BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021568
(311 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C2N|A Chain A, Structure Of Human Mitochondrial Malonyltransferase
pdb|2C2N|B Chain B, Structure Of Human Mitochondrial Malonyltransferase
Length = 339
Score = 210 bits (534), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 120/307 (39%), Positives = 167/307 (54%), Gaps = 12/307 (3%)
Query: 6 SLLLFYVLSQGAQAVGMGKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIIS 65
S+LLF QG+Q VGMG+ + P ELY A +LG+DLLE+ +GP+E LD T+
Sbjct: 27 SVLLF--PGQGSQVVGMGRGLLNYPRVRELYAAARRVLGYDLLELSLHGPQETLDRTVHC 84
Query: 66 QPAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLR 125
QPAI+V SLAAVE L +I++ G S+GE+ AL FAGA F +GL VK+R
Sbjct: 85 QPAIFVASLAAVEKLHHLQ--PSVIENCVAAAGFSVGEFAALVFAGAMEFAEGLYAVKIR 142
Query: 126 GAAMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVD----EDNKVQIANYLCPGNYAV 181
AMQEA++A M+S++G K C A + E+ +++NYL P +
Sbjct: 143 AEAMQEASEAVPSGMLSVLGQPQSKFNFACLEAREHCKSLGIENPVCEVSNYLFPDCRVI 202
Query: 182 SGGVKGIEAVEAKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQINTPRMPVI 241
SG + + ++ + F R T L V+GAFHT MEPAV L AL A I P + V
Sbjct: 203 SGHQEALRFLQKNSSKFHFRRTRMLPVSGAFHTRLMEPAVEPLTQALKAVDIKKPLVSVY 262
Query: 242 SNVDAQPHADPEVIKKILAQQVTSPVQWEXXXXXXXXXXX----XXSYELGPGKVIAGIV 297
SNV + P I K+LAQQ+ SPV+WE ++E+GPG+ + I+
Sbjct: 263 SNVHGHRYRHPGHIHKLLAQQLVSPVKWEQTMHAIYERKKGRGFPQTFEVGPGRQLGAIL 322
Query: 298 KRLDKSA 304
K + A
Sbjct: 323 KSCNMQA 329
>pdb|3QAT|A Chain A, Crystal Structure Of
Acyl-Carrier-Protein-S-Malonyltransferase From
Bartonella Henselae
pdb|3QAT|B Chain B, Crystal Structure Of
Acyl-Carrier-Protein-S-Malonyltransferase From
Bartonella Henselae
Length = 318
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 102/302 (33%), Positives = 157/302 (51%), Gaps = 7/302 (2%)
Query: 10 FYVLSQGAQAVGMGKE-AQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPA 68
F QG+Q +GMGK + AA ++++ +D L L +I GP + L T +QPA
Sbjct: 9 FTFPGQGSQLIGMGKVLTEQFVAARMVFEEVDDALSEKLSDIIFEGPADVLTLTANAQPA 68
Query: 69 IYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGAA 128
+ S+A + ++ G + V G SLGEY+AL AG FS D +L+++RG A
Sbjct: 69 LMAVSMAVIRVMEQL--GLNVEKKVKFVAGHSLGEYSALCAAGTFSLTDTARLLRIRGNA 126
Query: 129 MQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVKGI 188
MQ A +G+M ++IGLD V+++C+ V E+ QIAN G +SG K +
Sbjct: 127 MQAAVAVGEGSMAALIGLDEKDVEEICEI----VAEEGLCQIANDNGGGQIVISGEAKAV 182
Query: 189 EAVEAKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQINTPRMPVISNVDAQP 248
E A A+ V L V+ FH+ M+PA + ++ AL P +P+I+NV P
Sbjct: 183 ETAVEVASQKGAKRAVLLPVSAPFHSALMQPAANAMKNALLTVNKTAPIVPLIANVSVIP 242
Query: 249 HADPEVIKKILAQQVTSPVQWEXXXXXXXXXXXXXSYELGPGKVIAGIVKRLDKSAEMEN 308
+DPE I +L QQVT V+W +E+G GKV+ G+ +R++K +
Sbjct: 243 ESDPERIVSLLVQQVTGRVRWRETIEWISANGVNTLFEIGSGKVLTGLARRINKDIKALT 302
Query: 309 IG 310
+G
Sbjct: 303 VG 304
>pdb|3PTW|A Chain A, Crystal Structure Of Malonyl Coa-Acyl Carrier Protein
Transacylase From Clostridium Perfringens Atcc 13124
Length = 336
Score = 169 bits (427), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 103/301 (34%), Positives = 165/301 (54%), Gaps = 12/301 (3%)
Query: 10 FYVLSQGAQAVGMGKEA-QSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPA 68
F QGAQ VGMGKE + + E++K++++ LG D+ E+C N P+ L+ T +QPA
Sbjct: 6 FLFAGQGAQYVGMGKEFFDNFEESKEVFKRSSEALGIDMEELCFNDPEGLLNKTEFTQPA 65
Query: 69 IYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGAA 128
I T++A +L A D ++ ++CGLSLGEY+AL +GA +FEDG+KLVK RG
Sbjct: 66 IITTNMA---ILTALD---KLGVKSHISCGLSLGEYSALIHSGAINFEDGVKLVKKRGKF 119
Query: 129 MQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVKGI 188
MQEA G MV+++ + ++V ++ + ++ V+ ANY PG +SG + +
Sbjct: 120 MQEAVAEGIGGMVAVLRMTPEQVDEIIEKSSPY----GIVEGANYNSPGQIVISGELVAL 175
Query: 189 EAVEAKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQINTPRMPVISNVDAQP 248
E K R ++L V+ FH ++PA +LE L IN V+SNV +
Sbjct: 176 EKAMEFIKEVGGR-AIKLPVSAPFHCSMLQPAAEKLEDELNKISINKLNGIVMSNVKGEA 234
Query: 249 HADPEVIKKILAQQVTSPVQWEXXXXXXXXXXXXXSYELGPGKVIAGIVKRLDKSAEMEN 308
+ + + I ++L QV PV + E+GPGK ++G VK+++K+ + N
Sbjct: 235 YLEDDNIIELLTSQVKKPVLFINDIEKMIESGVDTFIEIGPGKALSGFVKKINKNVTVLN 294
Query: 309 I 309
+
Sbjct: 295 V 295
>pdb|2G1H|A Chain A, Structure Of E.Coli Fabd Complexed With Glycerol
pdb|2G2O|A Chain A, Structure Of E.Coli Fabd Complexed With Sulfate
pdb|2G2Y|A Chain A, Structure Of E.Coli Fabd Complexed With Malonate
pdb|2G2Z|A Chain A, Structure Of E.coli Fabd Complexed With Malonyl-coa
Length = 308
Score = 166 bits (420), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 100/292 (34%), Positives = 150/292 (51%), Gaps = 10/292 (3%)
Query: 10 FYVLSQGAQAVGM-GKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPA 68
F QG+Q VGM A S P E + +A+ LG+DL + GP E+L+ T +QPA
Sbjct: 5 FVFPGQGSQTVGMLADMAASYPIVEETFAEASAALGYDLWALTQQGPAEELNKTWQTQPA 64
Query: 69 IYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGAA 128
+ S+A + + + G + + G SLGEY+AL AG F D ++LV++RG
Sbjct: 65 LLTASVALYRVWQQQGG-----KAPAMMAGHSLGEYSALVCAGVIDFADAVRLVEMRGKF 119
Query: 129 MQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVKGI 188
MQEA GAM +IIGLD + + C+ E E V N+ PG ++G + +
Sbjct: 120 MQEAVPEGTGAMAAIIGLDDASIAKACE----EAAEGQVVSPVNFNSPGQVVIAGHKEAV 175
Query: 189 EAVEAKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQINTPRMPVISNVDAQP 248
E A K+ A+ + L V+ H M+PA +L LA N P +PV++NVD +
Sbjct: 176 ERAGAACKAAGAKRALPLPVSVPSHCALMKPAADKLAVELAKITFNAPTVPVVNNVDVKC 235
Query: 249 HADPEVIKKILAQQVTSPVQWEXXXXXXXXXXXXXSYELGPGKVIAGIVKRL 300
+ + I+ L +Q+ +PVQW YE+GPGKV+ G+ KR+
Sbjct: 236 ETNGDAIRDALVRQLYNPVQWTKSVEYMAAQGVEHLYEVGPGKVLTGLTKRI 287
>pdb|1MLA|A Chain A, The Escherichia Coli Malonyl-Coa:acyl Carrier Protein
Transacylase At 1.5-Angstroms Resolution. Crystal
