RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 021567
(311 letters)
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1,
S-adenosyl-L-methionine, tRNA Pro structural genomics,
structural genomics consortium, SGC; HET: SAM; 1.55A
{Homo sapiens}
Length = 235
Score = 98.6 bits (246), Expect = 1e-24
Identities = 43/211 (20%), Positives = 77/211 (36%), Gaps = 19/211 (9%)
Query: 103 GVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR 162
D AQ DIG G G L+ ++ D LGLE+
Sbjct: 24 FAPLTQNQSHDDPKDKKEKRAQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVS 83
Query: 163 DSLQL----------SGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEH 212
D +Q G N + +NA + G+L + P+P F R +H
Sbjct: 84 DYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFY--KGQLTKMFFLFPDPHFKRTKH 141
Query: 213 RWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTN 272
+WR++ +L+ + +L G V+ +D+ E+ M F E+ + V ++D +
Sbjct: 142 KWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHPLFERVPLEDLSE---- 197
Query: 273 QGGWLGENSFGVRSDWEQHVIDRGAPMYRLM 303
G ++ + V+ G + +
Sbjct: 198 ---DPVVGHLGTSTEEGKKVLRNGGKNFPAI 225
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine,
phosphorylation, M7G, spout MT, tRNA processing; HET:
SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Length = 246
Score = 92.9 bits (231), Expect = 2e-22
Identities = 32/166 (19%), Positives = 67/166 (40%), Gaps = 23/166 (13%)
Query: 112 PFDIDWSAAYHDPA---------QPLVVDIGSGNGLFLLGMARKRKDLNFLGLE------ 156
P D+DWS Y + + DIG G G ++ ++ + LG+E
Sbjct: 27 PQDMDWSKLYPYYKNAENGQMTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVT 86
Query: 157 ------LVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRP 210
++ ++ G N + NA + G+L + P+P F +
Sbjct: 87 NYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFE--KGQLSKMFFCFPDPHFKQR 144
Query: 211 EHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG 256
+H+ R++ +L+ + +L G V+ +D++++ M + E+
Sbjct: 145 KHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEEHP 190
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold
methyltransferase, tRNA modification,
S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A
{Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Length = 218
Score = 77.7 bits (192), Expect = 4e-17
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 13/149 (8%)
Query: 106 ALDRAFP-FDIDWSAAYHDPAQ------PLVVDIGSGNGLFLLGMARKRKDLNFLGLEL- 157
AL+ +P +++S D P+ ++IG G G L+ MA+ R + +FLG+E+
Sbjct: 8 ALENYWPVMGVEFSEDMLDFPALFGREAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVH 67
Query: 158 ---VTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRW 214
V C S G++N + +A ++ L +V + P+P ++
Sbjct: 68 SPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIP--DNSLRMVQLFFPDPWHKARHNKR 125
Query: 215 RMVQRSLVEAVSDLLVHDGKVFLQSDIEE 243
R+VQ E V L G + +D E
Sbjct: 126 RIVQVPFAELVKSKLQLGGVFHMATDWEP 154
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis}
SCOP: c.66.1.53
Length = 213
Score = 73.0 bits (180), Expect = 1e-15
Identities = 25/141 (17%), Positives = 63/141 (44%), Gaps = 8/141 (5%)
Query: 107 LDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCR 162
+ + W+ + + P+ +++G+G G F+ GMA++ D+N++G+EL +
Sbjct: 21 ISNPADYKGKWNTVFGNDN-PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAV 79
Query: 163 DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLV 222
++ S N + +A T + PG++ V + +P + + R+ +
Sbjct: 80 QKVKDSEAQNVKLLNIDAD-TLTDVFE--PGEVKRVYLNFSDPWPKKRHEKRRLTYSHFL 136
Query: 223 EAVSDLLVHDGKVFLQSDIEE 243
+ +++ G + ++D
Sbjct: 137 KKYEEVMGKGGSIHFKTDNRG 157
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich,
S-adenosylmeth dependent, structural genomics, PSI;
2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Length = 214
Score = 71.1 bits (175), Expect = 8e-15
Identities = 23/141 (16%), Positives = 64/141 (45%), Gaps = 8/141 (5%)
Query: 107 LDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCR 162
