Query 021569
Match_columns 311
No_of_seqs 253 out of 1336
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 04:01:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021569.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021569hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 1.5E-59 3.2E-64 434.4 25.2 252 36-310 1-264 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 5.8E-59 1.3E-63 424.1 22.9 261 30-310 6-280 (336)
3 COG0656 ARA1 Aldo/keto reducta 100.0 1.1E-56 2.5E-61 401.9 19.7 216 36-310 3-221 (280)
4 PRK09912 L-glyceraldehyde 3-ph 100.0 1.4E-54 3E-59 407.2 26.2 259 34-310 11-287 (346)
5 TIGR01293 Kv_beta voltage-depe 100.0 1.2E-54 2.6E-59 403.2 25.4 255 38-310 1-271 (317)
6 PRK10625 tas putative aldo-ket 100.0 6.8E-54 1.5E-58 402.7 25.4 255 36-310 1-294 (346)
7 PLN02587 L-galactose dehydroge 100.0 5E-52 1.1E-56 385.3 23.0 245 38-310 1-251 (314)
8 KOG1577 Aldo/keto reductase fa 100.0 3.2E-52 6.9E-57 373.4 17.4 218 38-310 6-242 (300)
9 cd06660 Aldo_ket_red Aldo-keto 100.0 6E-48 1.3E-52 352.7 24.0 237 38-310 1-242 (285)
10 PRK11172 dkgB 2,5-diketo-D-glu 100.0 7.4E-48 1.6E-52 349.5 21.1 204 47-310 2-209 (267)
11 PRK14863 bifunctional regulato 100.0 1E-47 2.2E-52 352.5 20.1 233 45-310 2-237 (292)
12 COG4989 Predicted oxidoreducta 100.0 2.3E-48 4.9E-53 335.4 14.6 236 36-310 1-248 (298)
13 PRK10376 putative oxidoreducta 100.0 4.4E-47 9.6E-52 348.3 22.0 221 39-310 10-243 (290)
14 PF00248 Aldo_ket_red: Aldo/ke 100.0 4.2E-47 9E-52 346.8 20.1 233 50-310 1-238 (283)
15 PRK11565 dkgA 2,5-diketo-D-glu 100.0 5.9E-46 1.3E-50 338.3 21.1 212 38-310 6-219 (275)
16 KOG1576 Predicted oxidoreducta 100.0 5.6E-40 1.2E-44 285.4 16.9 242 35-309 21-275 (342)
17 COG1453 Predicted oxidoreducta 100.0 3.6E-37 7.8E-42 279.5 17.4 228 36-310 1-237 (391)
18 KOG3023 Glutamate-cysteine lig 98.2 2.2E-06 4.8E-11 74.6 6.2 72 177-253 156-227 (285)
19 PRK08392 hypothetical protein; 92.3 7.1 0.00015 34.0 14.7 154 77-250 16-178 (215)
20 PRK13796 GTPase YqeH; Provisio 90.3 5.8 0.00013 37.7 12.6 144 49-209 34-180 (365)
21 cd03319 L-Ala-DL-Glu_epimerase 89.3 8.6 0.00019 35.5 12.7 156 74-258 135-291 (316)
22 PRK08609 hypothetical protein; 87.3 26 0.00057 35.4 15.4 156 77-250 351-522 (570)
23 cd01965 Nitrogenase_MoFe_beta_ 87.0 6.7 0.00015 38.0 10.8 105 110-221 66-187 (428)
24 PRK09856 fructoselysine 3-epim 86.9 8.2 0.00018 34.6 10.7 52 237-304 94-145 (275)
25 cd03315 MLE_like Muconate lact 86.8 17 0.00037 32.6 12.7 157 74-258 86-243 (265)
26 COG1748 LYS9 Saccharopine dehy 85.4 6.5 0.00014 37.7 9.4 78 77-173 81-158 (389)
27 PRK04452 acetyl-CoA decarbonyl 84.9 15 0.00032 34.3 11.3 96 153-256 83-185 (319)
28 TIGR01278 DPOR_BchB light-inde 84.7 23 0.0005 35.3 13.4 105 110-221 70-193 (511)
29 PF07021 MetW: Methionine bios 84.6 5.9 0.00013 34.1 7.9 153 79-259 5-172 (193)