Structure Of A Fatty Acid Synthase Component
Length = 309
Score = 166 bits (420), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 100/292 (34%), Positives = 150/292 (51%), Gaps = 10/292 (3%)
Query: 10 FYVLSQGAQAVGM-GKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPA 68
F QG+Q VGM A S P E + +A+ LG+DL + GP E+L+ T +QPA
Sbjct: 6 FVFPGQGSQTVGMLADMAASYPIVEETFAEASAALGYDLWALTQQGPAEELNKTWQTQPA 65
Query: 69 IYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGAA 128
+ S+A + + + G + + G SLGEY+AL AG F D ++LV++RG
Sbjct: 66 LLTASVALYRVWQQQGG-----KAPAMMAGHSLGEYSALVCAGVIDFADAVRLVEMRGKF 120
Query: 129 MQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVKGI 188
MQEA GAM +IIGLD + + C+ E E V N+ PG ++G + +
Sbjct: 121 MQEAVPEGTGAMAAIIGLDDASIAKACE----EAAEGQVVSPVNFNSPGQVVIAGHKEAV 176
Query: 189 EAVEAKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQINTPRMPVISNVDAQP 248
E A K+ A+ + L V+ H M+PA +L LA N P +PV++NVD +
Sbjct: 177 ERAGAACKAAGAKRALPLPVSVPSHCALMKPAADKLAVELAKITFNAPTVPVVNNVDVKC 236
Query: 249 HADPEVIKKILAQQVTSPVQWEXXXXXXXXXXXXXSYELGPGKVIAGIVKRL 300
+ + I+ L +Q+ +PVQW YE+GPGKV+ G+ KR+
Sbjct: 237 ETNGDAIRDALVRQLYNPVQWTKSVEYMAAQGVEHLYEVGPGKVLTGLTKRI 288
>pdb|3K89|A Chain A, Structure Of X. Oryzae Pv. Oryzae Kacc10331, Xoo0880(Fabd)
Complexed With Glycerol
pdb|3R97|A Chain A, Crystal Structure Of Malonyl-Coa:acyl Carrier Protein
Transacylase (Fabd), Xoo0880, From Xanthomonas Oryzae
Pv. Oryzae Kacc10331
Length = 314
Score = 166 bits (420), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 107/303 (35%), Positives = 156/303 (51%), Gaps = 12/303 (3%)
Query: 3 MARSLLLFYVLSQGAQAVGMGKEAQSV-PAAAELYKKANDILGFDLLEICTNGPKEKLDS 61
M S L F QG+Q++GM E + P E + +A++ G DL + GP+E L+
Sbjct: 1 MTESTLAFVFPGQGSQSLGMLAELSELHPQIRETFAEASEGAGVDLWALSQGGPEEMLNR 60
Query: 62 TIISQPAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKL 121
T +QPA+ +A L A+ G + + G SLGEYTAL AG S DG L
Sbjct: 61 TEYTQPALLAAGVAVWRLWTAQRGQRPAL-----LAGHSLGEYTALVAAGVLSLHDGAHL 115
Query: 122 VKLRGAAMQEAADAAKGAMVSIIGLDSDKVQQLC-DAANQEVDEDNKVQIANYLCPGNYA 180
V+LRG MQ AA A GAM +++G + V ++C +AA +V V AN+ PG
Sbjct: 116 VRLRGQFMQAAAPAGVGAMAAVLGAEDAVVLEVCAEAAGSQV-----VVPANFNSPGQIV 170
Query: 181 VSGGVKGIEAVEAKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQINTPRMPV 240
+ G ++ A R V+LAV+ HT M A ++L A+A + P++PV
Sbjct: 171 IGGDAAAVDRALALLAERGVRKAVKLAVSVPSHTPLMRDAANQLGEAMAGLSWHAPQIPV 230
Query: 241 ISNVDAQPHADPEVIKKILAQQVTSPVQWEXXXXXXXXXXXXXSYELGPGKVIAGIVKRL 300
+ NVDA+ H I++ L +Q+ PVQW E GPGKV++G++KR+
Sbjct: 231 VQNVDARVHDGSAAIRQALVEQLYLPVQWTGCVQALASQGITRIAECGPGKVLSGLIKRI 290
Query: 301 DKS 303
DKS
Sbjct: 291 DKS 293
>pdb|3EZO|A Chain A, Crystal Structure Of Acyl-Carrier-Protein S-
Malonyltransferase From Burkholderia Pseudomallei 1710b
Length = 318
Score = 165 bits (417), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 98/292 (33%), Positives = 143/292 (48%), Gaps = 9/292 (3%)
Query: 10 FYVLSQGAQAVGMGKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPAI 69
F QG+Q+VGM V E +A+D LG D+ ++ +GP ++L+ T +QP +
Sbjct: 13 FVFPGQGSQSVGMLNAFADVAVVRETLDEASDALGQDIGKLIADGPADELNLTTNTQPVM 72
Query: 70 YVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGAAM 129
+ A + G Q + G SLGEYTAL AGA +F D L LV+ R AM
Sbjct: 73 LTAAYACYRAWQQAGGAQP-----SIVAGHSLGEYTALVAAGAIAFRDALPLVRFRAQAM 127
Query: 130 QEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVKGIE 189
Q A G M +I+GLD D V+ +C E V+ N+ P ++G GIE
Sbjct: 128 QTAVPVGVGGMAAILGLDDDTVRAVC----AEASATGVVEAVNFNAPAQVVIAGTKAGIE 183
Query: 190 AVEAKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQINTPRMPVISNVDAQPH 249
AK A+ + L V+ FH+ ++PA +L LA + P++ V++N+D
Sbjct: 184 KACEIAKEKGAKRALPLPVSAPFHSSLLKPASDKLREYLAGVDVKAPKISVVNNIDVAVV 243
Query: 250 ADPEVIKKILAQQVTSPVQWEXXXXXXXXXXXXXSYELGPGKVIAGIVKRLD 301
+DP IK L +Q PV+W E GPGKV+AG+ KR+D
Sbjct: 244 SDPAAIKDALVRQAAGPVRWVECVQHIAREGVTHVIECGPGKVLAGLTKRID 295
>pdb|3IM9|A Chain A, Crystal Structure Of Mcat From Staphylococcus Aureus
Length = 316
Score = 162 bits (409), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 99/296 (33%), Positives = 156/296 (52%), Gaps = 12/296 (4%)
Query: 15 QGAQAVGMGKEA-QSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPAIYVTS 73
QGAQ VGM ++ + A E+ A L FD+LE + KL T +QPA+ S
Sbjct: 19 QGAQKVGMAQDLFNNNDQATEILTSAAKTLDFDILETMFTDEEGKLGETENTQPALLTHS 78
Query: 74 LAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGAAMQEAA 133
A + L+ + D T G SLGEY++L A SFED +K+V+ RG M +A
Sbjct: 79 SALLAALKNLNP--------DFTMGHSLGEYSSLVAADVLSFEDAVKIVRKRGQLMAQAF 130
Query: 134 DAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVKGIEAVEA 193
G+M +++GLD DKV ++C + + + D ++ AN CPG VSG I+ +
Sbjct: 131 PTGVGSMAAVLGLDFDKVDEICKSLSSD---DKIIEPANINCPGQIVVSGHKALIDELVE 187
Query: 194 KAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQINTPRMPVISNVDAQPHADPE 253
K KS A+ + LAV+G FH+ M+ + + + + PV+ NV+AQ D E
Sbjct: 188 KGKSLGAKRVMPLAVSGPFHSSLMKVIEEDFSSYINQFEWRDAKFPVVQNVNAQGETDKE 247
Query: 254 VIKKILAQQVTSPVQWEXXXXXXXXXXXXXSYELGPGKVIAGIVKRLDKSAEMENI 309
VIK + +Q+ SPVQ+ E+GPGKV++G++K++++ ++ +I
Sbjct: 248 VIKSNMVKQLYSPVQFINSTEWLIDQGVDHFIEIGPGKVLSGLIKKINRDVKLTSI 303
>pdb|3IM8|A Chain A, Crystal Structure Of Mcat From Streptococcus Pneumoniae
Length = 307
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 103/308 (33%), Positives = 162/308 (52%), Gaps = 15/308 (4%)
Query: 3 MARSLLLFYVLSQGAQAVGMGKE-AQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDS 61
M ++ LF QGAQ +GMG++ P E +A+ +LG+DL + ++KL+
Sbjct: 1 MTKTAFLF--AGQGAQYLGMGRDFYDQYPIVKETIDRASQVLGYDL-RYLIDTEEDKLNQ 57
Query: 62 TIISQPAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKL 121
T +QPAI TS+A LL+ + G Q D+ GLSLGEY+AL +GA FED + L
Sbjct: 58 TRYTQPAILATSVAIYRLLQEK--GYQ----PDMVAGLSLGEYSALVASGALDFEDAVAL 111