+ W + + P+ V++GSG G F+ GMA++ D+N++G+++ +++
Sbjct: 24 VLNPLEAKAKWRDLFGNDN-PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYAL 82
Query: 163 DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLV 222
D + G+ N + + + G++ + + +P + + R+ ++ +
Sbjct: 83 DKVLEVGVPNIKLLWVDGSDLTDYFE---DGEIDRLYLNFSDPWPKKRHEKRRLTYKTFL 139
Query: 223 EAVSDLLVHDGKVFLQSDIEE 243
+ +L +G++ ++D
Sbjct: 140 DTFKRILPENGEIHFKTDNRG 160
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic
resistance, aminoglycoside, S-adenosyl-L-methionine;
HET: SAH; 1.69A {Streptomyces SP}
Length = 218
Score = 70.5 bits (172), Expect = 1e-14
Identities = 17/171 (9%), Positives = 49/171 (28%), Gaps = 19/171 (11%)
Query: 114 DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL--------VTHCRDSL 165
D ++ +V+D+G+G+G +AR+ + L+
Sbjct: 17 DAEFEQLR-SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKP 75
Query: 166 QLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAV 225
G+ N ++ A P + + P + ++ +
Sbjct: 76 AKGGLPNLLYLWATA--------ERLPPLSGVGELHVLMP-WGSLLRGVLGSSPEMLRGM 126
Query: 226 SDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGW 276
+ + + ++ + + E+ + + + + GW
Sbjct: 127 AAVCRPGASFLVALNLHAWRPSV-PEVGEHPEPTPDSADEWLAPRYAEAGW 176
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH;
1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A*
3mte_A*
Length = 225
Score = 53.6 bits (128), Expect = 1e-08
Identities = 19/133 (14%), Positives = 44/133 (33%), Gaps = 16/133 (12%)
Query: 116 DWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT--------HCRDSLQL 167
+ + + +D+G+G+G + +A ++ ++G++ V
Sbjct: 16 ELTEIIGQF-DRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSK 74
Query: 168 SGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSD 227
G++N F+ A S+ +SI P R ++ V+D
Sbjct: 75 GGLSNVVFVIAAA----ESLPFELKNIADSISILFPWGTL---LEYVIKPNRDILSNVAD 127
Query: 228 LLVHDGKVFLQSD 240
L + +
Sbjct: 128 LAKKEAHFEFVTT 140
>3lpm_A Putative methyltransferase; structural genomics, protein structure
initiative, NEW YORK structural genomix research
consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Length = 259
Score = 44.0 bits (104), Expect = 2e-05
Identities = 22/143 (15%), Positives = 48/143 (33%), Gaps = 18/143 (12%)
Query: 129 VVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGITN---------GYF 175
++D+ SGNG+ L ++ R +G+E+ + S+ + + +
Sbjct: 53 IIDLCSGNGIIPLLLST-RTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKI 111
Query: 176 IATNATSTFRSIVASYP-GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGK 234
+ + P S++ N F H + + LL GK
Sbjct: 112 TDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGK 171
Query: 235 VFL---QSDIEEVMLRMKQQFLE 254
+ +++ M++ LE
Sbjct: 172 ANFVHRPERLLDIIDIMRKYRLE 194
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted
transferase, predicted O-methyltransferase, PFAM
PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Length = 260
Score = 39.9 bits (93), Expect = 6e-04
Identities = 18/147 (12%), Positives = 39/147 (26%), Gaps = 23/147 (15%)
Query: 129 VVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGITN------------ 172
+ D+G+G G + +A + + E R SL+L
Sbjct: 40 IADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADV 99
Query: 173 GYFIATNATSTFRS----IVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDL 228
+ V P + P+ + + S +
Sbjct: 100 TLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAI 159
Query: 229 LVHDGK---VFLQSDIEEVMLRMKQQF 252
+V G+ + + E++ +F
Sbjct: 160 MVSGGQLSLISRPQSVAEIIAACGSRF 186
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 0.002
Identities = 24/145 (16%), Positives = 43/145 (29%), Gaps = 50/145 (34%)
Query: 147 RKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPD 206
R + FL + T R S +T Y + + A Y VS
Sbjct: 88 RINYKFLMSPIKTEQRQP---SMMTRMYIEQRDRLYNDNQVFAKYN-----VS------- 132
Query: 207 FNRPEHRWRMVQRSLVEA--VSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQ 264