30 cd03316 MR_like Mandelate race 84.3 30 0.00065 32.4 13.5 159 74-254 140-299 (357)
31 TIGR00542 hxl6Piso_put hexulos 84.1 9.2 0.0002 34.5 9.7 52 237-304 98-149 (279)
32 PF01261 AP_endonuc_2: Xylose 83.8 6 0.00013 33.4 7.9 88 203-304 27-128 (213)
33 cd01973 Nitrogenase_VFe_beta_l 81.9 44 0.00094 32.8 13.9 110 110-220 71-192 (454)
34 PRK07535 methyltetrahydrofolat 81.8 40 0.00086 30.5 12.7 137 143-309 23-159 (261)
35 PRK00164 moaA molybdenum cofac 81.2 46 0.001 30.8 14.8 159 71-250 48-227 (331)
36 cd04728 ThiG Thiazole synthase 81.1 41 0.00088 30.2 15.3 105 140-251 71-180 (248)
37 TIGR00190 thiC thiamine biosyn 80.9 27 0.00058 33.5 11.4 93 141-262 136-228 (423)
38 PRK13209 L-xylulose 5-phosphat 80.5 26 0.00055 31.6 11.1 89 200-304 54-154 (283)
39 PRK13352 thiamine biosynthesis 79.8 23 0.00051 34.0 10.6 93 141-262 139-231 (431)
40 CHL00076 chlB photochlorophyll 79.5 47 0.001 33.1 13.4 104 110-220 70-197 (513)
41 cd01974 Nitrogenase_MoFe_beta 79.1 27 0.00058 34.0 11.4 108 110-220 70-191 (435)
42 PRK07945 hypothetical protein; 78.8 58 0.0013 30.5 15.7 161 76-250 112-288 (335)
43 cd00423 Pterin_binding Pterin 78.8 49 0.0011 29.7 13.1 144 142-309 21-171 (258)
44 PRK00208 thiG thiazole synthas 78.4 50 0.0011 29.6 13.7 106 140-252 71-181 (250)
45 PRK02910 light-independent pro 78.2 45 0.00098 33.3 12.9 104 110-221 70-193 (519)
46 PRK13210 putative L-xylulose 5 78.2 32 0.00069 30.8 11.0 52 237-304 98-149 (284)
47 PRK13361 molybdenum cofactor b 77.7 61 0.0013 30.2 14.9 139 71-230 44-195 (329)
48 KOG0023 Alcohol dehydrogenase, 77.3 5.7 0.00012 37.0 5.6 154 31-249 169-324 (360)
49 TIGR01862 N2-ase-Ialpha nitrog 75.9 44 0.00096 32.6 11.9 104 110-220 102-221 (443)
50 TIGR01928 menC_lowGC/arch o-su 75.9 67 0.0015 29.8 13.4 153 75-259 134-287 (324)
51 TIGR03597 GTPase_YqeH ribosome 75.6 47 0.001 31.4 11.7 144 49-209 28-174 (360)
52 cd01981 Pchlide_reductase_B Pc 75.4 78 0.0017 30.6 13.5 103 111-221 71-197 (430)
53 cd01968 Nitrogenase_NifE_I Nit 74.6 74 0.0016 30.6 13.0 113 93-221 63-189 (410)
54 PF00148 Oxidored_nitro: Nitro 74.5 21 0.00046 33.9 9.2 103 110-218 59-173 (398)
55 cd00739 DHPS DHPS subgroup of 74.2 67 0.0014 28.9 13.6 144 142-309 21-171 (257)
56 PRK07329 hypothetical protein; 74.2 64 0.0014 28.7 12.8 103 149-252 83-214 (246)
57 PRK15408 autoinducer 2-binding 74.1 43 0.00094 31.2 11.0 89 126-222 23-111 (336)
58 PRK07328 histidinol-phosphatas 73.8 46 0.00099 30.0 10.7 166 77-250 20-225 (269)
59 TIGR02932 vnfK_nitrog V-contai 73.3 97 0.0021 30.4 13.6 115 94-221 67-197 (457)
60 cd00740 MeTr MeTr subgroup of 72.5 73 0.0016 28.6 12.6 104 142-254 23-127 (252)
61 COG2102 Predicted ATPases of P 71.7 53 0.0011 28.9 10.0 102 176-305 75-177 (223)
62 PF00682 HMGL-like: HMGL-like 71.1 71 0.0015 27.9 12.6 126 73-217 12-151 (237)
63 PRK09613 thiH thiamine biosynt 70.8 71 0.0015 31.5 11.8 141 142-308 115-273 (469)
