWEDELLNLMARIPYRDPTLA--TF 207 (252)
T ss_pred HhhhcchheeeeeeeehhhcCCc----ccccccCccEEecCCcccc-CCh----hhccHHHHHHHHhhcCCCCcee--ch
Confidence 12123455788899999887543 223 6788876532221 111 1234699999999999999986 32
Q ss_pred cHHHHHHHHHHHHhcCCCc
Q 021567 241 IEEVMLRMKQQFLEYGKGK 259 (311)
Q Consensus 241 ~~~~~~~~~~~l~~~g~~~ 259 (311)
. -+-...+-+++.|+..
T Consensus 208 s--sA~~vRr~L~~aGF~v 224 (252)
T COG4121 208 A--AAIAVRRRLEQAGFTV 224 (252)
T ss_pred H--HHHHHHHHHHHcCcee
Confidence 2 3446677888888764
No 308
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=82.91 E-value=6.5 Score=37.30 Aligned_cols=93 Identities=20% Similarity=0.168 Sum_probs=55.3
Q ss_pred CCCeEEEEeccc-cHHHHHHHhhCCCCeEEEEch---HHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEL---VTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGt-G~~~~~lA~~~p~~~vvGiDi---~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
.+..||=+|+|. |.++.++|+.. +.++++++. +..-++.+++.|.+.+. .+-.+..+ .. ....+|.|+-
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~---~~~~~~~~--~~-~~~~~d~vid 244 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVEELGATYVN---SSKTPVAE--VK-LVGEFDLIIE 244 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHcCCEEec---CCccchhh--hh-hcCCCCEEEE
Confidence 356778788864 66677778775 568999986 45556666666654221 11111100 00 1234676654
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.... +..+.+..+.|++||.+.+.
T Consensus 245 ~~g~--------------~~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 245 ATGV--------------PPLAFEALPALAPNGVVILF 268 (355)
T ss_pred CcCC--------------HHHHHHHHHHccCCcEEEEE
Confidence 3221 25678888999999998864
No 309
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.78 E-value=0.58 Score=40.22 Aligned_cols=44 Identities=11% Similarity=0.046 Sum_probs=30.5
Q ss_pred ccCCCcEeEEEEeCCCCCCCCchhhhhhhH----HHHHHHHHhcccCCeEEEEEeCcH
Q 021567 189 ASYPGKLILVSIQCPNPDFNRPEHRWRMVQ----RSLVEAVSDLLVHDGKVFLQSDIE 242 (311)
Q Consensus 189 ~~~~~s~D~V~i~fpdP~~k~~h~krRl~~----~~~l~~i~rvLkpGG~l~~~tD~~ 242 (311)
++.++|+|+|+.- |-..++. ..++++++|.|||||.+.++..+.
T Consensus 42 ~F~dns~d~iyae----------HvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl 89 (185)
T COG4627 42 MFEDNSVDAIYAE----------HVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDL 89 (185)
T ss_pred cCCCcchHHHHHH----------HHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCc
Confidence 3468999988643 1111111 478999999999999999975443
No 310
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=82.76 E-value=8.4 Score=34.02 Aligned_cols=98 Identities=14% Similarity=0.145 Sum_probs=59.6
Q ss_pred CCCeEEEEeccc-cHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 125 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 125 ~~~~vLDIGcGt-G~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
.+..+|-.|+|+ |..+..+++.. +.++++++.++...+.++..+..++ +...-..............+|.++-...
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~d~vi~~~~ 210 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKELGADHV--IDYKEEDLEEELRLTGGGGADVVIDAVG 210 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHhCCcee--ccCCcCCHHHHHHHhcCCCCCEEEECCC
Confidence 467899999995 77788888775 4789999987665666655543321 1111111111100112456888865433
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
.+ ..+..+.+.|+++|.+....
T Consensus 211 ~~--------------~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 211 GP--------------ETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred CH--------------HHHHHHHHhcccCCEEEEEc
Confidence 21 45667788899999998753
No 311
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=81.86 E-value=4.2 Score=37.32 Aligned_cols=191 Identities=16% Similarity=0.226 Sum_probs=96.5
Q ss_pred eeEEEcchhhHHHHHhhccchhhhhhhhhhhhhhhhhhhccCCCc---hhhhhhCCCchhhH-hhcCC--CCCCeEEEEe
Q 021567 60 CNVTVIGSMACKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGV---SALDRAFPFDIDWS-AAYHD--PAQPLVVDIG 133 (311)
Q Consensus 60 ~~~~~~g~~~~~~~~~~~~s~~~~~~fe~~a~~wd~~~~r~~~~~---~~l~~~~~~~~~~~-~~f~~--~~~~~vLDIG 133 (311)
.++-|+...|.|+... ..-++|- .-.+||..-+++-|-. ..+.... .|+. +.-+. ..+-++||||
T Consensus 16 ~siDFanp~AVk~LnK-----AlL~~fY-~v~~wdiPeg~LCPpvPgRAdYih~l---aDLL~s~~g~~~~~~i~~LDIG 86 (292)
T COG3129 16 QSIDFANPLAVKALNK-----ALLAHFY-AVRYWDIPEGFLCPPVPGRADYIHHL---ADLLASTSGQIPGKNIRILDIG 86 (292)
T ss_pred eeeccCCHHHHHHHHH-----HHHHHhc-ceeEecCCCCCcCCCCCChhHHHHHH---HHHHHhcCCCCCcCceEEEeec
Confidence 3455666666666542 2233332 4567998888766543 2222211 1111 11111 1456899999
Q ss_pred ccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH----c-CCCc-EEEE-EccccchhhhhhccCCCcEeEEEEeCCCCC
Q 021567 134 SGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----S-GITN-GYFI-ATNATSTFRSIVASYPGKLILVSIQCPNPD 206 (311)
Q Consensus 134 cGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~----~-~~~N-v~f~-~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~ 206 (311)
.|.-++=--+--+.=+..++|.|++..++..|+. + ++.+ +++. +-|-..+++.+.. .++.+|....| .|
T Consensus 87 vGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig-~nE~yd~tlCN--PP- 162 (292)
T COG3129 87 VGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIG-KNERYDATLCN--PP- 162 (292)
T ss_pred cCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcccccccccc-ccceeeeEecC--CC-
Confidence 9988774444433226899999997776666543 2 3332 5554 3444444333221 25677877665 33
Q ss_pred CCCch--------hhhhhhHHHH-HHHHHhcccCCeE---EEEEeCcHHHHHHHHHHHHhcCCCceeee
Q 021567 207 FNRPE--------HRWRMVQRSL-VEAVSDLLVHDGK---VFLQSDIEEVMLRMKQQFLEYGKGKLVLV 263 (311)
Q Consensus 207 ~k~~h--------~krRl~~~~~-l~~i~rvLkpGG~---l~~~tD~~~~~~~~~~~l~~~g~~~~~~~ 263 (311)
|.... .|++-+..++ -......|+-||. +.....-..+...|.+.....+....+++
T Consensus 163 Fh~s~~da~~gsqrk~~nl~g~l~~~~~~~~lnfggq~qelwCegGe~afi~~mv~es~afakqv~Wft 231 (292)
T COG3129 163 FHDSAADARAGSQRKRRNLGGELGPTNKLDALNFGGQQQELWCEGGEVAFIKKMVEESRAFAKQVFWFT 231 (292)
T ss_pred cchhHHHHHhcccCCcccccccccccccchhhhccCCceEEEecCcchhhHHHHHHHHHHHhhheehhe
Confidence 33211 1111110000 1233445565553 33434445666777777776665544443
No 312
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=81.67 E-value=6.4 Score=33.31 Aligned_cols=102 Identities=14% Similarity=0.132 Sum_probs=62.3
Q ss_pred cccHHHHHHHhh--CCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchh
Q 021567 135 GNGLFLLGMARK--RKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEH 212 (311)
Q Consensus 135 GtG~~~~~lA~~--~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~ 212 (311)
|.|..+..+|++ ..+..+++.|.+....+.+.+.+ +. ...+..++.. ..|.|++..|++.
T Consensus 8 GlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g---~~-~~~s~~e~~~--------~~dvvi~~v~~~~------ 69 (163)
T PF03446_consen 8 GLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAG---AE-VADSPAEAAE--------QADVVILCVPDDD------ 69 (163)
T ss_dssp --SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTT---EE-EESSHHHHHH--------HBSEEEE-SSSHH------
T ss_pred chHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhh---hh-hhhhhhhHhh--------cccceEeecccch------
Confidence 346777777765 23678999999887777776654 22 3344444422 3488888777652
Q ss_pred hhhhhHHHHHHH--HHhcccCCeEEEE-EeCcHHHHHHHHHHHHhcCCC
Q 021567 213 RWRMVQRSLVEA--VSDLLVHDGKVFL-QSDIEEVMLRMKQQFLEYGKG 258 (311)
Q Consensus 213 krRl~~~~~l~~--i~rvLkpGG~l~~-~tD~~~~~~~~~~~l~~~g~~ 258 (311)
.-++.+.. +...|++|..++- .|-......++.+.+.+.|..
T Consensus 70 ----~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~ 114 (163)
T PF03446_consen 70 ----AVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVR 114 (163)
T ss_dssp ----HHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEE
T ss_pred ----hhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccce
Confidence 11356666 7788888877764 344566677778888887754
No 313
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=80.97 E-value=16 Score=37.39 Aligned_cols=106 Identities=13% Similarity=0.048 Sum_probs=66.6
Q ss_pred ccccHHHHHHHhh--CCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCch
Q 021567 134 SGNGLFLLGMARK--RKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPE 211 (311)
Q Consensus 134 cGtG~~~~~lA~~--~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h 211 (311)
||-|.++..+++. ..+..++.+|..++..+.+++. +...+++|+.+. +.+-...-...|.+.+..+|..
T Consensus 423 ~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~---g~~~i~GD~~~~-~~L~~a~i~~a~~viv~~~~~~----- 493 (558)
T PRK10669 423 VGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER---GIRAVLGNAANE-EIMQLAHLDCARWLLLTIPNGY----- 493 (558)
T ss_pred ECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC---CCeEEEcCCCCH-HHHHhcCccccCEEEEEcCChH-----
Confidence 6777888888875 2356899999988777777653 577999999874 2111112246777777666542
Q ss_pred hhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCC
Q 021567 212 HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG 258 (311)
Q Consensus 212 ~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~ 258 (311)
. ...+-...|.+.|...++..+++.+ -.+.+++.|..
T Consensus 494 -----~-~~~iv~~~~~~~~~~~iiar~~~~~----~~~~l~~~Gad 530 (558)
T PRK10669 494 -----E-AGEIVASAREKRPDIEIIARAHYDD----EVAYITERGAN 530 (558)
T ss_pred -----H-HHHHHHHHHHHCCCCeEEEEECCHH----HHHHHHHcCCC
Confidence 0 1223334566678888888876643 22334556654
No 314
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=79.79 E-value=2.6 Score=40.84 Aligned_cols=104 Identities=20% Similarity=0.277 Sum_probs=56.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCC-eEEEEchHHHHHHH---HHHc-CCCcEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDL-NFLGLELVTHCRDS---LQLS-GITNGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~-~vvGiDi~~~a~~~---a~~~-~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
....+||+|.|.|.-+.++-.-+|+. .++-+|.+....+. +.++ .......-..|...- ...+| +...+++++
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~d-Rl~lp-~ad~ytl~i 190 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTED-RLSLP-AADLYTLAI 190 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchh-ccCCC-ccceeehhh
Confidence 45679999999999999988888875 35555544322221 1211 111111111222111 00112 345566665
Q ss_pred Ee---CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 200 IQ---CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 200 i~---fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
+. .|+-- .+ .+ ...++.+..++.|||.|++.
T Consensus 191 ~~~eLl~d~~-----ek-~i--~~~ie~lw~l~~~gg~lViv 224 (484)
T COG5459 191 VLDELLPDGN-----EK-PI--QVNIERLWNLLAPGGHLVIV 224 (484)
T ss_pred hhhhhccccC-----cc-hH--HHHHHHHHHhccCCCeEEEE
Confidence 43 12211 11 01 24899999999999999986
No 315
>PHA01634 hypothetical protein
Probab=79.50 E-value=4.1 Score=34.02 Aligned_cols=42 Identities=14% Similarity=0.027 Sum_probs=34.5
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL 167 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~ 167 (311)
.+.+|+|||.+-|..++.++-+. ...|+++|..+...+..++
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~G-AK~Vva~E~~~kl~k~~ee 69 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRG-ASFVVQYEKEEKLRKKWEE 69 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcC-ccEEEEeccCHHHHHHHHH
Confidence 46899999999999999999875 3589999987766666543
No 316
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=78.79 E-value=16 Score=34.49 Aligned_cols=88 Identities=16% Similarity=0.073 Sum_probs=55.1
Q ss_pred CCCeEEEEecc-ccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 125 AQPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 125 ~~~~vLDIGcG-tG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
.+..||=.|+| .|..+.++|+.. +.++++++.+..-++.+++.|.+.+- |..+. ....+|.++..-.
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~~~Ga~~vi----~~~~~-------~~~~~d~~i~~~~ 232 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLALALGAASAG----GAYDT-------PPEPLDAAILFAP 232 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHhCCceec----ccccc-------CcccceEEEECCC
Confidence 35678878865 455567777765 56899999877667777777764321 11111 1224565543311
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
. ...+....+.|++||++.+.
T Consensus 233 ~--------------~~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 233 A--------------GGLVPPALEALDRGGVLAVA 253 (329)
T ss_pred c--------------HHHHHHHHHhhCCCcEEEEE
Confidence 1 24577788999999999874
No 317
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=78.71 E-value=13 Score=35.39 Aligned_cols=97 Identities=15% Similarity=0.029 Sum_probs=55.6
Q ss_pred CCCeEEEEeccc-cHHHHHHHhhCCCC-eEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhcc-CCCcEeEEEEe
Q 021567 125 AQPLVVDIGSGN-GLFLLGMARKRKDL-NFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVAS-YPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGcGt-G~~~~~lA~~~p~~-~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~-~~~s~D~V~i~ 201 (311)
.+..||=.|||. |..++++|+.. +. +++++|.++.-++.+++.|.+. ++...-.+........ ....+|.++=.
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~-G~~~Vi~~~~~~~~~~~~~~~Ga~~--~i~~~~~~~~~~i~~~~~~~g~d~vid~ 252 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALA-GASKIIAVDIDDRKLEWAREFGATH--TVNSSGTDPVEAIRALTGGFGADVVIDA 252 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHcCCce--EEcCCCcCHHHHHHHHhCCCCCCEEEEC
Confidence 356777778754 55667778776 45 5999998777677776666532 2211111111111110 12347766532
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
... +..++...+.|++||++.+.
T Consensus 253 ~g~--------------~~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 253 VGR--------------PETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred CCC--------------HHHHHHHHHHhccCCEEEEE
Confidence 111 24566777899999998864
No 318
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=78.60 E-value=7 Score=34.90 Aligned_cols=105 Identities=15% Similarity=0.187 Sum_probs=64.8
Q ss_pred CCCeEEEEeccccHHHHHHHhh----CCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchh--hhhhccCCCcEeEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARK----RKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTF--RSIVASYPGKLILV 198 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~----~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll--~~~~~~~~~s~D~V 198 (311)
...+|+|+|.-.|..++..|.. .....|+|+|++-+.+..+... .+.|.|++++-.+.- .+. ....+....|
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-~p~i~f~egss~dpai~eqi-~~~~~~y~kI 146 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-VPDILFIEGSSTDPAIAEQI-RRLKNEYPKI 146 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-CCCeEEEeCCCCCHHHHHHH-HHHhcCCCcE
Confidence 4578999999999999888764 2247899999876554443322 578999999987642 100 0011222233
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
++. -|. -|+.... -.-++.+.++|.-|-++++.
T Consensus 147 fvi-lDs----dHs~~hv--LAel~~~~pllsaG~Y~vVe 179 (237)
T COG3510 147 FVI-LDS----DHSMEHV--LAELKLLAPLLSAGDYLVVE 179 (237)
T ss_pred EEE-ecC----CchHHHH--HHHHHHhhhHhhcCceEEEe
Confidence 332 122 1222111 25567778889999888874
No 319
>PRK13699 putative methylase; Provisional
Probab=78.36 E-value=4.7 Score=36.46 Aligned_cols=38 Identities=18% Similarity=0.439 Sum_probs=30.8
Q ss_pred hcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHH
Q 021567 120 AYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH 160 (311)
Q Consensus 120 ~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~ 160 (311)
.+.+ ++.+|||-=||+|..+.+..+. +.+++|+|+++.
T Consensus 159 ~~s~-~g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~ 196 (227)
T PRK13699 159 SFTH-PNAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQ 196 (227)
T ss_pred HhCC-CCCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHH
Confidence 3444 5789999999999999888776 678999998643
No 320
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=78.26 E-value=4.5 Score=39.66 Aligned_cols=64 Identities=8% Similarity=0.011 Sum_probs=47.7
Q ss_pred HcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 167 LSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 167 ~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+.++++|+++++++.+.+.. .+++++|.+++.=.--|+... .-.+.++++.+.++|||++++.+
T Consensus 271 r~~~drv~i~t~si~~~L~~---~~~~s~~~~vL~D~~Dwm~~~------~~~~~~~~l~~~~~pgaRV~~Rs 334 (380)
T PF11899_consen 271 RARLDRVRIHTDSIEEVLRR---LPPGSFDRFVLSDHMDWMDPE------QLNEEWQELARTARPGARVLWRS 334 (380)
T ss_pred hcCCCeEEEEeccHHHHHHh---CCCCCeeEEEecchhhhCCHH------HHHHHHHHHHHHhCCCCEEEEee
Confidence 45668999999999998764 258999998766222243321 22578899999999999999976
No 321
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=78.13 E-value=14 Score=34.44 Aligned_cols=95 Identities=16% Similarity=0.087 Sum_probs=54.7
Q ss_pred CCeEEEEecc-ccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccch---hhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATST---FRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcG-tG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~l---l~~~~~~~~~s~D~V~i~ 201 (311)
+..||-.|+| .|..++.+|+......+++++......+.+++.+.+ .++..+-.++ +.... ....+|.++-.
T Consensus 168 ~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~--~vi~~~~~~~~~~i~~~~--~~~~~d~vld~ 243 (347)
T cd05278 168 GSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGAT--DIINPKNGDIVEQILELT--GGRGVDCVIEA 243 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCc--EEEcCCcchHHHHHHHHc--CCCCCcEEEEc
Confidence 4566667876 477888888876424788887665555555544432 2222211111 11111 23567877532
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
... ...+.+..+.|+++|++...
T Consensus 244 -~g~-------------~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 244 -VGF-------------EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred -cCC-------------HHHHHHHHHHhhcCCEEEEE
Confidence 111 15678888999999988753
No 322
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=77.25 E-value=3.8 Score=40.10 Aligned_cols=32 Identities=25% Similarity=0.271 Sum_probs=28.5
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchH
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV 158 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~ 158 (311)
-+.++|+|.|.|.++.-|+-.+ +..|.|||-+
T Consensus 154 i~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegs 185 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGS 185 (476)
T ss_pred CCeeEEcCCCchHHHHHHhhcc-CceEEEeccc
Confidence 5789999999999999999877 6899999954
No 323
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=77.20 E-value=25 Score=34.43 Aligned_cols=70 Identities=10% Similarity=-0.027 Sum_probs=45.4
Q ss_pred ccccHHHHHHHhhC--CCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCC
Q 021567 134 SGNGLFLLGMARKR--KDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP 205 (311)
Q Consensus 134 cGtG~~~~~lA~~~--p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP 205 (311)
||.|.++..+++.. .+..++.+|..+...+.+.+.+ .++.++.+|+.+. ..+....-...|.|++..++.
T Consensus 237 iG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~-~~~~~i~gd~~~~-~~L~~~~~~~a~~vi~~~~~~ 308 (453)
T PRK09496 237 VGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL-PNTLVLHGDGTDQ-ELLEEEGIDEADAFIALTNDD 308 (453)
T ss_pred ECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC-CCCeEEECCCCCH-HHHHhcCCccCCEEEECCCCc
Confidence 55588888887763 3568999998877766665443 4577899999764 222111234667777665543
No 324
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=76.82 E-value=19 Score=34.35 Aligned_cols=96 Identities=14% Similarity=0.086 Sum_probs=54.7
Q ss_pred CCeEEEEeccc-cHHHHHHHhhCCCC-eEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 126 QPLVVDIGSGN-GLFLLGMARKRKDL-NFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 126 ~~~vLDIGcGt-G~~~~~lA~~~p~~-~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
+..||=+|+|. |..+.++|+.. +. +++++|.++.-++.+++.|.+. ++..+-.+..+......++.+|.++-.-.
T Consensus 192 g~~VlV~G~G~vG~~a~~lak~~-G~~~Vi~~~~~~~r~~~a~~~Ga~~--~i~~~~~~~~~~i~~~~~~g~d~vid~~G 268 (371)
T cd08281 192 GQSVAVVGLGGVGLSALLGAVAA-GASQVVAVDLNEDKLALARELGATA--TVNAGDPNAVEQVRELTGGGVDYAFEMAG 268 (371)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCCcEEEEcCCHHHHHHHHHcCCce--EeCCCchhHHHHHHHHhCCCCCEEEECCC
Confidence 44555578753 55566677765 45 6999998777677776666532 22222122111111111235777653311
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
. ...++...+.|+++|.+++.
T Consensus 269 ~--------------~~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 269 S--------------VPALETAYEITRRGGTTVTA 289 (371)
T ss_pred C--------------hHHHHHHHHHHhcCCEEEEE
Confidence 1 25677778899999998864
No 325
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=76.82 E-value=23 Score=36.93 Aligned_cols=99 Identities=13% Similarity=0.063 Sum_probs=59.6
Q ss_pred CeEEEEeccccHHHHHHHhh--CCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 127 PLVVDIGSGNGLFLLGMARK--RKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 127 ~~vLDIGcGtG~~~~~lA~~--~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
..|+=+||| .++..+++. ..+..++.+|.++...+.+++.| ...+.+|+.+. +-+-...-...|.+.+...|
T Consensus 401 ~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g---~~v~~GDat~~-~~L~~agi~~A~~vvv~~~d 474 (621)
T PRK03562 401 PRVIIAGFG--RFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFG---MKVFYGDATRM-DLLESAGAAKAEVLINAIDD 474 (621)
T ss_pred CcEEEEecC--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcC---CeEEEEeCCCH-HHHHhcCCCcCCEEEEEeCC
Confidence 445555555 555555543 23568999999887777776554 56889999885 21111122456777777666
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcH
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE 242 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~ 242 (311)
+. . ...+-...|.+.|+-.++..+.+.
T Consensus 475 ~~----------~-n~~i~~~ar~~~p~~~iiaRa~d~ 501 (621)
T PRK03562 475 PQ----------T-SLQLVELVKEHFPHLQIIARARDV 501 (621)
T ss_pred HH----------H-HHHHHHHHHHhCCCCeEEEEECCH
Confidence 52 1 133344556667887777766554
No 326
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=76.61 E-value=2.6 Score=38.48 Aligned_cols=33 Identities=24% Similarity=0.389 Sum_probs=25.0
Q ss_pred CeEEEEeccccHHHHHHHhhC----C----CCeEEEEchHH
Q 021567 127 PLVVDIGSGNGLFLLGMARKR----K----DLNFLGLELVT 159 (311)
Q Consensus 127 ~~vLDIGcGtG~~~~~lA~~~----p----~~~vvGiDi~~ 159 (311)
..|+|+|.|+|.++..+.+.. | ..+++-||.|+
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp 60 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISP 60 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTC
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCH
Confidence 689999999999998887642 2 35899999874
No 327
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=76.05 E-value=16 Score=34.59 Aligned_cols=46 Identities=17% Similarity=0.317 Sum_probs=33.8
Q ss_pred CCCeEEEEeccc-cHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCC
Q 021567 125 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGIT 171 (311)
Q Consensus 125 ~~~~vLDIGcGt-G~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~ 171 (311)
.+..||=+|||. |..+..+|+.. +.+++++|.++.-++.+++.|.+
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~-G~~vi~~~~~~~~~~~~~~~Ga~ 212 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMMKGFGAD 212 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHhCCc
Confidence 467888899866 77777788876 56899999877666666666653
No 328
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=75.46 E-value=18 Score=33.78 Aligned_cols=97 Identities=19% Similarity=0.242 Sum_probs=56.6
Q ss_pred CCCeEEEEeccc-cHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEE-EEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 125 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGY-FIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 125 ~~~~vLDIGcGt-G~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~-f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
.+..+|-.|+|. |..++++|+.. +.+++++.-++.-.+.+++.+.+.+- ....+....+.... ....+|.++-..
T Consensus 159 ~g~~vLI~g~g~vG~~a~~lA~~~-g~~v~~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~--~~~~vd~vld~~ 235 (337)
T cd08261 159 AGDTVLVVGAGPIGLGVIQVAKAR-GARVIVVDIDDERLEFARELGADDTINVGDEDVAARLRELT--DGEGADVVIDAT 235 (337)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCeEEEECCCHHHHHHHHHhCCCEEecCcccCHHHHHHHHh--CCCCCCEEEECC
Confidence 356788888874 77888888875 67888887655544455444433221 11112111112111 234577775432
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
-. ...+.++.+.|+++|.++..
T Consensus 236 g~--------------~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 236 GN--------------PASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred CC--------------HHHHHHHHHHHhcCCEEEEE
Confidence 11 25678888999999998754
No 329
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=73.79 E-value=19 Score=33.58 Aligned_cols=94 Identities=14% Similarity=0.157 Sum_probs=55.7
Q ss_pred CCeEEEEeccc-cHHHHHHHhhCCCC-eEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 126 QPLVVDIGSGN-GLFLLGMARKRKDL-NFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 126 ~~~vLDIGcGt-G~~~~~lA~~~p~~-~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
+..||-.|||. |..+..+|+.. +. .+++++-++...+.+++.+.+. ++..+-..+ ....+ ....+|.++-...
T Consensus 166 ~~~VLI~g~g~vG~~~~~lak~~-G~~~v~~~~~s~~~~~~~~~~g~~~--vi~~~~~~~-~~~~~-~~~~vd~vld~~g 240 (339)
T cd08232 166 GKRVLVTGAGPIGALVVAAARRA-GAAEIVATDLADAPLAVARAMGADE--TVNLARDPL-AAYAA-DKGDFDVVFEASG 240 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHcCCCE--EEcCCchhh-hhhhc-cCCCccEEEECCC
Confidence 56677788876 77888888875 44 7899987666555555555432 222211111 11111 1234777754321
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
. ...++.+.+.|+++|+++..
T Consensus 241 ~--------------~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 241 A--------------PAALASALRVVRPGGTVVQV 261 (339)
T ss_pred C--------------HHHHHHHHHHHhcCCEEEEE
Confidence 1 24577888999999998864
No 330
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=73.75 E-value=9.7 Score=34.98 Aligned_cols=121 Identities=19% Similarity=0.199 Sum_probs=71.9
Q ss_pred CCeEEEEeccccHHHHHHHhh-C---C-----CCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchh--hhhhcc-CCC
Q 021567 126 QPLVVDIGSGNGLFLLGMARK-R---K-----DLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTF--RSIVAS-YPG 193 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~-~---p-----~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll--~~~~~~-~~~ 193 (311)
-.+++|++...|.++..|+++ + | +..+++||+-.. ..++.|.-+++|+...- ..++.. ...
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-------aPI~GV~qlq~DIT~~stae~Ii~hfgge 114 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-------APIEGVIQLQGDITSASTAEAIIEHFGGE 114 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-------CccCceEEeecccCCHhHHHHHHHHhCCC
Confidence 467999999999999999886 2 2 123999997332 23567888888887641 111111 234
Q ss_pred cEeEEEEeCCCCCCCCchhhhhhhHH----HHHHHHHhcccCCeEEEEE---e-CcHHHHHHHHHHHHh
Q 021567 194 KLILVSIQCPNPDFNRPEHRWRMVQR----SLVEAVSDLLVHDGKVFLQ---S-DIEEVMLRMKQQFLE 254 (311)
Q Consensus 194 s~D~V~i~fpdP~~k~~h~krRl~~~----~~l~~i~rvLkpGG~l~~~---t-D~~~~~~~~~~~l~~ 254 (311)
.-|+|+.. --|....-|.--.-++. ..|.-...+|||||.|+-+ . |..-+...+...|..
T Consensus 115 kAdlVvcD-GAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~tslLysql~~ff~k 182 (294)
T KOG1099|consen 115 KADLVVCD-GAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRDTSLLYSQLRKFFKK 182 (294)
T ss_pred CccEEEeC-CCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCchHHHHHHHHHHhhc
Confidence 66777654 22333344443333442 3455668999999999853 2 222334445544443
No 331
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=73.22 E-value=35 Score=32.50 Aligned_cols=126 Identities=16% Similarity=0.136 Sum_probs=79.2
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCC
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP 205 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP 205 (311)
..+++|+-||-|.+.+.+.... -.-+.++|+.+.|.+.-+.+- +.-.+...|+..+....++ ...+|.++-.+|-.
T Consensus 3 ~~~~idLFsG~GG~~lGf~~ag-f~~~~a~Eid~~a~~ty~~n~-~~~~~~~~di~~~~~~~~~--~~~~DvligGpPCQ 78 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAG-FEIVFANEIDPPAVATYKANF-PHGDIILGDIKELDGEALR--KSDVDVLIGGPPCQ 78 (328)
T ss_pred CceEEeeccCCchHHHHHHhcC-CeEEEEEecCHHHHHHHHHhC-CCCceeechHhhcChhhcc--ccCCCEEEeCCCCc
Confidence 4679999999999999888774 246889999988887765442 2356777888776433221 12789999888866
Q ss_pred CCCCchhhh-------hhhHHHHHHHHHhcccCCeEEEEE------eCcHHHHHHHHHHHHhcCCC
Q 021567 206 DFNRPEHRW-------RMVQRSLVEAVSDLLVHDGKVFLQ------SDIEEVMLRMKQQFLEYGKG 258 (311)
Q Consensus 206 ~~k~~h~kr-------Rl~~~~~l~~i~rvLkpGG~l~~~------tD~~~~~~~~~~~l~~~g~~ 258 (311)
-+...-.++ .++ -++ .++...++| -.|++. +......+...+.|++.|+.
T Consensus 79 ~FS~aG~r~~~~D~R~~L~-~~~-~r~I~~~~P-~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~ 141 (328)
T COG0270 79 DFSIAGKRRGYDDPRGSLF-LEF-IRLIEQLRP-KFFVLENVKGLLSSKGQTFDEIKKELEELGYG 141 (328)
T ss_pred chhhcCcccCCcCccceee-HHH-HHHHHhhCC-CEEEEecCchHHhcCchHHHHHHHHHHHcCCc
Confidence 554321111 111 122 334455677 444442 11223566778888999985
No 332
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=72.78 E-value=23 Score=32.34 Aligned_cols=96 Identities=15% Similarity=0.024 Sum_probs=54.1
Q ss_pred CCeEEEEecc-ccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 126 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 126 ~~~vLDIGcG-tG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
+..||=+|+| .|..+..+|+..--.+++++|.++.-++.+++.|.+.+-- ..+....+.... ....+|.++-....