Query: 122 VKLRGAAMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAV 181
V RGA M+EAA A G MV+++ + +++ C Q+ E V ANY P +
Sbjct: 112 VAKRGAYMEEAAPADSGKMVAVLNTPVEVIEEAC----QKASELGVVTPANYNTPAQIVI 167
Query: 182 SGGVKGIEAVEAKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQINTPRMPVI 241
+G V ++ + A+ + L V+G FHT +EPA +L LA + P++
Sbjct: 168 AGEVVAVDRAVELLQEAGAKRLIPLKVSGPFHTSLLEPASQKLAETLAQVSFSDFTCPLV 227
Query: 242 SNVDAQPHADPEVIKKILAQQVTSPVQWEXXXXXXXXXXXXXSYELGPGKVIAGIVKRLD 301
N +A E I ++L +QV PV++ E+GPGKV++G VK++D
Sbjct: 228 GNTEAAVM-QKEDIAQLLTRQVKEPVRFYESIGVMQEAGISNFIEIGPGKVLSGFVKKID 286
Query: 302 KSAEMENI 309
++A + ++
Sbjct: 287 QTAHLAHV 294
>pdb|3TQE|A Chain A, Structure Of The Malonyl Coa-Acyl Carrier Protein
Transacylase (Fabd) From Coxiella Burnetii
Length = 316
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 96/299 (32%), Positives = 153/299 (51%), Gaps = 12/299 (4%)
Query: 10 FYVLSQGAQAVG-MGKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPA 68
F QG+Q +G + + P E +++A+ L +DL + +GP+E+LD T +QPA
Sbjct: 10 FVFPGQGSQHLGXLAELGLQQPIVLETFQQASSALAYDLWALVQHGPQERLDQTQFTQPA 69
Query: 69 IYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGAA 128
+ +A A G + V G SLGEY AL AGA FE+ +KLV+ RG
Sbjct: 70 LLTADVAIFRCWEALGGPKP-----QVXAGHSLGEYAALVCAGALKFEEAVKLVEKRGQY 124
Query: 129 MQEAADAAKGAMVSIIGLDSDKVQQLC-DAANQEVDEDNKVQIANYLCPGNYAVSGGVKG 187
QEA +GA +IIGL+ +++ +C +AA +V VQ AN +SG +
Sbjct: 125 XQEAVPVGEGAXGAIIGLNEAEIESICENAALGQV-----VQPANLNSTDQTVISGHSEA 179
Query: 188 IEAVEAKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQINTPRMPVISNVDAQ 247
++ AK+ A++ R+ V+ H +PA RL +A I++P++PVI NVD
Sbjct: 180 VDRALNXAKTEGAKIAKRIPVSVPSHCPLXQPAADRLAQDIAKISIDSPKVPVIHNVDVV 239
Query: 248 PHADPEVIKKILAQQVTSPVQWEXXXXXXXXXXXXXSYELGPGKVIAGIVKRLDKSAEM 306
H + +I+ L +Q+ PV+W E GP +AG++KR+D+ +E+
Sbjct: 240 DHNEANIIRGALIKQLVRPVRWVETIKYIEEQGIKVFXECGPDNKLAGLIKRIDRQSEI 298
>pdb|3H0P|A Chain A, 2.0 Angstrom Crystal Structure Of An Acyl Carrier Protein
S- Malonyltransferase From Salmonella Typhimurium.
pdb|3H0P|B Chain B, 2.0 Angstrom Crystal Structure Of An Acyl Carrier Protein
S- Malonyltransferase From Salmonella Typhimurium
Length = 312
Score = 152 bits (385), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 95/298 (31%), Positives = 149/298 (50%), Gaps = 10/298 (3%)
Query: 4 ARSLLLFYVLSQGAQAVG-MGKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDST 62
A + F QG+Q+VG + + A + P E + +A+ LG+DL + GP E+L+ T
Sbjct: 3 AXTQFAFVFPGQGSQSVGXLAEXAANYPIVEETFAEASAALGYDLWALTQQGPAEELNKT 62
Query: 63 IISQPAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLV 122
+QPA+ S+A + + + G + + G SLGEY+AL AG +F D ++LV
Sbjct: 63 WQTQPALLTASVALWRVWQQQGGKXPALXA-----GHSLGEYSALVCAGVINFADAVRLV 117
Query: 123 KLRGAAMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVS 182
+ RG QEA G +IIGLD + + C+ E E V N+ PG ++
Sbjct: 118 EXRGKFXQEAVPEGTGGXSAIIGLDDASIAKACE----ESAEGQVVSPVNFNSPGQVVIA 173
Query: 183 GGVKGIEAVEAKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQINTPRMPVIS 242
G + +E A K+ A+ + L V+ H +PA +L LA + P +PV++
Sbjct: 174 GHKEAVERAGAACKAAGAKRALPLPVSVPSHCALXKPAADKLAVELAKITFSAPTVPVVN 233
Query: 243 NVDAQPHADPEVIKKILAQQVTSPVQWEXXXXXXXXXXXXXSYELGPGKVIAGIVKRL 300
NVD + D I+ L +Q+ +PVQW YE+GPGKV+ G+ KR+
Sbjct: 234 NVDVKCETDAAAIRDALVRQLYNPVQWTKSVEFIAAQGVEHLYEVGPGKVLTGLTKRI 291
>pdb|2CUY|A Chain A, Crystal Structure Of Malonyl Coa-acyl Carrier Protein
Transacylase From Thermus Thermophilus Hb8
pdb|2CUY|B Chain B, Crystal Structure Of Malonyl Coa-acyl Carrier Protein
Transacylase From Thermus Thermophilus Hb8
Length = 305
Score = 151 bits (381), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 106/293 (36%), Positives = 150/293 (51%), Gaps = 17/293 (5%)
Query: 15 QGAQAVGMGKEA-QSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPAIYVTS 73
QG+ VGMG+ ++ PAA E+ +A L LL++ GP+E L T QPA+
Sbjct: 9 QGSHRVGMGRALYEASPAAKEVLDRAEAALP-GLLKLMWEGPEEALTLTENQQPALLAAG 67
Query: 74 LAAVE-LLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGAAMQEA 132
AA L A GG+ + G SLGE+TA AG ED L+LV+LRG MQEA
Sbjct: 68 YAAYRAFLEA--GGK----PPALAAGHSLGEWTAHVAAGTLELEDALRLVRLRGRYMQEA 121
Query: 133 ADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVKGIEAVE 192
+GAM +++ L +++Q+ + V+IAN P +SG + +E
Sbjct: 122 VPVGEGAMAAVLKLPLEEIQKALEGLE-------GVEIANLNAPEQTVISGRRQAVEEAA 174
Query: 193 AKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQINTPRMPVISNVDAQPHADP 252
+ K +AR+ V L V+ FH+ M PA RL LA + PR PV SNV A+P DP
Sbjct: 175 ERLKERRARV-VFLPVSAPFHSSLMAPARKRLAEDLAQVPLRRPRFPVYSNVTARPEEDP 233
Query: 253 EVIKKILAQQVTSPVQWEXXXXXXXXXXXXXSYELGPGKVIAGIVKRLDKSAE 305
E I+ +L +Q+T+PV+W E G G+V+ G+V R K AE
Sbjct: 234 ERIRALLLEQITAPVRWVEILRDMEARGVKRFLEFGSGEVLKGLVLRTLKEAE 286
>pdb|3HJV|A Chain A, 1.7 Angstrom Resolution Crystal Structure Of An Acyl
Carrier Protein S-Malonyltransferase From Vibrio
Cholerae O1 Biovar Eltor Str. N16961
pdb|3HJV|B Chain B, 1.7 Angstrom Resolution Crystal Structure Of An Acyl
Carrier Protein S-Malonyltransferase From Vibrio
Cholerae O1 Biovar Eltor Str. N16961
Length = 312
Score = 149 bits (377), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 148/292 (50%), Gaps = 10/292 (3%)
Query: 15 QGAQAVG-MGKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPAIYVTS 73
QG+QAVG + A+ + + +A+++LG+DL + +GP E L+ T +QPA+ S
Sbjct: 16 QGSQAVGXLADLAEQYAVVKQTFAEASEVLGYDLWALVQDGPVEDLNQTFRTQPALLAAS 75
Query: 74 LAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGAAMQEAA 133
+A + + Q ++ V G SLGEY+AL AG F+ +KLV+LRG Q+A
Sbjct: 76 VAIWRVWQ-----QLGLEQPAVLAGHSLGEYSALVCAGVIDFKQAIKLVELRGQLXQQAV 130
Query: 134 DAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVKGIEAVEA 193
A GA +IIGL+ + + + C A Q V N+ PG ++G +E
Sbjct: 131 PAGTGAXYAIIGLEDEAIAKACADAAQ----GEVVSPVNFNSPGQVVIAGQKDAVERAGV 186