R + + ++++L+E ++L+ G + G GK +
Sbjct: 133 --RLQPYLK-LRQALLELRPAKNVLID-G--------------VL------GSGKTWVAL 168
Query: 265 DEC---DTKTNQGG---WLGENSFG 283
D C + WL +
Sbjct: 169 DVCLSYKVQCKMDFKIFWL---NLK 190
Score = 31.7 bits (71), Expect = 0.31
Identities = 41/288 (14%), Positives = 87/288 (30%), Gaps = 77/288 (26%)
Query: 18 KRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKA---IA 74
++ LL+L+ V + G+L G T + C +
Sbjct: 141 RQALLELRPAKNVL----------------IDGVL-----G-SGKTWVALDVCLSYKVQC 178
Query: 75 KVSSSIFGLNM--VESGSAVWEFLKG---RMLPGVSAL-DRAF--PFDIDWSAAY----- 121
K+ IF LN+ S V E L+ ++ P ++ D + I A
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 122 --HDPAQPLVV--DIGSGNGL--FLLG-----MARKRKDLNFLGLELVTHCRDSLQLSGI 170
L+V ++ + F L R ++ +FL TH +
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 171 TNGY-------FIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVE 223
T ++ R ++ + P +L +++ + + W+ V +
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD-GLATWD-NWKHVN---CD 353
Query: 224 AVSDLLVHDGKVFLQS-DIEEVMLRMKQQFLEYGKGKLVLVQDECDTK 270
++ ++ + L + E ++ F L +
Sbjct: 354 KLTTII----ESSLNVLEPAE----YRKMFDR-----LSVFPP--SAH 386
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 36.7 bits (85), Expect = 0.005
Identities = 10/68 (14%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 90 SAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKD 149
S ++ + + +P D + + ++ + ++D+G+G GL + K +
Sbjct: 14 SGKYDEQRRKFIPC---FDDFYGVSVSIASVDTENPD--ILDLGAGTGLLSAFLMEKYPE 68
Query: 150 LNFLGLEL 157
F +++
Sbjct: 69 ATFTLVDM 76
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 34.6 bits (79), Expect = 0.033
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 115 IDWSAAYHDPAQPLVVDIGSGNGLFLLGMAR 145
YHD + L+VD+G G G L MA+
Sbjct: 26 YKMIDEYHDGERKLLVDVGCGPGTATLQMAQ 56
>16pk_A PGK, 3-phosphoglycerate kinase; ternary complex, glycolysis,
transferase, bisubstrate, analog; HET: BIS EPE; 1.60A
{Trypanosoma brucei} SCOP: c.86.1.1 PDB: 13pk_A*
Length = 415
Score = 34.1 bits (79), Expect = 0.047
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 17/91 (18%)
Query: 27 VIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMACKAIAKVSSSIFG 82
IW GP+ F YS G + + + + +++IG S + ++ + +
Sbjct: 331 AIWNGPMGVFEMVP-YSKGTFAIAKAMGRGTHEHGLMSIIGGGDSASAAELSGEAKRM-- 387
Query: 83 LNMVES-----GSAVWEFLKGRMLPGVSALD 108
S G A E L+G+ LPGV+ LD
Sbjct: 388 -----SHVSTGGGASLELLEGKTLPGVTVLD 413
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 33.7 bits (77), Expect = 0.048
Identities = 16/115 (13%), Positives = 35/115 (30%), Gaps = 30/115 (26%)
Query: 129 VVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGITNGYFIATNATSTF 184
V+DIG G G FL K + + +G+++ + C + ++ +
Sbjct: 45 VLDIGCGRGEFLELC--KEEGIESIGVDINEDMIKFCEGKFNVVKSDAIEYLKSLPDKYL 102
Query: 185 RSIVASY----------------------PGKLILVSIQCPNPDFNRPEHRWRMV 217
++ S+ I++ PNP + +
Sbjct: 103 DGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIES--PNPTSLYSLINFYID 155
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus} PDB:
3lby_A*
Length = 185
Score = 32.1 bits (73), Expect = 0.12
Identities = 21/113 (18%), Positives = 35/113 (30%), Gaps = 9/113 (7%)
Query: 129 VVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGITNGYFIATNATSTF 184
VVD GNG +A K + ++ + L GI N I
Sbjct: 26 VVDATMGNGNDTAFLAGLSKKV--YAFDVQEQALGKTSQRLSDLGIENTELILDG-HENL 82
Query: 185 RSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 237
V I P+ D + ++ +E + D L G++ +
Sbjct: 83 DHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEA--IEKILDRLEVGGRLAI 133
>2wzb_A Phosphoglycerate kinase 1; hereditary hemolytic anemia,
transferase, phosphoprotein, KI glycolysis,
nucleotide-binding; HET: ADP 3PG; 1.47A {Homo sapiens}
PDB: 2wzc_A* 2x13_A* 2x15_A* 2xe6_A* 2xe7_A* 2xe8_A*
2ybe_A* 3c3b_A* 2zgv_A* 3c3a_A* 3c39_A* 3c3c_A* 2wzd_A*
2x14_A* 2y3i_A* 1vjd_A* 1vjc_A* 1kf0_A* 1hdi_A* 2p9t_A*
...
