RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 021567
(311 letters)
>gnl|CDD|234649 PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.
Length = 202
Score = 87.5 bits (218), Expect = 1e-20
Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 7/154 (4%)
Query: 107 LDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLE----LVTHCR 162
R P +DW+ + + A P+ ++IG G G FL+ MA+ D+NF+G+E V
Sbjct: 23 WPRLSPAPLDWAELFGNDA-PIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKAL 81
Query: 163 DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLV 222
++ G+TN + +A + G L + + P+P + H+ R+VQ +
Sbjct: 82 KKIEEEGLTNLRLLCGDAVEVLLDMFP--DGSLDRIYLNFPDPWPKKRHHKRRLVQPEFL 139
Query: 223 EAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG 256
+ L G++ +D E M + G
Sbjct: 140 ALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEG 173
>gnl|CDD|217012 pfam02390, Methyltransf_4, Putative methyltransferase. This is a
family of putative methyltransferases. The aligned
region contains the GXGXG S-AdoMet binding site
suggesting a putative methyltransferase activity.
Length = 198
Score = 87.4 bits (217), Expect = 1e-20
Identities = 51/202 (25%), Positives = 92/202 (45%), Gaps = 21/202 (10%)
Query: 113 FDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLE----LVTHCRDSL-QL 167
F +DW A + + QPL ++IG G G FL+ MA+K D F+G+E V + L
Sbjct: 9 FTLDWQALFGNE-QPLFLEIGCGMGDFLVAMAKKNPDKLFIGIEIRVPGVDKALKKIIAL 67
Query: 168 SGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSD 227
G+ N + +A ++ G L + I P+P + H+ R++Q ++ +
Sbjct: 68 RGLQNLRILCGDAMKLLPNLFP--DGSLQKIFINFPDPWPKKRHHKRRLLQPEFLKEYAR 125
Query: 228 LLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGEN---SFGV 284
+L G + L +D+EE M + E+ + +L + L E+ +
Sbjct: 126 VLKPGGVLHLATDVEEYFEWMLEHLSEHPLFERIL----------ESTDLNEDPITDLRI 175
Query: 285 RSDWEQHVIDRGAPMYRLMLSK 306
+++EQ V G P++ L+ K
Sbjct: 176 STEYEQKVQRLGGPIFELIFIK 197
>gnl|CDD|223298 COG0220, COG0220, Predicted S-adenosylmethionine-dependent
methyltransferase [General function prediction only].
Length = 227
Score = 82.3 bits (204), Expect = 1e-18
Identities = 49/202 (24%), Positives = 80/202 (39%), Gaps = 19/202 (9%)
Query: 115 IDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGI 170
DWSA + + P+V++IG G G FL+ MA+K + NFLG+E+ V ++ G+
Sbjct: 38 GDWSALFGNNNAPIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGL 97
Query: 171 TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLV 230
N + +A ++ G L + I P+P + H+ R+ Q ++ + L
Sbjct: 98 KNLRLLCGDAVEVLDYLIP--DGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLK 155
Query: 231 HDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDE---CDTKTNQGGWLGENSFGVRSD 287
G + +D EE M + LE+ +D N E F
Sbjct: 156 PGGVLHFATDNEEYFEWMMLEVLEHPPFLKFESEDLHYNLPPPDNNPVTEYEQKF----- 210
Query: 288 WEQHVIDRGAPMYRLMLSKPSC 309
G P+Y L K
Sbjct: 211 -----RRLGHPVYDLEFIKKKG 227
>gnl|CDD|161703 TIGR00091, TIGR00091, tRNA (guanine-N(7)-)-methyltransferase. This
predicted S-adenosylmethionine-dependent
methyltransferase is found in a single copy in most
Bacteria. It is also found, with a short amino-terminal
extension in eukaryotes. Its function is unknown. In E.
coli, this protein flanks the DNA repair protein MutY,
also called micA [Protein synthesis, tRNA and rRNA base
modification].