Query: 194 KAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQINTPRMPVISNVDAQPHADPE 253
K A+ + L V+ H +PA L LA + N P++PVI+NVD DP
Sbjct: 187 LCKEAGAKRALPLPVSVPSHCALXKPAADELAKTLAELEFNAPQIPVINNVDVVAETDPV 246
Query: 254 VIKKILAQQVTSPVQWEXXXXXXXXXXXXXSYELGPGKVIAGIVKRLDKSAE 305
IK L +Q+ SPV+W E GPGKV+ G+ KR+ K+ E
Sbjct: 247 KIKDALIRQLYSPVRWTECVEQXSAQGVEKLIEXGPGKVLTGLTKRIVKTLE 298
>pdb|3RGI|A Chain A, Trans-Acting Transferase From Disorazole Synthase
Length = 286
Score = 145 bits (366), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 98/292 (33%), Positives = 149/292 (51%), Gaps = 19/292 (6%)
Query: 15 QGAQAVGMGKEA-QSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPAIYVTS 73
QG+QA GMG+ + PA L +A+ +LG+ + +C + P ++L T +QPA+YV +
Sbjct: 9 QGSQAKGMGRALFDAFPA---LTARADGVLGYSIRALCQDDPDQRLSQTQFTQPALYVVN 65
Query: 74 LAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGAAMQEAA 133
A+ L+ R+ D G SLGE++AL AG F FE GL LVK RG M
Sbjct: 66 --ALSYLKRREEEA----PPDFLAGHSLGEFSALFAAGVFDFETGLALVKKRGELM---G 116
Query: 134 DAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVKGIEAVEA 193
DA G M ++IGLD ++V++L D + V IAN P +SG I ++
Sbjct: 117 DARGGGMAAVIGLDEERVRELLDQ-----NGATAVDIANLNSPSQVVISGAKDEIARLQV 171
Query: 194 KAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQINTPRMPVISNVDAQPHADPE 253
++ A+ L V+ AFH+ FM PA+ L P++PVISNV A+P +
Sbjct: 172 PFEAAGAKKYTVLRVSAAFHSRFMRPAMVEFGRFLEGYDFAPPKIPVISNVTARP-CKAD 230
Query: 254 VIKKILAQQVTSPVQWEXXXXXXXXXXXXXSYELGPGKVIAGIVKRLDKSAE 305
I+ L++Q+ SPV+W E G G V+ G+ ++ + A+
Sbjct: 231 GIRAALSEQIASPVRWCESIRYLMGRGVEEFVECGHGIVLTGLYAQIRRDAQ 282
>pdb|3SBM|A Chain A, Trans-Acting Transferase From Disorazole Synthase In
Complex With Acetate
Length = 281
Score = 144 bits (364), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 98/291 (33%), Positives = 148/291 (50%), Gaps = 19/291 (6%)
Query: 15 QGAQAVGMGKEA-QSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPAIYVTS 73
QG+QA GMG+ + PA L +A+ +LG+ + +C + P ++L T +QPA+YV +
Sbjct: 9 QGSQAKGMGRALFDAFPA---LTARADGVLGYSIRALCQDDPDQRLSQTQFTQPALYVVN 65
Query: 74 LAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGAAMQEAA 133
A+ L+ R+ D G SLGE++AL AG F FE GL LVK RG M
Sbjct: 66 --ALSYLKRREEEA----PPDFLAGHSLGEFSALFAAGVFDFETGLALVKKRGELM---G 116
Query: 134 DAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVKGIEAVEA 193
DA G M ++IGLD ++V++L D + V IAN P +SG I ++
Sbjct: 117 DARGGGMAAVIGLDEERVRELLDQ-----NGATAVDIANLNSPSQVVISGAKDEIARLQV 171
Query: 194 KAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQINTPRMPVISNVDAQPHADPE 253
++ A+ L V+ AFH+ FM PA+ L P++PVISNV A+P +
Sbjct: 172 PFEAAGAKKYTVLRVSAAFHSRFMRPAMVEFGRFLEGYDFAPPKIPVISNVTARP-CKAD 230
Query: 254 VIKKILAQQVTSPVQWEXXXXXXXXXXXXXSYELGPGKVIAGIVKRLDKSA 304
I+ L++Q+ SPV+W E G G V+ G+ ++ + A
Sbjct: 231 GIRAALSEQIASPVRWCESIRYLMGRGVEEFVECGHGIVLTGLYAQIRRDA 281
>pdb|3G87|A Chain A, Crystal Structure Of Malonyl Coa-Acyl Carrier Protein
Transacylase From Burkholderia Pseudomallei Using Dried
Seaweed As Nucleant Or Protease
Length = 394
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 95/263 (36%), Positives = 139/263 (52%), Gaps = 17/263 (6%)
Query: 7 LLLFYVLSQGAQAVGMGKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQ 66
L F QG+QA GMG A+L +A+ +LG+ + +C + P+++L T +Q
Sbjct: 6 LNTFMFPGQGSQAKGMG--GALFDRFADLTAQADAVLGYSIRALCVDDPRDELGRTQFTQ 63
Query: 67 PAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRG 126
PA+YV + A + D G+ + D G SLGE+ AL AG F FE GLKLV R
Sbjct: 64 PALYVVN-ALTYYAKCEDSGE----TPDFLAGHSLGEFNALLAAGCFDFETGLKLVARRA 118
Query: 127 AAMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVK 186
M +A D GAM +I+ +++++ D + VD IAN P +SG
Sbjct: 119 ELMSQARD---GAMAAIVNASREQIERTLD-EHGLVD----TAIANDNTPSQLVISGPAH 170
Query: 187 GIEAVEAKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQINTPRMPVISNVDA 246
I EA + + R +RL +GAFH+ FM PA A L + ++ P +PVISNV A
Sbjct: 171 EIARAEALFQHDRVRY-LRLNTSGAFHSKFMRPAQQAFAAHLQSFRLADPAIPVISNVSA 229
Query: 247 QPHADPEVIKKILAQQVTSPVQW 269
+P+ + V + LAQQ+ SPV+W
Sbjct: 230 RPYENGRVSEG-LAQQIASPVRW 251
>pdb|2H1Y|A Chain A, Crystal Structure Of Malonyl-Coa:acyl Carrier Protein
Transacylase (Mcat) From Helicobacter Pylori
pdb|2H1Y|B Chain B, Crystal Structure Of Malonyl-Coa:acyl Carrier Protein
Transacylase (Mcat) From Helicobacter Pylori
Length = 321
Score = 114 bits (285), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 144/289 (49%), Gaps = 17/289 (5%)
Query: 15 QGAQAVGMGKE-AQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPAIYVTS 73
QG+Q +GMGK + A EL+++A++ L D+ + E L + +QPAIY+ S
Sbjct: 22 QGSQCIGMGKSFYEGHTLAKELFERASNALKVDMKKTLFE-ENELLKESAYTQPAIYLVS 80
Query: 74 LAAVELLRAR-DGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGAAMQEA 132
A +LL + +GG + + ++ G SLGE +A++ +GA FE LKL RG MQEA
Sbjct: 81 YIAYQLLNKQANGGLKPVFAL----GHSLGEVSAVSLSGALDFEKALKLTHQRGKMMQEA 136
Query: 133 ADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVK-GIEAV 191
+M+ ++G+ + + LC V AN+ G V GVK ++A+
Sbjct: 137 CANKDASMMVVLGVSEESLLSLCQRTKN-------VWCANF-NGGMQVVLAGVKDDLKAL 188
Query: 192 EAKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQINTPRMPVISNVDAQPHAD 251
E K A+ V L ++ A H F+EP + + + L + + +ISN + + +
Sbjct: 189 EPTLKEMGAKRVVFLEMSVASHCPFLEPMIFKFQELLEKSLKDKFHFEIISNATNEAYHN 248
Query: 252 PEVIKKILAQQVTSPVQWEXXXXXXXXXXXXXSYELGPGKVIAGIVKRL 300
++L+ Q+T PV+++ +ELG G V+ G+ KRL
Sbjct: 249 KAKAVELLSLQLTQPVRYQDCVKSNNDRVDIF-FELGCGSVLKGLNKRL 296