Length = 416
Score = 32.9 bits (76), Expect = 0.13
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 18/91 (19%)
Query: 27 VIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMACKAIAKVSSSIFG 82
++W GPV F + + ++ G L + K + C +T+IG + C A +
Sbjct: 333 IVWNGPVGVFEWEA-FARGTKALMDEVVKATSRGC-ITIIGGGDTATCCAKWNTEDKV-- 388
Query: 83 LNMVES-----GSAVWEFLKGRMLPGVSALD 108
S G A E L+G++LPGV AL
Sbjct: 389 -----SHVSTGGGASLELLEGKVLPGVDALS 414
>2cun_A Phosphoglycerate kinase; structural genomics, tanpaku 3000,
structural genomics/proteomics initiative, RSGI, NPPSFA;
HET: 3PG; 2.10A {Pyrococcus horikoshii}
Length = 410
Score = 32.9 bits (76), Expect = 0.14
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 20/92 (21%)
Query: 27 VIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMACKAIAKVSSSIFG 82
++ GP+ F +++ G T + K + +V+G S+A +I K +G
Sbjct: 322 IVANGPMGVFERE-EFAIG----TVEVFKAIADSPAFSVLGGGHSIA--SIQK-----YG 369
Query: 83 LNMVE--S--GSAVWEFLKGRMLPGVSALDRA 110
+ + S G A+ F G LP + AL +
Sbjct: 370 ITGITHISTGGGAMLSFFAGEELPVLRALQIS 401
>3oz7_A Phosphoglycerate kinase; transferase, ATP binding, glycolysi
malaria parasite; 2.70A {Plasmodium falciparum} PDB:
1ltk_A* 3oza_A
Length = 417
Score = 32.5 bits (75), Expect = 0.15
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 18/91 (19%)
Query: 27 VIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMACKAIAKVSSSIFG 82
VIW GP F ++ G+ + ++ +V++ +T++G + + + I
Sbjct: 335 VIWNGPQGVFEMP-NFAKGSIECLNLVVEVTKKGA-ITIVGGGDTASLVEQQNKKNEI-- 390
Query: 83 LNMVES-----GSAVWEFLKGRMLPGVSALD 108
S G A E L+G+ LPGV AL
Sbjct: 391 -----SHVSTGGGASLELLEGKELPGVLALS 416
>4fey_A Phosphoglycerate kinase; structural genomics, niaid, national
institute of allergy AN infectious diseases; HET: ADP;
2.30A {Francisella tularensis subsp} PDB: 4ehj_A
Length = 395
Score = 32.4 bits (75), Expect = 0.16
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 22/94 (23%)
Query: 27 VIWVGPV-KFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMACKAIAKVSSSIFG 82
++W GPV F F ++ G T L + +V G ++A AI K FG
Sbjct: 312 ILWNGPVGVFEFD-NFAEG----TKALSLAIAQSHAFSVAGGGDTIA--AIEK-----FG 359
Query: 83 LNMVES-----GSAVWEFLKGRMLPGVSAL-DRA 110
+ S G A EFL+G+ LP + L ++A
Sbjct: 360 IKDQVSYISTAGGAFLEFLEGKKLPAIEILKEKA 393
>1qpg_A PGK, 3-phosphoglycerate kinase; phosphotransferase (carboxyl
acceptor), acetylation, glycolysis; HET: MAP 3PG; 2.40A
{Saccharomyces cerevisiae} SCOP: c.86.1.1 PDB: 3pgk_A*
Length = 415
Score = 32.5 bits (75), Expect = 0.18
Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 18/91 (19%)
Query: 27 VIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMACKAIAKVSSSIFG 82
++W GP F F +++ G L + K S +IG + V+ I
Sbjct: 331 IVWNGPPGVFEFE-KFAAGTKALLDEVVKSSAAGN-TVIIGGGDTATVAKKYGVTDKI-- 386
Query: 83 LNMVES-----GSAVWEFLKGRMLPGVSALD 108
S G A E L+G+ LPGV+ L
Sbjct: 387 -----SHVSTGGGASLELLEGKELPGVAFLS 412
>1zmr_A Phosphoglycerate kinase; transferase, glycolysis; 2.40A
{Escherichia coli}
Length = 387
Score = 31.7 bits (73), Expect = 0.26
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 22/94 (23%)
Query: 27 VIWVGPV-KFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMACKAIAKVSSSIFG 82
++W GPV F F + G T ++ + ++ G ++A AI FG
Sbjct: 304 ILWNGPVGVFEFP-NFRKG----TEIVANAIADSEAFSIAGGGDTLA--AIDL-----FG 351
Query: 83 LNMVES-----GSAVWEFLKGRMLPGVSAL-DRA 110
+ S G A EF++G++LP V+ L +RA
Sbjct: 352 IADKISYISTGGGAFLEFVEGKVLPAVAMLEERA 385