Length = 194
Score = 73.5 bits (181), Expect = 1e-15
Identities = 41/198 (20%), Positives = 81/198 (40%), Gaps = 20/198 (10%)
Query: 116 DWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGIT 171
D++ + PL ++IG G G FL+ MA++ D NFLG+E+ V + G+
Sbjct: 8 DFATVF-GNKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK 66
Query: 172 NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVH 231
N + + +A G L V + P+P + ++ R+ Q ++ +++L
Sbjct: 67 NLHVLCGDANELLDKFFPD--GSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKK 124
Query: 232 DGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVR---SDW 288
G + ++D E + M + E T++ L + +++
Sbjct: 125 GGVIHFKTDNEPLFEDMLKVLSEND----------LFENTSKSTDLNNSPLSRPRNMTEY 174
Query: 289 EQHVIDRGAPMYRLMLSK 306
EQ G P++ L +
Sbjct: 175 EQRFERLGHPVFDLCFER 192
>gnl|CDD|178602 PLN03034, PLN03034, phosphoglycerate kinase; Provisional.
Length = 481
Score = 45.8 bits (108), Expect = 2e-05
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 25 QNVIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSSIFGL 83
Q VIW GP+ F F +++ G + L ++S + G + A+ KV +
Sbjct: 391 QTVIWNGPMGVFEFE-KFAVGTEAVAKKLAELSGKGVTTIIGGGDSVAAVEKVGVADVMS 449
Query: 84 NMVESGSAVWEFLKGRMLPGVSALDRAFP 112
++ G A E L+G+ LPGV ALD A P
Sbjct: 450 HISTGGGASLELLEGKELPGVVALDEATP 478
>gnl|CDD|165923 PLN02282, PLN02282, phosphoglycerate kinase.
Length = 401
Score = 37.6 bits (87), Expect = 0.005
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 25 QNVIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSSIFGL 83
+ +IW GP+ F F +++ G + L ++S + G + A+ KV +
Sbjct: 316 KTIIWNGPMGVFEFE-KFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMS 374
Query: 84 NMVESGSAVWEFLKGRMLPGVSALDRA 110
++ G A E L+G+ LPGV ALD A
Sbjct: 375 HISTGGGASLELLEGKPLPGVLALDDA 401
>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain. This family
contains methyltransferase domains.
Length = 117
Score = 35.1 bits (81), Expect = 0.009
Identities = 28/118 (23%), Positives = 44/118 (37%), Gaps = 13/118 (11%)
Query: 127 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGITNGYFIATNATS 182
V+D G+G+G FLL AR D +G+EL R L L+G+ +
Sbjct: 2 DRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRV---VVG 58
Query: 183 TFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRS---LVEAVSDLLVHDGKVFL 237
R ++ G LV NP + + + + A LL G + +
Sbjct: 59 DARELLELPDGSFDLV---LGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLVV 113
>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain. Protein in
this family function as methyltransferases.
Length = 104
Score = 34.6 bits (80), Expect = 0.011
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 129 VVDIGSGNGLFLLGMARKRKDLNFLGLEL 157
V+DIG G G + +AR G++L
Sbjct: 5 VLDIGCGTGSLAIELARLFPGARVTGVDL 33
>gnl|CDD|173310 PTZ00005, PTZ00005, phosphoglycerate kinase; Provisional.
Length = 417
Score = 36.6 bits (85), Expect = 0.015
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 16/98 (16%)
Query: 18 KRLLLQLQNVIWVGPV-KFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG-----SMA-- 69
+L+ + ++W GP F ++ G+ + + K ++ +T++G S+
Sbjct: 325 AEAILRAKTIVWNGPQGVFEMP-NFAKGSIAMLDAVVKATEKGA-ITIVGGGDTASLVEK 382
Query: 70 CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSAL 107
A KVS G G A E L+G+ LPGV AL
Sbjct: 383 TGAANKVSHVSTG------GGASLELLEGKELPGVVAL 414
>gnl|CDD|238195 cd00318, Phosphoglycerate_kinase, Phosphoglycerate kinase (PGK) is
a monomeric enzyme which catalyzes the transfer of the
high-energy phosphate group of 1,3-bisphosphoglycerate
to ADP, forming ATP and 3-phosphoglycerate. This
reaction represents the first of the two substrate-level
phosphorylation events in the glycolytic pathway.
