RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 021567
(311 letters)
>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase
TrmB {Bacillus subtilis [TaxId: 1423]}
Length = 204
Score = 73.8 bits (180), Expect = 3e-16
Identities = 34/205 (16%), Positives = 83/205 (40%), Gaps = 17/205 (8%)
Query: 106 ALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLE----LVTHC 161
A+ + W+ + + P+ +++G+G G F+ GMA++ D+N++G+E ++
Sbjct: 11 AISNPADYKGKWNTVFGND-NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTA 69
Query: 162 RDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSL 221
++ S N + +A + PG++ V + +P + + R+
Sbjct: 70 VQKVKDSEAQNVKLLNIDADTLTDVF---EPGEVKRVYLNFSDPWPKKRHEKRRLTYSHF 126
Query: 222 VEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENS 281
++ +++ G + ++D + + F EYG T +
Sbjct: 127 LKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGL---------LLTYVSLDLHNSNLE 177
Query: 282 FGVRSDWEQHVIDRGAPMYRLMLSK 306
+ +++E+ G P+YR +
Sbjct: 178 GNIMTEYEEKFSALGQPIYRAEVEW 202
>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase
TrmB {Streptococcus pneumoniae [TaxId: 1313]}
Length = 204
Score = 66.4 bits (161), Expect = 1e-13
Identities = 31/197 (15%), Positives = 78/197 (39%), Gaps = 11/197 (5%)
Query: 107 LDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ 166
+ W + + P+ V++GSG G F+ GMA++ D+N++G+++
Sbjct: 14 VLNPLEAKAKWRDLFGNDN-PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYAL 72
Query: 167 LSGITNGYFIATNATSTFRSIVASYP-GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAV 225
+ G + + G++ + + +P + + R+ ++ ++
Sbjct: 73 DKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTF 132
Query: 226 SDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVR 285
+L +G++ ++D + F +YG + D + V
Sbjct: 133 KRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNGVWLDL---------HASDFEGNVM 183
Query: 286 SDWEQHVIDRGAPMYRL 302
+++EQ ++G +YR+
Sbjct: 184 TEYEQKFSNKGQVIYRV 200
>d16pka_ c.86.1.1 (A:) Phosphoglycerate kinase {Trypanosoma brucei
[TaxId: 5691]}
Length = 415
Score = 61.4 bits (148), Expect = 3e-11
Identities = 23/101 (22%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Query: 9 LSILGQGPWKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSM 68
+ + + + + ++ IW GP+ YS G + + + + +++IG
Sbjct: 313 IGPKTIEKYVQTIGKCKSAIWNGPMGVFEMVPYSKGTFAIAKAMGRGTHEHGLMSIIGGG 372
Query: 69 ACKAIAKVSSSIFGLNMVES-GSAVWEFLKGRMLPGVSALD 108
+ A++S ++ V + G A E L+G+ LPGV+ LD
Sbjct: 373 DSASAAELSGEAKRMSHVSTGGGASLELLEGKTLPGVTVLD 413
>d1vpea_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermotoga maritima
[TaxId: 2336]}
Length = 398
Score = 58.6 bits (141), Expect = 2e-10
Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 7/103 (6%)
Query: 11 ILGQGP-----WKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVI 65
L GP +K+ L + V+W GP+ ++ G ++ + +++ +TV+
Sbjct: 292 GLDIGPETIELFKQKLSDAKTVVWNGPMGVFEIDDFAEGTKQVALAIAALTEKGA-ITVV 350
Query: 66 GSMACKAIAKVSSSIFGLNMVES-GSAVWEFLKGRMLPGVSAL 107
G A + V + G A EFL+G+ LPG++++
Sbjct: 351 GGGDSAAAVNKFGLEDKFSHVSTGGGASLEFLEGKELPGIASM 393
>d1ltka_ c.86.1.1 (A:) Phosphoglycerate kinase {Malaria parasite
(Plasmodium falciparum) [TaxId: 5833]}
Length = 417
Score = 58.2 bits (140), Expect = 4e-10
Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 15/108 (13%)
Query: 11 ILGQGP-----WKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVI 65
L GP +K ++L + VIW GP ++ G+ + ++ +V++ V