>pdb|2CDH|4 Chain 4, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|5 Chain 5, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|6 Chain 6, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|7 Chain 7, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|8 Chain 8, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|9 Chain 9, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|M Chain M, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|N Chain N, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|O Chain O, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|P Chain P, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|Q Chain Q, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|R Chain R, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 305
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/294 (29%), Positives = 127/294 (43%), Gaps = 18/294 (6%)
Query: 7 LLLFYVLSQGAQAVGMGKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQ 66
+L+ QGAQ G + ++P AA+ +D +G DL T +++ T ++Q
Sbjct: 2 MLVLVAPGQGAQTPGFLTDWLALPGAADRVAAWSDAIGLDLAHFGTKADADEIRDTSVAQ 61
Query: 67 PAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRG 126
P L A +L A G G S+GE TA FAG L LV+ RG
Sbjct: 62 PL-----LVAAGILSAAALGTGFTPGA--VAGHSVGEITAAVFAGVLDDTAALSLVRRRG 114
Query: 127 AAMQEAADAAKGAMVSIIGLDSD-KVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGV 185
AM EAA + M +++G D + V L E + AN G +G +
Sbjct: 115 LAMAEAAAVTETGMSALLGGDPEVSVAHL---------ERLGLTPANVNGAGQIVAAGTM 165
Query: 186 KGIEAVEAKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQINTPRMPVISNVD 245
+ + A+ + K R V L VAGAFHT M PAV +L A A P++ +SN D
Sbjct: 166 EQLAALN-EDKPEGVRKVVPLKVAGAFHTRHMAPAVDKLAEAAKALTPADPKVTYVSNKD 224
Query: 246 AQPHADPEVIKKILAQQVTSPVQWEXXXXXXXXXXXXXSYELGPGKVIAGIVKR 299
+ A + L QV +PV+W+ E+ PG + G+ KR
Sbjct: 225 GRAVASGTEVLDRLVGQVANPVRWDLCMETFKELGVTAIIEVCPGGTLTGLAKR 278
>pdb|2CF2|B Chain B, Architecture Of Mammalian Fatty Acid Synthase
pdb|2CF2|K Chain K, Architecture Of Mammalian Fatty Acid Synthase
Length = 304
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/294 (29%), Positives = 127/294 (43%), Gaps = 18/294 (6%)
Query: 7 LLLFYVLSQGAQAVGMGKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQ 66
+L+ QGAQ G + ++P AA+ +D +G DL T +++ T ++Q
Sbjct: 1 MLVLVAPGQGAQTPGFLTDWLALPGAADRVAAWSDAIGLDLAHFGTKADADEIRDTSVAQ 60
Query: 67 PAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRG 126
P L A +L A G G S+GE TA FAG L LV+ RG
Sbjct: 61 PL-----LVAAGILSAAALGTGFTPGA--VAGHSVGEITAAVFAGVLDDTAALSLVRRRG 113
Query: 127 AAMQEAADAAKGAMVSIIGLDSD-KVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGV 185
AM EAA + M +++G D + V L E + AN G +G +
Sbjct: 114 LAMAEAAAVTETGMSALLGGDPEVSVAHL---------ERLGLTPANVNGAGQIVAAGTM 164
Query: 186 KGIEAVEAKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQINTPRMPVISNVD 245
+ + A+ + K R V L VAGAFHT M PAV +L A A P++ +SN D
Sbjct: 165 EQLAALN-EDKPEGVRKVVPLKVAGAFHTRHMAPAVDKLAEAAKALTPADPKVTYVSNKD 223
Query: 246 AQPHADPEVIKKILAQQVTSPVQWEXXXXXXXXXXXXXSYELGPGKVIAGIVKR 299
+ A + L QV +PV+W+ E+ PG + G+ KR
Sbjct: 224 GRAVASGTEVLDRLVGQVANPVRWDLCMETFKELGVTAIIEVCPGGTLTGLAKR 277
>pdb|1NM2|A Chain A, "malonyl-Coa:acp Transacylase"
Length = 317
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 89/302 (29%), Positives = 131/302 (43%), Gaps = 24/302 (7%)
Query: 7 LLLFYVLSQGAQAVGMGKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQ 66
+L+ QGAQ G + ++P AA+ +D +G DL T +++ T ++Q
Sbjct: 2 MLVLVAPGQGAQTPGFLTDWLALPGAADRVAAWSDAIGLDLAHFGTKADADEIRDTSVAQ 61
Query: 67 PAIYVTSLAAVELLRARDGGQQ--IIDSVD------VTCGLSLGEYTALAFAGAFSFEDG 118
P L A +L A G Q + D+ G S+GE TA FAG
Sbjct: 62 PL-----LVAAGILSAAALGTQTSVADATGPGFTPGAVAGHSVGEITAAVFAGVLDDTAA 116
Query: 119 LKLVKLRGAAMQEAADAAKGAMVSIIGLDSD-KVQQLCDAANQEVDEDNKVQIANYLCPG 177
L LV+ RG AM EAA + M +++G D + V L E + AN G
Sbjct: 117 LSLVRRRGLAMAEAAAVTETGMSALLGGDPEVSVAHL---------ERLGLTPANVNGAG 167
Query: 178 NYAVSGGVKGIEAVEAKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQINTPR 237
+G ++ + A+ + K R V L VAGAFHT M PAV +L A A P+
Sbjct: 168 QIVAAGTMEQLAALN-EDKPEGVRKVVPLKVAGAFHTRHMAPAVDKLAEAAKALTPADPK 226
Query: 238 MPVISNVDAQPHADPEVIKKILAQQVTSPVQWEXXXXXXXXXXXXXSYELGPGKVIAGIV 297
+ +SN D + A + L QV +PV+W+ E+ PG + G+
Sbjct: 227 VTYVSNKDGRAVASGTEVLDRLVGQVANPVRWDLCMETFKELGVTAIIEVCPGGTLTGLA 286
Query: 298 KR 299
KR
Sbjct: 287 KR 288
>pdb|2QC3|A Chain A, Crystal Structure Of Mcat From Mycobacterium Tuberculosis
Length = 303
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 87/294 (29%), Positives = 128/294 (43%), Gaps = 31/294 (10%)
Query: 15 QGAQAVGMGKEAQSVPAAAE---LYKKANDILGFDLLEICTNGPKEKLDSTIISQPAIYV 71
QG+Q GM +P AA+ + KA D+ DL + T E++ T ++QP I
Sbjct: 10 QGSQTEGMLSPWLQLPGAADQIAAWSKAADL---DLARLGTTASTEEITDTAVAQPLIVA 66
Query: 72 TSLAAVELLRARD--GGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGAAM 129
+L A + L R G+ +I G S+GE A A AG + +D + L RGA M
Sbjct: 67 ATLLAHQELARRCVLAGKDVI-----VAGHSVGEIAAYAIAGVIAADDAVALAATRGAEM 121
Query: 130 QEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVKG-- 187
+A M +++G D +V +++D L P N +G +
Sbjct: 122 AKACATEPTGMSAVLGGDETEVLSRL----EQLD----------LVPANRNAAGQIVAAG 167
Query: 188 -IEAVEAKAKSFKARMTVR-LAVAGAFHTGFMEPAVSRLEAALAATQINTPRMPVISNVD 245
+ A+E A+ A+ VR L VAGAFHT FM PA+ AA A P ++SN D
Sbjct: 168 RLTALEKLAEDPPAKARVRALGVAGAFHTEFMAPALDGFAAAAANIATADPTATLLSNRD 227
Query: 246 AQPHADPEVIKKILAQQVTSPVQWEXXXXXXXXXXXXXSYELGPGKVIAGIVKR 299
+P L Q+T PV+W+ E P ++GI KR
Sbjct: 228 GKPVTSAAAAMDTLVSQLTQPVRWDLCTATLREHTVTAIVEFPPAGTLSGIAKR 281
>pdb|2QJ3|A Chain A, Mycobacterium Tuberculosis Fabd
pdb|2QJ3|B Chain B, Mycobacterium Tuberculosis Fabd
Length = 322
Score = 87.4 bits (215), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 87/294 (29%), Positives = 128/294 (43%), Gaps = 31/294 (10%)
Query: 15 QGAQAVGMGKEAQSVPAAAE---LYKKANDILGFDLLEICTNGPKEKLDSTIISQPAIYV 71
QG+Q GM +P AA+ + KA D+ DL + T E++ T ++QP I
Sbjct: 29 QGSQTEGMLSPWLQLPGAADQIAAWSKAADL---DLARLGTTASTEEITDTAVAQPLIVA 85
Query: 72 TSLAAVELLRARD--GGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGAAM 129
+L A + L R G+ +I G S+GE A A AG + +D + L RGA M