Substrate-level phosphorylation is defined as production
of ATP by a process, which is catalyzed by
water-soluble enzymes in the cytosol; not involving
membranes and ion gradients. .
Length = 397
Score = 34.9 bits (81), Expect = 0.045
Identities = 22/97 (22%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 18 KRLLLQLQNVIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMACKAI 73
++ + + ++W GP+ F F ++ G + + ++ ++IG + A
Sbjct: 306 AEVIRKAKTIVWNGPMGVFEFP-AFAKGTKAIADAIAAATKAGA-FSIIGGGDTAAAAEK 363
Query: 74 AKVSSSIFGLNMVES-GSAVWEFLKGRMLPGVSALDR 109
++ I + V + G A E L+G+ LPGV+AL+
Sbjct: 364 FGLADKI---SHVSTGGGASLELLEGKELPGVAALEE 397
>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 97
Score = 30.0 bits (68), Expect = 0.43
Identities = 17/110 (15%), Positives = 40/110 (36%), Gaps = 18/110 (16%)
Query: 129 VVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGITNGYFIATNATSTF 184
++D+G G G +L + + G+++ + ++ L+ G + +A
Sbjct: 1 ILDLGCGTG-RVLRALARAGPSSVTGVDISKEALELAKERLRDKGPKVRFVVA-----DA 54
Query: 185 RSI-VASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDG 233
R + L++ C ++ R+L+ + LL G
Sbjct: 55 RDLPFEEGSFDLVI----CAGLSL---DYLSPKQLRALLREAARLLRPGG 97
>gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain. This domain is
found in ribosomal RNA small subunit methyltransferase C
as well as other methyltransferases .
Length = 170
Score = 30.6 bits (70), Expect = 0.55
Identities = 32/151 (21%), Positives = 58/151 (38%), Gaps = 31/151 (20%)
Query: 95 FLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRK------ 148
F GR+ G L P + V+D+G G G+ +A++
Sbjct: 11 FSHGRLDIGSRLLLSHLPKPLGGK----------VLDLGCGYGVLGAALAKRSPDLEVTM 60
Query: 149 -DLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKL-ILVSIQCPNPD 206
D+N LE R +L +G+ NG ++ S PGK +++S NP
Sbjct: 61 VDINARALES---ARANLAANGLENGEVFWSDLYSAVE------PGKFDLIIS----NPP 107
Query: 207 FNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237
F+ + V + + + L G++++
Sbjct: 108 FHAGKATDYDVAQRFIAGAARHLKPGGELWI 138
>gnl|CDD|223204 COG0126, Pgk, 3-phosphoglycerate kinase [Carbohydrate transport and
metabolism].
Length = 395
Score = 31.4 bits (72), Expect = 0.59
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 22/96 (22%)
Query: 27 VIWVGPVK-FRFSSQYSNGASKLTGMLCK-VSQGTCNVTVIG---SMACKAIAKVSSSIF 81
++W GP+ F F ++ G T + K +++ + ++IG + A AI K
Sbjct: 312 IVWNGPMGVFEFE-NFAKG----TEEVAKAIAKSSGAFSIIGGGDTAA--AIDK-----L 359
Query: 82 GLNMVES-----GSAVWEFLKGRMLPGVSALDRAFP 112
GL S G A EFL+G+ LPGV AL+ +
Sbjct: 360 GLADKISHISTGGGASLEFLEGKELPGVEALEESAK 395
>gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function
prediction only].
Length = 248
Score = 31.1 bits (71), Expect = 0.69
Identities = 31/166 (18%), Positives = 62/166 (37%), Gaps = 34/166 (20%)
Query: 129 VVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGIT-NGYFI------- 176
++D+G+GNG L +A++ + +G+E+ + ++ L+ + I
Sbjct: 48 ILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEF 107
Query: 177 -ATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSL---VEAVSDLLVHD 232
++F I+ + P S NP R R + L + A + LL
Sbjct: 108 LKALVFASFDLIICNPPYFKQ-GSRLNENP--LRAIARH-EITLDLEDLIRAAAKLLKPG 163
Query: 233 GKVFLQS------DIEEVMLRM-----KQQFL---EYGKGKLVLVQ 264
G++ +I E++ + QF+ VLV+
Sbjct: 164 GRLAFVHRPERLAEIIELLKSYNLEPKRIQFVYPKIGKAANRVLVE 209
>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain. This family
appears to be have methyltransferase activity.