T Consensus 121 g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~-~~~~~~~~~~~~--~~~g~d~vid~~G~ 197 (280)
T TIGR03366 121 GRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAE-PEVLAERQGGLQ--NGRGVDVALEFSGA 197 (280)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecC-chhhHHHHHHHh--CCCCCCEEEECCCC
Confidence 4567777774 3445566677653234899998776667776666532111 111111111111 12347776533211
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
+..++...+.|+|+|++.+.
T Consensus 198 --------------~~~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 198 --------------TAAVRACLESLDVGGTAVLA 217 (280)
T ss_pred --------------hHHHHHHHHHhcCCCEEEEe
Confidence 25677788999999999864
No 333
>COG0126 Pgk 3-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=72.35 E-value=8.7 Score=37.64 Aligned_cols=97 Identities=26% Similarity=0.507 Sum_probs=63.8
Q ss_pred eeeccCCc-----hhhHhhhhceeEEEccccccccccccchhHHHHHHHhhhhcCceeEEEcchhhHHHHH-hhccchhh
Q 021567 9 LSILGQGP-----WKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIA-KVSSSIFG 82 (311)
Q Consensus 9 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~s~~~ 82 (311)
..++--|| +++.|..+|.|+|=||.-.-=-+++.-|...++..++.. ....++...|.++++... ++++. ..
T Consensus 289 ~~~lDIGp~Ti~~~~~~i~~AktivwNGP~GVfE~~~Fa~GT~~v~~aia~~-~~a~SiiGGGdt~aAi~~~G~~d~-~s 366 (395)
T COG0126 289 LMILDIGPKTIELFAEIIKGAKTIVWNGPMGVFEFENFAKGTEEVAKAIAKS-SGAFSIIGGGDTAAAIDKLGLADK-IS 366 (395)
T ss_pred ccccccCHHHHHHHHHHHhhCCEEEEeCCccceecchhhhhHHHHHHHHHhc-CCCeEEECCcHHHHHHHHcCcccc-Cc
Confidence 44555666 568899999999999986433467888888888877776 556788888888776643 33111 11
Q ss_pred hhhhhhhhhhhhhhhhccCCCchhhh
Q 021567 83 LNMVESGSAVWEFLKGRMLPGVSALD 108 (311)
Q Consensus 83 ~~~fe~~a~~wd~~~~r~~~~~~~l~ 108 (311)
| .-.+....-+++-|...|+.+.+.
T Consensus 367 h-ISTGGGAsLe~leGk~LPgv~aL~ 391 (395)
T COG0126 367 H-ISTGGGASLEFLEGKELPGVEALE 391 (395)
T ss_pred e-EecCchHHHHHhcCCCcchHHHHh
Confidence 1 112345556677777777765444
No 334
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=72.26 E-value=32 Score=31.78 Aligned_cols=96 Identities=15% Similarity=0.082 Sum_probs=55.9
Q ss_pred CCCeEEEEecc-ccHHHHHHHhhCCCCe-EEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 125 AQPLVVDIGSG-NGLFLLGMARKRKDLN-FLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 125 ~~~~vLDIGcG-tG~~~~~lA~~~p~~~-vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
.+..+|-+|+| .|..++.+|+.. +.+ ++.++-+......+++.+.+ .++..+-....... ......+|.++-..
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~-~~~~~~vd~v~~~~ 234 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKLN-GASRVTVAEPNEEKLELAKKLGAT--ETVDPSREDPEAQK-EDNPYGFDVVIEAT 234 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhCCe--EEecCCCCCHHHHH-HhcCCCCcEEEECC
Confidence 35678888876 377778888875 344 78888766555555555543 22222211111100 11234578775331
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.. ...+.+..+.|+++|.++..
T Consensus 235 ~~--------------~~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 235 GV--------------PKTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred CC--------------hHHHHHHHHHHhcCCEEEEE
Confidence 11 25677888999999998753
No 335
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=72.05 E-value=26 Score=33.77 Aligned_cols=98 Identities=15% Similarity=0.130 Sum_probs=63.5
Q ss_pred CCCeEEEEeccc-cHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccc--cch---hhhhhccCCCcEeEE
Q 021567 125 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNA--TST---FRSIVASYPGKLILV 198 (311)
Q Consensus 125 ~~~~vLDIGcGt-G~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da--~~l---l~~~~~~~~~s~D~V 198 (311)
.+.++|=+|+|+ |-.+...|+..-...++.+|+++..++.|++.|.+.+....... ..+ ....+ .+..+|..
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~--g~~~~d~~ 246 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKAL--GKKQPDVT 246 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhc--cccCCCeE
Confidence 478999999996 66666667778778999999999999999888876555444322 221 11111 12234443
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
+.+.-- +.-++.....+++||.+.+.
T Consensus 247 -~dCsG~-------------~~~~~aai~a~r~gGt~vlv 272 (354)
T KOG0024|consen 247 -FDCSGA-------------EVTIRAAIKATRSGGTVVLV 272 (354)
T ss_pred -EEccCc-------------hHHHHHHHHHhccCCEEEEe
Confidence 333211 24455667789999997764
No 336
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=71.73 E-value=41 Score=32.96 Aligned_cols=106 Identities=17% Similarity=0.284 Sum_probs=67.3
Q ss_pred eEEEEeccccHHHHHHHhhCCCCeEEEEc--hHHHH-HHHHHHcCCC--cEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 128 LVVDIGSGNGLFLLGMARKRKDLNFLGLE--LVTHC-RDSLQLSGIT--NGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 128 ~vLDIGcGtG~~~~~lA~~~p~~~vvGiD--i~~~a-~~~a~~~~~~--Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
.||=|+-.-|.++..++...|. .--| ++..+ .++++.++++ +++++.... - .++.+|.|.+..
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~---~~~ds~~~~~~~~~n~~~n~~~~~~~~~~~~~~--~-------~~~~~d~vl~~~ 114 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPY---SIGDSYISELATRENLRLNGIDESSVKFLDSTA--D-------YPQQPGVVLIKV 114 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCC---eeehHHHHHHHHHHHHHHcCCCcccceeecccc--c-------ccCCCCEEEEEe
Confidence 6899999999999999976552 1256 34443 4566667664 355543221 1 245589998884
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHh
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLE 254 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~ 254 (311)
| |.+. + -...+..+.++|.||+.++...........+.+.+++
T Consensus 115 P----K~~~----~-l~~~l~~l~~~l~~~~~ii~g~~~k~i~~~~~~~~~k 157 (378)
T PRK15001 115 P----KTLA----L-LEQQLRALRKVVTSDTRIIAGAKARDIHTSTLELFEK 157 (378)
T ss_pred C----CCHH----H-HHHHHHHHHhhCCCCCEEEEEEecCCCcHHHHHHHHH
Confidence 4 4331 1 1467888999999999988765554443344444433
No 337
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=71.15 E-value=37 Score=31.46 Aligned_cols=95 Identities=12% Similarity=0.066 Sum_probs=58.3
Q ss_pred CCCeEEEEe--ccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEc--cccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIG--SGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIAT--NATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIG--cGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~--Da~~ll~~~~~~~~~s~D~V~i 200 (311)
.+..||=.| -|.|..++++|+.. +.++++++.++.-.+.+++.|.+.+--... +....... . ..+.+|.++-
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~-G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~-~--~~~gvdvv~d 213 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKK-A--SPDGYDCYFD 213 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHH-h--CCCCeEEEEE
Confidence 356777677 46888889999875 568999887766666776666643211111 12222111 1 1345787753
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
... ...++...++|+++|+++..
T Consensus 214 ~~G---------------~~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 214 NVG---------------GEFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred CCC---------------HHHHHHHHHHhCcCcEEEEe
Confidence 211 13457788999999999864
No 338
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=70.95 E-value=41 Score=31.57 Aligned_cols=96 Identities=14% Similarity=0.140 Sum_probs=53.8
Q ss_pred CCeEEEEeccc-cHHHHHHHhhCCCC-eEEEEchHHHHHHHHHHcCCCcEE-EEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 126 QPLVVDIGSGN-GLFLLGMARKRKDL-NFLGLELVTHCRDSLQLSGITNGY-FIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 126 ~~~vLDIGcGt-G~~~~~lA~~~p~~-~vvGiDi~~~a~~~a~~~~~~Nv~-f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
+..||=.|||+ |..+.++|+.. +. .+++++.++..++.+++.|.+.+- ....+...+ .... ....+|.+++.+
T Consensus 161 g~~vlV~G~g~vG~~~~~~a~~~-G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~-~~~~--~~~~~d~~v~d~ 236 (347)
T PRK10309 161 GKNVIIIGAGTIGLLAIQCAVAL-GAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQI-QSVL--RELRFDQLILET 236 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHHcCCceEecCcccCHHHH-HHHh--cCCCCCeEEEEC
Confidence 45666668753 44556667765 45 478998877666666655543211 111111111 1111 223466444443
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.-- ...+.+..+.|++||.+.+.
T Consensus 237 ~G~-------------~~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 237 AGV-------------PQTVELAIEIAGPRAQLALV 259 (347)
T ss_pred CCC-------------HHHHHHHHHHhhcCCEEEEE
Confidence 211 25678888999999999875
No 339
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=70.87 E-value=7.3 Score=31.41 Aligned_cols=26 Identities=15% Similarity=0.287 Sum_probs=20.6
Q ss_pred HHHHHHHHhcccCCeEEEEEe-CcHHH
Q 021567 219 RSLVEAVSDLLVHDGKVFLQS-DIEEV 244 (311)
Q Consensus 219 ~~~l~~i~rvLkpGG~l~~~t-D~~~~ 244 (311)
..|++.+++.|+|||.|++.- .+..|
T Consensus 24 ~~~f~~~~~~L~pGG~lilEpQ~w~sY 50 (110)
T PF06859_consen 24 KRFFRRIYSLLRPGGILILEPQPWKSY 50 (110)
T ss_dssp HHHHHHHHHHEEEEEEEEEE---HHHH
T ss_pred HHHHHHHHHhhCCCCEEEEeCCCcHHH
Confidence 579999999999999999973 34444
No 340
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=70.67 E-value=5.4 Score=36.18 Aligned_cols=37 Identities=11% Similarity=0.107 Sum_probs=26.4
Q ss_pred CCeEEEEeccccHHHHHHHhhCCC--CeEEEEchHHHHH
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKD--LNFLGLELVTHCR 162 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~--~~vvGiDi~~~a~ 162 (311)
.-.+.|=+||.|.++.-+.--+++ .+++|-|+.+.++
T Consensus 52 p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL 90 (246)
T PF11599_consen 52 PYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDAL 90 (246)
T ss_dssp -EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHH
T ss_pred CeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHH
Confidence 357999999999999888766554 3799999754433
No 341
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.64 E-value=6.2 Score=33.81 Aligned_cols=58 Identities=26% Similarity=0.279 Sum_probs=40.9
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchH----HHHHHHHHHcCC-CcEEEEEccccch
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV----THCRDSLQLSGI-TNGYFIATNATST 183 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~----~~a~~~a~~~~~-~Nv~f~~~Da~~l 183 (311)
+....+|||+|.|.+.++.|+.. -..-+|+|+. ..+.-.+-+.|. +..+|.+-|+-..
T Consensus 72 ~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~ 134 (199)
T KOG4058|consen 72 PKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKV 134 (199)
T ss_pred CCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhc
Confidence 35789999999999999999874 3567999963 333333334554 4578888776554
No 342
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=70.08 E-value=27 Score=35.63 Aligned_cols=104 Identities=13% Similarity=0.121 Sum_probs=62.1
Q ss_pred CCCeEEEEeccc-cHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEcc--------ccchh-------hhhh
Q 021567 125 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATN--------ATSTF-------RSIV 188 (311)
Q Consensus 125 ~~~~vLDIGcGt-G~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~D--------a~~ll-------~~~~ 188 (311)
.+.+|+=+|||. |..++..|+.. ++.++++|.....++.+++.|.+.+.+-..+ +..+. ...+
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~ 242 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALF 242 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHH
Confidence 467899999997 55566777765 4689999999888888887765422221111 00110 0111
Q ss_pred ccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHH-HHHHHhcccCCeEEEEE
Q 021567 189 ASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSL-VEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 189 ~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~-l~~i~rvLkpGG~l~~~ 238 (311)
...-..+|.++---..|. ++. +.+ .++..+.+||||++...
T Consensus 243 ~~~~~gaDVVIetag~pg--~~a-------P~lit~~~v~~mkpGgvIVdv 284 (509)
T PRK09424 243 AEQAKEVDIIITTALIPG--KPA-------PKLITAEMVASMKPGSVIVDL 284 (509)
T ss_pred HhccCCCCEEEECCCCCc--ccC-------cchHHHHHHHhcCCCCEEEEE
Confidence 100135788764433322 111 234 48899999999998864
No 343
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=69.70 E-value=62 Score=30.23 Aligned_cols=110 Identities=10% Similarity=0.092 Sum_probs=63.4
Q ss_pred CCeEEEEeccccHHHHHHHhhCCC----CeEEEEchHHHHHHH---HHHcCCC--cEEEEEccccchhhhhhccCCCcEe
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKD----LNFLGLELVTHCRDS---LQLSGIT--NGYFIATNATSTFRSIVASYPGKLI 196 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~----~~vvGiDi~~~a~~~---a~~~~~~--Nv~f~~~Da~~ll~~~~~~~~~s~D 196 (311)
.-..+|+|+|+-.=+..|...+.. ..++.||+++..++. +-....+ .+.-+++|.+..+.. +| .+. .
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~-~~--~~~-~ 154 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAE-LP--RGG-R 154 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhc-cc--CCC-e
Confidence 467999999999877777554333 789999986432221 1111222 355677777665432 11 222 2
Q ss_pred EEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHH
Q 021567 197 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE 243 (311)
Q Consensus 197 ~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~ 243 (311)
.+++. +-.-.-+..+. -...||.++...|.||-.|.+-+|...
T Consensus 155 Rl~~f-lGStlGN~tp~---e~~~Fl~~l~~a~~pGd~~LlGvDl~k 197 (321)
T COG4301 155 RLFVF-LGSTLGNLTPG---ECAVFLTQLRGALRPGDYFLLGVDLRK 197 (321)
T ss_pred EEEEE-ecccccCCChH---HHHHHHHHHHhcCCCcceEEEeccccC
Confidence 23221 11000000011 115899999999999999999887643
No 344
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=69.62 E-value=36 Score=31.68 Aligned_cols=95 Identities=18% Similarity=0.168 Sum_probs=55.4
Q ss_pred CCeEEEEeccc-cHHHHHHHhhCCCCe-EEEEchHHHHHHHHHHcCCCcEEEEEc-cccchhhhhhccCCCcEeEEEEeC
Q 021567 126 QPLVVDIGSGN-GLFLLGMARKRKDLN-FLGLELVTHCRDSLQLSGITNGYFIAT-NATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 126 ~~~vLDIGcGt-G~~~~~lA~~~p~~~-vvGiDi~~~a~~~a~~~~~~Nv~f~~~-Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
+..||-.|+|. |..+..+|+.. +.. +++++-+....+.+...+..++--... ....+ .... ....+|.++-.
T Consensus 160 ~~~vlI~g~g~~g~~~~~lA~~~-G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-~~~~--~~~~~d~vld~- 234 (343)
T cd08236 160 GDTVVVIGAGTIGLLAIQWLKIL-GAKRVIAVDIDDEKLAVARELGADDTINPKEEDVEKV-RELT--EGRGADLVIEA- 234 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHcCCCEEecCccccHHHH-HHHh--CCCCCCEEEEC-
Confidence 45677778876 77888888875 454 888886655555555555432111111 11111 1111 22347877533
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
..+ ...+..+.+.|+++|.+...
T Consensus 235 ~g~-------------~~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 235 AGS-------------PATIEQALALARPGGKVVLV 257 (343)
T ss_pred CCC-------------HHHHHHHHHHhhcCCEEEEE
Confidence 211 25677888999999998764
No 345
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=69.42 E-value=39 Score=32.11 Aligned_cols=95 Identities=11% Similarity=0.121 Sum_probs=57.5
Q ss_pred CCCeEEEEec--cccHHHHHHHhhCCCCeEEEEchHHHHHHHHH-HcCCCcEEEEE-c-cccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGS--GNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ-LSGITNGYFIA-T-NATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGc--GtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~-~~~~~Nv~f~~-~-Da~~ll~~~~~~~~~s~D~V~ 199 (311)
.+..||=.|+ |.|.+++++|+.. +.++++++.+..-.+.++ +.|.+.+--.. . +..+.+... ..+.+|.++
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~-G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~---~~~gvD~v~ 233 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLH-GCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRY---FPEGIDIYF 233 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHH---CCCCcEEEE
Confidence 3567877887 5888899999875 578999987665555554 45654321111 1 222211211 123578775
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
=. .- ...+....+.|++||++.+.
T Consensus 234 d~-vG--------------~~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 234 DN-VG--------------GDMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred EC-CC--------------HHHHHHHHHHhccCCEEEEE
Confidence 32 11 24567788899999998864
No 346
>PRK10537 voltage-gated potassium channel; Provisional
Probab=69.14 E-value=36 Score=33.50 Aligned_cols=104 Identities=6% Similarity=0.025 Sum_probs=60.4
Q ss_pred ccccHHHHHHHhh--CCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCch
Q 021567 134 SGNGLFLLGMARK--RKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPE 211 (311)
Q Consensus 134 cGtG~~~~~lA~~--~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h 211 (311)
||.|..+..+++. ..+..++.+|-.+. +. ...++..++.+|+.+. +.+-...-...+.+.+..+|..
T Consensus 246 ~G~g~lg~~v~~~L~~~g~~vvVId~d~~--~~---~~~~g~~vI~GD~td~-e~L~~AgI~~A~aVI~~t~dD~----- 314 (393)
T PRK10537 246 CGHSPLAINTYLGLRQRGQAVTVIVPLGL--EH---RLPDDADLIPGDSSDS-AVLKKAGAARARAILALRDNDA----- 314 (393)
T ss_pred ECCChHHHHHHHHHHHCCCCEEEEECchh--hh---hccCCCcEEEeCCCCH-HHHHhcCcccCCEEEEcCCChH-----
Confidence 6677777777664 22457888885421 11 1123567899999874 2211111234566666544431
Q ss_pred hhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCC
Q 021567 212 HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG 258 (311)
Q Consensus 212 ~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~ 258 (311)
...++-...|.+.|+..++..+++++.. +.+++.|..
T Consensus 315 ------~Nl~ivL~ar~l~p~~kIIa~v~~~~~~----~~L~~~GaD 351 (393)
T PRK10537 315 ------DNAFVVLAAKEMSSDVKTVAAVNDSKNL----EKIKRVHPD 351 (393)
T ss_pred ------HHHHHHHHHHHhCCCCcEEEEECCHHHH----HHHHhcCCC
Confidence 1244556678889999999888776543 344555554
No 347
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=69.14 E-value=17 Score=34.63 Aligned_cols=109 Identities=16% Similarity=0.131 Sum_probs=66.2
Q ss_pred CCeEEEEeccccHHHHHHHhhC--------------------CCCeEEEEchHH--HHHHHH----HH------------
Q 021567 126 QPLVVDIGSGNGLFLLGMARKR--------------------KDLNFLGLELVT--HCRDSL----QL------------ 167 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~--------------------p~~~vvGiDi~~--~a~~~a----~~------------ 167 (311)
..+||-||-|.|.=+.++|..+ +..+++.||+.. ..++++ ..
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 4689999999988888887654 125899999621 111111 10
Q ss_pred -----cCCCcEEEEEccccchhhhhh-cc-CCCcEeEEEEeCCCC-CCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 168 -----SGITNGYFIATNATSTFRSIV-AS-YPGKLILVSIQCPNP-DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 168 -----~~~~Nv~f~~~Da~~ll~~~~-~~-~~~s~D~V~i~fpdP-~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.+.=|+.|.+.|+..+..+-+ .. .+.+.++|++.|--. .+... +--.-+||..+...++||-.+.+.
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s----~~kTt~FLl~Lt~~~~~GslLLVv 241 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTS----ISKTTKFLLRLTDICPPGSLLLVV 241 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcC----hHHHHHHHHHHHhhcCCCcEEEEE
Confidence 111268999999998743211 00 123567777665311 01000 111258999999999999998884
No 348
>PLN02827 Alcohol dehydrogenase-like
Probab=68.96 E-value=33 Score=33.00 Aligned_cols=97 Identities=13% Similarity=0.098 Sum_probs=53.7
Q ss_pred CCCeEEEEeccc-cHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEc---cccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIAT---NATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGt-G~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~---Da~~ll~~~~~~~~~s~D~V~i 200 (311)
.+..||=.|+|. |..++++|+..--..++++|.++.-.+.+++.|.+.+--... +....+.... .+.+|.++=
T Consensus 193 ~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~---~~g~d~vid 269 (378)
T PLN02827 193 KGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMT---GGGADYSFE 269 (378)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHh---CCCCCEEEE
Confidence 356777778643 444566676653236899997776666776666532211111 1112112111 225776643
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCC-eEEEEE
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD-GKVFLQ 238 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpG-G~l~~~ 238 (311)
. .-. +..+....+.|++| |++++.
T Consensus 270 ~-~G~-------------~~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 270 C-VGD-------------TGIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred C-CCC-------------hHHHHHHHHhhccCCCEEEEE
Confidence 2 211 24567778889998 998763
No 349
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=68.44 E-value=38 Score=31.30 Aligned_cols=94 Identities=16% Similarity=0.174 Sum_probs=56.7
Q ss_pred CCCeEEEEecc-ccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 125 AQPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 125 ~~~~vLDIGcG-tG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
.+..+|-+||| .|..+..+|+.. +.++++++-+....+.+++.+.+.+ +..+-...... ....+|.++-...
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~----~~~~~d~vi~~~~ 234 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARAM-GFETVAITRSPDKRELARKLGADEV--VDSGAELDEQA----AAGGADVILVTVV 234 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHhCCcEE--eccCCcchHHh----ccCCCCEEEECCC
Confidence 35677778987 777778888775 5688888877666666655553222 11111111111 1235777654322
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
. ...+..+.+.|+++|.++...
T Consensus 235 ~--------------~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 235 S--------------GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred c--------------HHHHHHHHHhcccCCEEEEEC
Confidence 2 245777889999999988653
No 350
>PRK10206 putative oxidoreductase; Provisional
Probab=68.03 E-value=27 Score=33.38 Aligned_cols=69 Identities=9% Similarity=0.047 Sum_probs=37.5
Q ss_pred eEEEEeccc-cH--HHHHHHhhCCCCeEEE-EchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 128 LVVDIGSGN-GL--FLLGMARKRKDLNFLG-LELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 128 ~vLDIGcGt-G~--~~~~lA~~~p~~~vvG-iDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
++-=||||. +. +...+....++..+++ .|....+.+.+++.+ .+. ...|..++ + .+..+|.|++.-|
T Consensus 3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~--~~~-~~~~~~el----l--~~~~iD~V~I~tp 73 (344)
T PRK10206 3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYS--HIH-FTSDLDEV----L--NDPDVKLVVVCTH 73 (344)
T ss_pred EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcC--CCc-ccCCHHHH----h--cCCCCCEEEEeCC
Confidence 355689996 32 2333434445677876 555544333333222 222 23555555 3 3567999999866
Q ss_pred CC
Q 021567 204 NP 205 (311)
Q Consensus 204 dP 205 (311)
+.
T Consensus 74 ~~ 75 (344)
T PRK10206 74 AD 75 (344)
T ss_pred ch
Confidence 54
No 351
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=67.98 E-value=44 Score=32.76 Aligned_cols=95 Identities=9% Similarity=0.053 Sum_probs=56.3
Q ss_pred EEEEeccccHHHHHHHhh--CCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCC
Q 021567 129 VVDIGSGNGLFLLGMARK--RKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPD 206 (311)
Q Consensus 129 vLDIGcGtG~~~~~lA~~--~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~ 206 (311)
++=+| .|.++..+++. ..+..++.+|.+....+.+++. ..+.++.+|+.+. ..+....-...|.+++..++..
T Consensus 3 viIiG--~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~--~~~~~~~gd~~~~-~~l~~~~~~~a~~vi~~~~~~~ 77 (453)
T PRK09496 3 IIIVG--AGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR--LDVRTVVGNGSSP-DVLREAGAEDADLLIAVTDSDE 77 (453)
T ss_pred EEEEC--CCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh--cCEEEEEeCCCCH-HHHHHcCCCcCCEEEEecCChH
Confidence 34445 48898888875 2367899999876655555431 2578888998764 2111112346788877766542
Q ss_pred CCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 207 FNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 207 ~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
. ..++....+.+.|.-.++..+
T Consensus 78 ----------~-n~~~~~~~r~~~~~~~ii~~~ 99 (453)
T PRK09496 78 ----------T-NMVACQIAKSLFGAPTTIARV 99 (453)
T ss_pred ----------H-HHHHHHHHHHhcCCCeEEEEE
Confidence 1 234445556665555555544
No 352
>PLN02740 Alcohol dehydrogenase-like
Probab=67.52 E-value=40 Score=32.36 Aligned_cols=95 Identities=21% Similarity=0.207 Sum_probs=54.3
Q ss_pred CCCeEEEEeccc-cHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEcc-----ccchhhhhhccCCCcEeEE
Q 021567 125 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATN-----ATSTFRSIVASYPGKLILV 198 (311)
Q Consensus 125 ~~~~vLDIGcGt-G~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~D-----a~~ll~~~~~~~~~s~D~V 198 (311)
.+..||=+|||. |..++++|+.....+++++|.+..-++.+++.|.+. ++..+ ..+.+.... .+.+|.+
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~--~i~~~~~~~~~~~~v~~~~---~~g~dvv 272 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITD--FINPKDSDKPVHERIREMT---GGGVDYS 272 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCcE--EEecccccchHHHHHHHHh---CCCCCEE
Confidence 356777788753 444566677653336999998777677776666543 22211 111111111 2257766
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCC-eEEEEE
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD-GKVFLQ 238 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpG-G~l~~~ 238 (311)
+=.... +..+....+.+++| |++.+.
T Consensus 273 id~~G~--------------~~~~~~a~~~~~~g~G~~v~~ 299 (381)
T PLN02740 273 FECAGN--------------VEVLREAFLSTHDGWGLTVLL 299 (381)
T ss_pred EECCCC--------------hHHHHHHHHhhhcCCCEEEEE
Confidence 433221 25667777888886 887764
No 353
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=67.01 E-value=86 Score=28.38 Aligned_cols=73 Identities=15% Similarity=0.262 Sum_probs=44.6
Q ss_pred CCCeEEEEeccccH--HHH--HHHhhCCCCeEEEEchHH----HHHHHHHHcCCCc-EEEEEccc-cchhhhhhccCCCc
Q 021567 125 AQPLVVDIGSGNGL--FLL--GMARKRKDLNFLGLELVT----HCRDSLQLSGITN-GYFIATNA-TSTFRSIVASYPGK 194 (311)
Q Consensus 125 ~~~~vLDIGcGtG~--~~~--~lA~~~p~~~vvGiDi~~----~a~~~a~~~~~~N-v~f~~~Da-~~ll~~~~~~~~~s 194 (311)
...+++|++|+-|. .++ ..|.++.+.+++-|--.+ ...+.+...++.+ ++|+.++. +++++. + ..
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~-~----~~ 115 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPG-L----KG 115 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhh-c----cC
Confidence 46889999877542 344 445667778888876432 2233333456555 69999985 445332 1 35
Q ss_pred EeEEEEeC
Q 021567 195 LILVSIQC 202 (311)
Q Consensus 195 ~D~V~i~f 202 (311)
+|.+.+.+
T Consensus 116 iDF~vVDc 123 (218)
T PF07279_consen 116 IDFVVVDC 123 (218)
T ss_pred CCEEEEeC
Confidence 78887774
No 354
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=66.92 E-value=5.4 Score=41.32 Aligned_cols=34 Identities=21% Similarity=0.319 Sum_probs=29.6
Q ss_pred CCCeEEEEeccccHHHHHHHhhCC-CCeEEEEchH
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELV 158 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi~ 158 (311)
....|||+||..|.++.-.++..| +..|+|||+.
T Consensus 44 ~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~ 78 (780)
T KOG1098|consen 44 KAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLV 78 (780)
T ss_pred ccchheeeccCCcHHHHHHHHhCCCCceEEEeeee
Confidence 467899999999999999988877 5689999974
No 355
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=66.81 E-value=37 Score=31.91 Aligned_cols=96 Identities=17% Similarity=0.119 Sum_probs=54.1
Q ss_pred CCeEEEEecc-ccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhcc-CCCcEeEEEEeCC
Q 021567 126 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVAS-YPGKLILVSIQCP 203 (311)
Q Consensus 126 ~~~vLDIGcG-tG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~-~~~s~D~V~i~fp 203 (311)
+..+|=.|+| .|..+..+|+...-..++++|....-.+.+++.|.+. ++..+-.+........ ....+|.++-...
T Consensus 167 g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~--~v~~~~~~~~~~i~~~~~~~~~d~vld~~g 244 (351)
T cd08285 167 GDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATD--IVDYKNGDVVEQILKLTGGKGVDAVIIAGG 244 (351)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCce--EecCCCCCHHHHHHHHhCCCCCcEEEECCC
Confidence 4566666776 4566677777663336899997665566666666532 2221111111111110 2235776653211
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
. ...+.++.+.|+++|++..
T Consensus 245 ~--------------~~~~~~~~~~l~~~G~~v~ 264 (351)
T cd08285 245 G--------------QDTFEQALKVLKPGGTISN 264 (351)
T ss_pred C--------------HHHHHHHHHHhhcCCEEEE
Confidence 1 2567888999999998875
No 356
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=65.93 E-value=45 Score=31.82 Aligned_cols=97 Identities=15% Similarity=0.115 Sum_probs=54.3
Q ss_pred CCCeEEEEeccc-cHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEc---cccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIAT---NATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGt-G~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~---Da~~ll~~~~~~~~~s~D~V~i 200 (311)
.+..||=+|||. |..++++|+..--.+++++|.+..-++.+++.|.+.+--... +....+.... .+.+|.++=
T Consensus 185 ~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~---~~g~d~vid 261 (368)
T TIGR02818 185 EGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEIT---DGGVDYSFE 261 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHHh---CCCCCEEEE
Confidence 356777778753 556677787753337999998877777776666532111111 1111111111 224676643
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCC-eEEEEE
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD-GKVFLQ 238 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpG-G~l~~~ 238 (311)
.-.. +..+....+.+++| |++.+.
T Consensus 262 ~~G~--------------~~~~~~~~~~~~~~~G~~v~~ 286 (368)
T TIGR02818 262 CIGN--------------VNVMRAALECCHKGWGESIII 286 (368)
T ss_pred CCCC--------------HHHHHHHHHHhhcCCCeEEEE
Confidence 2111 24567777888886 887754
No 357
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=65.37 E-value=12 Score=28.15 Aligned_cols=58 Identities=12% Similarity=0.132 Sum_probs=45.9
Q ss_pred CCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCcee
Q 021567 191 YPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV 261 (311)
Q Consensus 191 ~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~ 261 (311)
++..+|.--..||-|. --+++..+-|++|+.+.+.+|+....+.+....++.|+..+.