Sbjct: 86 ATLLAHQELARRCVLAGKDVI-----VAGHSVGEIAAYAIAGVIAADDAVALAATRGAEM 140
Query: 130 QEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVKG-- 187
+A M +++G D +V +++D L P N +G +
Sbjct: 141 AKACATEPTGMSAVLGGDETEVLSRL----EQLD----------LVPANRNAAGQIVAAG 186
Query: 188 -IEAVEAKAKSFKARMTVR-LAVAGAFHTGFMEPAVSRLEAALAATQINTPRMPVISNVD 245
+ A+E A+ A+ VR L VAGAFHT FM PA+ AA A P ++SN D
Sbjct: 187 RLTALEKLAEDPPAKARVRALGVAGAFHTEFMAPALDGFAAAAANIATADPTATLLSNRD 246
Query: 246 AQPHADPEVIKKILAQQVTSPVQWEXXXXXXXXXXXXXSYELGPGKVIAGIVKR 299
+P L Q+T PV+W+ E P ++GI KR
Sbjct: 247 GKPVTSAAAAMDTLVSQLTQPVRWDLCTATLREHTVTAIVEFPPAGTLSGIAKR 300
>pdb|4AMM|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The
Iterative Polyketide Synthase In Enediyne Biosynthesis
Reveals The Molecular Basis Of Substrate Specificity
Length = 401
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 114/250 (45%), Gaps = 22/250 (8%)
Query: 55 PKEKLDSTIISQPAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFS 114
P E +D T ++QPAI SLA + L R G + + G SLGE AL++AGA
Sbjct: 138 PAEPVD-TAVAQPAIIADSLAGIRWLD-RLGARPV-----GALGHSLGELAALSWAGALD 190
Query: 115 FEDGLKLVKLRGAAMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYL 174
+D L L + RG AM A +A G M+S+ D ++L V DN +
Sbjct: 191 ADDTLALARARGEAMSAATEAPSG-MLSLRA-DLAAARELAAGTGAVVAVDNGER----- 243
Query: 175 CPGNYAVSGGVKGIEAVEAKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQIN 234
+ V+G ++ V A+ T LAV+ AFH+ M PA L A
Sbjct: 244 ---HVVVAGTRPELDRVAEAARHAGIEATP-LAVSHAFHSPLMAPAAEALRRAAGRLPWR 299
Query: 235 TPRMPVISNVDAQPHADPEVIKKILAQQVTSPVQWEXXXXXXXXXXXXXSYELGPGKVIA 294
P PV S V AD + + ++L +Q+T PV++ E+GPG++++
Sbjct: 300 RPERPVASTVTGAWWADEDPV-EVLVRQLTGPVRFR---EALGLLDADLLVEVGPGRMLS 355
Query: 295 GIVKRLDKSA 304
+ + ++A
Sbjct: 356 ALAEAAGRTA 365
>pdb|4AMN|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The
Iterative Polyketide Synthase In Enediyne Biosynthesis
Reveals The Molecular Basis Of Substrate Specificity
pdb|4AMP|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The
Iterative Polyketide Synthase In Enediyne Biosynthesis
Reveals The Molecular Basis Of Substrate Specificity
Length = 421
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 114/250 (45%), Gaps = 22/250 (8%)
Query: 55 PKEKLDSTIISQPAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFS 114
P E +D T ++QPAI SLA + L R G + + G SLGE AL++AGA
Sbjct: 141 PAEPVD-TAVAQPAIIADSLAGIRWLD-RLGARPV-----GALGHSLGELAALSWAGALD 193
Query: 115 FEDGLKLVKLRGAAMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYL 174
+D L L + RG AM A +A G M+S+ D ++L V DN +
Sbjct: 194 ADDTLALARARGEAMSAATEAPSG-MLSLRA-DLAAARELAAGTGAVVAVDNGER----- 246
Query: 175 CPGNYAVSGGVKGIEAVEAKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQIN 234
+ V+G ++ V A+ T LAV+ AFH+ M PA L A
Sbjct: 247 ---HVVVAGTRPELDRVAEAARHAGIEATP-LAVSHAFHSPLMAPAAEALRRAAGRLPWR 302
Query: 235 TPRMPVISNVDAQPHADPEVIKKILAQQVTSPVQWEXXXXXXXXXXXXXSYELGPGKVIA 294
P PV S V AD + + ++L +Q+T PV++ E+GPG++++
Sbjct: 303 RPERPVASTVTGAWWADEDPV-EVLVRQLTGPVRFR---EALGLLDADLLVEVGPGRMLS 358
Query: 295 GIVKRLDKSA 304
+ + ++A
Sbjct: 359 ALAEAAGRTA 368
>pdb|4AMO|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The
Iterative Polyketide Synthase In Enediyne Biosynthesis
Reveals The Molecular Basis Of Substrate Specificity
Length = 421
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 114/250 (45%), Gaps = 22/250 (8%)
Query: 55 PKEKLDSTIISQPAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFS 114
P E +D T ++QPAI SLA + L R G + + G SLGE AL++AGA
Sbjct: 141 PAEPVD-TAVAQPAIIADSLAGIRWLD-RLGARPV-----GALGHSLGELAALSWAGALD 193
Query: 115 FEDGLKLVKLRGAAMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYL 174
+D L L + RG AM A +A G M+S+ D ++L V DN +
Sbjct: 194 ADDTLALARARGEAMSVATEAPSG-MLSLRA-DLAAARELAAGTGAVVAVDNGER----- 246
Query: 175 CPGNYAVSGGVKGIEAVEAKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQIN 234
+ V+G ++ V A+ T LAV+ AFH+ M PA L A
Sbjct: 247 ---HVVVAGTRPELDRVAEAARHAGIEATP-LAVSHAFHSPLMAPAAEALRRAAGRLPWR 302
Query: 235 TPRMPVISNVDAQPHADPEVIKKILAQQVTSPVQWEXXXXXXXXXXXXXSYELGPGKVIA 294
P PV S V AD + + ++L +Q+T PV++ E+GPG++++
Sbjct: 303 RPERPVASTVTGAWWADEDPV-EVLVRQLTGPVRFR---EALGLLDADLLVEVGPGRMLS 358
Query: 295 GIVKRLDKSA 304
+ + ++A
Sbjct: 359 ALAEAAGRTA 368
>pdb|3TZW|A Chain A, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Orthorhombic Apoform At 2.6 A
pdb|3TZX|A Chain A, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In Tetragonal Apo Form At 2.3 A
pdb|3TZX|B Chain B, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In Tetragonal Apo Form At 2.3 A
pdb|3TZY|A Chain A, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Palmitoylated Form At 2.2 A
pdb|3TZY|B Chain B, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Palmitoylated Form At 2.2 A
pdb|3TZZ|A Chain A, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Carboxypalmitoylated Form At 2.5 A
pdb|3TZZ|B Chain B, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Carboxypalmitoylated Form At 2.5 A
Length = 491
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 95/232 (40%), Gaps = 21/232 (9%)
Query: 40 NDILGFDLLEICTNGPKEKLDSTIISQPAIYVTSLAAVELLRARDGGQQIIDSVDVTCGL 99
D LG+ +LE+ + ++ T +Q I+ +A ELLR + G
Sbjct: 178 QDELGYSVLELILDDAQDYGIET--TQVTIFAIQIALGELLRHHGAKPAAV------IGQ 229
Query: 100 SLGEYTALAFAGAFSFEDGLKLVKLRGAAMQEAADAAKGAMVSIIGLDSDKVQQLCDAAN 159
SLGE + FAG S D + + R M E G + ++ L V+ D
Sbjct: 230 SLGEAASAYFAGGLSLRDATRAICSRSHLMGEGEAMLFGEYIRLMAL----VEYSADEIR 285
Query: 160 QEVDEDNKVQIANYLCPGNYAVSGGVKGIEAVEAKAKSFKARMTVRLAVAGAFHTGFMEP 219
+ + +++ Y P + G + ++A+ A+A++ + + + A GA HT M+P
Sbjct: 286 EVFSDFPDLEVCVYAAPTQTVIGGPPEQVDAILARAEA-EGKFARKFATKGASHTSQMDP 344
Query: 220 AVSRLEAALAATQINTPRMPVISNVD--------AQPHADPEVIKKILAQQV 263