Length = 151
Score = 30.1 bits (68), Expect = 0.74
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Query: 129 VVDIGSGNGLFLLGMARK-RKDLNFLGL----ELVTHCRDSLQLSGITNGYFIATNATS 182
V+D+G G G +A K +G+ E + +++ + G N FI +
Sbjct: 7 VLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENVEFIQGDIEE 65
>gnl|CDD|233713 TIGR02081, metW, methionine biosynthesis protein MetW. This
protein is found alongside MetX, of the enzyme that
acylates homoserine as a first step toward methionine
biosynthesis, in many species. It appears to act in
methionine biosynthesis but is not fully characterized
[Amino acid biosynthesis, Aspartate family].
Length = 194
Score = 29.3 bits (66), Expect = 2.0
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 124 PAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC 161
P V+D+G G+G LL + R K + G+E+
Sbjct: 12 PPGSRVLDLGCGDGE-LLALLRDEKQVRGYGIEIDQDG 48
>gnl|CDD|237615 PRK14121, PRK14121, tRNA (guanine-N(7)-)-methyltransferase;
Provisional.
Length = 390
Score = 29.5 bits (67), Expect = 2.2
Identities = 32/142 (22%), Positives = 63/142 (44%), Gaps = 15/142 (10%)
Query: 126 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL-------QLSGITNGYFIAT 178
+ ++++IG G+G LL A+ + F+G+E+ T S+ +L + N I
Sbjct: 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHT---PSIEQVLKQIELLNLKNLLIINY 179
Query: 179 NATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238
+A ++ S + I V P +++ HR R++ + +L G + L+
Sbjct: 180 DA-RLLLELLPSNSVEKIFVHFPVP---WDKKPHR-RVISEDFLNEALRVLKPGGTLELR 234
Query: 239 SDIEEVMLRMKQQFLEYGKGKL 260
+D E + FL+ K K+
Sbjct: 235 TDSELYFEFSLELFLKLPKAKI 256
>gnl|CDD|241467 cd13313, PH_NF1, Neurofibromin-1 Pleckstrin homology-like domain.
Neurofibromin (NF1) contains a N-terminal RasGAP domain,
followed by a Sec14-like domain, and a PH domain.
Surprisingly, in neurofibromin the PH domain alone is
not sufficient for phospholipid binding and instead
requires the presence of the Sec-14 domain. The Sec-14
domain has been shown to bind
1-(3-sn-phosphatidyl)-sn-glycerol (PtdGro),
(3-sn-phosphatidyl)-ethanolamine (PtdEtn) and -choline
(PtdCho) and to a minor extent to
(3-sn-phosphatidyl)-l-serine (PtdSer) and
1-(3-sn-phosphatidyl)-d-myo-inositol (PtdIns).
Neurofibromatosis type 1 (also known as von
Recklinghausen neurofibromatosis or NF1) is a genetic
disorder caused by alterations in the tumor suppressor
gene NF1. Hallmark symptoms include neural crest derived
tumors, pigmentation anomalies, bone deformations, and
learning disabilities. Mutations of the tumour
suppressor gene NF1 are responsible for disease
pathogenesis, with 90% of the alterations being nonsense
codons. PH domains have diverse functions, but in
general are involved in targeting proteins to the
appropriate cellular location or in the interaction with
a binding partner. They share little sequence
conservation, but all have a common fold, which is
electrostatically polarized. Less than 10% of PH domains
bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to
the plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains.
PH domains are found in cellular signaling proteins such
as serine/threonine kinase, tyrosine kinases, regulators
of G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid
associated enzymes.