T Consensus 8 ~~~~lD~~Gl~CP~Pl-------------l~~kk~l~~l~~G~~l~V~~dd~~~~~di~~~~~~~G~~~~~ 65 (81)
T PRK00299 8 PDHTLDALGLRCPEPV-------------MMVRKTVRNMQPGETLLIIADDPATTRDIPSFCRFMDHELLA 65 (81)
T ss_pred cCeEEecCCCCCCHHH-------------HHHHHHHHcCCCCCEEEEEeCCccHHHHHHHHHHHcCCEEEE
Confidence 4567888778888774 335566677899999999999998888888888999987653
No 358
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=65.25 E-value=15 Score=35.70 Aligned_cols=45 Identities=27% Similarity=0.478 Sum_probs=32.3
Q ss_pred hHhhcCCCCCCeEEEEeccccHHHHHHHhh----CC----CCeEEEEchHHHHH
Q 021567 117 WSAAYHDPAQPLVVDIGSGNGLFLLGMARK----RK----DLNFLGLELVTHCR 162 (311)
Q Consensus 117 ~~~~f~~~~~~~vLDIGcGtG~~~~~lA~~----~p----~~~vvGiDi~~~a~ 162 (311)
|+. ++.|..-.++|||.|+|.++..+.+. +| ..+|.-||.|++-.
T Consensus 70 wq~-~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~ 122 (370)
T COG1565 70 WQE-LGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELR 122 (370)
T ss_pred HHH-hcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHH
Confidence 433 34434457999999999999888653 44 67899999876533
No 359
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=65.05 E-value=29 Score=34.34 Aligned_cols=115 Identities=17% Similarity=0.225 Sum_probs=64.6
Q ss_pred cccHHHHHHHhh--CCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhc------cCC----CcEeEEEEeC
Q 021567 135 GNGLFLLGMARK--RKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVA------SYP----GKLILVSIQC 202 (311)
Q Consensus 135 GtG~~~~~lA~~--~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~------~~~----~s~D~V~i~f 202 (311)
|-|..++.+|-. ..+..++|+|+.....+++.+. ..+...-+...++..... ..+ ..-|.+.+..
T Consensus 16 GLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G---~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv~iI~V 92 (436)
T COG0677 16 GLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRG---ESYIEEPDLDEVVKEAVESGKLRATTDPEELKECDVFIICV 92 (436)
T ss_pred ccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCC---cceeecCcHHHHHHHHHhcCCceEecChhhcccCCEEEEEe
Confidence 445555555443 3367999999988877776432 123333333332211110 001 2567777888
Q ss_pred CCCCCCCchhhhhhhH-HHHHHHHHhcccCCeEEEEEe-CcHHHHHHHHHHHHh
Q 021567 203 PNPDFNRPEHRWRMVQ-RSLVEAVSDLLVHDGKVFLQS-DIEEVMLRMKQQFLE 254 (311)
Q Consensus 203 pdP~~k~~h~krRl~~-~~~l~~i~rvLkpGG~l~~~t-D~~~~~~~~~~~l~~ 254 (311)
|.|.-+.+... +.. ....+.++.+|++|-.+++.+ -...--+++...+.+
T Consensus 93 PTPl~~~~~pD--ls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle 144 (436)
T COG0677 93 PTPLKKYREPD--LSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLE 144 (436)
T ss_pred cCCcCCCCCCC--hHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHh
Confidence 88864422221 111 466778899999999999864 333345566655544
No 360
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=63.94 E-value=47 Score=29.75 Aligned_cols=89 Identities=20% Similarity=0.174 Sum_probs=52.7
Q ss_pred CCeEEEEeccc-cHHHHHHHhhCCCCe-EEEEchHHHHHHHHHHcCC-CcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 126 QPLVVDIGSGN-GLFLLGMARKRKDLN-FLGLELVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 126 ~~~vLDIGcGt-G~~~~~lA~~~p~~~-vvGiDi~~~a~~~a~~~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
+..+|=.|||. |..+..+|+.. +.. +++++.+..-.+.+++.+. +.+. ...+ .. . ....+|.++-..
T Consensus 98 g~~vlI~g~g~vg~~~i~~a~~~-g~~~vi~~~~~~~~~~~~~~~g~~~~~~-~~~~--~~----~--~~~~~d~vl~~~ 167 (277)
T cd08255 98 GERVAVVGLGLVGLLAAQLAKAA-GAREVVGVDPDAARRELAEALGPADPVA-ADTA--DE----I--GGRGADVVIEAS 167 (277)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCCcEEEECCCHHHHHHHHHcCCCcccc-ccch--hh----h--cCCCCCEEEEcc
Confidence 45666678876 77778888875 355 9999976555555555551 1111 0000 00 1 234577665321
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.. ...+....+.|+++|.+...
T Consensus 168 ~~--------------~~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 168 GS--------------PSALETALRLLRDRGRVVLV 189 (277)
T ss_pred CC--------------hHHHHHHHHHhcCCcEEEEE
Confidence 11 24677788999999999864
No 361
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=63.80 E-value=35 Score=32.88 Aligned_cols=95 Identities=16% Similarity=0.167 Sum_probs=55.3
Q ss_pred CCeEEEEe-ccccHHHHHHHhhCCCCeEEEEchHHHHHHH-HHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 126 QPLVVDIG-SGNGLFLLGMARKRKDLNFLGLELVTHCRDS-LQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 126 ~~~vLDIG-cGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~-a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
+..+-=+| +|-|.++..+|+.. ..+|++||-+....+. ++..|.+..-....|-... ......-|+-+|.+... .
T Consensus 182 G~~vgI~GlGGLGh~aVq~AKAM-G~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~-~~~~~~~dg~~~~v~~~-a 258 (360)
T KOG0023|consen 182 GKWVGIVGLGGLGHMAVQYAKAM-GMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIM-KAIMKTTDGGIDTVSNL-A 258 (360)
T ss_pred CcEEEEecCcccchHHHHHHHHh-CcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHH-HHHHHhhcCcceeeeec-c
Confidence 34443444 45899999999987 6899999976533333 3445655422222122221 22222225666666422 1
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
+.-++.+...||++|.+++.
T Consensus 259 ---------------~~~~~~~~~~lk~~Gt~V~v 278 (360)
T KOG0023|consen 259 ---------------EHALEPLLGLLKVNGTLVLV 278 (360)
T ss_pred ---------------ccchHHHHHHhhcCCEEEEE
Confidence 12366778899999999874
No 362
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=63.68 E-value=66 Score=30.57 Aligned_cols=97 Identities=16% Similarity=0.154 Sum_probs=54.9
Q ss_pred CCeEEEEeccc-cHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 126 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 126 ~~~vLDIGcGt-G~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
+..||=.|+|. |..++.+|+......++++|.++.-.+.++..+.+ .++..+-.++...........+|.++-....
T Consensus 187 g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~--~~i~~~~~~~~~~v~~~~~~~~d~vld~~g~ 264 (365)
T cd08278 187 GSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGAT--HVINPKEEDLVAAIREITGGGVDYALDTTGV 264 (365)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCc--EEecCCCcCHHHHHHHHhCCCCcEEEECCCC
Confidence 45666667754 66777778776433699999876656665555543 2222211111111111013357776432211
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
...+..+.+.|+++|.++..
T Consensus 265 --------------~~~~~~~~~~l~~~G~~v~~ 284 (365)
T cd08278 265 --------------PAVIEQAVDALAPRGTLALV 284 (365)
T ss_pred --------------cHHHHHHHHHhccCCEEEEe
Confidence 15677888999999998864
No 363
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=63.59 E-value=39 Score=31.91 Aligned_cols=91 Identities=12% Similarity=0.096 Sum_probs=51.1
Q ss_pred CCCeEEEEeccc-cHHHHHHHhh-CCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 125 AQPLVVDIGSGN-GLFLLGMARK-RKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 125 ~~~~vLDIGcGt-G~~~~~lA~~-~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
.+.+||=+|||. |.++..+|++ ....+++++|.++.-++.++..+. .... .++ . .+..+|.|+=.-
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~--~~~~----~~~-~-----~~~g~d~viD~~ 230 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADE--TYLI----DDI-P-----EDLAVDHAFECV 230 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCc--eeeh----hhh-h-----hccCCcEEEECC
Confidence 467888899864 3334566765 445689999987655555543221 1110 111 1 111356664221
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
..+ ..+..++...+.|++||++.+.
T Consensus 231 G~~-----------~~~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 231 GGR-----------GSQSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred CCC-----------ccHHHHHHHHHhCcCCcEEEEE
Confidence 111 0135677788999999998864
No 364
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=63.47 E-value=60 Score=29.99 Aligned_cols=106 Identities=12% Similarity=0.093 Sum_probs=57.2
Q ss_pred EEEEeccc-c-HHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCC
Q 021567 129 VVDIGSGN-G-LFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPD 206 (311)
Q Consensus 129 vLDIGcGt-G-~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~ 206 (311)
|-=||+|. | .++..+++. +..+++.|.+....+.+.+.+. . ...+..++ + ...|.|++..|++.
T Consensus 5 IgviG~G~mG~~~a~~l~~~--g~~v~~~d~~~~~~~~~~~~g~---~-~~~~~~e~----~----~~~d~vi~~vp~~~ 70 (296)
T PRK11559 5 VGFIGLGIMGKPMSKNLLKA--GYSLVVYDRNPEAVAEVIAAGA---E-TASTAKAV----A----EQCDVIITMLPNSP 70 (296)
T ss_pred EEEEccCHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHCCC---e-ecCCHHHH----H----hcCCEEEEeCCCHH
Confidence 44567765 3 234444433 5678999987655555544432 1 12222222 1 24588888877652
Q ss_pred CCCchhhhhhhHHHHH---HHHHhcccCCeEEE-EEeCcHHHHHHHHHHHHhcCCC
Q 021567 207 FNRPEHRWRMVQRSLV---EAVSDLLVHDGKVF-LQSDIEEVMLRMKQQFLEYGKG 258 (311)
Q Consensus 207 ~k~~h~krRl~~~~~l---~~i~rvLkpGG~l~-~~tD~~~~~~~~~~~l~~~g~~ 258 (311)
+. +..+ +.+...+++|-.++ +.|-.....+.+.+.+.+.|..
T Consensus 71 ----~~------~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~ 116 (296)
T PRK11559 71 ----HV------KEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIE 116 (296)
T ss_pred ----HH------HHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence 11 1222 34556677776665 3444455566777777776643
No 365
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=63.40 E-value=37 Score=31.32 Aligned_cols=83 Identities=16% Similarity=0.061 Sum_probs=46.5
Q ss_pred EEEEeccc--cHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCC
Q 021567 129 VVDIGSGN--GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPD 206 (311)
Q Consensus 129 vLDIGcGt--G~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~ 206 (311)
|.=||+|. |.++..+++. +..++++|......+.+...+.- .....+.. . -...|.|++..|...
T Consensus 3 I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~~g~~--~~~~~~~~-~--------~~~aDlVilavp~~~ 69 (279)
T PRK07417 3 IGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIERGLV--DEASTDLS-L--------LKDCDLVILALPIGL 69 (279)
T ss_pred EEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHCCCc--ccccCCHh-H--------hcCCCEEEEcCCHHH
Confidence 33466654 3334444433 56899999887777776655431 11111111 1 124588887765331
Q ss_pred CCCchhhhhhhHHHHHHHHHhcccCCeEE
Q 021567 207 FNRPEHRWRMVQRSLVEAVSDLLVHDGKV 235 (311)
Q Consensus 207 ~k~~h~krRl~~~~~l~~i~rvLkpGG~l 235 (311)
..++++++...++++..+
T Consensus 70 -----------~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 70 -----------LLPPSEQLIPALPPEAIV 87 (279)
T ss_pred -----------HHHHHHHHHHhCCCCcEE
Confidence 146778888888877544
No 366
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=63.32 E-value=3.6 Score=35.82 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=22.0
Q ss_pred HHHHHHHHhcccCCeEEEEEeCcHHHH
Q 021567 219 RSLVEAVSDLLVHDGKVFLQSDIEEVM 245 (311)
Q Consensus 219 ~~~l~~i~rvLkpGG~l~~~tD~~~~~ 245 (311)
..++.++.|+|||||.+++..++....
T Consensus 36 ~~~~~~~~rvLk~~g~~~i~~~~~~~~ 62 (231)
T PF01555_consen 36 EEWLKECYRVLKPGGSIFIFIDDREIA 62 (231)
T ss_dssp HHHHHHHHHHEEEEEEEEEEE-CCEEC
T ss_pred HHHHHHHHhhcCCCeeEEEEecchhhh
Confidence 678999999999999999987775543
No 367
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=61.69 E-value=33 Score=26.97 Aligned_cols=80 Identities=13% Similarity=-0.008 Sum_probs=53.1
Q ss_pred EeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCch
Q 021567 132 IGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPE 211 (311)
Q Consensus 132 IGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h 211 (311)
+.||.|..+.-++++ ..+.++++|+ ++.+......++ +. .-..+|.+.+. |.
T Consensus 5 l~C~~GaSSs~la~k--------------m~~~a~~~gi-~~~i~a~~~~e~-~~----~~~~~Dvill~---PQ----- 56 (99)
T cd05565 5 VLCAGGGTSGLLANA--------------LNKGAKERGV-PLEAAAGAYGSH-YD----MIPDYDLVILA---PQ----- 56 (99)
T ss_pred EECCCCCCHHHHHHH--------------HHHHHHHCCC-cEEEEEeeHHHH-HH----hccCCCEEEEc---Ch-----
Confidence 788999766666655 3444566777 577777777665 22 23456877654 21
Q ss_pred hhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHH
Q 021567 212 HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVM 245 (311)
Q Consensus 212 ~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~ 245 (311)
- +-.++++...+.+-|.-+...|...|.
T Consensus 57 v------~~~~~~i~~~~~~~~ipv~~I~~~~Yg 84 (99)
T cd05565 57 M------ASYYDELKKDTDRLGIKLVTTTGKQYI 84 (99)
T ss_pred H------HHHHHHHHHHhhhcCCCEEEeCHHHHh
Confidence 1 244677778888888877778888887
No 368
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=61.18 E-value=89 Score=30.82 Aligned_cols=122 Identities=16% Similarity=0.209 Sum_probs=62.2
Q ss_pred eEEEEeccccHHHHH--HHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhh-------hccCCCcEeEE
Q 021567 128 LVVDIGSGNGLFLLG--MARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSI-------VASYPGKLILV 198 (311)
Q Consensus 128 ~vLDIGcGtG~~~~~--lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~-------~~~~~~s~D~V 198 (311)
+|-=||.|.-...++ |+++ +.+++|+|.++...+.++.... .+...+...++... ........|.|
T Consensus 5 kI~VIGlG~~G~~~A~~La~~--G~~V~~~D~~~~~v~~l~~g~~---~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvv 79 (415)
T PRK11064 5 TISVIGLGYIGLPTAAAFASR--QKQVIGVDINQHAVDTINRGEI---HIVEPDLDMVVKTAVEGGYLRATTTPEPADAF 79 (415)
T ss_pred EEEEECcchhhHHHHHHHHhC--CCEEEEEeCCHHHHHHHHCCCC---CcCCCCHHHHHHHHhhcCceeeecccccCCEE
Confidence 355566664333322 3333 5789999987766555432211 12222222221100 00011246888
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeC-cHHHHHHHHHHHHhc
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD-IEEVMLRMKQQFLEY 255 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD-~~~~~~~~~~~l~~~ 255 (311)
++..|+|.-.+....-..+ ...++.+...|++|-.+++.|- .....+.+...+.+.
T Consensus 80 ii~vptp~~~~~~~dl~~v-~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~ 136 (415)
T PRK11064 80 LIAVPTPFKGDHEPDLTYV-EAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEA 136 (415)
T ss_pred EEEcCCCCCCCCCcChHHH-HHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence 8888887422211110111 3567888899999888776543 344555666655553
No 369
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=61.03 E-value=20 Score=32.85 Aligned_cols=79 Identities=16% Similarity=0.197 Sum_probs=49.9
Q ss_pred HHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhH
Q 021567 139 FLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQ 218 (311)
Q Consensus 139 ~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~ 218 (311)
++.+|.++.++..++|+|..+..++.+.+.|...-. ..+. +. + ...|+|++.-|-. ..
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~--~~~~-~~----~----~~~DlvvlavP~~-----------~~ 58 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEA--STDI-EA----V----EDADLVVLAVPVS-----------AI 58 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEE--ESHH-HH----G----GCCSEEEE-S-HH-----------HH
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeec--cCCH-hH----h----cCCCEEEEcCCHH-----------HH
Confidence 456788888889999999998888888777753211 1111 11 1 2348888764421 23
Q ss_pred HHHHHHHHhcccCCeEEEEEe
Q 021567 219 RSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 219 ~~~l~~i~rvLkpGG~l~~~t 239 (311)
.++++++...+++|+.+.=.+
T Consensus 59 ~~~l~~~~~~~~~~~iv~Dv~ 79 (258)
T PF02153_consen 59 EDVLEEIAPYLKPGAIVTDVG 79 (258)
T ss_dssp HHHHHHHHCGS-TTSEEEE--
T ss_pred HHHHHHhhhhcCCCcEEEEeC
Confidence 689999999999998776433
No 370
>PRK10458 DNA cytosine methylase; Provisional
Probab=60.71 E-value=1.3e+02 Score=30.47 Aligned_cols=132 Identities=14% Similarity=0.018 Sum_probs=76.5
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcC--CCcEEEEEccccchhhh------------hhccC
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG--ITNGYFIATNATSTFRS------------IVASY 191 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~--~~Nv~f~~~Da~~ll~~------------~~~~~ 191 (311)
.-+++|+-||.|.+.+.+-... ...+.++|+...|.+.-+.+- .++...+.+|+.++... .+...
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG-~~~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~~~ 166 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIG-GQCVFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDITLSHKEGVSDEEAAEHIRQH 166 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcC-CEEEEEEechHHHHHHHHHHcCCCCccceeccChhhCccccccccchhhhhhhhhcc
Confidence 4589999999999999986652 236788999888877655442 23445666777765210 00001
Q ss_pred CCcEeEEEEeCCCCCCCCch-hhh------h----hhHHHHHHHHH---hcccCCeEEEEE-------eCcHHHHHHHHH
Q 021567 192 PGKLILVSIQCPNPDFNRPE-HRW------R----MVQRSLVEAVS---DLLVHDGKVFLQ-------SDIEEVMLRMKQ 250 (311)
Q Consensus 192 ~~s~D~V~i~fpdP~~k~~h-~kr------R----l~~~~~l~~i~---rvLkpGG~l~~~-------tD~~~~~~~~~~ 250 (311)
-..+|+++..+|-.-+.... .++ + -.+..++-++. +.++|.-.+ +. .+....++.+++
T Consensus 167 ~p~~DvL~gGpPCQ~FS~AG~~k~~~~gr~~g~~~d~rg~Lf~~~~rii~~~kPk~fv-lENV~gl~s~~~g~~f~~i~~ 245 (467)
T PRK10458 167 IPDHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECETQGTLFFDVARIIDAKRPAIFV-LENVKNLKSHDKGKTFRIIMQ 245 (467)
T ss_pred CCCCCEEEEcCCCCccchhcccccccccccccccCCccccHHHHHHHHHHHhCCCEEE-EeCcHhhhcccccHHHHHHHH
Confidence 12578888888765554211 110 0 00112333333 345666333 32 233446778888
Q ss_pred HHHhcCCCc
Q 021567 251 QFLEYGKGK 259 (311)
Q Consensus 251 ~l~~~g~~~ 259 (311)
.|++.|+..
T Consensus 246 ~L~~lGY~v 254 (467)
T PRK10458 246 TLDELGYDV 254 (467)
T ss_pred HHHHcCCeE
Confidence 899999875
No 371
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=60.65 E-value=68 Score=29.91 Aligned_cols=95 Identities=12% Similarity=0.127 Sum_probs=57.4
Q ss_pred CCCeEEEEec--cccHHHHHHHhhCCCCeEEEEchHHHHHHHHHH-cCCCcEEEEE-c-cccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGS--GNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL-SGITNGYFIA-T-NATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGc--GtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~-~~~~Nv~f~~-~-Da~~ll~~~~~~~~~s~D~V~ 199 (311)
.+..||=.|+ |.|..+.++|+.. +.++++++.+..-.+.+++ .|.+.+--.. . |..+.+... ....+|.++
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~~-G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~---~~~gvd~v~ 226 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKLK-GCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRY---FPNGIDIYF 226 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHh---CCCCcEEEE
Confidence 3567777775 6788888999875 6788888876655566655 5654321111 1 221111211 124578775
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
-... ...+....+.|+++|.++..
T Consensus 227 d~~g---------------~~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 227 DNVG---------------GKMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred ECCC---------------HHHHHHHHHHhccCcEEEEe
Confidence 3211 14567788999999998863
No 372
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=60.64 E-value=69 Score=29.90 Aligned_cols=95 Identities=15% Similarity=0.083 Sum_probs=53.4
Q ss_pred CCeEEEEeccc-cHHHHHHHhhCCCCe-EEEEchHHHHHHHHHHcCCCcEEEEE-cc----ccchhhhhhccCCCcEeEE
Q 021567 126 QPLVVDIGSGN-GLFLLGMARKRKDLN-FLGLELVTHCRDSLQLSGITNGYFIA-TN----ATSTFRSIVASYPGKLILV 198 (311)
Q Consensus 126 ~~~vLDIGcGt-G~~~~~lA~~~p~~~-vvGiDi~~~a~~~a~~~~~~Nv~f~~-~D----a~~ll~~~~~~~~~s~D~V 198 (311)
+..+|=.|+|. |..+.++|+... .+ ++.++-++.-.+.+++.+.+++.-.. .+ ...+ .... ....+|.+
T Consensus 163 g~~vlI~g~g~vG~~a~~lak~~G-~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~-~~~~--~~~~~d~v 238 (343)
T cd05285 163 GDTVLVFGAGPIGLLTAAVAKAFG-ATKVVVTDIDPSRLEFAKELGATHTVNVRTEDTPESAEKI-AELL--GGKGPDVV 238 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHHcCCcEEeccccccchhHHHHH-HHHh--CCCCCCEE
Confidence 44555568766 778888888754 44 88887655444444444443321111 11 1112 1112 23447877
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
+-... . ...+....+.|+++|+++..
T Consensus 239 ld~~g-~-------------~~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 239 IECTG-A-------------ESCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred EECCC-C-------------HHHHHHHHHHhhcCCEEEEE
Confidence 54311 1 24678888999999998764
No 373
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=60.54 E-value=14 Score=37.80 Aligned_cols=97 Identities=11% Similarity=0.164 Sum_probs=66.0
Q ss_pred CCeEEEEeccccHHHHHH---Hhh-CCCCeEEEEchHHHHHHHHHH---cCC-CcEEEEEccccchhhhhhccCCCcEeE
Q 021567 126 QPLVVDIGSGNGLFLLGM---ARK-RKDLNFLGLELVTHCRDSLQL---SGI-TNGYFIATNATSTFRSIVASYPGKLIL 197 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~l---A~~-~p~~~vvGiDi~~~a~~~a~~---~~~-~Nv~f~~~Da~~ll~~~~~~~~~s~D~ 197 (311)
..+++=+|.|.|-+.-+. |+. .....+++||-...|...++. ... ..|+++.+|.... +.+....|.
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w-----~ap~eq~DI 442 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKW-----NAPREQADI 442 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEecccccc-----CCchhhccc
Confidence 357888999999986544 332 446789999976555443332 222 4599999998887 212366776
Q ss_pred EE----EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 198 VS----IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 198 V~----i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
++ =.|-|-. +.++-|..+.+.|||+|..+=
T Consensus 443 ~VSELLGSFGDNE----------LSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 443 IVSELLGSFGDNE----------LSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred hHHHhhccccCcc----------CCHHHHHHHHhhcCCCceEcc
Confidence 64 2355543 457999999999999987653
No 374
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=60.03 E-value=18 Score=29.66 Aligned_cols=35 Identities=14% Similarity=0.074 Sum_probs=20.9
Q ss_pred EEecccc--HHHHHHH--hhCCCCeEEEEchHHHHHHHH
Q 021567 131 DIGSGNG--LFLLGMA--RKRKDLNFLGLELVTHCRDSL 165 (311)
Q Consensus 131 DIGcGtG--~~~~~lA--~~~p~~~vvGiDi~~~a~~~a 165 (311)
|||+..| .....++ ...|...++++|-.+...+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l 39 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKL 39 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHH
Confidence 8999999 6666664 457889999999765544433
No 375
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=59.97 E-value=27 Score=32.92 Aligned_cols=138 Identities=16% Similarity=0.129 Sum_probs=85.0
Q ss_pred cccHHHHHHHhh--CCCCeEEEEchHHHH-HHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCch
Q 021567 135 GNGLFLLGMARK--RKDLNFLGLELVTHC-RDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPE 211 (311)
Q Consensus 135 GtG~~~~~lA~~--~p~~~vvGiDi~~~a-~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h 211 (311)
|.|.....||++ ..+..+++.|..... .+.++..|.. .....+ +. -...|.|++..||+-
T Consensus 7 GLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~---~a~s~~-ea--------a~~aDvVitmv~~~~----- 69 (286)
T COG2084 7 GLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGAT---VAASPA-EA--------AAEADVVITMLPDDA----- 69 (286)
T ss_pred cCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCc---ccCCHH-HH--------HHhCCEEEEecCCHH-----
Confidence 677888888876 336789999987544 6766665542 111111 11 235688877777662
Q ss_pred hhhhhhHHHHH--HHHHhcccCCeEEE-EEeCcHHHHHHHHHHHHhcCCCceeeeccccccccCCCCCCC--CC------
Q 021567 212 HRWRMVQRSLV--EAVSDLLVHDGKVF-LQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLG--EN------ 280 (311)
Q Consensus 212 ~krRl~~~~~l--~~i~rvLkpGG~l~-~~tD~~~~~~~~~~~l~~~g~~~~~~~~d~y~~~~~~~~~~~--~~------ 280 (311)
.+..-++ +.+...++||..++ ++|-.......+.+.+++.|...+.. +.+|=.. .+
T Consensus 70 ----~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDA---------PVsGg~~~A~~GtLtim 136 (286)
T COG2084 70 ----AVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDA---------PVSGGVPGAAAGTLTIM 136 (286)
T ss_pred ----HHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEec---------CccCCchhhhhCceEEE
Confidence 1222222 45777788999877 45777888888999999998765422 1222100 01
Q ss_pred CCCCCCHHHHH---HHHcCCCeEEE
Q 021567 281 SFGVRSDWEQH---VIDRGAPMYRL 302 (311)
Q Consensus 281 ~~~~~T~yE~~---~~~~G~~i~~~ 302 (311)
-......||+. +.+.|+.|+++
T Consensus 137 vGG~~~~f~r~~pvl~~~g~~i~~~ 161 (286)
T COG2084 137 VGGDAEAFERAKPVLEAMGKNIVHV 161 (286)
T ss_pred eCCCHHHHHHHHHHHHHhcCceEEE
Confidence 12334567765 88889988875
No 376
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=59.23 E-value=98 Score=28.83 Aligned_cols=106 Identities=18% Similarity=0.172 Sum_probs=58.7
Q ss_pred EeccccHHHHHHHhh--CCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCC
Q 021567 132 IGSGNGLFLLGMARK--RKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNR 209 (311)
Q Consensus 132 IGcGtG~~~~~lA~~--~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~ 209 (311)
||+| ..+..+|++ ..+..+++.|.+....+.+.+.+. .. ..+..++... ....|.|++..|++.
T Consensus 6 IGlG--~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~---~~-~~~~~e~~~~-----~~~~dvvi~~v~~~~--- 71 (301)
T PRK09599 6 IGLG--RMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGA---TG-ADSLEELVAK-----LPAPRVVWLMVPAGE--- 71 (301)
T ss_pred Eccc--HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCC---ee-cCCHHHHHhh-----cCCCCEEEEEecCCc---
Confidence 5554 454444443 235688999988766666655442 21 2233333111 012477777766542
Q ss_pred chhhhhhhHHHHHHHHHhcccCCeEEEEE-eCcHHHHHHHHHHHHhcCCC
Q 021567 210 PEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-SDIEEVMLRMKQQFLEYGKG 258 (311)
Q Consensus 210 ~h~krRl~~~~~l~~i~rvLkpGG~l~~~-tD~~~~~~~~~~~l~~~g~~ 258 (311)
..+..++.+...|++|..++-. |-.........+.+.+.|..
T Consensus 72 -------~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~ 114 (301)
T PRK09599 72 -------ITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH 114 (301)
T ss_pred -------HHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCE
Confidence 1135567777888887654432 34444555666777777754
No 377
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=59.10 E-value=88 Score=29.13 Aligned_cols=70 Identities=19% Similarity=0.081 Sum_probs=40.0
Q ss_pred CeEEEEecc-ccH-HHHHHHhhCCC-CeEEEE-chHH-HHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 127 PLVVDIGSG-NGL-FLLGMARKRKD-LNFLGL-ELVT-HCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 127 ~~vLDIGcG-tG~-~~~~lA~~~p~-~~vvGi-Di~~-~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
-+|-=|||| .+. .-.......++ ..++++ |.+. ++.+.+++.+.. -...|.+++ + .+..+|.|++.
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~---~~~~~~~~l----l--~~~~iD~V~Ia 74 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIA---KAYTDLEEL----L--ADPDIDAVYIA 74 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCC---cccCCHHHH----h--cCCCCCEEEEc
Confidence 356679998 331 12223333444 366666 6654 455555555554 344555555 3 35669999998
Q ss_pred CCCC
Q 021567 202 CPNP 205 (311)
Q Consensus 202 fpdP 205 (311)
-|+.
T Consensus 75 tp~~ 78 (342)
T COG0673 75 TPNA 78 (342)
T ss_pred CCCh
Confidence 7765
No 378
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=58.66 E-value=73 Score=29.46 Aligned_cols=102 Identities=14% Similarity=0.065 Sum_probs=59.5
Q ss_pred cccHHHHHHHhh--CCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchh
Q 021567 135 GNGLFLLGMARK--RKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEH 212 (311)
Q Consensus 135 GtG~~~~~lA~~--~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~ 212 (311)
|.|.++..+|+. ..+.++++.|......+.+.+.+. . ...+..+. . ...|.|++..|++. .
T Consensus 3 GlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~---~-~~~s~~~~----~----~~advVil~vp~~~-----~ 65 (288)
T TIGR01692 3 GLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGA---Q-AAASPAEA----A----EGADRVITMLPAGQ-----H 65 (288)
T ss_pred cccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCC---e-ecCCHHHH----H----hcCCEEEEeCCChH-----H
Confidence 566666666654 234689999987766666655443 1 12222222 1 23488888877652 0
Q ss_pred hhhhhHHHHH---HHHHhcccCCeEEEE-EeCcHHHHHHHHHHHHhcCCC
Q 021567 213 RWRMVQRSLV---EAVSDLLVHDGKVFL-QSDIEEVMLRMKQQFLEYGKG 258 (311)
Q Consensus 213 krRl~~~~~l---~~i~rvLkpGG~l~~-~tD~~~~~~~~~~~l~~~g~~ 258 (311)
+ +.++ +.+...+++|-.++- .|-.......+.+.+.+.|..