+ L A L + +P + S V +P D E KK L V
Sbjct: 345 LLGELTAELQGIKPTSPTCGIFSTVHEGRYIKPGGEPIHDVEYWKKGLRHSV 396
>pdb|3ZEN|D Chain D, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|E Chain E, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|F Chain F, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|A Chain A, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|B Chain B, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|C Chain C, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
Length = 3089
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 98/205 (47%), Gaps = 31/205 (15%)
Query: 15 QGAQAVGMGKEAQSVPAAA-ELYKKAN----DILGFDLLEICTNGPKEKLDSTI-ISQP- 67
QG Q GMG E ++ AA +++ A+ + LGF +L + + P + S + P
Sbjct: 1355 QGIQHKGMGMEVRARSKAARKVWDSADKFTRETLGFSVLHVVRDNPTSLIASGVHYHHPD 1414
Query: 68 -AIYVT--------SLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALA-FAGAFSFED 117
+++T ++AA ++ R+ G + ++ CG S+GEYTALA +G + E
Sbjct: 1415 GVLFLTQFTQVAMATVAAAQVAEMREQGAFVEGAI--ACGHSVGEYTALACVSGVYELEA 1472
Query: 118 GLKLVKLRGAAMQEAADAAK---------GAMVSIIGLDSDKVQQLCDAANQEVDEDNKV 168
L++V RG+ M + + S I LD V+ ++ E +
Sbjct: 1473 LLEVVFHRGSKMHDIVPRDELGRSNYRLAAIRPSQIDLDDADVKDFVAEISERTGE--FL 1530
Query: 169 QIANYLCPGN-YAVSGGVKGIEAVE 192
+I N+ G+ YA++G V G+EA+E
Sbjct: 1531 EIVNFNLRGSQYAIAGTVAGLEALE 1555
>pdb|2UVA|G Chain G, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described
In Remark 400
pdb|2UVA|H Chain H, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described
In Remark 400
pdb|2UVA|I Chain I, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described
In Remark 400
pdb|2UVA|J Chain J, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described
In Remark 400
pdb|2UVA|K Chain K, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described
In Remark 400
pdb|2UVA|L Chain L, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described
In Remark 400
pdb|2UVC|G Chain G, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase
And Is Described In Remark 400
pdb|2UVC|H Chain H, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase
And Is Described In Remark 400
pdb|2UVC|I Chain I, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase
And Is Described In Remark 400
pdb|2UVC|J Chain J, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase
And Is Described In Remark 400
pdb|2UVC|K Chain K, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase
And Is Described In Remark 400
pdb|2UVC|L Chain L, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase
And Is Described In Remark 400
Length = 2060
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 71/172 (41%), Gaps = 25/172 (14%)
Query: 124 LRGAAMQEAADAAKGA---MVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYA 180
L + +Q++ + +G M+SI L VQ+ DA NQ + ED + I+ N+
Sbjct: 313 LAPSTLQDSVENGEGTPTPMLSIRDLTRSAVQEHIDATNQHLPEDRHIGISLVNSARNFV 372
Query: 181 VSG-------------GVKGIEAVEAKAKSF---KARMTVR-LAVAGAFHTGFMEPAVSR 223
V+G VK ++ F KAR R L + FH+ ++ A +
Sbjct: 373 VTGPPISLYGLNLRLRKVKAPTGLDQNRIPFTQRKARFVNRFLPITAPFHSPYLAGAHAH 432
Query: 224 L-----EAALAATQINTPRMPVISNVDAQPHADPEVIKKILAQQVTSPVQWE 270
+ + + A+ + P + D + D ++I +++ PV WE
Sbjct: 433 ILGDVDDMKIPASSLVIPVYDTKTGQDLRELGDEDIIPELVRMITYDPVNWE 484
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 6/53 (11%)
Query: 11 YVLS-QGAQAVGMGKEAQSV-PAAAELYKKAN----DILGFDLLEICTNGPKE 57
YV + QG+Q GMG + + P A E++ +A+ + GF +++I N PKE
Sbjct: 1674 YVFTGQGSQEQGMGMDLYATSPVAKEVWDRADKHFRENYGFSIIDIVKNNPKE 1726
>pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
pdb|2QO3|B Chain B, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
Length = 915
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 59/144 (40%), Gaps = 18/144 (12%)
Query: 8 LLFYVLSQGAQAVGMGKE--------AQSVPAAAELYKKANDILGFDLLEICTNGPKEKL 59
++F QG+Q GMG E A + A E D D+L P L
Sbjct: 534 VVFLFPGQGSQWAGMGAELLSSSPVFAGKIRACDESMAPMQDWKVSDVLRQAPGAPG--L 591
Query: 60 DSTIISQPAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGL 119
D + QP ++ ++ EL R+ ++ V G S GE A AGA + ED
Sbjct: 592 DRVDVVQPVLFAVMVSLAELWRSYG-----VEPAAV-VGHSQGEIAAAHVAGALTLEDAA 645
Query: 120 KLVKLRGAAMQEAADAAKGAMVSI 143
KLV R M+ + +G M ++
Sbjct: 646 KLVVGRSRLMRSL--SGEGGMAAV 667
>pdb|2PFF|B Chain B, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|E Chain E, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|H Chain H, Structural Insights Of Yeast Fatty Acid Synthase
Length = 2006
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 68/177 (38%), Gaps = 63/177 (35%)
Query: 15 QGAQAVGMGKE-AQSVPAAAELYKKAN----DILGFDLLEICTNGP-------------- 55
QG+Q GMG + ++ AA +++ +A+ D GF +L+I N P
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKR 1683
Query: 56 ---------------------------------------KEKLDSTIISQPAIYVTSLAA 76
K L +T +QPA+ + AA
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAA 1743
Query: 77 VELLRARDGGQQIIDSVDVTCGLSLGEYTALA-FAGAFSFEDGLKLVKLRGAAMQEA 132
E L+++ +I + G SLGEY ALA A S E +++V RG MQ A
Sbjct: 1744 FEDLKSKG----LIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVA 1796
>pdb|2VKZ|G Chain G, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|H Chain H, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|I Chain I, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|G Chain G, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|H Chain H, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|I Chain I, Saccharomyces Cerevisiae Fas Type I
pdb|2UV8|G Chain G, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|H Chain H, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|I Chain I, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 2051
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 70/182 (38%), Gaps = 63/182 (34%)
Query: 10 FYVLSQGAQAVGMGKE-AQSVPAAAELYKKAN----DILGFDLLEICTNGP--------- 55