Length = 110
Score = 28.2 bits (63), Expect = 2.2
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 216 MVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQF---LEYGKGKLVLVQDECDT 269
+++ V S LL ++ S+IEEV L QF + G L + +CD
Sbjct: 39 SAEKTKVLGHSVLL---NDIYYASEIEEVCLVDDNQFTLTIANEGGPLTFMHADCDK 92
>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional.
Length = 188
Score = 28.7 bits (65), Expect = 2.6
Identities = 33/158 (20%), Positives = 59/158 (37%), Gaps = 47/158 (29%)
Query: 129 VVDIGSGNGLFLLGMARKRK-----DLNFLGLELVTHCRDSLQLSGITNGY--FIATNAT 181
V+++G+G+G+ + A+ K D+N +E + + +L+ I N I ++
Sbjct: 27 VLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECA---KCNAKLNNIRNNGVEVIRSDLF 83
Query: 182 STFRSIVASYPGKLILVSIQCPNPDFNRP------EHRW--------------RMVQRSL 221
FR +IL FN P E W R V
Sbjct: 84 EPFR----GDKFDVIL---------FNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRF 130
Query: 222 VEAVSDLLVHDGKVF-LQS---DIEEVMLRMKQQFLEY 255
++ V L G++ LQS +EV+ +++ E
Sbjct: 131 LDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEA 168
>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 98
Score = 27.7 bits (62), Expect = 3.2
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 130 VDIGSGNGLFLLGMARKRKDLNFLGLEL 157
+DIG G G L + L + G+++
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDI 28
>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent
methyltransferases (SAM or AdoMet-MTase), class I;
AdoMet-MTases are enzymes that use
S-adenosyl-L-methionine (SAM or AdoMet) as a substrate
for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy). There are at least
five structurally distinct families of AdoMet-MTases,
class I being the largest and most diverse. Within this
class enzymes can be classified by different substrate
specificities (small molecules, lipids, nucleic acids,
etc.) and different target atoms for methylation
(nitrogen, oxygen, carbon, sulfur, etc.).
Length = 107
Score = 27.4 bits (61), Expect = 4.1
Identities = 20/117 (17%), Positives = 34/117 (29%), Gaps = 22/117 (18%)
Query: 129 VVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGITNGYFIATNATSTF 184
V+D+G G G L +A G+++ + R + N + +A
Sbjct: 2 VLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEE-- 58
Query: 185 RSIVASYPGKLILVSIQCPNPDF---NRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238
L + D + P H +E LL G + L
Sbjct: 59 ------------LPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103
>gnl|CDD|220990 pfam11124, Pho86, Inorganic phosphate transporter Pho86. Pho86p is
an ER protein which is produced in response to phosphate
starvation. It is essential for growth when phosphate
levels are limiting. Pho86p is also involved in the
regulation of Pho84p, a high-affinity phosphate
transporter which is localised to the endoplasmic
reticulum (ER) in low phosphate medium. When the level
of phosphate increases Pho84p is transported to the
vacuole. Pho86p is required for packaging of Pho84p in
to COPII vesicles.
Length = 296
Score = 28.5 bits (64), Expect = 4.4
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
Query: 230 VHDGKVFLQSDIEEV-----MLRMKQQFLEYGKGK 259
+ +V+++SDI+E MLR +Q + EY KGK
Sbjct: 206 LGVRRVYVKSDIDEDLIDWAMLRSRQIYKEYLKGK 240
>gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors
[Translation, ribosomal structure and biogenesis].
Length = 280
Score = 28.5 bits (64), Expect = 4.5
Identities = 9/66 (13%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 115 IDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGI 170
++ + A ++D+G+G+G + +A++ D + +++ + R++ + +G+
Sbjct: 100 VEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL 159
Query: 171 TNGYFI 176
+
Sbjct: 160 VRVLVV 165
>gnl|CDD|225370 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal
structure and biogenesis].