T Consensus 66 ----~-~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~ 110 (288)
T TIGR01692 66 ----V-ISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAV 110 (288)
T ss_pred ----H-HHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence 1 2344 456667777765543 344566677777888877754
No 379
>PRK08507 prephenate dehydrogenase; Validated
Probab=58.24 E-value=43 Score=30.71 Aligned_cols=84 Identities=12% Similarity=0.087 Sum_probs=46.0
Q ss_pred EEEEeccc--cHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCC
Q 021567 129 VVDIGSGN--GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPD 206 (311)
Q Consensus 129 vLDIGcGt--G~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~ 206 (311)
|.=||+|. |.++..+++......++++|.+....+.+.+.|... . ..+..+. .. .|.|++..|+..
T Consensus 3 I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~--~-~~~~~~~--------~~-aD~Vilavp~~~ 70 (275)
T PRK08507 3 IGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVD--E-IVSFEEL--------KK-CDVIFLAIPVDA 70 (275)
T ss_pred EEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCc--c-cCCHHHH--------hc-CCEEEEeCcHHH
Confidence 34466654 333444444332357999998776666665555311 0 1121111 12 688888766431
Q ss_pred CCCchhhhhhhHHHHHHHHHhcccCCeEEE
Q 021567 207 FNRPEHRWRMVQRSLVEAVSDLLVHDGKVF 236 (311)
Q Consensus 207 ~k~~h~krRl~~~~~l~~i~rvLkpGG~l~ 236 (311)
..+.++++.. +++|..+.
T Consensus 71 -----------~~~~~~~l~~-l~~~~iv~ 88 (275)
T PRK08507 71 -----------IIEILPKLLD-IKENTTII 88 (275)
T ss_pred -----------HHHHHHHHhc-cCCCCEEE
Confidence 2467778888 88876544
No 380
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=57.76 E-value=98 Score=28.35 Aligned_cols=95 Identities=14% Similarity=0.055 Sum_probs=57.0
Q ss_pred CCeEEEEe--ccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 126 QPLVVDIG--SGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 126 ~~~vLDIG--cGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
+..+|=.| .|.|..++++|+.. +..+++++-+..-.+.+++.|.+.+ +..+-.++...........+|.++=. .
T Consensus 144 g~~vlI~ga~g~vG~~aiqlA~~~-G~~vi~~~~s~~~~~~l~~~Ga~~v--i~~~~~~~~~~v~~~~~~gvd~vld~-~ 219 (329)
T cd08294 144 GETVVVNGAAGAVGSLVGQIAKIK-GCKVIGCAGSDDKVAWLKELGFDAV--FNYKTVSLEEALKEAAPDGIDCYFDN-V 219 (329)
T ss_pred CCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCCCEE--EeCCCccHHHHHHHHCCCCcEEEEEC-C
Confidence 45666666 57788889999875 6789998877666666666665432 22221222111111113457776522 1
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
. ...++...+.|+++|++...
T Consensus 220 g--------------~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 220 G--------------GEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred C--------------HHHHHHHHHhhccCCEEEEE
Confidence 1 24567888999999998753
No 381
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=57.72 E-value=74 Score=31.36 Aligned_cols=57 Identities=11% Similarity=-0.028 Sum_probs=39.8
Q ss_pred CeEEEEeccc-cHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccch
Q 021567 127 PLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATST 183 (311)
Q Consensus 127 ~~vLDIGcGt-G~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~l 183 (311)
.+||=||||. |........++-+.+|+..|.+....+++......+++.++.|+.+.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~ 59 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADV 59 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccCh
Confidence 3588899954 33333332234357999999987777777666556899999999875
No 382
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=57.14 E-value=73 Score=29.69 Aligned_cols=96 Identities=15% Similarity=0.078 Sum_probs=52.5
Q ss_pred CCeEEEEeccc-cHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcE-EEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 126 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNG-YFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 126 ~~~vLDIGcGt-G~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv-~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
+..+|=.|+|. |..+..+|+.....++++++-++.-...+++.+.+.+ .....+.. .+.... ....+|.++-...
T Consensus 164 g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~--~~~~vd~vld~~g 240 (341)
T cd05281 164 GKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADVVINPREEDVV-EVKSVT--DGTGVDVVLEMSG 240 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcceeeCcccccHH-HHHHHc--CCCCCCEEEECCC
Confidence 44455567754 6677888887643268888755544444455554321 11111221 112111 2345777753311
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
. ...+.++.+.|+++|.+...
T Consensus 241 ~--------------~~~~~~~~~~l~~~G~~v~~ 261 (341)
T cd05281 241 N--------------PKAIEQGLKALTPGGRVSIL 261 (341)
T ss_pred C--------------HHHHHHHHHHhccCCEEEEE
Confidence 1 24577788999999998764
No 383
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=57.00 E-value=64 Score=30.21 Aligned_cols=106 Identities=15% Similarity=0.119 Sum_probs=62.6
Q ss_pred CeEEEEeccc--cHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 127 PLVVDIGSGN--GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 127 ~~vLDIGcGt--G~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
.+|+=+|.|- |.++..+.++.....++|.|.+....+.+...+.. .-..+.... . .....|+|++..|-
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~---d~~~~~~~~-~-----~~~~aD~VivavPi 74 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVI---DELTVAGLA-E-----AAAEADLVIVAVPI 74 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcc---cccccchhh-h-----hcccCCEEEEeccH
Confidence 4566666552 44455555567777899999988777776655532 111111101 0 23456888887653
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhc
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY 255 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~ 255 (311)
. ...++++++...|++|..+. |.-..-...++.++++
T Consensus 75 ~-----------~~~~~l~~l~~~l~~g~iv~---Dv~S~K~~v~~a~~~~ 111 (279)
T COG0287 75 E-----------ATEEVLKELAPHLKKGAIVT---DVGSVKSSVVEAMEKY 111 (279)
T ss_pred H-----------HHHHHHHHhcccCCCCCEEE---ecccccHHHHHHHHHh
Confidence 2 23689999999999998764 4433333444444443
No 384
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=56.50 E-value=1.1e+02 Score=28.39 Aligned_cols=105 Identities=17% Similarity=0.146 Sum_probs=59.2
Q ss_pred cccHHHHHHHhh--CCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchh
Q 021567 135 GNGLFLLGMARK--RKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEH 212 (311)
Q Consensus 135 GtG~~~~~lA~~--~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~ 212 (311)
|.|..+..+|+. ..+..+++.|......+.+++.+. . ...+..++... ....|.|++..|++.
T Consensus 7 GlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~---~-~~~s~~~~~~~-----~~~advVi~~vp~~~------ 71 (299)
T PRK12490 7 GLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGI---T-ARHSLEELVSK-----LEAPRTIWVMVPAGE------ 71 (299)
T ss_pred cccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCC---e-ecCCHHHHHHh-----CCCCCEEEEEecCch------
Confidence 455666666554 235678899987655555544442 1 12233333110 112477877766652
Q ss_pred hhhhhHHHHHHHHHhcccCCeEEEEE-eCcHHHHHHHHHHHHhcCCC
Q 021567 213 RWRMVQRSLVEAVSDLLVHDGKVFLQ-SDIEEVMLRMKQQFLEYGKG 258 (311)
Q Consensus 213 krRl~~~~~l~~i~rvLkpGG~l~~~-tD~~~~~~~~~~~l~~~g~~ 258 (311)
..+..++.+...|++|-.++-. |-.......+.+.+.+.|..
T Consensus 72 ----~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~ 114 (299)
T PRK12490 72 ----VTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH 114 (299)
T ss_pred ----HHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe
Confidence 1135667777888887765543 44455566777777777743
No 385
>PLN02702 L-idonate 5-dehydrogenase
Probab=56.47 E-value=81 Score=29.80 Aligned_cols=99 Identities=15% Similarity=0.114 Sum_probs=55.6
Q ss_pred CCeEEEEecc-ccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEE---ccccchhhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIA---TNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcG-tG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~---~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
+..+|=+|+| .|..++.+|+...-..++++|.+....+.++..+.+.+.... .+...-+...-......+|.++-.
T Consensus 182 g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vid~ 261 (364)
T PLN02702 182 ETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADEIVLVSTNIEDVESEVEEIQKAMGGGIDVSFDC 261 (364)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEecCcccccHHHHHHHHhhhcCCCCCEEEEC
Confidence 4566667764 466677778875434688999776666666666654332221 121111111100112357776543
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
... ...+..+.+.|+++|++...
T Consensus 262 ~g~--------------~~~~~~~~~~l~~~G~~v~~ 284 (364)
T PLN02702 262 VGF--------------NKTMSTALEATRAGGKVCLV 284 (364)
T ss_pred CCC--------------HHHHHHHHHHHhcCCEEEEE
Confidence 111 24578888999999998754
No 386
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=56.07 E-value=83 Score=29.32 Aligned_cols=96 Identities=13% Similarity=0.088 Sum_probs=52.9
Q ss_pred CCeEEEEecc-ccHHHHHHHhhCCCCe-EEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhc-cCCCcEeEEEEeC
Q 021567 126 QPLVVDIGSG-NGLFLLGMARKRKDLN-FLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVA-SYPGKLILVSIQC 202 (311)
Q Consensus 126 ~~~vLDIGcG-tG~~~~~lA~~~p~~~-vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~-~~~~s~D~V~i~f 202 (311)
+..+|=.|+| .|..+..+|+.. +.+ +++++-+++..+.+++.+.+. ++..+..++.+.+.. .....+|.++-..
T Consensus 162 g~~vlI~~~g~vg~~a~~la~~~-G~~~v~~~~~~~~~~~~~~~~g~~~--~v~~~~~~~~~~l~~~~~~~~~d~vld~~ 238 (340)
T TIGR00692 162 GKSVLVTGAGPIGLMAIAVAKAS-GAYPVIVSDPNEYRLELAKKMGATY--VVNPFKEDVVKEVADLTDGEGVDVFLEMS 238 (340)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhCCcE--EEcccccCHHHHHHHhcCCCCCCEEEECC
Confidence 3444446765 466677788775 454 888877666666655555432 221111111111111 1234577775331
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.. ...+.++.+.|+++|.+...
T Consensus 239 g~--------------~~~~~~~~~~l~~~g~~v~~ 260 (340)
T TIGR00692 239 GA--------------PKALEQGLQAVTPGGRVSLL 260 (340)
T ss_pred CC--------------HHHHHHHHHhhcCCCEEEEE
Confidence 11 25677888999999998764
No 387
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=55.27 E-value=71 Score=30.36 Aligned_cols=96 Identities=14% Similarity=0.084 Sum_probs=59.2
Q ss_pred CCeEEEEe--ccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCc-EEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 126 QPLVVDIG--SGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 126 ~~~vLDIG--cGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~N-v~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
+..||=.| .|-|.++++||+..-. .++++-.+.+-.+.+++.|.+. +.+...|..+-..+.. ....+|.|+-.
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t--~g~gvDvv~D~- 218 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELT--GGKGVDVVLDT- 218 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHc--CCCCceEEEEC-
Confidence 56777777 5678899999998633 5666655443333666676543 2233344333322222 22358888633
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+....+.+..+.|+++|++...-
T Consensus 219 --------------vG~~~~~~~l~~l~~~G~lv~ig 241 (326)
T COG0604 219 --------------VGGDTFAASLAALAPGGRLVSIG 241 (326)
T ss_pred --------------CCHHHHHHHHHHhccCCEEEEEe
Confidence 12466777889999999998753
No 388
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=55.04 E-value=28 Score=33.85 Aligned_cols=106 Identities=14% Similarity=0.103 Sum_probs=64.9
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHH-----------HHHHcCCC--cEEEEEccccchhhhhhccC
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD-----------SLQLSGIT--NGYFIATNATSTFRSIVASY 191 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~-----------~a~~~~~~--Nv~f~~~Da~~ll~~~~~~~ 191 (311)
++.+|+|==-|||.++...|.- ++.++|.||.-+..+ +.++.|.. -+.++.+|....- +- .
T Consensus 208 pGdivyDPFVGTGslLvsaa~F--Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~---~r-s 281 (421)
T KOG2671|consen 208 PGDIVYDPFVGTGSLLVSAAHF--GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPP---LR-S 281 (421)
T ss_pred CCCEEecCccccCceeeehhhh--cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcc---hh-h
Confidence 5789999999999999988865 789999998543322 22233421 2556666655430 11 2
Q ss_pred CCcEeEEEEeCCCCC---------------------------CCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 192 PGKLILVSIQCPNPD---------------------------FNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 192 ~~s~D~V~i~fpdP~---------------------------~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
...||.|+.. .|. |+..+...-.+-..+|.-.+++|.-||++++-
T Consensus 282 n~~fDaIvcD--PPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w 353 (421)
T KOG2671|consen 282 NLKFDAIVCD--PPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFW 353 (421)
T ss_pred cceeeEEEeC--CCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEe
Confidence 5678888653 111 11111111111246677788999999999874
No 389
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=54.77 E-value=68 Score=29.94 Aligned_cols=90 Identities=19% Similarity=0.165 Sum_probs=51.1
Q ss_pred CeEEEEeccc-c-HHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 127 PLVVDIGSGN-G-LFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 127 ~~vLDIGcGt-G-~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
.+|.=||+|. | .++..+++......++++|..+...+.+++.+... . ...+..+. + ...|.|++.-|.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~-~-~~~~~~~~----~----~~aDvViiavp~ 76 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGD-R-VTTSAAEA----V----KGADLVILCVPV 76 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCc-e-ecCCHHHH----h----cCCCEEEECCCH
Confidence 4577788876 2 23333333322247999998877666666555311 1 11221111 1 245888777554
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
+. ...+++++...+++|..+..
T Consensus 77 ~~-----------~~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 77 GA-----------SGAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred HH-----------HHHHHHHHHhhCCCCCEEEe
Confidence 31 14667788888899886654
No 390
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=54.76 E-value=1e+02 Score=28.80 Aligned_cols=96 Identities=20% Similarity=0.260 Sum_probs=52.1
Q ss_pred CCeEEEEecc-ccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 126 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 126 ~~~vLDIGcG-tG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
+..||=.|+| .|..+..+|+...-.+++.++.+..-...+.+.|.+ .++..+-....+.......+.+|.++-....
T Consensus 176 ~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~d~vid~~g~ 253 (350)
T cd08240 176 DEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAAGAD--VVVNGSDPDAAKRIIKAAGGGVDAVIDFVNN 253 (350)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCc--EEecCCCccHHHHHHHHhCCCCcEEEECCCC
Confidence 4567767765 355566677765333788888765555555555542 2222211111111111112257777533111
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
...+....+.|+++|+++.
T Consensus 254 --------------~~~~~~~~~~l~~~g~~v~ 272 (350)
T cd08240 254 --------------SATASLAFDILAKGGKLVL 272 (350)
T ss_pred --------------HHHHHHHHHHhhcCCeEEE
Confidence 2567888899999999875
No 391
>KOG4174 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.34 E-value=1.3e+02 Score=28.12 Aligned_cols=130 Identities=15% Similarity=0.165 Sum_probs=76.0
Q ss_pred CCeEEEEeccccHHHHHHHhhCC--CCeEEEEch--HH--------HHHHH---HHHcCCCcEEEEEccccchhhhhhcc
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRK--DLNFLGLEL--VT--------HCRDS---LQLSGITNGYFIATNATSTFRSIVAS 190 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p--~~~vvGiDi--~~--------~a~~~---a~~~~~~Nv~f~~~Da~~ll~~~~~~ 190 (311)
...||.+|=|.=.++..+|..+- ..++++..+ .+ .+..+ ++..|. .-+...|+..+- .....
T Consensus 57 ~~~ill~gEgdFSfs~sl~~~~g~sa~ni~atSlDsk~~dl~~KY~~~~~nv~~Lk~lG~--~I~h~Vdv~sl~-~~~~~ 133 (282)
T KOG4174|consen 57 KQKILLVGEGDFSFSLSLAPHFGRSAGNITATSLDSKEFDLKQKYPDAKENVEALKRLGG--TILHGVDVTSLK-FHADL 133 (282)
T ss_pred cccEEEecccchhhHHHHHHHhCccccceeeeeccchhhhhhhcccchHHHHHHHHHcCC--ceEecccceeEE-ecccc
Confidence 56799988888888888888743 345666553 11 12222 333343 234455555541 11122
Q ss_pred CCCcEeEEEEeCCCCCCCC-chhhhhhh------HHHHHHHHHhccc-CCeEEEEE-eCcHHHHHHHHHHHH-hcCCC
Q 021567 191 YPGKLILVSIQCPNPDFNR-PEHRWRMV------QRSLVEAVSDLLV-HDGKVFLQ-SDIEEVMLRMKQQFL-EYGKG 258 (311)
Q Consensus 191 ~~~s~D~V~i~fpdP~~k~-~h~krRl~------~~~~l~~i~rvLk-pGG~l~~~-tD~~~~~~~~~~~l~-~~g~~ 258 (311)
.-..+|.|+++||-.-..- ..+.++.+ ...|++.+...|+ ..|.+++. -+..+|-.|=++.+. +.|..
T Consensus 134 ~~~~~d~IiFNFPH~G~g~~~e~d~~~i~~~qkL~rgFle~akemL~~edGeI~itlk~t~P~~~W~ik~Lak~~gl~ 211 (282)
T KOG4174|consen 134 RLQRYDNIIFNFPHSGKGIKFEQDRNIIPLHQKLFRGFLESAKEMLKDEDGEIHITLKTTYPFNPWNIKFLAKEFGLT 211 (282)
T ss_pred cccccceEEEcCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccCCCCchhhhhHhhhhcccc
Confidence 3578999999998442111 12222222 2689999999999 78998874 234566777777664 44443
No 392
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=54.16 E-value=74 Score=29.61 Aligned_cols=97 Identities=12% Similarity=0.101 Sum_probs=53.5
Q ss_pred CCeEEEEeccc-cHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEE-ccccchhhhhhccCCCcEeEEEEeCC
Q 021567 126 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIA-TNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 126 ~~~vLDIGcGt-G~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~-~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
+..+|=.|+|. |..+..+|+...-..++.++.++.-.+.+.+.|.+.+--.. .+..+.+.... ....+|.++-...
T Consensus 164 g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~--~~~~~d~v~d~~g 241 (341)
T PRK05396 164 GEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAVNVAKEDLRDVMAELG--MTEGFDVGLEMSG 241 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHHHhc--CCCCCCEEEECCC
Confidence 34455467765 67778888875433688887666555555555543211111 11111111111 2345777653211
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
. ...+..+.+.|+++|.+...
T Consensus 242 ~--------------~~~~~~~~~~l~~~G~~v~~ 262 (341)
T PRK05396 242 A--------------PSAFRQMLDNMNHGGRIAML 262 (341)
T ss_pred C--------------HHHHHHHHHHHhcCCEEEEE
Confidence 1 25677888999999998875
No 393
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=54.06 E-value=54 Score=25.30 Aligned_cols=80 Identities=15% Similarity=0.161 Sum_probs=47.4
Q ss_pred EeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCch
Q 021567 132 IGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPE 211 (311)
Q Consensus 132 IGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h 211 (311)
+.||+|..+-.++++ ..+.++++|+ ++.+...+..+.- . ....+|.|.+. |.
T Consensus 4 ~~Cg~G~sTS~~~~k--------------i~~~~~~~~~-~~~v~~~~~~~~~-~----~~~~~Diil~~---Pq----- 55 (96)
T cd05564 4 LVCSAGMSTSILVKK--------------MKKAAEKRGI-DAEIEAVPESELE-E----YIDDADVVLLG---PQ----- 55 (96)
T ss_pred EEcCCCchHHHHHHH--------------HHHHHHHCCC-ceEEEEecHHHHH-H----hcCCCCEEEEC---hh-----
Confidence 679999887766654 3344556676 4788888877652 1 23457877654 22
Q ss_pred hhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHH
Q 021567 212 HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVM 245 (311)
Q Consensus 212 ~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~ 245 (311)
- ...++++.+.+.+.+.=+...|...|.
T Consensus 56 v------~~~~~~i~~~~~~~~~pv~~I~~~~Y~ 83 (96)
T cd05564 56 V------RYMLDEVKKKAAEYGIPVAVIDMMDYG 83 (96)
T ss_pred H------HHHHHHHHHHhccCCCcEEEcChHhcc
Confidence 1 134555665555555544446666664
No 394
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=53.11 E-value=41 Score=31.90 Aligned_cols=57 Identities=11% Similarity=0.152 Sum_probs=44.0
Q ss_pred CcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCC
Q 021567 193 GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG 258 (311)
Q Consensus 193 ~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~ 258 (311)
..+|.+.+..| |.+. ..+..|.++.+.|.|||.+++.-+.+.-.....+++++++..
T Consensus 36 ~~~d~~l~~~p----K~~~-----e~e~qLa~ll~~~~~g~~i~v~g~~~~g~~s~~k~l~~~~~~ 92 (300)
T COG2813 36 DDFDAVLLYWP----KHKA-----EAEFQLAQLLARLPPGGEIVVVGEKRDGVRSAEKMLEKYGGP 92 (300)
T ss_pred CCCCEEEEEcc----CchH-----HHHHHHHHHHhhCCCCCeEEEEecccchHHHHHHHHHHhcCc
Confidence 37899988843 3322 235678899999999999999988888888888888887654
No 395
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=52.88 E-value=1.3e+02 Score=27.88 Aligned_cols=94 Identities=12% Similarity=0.097 Sum_probs=55.3
Q ss_pred CeEEEEec--cccHHHHHHHhhCCCC-eEEEEchHHHHHHHHHH-cCCCcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 127 PLVVDIGS--GNGLFLLGMARKRKDL-NFLGLELVTHCRDSLQL-SGITNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 127 ~~vLDIGc--GtG~~~~~lA~~~p~~-~vvGiDi~~~a~~~a~~-~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
..||=.|. |.|..++++|+.. +. ++++++-++.-.+.+++ .|.+.+ +..+-.++.+.+....+..+|.++-..
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~-G~~~Vi~~~~s~~~~~~~~~~lGa~~v--i~~~~~~~~~~i~~~~~~gvd~vid~~ 232 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL-GCSRVVGICGSDEKCQLLKSELGFDAA--INYKTDNVAERLRELCPEGVDVYFDNV 232 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHhcCCcEE--EECCCCCHHHHHHHHCCCCceEEEECC
Confidence 56776774 6888899999876 55 79999877655555544 565432 221112221111111124578775321
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.. ..+.+..+.|+++|+++..
T Consensus 233 g~---------------~~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 233 GG---------------EISDTVISQMNENSHIILC 253 (345)
T ss_pred Cc---------------HHHHHHHHHhccCCEEEEE
Confidence 11 2357778899999998863
No 396
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=52.69 E-value=91 Score=30.93 Aligned_cols=93 Identities=18% Similarity=0.179 Sum_probs=52.7
Q ss_pred cccHHHHHHHhhC-CCCeEEEEchHHHHHHHHHHcCCC--------------cEEEEEccccchhhhhhccCCCcEeEEE
Q 021567 135 GNGLFLLGMARKR-KDLNFLGLELVTHCRDSLQLSGIT--------------NGYFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 135 GtG~~~~~lA~~~-p~~~vvGiDi~~~a~~~a~~~~~~--------------Nv~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
|.|..+..+|... ...+++|+|+.+...+.++ .|.. ++.+ ..+... -...|.++
T Consensus 13 GlGyvGlpmA~~la~~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~-t~~~~~---------~~~advvi 81 (425)
T PRK15182 13 GLGYVGLPLAVEFGKSRQVVGFDVNKKRILELK-NGVDVNLETTEEELREARYLKF-TSEIEK---------IKECNFYI 81 (425)
T ss_pred CcCcchHHHHHHHhcCCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeE-EeCHHH---------HcCCCEEE
Confidence 5677777776652 2468999999887777765 3321 1111 111110 12457888
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
+..|+|-..+.+..-+.+ ....+.+...|++|..++..+
T Consensus 82 i~Vptp~~~~~~~dl~~v-~~a~~~i~~~l~~g~lVI~~S 120 (425)
T PRK15182 82 ITVPTPINTYKQPDLTPL-IKASETVGTVLNRGDIVVYES 120 (425)
T ss_pred EEcCCCCCCCCCcchHHH-HHHHHHHHHhcCCCCEEEEec
Confidence 888888422211110111 233567888999988887753
No 397
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=51.95 E-value=73 Score=29.52 Aligned_cols=85 Identities=14% Similarity=0.109 Sum_probs=47.9
Q ss_pred CCeEEEEecc-ccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 126 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 126 ~~~vLDIGcG-tG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
+..+|=+||| .|.++.++|+...-..++++|.....++.+.... .+ |..+. ....+|.|+=.-..
T Consensus 145 ~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~-----~i--~~~~~-------~~~g~Dvvid~~G~ 210 (308)
T TIGR01202 145 VLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE-----VL--DPEKD-------PRRDYRAIYDASGD 210 (308)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc-----cc--Chhhc-------cCCCCCEEEECCCC
Confidence 4457767875 3666777888764445777887554444433211 11 11110 12246666433221
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
+..++.+.+.|+++|++.+.
T Consensus 211 --------------~~~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 211 --------------PSLIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred --------------HHHHHHHHHhhhcCcEEEEE
Confidence 25677788899999998864
No 398
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=51.02 E-value=1.2e+02 Score=23.93 Aligned_cols=82 Identities=18% Similarity=0.147 Sum_probs=49.1
Q ss_pred EeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCch
Q 021567 132 IGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPE 211 (311)
Q Consensus 132 IGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h 211 (311)
+.||+|..+--++++ ..+.++++|+ ++.+...+..++ .... ....+|.|.+. |.
T Consensus 6 lvCg~G~STSlla~k--------------~k~~~~e~gi-~~~i~a~~~~e~-~~~~--~~~~~DvIll~---PQ----- 59 (104)
T PRK09590 6 IICAAGMSSSMMAKK--------------TTEYLKEQGK-DIEVDAITATEG-EKAI--AAAEYDLYLVS---PQ----- 59 (104)
T ss_pred EECCCchHHHHHHHH--------------HHHHHHHCCC-ceEEEEecHHHH-HHhh--ccCCCCEEEEC---hH-----
Confidence 789999987766665 2334456666 477777777665 2211 13357877664 21
Q ss_pred hhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHH
Q 021567 212 HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVM 245 (311)
Q Consensus 212 ~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~ 245 (311)
- +-.++++...+.+.|.-+...|...|.
T Consensus 60 i------~~~~~~i~~~~~~~~ipv~~I~~~~Y~ 87 (104)
T PRK09590 60 T------KMYFKQFEEAGAKVGKPVVQIPPQAYI 87 (104)
T ss_pred H------HHHHHHHHHHhhhcCCCEEEeCHHHcC
Confidence 1 123556666666666555557777775
No 399
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=50.86 E-value=61 Score=28.19 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=17.8
Q ss_pred HHHHHHHHhcccCCeEEEEEe
Q 021567 219 RSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 219 ~~~l~~i~rvLkpGG~l~~~t 239 (311)
.+-+.++.++|||||.+++..
T Consensus 91 l~~m~~i~~vLK~GG~L~l~v 111 (177)
T PF03269_consen 91 LRAMAKIKCVLKPGGLLFLGV 111 (177)
T ss_pred HHHHHHHHHhhccCCeEEEEe
Confidence 366788999999999999963
No 400
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=50.71 E-value=24 Score=33.29 Aligned_cols=71 Identities=13% Similarity=0.243 Sum_probs=41.8
Q ss_pred EEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHH-HHHhcccCCeEEEEEeC----------c
Q 021567 173 GYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVE-AVSDLLVHDGKVFLQSD----------I 241 (311)
Q Consensus 173 v~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~-~i~rvLkpGG~l~~~tD----------~ 241 (311)
|+|+-.|....+..- +...+-||.|++.+.- -.+|. ++.++++|+|.|++.|- .
T Consensus 202 VhFLPld~~~~L~~K-~ky~~~Fd~ifvs~s~--------------vh~L~p~l~~~~a~~A~LvvEtaKfmvdLrKEq~ 266 (289)
T PF14740_consen 202 VHFLPLDSLEKLPHK-SKYQNFFDLIFVSCSM--------------VHFLKPELFQALAPDAVLVVETAKFMVDLRKEQL 266 (289)
T ss_pred EEEeCchHHHHHhhH-HhhcCCCCEEEEhhhh--------------HhhcchHHHHHhCCCCEEEEEcchhheeCCHHHH
Confidence 566655554443221 2245678888776321 12222 47789999999999761 2
Q ss_pred HHHHHHHHHHHHhcCCC
Q 021567 242 EEVMLRMKQQFLEYGKG 258 (311)
Q Consensus 242 ~~~~~~~~~~l~~~g~~ 258 (311)
..|.+.+.+.+.+.|+.
T Consensus 267 ~~F~~kv~eLA~~aG~~ 283 (289)
T PF14740_consen 267 QEFVKKVKELAKAAGFK 283 (289)
T ss_pred HHHHHHHHHHHHHCCCc
Confidence 34555666666777664
No 401
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=50.52 E-value=1.2e+02 Score=28.71 Aligned_cols=96 Identities=14% Similarity=0.086 Sum_probs=52.1
Q ss_pred CCeEEEEecc-ccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEcc---ccchhhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATN---ATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcG-tG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~D---a~~ll~~~~~~~~~s~D~V~i~ 201 (311)
+.+||=+|+| .|..+..+|+...-.+++++|.+..-++.+++.|.+.+--...+ ....+.... ...+|.++-.
T Consensus 185 g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~---~~g~d~vid~ 261 (365)
T cd08277 185 GSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFINPKDSDKPVSEVIREMT---GGGVDYSFEC 261 (365)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCcEeccccccchHHHHHHHHh---CCCCCEEEEC
Confidence 5566666764 34455667777633379999987666666666665432111111 111111111 2357766532
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCC-eEEEEE
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD-GKVFLQ 238 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpG-G~l~~~ 238 (311)
.-. ...+....+.|+++ |.+++.
T Consensus 262 -~g~-------------~~~~~~~~~~l~~~~G~~v~~ 285 (365)
T cd08277 262 -TGN-------------ADLMNEALESTKLGWGVSVVV 285 (365)
T ss_pred -CCC-------------hHHHHHHHHhcccCCCEEEEE
Confidence 210 25667778888885 888764
No 402
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=50.13 E-value=26 Score=33.29 Aligned_cols=31 Identities=26% Similarity=0.243 Sum_probs=23.2
Q ss_pred HHHHHHHHhcccCCeEEEEEeCcHHHHHHHHH
Q 021567 219 RSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQ 250 (311)
Q Consensus 219 ~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~ 250 (311)
+.+|..+.++|+|||++.+.|-+ .+-+.++.