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics
consortium (SGC), methyltransferase, phosphoprotein,
S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Length = 292
Score = 31.1 bits (69), Expect = 0.37
Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 4/56 (7%)
Query: 129 VVDIGSGNGLFLLGMARKRKDLNFLGL----ELVTHCRDSLQLSGITNGYFIATNA 180
V+D+G G L +A K +GL L+ R +++
Sbjct: 50 VLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTL 105
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S
rRNA, NESG, structural genomics, PSI, protein structure
initiative; HET: SAM; 2.80A {Escherichia coli} SCOP:
c.66.1.33
Length = 269
Score = 31.0 bits (70), Expect = 0.39
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 119 AAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL 157
D V+DIG G G + A ++ GL++
Sbjct: 79 RERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDV 117
>1vpe_A Phosphoglycerate kinase; transferase, hyperthermostability,
crystal, AMP-PNP, 3-PGA; HET: ANP 3PG; 2.00A {Thermotoga
maritima} SCOP: c.86.1.1
Length = 398
Score = 31.3 bits (72), Expect = 0.41
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 18/91 (19%)
Query: 27 VIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMACKAIAKVSSSIFG 82
V+W GP+ F ++ G ++ + +++ +TV+G S A +
Sbjct: 313 VVWNGPMGVFEID-DFAEGTKQVALAIAALTEKGA-ITVVGGGDSAAAVNKFGLEDKF-- 368
Query: 83 LNMVES-----GSAVWEFLKGRMLPGVSALD 108
S G A EFL+G+ LPG++++
Sbjct: 369 -----SHVSTGGGASLEFLEGKELPGIASMR 394
>1php_A 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobacillus
stearothermophilus} SCOP: c.86.1.1 PDB: 3b2b_A* 3uwd_A*
Length = 394
Score = 30.9 bits (71), Expect = 0.45
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 22/92 (23%)
Query: 27 VIWVGPVK-FRFSSQYSNGASKLTGMLCK-VSQGTCNVTVIG---SMACKAIAKVSSSIF 81
V+W GP+ F +++G T + + +++ +VIG S A ++ +
Sbjct: 313 VVWNGPMGVFEMD-AFAHG----TKAIAEALAEALDTYSVIGGGDSAAAVEKFGLADKM- 366
Query: 82 GLNMVES-----GSAVWEFLKGRMLPGVSALD 108
G A EF++G+ LPGV AL+
Sbjct: 367 ------DHISTGGGASLEFMEGKQLPGVVALE 392
>3q3v_A Phosphoglycerate kinase; structural genomics, center for structural
genomics of infec diseases, csgid, PGK; HET: PGE; 2.15A
{Campylobacter jejuni subsp}
Length = 403
Score = 30.9 bits (71), Expect = 0.54
Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 21/91 (23%)
Query: 27 VIWVGPV-KFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMACKAIAKVSSSIFG 82
+ W GP+ F ++S G + + +V+G + A A + +
Sbjct: 320 IWWNGPMGVFEID-KFSKG----SIKMSHYISEGHATSVVGGGDTADVVARAGDADEM-- 372
Query: 83 LNMVES-----GSAVWEFLKGRMLPGVSALD 108
+ G A E ++G+ LPGV AL
Sbjct: 373 -----TFISTGGGASLELIEGKELPGVKALR 398
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint
center for structural genomics, JCSG; HET: SAH; 2.11A
{Anabaena variabilis atcc 29413}
Length = 245
Score = 30.4 bits (68), Expect = 0.70
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 108 DRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMAR 145
+RA D+ +P P ++D GNG +++
Sbjct: 40 ERAVVVDLPRFELLFNPELP-LIDFACGNGTQTKFLSQ 76
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 30.2 bits (68), Expect = 0.72
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 108 DRAFPFDIDWSAAYHDPAQP----LVVDIGSGNGLFLLGMARK 146
+ DI A + ++ DIG+G G + + +A +
Sbjct: 13 SQTRVPDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQ 55
>3fvy_A Dipeptidyl-peptidase 3; SGC, DPP3, alternative splicing,