F QG+Q GMG + ++ AA +++ +A+ D GF +L+I N P
Sbjct: 1664 FVFTGQGSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGG 1723
Query: 56 ------------------------KEKL--------------------DSTIISQPAIYV 71
EK+ +T +QPA+ +
Sbjct: 1724 EKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTL 1783
Query: 72 TSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALA-FAGAFSFEDGLKLVKLRGAAMQ 130
AA E L+++ +I + G SLGEY ALA A S E +++V RG MQ
Sbjct: 1784 MEKAAFEDLKSKG----LIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQ 1839
Query: 131 EA 132
A
Sbjct: 1840 VA 1841
>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|B Chain B, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|C Chain C, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|D Chain D, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|E Chain E, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|F Chain F, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs
Length = 917
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 82/192 (42%), Gaps = 20/192 (10%)
Query: 59 LDSTIISQPAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDG 118
LD + QPA++ ++ L R+ ++ V G S GE A AGA + ED
Sbjct: 607 LDRVDVVQPALFAVXVSLAALWRSHG-----VEPAAV-VGHSQGEIAAAHVAGALTLEDA 660
Query: 119 LKLVKLRGAAMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGN 178
KLV +R ++ +G S GL +++ AA + + IA+ P +
Sbjct: 661 AKLVAVRSRVLRRL--GGQGGXAS-FGLGTEQ------AAERIGRFAGALSIASVNGPRS 711
Query: 179 YAVSGGVKGIEAV--EAKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQINTP 236
V+G ++ + E +A++ KAR R+ V A H+ +E L LA +
Sbjct: 712 VVVAGESGPLDELIAECEAEAHKAR---RIPVDYASHSPQVESLREELLTELAGISPVSA 768
Query: 237 RMPVISNVDAQP 248
+ + S QP
Sbjct: 769 DVALYSTTTGQP 780
>pdb|3BBN|C Chain C, Homology Model For The Spinach Chloroplast 30s Subunit
Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
Length = 218
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 51/116 (43%), Gaps = 19/116 (16%)
Query: 162 VDEDNKVQ--IANYLCPGNYAVSGGVKGIEAVEAKAKSFKARMTVRLAVAGAFHTGFMEP 219
+ ED K++ I NY+ N S GV+GI +E + + ++ + H GF +
Sbjct: 33 LQEDQKIRDCIKNYV-QKNTKTSSGVEGIARIEIQKRIDLIQVII--------HMGFPKL 83
Query: 220 AVSRLEAALAATQIN--------TPRMPVISNVDAQPHADPEVIKKILAQQVTSPV 267
+ + +IN ++ + A+P+ DP ++ + +A Q+ S V
Sbjct: 84 LIENRPQGVEDLKINVQKELNCVNRKLNIAITRIAKPYGDPNILAEFIAGQLKSRV 139
>pdb|2BRI|A Chain A, Ump Kinase From Pyrococcus Furiosus Complexed With Its
Substrate Analog Amppnp
pdb|2BRI|B Chain B, Ump Kinase From Pyrococcus Furiosus Complexed With Its
Substrate Analog Amppnp
Length = 225
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 191 VEAKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQINTPRMPVISNVDAQPHA 250
VE +++KA ++ V G H G AV AAL A + + VI+NVD A
Sbjct: 93 VEDFWEAWKAVQLKKIPVXGGTHPGHTTDAV----AALLAEFLKADLLVVITNVDGVYTA 148
Query: 251 DPE 253
DP+
Sbjct: 149 DPK 151
>pdb|2BMU|A Chain A, Ump Kinase From Pyrococcus Furiosus Complexed With Its
Substrate Ump And Its Substrate Analog Amppnp
pdb|2BMU|B Chain B, Ump Kinase From Pyrococcus Furiosus Complexed With Its
Substrate Ump And Its Substrate Analog Amppnp
Length = 226
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 191 VEAKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQINTPRMPVISNVDAQPHA 250
VE +++KA ++ V G H G AV AAL A + + VI+NVD A
Sbjct: 94 VEDFWEAWKAVQLKKIPVXGGTHPGHTTDAV----AALLAEFLKADLLVVITNVDGVYTA 149
Query: 251 DPE 253
DP+
Sbjct: 150 DPK 152
>pdb|2BRX|A Chain A, Ump Kinase From Pyrococcus Furiosus Without Ligands
pdb|2BRX|B Chain B, Ump Kinase From Pyrococcus Furiosus Without Ligands
Length = 244
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 191 VEAKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQINTPRMPVISNVDAQPHA 250
VE +++KA ++ V G H G AV AAL A + + VI+NVD A
Sbjct: 112 VEDFWEAWKAVQLKKIPVMGGTHPGHTTDAV----AALLAEFLKADLLVVITNVDGVYTA 167
Query: 251 DPE 253
DP+
Sbjct: 168 DPK 170
>pdb|2JI5|A Chain A, Structure Of Ump Kinase From Pyrococcus Furiosus Complexed
With Utp
pdb|2JI5|B Chain B, Structure Of Ump Kinase From Pyrococcus Furiosus Complexed
With Utp
Length = 227
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 191 VEAKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAALAATQINTPRMPVISNVDAQPHA 250
VE +++KA ++ V G H G AV AAL A + + VI+NVD A
Sbjct: 95 VEDFWEAWKAVQLKKIPVMGGTHPGHTTDAV----AALLAEFLKADLLVVITNVDGVYTA 150
Query: 251 DPE 253
DP+
Sbjct: 151 DPK 153
>pdb|2Z1N|A Chain A, Crystal Structure Of Ape0912 From Aeropyrum Pernix K1
pdb|2Z1N|B Chain B, Crystal Structure Of Ape0912 From Aeropyrum Pernix K1
Length = 260
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 11/71 (15%)
Query: 34 ELYKKANDILGFDLLEICTNGPK---------EKLDST--IISQPAIYVTSLAAVELLRA 82
L++KA D+ G D+L T GP+ E D + ++++ A++V AA +++
Sbjct: 75 RLFEKARDLGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEK 134
Query: 83 RDGGQQIIDSV 93
G I SV
Sbjct: 135 GWGRMVYIGSV 145
>pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
pdb|1MVX|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
Length = 299
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 175 CPGNYAVSGGVKGIEAVEAKAKSFKARMTVRLAVAGAFHTGFMEPAVSRLEAA 227
CP G +E + K K + R ++R A AG F T ++ ++ EAA
Sbjct: 126 CPNRVVQRGRTLPLEIFKTKEKGWGVR-SLRFAPAGTFITCYLGEVITSAEAA 177
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,775,005
Number of Sequences: 62578
Number of extensions: 282081
Number of successful extensions: 829
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 714
Number of HSP's gapped (non-prelim): 45
length of query: 311
length of database: 14,973,337
effective HSP length: 99
effective length of query: 212
effective length of database: 8,778,115
effective search space: 1860960380
effective search space used: 1860960380
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)