T Consensus 224 ~~~L~~a~~~L~~gGRl~VIsFH-SLEDRiVK 254 (314)
T COG0275 224 EEALEAALDLLKPGGRLAVISFH-SLEDRIVK 254 (314)
T ss_pred HHHHHHHHHhhCCCcEEEEEEec-chHHHHHH
Confidence 68899999999999999987732 33344443
No 403
>PTZ00357 methyltransferase; Provisional
Probab=49.73 E-value=67 Score=34.31 Aligned_cols=98 Identities=15% Similarity=0.109 Sum_probs=59.9
Q ss_pred CeEEEEeccccHHHHHHHh---h-CCCCeEEEEchHHHH----HHHH-HHcCCC--------cEEEEEccccchhhhh--
Q 021567 127 PLVVDIGSGNGLFLLGMAR---K-RKDLNFLGLELVTHC----RDSL-QLSGIT--------NGYFIATNATSTFRSI-- 187 (311)
Q Consensus 127 ~~vLDIGcGtG~~~~~lA~---~-~p~~~vvGiDi~~~a----~~~a-~~~~~~--------Nv~f~~~Da~~ll~~~-- 187 (311)
-+|+=+|+|.|-+.....+ . .-..++++||-...+ +.+. ....-. .|+++..|....-...
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 3689999999998654432 2 336789999965221 1111 112222 3899999998872100
Q ss_pred ----hccCCCcEeEEEE----eCCCCCCCCchhhhhhhHHHHHHHHHhcccC----CeE
Q 021567 188 ----VASYPGKLILVSI----QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVH----DGK 234 (311)
Q Consensus 188 ----~~~~~~s~D~V~i----~fpdP~~k~~h~krRl~~~~~l~~i~rvLkp----GG~ 234 (311)
.|..-+.+|+|+. .|-|-. +.++-|..+.+.||+ +|.
T Consensus 782 ~s~~~P~~~gKaDIVVSELLGSFGDNE----------LSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSELLGSLGDNE----------LSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHhhhccccccc----------CCHHHHHHHHHhhhhhcccccc
Confidence 0101136888864 355542 457889999998887 776
No 404
>KOG2811 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.15 E-value=33 Score=33.54 Aligned_cols=57 Identities=12% Similarity=-0.045 Sum_probs=37.6
Q ss_pred CeEEEEeccccHHHHHHHhhCCCCeEEE---EchH--HHHHHHHHHc-CCCcEEEEEccccch
Q 021567 127 PLVVDIGSGNGLFLLGMARKRKDLNFLG---LELV--THCRDSLQLS-GITNGYFIATNATST 183 (311)
Q Consensus 127 ~~vLDIGcGtG~~~~~lA~~~p~~~vvG---iDi~--~~a~~~a~~~-~~~Nv~f~~~Da~~l 183 (311)
..++|.|||.|.++..++...++.+++- +|-. +.-..+..++ ...-+.=++.|++++
T Consensus 184 ~~~vEFGAGrg~Ls~~vs~~l~~~~~~l~vlvdR~s~R~K~D~k~~~~~~~vi~R~riDI~dL 246 (420)
T KOG2811|consen 184 SCFVEFGAGRGELSRWVSDCLQIQNVYLFVLVDRKSSRLKFDRKLRNKNSLVIKRIRIDIEDL 246 (420)
T ss_pred ceEEEecCCchHHHHHHHHHhccccEEEEEeecccchhhhhhhhhhccCcchhheeEeeHHhc
Confidence 6899999999999999999887776666 7732 2111121111 112355667788776
No 405
>PRK11579 putative oxidoreductase; Provisional
Probab=48.94 E-value=1.1e+02 Score=29.08 Aligned_cols=67 Identities=15% Similarity=0.128 Sum_probs=37.5
Q ss_pred eEEEEeccc-cH-HHHHHHhhCCCCeEEEE-chHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 128 LVVDIGSGN-GL-FLLGMARKRKDLNFLGL-ELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 128 ~vLDIGcGt-G~-~~~~lA~~~p~~~vvGi-Di~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
+|.=||||. |. +........|+..++++ |..... +++ ....+. ...|..++ + .+..+|.|++.-|+
T Consensus 6 rvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~---~~~-~~~~~~-~~~~~~el----l--~~~~vD~V~I~tp~ 74 (346)
T PRK11579 6 RVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATK---VKA-DWPTVT-VVSEPQHL----F--NDPNIDLIVIPTPN 74 (346)
T ss_pred eEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHH---HHh-hCCCCc-eeCCHHHH----h--cCCCCCEEEEcCCc
Confidence 577789986 43 33333445678888874 444321 211 111222 24565555 3 35679999988665
Q ss_pred C
Q 021567 205 P 205 (311)
Q Consensus 205 P 205 (311)
.
T Consensus 75 ~ 75 (346)
T PRK11579 75 D 75 (346)
T ss_pred H
Confidence 4
No 406
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=48.79 E-value=31 Score=24.91 Aligned_cols=41 Identities=10% Similarity=0.028 Sum_probs=34.4
Q ss_pred HHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceee
Q 021567 222 VEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 222 l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~ 262 (311)
++...+-|++|+.+.+.+|+....+.+.....+.|+..+..
T Consensus 16 ~kkal~~l~~G~~l~V~~d~~~a~~di~~~~~~~G~~~~~~ 56 (69)
T cd03420 16 LKKEIDKLQDGEQLEVKASDPGFARDAQAWCKSTGNTLISL 56 (69)
T ss_pred HHHHHHcCCCCCEEEEEECCccHHHHHHHHHHHcCCEEEEE
Confidence 45566778999999999999998899999999999986644
No 407
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=48.68 E-value=37 Score=24.51 Aligned_cols=41 Identities=12% Similarity=-0.013 Sum_probs=33.6
Q ss_pred HHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceee
Q 021567 222 VEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 222 l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~ 262 (311)
.++..+-|++|..+.+.+|+..-.+.+...+++.|+.....
T Consensus 16 ~kkal~~l~~G~~l~V~~d~~~s~~ni~~~~~~~g~~v~~~ 56 (69)
T cd03422 16 TLEALPSLKPGEILEVISDCPQSINNIPIDARNHGYKVLAI 56 (69)
T ss_pred HHHHHHcCCCCCEEEEEecCchHHHHHHHHHHHcCCEEEEE
Confidence 44556778999999999999988888889999999876543
No 408
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=48.22 E-value=1.3e+02 Score=28.39 Aligned_cols=97 Identities=16% Similarity=0.155 Sum_probs=52.1
Q ss_pred CCCeEEEEecc-ccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEc---cccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIAT---NATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcG-tG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~---Da~~ll~~~~~~~~~s~D~V~i 200 (311)
.+..||=+|+| .|..+.++|+...-.+++++|.+..-++.+++.|.+.+--... +....+.... .+.+|.++
T Consensus 187 ~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~~---~~~~d~vi- 262 (369)
T cd08301 187 KGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNPKDHDKPVQEVIAEMT---GGGVDYSF- 262 (369)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcccccchhHHHHHHHHh---CCCCCEEE-
Confidence 35666667754 2444566677653337999998766666666666532111111 1111111111 23567554
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCC-eEEEEE
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD-GKVFLQ 238 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpG-G~l~~~ 238 (311)
.+.-. ...+....+.+++| |++.+.
T Consensus 263 d~~G~-------------~~~~~~~~~~~~~~~g~~v~~ 288 (369)
T cd08301 263 ECTGN-------------IDAMISAFECVHDGWGVTVLL 288 (369)
T ss_pred ECCCC-------------hHHHHHHHHHhhcCCCEEEEE
Confidence 32211 25667777888996 888764
No 409
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=47.90 E-value=26 Score=29.88 Aligned_cols=110 Identities=11% Similarity=0.040 Sum_probs=57.7
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCC
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP 205 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP 205 (311)
+..||=+|.=.-.+...|.+.. ..+...... ......... ..|+.+..+-... ....+|.+++.
T Consensus 13 ~k~vL~~g~~~D~~~~~L~~~~--~~v~~~~~~-~~~~~~~~~-~~~~~~~f~~~~~--------~~~~~D~vvly---- 76 (155)
T PF08468_consen 13 GKSVLFAGDPQDDLPAQLPAIA--VSVHVFSYH-HWYALQKQA-QSNVQFHFGAELP--------ADQDFDTVVLY---- 76 (155)
T ss_dssp T-EEEEEE---SSHHHHS--SE--EEEEESBHH-HHHHHHHHH-GGGEEE-SS--HH--------HHTT-SEEEEE----
T ss_pred CCeEEEEcCCchhhHHHhhhcC--CEEEEEEch-HHHHHhHhc-ccCceEeeeccCC--------cccCCCEEEEE----
Confidence 4668888887778888777542 244444321 111111111 2366665332111 13568999988
Q ss_pred CCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcC
Q 021567 206 DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG 256 (311)
Q Consensus 206 ~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g 256 (311)
|||.+.. -.-.|..+...|++||.+++.-+++.=.+-+..++...+
T Consensus 77 ~PKaK~e-----~~~lL~~l~~~L~~g~~i~vVGEnk~GIkSa~K~L~~~~ 122 (155)
T PF08468_consen 77 WPKAKAE-----AQYLLANLLSHLPPGTEIFVVGENKGGIKSAEKQLAPYG 122 (155)
T ss_dssp --SSHHH-----HHHHHHHHHTTS-TT-EEEEEEEGGGTGGGHHHHHTTTS
T ss_pred ccCcHHH-----HHHHHHHHHHhCCCCCEEEEEecCcccHHHHHHHHHhhC
Confidence 4455432 246788999999999999998777655556666666664
No 410
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=47.77 E-value=35 Score=34.43 Aligned_cols=91 Identities=14% Similarity=0.156 Sum_probs=55.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEE------EEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFL------GLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILV 198 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vv------GiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V 198 (311)
.+.+|+=||||+=..+.++--+..+.+++ +||....+.++|.+.|.. ..+..+. . ..-|.|
T Consensus 35 kgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~-----v~~~~Ea----~----~~ADvV 101 (487)
T PRK05225 35 KGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFK-----VGTYEEL----I----PQADLV 101 (487)
T ss_pred CCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCc-----cCCHHHH----H----HhCCEE
Confidence 35789999998744433222222233444 333334566666666542 2333333 2 356888
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
.+..||-- | ..+.+++...||||..|.|+.
T Consensus 102 viLlPDt~----q-------~~v~~~i~p~LK~Ga~L~fsH 131 (487)
T PRK05225 102 INLTPDKQ----H-------SDVVRAVQPLMKQGAALGYSH 131 (487)
T ss_pred EEcCChHH----H-------HHHHHHHHhhCCCCCEEEecC
Confidence 88878751 1 356689999999999999964
No 411
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=47.28 E-value=88 Score=24.17 Aligned_cols=82 Identities=9% Similarity=0.011 Sum_probs=46.8
Q ss_pred eEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCC
Q 021567 128 LVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDF 207 (311)
Q Consensus 128 ~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~ 207 (311)
+|| +-||+|..+-.++.+ ..+.++++|+ ++.+...+..++ .. ....+|.|.+. |.
T Consensus 5 ~IL-l~C~~G~sSS~l~~k--------------~~~~~~~~gi-~~~v~a~~~~~~-~~----~~~~~Dvill~---pq- 59 (95)
T TIGR00853 5 NIL-LLCAAGMSTSLLVNK--------------MNKAAEEYGV-PVKIAAGSYGAA-GE----KLDDADVVLLA---PQ- 59 (95)
T ss_pred EEE-EECCCchhHHHHHHH--------------HHHHHHHCCC-cEEEEEecHHHH-Hh----hcCCCCEEEEC---ch-
Confidence 344 889999776666644 3344556676 477778777665 21 12356877654 21
Q ss_pred CCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHH
Q 021567 208 NRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV 244 (311)
Q Consensus 208 k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~ 244 (311)
- ...++++...+.+-|.=+...|...|
T Consensus 60 ----i------~~~~~~i~~~~~~~~ipv~~I~~~~Y 86 (95)
T TIGR00853 60 ----V------AYMLPDLKKETDKKGIPVEVINGAQY 86 (95)
T ss_pred ----H------HHHHHHHHHHhhhcCCCEEEeChhhc
Confidence 1 13355556555554444444555554
No 412
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=47.27 E-value=1.6e+02 Score=28.00 Aligned_cols=95 Identities=14% Similarity=0.142 Sum_probs=52.9
Q ss_pred CCCeEEEEecc-ccHHHHHHHhhCCCC-eEEEEchHHHHHHHHHHcCCCcEEEEEcc----ccchhhhhhccCCCcEeEE
Q 021567 125 AQPLVVDIGSG-NGLFLLGMARKRKDL-NFLGLELVTHCRDSLQLSGITNGYFIATN----ATSTFRSIVASYPGKLILV 198 (311)
Q Consensus 125 ~~~~vLDIGcG-tG~~~~~lA~~~p~~-~vvGiDi~~~a~~~a~~~~~~Nv~f~~~D----a~~ll~~~~~~~~~s~D~V 198 (311)
.+..||=+|+| .|..+..+|+.. +. .++++|.+..-++.+++.|.+.+ +-..+ ....+... .++.+|.|
T Consensus 186 ~g~~VlV~G~G~vG~~a~~~ak~~-G~~~vi~~~~~~~~~~~~~~lGa~~~-i~~~~~~~~~~~~v~~~---~~~g~d~v 260 (368)
T cd08300 186 PGSTVAVFGLGAVGLAVIQGAKAA-GASRIIGIDINPDKFELAKKFGATDC-VNPKDHDKPIQQVLVEM---TDGGVDYT 260 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHcCCCEE-EcccccchHHHHHHHHH---hCCCCcEE
Confidence 35667667764 344556667765 45 79999987766666666665322 11111 11111111 12357766
Q ss_pred EEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCC-eEEEEE
Q 021567 199 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD-GKVFLQ 238 (311)
Q Consensus 199 ~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpG-G~l~~~ 238 (311)
+=.-.. ...+....+.|+++ |++++.
T Consensus 261 id~~g~--------------~~~~~~a~~~l~~~~G~~v~~ 287 (368)
T cd08300 261 FECIGN--------------VKVMRAALEACHKGWGTSVII 287 (368)
T ss_pred EECCCC--------------hHHHHHHHHhhccCCCeEEEE
Confidence 432111 24667778889887 888764
No 413
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=47.02 E-value=71 Score=30.82 Aligned_cols=89 Identities=12% Similarity=0.083 Sum_probs=52.6
Q ss_pred CCeEEEEeccccHHHHHHHhh--CCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 126 QPLVVDIGSGNGLFLLGMARK--RKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~--~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
+.+|-=||+| ..+..+|++ .-+.++++.+-.....+.+...|. .. .+..++ . ..-|.|.++.|
T Consensus 16 gKtVGIIG~G--sIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~---~v--~sl~Ea----a----k~ADVV~llLP 80 (335)
T PRK13403 16 GKTVAVIGYG--SQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGF---EV--MSVSEA----V----RTAQVVQMLLP 80 (335)
T ss_pred cCEEEEEeEc--HHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCC---EE--CCHHHH----H----hcCCEEEEeCC
Confidence 4567777775 455555544 225688777643444444444443 22 244443 2 24599999999
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
|+- . +. -+.+++...|+||..|.|+.
T Consensus 81 d~~-----t-~~----V~~~eil~~MK~GaiL~f~h 106 (335)
T PRK13403 81 DEQ-----Q-AH----VYKAEVEENLREGQMLLFSH 106 (335)
T ss_pred ChH-----H-HH----HHHHHHHhcCCCCCEEEECC
Confidence 862 1 11 22356888899999999864
No 414
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=46.62 E-value=34 Score=24.14 Aligned_cols=39 Identities=13% Similarity=-0.023 Sum_probs=31.1
Q ss_pred HHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceee
Q 021567 224 AVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 224 ~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~ 262 (311)
+..+-|.+|..+.+.+|+..-...+.+.+.+.|+.....
T Consensus 18 ~~l~~l~~g~~l~v~~d~~~~~~~i~~~~~~~g~~~~~~ 56 (69)
T cd00291 18 KALEKLKSGEVLEVLLDDPGAVEDIPAWAKETGHEVLEV 56 (69)
T ss_pred HHHhcCCCCCEEEEEecCCcHHHHHHHHHHHcCCEEEEE
Confidence 344558999999999999887888888899999876543
No 415
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=46.02 E-value=1.7e+02 Score=27.54 Aligned_cols=97 Identities=12% Similarity=0.065 Sum_probs=53.7
Q ss_pred CCeEEEEecc-ccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhcc-CCCcEeEEEEeCC
Q 021567 126 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVAS-YPGKLILVSIQCP 203 (311)
Q Consensus 126 ~~~vLDIGcG-tG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~-~~~s~D~V~i~fp 203 (311)
+..+|=.|+| .|..+..+|+...-..+++++-++.-.+.++..+.+ .++..+-.+....+... ....+|.+.- +.
T Consensus 183 g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~g~~--~vv~~~~~~~~~~l~~~~~~~~vd~vld-~~ 259 (363)
T cd08279 183 GDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGAT--HTVNASEDDAVEAVRDLTDGRGADYAFE-AV 259 (363)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHhCCe--EEeCCCCccHHHHHHHHcCCCCCCEEEE-cC
Confidence 4566666875 577778888876433488888655544555445542 22222211211111111 2345786643 22
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.. ...+..+.+.|+++|++...
T Consensus 260 ~~-------------~~~~~~~~~~l~~~G~~v~~ 281 (363)
T cd08279 260 GR-------------AATIRQALAMTRKGGTAVVV 281 (363)
T ss_pred CC-------------hHHHHHHHHHhhcCCeEEEE
Confidence 11 25677888999999998754
No 416
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=45.66 E-value=1.9e+02 Score=26.57 Aligned_cols=107 Identities=9% Similarity=0.045 Sum_probs=60.9
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHH---HHHHHHHHcC---CCcEEEEEccccchhhhhhc---cCCCcEe
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT---HCRDSLQLSG---ITNGYFIATNATSTFRSIVA---SYPGKLI 196 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~---~a~~~a~~~~---~~Nv~f~~~Da~~ll~~~~~---~~~~s~D 196 (311)
...|+.+|||-=.-..++... ++..++=+|.-+ .-.+.+.+.+ ..+.+++.+|+..-+.+.+. +.+..--
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~pt 160 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWP-DGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPT 160 (260)
T ss_pred CcEEEEeCCccccHHHhcCCC-CCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCe
Confidence 457999999998888887532 257888888632 1122223222 35789999998632222121 1111222
Q ss_pred EEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 197 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 197 ~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
.++.-..-+.+... ....+++.+.+...||+.+.+..
T Consensus 161 l~i~EGvl~YL~~~------~v~~ll~~i~~~~~~gs~l~~d~ 197 (260)
T TIGR00027 161 AWLWEGLLMYLTEE------AVDALLAFIAELSAPGSRLAFDY 197 (260)
T ss_pred eeeecchhhcCCHH------HHHHHHHHHHHhCCCCcEEEEEe
Confidence 22222221221111 12478999999888999999864
No 417
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=45.34 E-value=33 Score=33.10 Aligned_cols=54 Identities=13% Similarity=0.264 Sum_probs=35.5
Q ss_pred EEEEeccccHHHHHHHhhCCCCeEEEEchH----HHHHHHHHHcCCC-cEEEEEccccc
Q 021567 129 VVDIGSGNGLFLLGMARKRKDLNFLGLELV----THCRDSLQLSGIT-NGYFIATNATS 182 (311)
Q Consensus 129 vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~----~~a~~~a~~~~~~-Nv~f~~~Da~~ 182 (311)
=+|||+|+-++=-.+-.+.-+..+++.|+. +.|..++.+++++ .+..++.+...
T Consensus 106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~k 164 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQK 164 (419)
T ss_pred eeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchh
Confidence 489999888776666444346899999974 4555566556553 46666665533
No 418
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=45.27 E-value=44 Score=32.88 Aligned_cols=60 Identities=17% Similarity=0.133 Sum_probs=46.9
Q ss_pred CCCCeEEEEeccccHHHHHHHhh-CCCCeEEEEchHH----HHHHHHHHcCCCcEEEEEccccch
Q 021567 124 PAQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVT----HCRDSLQLSGITNGYFIATNATST 183 (311)
Q Consensus 124 ~~~~~vLDIGcGtG~~~~~lA~~-~p~~~vvGiDi~~----~a~~~a~~~~~~Nv~f~~~Da~~l 183 (311)
++++.|+|++|..|.-+..+|.- .+...+.|.|... ..++.+...|.+++....+|....
T Consensus 212 ~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t 276 (413)
T KOG2360|consen 212 RPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNT 276 (413)
T ss_pred CCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCC
Confidence 35789999999999999999886 4477999999743 344455567788888888888774
No 419
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=45.01 E-value=95 Score=28.70 Aligned_cols=96 Identities=13% Similarity=0.122 Sum_probs=51.4
Q ss_pred CCeEEEEecc-ccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhc-cCCCcEeEEEEeCC
Q 021567 126 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVA-SYPGKLILVSIQCP 203 (311)
Q Consensus 126 ~~~vLDIGcG-tG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~-~~~~s~D~V~i~fp 203 (311)
+..+|=.|+| .|..+..+|+.....++++++-+..-.+.+++.+.+. ++..+-. ....+-. .....+|.++-...
T Consensus 168 ~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~--~~~~~~~-~~~~i~~~~~~~~~dvvld~~g 244 (340)
T cd05284 168 GSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAERLGADH--VLNASDD-VVEEVRELTGGRGADAVIDFVG 244 (340)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHhCCcE--EEcCCcc-HHHHHHHHhCCCCCCEEEEcCC
Confidence 4455555643 4444556676653367888886655555555555432 2222211 1111101 02345787764322
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
. ...+++..+.|+++|++...
T Consensus 245 ~--------------~~~~~~~~~~l~~~g~~i~~ 265 (340)
T cd05284 245 S--------------DETLALAAKLLAKGGRYVIV 265 (340)
T ss_pred C--------------HHHHHHHHHHhhcCCEEEEE
Confidence 1 25677888999999998854
No 420
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=44.66 E-value=1.1e+02 Score=30.94 Aligned_cols=110 Identities=18% Similarity=0.184 Sum_probs=58.9
Q ss_pred CCeEEEEeccccHHHHHHHhhC----CCCeEEEEchHH----HHHHHHHHcCC--CcEEEEEccccchhhhhhccCCCcE
Q 021567 126 QPLVVDIGSGNGLFLLGMARKR----KDLNFLGLELVT----HCRDSLQLSGI--TNGYFIATNATSTFRSIVASYPGKL 195 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~----p~~~vvGiDi~~----~a~~~a~~~~~--~Nv~f~~~Da~~ll~~~~~~~~~s~ 195 (311)
...+.|..||+|.++....+.. ....++|-|... .+.....-++. ++.....+|...-. ... ....+
T Consensus 218 ~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~-d~~--~~~~~ 294 (501)
T TIGR00497 218 VDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTK-EWE--NENGF 294 (501)
T ss_pred CCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCc-ccc--ccccC
Confidence 3579999999999998765432 124688998533 22222222332 23333344433220 111 23457
Q ss_pred eEEEEeCCCC--CCCCc-----hhhh----------hhhHHHHHHHHHhcccCCeEEEEE
Q 021567 196 ILVSIQCPNP--DFNRP-----EHRW----------RMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 196 D~V~i~fpdP--~~k~~-----h~kr----------Rl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
|.|..+-|.. |.... ...+ .-....|+..+..+|++||...+.
T Consensus 295 D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI 354 (501)
T TIGR00497 295 EVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIV 354 (501)
T ss_pred CEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEE
Confidence 8877764322 21100 0000 012358889999999999975543
No 421
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=44.46 E-value=34 Score=29.78 Aligned_cols=62 Identities=18% Similarity=0.185 Sum_probs=32.9
Q ss_pred cEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCc-HHHHH-HHHHHHHhcC
Q 021567 194 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-EEVML-RMKQQFLEYG 256 (311)
Q Consensus 194 s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~-~~~~~-~~~~~l~~~g 256 (311)
..|.+++..|.|.-.+....-+.+ ...++.+...|++|-.+++.+-. ....+ .....+++.+
T Consensus 76 ~adv~~I~VpTP~~~~~~~Dls~v-~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~ 139 (185)
T PF03721_consen 76 DADVVFICVPTPSDEDGSPDLSYV-ESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRS 139 (185)
T ss_dssp H-SEEEE----EBETTTSBETHHH-HHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHC
T ss_pred ccceEEEecCCCccccCCccHHHH-HHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhc
Confidence 467888877777533221111111 57788999999998888886432 33444 3445555544
No 422
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=44.10 E-value=1.6e+02 Score=32.91 Aligned_cols=77 Identities=14% Similarity=0.115 Sum_probs=46.2
Q ss_pred CCeEEEEeccc-cHHHHHHHhhCCCCe-------------EEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccC
Q 021567 126 QPLVVDIGSGN-GLFLLGMARKRKDLN-------------FLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASY 191 (311)
Q Consensus 126 ~~~vLDIGcGt-G~~~~~lA~~~p~~~-------------vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~ 191 (311)
..+|+=||||. |........+.|+.. ++..|......+++.+ +.+++..+..|+.+. +.+...
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~-~~~~~~~v~lDv~D~-e~L~~~- 645 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVE-GIENAEAVQLDVSDS-ESLLKY- 645 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHH-hcCCCceEEeecCCH-HHHHHh-
Confidence 56899999984 666665555556654 7778876544444432 234666677766554 322210
Q ss_pred CCcEeEEEEeCCCC
Q 021567 192 PGKLILVSIQCPNP 205 (311)
Q Consensus 192 ~~s~D~V~i~fpdP 205 (311)
-..+|.|++.-|..
T Consensus 646 v~~~DaVIsalP~~ 659 (1042)
T PLN02819 646 VSQVDVVISLLPAS 659 (1042)
T ss_pred hcCCCEEEECCCch
Confidence 02389988876654
No 423
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=43.99 E-value=1.5e+02 Score=27.59 Aligned_cols=107 Identities=15% Similarity=0.125 Sum_probs=57.0
Q ss_pred EEEeccccHHHHHHHhh--CCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCC
Q 021567 130 VDIGSGNGLFLLGMARK--RKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDF 207 (311)
Q Consensus 130 LDIGcGtG~~~~~lA~~--~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~ 207 (311)
-=||+| ..+..||.. ..+..+++.|......+.+.+.+... ..+..++.. .....|.|++..|+..
T Consensus 4 g~IGlG--~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~----~~s~~~~~~-----~~~~~dvIi~~vp~~~- 71 (298)
T TIGR00872 4 GLIGLG--RMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTG----VANLRELSQ-----RLSAPRVVWVMVPHGI- 71 (298)
T ss_pred EEEcch--HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcc----cCCHHHHHh-----hcCCCCEEEEEcCchH-
Confidence 346665 444444443 23568899998776666665544211 123323211 1123578877766541
Q ss_pred CCchhhhhhhHHHHHHHHHhcccCCeEEEEEeC-cHHHHHHHHHHHHhcCCC
Q 021567 208 NRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD-IEEVMLRMKQQFLEYGKG 258 (311)
Q Consensus 208 k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD-~~~~~~~~~~~l~~~g~~ 258 (311)
.+.+++++...|++|-.++-.+. ...-.....+.+.+.|..
T Consensus 72 ----------~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~ 113 (298)
T TIGR00872 72 ----------VDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH 113 (298)
T ss_pred ----------HHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCe
Confidence 14677888888988865543222 222333444556666643
No 424
>PRK11018 hypothetical protein; Provisional
Probab=43.95 E-value=46 Score=24.72 Aligned_cols=58 Identities=17% Similarity=0.133 Sum_probs=44.3
Q ss_pred CCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceee
Q 021567 192 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 192 ~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~ 262 (311)
+..+|..-..||-|. --.+...+-|++|..|.+.+|+..-.+.+...+++.|+.....
T Consensus 8 ~~~lD~rG~~CP~Pv-------------l~~kk~l~~l~~G~~L~V~~d~~~a~~di~~~~~~~G~~v~~~ 65 (78)
T PRK11018 8 DYRLDMVGEPCPYPA-------------VATLEALPQLKKGEILEVVSDCPQSINNIPLDARNHGYTVLDI 65 (78)
T ss_pred CeeEECCCCcCCHHH-------------HHHHHHHHhCCCCCEEEEEeCCccHHHHHHHHHHHcCCEEEEE
Confidence 456787777788774 2234445778999999999999888888888889999876543
No 425
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=43.88 E-value=1.8e+02 Score=26.06 Aligned_cols=96 Identities=15% Similarity=0.104 Sum_probs=52.5
Q ss_pred CCCeEEEEec--cccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhcc-CCCcEeEEEEe
Q 021567 125 AQPLVVDIGS--GNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVAS-YPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGc--GtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~-~~~s~D~V~i~ 201 (311)
.+..+|-.|| +.|..+..+|+.. +..+++++.+....+.+...+..+ .+..+-.+....+... ....+|.++-.
T Consensus 139 ~~~~vli~g~~~~~g~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~i~~~~~~~~~d~v~~~ 215 (323)
T cd08241 139 PGETVLVLGAAGGVGLAAVQLAKAL-GARVIAAASSEEKLALARALGADH--VIDYRDPDLRERVKALTGGRGVDVVYDP 215 (323)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHcCCce--eeecCCccHHHHHHHHcCCCCcEEEEEC
Confidence 3578888998 4666677777764 567888887655555554445422 1121111111111111 23357776532
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.. ...+..+.+.++++|.+...
T Consensus 216 ~g---------------~~~~~~~~~~~~~~g~~v~~ 237 (323)
T cd08241 216 VG---------------GDVFEASLRSLAWGGRLLVI 237 (323)
T ss_pred cc---------------HHHHHHHHHhhccCCEEEEE
Confidence 11 13455667888999987753
No 426
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=43.22 E-value=53 Score=31.61 Aligned_cols=109 Identities=12% Similarity=0.073 Sum_probs=63.7
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHH-HHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH-CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~-a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
+..||=+|--...+...|+. ...++.--+.... .... ..+ .++.|- .++... ....+|.|.+..|
T Consensus 20 ~~~~l~~~~~~d~~~~~l~~--~~~~~~~~~~~~~~~~~~--~~~-~~~~f~-~~~~~~-------~~~~~d~~~~~~p- 85 (342)
T PRK09489 20 QRRVLFAGDLQDDLPAQLDA--ASVRVHTQQFHHWQVLSR--QMG-DNARFS-LVATAE-------DVADCDTLIYYWP- 85 (342)
T ss_pred CCcEEEEcCcchhhHHhhhc--cceEEehhhhHHHHHHHh--hcC-CceEec-cccCCc-------cCCCCCEEEEECC-
Confidence 35688888888888877762 1233443333221 1111 112 234432 111111 2357899988844
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcC
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG 256 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g 256 (311)
|.+. ..+-.|..+.+.|+|||.+++.-++..=.+.+.+.++..+
T Consensus 86 ---k~k~-----~~~~~l~~~~~~l~~g~~i~~~G~~~~g~~s~~k~~~~~~ 129 (342)
T PRK09489 86 ---KNKQ-----EAQFQLMNLLSLLPVGTDIFVVGENRSGVRSAEKMLADYA 129 (342)
T ss_pred ---CCHH-----HHHHHHHHHHHhCCCCCEEEEEEeccccHHHHHHHHHHhc
Confidence 4332 2257788999999999999998777666666666666653
No 427
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=43.04 E-value=1.8e+02 Score=28.17 Aligned_cols=106 Identities=9% Similarity=-0.026 Sum_probs=54.6
Q ss_pred CCeEEEEecc-ccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEc---cccchhhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIAT---NATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcG-tG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~---Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
+..||=.|+| .|..++.+|+..--..++.+|.+..-++.+++.|.+ .+... +..+.+.... ....+|.++-.