64 cd03174 DRE_TIM_metallolyase D 70.7 18 0.0004 32.1 7.4 105 142-253 16-135 (265)
65 PRK13958 N-(5'-phosphoribosyl) 69.4 16 0.00035 31.7 6.5 65 155-226 17-83 (207)
66 cd01967 Nitrogenase_MoFe_alpha 67.7 1.2E+02 0.0025 29.0 13.1 104 110-220 72-190 (406)
67 PRK09856 fructoselysine 3-epim 67.7 29 0.00064 31.0 8.1 96 195-304 3-106 (275)
68 PF05690 ThiG: Thiazole biosyn 67.3 24 0.00051 31.4 6.9 168 49-253 9-182 (247)
69 PRK05588 histidinol-phosphatas 67.0 93 0.002 27.6 16.9 163 76-251 17-214 (255)
70 PRK14461 ribosomal RNA large s 66.9 69 0.0015 30.6 10.5 92 166-257 232-352 (371)
71 COG3623 SgaU Putative L-xylulo 66.3 17 0.00036 32.4 5.7 80 43-136 65-156 (287)
72 TIGR00381 cdhD CO dehydrogenas 65.7 1.1E+02 0.0023 29.4 11.4 95 156-260 150-254 (389)
73 COG0635 HemN Coproporphyrinoge 65.6 57 0.0012 31.6 10.0 60 141-202 200-276 (416)
74 TIGR02666 moaA molybdenum cofa 65.6 1.1E+02 0.0025 28.2 14.2 137 72-229 43-193 (334)
75 PRK00912 ribonuclease P protei 65.0 98 0.0021 27.2 12.6 145 75-251 16-172 (237)
76 COG0422 ThiC Thiamine biosynth 64.0 1.4E+02 0.003 28.6 12.2 143 75-262 78-229 (432)
77 PRK09997 hydroxypyruvate isome 64.0 91 0.002 27.6 10.5 52 237-304 89-140 (258)
78 cd01976 Nitrogenase_MoFe_alpha 63.9 1.4E+02 0.0031 28.8 13.5 104 110-220 83-202 (421)
79 TIGR03679 arCOG00187 arCOG0018 63.3 1E+02 0.0022 26.9 11.7 131 149-305 46-177 (218)
80 PRK06740 histidinol-phosphatas 63.1 1.3E+02 0.0029 28.1 12.2 100 149-250 156-288 (331)
81 cd03325 D-galactonate_dehydrat 62.4 1.4E+02 0.003 28.0 13.1 158 75-253 125-285 (352)
82 COG0135 TrpF Phosphoribosylant 62.4 43 0.00093 29.2 7.6 80 156-250 19-102 (208)
83 cd03321 mandelate_racemase Man 61.7 1.1E+02 0.0025 28.6 11.1 152 75-253 143-295 (355)
84 cd01966 Nitrogenase_NifN_1 Nit 61.7 58 0.0013 31.5 9.3 109 110-221 66-189 (417)
85 cd01977 Nitrogenase_VFe_alpha 61.6 1.4E+02 0.003 28.8 11.9 113 93-220 64-192 (415)
86 PLN02363 phosphoribosylanthran 61.4 29 0.00064 31.3 6.7 74 142-226 55-130 (256)
87 PRK09875 putative hydrolase; P 61.3 1.3E+02 0.0029 27.6 14.0 54 188-247 119-177 (292)
88 TIGR02370 pyl_corrinoid methyl 60.9 47 0.001 28.5 7.7 148 73-247 10-164 (197)
89 PF00682 HMGL-like: HMGL-like 60.9 45 0.00096 29.2 7.8 102 142-249 11-124 (237)
90 COG1149 MinD superfamily P-loo 60.7 22 0.00048 32.3 5.7 93 154-257 155-250 (284)
91 COG1751 Uncharacterized conser 60.7 50 0.0011 27.4 7.1 90 166-258 2-95 (186)
92 PRK14017 galactonate dehydrata 60.2 1.6E+02 0.0034 28.0 12.2 157 74-254 125-287 (382)
93 TIGR01496 DHPS dihydropteroate 60.1 1.3E+02 0.0028 27.0 14.2 98 142-252 20-124 (257)
94 TIGR00048 radical SAM enzyme, 59.2 1E+02 0.0022 29.2 10.2 90 166-257 219-333 (355)
95 PRK09058 coproporphyrinogen II 58.8 1.2E+02 0.0026 29.6 11.0 110 141-262 226-335 (449)
96 COG0279 GmhA Phosphoheptose is 58.8 94 0.002 26.2 8.6 122 75-209 28-154 (176)