Sbjct: 314 GLDAGPKSIENYKDVILTSKTVIWNGPQGVFEMPNFAKGSIECLNLVVEVTKKGAITIVG 373
Query: 66 GSMACKAIAKVSSSIFGLN-----MVESGSAVWEFLKGRMLPGVSALD 108
G + + + G A E L+G+ LPGV AL
Sbjct: 374 GGDTASLVEQ-----QNKKNEISHVSTGGGASLELLEGKELPGVLALS 416
>d1v6sa_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermus thermophilus
[TaxId: 274]}
Length = 390
Score = 56.3 bits (135), Expect = 1e-09
Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 4/109 (3%)
Query: 1 MVFQMVGNLSILGQGPWKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTC 60
V M ++ + + R L + V W GP+ + G + ++
Sbjct: 284 PVPYMGLDIGPKTREAFARALEGARTVFWNGPMGVFEVPPFDEGTLA---VGQAIAALEG 340
Query: 61 NVTVIGSMACKAIAKVSSSIFGLNMVES-GSAVWEFLKGRMLPGVSALD 108
TV+G A V + G A EFL+ LPG+ L+
Sbjct: 341 AFTVVGGGDSVAAVNRLGLKERFGHVSTGGGASLEFLEKGTLPGLEVLE 389
>d1phpa_ c.86.1.1 (A:) Phosphoglycerate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 394
Score = 53.5 bits (128), Expect = 1e-08
Identities = 20/93 (21%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 17 WKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKV 76
++ ++ + + V+W GP+ +++G + +++ +VIG A +
Sbjct: 303 YRDVIRESKLVVWNGPMGVFEMDAFAHGTKA---IAEALAEALDTYSVIGGGDSAAAVEK 359
Query: 77 SSSIFGLNMVES-GSAVWEFLKGRMLPGVSALD 108
++ + + G A EF++G+ LPGV AL+
Sbjct: 360 FGLADKMDHISTGGGASLEFMEGKQLPGVVALE 392
>d1hdia_ c.86.1.1 (A:) Phosphoglycerate kinase {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 413
Score = 52.8 bits (126), Expect = 2e-08
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 6/107 (5%)
Query: 5 MVGNLSILGQGPWKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTV 64
M + + + + + ++W GPV ++ G L + K + C +T+
Sbjct: 308 MGLDCGPKSSAKYSEAVARAKQIVWNGPVGVFEWEAFAQGTKALMDEVVKATSRGC-ITI 366
Query: 65 IG---SMACKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALD 108
IG + C A ++ ++ G A E L+G++LPGV AL
Sbjct: 367 IGGGDTATCCAKWNTEDNVSHVST--GGGASLELLEGKVLPGVDALS 411
>d1qpga_ c.86.1.1 (A:) Phosphoglycerate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 415
Score = 52.4 bits (125), Expect = 3e-08
Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 7/107 (6%)
Query: 8 NLSILGQGP-----WKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNV 62
L GP + + + + ++W GP +++ G L + K S N
Sbjct: 307 GWQGLDNGPESRKLFAATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVK-SSAAGNT 365
Query: 63 TVIGSMACKAIAKVSSSIFGLNMV-ESGSAVWEFLKGRMLPGVSALD 108
+IG +AK ++ V G A E L+G+ LPGV+ L
Sbjct: 366 VIIGGGDTATVAKKYGVTDKISHVSTGGGASLELLEGKELPGVAFLS 412
>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia
coli [TaxId: 562]}
Length = 268
Score = 31.1 bits (69), Expect = 0.14
Identities = 10/47 (21%), Positives = 17/47 (36%)
Query: 115 IDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC 161
+ D V+DIG G G + A ++ GL++
Sbjct: 74 VAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVA 120
>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing
protein METT10D {Human (Homo sapiens) [TaxId: 9606]}
Length = 250
Score = 29.4 bits (65), Expect = 0.45
Identities = 14/147 (9%), Positives = 36/147 (24%), Gaps = 6/147 (4%)
Query: 122 HDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGITNGYFI- 176
+DIG+G + FL E+ + + +++ + +++ +
Sbjct: 58 DKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVV 117
Query: 177 -ATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKV 235
T ++ P S ++
Sbjct: 118 KVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEI 177
Query: 236 FLQSDIEEVMLRMKQQFLEYGKGKLVL 262