T Consensus 186 g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga~--~v~~~~~~~~~~~v~~~~--~~~g~Dvvid~ 261 (393)
T TIGR02819 186 GSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGCE--TVDLSKDATLPEQIEQIL--GEPEVDCAVDC 261 (393)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCCe--EEecCCcccHHHHHHHHc--CCCCCcEEEEC
Confidence 3444336664 344556677765333466778776667777777763 22221 1211112111 12347776532
Q ss_pred CCCC---CCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 202 CPNP---DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 202 fpdP---~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
--.| +..++ +.+ -....+++..+.+++||.+.+.
T Consensus 262 ~G~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~G~i~~~ 298 (393)
T TIGR02819 262 VGFEARGHGHDG--KKE-APATVLNSLMEVTRVGGAIGIP 298 (393)
T ss_pred CCCccccccccc--ccc-chHHHHHHHHHHhhCCCEEEEe
Confidence 2222 11111 000 1124688888999999999874
No 428
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=42.88 E-value=1.5e+02 Score=27.68 Aligned_cols=96 Identities=14% Similarity=0.070 Sum_probs=51.2
Q ss_pred CCeEEEEecc-ccHHHHHHHhhCCCC-eEEEEchHHHHHHHHHHcCCCcE-EEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 126 QPLVVDIGSG-NGLFLLGMARKRKDL-NFLGLELVTHCRDSLQLSGITNG-YFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 126 ~~~vLDIGcG-tG~~~~~lA~~~p~~-~vvGiDi~~~a~~~a~~~~~~Nv-~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
+..+|=.|+| .|..+.++|+.. +. .+++++.+..-.+.+.+.|.+.+ .....+..+-+.... ....+|.++-..
T Consensus 173 g~~vlI~g~g~vG~~a~q~a~~~-G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~l~~~~--~~~~~d~vid~~ 249 (351)
T cd08233 173 GDTALVLGAGPIGLLTILALKAA-GASKIIVSEPSEARRELAEELGATIVLDPTEVDVVAEVRKLT--GGGGVDVSFDCA 249 (351)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhCCCEEECCCccCHHHHHHHHh--CCCCCCEEEECC
Confidence 4555555653 355566677765 45 78888876555555555554321 111111111111111 223478775432
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.. ...++...+.|+++|.+...
T Consensus 250 g~--------------~~~~~~~~~~l~~~G~~v~~ 271 (351)
T cd08233 250 GV--------------QATLDTAIDALRPRGTAVNV 271 (351)
T ss_pred CC--------------HHHHHHHHHhccCCCEEEEE
Confidence 11 24567788899999998764
No 429
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=42.33 E-value=1.3e+02 Score=24.93 Aligned_cols=88 Identities=10% Similarity=0.203 Sum_probs=44.2
Q ss_pred CCeEEEEeccccHH-HHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 126 QPLVVDIGSGNGLF-LLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 126 ~~~vLDIGcGtG~~-~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
..+++|||-|.=.- +..|+++ +..++++|+.+. .+. ..+.++..|+.+--.++. ...|+|+..=|.
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~---~a~----~g~~~v~DDif~P~l~iY----~~a~lIYSiRPP 80 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKER--GFDVIATDINPR---KAP----EGVNFVVDDIFNPNLEIY----EGADLIYSIRPP 80 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S-----------STTEE---SSS--HHHH----TTEEEEEEES--
T ss_pred CCcEEEECcCCCHHHHHHHHHc--CCcEEEEECccc---ccc----cCcceeeecccCCCHHHh----cCCcEEEEeCCC
Confidence 45899999997654 4455555 589999999765 222 346688888776321222 357999988666
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
|. +++.++ ++++.+ |.-+++.+
T Consensus 81 ~E----------l~~~il-~lA~~v--~adlii~p 102 (127)
T PF03686_consen 81 PE----------LQPPIL-ELAKKV--GADLIIRP 102 (127)
T ss_dssp TT----------SHHHHH-HHHHHH--T-EEEEE-
T ss_pred hH----------HhHHHH-HHHHHh--CCCEEEEC
Confidence 53 223444 344433 77777765
No 430
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=42.29 E-value=20 Score=33.71 Aligned_cols=34 Identities=15% Similarity=0.090 Sum_probs=25.3
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHH
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT 159 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~ 159 (311)
.+.+|||+|||.|--.+...... ...+...|.+.
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~-~~~~~fqD~na 149 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKG-AVSVHFQDFNA 149 (282)
T ss_pred cCceeEecCCcccccchhhhhhc-cceeeeEecch
Confidence 46899999999999888887663 25566666543
No 431
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=42.22 E-value=59 Score=31.07 Aligned_cols=62 Identities=8% Similarity=0.030 Sum_probs=47.6
Q ss_pred CCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 169 GITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 169 ~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
++..|.++++|..+++.. .+.+.+|.+++.=...|..+.+- .+++.+|.+-+.+|..++|.|
T Consensus 305 n~~RV~ihha~~iE~l~~---k~ag~Vdr~iLlDaqdwmtd~ql------n~lws~isrta~~gA~VifRt 366 (414)
T COG5379 305 NLRRVAIHHADIIELLAG---KPAGNVDRYILLDAQDWMTDGQL------NSLWSEISRTAEAGARVIFRT 366 (414)
T ss_pred hhhheeeecccHHHHhcc---CCCCCcceEEEecchhhcccchH------HHHHHHHhhccCCCcEEEEec
Confidence 355699999999988642 24689999987755556544322 589999999999999999986
No 432
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=41.95 E-value=2.1e+02 Score=28.84 Aligned_cols=123 Identities=12% Similarity=0.106 Sum_probs=63.5
Q ss_pred EEEEeccccHHHHH--HHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhh-----h-hcc----CCCcEe
Q 021567 129 VVDIGSGNGLFLLG--MARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRS-----I-VAS----YPGKLI 196 (311)
Q Consensus 129 vLDIGcGtG~~~~~--lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~-----~-~~~----~~~s~D 196 (311)
|.=||+|......+ ||++.++.+|+|+|..+.-.+.+++.+. .+..-+..+++.. + +.. .-...|
T Consensus 4 I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~---~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~ad 80 (473)
T PLN02353 4 ICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQL---PIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEAD 80 (473)
T ss_pred EEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCC---ccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCC
Confidence 55567776655444 4554446789999987665555543321 1112222222100 0 000 012357
Q ss_pred EEEEeCCCCCCCCc---hhhhhhhH-HHHHHHHHhcccCCeEEEEEeCc-HHHHHHHHHHHHh
Q 021567 197 LVSIQCPNPDFNRP---EHRWRMVQ-RSLVEAVSDLLVHDGKVFLQSDI-EEVMLRMKQQFLE 254 (311)
Q Consensus 197 ~V~i~fpdP~~k~~---h~krRl~~-~~~l~~i~rvLkpGG~l~~~tD~-~~~~~~~~~~l~~ 254 (311)
.+++..|.|-..+. ++.-.+.. ....+++.+.|++|-.++++|-. ....+.+...+.+
T Consensus 81 vi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~ 143 (473)
T PLN02353 81 IVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTH 143 (473)
T ss_pred EEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHh
Confidence 77777777742211 00101111 57788899999988887776432 2334555555554
No 433
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=41.70 E-value=18 Score=36.09 Aligned_cols=59 Identities=20% Similarity=0.231 Sum_probs=48.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHc----CC--CcEEEEEccccchhh
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS----GI--TNGYFIATNATSTFR 185 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~----~~--~Nv~f~~~Da~~ll~ 185 (311)
.+..|.|+-||-|-+.+.++++ ++.+++-|+...+.+.++.+ .+ .+++.+..||.++++
T Consensus 249 ~gevv~D~FaGvGPfa~Pa~kK--~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr 313 (495)
T KOG2078|consen 249 PGEVVCDVFAGVGPFALPAAKK--GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLR 313 (495)
T ss_pred CcchhhhhhcCcCccccchhhc--CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHhh
Confidence 4789999999999999999988 58999999987777776542 22 358999999998873
No 434
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=41.19 E-value=1.8e+02 Score=28.45 Aligned_cols=111 Identities=13% Similarity=0.056 Sum_probs=56.0
Q ss_pred cccHHHHHHHhhC-CCCeEEEEchHHHHHHHHHHcCCC-------------cEEEEE-ccccchhhhhhccCCCcEeEEE
Q 021567 135 GNGLFLLGMARKR-KDLNFLGLELVTHCRDSLQLSGIT-------------NGYFIA-TNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 135 GtG~~~~~lA~~~-p~~~vvGiDi~~~a~~~a~~~~~~-------------Nv~f~~-~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
|.|..+..+|... .+.+|+|+|+++...+.+.+...+ +..+.. .|..+ .-...|.|+
T Consensus 7 GlGyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~--------~~~~ad~vi 78 (388)
T PRK15057 7 GTGYVGLSNGLLIAQNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNE--------AYRDADYVI 78 (388)
T ss_pred CCCHHHHHHHHHHHhCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhh--------hhcCCCEEE
Confidence 5555554444321 146899999977666665431110 111111 11100 113468888
Q ss_pred EeCCCCCCCCc-hhhhhhhHHHHHHHHHhcccCCeEEEEE-eCcHHHHHHHHHHHHhc
Q 021567 200 IQCPNPDFNRP-EHRWRMVQRSLVEAVSDLLVHDGKVFLQ-SDIEEVMLRMKQQFLEY 255 (311)
Q Consensus 200 i~fpdP~~k~~-h~krRl~~~~~l~~i~rvLkpGG~l~~~-tD~~~~~~~~~~~l~~~ 255 (311)
+..|.|...+. ...-..+ .+.++.+.+ +++|..++.. |-.....+.+.+.+.+.
T Consensus 79 i~Vpt~~~~k~~~~dl~~v-~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~ 134 (388)
T PRK15057 79 IATPTDYDPKTNYFNTSSV-ESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTE 134 (388)
T ss_pred EeCCCCCccCCCCcChHHH-HHHHHHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcC
Confidence 88888842211 0000011 345577777 6888777654 43445566666665543
No 435
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=40.73 E-value=1.7e+02 Score=27.53 Aligned_cols=97 Identities=12% Similarity=0.106 Sum_probs=51.9
Q ss_pred CCeEEEEecc-ccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhc-cCCCcEeEEEEeCC
Q 021567 126 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVA-SYPGKLILVSIQCP 203 (311)
Q Consensus 126 ~~~vLDIGcG-tG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~-~~~~s~D~V~i~fp 203 (311)
+..+|=.|+| .|..+..+|+...-..+++++-+....+.++..+.+. ++..+-......+.. ..+..+|.|+-...
T Consensus 188 g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~g~~~--v~~~~~~~~~~~l~~~~~~~~~d~vld~vg 265 (367)
T cd08263 188 GETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGATH--TVNAAKEDAVAAIREITGGRGVDVVVEALG 265 (367)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCce--EecCCcccHHHHHHHHhCCCCCCEEEEeCC
Confidence 4455545664 5666677777764333888886655555555455432 222211111111100 02345787754322
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
. ...+..+.+.|+++|.++..
T Consensus 266 ~--------------~~~~~~~~~~l~~~G~~v~~ 286 (367)
T cd08263 266 K--------------PETFKLALDVVRDGGRAVVV 286 (367)
T ss_pred C--------------HHHHHHHHHHHhcCCEEEEE
Confidence 1 13677788999999998754
No 436
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=40.45 E-value=1.7e+02 Score=27.11 Aligned_cols=95 Identities=15% Similarity=0.093 Sum_probs=53.1
Q ss_pred CCeEEEEecc-ccHHHHHHHhhCCCCe-EEEEchHHHHHHHHHHcCCCcEE-EEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 126 QPLVVDIGSG-NGLFLLGMARKRKDLN-FLGLELVTHCRDSLQLSGITNGY-FIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 126 ~~~vLDIGcG-tG~~~~~lA~~~p~~~-vvGiDi~~~a~~~a~~~~~~Nv~-f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
+..||=+|+| .|..+..+|+.. +.+ ++++|.++.-++.+++.|.+.+- ....+...+ .... ....+|.++-..
T Consensus 164 g~~vlV~G~G~vG~~~~~~ak~~-G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~-~~~~--~~~~~d~vid~~ 239 (339)
T cd08239 164 RDTVLVVGAGPVGLGALMLARAL-GAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEI-RELT--SGAGADVAIECS 239 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHH-HHHh--CCCCCCEEEECC
Confidence 4566667764 344456667765 455 99999876666666666653221 111111111 1111 223577775332
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.. ...+....+.|+++|++.+.
T Consensus 240 g~--------------~~~~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 240 GN--------------TAARRLALEAVRPWGRLVLV 261 (339)
T ss_pred CC--------------HHHHHHHHHHhhcCCEEEEE
Confidence 21 24567777889999999864
No 437
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=40.37 E-value=23 Score=25.37 Aligned_cols=42 Identities=10% Similarity=-0.058 Sum_probs=33.3
Q ss_pred HHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceee
Q 021567 221 LVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 221 ~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~ 262 (311)
.+....+-|.+|..+.+.+|+....+.+...+.+.|+.....
T Consensus 16 ~~~~~l~~l~~G~~l~v~~d~~~~~~di~~~~~~~g~~~~~~ 57 (70)
T PF01206_consen 16 KAKKALKELPPGEVLEVLVDDPAAVEDIPRWCEENGYEVVEV 57 (70)
T ss_dssp HHHHHHHTSGTT-EEEEEESSTTHHHHHHHHHHHHTEEEEEE
T ss_pred HHHHHHHhcCCCCEEEEEECCccHHHHHHHHHHHCCCEEEEE
Confidence 345556778999999999999998899999999999875544
No 438
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=39.95 E-value=10 Score=29.84 Aligned_cols=18 Identities=33% Similarity=0.466 Sum_probs=14.0
Q ss_pred EEEEeccccHHHHHHHhh
Q 021567 129 VVDIGSGNGLFLLGMARK 146 (311)
Q Consensus 129 vLDIGcGtG~~~~~lA~~ 146 (311)
-+|||||.|...-+--+.
T Consensus 6 NIDIGcG~GNTmda~fRs 23 (124)
T PF07101_consen 6 NIDIGCGAGNTMDAAFRS 23 (124)
T ss_pred ccccccCCCcchhhhhhc
Confidence 479999999987665554
No 439
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=39.84 E-value=51 Score=31.37 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=25.3
Q ss_pred HHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHH-HHh
Q 021567 219 RSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQ-FLE 254 (311)
Q Consensus 219 ~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~-l~~ 254 (311)
+.+|+.+.++|+|||++.+.|-+ .+-+.+++. |.+
T Consensus 220 ~~~L~~~~~~L~~gGrl~VISfH-SLEDRiVK~~f~~ 255 (305)
T TIGR00006 220 EEALQFAPNLLAPGGRLSIISFH-SLEDRIVKNFFRE 255 (305)
T ss_pred HHHHHHHHHHhcCCCEEEEEecC-cHHHHHHHHHHHH
Confidence 67899999999999999998733 344455444 443
No 440
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=39.80 E-value=1.3e+02 Score=27.61 Aligned_cols=77 Identities=13% Similarity=0.018 Sum_probs=45.6
Q ss_pred CCCeEEEEeccccHHHHHHHhhCC--CCeEEEEchH-HHHHHHHHHcCCCcEEEEEccccch---hhhhhccCCCcEeEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRK--DLNFLGLELV-THCRDSLQLSGITNGYFIATNATST---FRSIVASYPGKLILV 198 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p--~~~vvGiDi~-~~a~~~a~~~~~~Nv~f~~~Da~~l---l~~~~~~~~~s~D~V 198 (311)
..+.||=.||..|.++-++|+.+. +..|++.-.. +.+.+.+.+.|+.-..+-..+-++. ......++++++|++
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~Gkld~L 85 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPDGKLDLL 85 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhhCCCCceEEE
Confidence 357899999999999999998743 5677777643 3333333345543333322222222 111223368899988
Q ss_pred EEe
Q 021567 199 SIQ 201 (311)
Q Consensus 199 ~i~ 201 (311)
+=|
T Consensus 86 ~NN 88 (289)
T KOG1209|consen 86 YNN 88 (289)
T ss_pred EcC
Confidence 633
No 441
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=39.37 E-value=1.8e+02 Score=26.78 Aligned_cols=96 Identities=13% Similarity=0.138 Sum_probs=54.6
Q ss_pred CCeEEEEecc-ccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEc-cccchhhhhhccCCCcEeEEEEeCC
Q 021567 126 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIAT-NATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 126 ~~~vLDIGcG-tG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~-Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
+..+|=.|+| .|..+..+|+...+.++++++-++.-.+.+++.|.+.+ +.. +..+..+.+.. ..+.+|.+++...
T Consensus 163 g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~~g~~~v--~~~~~~~~~~~~v~~-~~~~~d~vi~~~~ 239 (338)
T PRK09422 163 GQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEVGADLT--INSKRVEDVAKIIQE-KTGGAHAAVVTAV 239 (338)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHcCCcEE--ecccccccHHHHHHH-hcCCCcEEEEeCC
Confidence 4556666753 46667777776446789999877766666665665332 211 10111111111 1124665544422
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
. ...++...+.|+++|.+...
T Consensus 240 ~--------------~~~~~~~~~~l~~~G~~v~~ 260 (338)
T PRK09422 240 A--------------KAAFNQAVDAVRAGGRVVAV 260 (338)
T ss_pred C--------------HHHHHHHHHhccCCCEEEEE
Confidence 1 35688889999999998854
No 442
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=39.08 E-value=1.9e+02 Score=28.02 Aligned_cols=95 Identities=19% Similarity=0.172 Sum_probs=53.3
Q ss_pred CCeEEEEe-cc-ccHHHHHHHhhCC--CCeEEEEchHHHHHHHHHHc--------CCCcEEEEEc----cccchhhhhhc
Q 021567 126 QPLVVDIG-SG-NGLFLLGMARKRK--DLNFLGLELVTHCRDSLQLS--------GITNGYFIAT----NATSTFRSIVA 189 (311)
Q Consensus 126 ~~~vLDIG-cG-tG~~~~~lA~~~p--~~~vvGiDi~~~a~~~a~~~--------~~~Nv~f~~~----Da~~ll~~~~~ 189 (311)
+..||=+| +| .|..++++|+..- ..+++++|.+..-++.+++. |.+ ..++.. +....+....
T Consensus 176 g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~-~~~i~~~~~~~~~~~v~~~t- 253 (410)
T cd08238 176 GGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIE-LLYVNPATIDDLHATLMELT- 253 (410)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCce-EEEECCCccccHHHHHHHHh-
Confidence 45677776 34 7778888888741 23799999877666666543 221 122221 1111111111
Q ss_pred cCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 190 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 190 ~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
....+|.++..... ...+....+.|+++|.+++
T Consensus 254 -~g~g~D~vid~~g~--------------~~~~~~a~~~l~~~G~~v~ 286 (410)
T cd08238 254 -GGQGFDDVFVFVPV--------------PELVEEADTLLAPDGCLNF 286 (410)
T ss_pred -CCCCCCEEEEcCCC--------------HHHHHHHHHHhccCCeEEE
Confidence 22357777654222 2567778889998886654
No 443
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=39.02 E-value=11 Score=35.79 Aligned_cols=72 Identities=14% Similarity=0.116 Sum_probs=44.4
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcC-CCcE----EEEEccccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG-ITNG----YFIATNATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~-~~Nv----~f~~~Da~~ll~~~~~~~~~s~D~V~ 199 (311)
.+..|+|+=.|-|.|++...-+.....|.++|....+++.++++- ..|| ..+.+|-.. +.++.+.|.|.
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~------~~~~~~AdrVn 267 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRN------PKPRLRADRVN 267 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccc------cCccccchhee
Confidence 467899999999999994433333578999998554433332211 1133 233333322 33578899998
Q ss_pred EeC
Q 021567 200 IQC 202 (311)
Q Consensus 200 i~f 202 (311)
+..
T Consensus 268 LGL 270 (351)
T KOG1227|consen 268 LGL 270 (351)
T ss_pred ecc
Confidence 874
No 444
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=38.81 E-value=66 Score=27.86 Aligned_cols=90 Identities=16% Similarity=0.211 Sum_probs=51.5
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCeEE-EEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLNFL-GLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~vv-GiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
+.+|.=||+|+=..+.++--+..+.+|+ |..-.....+++++.|.. ..+..+. -..-|.|.+..||
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~-----v~~~~eA--------v~~aDvV~~L~PD 70 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFE-----VMSVAEA--------VKKADVVMLLLPD 70 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-E-----CCEHHHH--------HHC-SEEEE-S-H
T ss_pred CCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCe-----eccHHHH--------HhhCCEEEEeCCh
Confidence 4678889998765555554444455655 443333467777777752 2233332 1245889888887
Q ss_pred CCCCCchhhhhhhHHHHH-HHHHhcccCCeEEEEEe
Q 021567 205 PDFNRPEHRWRMVQRSLV-EAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l-~~i~rvLkpGG~l~~~t 239 (311)
. .++++. +++...|+||-.|.|..
T Consensus 71 ~-----------~q~~vy~~~I~p~l~~G~~L~fah 95 (165)
T PF07991_consen 71 E-----------VQPEVYEEEIAPNLKPGATLVFAH 95 (165)
T ss_dssp H-----------HHHHHHHHHHHHHS-TT-EEEESS
T ss_pred H-----------HHHHHHHHHHHhhCCCCCEEEeCC
Confidence 5 334555 88999999999999964
No 445
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=38.74 E-value=1.3e+02 Score=27.96 Aligned_cols=96 Identities=16% Similarity=0.089 Sum_probs=49.8
Q ss_pred CeEEEEecc-ccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcE-EEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 127 PLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNG-YFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 127 ~~vLDIGcG-tG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv-~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
..+|=.|+| .|..+.++|+.....+++++|..+.....+++.+.+.+ .....+...-+.... ....+|.++-....
T Consensus 168 ~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~--~~~~~d~vld~~g~ 245 (345)
T cd08286 168 DTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAKGDAIEQVLELT--DGRGVDVVIEAVGI 245 (345)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCceeccccccHHHHHHHHh--CCCCCCEEEECCCC
Confidence 333335653 23345556776643678888876655555555554321 111112111111111 23457776532111
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
...++.+.+.|+++|.++..
T Consensus 246 --------------~~~~~~~~~~l~~~g~~v~~ 265 (345)
T cd08286 246 --------------PATFELCQELVAPGGHIANV 265 (345)
T ss_pred --------------HHHHHHHHHhccCCcEEEEe
Confidence 24577788999999998753
No 446
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.35 E-value=1.9e+02 Score=23.78 Aligned_cols=67 Identities=21% Similarity=0.209 Sum_probs=43.7
Q ss_pred CCeEEEEeccccHH-HHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 126 QPLVVDIGSGNGLF-LLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 126 ~~~vLDIGcGtG~~-~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
..+|+|+|-|-=.- +..|+++ +..++++|+.+. .+ ...+.++..|+.+---.+. .-.|+|+..=|.
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~--g~dv~atDI~~~---~a----~~g~~~v~DDitnP~~~iY----~~A~lIYSiRpp 80 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAER--GFDVLATDINEK---TA----PEGLRFVVDDITNPNISIY----EGADLIYSIRPP 80 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHc--CCcEEEEecccc---cC----cccceEEEccCCCccHHHh----hCccceeecCCC
Confidence 45899999886443 4455555 478999999765 11 1467899999876421111 235788887665
Q ss_pred C
Q 021567 205 P 205 (311)
Q Consensus 205 P 205 (311)
|
T Consensus 81 p 81 (129)
T COG1255 81 P 81 (129)
T ss_pred H
Confidence 5
No 447
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=37.82 E-value=2.4e+02 Score=25.84 Aligned_cols=96 Identities=15% Similarity=0.158 Sum_probs=54.5
Q ss_pred CCeEEEEe--ccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 126 QPLVVDIG--SGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 126 ~~~vLDIG--cGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
+..+|=.| .+.|..+..+|+..-+.+++++.-+..-.+.+++.|.+.+--...+....+.. . ....+|.++-...
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~-~--~~~~vd~vl~~~~ 225 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATASRPESQEWVLELGAHHVIDHSKPLKAQLEK-L--GLEAVSYVFSLTH 225 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHcCCCEEEECCCCHHHHHHH-h--cCCCCCEEEEcCC
Confidence 45666666 47788888888864367888887665555555555654321101111111111 1 2345777652211
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
. ...+....+.|+++|+++..
T Consensus 226 ~--------------~~~~~~~~~~l~~~G~~v~~ 246 (336)
T TIGR02817 226 T--------------DQHFKEIVELLAPQGRFALI 246 (336)
T ss_pred c--------------HHHHHHHHHHhccCCEEEEE
Confidence 1 25577788899999988754
No 448
>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).
Probab=37.51 E-value=67 Score=29.19 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=24.4
Q ss_pred HHHHHHHhcc--cCCeEEEEEeCcHHHHHHHHHHHHh
Q 021567 220 SLVEAVSDLL--VHDGKVFLQSDIEEVMLRMKQQFLE 254 (311)
Q Consensus 220 ~~l~~i~rvL--kpGG~l~~~tD~~~~~~~~~~~l~~ 254 (311)
..|+.+...+ +..|+++|..|+.-|-.+..++++.
T Consensus 82 ~AL~~ir~~~~~~~~GVVyFADDdN~Ysl~lF~emR~ 118 (223)
T cd00218 82 LALRWIREHLSAKLDGVVYFADDDNTYDLELFEEMRK 118 (223)
T ss_pred HHHHHHHhccccCcceEEEEccCCCcccHHHHHHHhc
Confidence 6677777776 6789999998876665444444443
No 449
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=37.31 E-value=55 Score=23.53 Aligned_cols=41 Identities=5% Similarity=-0.026 Sum_probs=33.5
Q ss_pred HHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCCceee
Q 021567 222 VEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 262 (311)
Q Consensus 222 l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~~~~ 262 (311)
++...+-|.+|+.+.+.+|+....+.+...+++.|+.....
T Consensus 16 ~k~~l~~l~~G~~l~V~~dd~~s~~di~~~~~~~g~~~~~~ 56 (69)
T cd03423 16 LHKKVRKMKPGDTLLVLATDPSTTRDIPKFCTFLGHELLAQ 56 (69)
T ss_pred HHHHHHcCCCCCEEEEEeCCCchHHHHHHHHHHcCCEEEEE
Confidence 44555778999999999999888888999999999976544
No 450
>KOG1367 consensus 3-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=37.27 E-value=64 Score=31.07 Aligned_cols=56 Identities=20% Similarity=0.358 Sum_probs=42.2
Q ss_pred ccCCchhh-----HhhhhceeEEEccccccccccccchhHHHHHHHhhhhcCceeEEEcch
Q 021567 12 LGQGPWKR-----LLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGS 67 (311)
Q Consensus 12 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 67 (311)
|--||-++ -+...|.|+|=||+---=-+.++-|...|..-+..++...+..+..|.
T Consensus 312 LD~GPes~k~fa~~v~~aKtIvWNGP~GvfE~~~Fa~GTeal~d~~v~~t~~G~~tiiGGG 372 (416)
T KOG1367|consen 312 LDIGPESIKMFAEAVATAKTIVWNGPPGVFEFEKFAAGTEALMDALVKLTGKGVTTIIGGG 372 (416)
T ss_pred cccChHHHHHHHHHHhhhhEEEecCCCcccchhhhhhhHHHHHHHHHHHhcCCcEEEEcCC
Confidence 34566554 467899999999986433456888999999999999988887665543
No 451
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=36.83 E-value=2.1e+02 Score=26.67 Aligned_cols=104 Identities=14% Similarity=0.183 Sum_probs=62.1
Q ss_pred cccHHHHHHHhh--CCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchh
Q 021567 135 GNGLFLLGMARK--RKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEH 212 (311)
Q Consensus 135 GtG~~~~~lA~~--~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~ 212 (311)
|-|.....+.++ ..+..+++.|+...+.+.++..+...+. ...+++.. ++ .. -.|++..|--.
T Consensus 7 GLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~----sl~el~~~-L~--~p--r~vWlMvPag~------ 71 (300)
T COG1023 7 GLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAA----SLDELVAK-LS--AP--RIVWLMVPAGD------ 71 (300)
T ss_pred ccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCcccc----CHHHHHHh-cC--CC--cEEEEEccCCC------
Confidence 456666666655 3367899999999999998877643211 12333221 22 12 45666655321
Q ss_pred hhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHH---HHHhcCCCc
Q 021567 213 RWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQ---QFLEYGKGK 259 (311)
Q Consensus 213 krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~---~l~~~g~~~ 259 (311)
+....+++++..|.+|-.++= -.+ .+++...+ ++.+.|...
T Consensus 72 ----it~~vi~~la~~L~~GDivID-GGN-S~y~Ds~rr~~~l~~kgi~f 115 (300)
T COG1023 72 ----ITDAVIDDLAPLLSAGDIVID-GGN-SNYKDSLRRAKLLAEKGIHF 115 (300)
T ss_pred ----chHHHHHHHHhhcCCCCEEEE-CCc-cchHHHHHHHHHHHhcCCeE
Confidence 336899999999999887652 223 34444443 366666543
No 452
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=36.65 E-value=2.8e+02 Score=24.87 Aligned_cols=93 Identities=15% Similarity=0.099 Sum_probs=54.6
Q ss_pred CCeEEEEec--cccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 126 QPLVVDIGS--GNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 126 ~~~vLDIGc--GtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
+..+|=.|+ +.|..+..+|+.. +..++.+..+..-.+.+...|.+.+ +. +-.++...+... ...+|.+.-...
T Consensus 143 g~~vlV~ga~g~~g~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g~~~~--~~-~~~~~~~~i~~~-~~~~d~vl~~~~ 217 (320)
T cd08243 143 GDTLLIRGGTSSVGLAALKLAKAL-GATVTATTRSPERAALLKELGADEV--VI-DDGAIAEQLRAA-PGGFDKVLELVG 217 (320)
T ss_pred CCEEEEEcCCChHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhcCCcEE--Ee-cCccHHHHHHHh-CCCceEEEECCC
Confidence 566776775 6788888888875 5778888766555555555555332 11 111221111111 345777753211
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
...+.+..+.|+++|++...
T Consensus 218 ---------------~~~~~~~~~~l~~~g~~v~~ 237 (320)
T cd08243 218 ---------------TATLKDSLRHLRPGGIVCMT 237 (320)
T ss_pred ---------------hHHHHHHHHHhccCCEEEEE
Confidence 14567778999999998753
No 453
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=36.46 E-value=1.8e+02 Score=26.90 Aligned_cols=107 Identities=14% Similarity=0.014 Sum_probs=49.9
Q ss_pred CeEEEEeccc-cHHHH-HHHhhCCCCeEEEE-chHH-HHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 127 PLVVDIGSGN-GLFLL-GMARKRKDLNFLGL-ELVT-HCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 127 ~~vLDIGcGt-G~~~~-~lA~~~p~~~vvGi-Di~~-~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
-+|-=||||. |.... .+.+..|+..++++ |... .+.+.++..+.. -...|..++ + . ..|.|++.-
T Consensus 7 irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~---~~~~~~eel----l---~-~~D~Vvi~t 75 (271)
T PRK13302 7 LRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRP---PPVVPLDQL----A---T-HADIVVEAA 75 (271)
T ss_pred eEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCC---cccCCHHHH----h---c-CCCEEEECC
Confidence 3466678875 43322 23322466777654 5543 333333332311 122344444 2 1 358988875
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe-CcHHHHHHHHHHHHhcCCC
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS-DIEEVMLRMKQQFLEYGKG 258 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t-D~~~~~~~~~~~l~~~g~~ 258 (311)
|+.. | .++ +...|+.|-.+++.+ ......+.+.+..++.|..