aminopeptidase, cytoplasm, hydrolase, metal-binding,
metalloprotease, phosphoprotein; 1.90A {Homo sapiens}
PDB: 3t6b_A 3t6j_A
Length = 728
Score = 30.6 bits (68), Expect = 0.78
Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 1/91 (1%)
Query: 156 ELVTHCRDSLQLSGITNGYFIATNATSTFRSI-VASYPGKLILVSIQCPNPDFNRPEHRW 214
LV L+ + T F S+ V ++ G I I PN D R +
Sbjct: 347 RLVASAEQLLKELPWPPTFEKDKFLTPDFTSLDVLTFAGSGIPAGINIPNYDDLRQTEGF 406
Query: 215 RMVQRSLVEAVSDLLVHDGKVFLQSDIEEVM 245
+ V V AV+ + FL+ D +++
Sbjct: 407 KNVSLGNVLAVAYATQREKLTFLEEDDKDLY 437
>1v6s_A Phosphoglycerate kinase; riken structu genomics/proteomics
initiative, RSGI, structural genomics, transferase;
1.50A {Thermus thermophilus} SCOP: c.86.1.1 PDB: 2ie8_A
Length = 390
Score = 30.1 bits (69), Expect = 0.85
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 89 GSAVWEFLKGRMLPGVSALD 108
G A EFL+ LPG+ L+
Sbjct: 370 GGASLEFLEKGTLPGLEVLE 389
>2p7i_A Hypothetical protein; putative methyltransferase, structural
genomics, joint cente structural genomics, JCSG; 1.74A
{Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41
PDB: 2p7h_A
Length = 250
Score = 29.8 bits (67), Expect = 0.87
Identities = 6/29 (20%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 129 VVDIGSGNGLFLLGMARKRKDLNFLGLEL 157
++++GS G F + D+ +E
Sbjct: 46 LLELGSFKGDFTSRLQEHFNDI--TCVEA 72
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 29.8 bits (66), Expect = 1.3
Identities = 26/134 (19%), Positives = 47/134 (35%), Gaps = 25/134 (18%)
Query: 129 VVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIV 188
VD+GSG G +L +A + G+E A FR +
Sbjct: 177 FVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAK------------YAETMDREFRKWM 224
Query: 189 ASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRM 248
Y K +++ DF E R R+ + ++ + F EV ++
Sbjct: 225 KWYGKKHAEYTLER--GDFLSEEWRERIAN-------TSVIFVNNFAFG----PEVDHQL 271
Query: 249 KQQFLEYGKGKLVL 262
K++F +G ++
Sbjct: 272 KERFANMKEGGRIV 285
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural
genomics, BSGC structure funded by NIH; 1.80A
{Methanocaldococcus jannaschii} SCOP: c.66.1.4
Length = 194
Score = 29.2 bits (66), Expect = 1.3
Identities = 23/140 (16%), Positives = 57/140 (40%), Gaps = 37/140 (26%)
Query: 129 VVDIGSGNGLFLLGMARKRK-----DLNFLGLELVTHCRDSLQLSGITNGY--FIATNAT 181
++D+G G G+ + +A + K D+N ++L +++++L+ + N + ++
Sbjct: 56 ILDLGCGYGVIGIALADEVKSTTMADINRRAIKL---AKENIKLNNLDNYDIRVVHSDLY 112
Query: 182 S-----TFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF 236
+ I+ NP P + V ++E +LL +G+++
Sbjct: 113 ENVKDRKYNKIIT--------------NP----PIRAGKEVLHRIIEEGKELLKDNGEIW 154
Query: 237 L----QSDIEEVMLRMKQQF 252
+ + + + MK F
Sbjct: 155 VVIQTKQGAKSLAKYMKDVF 174
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 1.5
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 16/37 (43%)
Query: 71 KAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSAL 107
+A+ K+ +S L + SA P AL
Sbjct: 20 QALKKLQAS---LKLYADDSA----------P---AL 40
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 28.6 bits (64), Expect = 2.1
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 129 VVDIGSGNGLFLLGMARK 146
V+DIG +G +
Sbjct: 36 VLDIGCSSGALGAAIKEN 53
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 28.7 bits (64), Expect = 2.3
Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 129 VVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGITNGYFIATNATS 182
V++ G G G + +A+ D +++ + R++ + +GI N F+ N S