+ E + R+ L+ K
Sbjct: 178 MAEGGELEFVKRIIHDSLQLKKRLRWY 204
>d1khba2 c.109.1.1 (A:10-259) Cytosolic phosphoenolpyruvate
carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 250
Score = 29.0 bits (65), Expect = 0.65
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 11/64 (17%)
Query: 85 MVESGSAVWEFL-----------KGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIG 133
M G+ V E L G LP L +P + + + H P + ++ G
Sbjct: 164 MTRMGTPVLEALGDGEFVKCLHSVGCPLPLQKPLVNNWPCNPELTLIAHLPDRREIISFG 223
Query: 134 SGNG 137
SG G
Sbjct: 224 SGYG 227
>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
methyltransferase Dot1l {Human (Homo sapiens) [TaxId:
9606]}
Length = 328
Score = 28.7 bits (63), Expect = 0.92
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 129 VVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC 161
VD+GSG G +L +A + G+E
Sbjct: 155 FVDLGSGVGQVVLQVAAATNCKHHYGVEKADIP 187
>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 292
Score = 28.0 bits (61), Expect = 1.4
Identities = 9/114 (7%), Positives = 37/114 (32%), Gaps = 4/114 (3%)
Query: 129 VVDIGSGNGLFLLGMARKRKDLNFLGL--ELVTHCRDSLQLSGITNGYFIATNATSTFRS 186
V+D+ G G+ + + + + + +++ + + + + +
Sbjct: 60 VLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT 119
Query: 187 IVASYPGKLILVSIQCPNPDFN--RPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 238
+ P ++ C F + R ++ ++ ++ G + +
Sbjct: 120 LDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID 173
>d1mu2a2 e.8.1.2 (A:3-429) HIV-1 reverse transcriptase {Human
immunodeficiency virus type 2 [TaxId: 11709]}
Length = 427
Score = 28.0 bits (62), Expect = 1.7
Identities = 8/49 (16%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 9 LSILGQGPWKRLLLQLQNVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQ 57
+ W + Q + ++ VG + + ++NG L ++ K+ +
Sbjct: 327 VQKDQDNQWTYKIHQEEKILKVG-KYAKVKNTHTNGIRLLAQVVQKIGK 374
>d2cw9a1 d.17.4.13 (A:270-451) Translocase of inner mitochondrial
membrane TIMM44 (TIM44), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 182
Score = 26.9 bits (59), Expect = 2.2
Identities = 10/32 (31%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Query: 219 RSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQ 250
R+L + V+DLL G +F ++++ EV+ + +
Sbjct: 8 RALTDKVTDLL---GGLFSKTEMSEVLTEILR 36
>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus
jannaschii [TaxId: 2190]}
Length = 230
Score = 27.0 bits (59), Expect = 2.9
Identities = 5/38 (13%), Positives = 11/38 (28%)
Query: 129 VVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ 166
++ +G+ G +A +E L
Sbjct: 78 ILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELL 115
>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia
carotovora [TaxId: 554]}
Length = 225
Score = 26.8 bits (58), Expect = 3.4
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 129 VVDIGSGNGLFLLGMARKRKDL 150
++++GS G F + D+
Sbjct: 24 LLELGSFKGDFTSRLQEHFNDI 45
>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain
{Thermus aquaticus [TaxId: 271]}
Length = 223
Score = 26.6 bits (57), Expect = 3.9
Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 1/89 (1%)
Query: 129 VVDIGSGNGLFLLGMARKRKD-LNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSI 187
V++ +G FL F+G+E+ D + F+ F I
Sbjct: 23 VLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAEGILADFLLWEPGEAFDLI 82
Query: 188 VASYPGKLILVSIQCPNPDFNRPEHRWRM 216
+ + P ++ + + P F + ++
Sbjct: 83 LGNPPYGIVGEASKYPIHVFKAVKDLYKK 111