T Consensus 76 p~~~----h-------~e~---~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~ 118 (271)
T PRK13302 76 PASV----L-------RAI---VEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQ 118 (271)
T ss_pred CcHH----H-------HHH---HHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCE
Confidence 5431 1 122 234456665554422 1111245666666666653
No 454
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=36.04 E-value=1.7e+02 Score=28.02 Aligned_cols=90 Identities=17% Similarity=0.200 Sum_probs=61.5
Q ss_pred CCeEEEEeccccHHHHHHHhhCCCCe-EEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKDLN-FLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~~~-vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
+..|.=||||+=....++--+..+.+ ++|+---..+.++|++.|.. ..+..+. -..-|+|.+.-||
T Consensus 18 gK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~-----V~~v~ea--------~k~ADvim~L~PD 84 (338)
T COG0059 18 GKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFK-----VYTVEEA--------AKRADVVMILLPD 84 (338)
T ss_pred CCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCE-----eecHHHH--------hhcCCEEEEeCch
Confidence 56899999999888777766544443 56665444457777777753 3333332 2356889888887
Q ss_pred CCCCCchhhhhhhHHHHHH-HHHhcccCCeEEEEEe
Q 021567 205 PDFNRPEHRWRMVQRSLVE-AVSDLLVHDGKVFLQS 239 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~-~i~rvLkpGG~l~~~t 239 (311)
-. +++..+ +|...|+.|-.|.|+.
T Consensus 85 e~-----------q~~vy~~~I~p~Lk~G~aL~FaH 109 (338)
T COG0059 85 EQ-----------QKEVYEKEIAPNLKEGAALGFAH 109 (338)
T ss_pred hh-----------HHHHHHHHhhhhhcCCceEEecc
Confidence 52 345555 8999999999999864
No 455
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=35.76 E-value=1.9e+02 Score=27.54 Aligned_cols=92 Identities=12% Similarity=0.141 Sum_probs=48.7
Q ss_pred CCeEEEEecc-ccHHHHHHHhhCCCCeEEEEchHHHH-HHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 126 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHC-RDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 126 ~~~vLDIGcG-tG~~~~~lA~~~p~~~vvGiDi~~~a-~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
+..||=.|+| .|..++++|+.. +..+++++.+... .+.+++.|.+.+ +-..+...+ ... .+.+|.++-...
T Consensus 184 g~~VlV~G~G~vG~~avq~Ak~~-Ga~vi~~~~~~~~~~~~~~~~Ga~~v-i~~~~~~~~-~~~----~~~~D~vid~~g 256 (360)
T PLN02586 184 GKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISSSSNKEDEAINRLGADSF-LVSTDPEKM-KAA----IGTMDYIIDTVS 256 (360)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCcchhhhHHHhCCCcEE-EcCCCHHHH-Hhh----cCCCCEEEECCC
Confidence 4556658875 355566677765 5678888765432 233334454321 111111111 111 123676653211
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
. ...++...+.|++||.+...
T Consensus 257 ~--------------~~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 257 A--------------VHALGPLLGLLKVNGKLITL 277 (360)
T ss_pred C--------------HHHHHHHHHHhcCCcEEEEe
Confidence 1 24567778899999998864
No 456
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=35.01 E-value=2.1e+02 Score=22.00 Aligned_cols=106 Identities=18% Similarity=0.151 Sum_probs=63.6
Q ss_pred EEEEeccccHH--HHHHHhhCCCCeEEE-EchHHHHHHH-HHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 129 VVDIGSGNGLF--LLGMARKRKDLNFLG-LELVTHCRDS-LQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 129 vLDIGcGtG~~--~~~lA~~~p~~~vvG-iDi~~~a~~~-a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
+.=||+|.-.- ...+.+..|+..++| +|......+. ++..+.+ ...|..+++. +..+|.|++.-|+
T Consensus 3 v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~----~~~~~~~ll~------~~~~D~V~I~tp~ 72 (120)
T PF01408_consen 3 VGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIP----VYTDLEELLA------DEDVDAVIIATPP 72 (120)
T ss_dssp EEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSE----EESSHHHHHH------HTTESEEEEESSG
T ss_pred EEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhccc----chhHHHHHHH------hhcCCEEEEecCC
Confidence 55678865432 223344457777775 5665443443 3444443 6777777643 3479999998665
Q ss_pred CCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE---eCcHHHHHHHHHHHHhcCCC
Q 021567 205 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ---SDIEEVMLRMKQQFLEYGKG 258 (311)
Q Consensus 205 P~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~---tD~~~~~~~~~~~l~~~g~~ 258 (311)
.. | .+.+...|+-|-.+++. +.+.+-.+.+.+..++.+..
T Consensus 73 ~~----h----------~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~ 115 (120)
T PF01408_consen 73 SS----H----------AEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEKGVK 115 (120)
T ss_dssp GG----H----------HHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSC
T ss_pred cc----h----------HHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCE
Confidence 31 1 23344556677777775 34556677788888877653
No 457
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=34.41 E-value=2.5e+02 Score=27.37 Aligned_cols=45 Identities=22% Similarity=0.238 Sum_probs=25.3
Q ss_pred cEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 194 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 194 s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
..|.|++..|+|........-+.+ ...++.+...|++|-.++..+
T Consensus 76 ~advvii~vpt~~~~~~~~d~~~v-~~~~~~i~~~l~~g~lvi~~S 120 (411)
T TIGR03026 76 DADVIIICVPTPLKEDGSPDLSYV-ESAAETIAKHLRKGATVVLES 120 (411)
T ss_pred hCCEEEEEeCCCCCCCCCcChHHH-HHHHHHHHHhcCCCCEEEEeC
Confidence 457888887877422111100111 355677788888887666543
No 458
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=34.19 E-value=1.3e+02 Score=23.75 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=15.3
Q ss_pred EEec-c-ccHHHHHHHhhCCCCeEEEE
Q 021567 131 DIGS-G-NGLFLLGMARKRKDLNFLGL 155 (311)
Q Consensus 131 DIGc-G-tG~~~~~lA~~~p~~~vvGi 155 (311)
=+|+ | .|..........|+..++++
T Consensus 4 iiG~~g~~g~~~~~~l~~~~~~~l~av 30 (122)
T smart00859 4 IVGATGYVGQELLRLLAEHPDFEVVAL 30 (122)
T ss_pred EECCCChHHHHHHHHHhcCCCceEEEE
Confidence 3563 3 44445555555678888888
No 459
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=33.63 E-value=77 Score=29.13 Aligned_cols=59 Identities=12% Similarity=0.041 Sum_probs=36.2
Q ss_pred CCCeEEEEeccccHHHHHHHhhCC-CCeEEEEch-HHHHHHHHHHcCCCcEEEEEccccch
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEL-VTHCRDSLQLSGITNGYFIATNATST 183 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p-~~~vvGiDi-~~~a~~~a~~~~~~Nv~f~~~Da~~l 183 (311)
.+.-|+|||.|.|.++..+....- ...++-.|- -...++.+++.........++|+..+
T Consensus 50 ~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 50 TNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAPGKLRIHHGDVLRF 110 (326)
T ss_pred ccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCCcceEEecccccee
Confidence 457799999999999999976532 123444441 11233333333334677778888764
No 460
>COG0425 SirA Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]
Probab=33.36 E-value=1.2e+02 Score=22.60 Aligned_cols=55 Identities=16% Similarity=0.097 Sum_probs=40.7
Q ss_pred CcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcC-CCce
Q 021567 193 GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG-KGKL 260 (311)
Q Consensus 193 ~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g-~~~~ 260 (311)
..+|+-=..||-|. --.+...+-|++|..|.+.+|+....+.+....++.+ +..+
T Consensus 6 ~~LD~rG~~CP~Pv-------------~~~kk~l~~m~~Ge~LeV~~ddp~~~~dIp~~~~~~~~~~ll 61 (78)
T COG0425 6 KVLDLRGLRCPGPV-------------VETKKALAKLKPGEILEVIADDPAAKEDIPAWAKKEGGHELL 61 (78)
T ss_pred eEEeccCCcCCccH-------------HHHHHHHHcCCCCCEEEEEecCcchHHHHHHHHHHcCCcEEE
Confidence 46777777889884 2344556779999999999999888777777777555 5544
No 461
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=33.34 E-value=4.6e+02 Score=25.46 Aligned_cols=38 Identities=21% Similarity=0.475 Sum_probs=27.1
Q ss_pred hcCCCCCCeEEEEeccccH----HHHHHHhh---CCCCeEEEEch
Q 021567 120 AYHDPAQPLVVDIGSGNGL----FLLGMARK---RKDLNFLGLEL 157 (311)
Q Consensus 120 ~f~~~~~~~vLDIGcGtG~----~~~~lA~~---~p~~~vvGiDi 157 (311)
.+.....-.|+|+|.|.|. ++..||.+ -|..+++||+.
T Consensus 105 A~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~ 149 (374)
T PF03514_consen 105 AFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGP 149 (374)
T ss_pred HhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccC
Confidence 3333345689999999995 45556665 36779999996
No 462
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=33.21 E-value=3.5e+02 Score=25.74 Aligned_cols=98 Identities=13% Similarity=0.158 Sum_probs=50.9
Q ss_pred CCeEEEEeccc-cHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEc----cccchhhhhhccCCCcEeEEEE
Q 021567 126 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIAT----NATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 126 ~~~vLDIGcGt-G~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~----Da~~ll~~~~~~~~~s~D~V~i 200 (311)
+..||=.|+|. |..++.+|+.....++++++......+.+++.|.+.+--.+. +..+-+.... ....+|.|.-
T Consensus 204 g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~v~~~~--~g~gvDvvld 281 (384)
T cd08265 204 GAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGADYVFNPTKMRDCLSGEKVMEVT--KGWGADIQVE 281 (384)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcccccccccHHHHHHHhc--CCCCCCEEEE
Confidence 34444446532 333455566654337999987665555555566532211111 1111111122 2335787753
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
...++ ...+.+..+.|+++|++...
T Consensus 282 ~~g~~-------------~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 282 AAGAP-------------PATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred CCCCc-------------HHHHHHHHHHHHcCCEEEEE
Confidence 32221 24677888899999999864
No 463
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=32.96 E-value=1.5e+02 Score=30.31 Aligned_cols=45 Identities=20% Similarity=0.267 Sum_probs=32.3
Q ss_pred CCCeEEEEecccc-HHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCC
Q 021567 125 AQPLVVDIGSGNG-LFLLGMARKRKDLNFLGLELVTHCRDSLQLSGI 170 (311)
Q Consensus 125 ~~~~vLDIGcGtG-~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~ 170 (311)
+..+++=+|||.= ..+...++.. +..++++|.....++.++..|.
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~lGa 208 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQSMGA 208 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCC
Confidence 3578999999875 4455556654 5679999987777777766554
No 464
>KOG0564 consensus 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=32.84 E-value=78 Score=32.20 Aligned_cols=125 Identities=20% Similarity=0.295 Sum_probs=69.0
Q ss_pred CeEEEEecccc----HHHHHHHhhCCCCeEEEEc-------------hHHHHHHHHHHcCCCcEEEEEccc---------
Q 021567 127 PLVVDIGSGNG----LFLLGMARKRKDLNFLGLE-------------LVTHCRDSLQLSGITNGYFIATNA--------- 180 (311)
Q Consensus 127 ~~vLDIGcGtG----~~~~~lA~~~p~~~vvGiD-------------i~~~a~~~a~~~~~~Nv~f~~~Da--------- 180 (311)
|..+|+==|.| +.+..+|... -++.++| ++..|++++++.|+.|+--++||-
T Consensus 48 P~FvdvTWgagG~ta~~s~~ias~~--q~~~~v~t~mHlTCtn~~~~~Id~aLe~a~~~GirNILALRGDpP~g~d~~~~ 125 (590)
T KOG0564|consen 48 PTFVDVTWGAGGSTAELSLGIASSA--QNVCGLETCMHLTCTNMPKEMIDKALEQAKALGIRNILALRGDPPIGQDKWVE 125 (590)
T ss_pred CeEEEEEecCCCCcccccHHHHHHH--HHhcCccceeeeeccCccHHHHHHHHHHHHHhCchhhhhhcCCCCCCcccccc
Confidence 67888755544 4566666552 2456666 357899999999999999999992
Q ss_pred --------cchhhhhhccCCCcEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE---eCcHHHHHHHH
Q 021567 181 --------TSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ---SDIEEVMLRMK 249 (311)
Q Consensus 181 --------~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~---tD~~~~~~~~~ 249 (311)
.++.+.+-..+...|+.-+..||.-++....+. ...=|.-+.+..-.|+-|++. -|.+. +...+
T Consensus 126 ~e~gF~yA~DLVr~Irs~YGDyF~IgVAgYPEghpe~~~~~----~~~Dl~yLk~KvdaGaDFIiTQlFYd~e~-flkfv 200 (590)
T KOG0564|consen 126 EEGGFRYAVDLVRYIRSKYGDYFCIGVAGYPEGHPEAPSHD----YLADLPYLKEKVDAGADFIITQLFYDVET-FLKFV 200 (590)
T ss_pred ccCCchhHHHHHHHHHHHhCCeEEEEeccCCCCCcCCcccc----hhhhhHHHHHhhcccchhhhhhhhcCHHH-HHHHH
Confidence 222221111134556666667776655422210 012233344444557766653 13332 33344
Q ss_pred HHHHhcCCC
Q 021567 250 QQFLEYGKG 258 (311)
Q Consensus 250 ~~l~~~g~~ 258 (311)
..+++.|..
T Consensus 201 ~~cR~~gi~ 209 (590)
T KOG0564|consen 201 KDCRAAGIN 209 (590)
T ss_pred HHHHHhCCC
Confidence 456666653
No 465
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=32.53 E-value=64 Score=30.80 Aligned_cols=86 Identities=19% Similarity=0.063 Sum_probs=40.9
Q ss_pred HHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHH-HhcCCCceeeecccc-ccccCCCCC--CCCCCCCCCCHHHHHHHH
Q 021567 219 RSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQF-LEYGKGKLVLVQDEC-DTKTNQGGW--LGENSFGVRSDWEQHVID 294 (311)
Q Consensus 219 ~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l-~~~g~~~~~~~~d~y-~~~~~~~~~--~~~~~~~~~T~yE~~~~~ 294 (311)
+.+|..+..+|+|||++.+.|-+ .+-+.+++.+ .+..... ....+.. +...+...| ....| -.+|+-|...-.
T Consensus 221 ~~~L~~a~~~L~~gGrl~VISFH-SLEDRiVK~~f~~~~~~~-~~p~~lp~~~~~~~~~~~~i~kk~-i~ps~~Ei~~Np 297 (310)
T PF01795_consen 221 ERGLEAAPDLLKPGGRLVVISFH-SLEDRIVKQFFRELAKSC-KCPPGLPVCECGKHPKFKLITKKP-ITPSEEEIEENP 297 (310)
T ss_dssp HHHHHHHHHHEEEEEEEEEEESS-HHHHHHHHHHHHCCSSC-------------------EESESS--B---HHHHHH-G
T ss_pred HHHHHHHHHHhcCCcEEEEEEec-chhhHHHHHHHHHhcccC-CCcccccccccccccceEEccCCc-cCCChhhhhcCC
Confidence 67899999999999999998844 4455555544 3332221 1100000 000000000 11112 337888888777
Q ss_pred cCCCeEEEEEEeC
Q 021567 295 RGAPMYRLMLSKP 307 (311)
Q Consensus 295 ~G~~i~~~~~~k~ 307 (311)
+.++-.--+++|+
T Consensus 298 RsRSAkLRv~ek~ 310 (310)
T PF01795_consen 298 RSRSAKLRVAEKI 310 (310)
T ss_dssp GGTT-EEEEEEE-
T ss_pred chHhhhhheEEeC
Confidence 7777666666653
No 466
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=32.35 E-value=4.2e+02 Score=25.91 Aligned_cols=95 Identities=13% Similarity=0.122 Sum_probs=60.1
Q ss_pred CCCeEEEEeccc-cHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEc----cccchhhhhhccCCCcEeEEE
Q 021567 125 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIAT----NATSTFRSIVASYPGKLILVS 199 (311)
Q Consensus 125 ~~~~vLDIGcGt-G~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~----Da~~ll~~~~~~~~~s~D~V~ 199 (311)
.+..+.=+|||. |...+.-|+..-...+++||+.+.-++.+++.|.. +++.. |+.+.+..+ .++-.|..+
T Consensus 185 ~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT--~~vn~~~~~~vv~~i~~~---T~gG~d~~~ 259 (366)
T COG1062 185 PGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGAT--HFVNPKEVDDVVEAIVEL---TDGGADYAF 259 (366)
T ss_pred CCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCc--eeecchhhhhHHHHHHHh---cCCCCCEEE
Confidence 467888999975 66667777777778999999998888888877754 33332 333332222 243445542
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
-.--+ .+.++.....+.++|...+.
T Consensus 260 e~~G~--------------~~~~~~al~~~~~~G~~v~i 284 (366)
T COG1062 260 ECVGN--------------VEVMRQALEATHRGGTSVII 284 (366)
T ss_pred EccCC--------------HHHHHHHHHHHhcCCeEEEE
Confidence 21111 24566666777778887774
No 467
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=31.62 E-value=1.6e+02 Score=28.49 Aligned_cols=40 Identities=23% Similarity=0.109 Sum_probs=26.6
Q ss_pred CCeEEEEecc-ccHHHHHHHhhCCCCeEEEEchHHHHHHHHH
Q 021567 126 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQ 166 (311)
Q Consensus 126 ~~~vLDIGcG-tG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~ 166 (311)
...++=||+| .|..+...++.. +.+++.+|......+.+.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~~~~~~~l~ 207 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGL-GATVTILDINIDRLRQLD 207 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHH
Confidence 3458888887 455566666655 468999998765555544
No 468
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=31.39 E-value=84 Score=25.55 Aligned_cols=101 Identities=9% Similarity=0.070 Sum_probs=53.7
Q ss_pred cccHHHHHHHhhC--CCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhh--hhhc---cCCCcEeEEEEeCCCCCC
Q 021567 135 GNGLFLLGMARKR--KDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFR--SIVA---SYPGKLILVSIQCPNPDF 207 (311)
Q Consensus 135 GtG~~~~~lA~~~--p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~--~~~~---~~~~s~D~V~i~fpdP~~ 207 (311)
|.|.++..+|.+. .+..|..+.-.. -.+..++.++ .+...+...... ...+ .....+|.|++...
T Consensus 5 G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK---- 76 (151)
T PF02558_consen 5 GAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGL---TITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK---- 76 (151)
T ss_dssp STSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCE---EEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS----
T ss_pred CcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeE---EEEecccceecccccccCcchhccCCCcEEEEEec----
Confidence 4455555554432 577888888766 3333454442 222222111000 0000 12467999988732
Q ss_pred CCchhhhhhhHHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHH
Q 021567 208 NRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQ 250 (311)
Q Consensus 208 k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~ 250 (311)
..+ .+..++.+.+.+.|+..+++..+...-.+.+.+
T Consensus 77 -a~~------~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~ 112 (151)
T PF02558_consen 77 -AYQ------LEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAE 112 (151)
T ss_dssp -GGG------HHHHHHHHCTGEETTEEEEEESSSSSHHHHHHC
T ss_pred -ccc------hHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHH
Confidence 222 257889999999999888776554333333333
No 469
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=31.31 E-value=3.5e+02 Score=25.08 Aligned_cols=102 Identities=21% Similarity=0.217 Sum_probs=55.9
Q ss_pred cccHHHHHHHhh--CCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchh
Q 021567 135 GNGLFLLGMARK--RKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEH 212 (311)
Q Consensus 135 GtG~~~~~lA~~--~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~ 212 (311)
|.|..+..+|.. ..+..+++.|.+....+.+...+.. ...+..+. . ...|.|++..|++.
T Consensus 8 GlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~----~~~s~~~~----~----~~aDvVi~~vp~~~------ 69 (296)
T PRK15461 8 GLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGAT----PAASPAQA----A----AGAEFVITMLPNGD------ 69 (296)
T ss_pred eeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCc----ccCCHHHH----H----hcCCEEEEecCCHH------
Confidence 445555555443 1246899999877666666554431 11122111 1 23478888776541
Q ss_pred hhhhhHHHHH---HHHHhcccCCeEEE-EEeCcHHHHHHHHHHHHhcCCC
Q 021567 213 RWRMVQRSLV---EAVSDLLVHDGKVF-LQSDIEEVMLRMKQQFLEYGKG 258 (311)
Q Consensus 213 krRl~~~~~l---~~i~rvLkpGG~l~-~~tD~~~~~~~~~~~l~~~g~~ 258 (311)
.+ +..+ +.+...+++|-.++ ..|-.....+.+.+.+.+.|..
T Consensus 70 ---~~-~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~ 115 (296)
T PRK15461 70 ---LV-RSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS 115 (296)
T ss_pred ---HH-HHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence 01 1222 23444566665543 3456666777888888888765
No 470
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=31.26 E-value=3.3e+02 Score=26.51 Aligned_cols=51 Identities=16% Similarity=0.176 Sum_probs=35.1
Q ss_pred CCeEEEEc-h-HHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCC
Q 021567 149 DLNFLGLE-L-VTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPD 206 (311)
Q Consensus 149 ~~~vvGiD-i-~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~ 206 (311)
+..+++|= - .++|.+-|++++++|... .+.-+++ . .+..+|.|++.-|+|.
T Consensus 32 ~~~Ivava~~s~~~A~~fAq~~~~~~~k~-y~syEeL----a--kd~~vDvVyi~~~~~q 84 (351)
T KOG2741|consen 32 NHQIVAVADPSLERAKEFAQRHNIPNPKA-YGSYEEL----A--KDPEVDVVYISTPNPQ 84 (351)
T ss_pred CcEEEEEecccHHHHHHHHHhcCCCCCcc-ccCHHHH----h--cCCCcCEEEeCCCCcc
Confidence 66788775 2 467888888888765443 3333444 2 4788999999988884
No 471
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=31.06 E-value=3.7e+02 Score=24.73 Aligned_cols=96 Identities=15% Similarity=0.122 Sum_probs=54.0
Q ss_pred CCeEEEEecc--ccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEc-cccchhhhhhccCCCcEeEEEEeC
Q 021567 126 QPLVVDIGSG--NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIAT-NATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 126 ~~~vLDIGcG--tG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~-Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
+..+|=.|+| .|..+..+|+.. +.+++.++-++.-.+.++..+.+.+.-.+. |...-+.... ....+|.++-..
T Consensus 166 ~~~vlV~g~~~~vg~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~--~~~~vd~vl~~~ 242 (341)
T cd08297 166 GDWVVISGAGGGLGHLGVQYAKAM-GLRVIAIDVGDEKLELAKELGADAFVDFKKSDDVEAVKELT--GGGGAHAVVVTA 242 (341)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHcCCcEEEcCCCccHHHHHHHHh--cCCCCCEEEEcC
Confidence 4666666664 788888888876 568888876554444444445432211111 1111111111 234578775321
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.. ...+....+.|+++|++...
T Consensus 243 ~~--------------~~~~~~~~~~l~~~g~~v~~ 264 (341)
T cd08297 243 VS--------------AAAYEQALDYLRPGGTLVCV 264 (341)
T ss_pred Cc--------------hHHHHHHHHHhhcCCEEEEe
Confidence 11 25677788999999999864
No 472
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=31.05 E-value=3.5e+02 Score=25.80 Aligned_cols=120 Identities=9% Similarity=0.040 Sum_probs=72.1
Q ss_pred CCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHH----HHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEE
Q 021567 125 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 200 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~----~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i 200 (311)
.+..|+=+| ---.+++++|-..-...+.-+|+.++.++ -+++.|+.|+..+.-|...-+++-+ ...||.+..
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~---~~kFDvfiT 227 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDL---KRKFDVFIT 227 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHH---HhhCCeeec
Confidence 456788888 44445555555433457888888765543 3456788899999999887654433 578887754
Q ss_pred eCCCCCCCCchhhhhhhHHHHHHHHHhcccCC---eEEEEEeCcHHHHHH--HHH-HHHhcCC
Q 021567 201 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD---GKVFLQSDIEEVMLR--MKQ-QFLEYGK 257 (311)
Q Consensus 201 ~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpG---G~l~~~tD~~~~~~~--~~~-~l~~~g~ 257 (311)
||- ..-.. -+.|+.+=-..||.- |++.+.+-.....+| +.+ .+.++|+
T Consensus 228 ---DPp-eTi~a-----lk~FlgRGI~tLkg~~~aGyfgiT~ressidkW~eiQr~lIn~~gv 281 (354)
T COG1568 228 ---DPP-ETIKA-----LKLFLGRGIATLKGEGCAGYFGITRRESSIDKWREIQRILINEMGV 281 (354)
T ss_pred ---Cch-hhHHH-----HHHHHhccHHHhcCCCccceEeeeeccccHHHHHHHHHHHHHhcCe
Confidence 441 11000 035666555667765 899987644444443 334 3455554
No 473
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=30.97 E-value=2.3e+02 Score=27.27 Aligned_cols=92 Identities=14% Similarity=0.160 Sum_probs=49.6
Q ss_pred CCeEEEEecc-ccHHHHHHHhhCCCCeEEEEchHHH-HHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 126 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTH-CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 126 ~~~vLDIGcG-tG~~~~~lA~~~p~~~vvGiDi~~~-a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
+..||=.|+| .|..+.++|+.. +..+++++.+.. -.+.+++.|.+.+- -..+...+ .... +.+|.++-.-.
T Consensus 179 g~~VlV~G~G~vG~~avq~Ak~~-Ga~Vi~~~~~~~~~~~~a~~lGa~~~i-~~~~~~~v-~~~~----~~~D~vid~~G 251 (375)
T PLN02178 179 GKRLGVNGLGGLGHIAVKIGKAF-GLRVTVISRSSEKEREAIDRLGADSFL-VTTDSQKM-KEAV----GTMDFIIDTVS 251 (375)
T ss_pred CCEEEEEcccHHHHHHHHHHHHc-CCeEEEEeCChHHhHHHHHhCCCcEEE-cCcCHHHH-HHhh----CCCcEEEECCC
Confidence 5666667774 355566677765 567888886533 24444455553221 11111112 1111 23676643211
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
. +..+....+.|++||.+...
T Consensus 252 ~--------------~~~~~~~~~~l~~~G~iv~v 272 (375)
T PLN02178 252 A--------------EHALLPLFSLLKVSGKLVAL 272 (375)
T ss_pred c--------------HHHHHHHHHhhcCCCEEEEE
Confidence 1 23567777889999998764
No 474
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=30.84 E-value=2.1e+02 Score=24.40 Aligned_cols=88 Identities=13% Similarity=0.095 Sum_probs=48.9
Q ss_pred CCCeEEEEeccccHHHHHHHh---hCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 125 AQPLVVDIGSGNGLFLLGMAR---KRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 125 ~~~~vLDIGcGtG~~~~~lA~---~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
.+.+|.=||+| .++..+|+ .+ +.+|+++|............+ + ...+..+++ ...|.|+++
T Consensus 35 ~g~tvgIiG~G--~IG~~vA~~l~~f-G~~V~~~d~~~~~~~~~~~~~---~--~~~~l~ell--------~~aDiv~~~ 98 (178)
T PF02826_consen 35 RGKTVGIIGYG--RIGRAVARRLKAF-GMRVIGYDRSPKPEEGADEFG---V--EYVSLDELL--------AQADIVSLH 98 (178)
T ss_dssp TTSEEEEESTS--HHHHHHHHHHHHT-T-EEEEEESSCHHHHHHHHTT---E--EESSHHHHH--------HH-SEEEE-
T ss_pred CCCEEEEEEEc--CCcCeEeeeeecC-CceeEEecccCChhhhccccc---c--eeeehhhhc--------chhhhhhhh
Confidence 35778888775 45555544 34 679999997544333222221 2 333555543 246899999
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
+|-- +.. +.+++.++| ..||+|.+|+=
T Consensus 99 ~plt-~~T----~~li~~~~l----~~mk~ga~lvN 125 (178)
T PF02826_consen 99 LPLT-PET----RGLINAEFL----AKMKPGAVLVN 125 (178)
T ss_dssp SSSS-TTT----TTSBSHHHH----HTSTTTEEEEE
T ss_pred hccc-ccc----ceeeeeeee----eccccceEEEe
Confidence 8732 111 225555555 56888887664
No 475
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=30.80 E-value=3e+02 Score=25.23 Aligned_cols=102 Identities=14% Similarity=0.109 Sum_probs=53.1
Q ss_pred cccHHHHHHHhh--CCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCchh
Q 021567 135 GNGLFLLGMARK--RKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEH 212 (311)
Q Consensus 135 GtG~~~~~lA~~--~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~h~ 212 (311)
|.|..+..+|.. ..+.+++++|.+....+.+...+.. ...+..+. + ...|.|++..|++. +
T Consensus 6 G~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~----~~~~~~~~----~----~~aDivi~~vp~~~----~- 68 (291)
T TIGR01505 6 GLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAV----TAETARQV----T----EQADVIFTMVPDSP----Q- 68 (291)
T ss_pred EecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCc----ccCCHHHH----H----hcCCEEEEecCCHH----H-
Confidence 345555554443 2256899999877666666554431 11122221 1 23588888877642 0
Q ss_pred hhhhhHHHHH---HHHHhcccCCeEEEE-EeCcHHHHHHHHHHHHhcCCC
Q 021567 213 RWRMVQRSLV---EAVSDLLVHDGKVFL-QSDIEEVMLRMKQQFLEYGKG 258 (311)
Q Consensus 213 krRl~~~~~l---~~i~rvLkpGG~l~~-~tD~~~~~~~~~~~l~~~g~~ 258 (311)
+ ...+ +.+...++||-.++- +|-.....+.+.+.+.+.|..
T Consensus 69 ----~-~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~ 113 (291)
T TIGR01505 69 ----V-EEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGID 113 (291)
T ss_pred ----H-HHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence 1 1222 234456677665542 333344455666777766543
No 476
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=30.79 E-value=57 Score=30.84 Aligned_cols=35 Identities=29% Similarity=0.305 Sum_probs=25.2
Q ss_pred HHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHH-HHh
Q 021567 219 RSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQ-FLE 254 (311)
Q Consensus 219 ~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~-l~~ 254 (311)
+.+|..+..+|+|||++.+.|-+ ..-+.+++. |.+
T Consensus 216 ~~~L~~~~~~L~~gGrl~visfH-SlEDriVK~~f~~ 251 (296)
T PRK00050 216 ERALEAALDLLKPGGRLAVISFH-SLEDRIVKRFFRE 251 (296)
T ss_pred HHHHHHHHHHhcCCCEEEEEecC-cHHHHHHHHHHHH
Confidence 68899999999999999998733 344445444 443
No 477
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=30.77 E-value=1.5e+02 Score=27.38 Aligned_cols=85 Identities=8% Similarity=0.114 Sum_probs=47.3
Q ss_pred ccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchh---hhhhccCCCcEeEEEEeCCCCCCCCc
Q 021567 134 SGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTF---RSIVASYPGKLILVSIQCPNPDFNRP 210 (311)
Q Consensus 134 cGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll---~~~~~~~~~s~D~V~i~fpdP~~k~~ 210 (311)
-+.|..+.++|+.. +.++++++.+..-.+.+++.|.+. ++..+-.+.. .... ....+|.++-. .-.