Sbjct: 41 VLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFS 98
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB:
3jwj_A
Length = 217
Score = 28.3 bits (63), Expect = 2.6
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 129 VVDIGSGNGLFLLGMARKRKDLNFLGLEL 157
V+D+G G G L + + G+++
Sbjct: 33 VIDLGCGQGNLLKILLKDSFFEQITGVDV 61
>3rrs_A Cellobiose phosphorylase; GH94, alpha barrel, disaccharide
phosphorylase, transferase; 1.70A {Cellulomonas uda}
PDB: 2cqs_A* 2cqt_A* 3qfy_A* 3qfz_A* 3qg0_A* 3act_A*
3acs_A* 3afj_A*
Length = 822
Score = 28.6 bits (63), Expect = 2.9
Identities = 8/83 (9%), Positives = 28/83 (33%), Gaps = 2/83 (2%)
Query: 139 FLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILV 198
++LG + + + + + + + + + + F ++ + L
Sbjct: 265 YVLGYVENPDEEKWA--DDAKQVVNKERAHALLSRFATSEQTDAAFAALKDYWTDLLSTY 322
Query: 199 SIQCPNPDFNRPEHRWRMVQRSL 221
S+ + +R + W Q +
Sbjct: 323 SVSSNDEKLDRMVNIWNQYQCMV 345
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 28.2 bits (63), Expect = 2.9
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 129 VVDIGSGNGLFLLGMARK 146
++IG G F +A
Sbjct: 55 GLEIGCAAGAFTEKLAPH 72
>3qde_A Cellobiose phosphorylase; cellulase, phosphate, transferase; 2.40A
{Clostridium thermocellum}
Length = 811
Score = 28.6 bits (63), Expect = 3.1
Identities = 8/80 (10%), Positives = 25/80 (31%), Gaps = 4/80 (5%)
Query: 139 FLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILV 198
F++G + + + ++ + + + F + + + L
Sbjct: 260 FIIGYVENKDEEKWESKGVINK----KKAYEMIEQFNTVEKVDKAFEELKSYWNALLSKY 315
Query: 199 SIQCPNPDFNRPEHRWRMVQ 218
++ + NR + W Q
Sbjct: 316 FLESHDEKLNRMVNIWNQYQ 335
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification,
transferase; HET: SAM; 2.00A {Methanocaldococcus
jannaschii}
Length = 272
Score = 28.1 bits (62), Expect = 3.5
Identities = 12/58 (20%), Positives = 21/58 (36%)
Query: 117 WSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGY 174
A+ +VVD+ +G G F + +A+ K +E L + N
Sbjct: 111 KRMAFISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKL 168
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU
genomics, PSI-2, protein structure initiative; HET: SAH;
2.40A {Micromonospora echinospora}
Length = 348
Score = 28.0 bits (63), Expect = 3.7
Identities = 16/95 (16%), Positives = 26/95 (27%), Gaps = 29/95 (30%)
Query: 91 AVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDP-----------------AQPL----- 128
+ + + P A F + + D L
Sbjct: 123 TMSHRVASALGPERPAFADIFGSSL-DAYFDGDAEVEALYYEGMETVSAAEHLILARAGD 181
Query: 129 ------VVDIGSGNGLFLLGMARKRKDLNFLGLEL 157
V D+G G G FLL + R+ L + L+
Sbjct: 182 FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR 216
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 27.7 bits (62), Expect = 3.8
Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 11/62 (17%)
Query: 129 VVDIGSGNGLFLLGMARKRK--------DLNFLGLELVTHCRDSLQLSGITNGYFIATNA 180
V+D+G+G G +L +++ D+ E+V + + + G+ N + +
Sbjct: 41 VLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQ---EEMVNYAWEKVNKLGLKNVEVLKSEE 97
Query: 181 TS 182
Sbjct: 98 NK 99
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum}
PDB: 3jwi_A
Length = 219
Score = 27.6 bits (61), Expect = 3.9
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 129 VVDIGSGNGLFLLGMARKRKDLNFLGLEL 157
V+D+G G G L + + + G+++
Sbjct: 33 VIDLGCGEGNLLSLLLKDKSFEQITGVDV 61
>1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycoly
mutant, permutation, permuted sequence, protein foldin
domain protein; 2.30A {Saccharomyces cerevisiae} SCOP:
c.86.1.1
Length = 416
Score = 27.9 bits (63), Expect = 5.1
Identities = 24/97 (24%), Positives = 35/97 (36%), Gaps = 18/97 (18%)
Query: 27 VIWVGPV-KFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMACKAIAKVSSSIFG 82
++W GP F F ++ G L + K S +IG + V+ I
Sbjct: 261 IVWNGPPGVFEFEK-FAAGTKALLDEVVKSSAAGN-TVIIGGGDTATVAKKYGVTDKI-- 316
Query: 83 LNMVES-----GSAVWEFLKGRMLPGVSALDRAFPFD 114
S G A E L+G+ LPGV+ L
Sbjct: 317 -----SHVSTGGGASLELLEGKELPGVAFLSEKKSLS 348
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate,
tailoring enzyme, polyketide, S-adenosyl-L-homocystein;
HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP:
a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Length = 360
Score = 27.7 bits (62), Expect = 5.4
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 129 VVDIGSGNGLFLLGMARKRKDLNFLGLEL 157
V+D+G G G F +AR+ ++ LE+
Sbjct: 187 VLDVGGGKGGFAAAIARRAPHVSATVLEM 215
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent
methyltransfer structural genomics, PSI-2; HET: MSE;
1.90A {Burkholderia thailandensis}
Length = 352
Score = 27.3 bits (61), Expect = 6.0
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
Query: 116 DWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL 157
++ A V+D+ G+G +L + R+ L +L
Sbjct: 176 VFARART------VIDLAGGHGTYLAQVLRRHPQLTGQIWDL 211
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 27.2 bits (60), Expect = 6.3
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 129 VVDIGSGNGLFLLGMARK 146
VVD GNG +A
Sbjct: 26 VVDATCGNGNDTAFLASL 43
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
iron-sulfur clusters, pyrimidine catabolism,
5-fluorouracil degradation, oxidoreductase; HET: FMN
FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1
c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Length = 1025
Score = 27.5 bits (61), Expect = 8.0
Identities = 21/139 (15%), Positives = 43/139 (30%), Gaps = 23/139 (16%)
Query: 95 FLKGRMLPGVSALDRAFPFDIDWSAAY---HDPAQPLVVDIGSGNGLFLLGMARKRKDLN 151
F P S+ F+ W A + +V ++ +
Sbjct: 546 FGLASAAPTTSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVRGTTSGPMYGPGQS 605
Query: 152 -FLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRP 210
FL +EL++ + +T + A +P +++ SI C
Sbjct: 606 SFLNIELISEKTAAYWCQSVT--------------ELKADFPDNIVIASIMCSY-----N 646
Query: 211 EHRWRMVQRSLVEAVSDLL 229
++ W + R + +D L
Sbjct: 647 KNDWMELSRKAEASGADAL 665
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH;
2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A*
3i5u_A* 3i64_A*
Length = 332
Score = 26.8 bits (60), Expect = 9.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 129 VVDIGSGNGLFLLGMARKRKDLNFLGLEL 157
VVD+G G+G L + +DL+ L+L
Sbjct: 173 VVDVGGGSGGLLSALLTAHEDLSGTVLDL 201
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.422
Gapped
Lambda K H
0.267 0.0852 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,724,997
Number of extensions: 274331
Number of successful extensions: 629
Number of sequences better than 10.0: 1
Number of HSP's gapped: 623
Number of HSP's successfully gapped: 61
Length of query: 311
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 218
Effective length of database: 4,105,140
Effective search space: 894920520
Effective search space used: 894920520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.5 bits)