Length = 300
Score = 28.4 bits (64), Expect = 4.8
Identities = 34/154 (22%), Positives = 62/154 (40%), Gaps = 40/154 (25%)
Query: 101 LPGV-SA--LDRA-------FPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRK-- 148
LPGV S LD+ P D+ V+D+G G G+ L +A+K
Sbjct: 134 LPGVFSRDKLDKGSRLLLETLPPDLGGK----------VLDLGCGYGVLGLVLAKKSPQA 183
Query: 149 -----DLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 203
D+N +E R +L +G+ N A+N + + + LI+
Sbjct: 184 KLTLVDVNARAVES---ARKNLAANGVENTEVWASN---LYEPVEGKF--DLIIS----- 230
Query: 204 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237
NP F+ + + + ++ A + L G++++
Sbjct: 231 NPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWI 264
>gnl|CDD|233046 TIGR00603, rad25, DNA repair helicase rad25. All proteins in this
family for which functions are known are DNA-DNA
helicases used for the initiation of nucleotide excision
repair and transacription as part of the TFIIH
complex.This family is based on the phylogenomic
analysis of JA Eisen (1999, Ph.D. Thesis, Stanford
University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 732
Score = 28.2 bits (63), Expect = 7.6
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 27/82 (32%)
Query: 197 LVSIQCPNPDFNRPE--HRWRMVQRSLVEAVSDLLVHDGKVFLQ-SDIEEVMLRMKQ--- 250
LV+I P RPE H +++ SL AVS V L+ DI EV+ R+ +
Sbjct: 41 LVAIAEP---VCRPEHIHEYKLTAYSLYAAVS--------VGLETEDIIEVLGRLSKTPI 89
Query: 251 -----QFLE-----YGKGKLVL 262
+F+ YGK KLVL
Sbjct: 90 PKGIIEFIRLCTQSYGKVKLVL 111
>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 92
Score = 26.5 bits (59), Expect = 7.8
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 130 VDIGSGNGLFLLGMARKRKDLNFLGLEL 157
+D+G G GL +AR R G++L
Sbjct: 1 LDVGCGTGLLAEALAR-RGGARVTGVDL 27
>gnl|CDD|219556 pfam07757, AdoMet_MTase, Predicted AdoMet-dependent
methyltransferase. Proteins in this family have been
predicted to function as AdoMet-dependent
methyltransferases.
Length = 112
Score = 26.8 bits (59), Expect = 8.5
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 11/43 (25%)
Query: 117 WSAAYHDPAQPLVVDIGSGNGL--FLLGM---------ARKRK 148
W + VDIG GNGL ++L RKRK
Sbjct: 50 WRQTRSAESLQSFVDIGCGNGLLVYILASEGYRGYGIDLRKRK 92
>gnl|CDD|217247 pfam02836, Glyco_hydro_2_C, Glycosyl hydrolases family 2, TIM
barrel domain. This family contains beta-galactosidase,
beta-mannosidase and beta-glucuronidase activities.
Length = 297
Score = 27.7 bits (62), Expect = 8.9
Identities = 27/117 (23%), Positives = 41/117 (35%), Gaps = 25/117 (21%)
Query: 207 FNRPEH---RWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV-------MLRMKQQFLEYG 256
NR E R R D +V D ++ Q +I V Q EYG
Sbjct: 20 VNRHEDHPRRGRAFDE-------DDMVKDIQLMKQLNINAVRTSHYPNAPEWYQLCDEYG 72
Query: 257 KGKLVLVQDECDTKTNQGGWLG---ENSFGVRSDWEQHVIDRGAPMYRLMLSKPSCV 310
+ V DE + +T+ G W N +W + + R M + + PS +
Sbjct: 73 ----LYVIDETNLETH-GLWQKFGEINVLADNPEWLKAHLQRAREMVQRDKNHPSII 124
>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 154
Score = 27.1 bits (60), Expect = 9.6
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 129 VVDIGSGNGLFLLGMARKRKDLN 151
V+DIG G G+ L + + D+
Sbjct: 26 VLDIGCGTGILLRLLRERGFDVT 48
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.137 0.422
Gapped
Lambda K H
0.267 0.0668 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,530,842
Number of extensions: 1456166
Number of successful extensions: 1173
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1166
Number of HSP's successfully gapped: 33
Length of query: 311
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 214
Effective length of database: 6,635,264
Effective search space: 1419946496
Effective search space used: 1419946496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.6 bits)