T Consensus 154 g~vG~~a~q~a~~~-G~~vi~~~~~~~~~~~~~~~g~~~--~i~~~~~~~~~~v~~~~--~~~~~d~vid~-~g~----- 222 (324)
T cd08291 154 SALGRMLVRLCKAD-GIKVINIVRRKEQVDLLKKIGAEY--VLNSSDPDFLEDLKELI--AKLNATIFFDA-VGG----- 222 (324)
T ss_pred cHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCCcE--EEECCCccHHHHHHHHh--CCCCCcEEEEC-CCc-----
Confidence 34566777788764 678999987776666666655442 2222212221 1111 22347766532 111
Q ss_pred hhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 211 EHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 211 h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.......+.|+++|+++..
T Consensus 223 ---------~~~~~~~~~l~~~G~~v~~ 241 (324)
T cd08291 223 ---------GLTGQILLAMPYGSTLYVY 241 (324)
T ss_pred ---------HHHHHHHHhhCCCCEEEEE
Confidence 2234456778999998764
No 478
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=29.76 E-value=2.6e+02 Score=26.22 Aligned_cols=96 Identities=18% Similarity=0.111 Sum_probs=51.0
Q ss_pred CCeEEEEecc-ccHHHHHHHhhCCCC-eEEEEchHHHHHHHHHHcCCCcEEEEEc-cccc---hhhhhhccCCCcEeEEE
Q 021567 126 QPLVVDIGSG-NGLFLLGMARKRKDL-NFLGLELVTHCRDSLQLSGITNGYFIAT-NATS---TFRSIVASYPGKLILVS 199 (311)
Q Consensus 126 ~~~vLDIGcG-tG~~~~~lA~~~p~~-~vvGiDi~~~a~~~a~~~~~~Nv~f~~~-Da~~---ll~~~~~~~~~s~D~V~ 199 (311)
+..+|=.|+| .|..+..+|+.. +. ++++++-++.-.+.+++.|.+.+.-... +..+ .+.... ....+|.++
T Consensus 178 g~~vlI~g~g~vG~~~~~lak~~-G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~--~~~~~d~vi 254 (361)
T cd08231 178 GDTVVVQGAGPLGLYAVAAAKLA-GARRVIVIDGSPERLELAREFGADATIDIDELPDPQRRAIVRDIT--GGRGADVVI 254 (361)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHcCCCeEEcCcccccHHHHHHHHHHh--CCCCCcEEE
Confidence 4445555653 244456667765 45 8999987665555555556543221111 1100 111111 223577664
Q ss_pred EeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 200 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 200 i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
-. ... ...+....+.|+++|+++..
T Consensus 255 d~-~g~-------------~~~~~~~~~~l~~~G~~v~~ 279 (361)
T cd08231 255 EA-SGH-------------PAAVPEGLELLRRGGTYVLV 279 (361)
T ss_pred EC-CCC-------------hHHHHHHHHHhccCCEEEEE
Confidence 32 211 24567778999999999864
No 479
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=28.67 E-value=2.3e+02 Score=26.04 Aligned_cols=38 Identities=13% Similarity=0.128 Sum_probs=24.4
Q ss_pred cEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEeC
Q 021567 194 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 240 (311)
Q Consensus 194 s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~tD 240 (311)
..|.|+...|++. . +...++.++.+.++|+..+...|.
T Consensus 81 ~aD~Vi~avpe~~----~-----~k~~~~~~l~~~~~~~~il~~~tS 118 (288)
T PRK09260 81 DADLVIEAVPEKL----E-----LKKAVFETADAHAPAECYIATNTS 118 (288)
T ss_pred CCCEEEEeccCCH----H-----HHHHHHHHHHhhCCCCcEEEEcCC
Confidence 3577777666541 1 224677788888999887655443
No 480
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=28.26 E-value=4e+02 Score=25.09 Aligned_cols=96 Identities=9% Similarity=0.050 Sum_probs=50.1
Q ss_pred CCeEEEEecc-ccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcE-EEEEc--cccchhhhhhccCCCcEeEEEEe
Q 021567 126 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNG-YFIAT--NATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 126 ~~~vLDIGcG-tG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv-~f~~~--Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
+..+|=+|+| .|..+..+|+...-..+++++.++.-.+.+.+.|.+.+ ..... +....+.... .+.+|.++-.
T Consensus 184 g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~l~~~~---~~~~d~vid~ 260 (365)
T cd05279 184 GSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECINPRDQDKPIVEVLTEMT---DGGVDYAFEV 260 (365)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCeecccccccchHHHHHHHHh---CCCCcEEEEC
Confidence 4455556663 23344556666533358888876655555555554321 11111 1111112212 2457777532
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHhccc-CCeEEEEE
Q 021567 202 CPNPDFNRPEHRWRMVQRSLVEAVSDLLV-HDGKVFLQ 238 (311)
Q Consensus 202 fpdP~~k~~h~krRl~~~~~l~~i~rvLk-pGG~l~~~ 238 (311)
... ...+....+.|+ ++|.++..
T Consensus 261 ~g~--------------~~~~~~~~~~l~~~~G~~v~~ 284 (365)
T cd05279 261 IGS--------------ADTLKQALDATRLGGGTSVVV 284 (365)
T ss_pred CCC--------------HHHHHHHHHHhccCCCEEEEE
Confidence 211 256777888899 99998864
No 481
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=27.81 E-value=2.7e+02 Score=25.78 Aligned_cols=95 Identities=12% Similarity=0.060 Sum_probs=52.1
Q ss_pred CCeEEEEec-cccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEc--cccchhhhhhccCCCcEeEEEEeC
Q 021567 126 QPLVVDIGS-GNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIAT--NATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 126 ~~~vLDIGc-GtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~--Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
+..+|=.|| +.|..+..+|+.. +.++++++-+..-.+.+.+.|.+.+--.+. +....+.... .+.+|.++-..
T Consensus 166 ~~~vlV~g~g~vg~~~~~~a~~~-G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~---~~~~d~vi~~~ 241 (345)
T cd08260 166 GEWVAVHGCGGVGLSAVMIASAL-GARVIAVDIDDDKLELARELGAVATVNASEVEDVAAAVRDLT---GGGAHVSVDAL 241 (345)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCeEEEEeCCHHHHHHHHHhCCCEEEccccchhHHHHHHHHh---CCCCCEEEEcC
Confidence 345555565 4555667777765 678888876655555555555532221121 2111111111 22678765331
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 203 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 203 pdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
.. ...+....+.|+++|.++..
T Consensus 242 g~--------------~~~~~~~~~~l~~~g~~i~~ 263 (345)
T cd08260 242 GI--------------PETCRNSVASLRKRGRHVQV 263 (345)
T ss_pred CC--------------HHHHHHHHHHhhcCCEEEEe
Confidence 11 24577788999999988753
No 482
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=27.54 E-value=3.6e+02 Score=24.72 Aligned_cols=37 Identities=14% Similarity=0.177 Sum_probs=24.0
Q ss_pred cEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEEe
Q 021567 194 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 239 (311)
Q Consensus 194 s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t 239 (311)
..|.|+...|+.- + +.+.+++++...++|+..+...|
T Consensus 83 ~aD~Vieavpe~~----~-----~k~~~~~~l~~~~~~~~ii~s~t 119 (292)
T PRK07530 83 DCDLVIEAATEDE----T-----VKRKIFAQLCPVLKPEAILATNT 119 (292)
T ss_pred CCCEEEEcCcCCH----H-----HHHHHHHHHHhhCCCCcEEEEcC
Confidence 4577777655431 1 22477788889999988776444
No 483
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=27.00 E-value=4.1e+02 Score=26.80 Aligned_cols=107 Identities=9% Similarity=-0.049 Sum_probs=55.3
Q ss_pred cccHHHHHHHhh--CCCCeEEEEchHHHHHHHHHHc----CCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCC
Q 021567 135 GNGLFLLGMARK--RKDLNFLGLELVTHCRDSLQLS----GITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFN 208 (311)
Q Consensus 135 GtG~~~~~lA~~--~p~~~vvGiDi~~~a~~~a~~~----~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k 208 (311)
|.|.++..||.+ ..+..|++.|......+.+.+. +. ++. ...+..++... -...|.|++..|++.
T Consensus 8 GLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~-~i~-~~~s~~e~v~~-----l~~~d~Iil~v~~~~-- 78 (470)
T PTZ00142 8 GLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNT-RVK-GYHTLEELVNS-----LKKPRKVILLIKAGE-- 78 (470)
T ss_pred eEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCC-cce-ecCCHHHHHhc-----CCCCCEEEEEeCChH--
Confidence 334444444443 2356899999876655544332 21 222 23343333211 012466666655542
Q ss_pred CchhhhhhhHHHHHHHHHhcccCCeEEEEEe-CcHHHHHHHHHHHHhcCCC
Q 021567 209 RPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS-DIEEVMLRMKQQFLEYGKG 258 (311)
Q Consensus 209 ~~h~krRl~~~~~l~~i~rvLkpGG~l~~~t-D~~~~~~~~~~~l~~~g~~ 258 (311)
.-+.+++++...|++|-.++-.+ -+..-.....+.+.+.|..
T Consensus 79 --------~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~ 121 (470)
T PTZ00142 79 --------AVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGIL 121 (470)
T ss_pred --------HHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence 12467788888898887665432 2233344445666676654
No 484
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=26.44 E-value=1.6e+02 Score=28.24 Aligned_cols=86 Identities=12% Similarity=0.193 Sum_probs=49.2
Q ss_pred CCeEEEEeccccHHHHHHHhhCC--CCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRK--DLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p--~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
+.++-=| |.|.++.+.|++.. +.+++..|.... .+..+ . .+..++. ..+++ ..-|.|++++|
T Consensus 146 gktvGIi--G~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~~-~--~~~~y~~--l~ell--------~~sDii~l~~P 209 (324)
T COG1052 146 GKTLGII--GLGRIGQAVARRLKGFGMKVLYYDRSPN-PEAEK-E--LGARYVD--LDELL--------AESDIISLHCP 209 (324)
T ss_pred CCEEEEE--CCCHHHHHHHHHHhcCCCEEEEECCCCC-hHHHh-h--cCceecc--HHHHH--------HhCCEEEEeCC
Confidence 3444444 67788888887732 567788876654 11111 1 1234433 33332 24589999988
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHhcccCCeEEE
Q 021567 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF 236 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~ 236 (311)
.-+ .-+.+++.+.| ..||||++|+
T Consensus 210 lt~-----~T~hLin~~~l----~~mk~ga~lV 233 (324)
T COG1052 210 LTP-----ETRHLINAEEL----AKMKPGAILV 233 (324)
T ss_pred CCh-----HHhhhcCHHHH----HhCCCCeEEE
Confidence 543 12235555554 5689998876
No 485
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=26.04 E-value=68 Score=29.38 Aligned_cols=47 Identities=17% Similarity=0.126 Sum_probs=37.2
Q ss_pred hhcCCCCCCeEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHH
Q 021567 119 AAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL 165 (311)
Q Consensus 119 ~~f~~~~~~~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a 165 (311)
+.+....+...+|.-.|.|..+..+.+++|+..++++|..+.|.+.+
T Consensus 37 ~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La 83 (303)
T KOG2782|consen 37 DILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLA 83 (303)
T ss_pred HHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHH
Confidence 33433357899999999999999999999999999999655444443
No 486
>PRK07102 short chain dehydrogenase; Provisional
Probab=25.95 E-value=3e+02 Score=23.94 Aligned_cols=55 Identities=15% Similarity=0.035 Sum_probs=34.3
Q ss_pred eEEEEeccccHHHHHHHhhC--CCCeEEEEchHHHHH----HHHHHcCCCcEEEEEccccch
Q 021567 128 LVVDIGSGNGLFLLGMARKR--KDLNFLGLELVTHCR----DSLQLSGITNGYFIATNATST 183 (311)
Q Consensus 128 ~vLDIGcGtG~~~~~lA~~~--p~~~vvGiDi~~~a~----~~a~~~~~~Nv~f~~~Da~~l 183 (311)
++|=.| |+|.++..++++. .+.+|++++...... +.....+..++.++.+|+.+.
T Consensus 3 ~vlItG-as~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~ 63 (243)
T PRK07102 3 KILIIG-ATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDT 63 (243)
T ss_pred EEEEEc-CCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCCh
Confidence 467677 4566777666552 256888888643322 222223335899999998875
No 487
>PF01358 PARP_regulatory: Poly A polymerase regulatory subunit; InterPro: IPR000176 This family contains viral proteins that are bifunctional, acting as both an mRNA cap-specific RNA 2'-O-methyltransferase, which methylates the ribose 2' OH group of the first transcribed nucleotide, thereby producing a 2'-o-methylpurine cap and a poly(A) polymerase processivity factor which binds to Poly(A) but has no catalytic activity. The structure of this protein is known [].; GO: 0004483 mRNA (nucleoside-2'-O-)-methyltransferase activity, 0006370 mRNA capping, 0006397 mRNA processing; PDB: 4DCG_A 1B42_A 3ERC_A 1AV6_A 2VP3_A 1JTF_A 1JTE_A 1VP3_A 3ER9_A 1P39_A ....
Probab=25.92 E-value=50 Score=31.20 Aligned_cols=51 Identities=24% Similarity=0.236 Sum_probs=33.8
Q ss_pred CeEEEEeccccHHHHHHHhhCCCCe----EEEEchHHHHHHHHHHcCCCcEEEEEccc
Q 021567 127 PLVVDIGSGNGLFLLGMARKRKDLN----FLGLELVTHCRDSLQLSGITNGYFIATNA 180 (311)
Q Consensus 127 ~~vLDIGcGtG~~~~~lA~~~p~~~----vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da 180 (311)
.+|+=||++.|.++..|++.+|+.. ++.+|-...+.. -.++++|.+++.=.
T Consensus 60 ~~VVYiGsApG~Hi~~L~~lf~~~~~~i~wvLiDp~~f~~~---l~~l~~v~l~~~ff 114 (294)
T PF01358_consen 60 VTVVYIGSAPGTHIPFLFDLFPDLKVPIKWVLIDPRPFCIS---LEELSNVTLIQRFF 114 (294)
T ss_dssp EEEEEES-SS-HHHHHHHHHHHHTT--EEEEEEESS---GG---GTT-TTEEEEES--
T ss_pred eEEEEecCCCcchHHHHHHHHHhcCCceEEEEECCcchhhh---hcccCcEEeehhhC
Confidence 6899999999999999999988755 999997665432 23456677766433
No 488
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=25.72 E-value=3.6e+02 Score=28.22 Aligned_cols=54 Identities=11% Similarity=0.046 Sum_probs=36.6
Q ss_pred eEEEEeccccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEe
Q 021567 128 LVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 201 (311)
Q Consensus 128 ~vLDIGcGtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~ 201 (311)
+|| +-||+|--+-.+++. +..+.++++|++ ++..++|+.+. +.....+|.++..
T Consensus 508 KIL-vaCGsGiGTStmva~-------------kIkk~Lke~GI~-veV~~~~Vsev-----~s~~~~aDIIVtt 561 (602)
T PRK09548 508 RIL-AVCGQGQGSSMMMKM-------------KIKKYLDKRGIP-IIMDSCAVNDY-----KGKLETIDIIVCS 561 (602)
T ss_pred EEE-EECCCCchHHHHHHH-------------HHHHHHHHcCCC-eEEEEechHhC-----cccCCCCCEEEEc
Confidence 444 889999888777654 233445677874 78889998776 3234567877665
No 489
>PF06897 DUF1269: Protein of unknown function (DUF1269); InterPro: IPR009200 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain two or more transmembrane segments.
Probab=25.62 E-value=1.1e+02 Score=24.23 Aligned_cols=41 Identities=10% Similarity=0.168 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcccCCeEEEEEeCcHHHHHHHHHHHHhcCCC
Q 021567 218 QRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG 258 (311)
Q Consensus 218 ~~~~l~~i~rvLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~ 258 (311)
+.+|++++.+.|+||....|.--.+...+...+.+..++-.
T Consensus 41 ~d~~~~ev~~~L~~GssAl~~lv~~~~~d~v~~~l~~~gg~ 81 (102)
T PF06897_consen 41 DDEFIKEVGEALKPGSSALFLLVDEATEDKVDAALRKFGGK 81 (102)
T ss_pred CHHHHHHHHhhcCCCceEEEEEeccCCHHHHHHHHHhcCCE
Confidence 36899999999999965554322233456677788887754
No 490
>PRK07326 short chain dehydrogenase; Provisional
Probab=25.19 E-value=2.2e+02 Score=24.62 Aligned_cols=57 Identities=9% Similarity=-0.041 Sum_probs=35.6
Q ss_pred CCeEEEEeccccHHHHHHHhhC--CCCeEEEEchHHHHHHHHHH-cC-CCcEEEEEccccch
Q 021567 126 QPLVVDIGSGNGLFLLGMARKR--KDLNFLGLELVTHCRDSLQL-SG-ITNGYFIATNATST 183 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~--p~~~vvGiDi~~~a~~~a~~-~~-~~Nv~f~~~Da~~l 183 (311)
+..+|=+| |+|.++..++++. .+.++++++......+.+.. .. ...+.++.+|+.+.
T Consensus 6 ~~~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~ 66 (237)
T PRK07326 6 GKVALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDE 66 (237)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCH
Confidence 46788888 5777777776642 36689999864433322211 11 14688889888764
No 491
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=25.09 E-value=3.4e+02 Score=26.93 Aligned_cols=87 Identities=14% Similarity=0.122 Sum_probs=51.7
Q ss_pred CCCeEEEEeccc-cHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCC
Q 021567 125 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203 (311)
Q Consensus 125 ~~~~vLDIGcGt-G~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fp 203 (311)
.+.+|+=+|||. |......++.. +.+++.+|..+.....+...|.. .. +..+. + ...|.|+..-.
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~~R~~~A~~~G~~---~~--~~~e~----v----~~aDVVI~atG 266 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDPICALQAAMEGYE---VM--TMEEA----V----KEGDIFVTTTG 266 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECChhhHHHHHhcCCE---Ec--cHHHH----H----cCCCEEEECCC
Confidence 467899999997 44444455544 56899999876655666655542 11 11121 2 13476654311
Q ss_pred CCCCCCchhhhhhhHHHHHH-HHHhcccCCeEEEEEe
Q 021567 204 NPDFNRPEHRWRMVQRSLVE-AVSDLLVHDGKVFLQS 239 (311)
Q Consensus 204 dP~~k~~h~krRl~~~~~l~-~i~rvLkpGG~l~~~t 239 (311)
. +..+. +..+.+++||.+....
T Consensus 267 ~--------------~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 267 N--------------KDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred C--------------HHHHHHHHHhcCCCCcEEEEeC
Confidence 1 23444 3478999999997653
No 492
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=24.73 E-value=1.1e+02 Score=21.63 Aligned_cols=32 Identities=16% Similarity=0.008 Sum_probs=27.5
Q ss_pred cccCCeEEEEEeCcHHHHHHHHHHHHhcCCCc
Q 021567 228 LLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK 259 (311)
Q Consensus 228 vLkpGG~l~~~tD~~~~~~~~~~~l~~~g~~~ 259 (311)
-+.+|+.+.+.+|+..-.+.+...+++.|+..
T Consensus 21 ~~~~g~~l~v~~d~~~s~~~i~~~~~~~G~~~ 52 (67)
T cd03421 21 ELEAGGEIEVLVDNEVAKENVSRFAESRGYEV 52 (67)
T ss_pred hcCCCCEEEEEEcChhHHHHHHHHHHHcCCEE
Confidence 57899999999999887788888889999875
No 493
>PHA03108 poly(A) polymerase small subunit; Provisional
Probab=24.64 E-value=81 Score=29.74 Aligned_cols=50 Identities=16% Similarity=0.223 Sum_probs=37.8
Q ss_pred CCeEEEEeccccHHHHHHHhhCCC----CeEEEEchHHHHHHHHHHcCCCcEEEEEc
Q 021567 126 QPLVVDIGSGNGLFLLGMARKRKD----LNFLGLELVTHCRDSLQLSGITNGYFIAT 178 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~p~----~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~ 178 (311)
+..||=||+|.|.++..|...+++ .+++-+|-...+.. ..++.||+++..
T Consensus 61 g~~VVYiGSApG~HI~~L~~lf~~lg~~ikw~LiDp~~h~~~---Le~l~nV~Li~~ 114 (300)
T PHA03108 61 GSTIVYIGSAPGTHIRYLRDHFYSLGVVIKWMLIDGRKHDPI---LNGLRDVTLVTR 114 (300)
T ss_pred CceEEEecCCCCccHHHHHHHHHhcCCCeEEEEECCCcccHh---hcCCCcEEeeHh
Confidence 459999999999999999988775 58999996554422 345567777654
No 494
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=24.55 E-value=4.2e+02 Score=25.11 Aligned_cols=105 Identities=14% Similarity=0.036 Sum_probs=52.6
Q ss_pred CCeEEEEecc-ccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCC
Q 021567 126 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 204 (311)
Q Consensus 126 ~~~vLDIGcG-tG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpd 204 (311)
+..||=.||| .|..+..+|+......++++|..+...+.+++.|. . .+..+-.+....+....+..+|.++-....
T Consensus 177 g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~g~-~--~v~~~~~~~~~~i~~~~~~~~d~v~d~~g~ 253 (375)
T cd08282 177 GDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGA-I--PIDFSDGDPVEQILGLEPGGVDRAVDCVGY 253 (375)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC-e--EeccCcccHHHHHHHhhCCCCCEEEECCCC
Confidence 3444447776 36667777776533378889877666666665553 1 121111111111111112346766432211
Q ss_pred C-CCCCchhhhhhhHHHHHHHHHhcccCCeEEEE
Q 021567 205 P-DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237 (311)
Q Consensus 205 P-~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~ 237 (311)
+ ..+.. +.-....+.++.++|+++|.+..
T Consensus 254 ~~~~~~~----~~~~~~~~~~~~~~l~~~g~~~~ 283 (375)
T cd08282 254 EARDRGG----EAQPNLVLNQLIRVTRPGGGIGI 283 (375)
T ss_pred ccccccc----ccchHHHHHHHHHHhhcCcEEEE
Confidence 1 00000 00012457888999999999864
No 495
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=23.84 E-value=4.8e+02 Score=24.10 Aligned_cols=91 Identities=18% Similarity=0.177 Sum_probs=48.7
Q ss_pred CeEEEEec-cccHHHHHHHhhCCCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeCCCC
Q 021567 127 PLVVDIGS-GNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP 205 (311)
Q Consensus 127 ~~vLDIGc-GtG~~~~~lA~~~p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP 205 (311)
..+|=.|| +.|..+..+|+.. +..++.++.+....+.+...+.+.+ +...-...... ....+|.++-..+.+
T Consensus 171 ~~vlV~g~g~vG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~~g~~~v--i~~~~~~~~~~----~~~~~d~v~~~~g~~ 243 (337)
T cd05283 171 KRVGVVGIGGLGHLAVKFAKAL-GAEVTAFSRSPSKKEDALKLGADEF--IATKDPEAMKK----AAGSLDLIIDTVSAS 243 (337)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHcCCcEE--ecCcchhhhhh----ccCCceEEEECCCCc
Confidence 33333666 3455566667765 5688888876655555555554322 11111111110 134577776432221
Q ss_pred CCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 206 DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 206 ~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
..++.+.+.|+++|.+...
T Consensus 244 --------------~~~~~~~~~l~~~G~~v~~ 262 (337)
T cd05283 244 --------------HDLDPYLSLLKPGGTLVLV 262 (337)
T ss_pred --------------chHHHHHHHhcCCCEEEEE
Confidence 2356677888998888754
No 496
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=23.70 E-value=4.9e+02 Score=23.84 Aligned_cols=36 Identities=14% Similarity=0.137 Sum_probs=22.8
Q ss_pred cEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 194 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 194 s~D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
..|.|+...|... . +...+++++...++++-.+...
T Consensus 84 ~aDlVieavpe~~----~-----~k~~~~~~l~~~~~~~~ii~sn 119 (287)
T PRK08293 84 DADLVIEAVPEDP----E-----IKGDFYEELAKVAPEKTIFATN 119 (287)
T ss_pred CCCEEEEeccCCH----H-----HHHHHHHHHHhhCCCCCEEEEC
Confidence 4578877765431 1 2247788888888887766443
No 497
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=23.59 E-value=2.7e+02 Score=26.50 Aligned_cols=71 Identities=17% Similarity=0.058 Sum_probs=38.0
Q ss_pred CeEEEEeccc-cHHHHHHHhhCCCCeEEEE-ch--HHHHHHHHHHcCCCcEEEEEccccchhhhhhccCCCcEeEEEEeC
Q 021567 127 PLVVDIGSGN-GLFLLGMARKRKDLNFLGL-EL--VTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQC 202 (311)
Q Consensus 127 ~~vLDIGcGt-G~~~~~lA~~~p~~~vvGi-Di--~~~a~~~a~~~~~~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~f 202 (311)
-++-=||||. |...+....+.|+..++++ |+ ...+++.+++.|. .....+.+.++.. + .-..+|.|++.-
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi---~~~~~~ie~LL~~--~-~~~dIDiVf~AT 78 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGV---ATSAEGIDGLLAM--P-EFDDIDIVFDAT 78 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCC---CcccCCHHHHHhC--c-CCCCCCEEEECC
Confidence 3577799887 6653333334677766643 33 3345555655554 3334566665431 0 014588887763
Q ss_pred C
Q 021567 203 P 203 (311)
Q Consensus 203 p 203 (311)
|
T Consensus 79 ~ 79 (302)
T PRK08300 79 S 79 (302)
T ss_pred C
Confidence 3
No 498
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=23.52 E-value=2.9e+02 Score=24.30 Aligned_cols=57 Identities=7% Similarity=-0.038 Sum_probs=36.1
Q ss_pred CCeEEEEeccccHHHHHHHhhC--CCCeEEEEchHHHHHHHHHHcCCCcEEEEEccccch
Q 021567 126 QPLVVDIGSGNGLFLLGMARKR--KDLNFLGLELVTHCRDSLQLSGITNGYFIATNATST 183 (311)
Q Consensus 126 ~~~vLDIGcGtG~~~~~lA~~~--p~~~vvGiDi~~~a~~~a~~~~~~Nv~f~~~Da~~l 183 (311)
+..+|=.| |+|.++..+++.. .+.+++.+|......+...+.-..++.++.+|+.+.
T Consensus 6 ~~~vlItG-as~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~ 64 (257)
T PRK07067 6 GKVALLTG-AASGIGEAVAERYLAEGARVVIADIKPARARLAALEIGPAAIAVSLDVTRQ 64 (257)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCH
Confidence 34677666 6667777776652 367899998765444443322224688889988664
No 499
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=23.15 E-value=7.3e+02 Score=24.98 Aligned_cols=108 Identities=8% Similarity=-0.044 Sum_probs=55.7
Q ss_pred cccHHHHHHHhh--CCCCeEEEEchHHHHHHHHHHcCC--CcEEEEEccccchhhhhhccCCCcEeEEEEeCCCCCCCCc
Q 021567 135 GNGLFLLGMARK--RKDLNFLGLELVTHCRDSLQLSGI--TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRP 210 (311)
Q Consensus 135 GtG~~~~~lA~~--~p~~~vvGiDi~~~a~~~a~~~~~--~Nv~f~~~Da~~ll~~~~~~~~~s~D~V~i~fpdP~~k~~ 210 (311)
|.|..+..||.+ ..+..+++.|.+....+.+.+.+. .++. ...+..++... -...|.|++..|++.
T Consensus 6 GLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~-~~~s~~e~v~~-----l~~~dvIil~v~~~~---- 75 (467)
T TIGR00873 6 GLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIV-GAYSIEEFVQS-----LERPRKIMLMVKAGA---- 75 (467)
T ss_pred eeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCce-ecCCHHHHHhh-----cCCCCEEEEECCCcH----
Confidence 455566666554 225689999987666665554311 1222 12233333111 123477777666542
Q ss_pred hhhhhhhHHHHHHHHHhcccCCeEEEEEe-CcHHHHHHHHHHHHhcCCC
Q 021567 211 EHRWRMVQRSLVEAVSDLLVHDGKVFLQS-DIEEVMLRMKQQFLEYGKG 258 (311)
Q Consensus 211 h~krRl~~~~~l~~i~rvLkpGG~l~~~t-D~~~~~~~~~~~l~~~g~~ 258 (311)
.-..+++++...|++|-.++=.+ -...-.....+.+.+.|..
T Consensus 76 ------~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~ 118 (467)
T TIGR00873 76 ------PVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGIL 118 (467)
T ss_pred ------HHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCE
Confidence 11467788888888876554322 1222223334456666543
No 500
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=23.13 E-value=4.9e+02 Score=23.91 Aligned_cols=88 Identities=14% Similarity=0.147 Sum_probs=46.5
Q ss_pred EEEEeccccHHHHHHHhh--CCCCeEEEEchHHHHHHHHHHcCCC-----------cEEEEEccccchhhhhhccCCCcE
Q 021567 129 VVDIGSGNGLFLLGMARK--RKDLNFLGLELVTHCRDSLQLSGIT-----------NGYFIATNATSTFRSIVASYPGKL 195 (311)
Q Consensus 129 vLDIGcGtG~~~~~lA~~--~p~~~vvGiDi~~~a~~~a~~~~~~-----------Nv~f~~~Da~~ll~~~~~~~~~s~ 195 (311)
|.=||+ |..+..+|.. ..+..++.+|......+.++..+.. ++.. ..|..+. ....
T Consensus 4 I~iiG~--G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------~~~~ 72 (325)
T PRK00094 4 IAVLGA--GSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA-TTDLAEA--------LADA 72 (325)
T ss_pred EEEECC--CHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE-eCCHHHH--------HhCC
Confidence 444565 5555555443 2245788888765555555443321 1111 1121111 1245
Q ss_pred eEEEEeCCCCCCCCchhhhhhhHHHHHHHHHhcccCCeEEEEE
Q 021567 196 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238 (311)
Q Consensus 196 D~V~i~fpdP~~k~~h~krRl~~~~~l~~i~rvLkpGG~l~~~ 238 (311)
|.|++..|++ ..+.+++.+...++++..++..
T Consensus 73 D~vi~~v~~~-----------~~~~v~~~l~~~~~~~~~vi~~ 104 (325)
T PRK00094 73 DLILVAVPSQ-----------ALREVLKQLKPLLPPDAPIVWA 104 (325)
T ss_pred CEEEEeCCHH-----------HHHHHHHHHHhhcCCCCEEEEE
Confidence 8888776542 1146777888888888765543
Done!