>d2ooja1 b.159.2.1 (A:2-134) Hypothetical protein SO1590 {Shewanella
oneidensis [TaxId: 70863]}
Length = 133
Score = 25.9 bits (57), Expect = 4.3
Identities = 12/69 (17%), Positives = 18/69 (26%), Gaps = 10/69 (14%)
Query: 133 GSGNGLFLLGMARKRKDLNFLGLELVT------HCRDSLQLSGITNGYFIATNATSTFRS 186
G L M + ++ +E V LQ GI
Sbjct: 43 ARSQGEMLSAMTAVKGSAGYVAIEQVVGKLCGRQGSFVLQHFGI----MTDGQNRLHLEV 98
Query: 187 IVASYPGKL 195
+ S G+L
Sbjct: 99 VPHSGAGEL 107
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli
[TaxId: 562]}
Length = 245
Score = 26.1 bits (56), Expect = 5.4
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 129 VVDIGSGNGLFLLGMARK 146
++D+GSG+G L AR
Sbjct: 37 ILDLGSGSGEMLCTWARD 54
>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371
{Clostridium acetobutylicum [TaxId: 1488]}
Length = 246
Score = 26.2 bits (56), Expect = 5.7
Identities = 7/48 (14%), Positives = 15/48 (31%), Gaps = 9/48 (18%)
Query: 108 DRAFPFDIDWSA---------AYHDPAQPLVVDIGSGNGLFLLGMARK 146
D+ D+D+ ++ +D+ G G + K
Sbjct: 11 DKLIRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK 58
>d1v77a_ c.6.3.2 (A:) Ribonuclease P protein component 3, Rnp3
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 202
Score = 25.6 bits (56), Expect = 6.1
Identities = 11/73 (15%), Positives = 23/73 (31%), Gaps = 12/73 (16%)
Query: 176 IATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKV 235
++ S R V + LI V + + R +E D ++
Sbjct: 53 LSNPKPSLVRDTVQKFKSYLIYV--ESNDLRVIR----------YSIEKGVDAIISPWVN 100
Query: 236 FLQSDIEEVMLRM 248
I+ V+ ++
Sbjct: 101 RKDPGIDHVLAKL 113
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis
[TaxId: 1423]}
Length = 234
Score = 26.1 bits (56), Expect = 6.2
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 129 VVDIGSGNGLFLLGMARK 146
V+DIG+G G L +
Sbjct: 20 VLDIGAGAGHTALAFSPY 37
>d1r5ja_ c.77.1.5 (A:) Phosphotransacetylase Pta {Streptococcus
pyogenes [TaxId: 1314]}
Length = 329
Score = 25.8 bits (56), Expect = 6.5
Identities = 9/53 (16%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 216 MVQRSLVEAVSDLLVHDGK--VFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDE 266
M RSL + + ++ VF + + +E ++R + G + +++
Sbjct: 1 MSIRSLFGGLREKILGKNMKIVFPEGN-DERVVRAAARLKFEGLLEPIILGQS 52
>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa
(Medicago sativa) [TaxId: 3879]}
Length = 244
Score = 25.8 bits (56), Expect = 6.6
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 129 VVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGIT 171
+VD+G G+G L + K + + +L ++ LSGI
Sbjct: 85 LVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIE 127
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus
halodurans [TaxId: 86665]}
Length = 231
Score = 25.8 bits (55), Expect = 7.4
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 129 VVDIGSGNGLFLLGMARK 146
V+D+ +G G A
Sbjct: 19 VLDVATGGGHVANAFAPF 36
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.137 0.422
Gapped
Lambda K H
0.267 0.0452 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,152,879
Number of extensions: 51091
Number of successful extensions: 146
Number of sequences better than 10.0: 1
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 30
Length of query: 311
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 226
Effective length of database: 1,240,546
Effective search space: 280363396
Effective search space used: 280363396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.9 bits)