97 TIGR01283 nifE nitrogenase mol 57.8 1.9E+02 0.0042 28.2 12.3 102 110-220 106-227 (456)
98 PRK14463 ribosomal RNA large s 57.3 1.4E+02 0.003 28.2 10.8 90 166-257 211-325 (349)
99 TIGR01284 alt_nitrog_alph nitr 57.2 2E+02 0.0043 28.2 12.3 105 110-220 109-229 (457)
100 COG1140 NarY Nitrate reductase 57.0 3.4 7.4E-05 39.0 -0.1 55 189-248 263-317 (513)
101 PF13407 Peripla_BP_4: Peripla 56.9 33 0.00071 29.9 6.2 74 144-222 13-86 (257)
102 TIGR03822 AblA_like_2 lysine-2 56.6 1.7E+02 0.0036 27.2 15.7 135 73-220 120-262 (321)
103 TIGR01860 VNFD nitrogenase van 56.6 1.7E+02 0.0037 28.7 11.7 105 110-220 111-231 (461)
104 TIGR01428 HAD_type_II 2-haloal 56.0 33 0.00071 28.9 5.9 63 148-211 62-128 (198)
105 cd03318 MLE Muconate Lactonizi 55.9 1.8E+02 0.0039 27.3 12.8 85 164-256 215-300 (365)
106 PRK14459 ribosomal RNA large s 55.8 1.6E+02 0.0034 28.2 10.9 93 165-257 241-359 (373)
107 cd07944 DRE_TIM_HOA_like 4-hyd 55.5 64 0.0014 29.1 8.0 103 140-251 15-127 (266)
108 CHL00162 thiG thiamin biosynth 55.5 96 0.0021 28.0 8.7 106 140-252 79-195 (267)
109 PLN02681 proline dehydrogenase 55.3 2.2E+02 0.0047 28.1 14.8 171 75-257 220-413 (455)
110 PRK01222 N-(5'-phosphoribosyl) 55.0 38 0.00082 29.5 6.2 64 156-226 20-85 (210)
111 PRK14462 ribosomal RNA large s 54.9 1.7E+02 0.0037 27.8 10.9 88 168-257 226-338 (356)
112 KOG1549 Cysteine desulfurase N 54.4 1.1E+02 0.0023 29.8 9.4 13 238-250 203-215 (428)
113 COG3215 PilZ Tfp pilus assembl 54.2 39 0.00085 25.9 5.2 70 75-156 20-105 (117)
114 PRK14476 nitrogenase molybdenu 54.1 68 0.0015 31.4 8.4 108 110-219 77-198 (455)
115 cd01321 ADGF Adenosine deamina 53.8 1.6E+02 0.0034 27.8 10.5 15 237-251 237-251 (345)
116 COG2069 CdhD CO dehydrogenase/ 53.8 1.3E+02 0.0028 27.9 9.3 95 154-258 159-263 (403)
117 cd00019 AP2Ec AP endonuclease 53.2 1.7E+02 0.0036 26.2 11.1 51 237-304 89-139 (279)
118 PRK09989 hypothetical protein; 53.1 1.5E+02 0.0033 26.2 10.0 52 237-304 89-140 (258)
119 PRK05414 urocanate hydratase; 53.0 43 0.00094 33.2 6.6 106 110-227 151-268 (556)
120 COG2355 Zn-dependent dipeptida 52.8 81 0.0017 29.4 8.1 31 167-198 98-128 (313)
121 TIGR01228 hutU urocanate hydra 52.8 42 0.00091 33.1 6.4 106 110-227 142-259 (545)
122 TIGR00423 radical SAM domain p 52.6 1.5E+02 0.0033 27.2 10.1 20 237-256 149-168 (309)
123 PLN02444 HMP-P synthase 52.0 1.8E+02 0.004 29.3 10.7 90 142-262 297-386 (642)
124 cd03327 MR_like_2 Mandelate ra 51.8 2E+02 0.0044 26.7 12.3 158 74-253 121-280 (341)
125 TIGR03700 mena_SCO4494 putativ 51.7 2.1E+02 0.0046 26.9 11.2 47 142-190 79-125 (351)
126 PRK09284 thiamine biosynthesis 51.7 1.8E+02 0.0039 29.3 10.5 91 141-262 291-381 (607)
127 cd03323 D-glucarate_dehydratas 51.7 2.3E+02 0.0049 27.2 12.5 82 164-255 239-321 (395)
128 cd00316 Oxidoreductase_nitroge 51.4 2.2E+02 0.0047 26.9 12.3 104 110-220 66-183 (399)
129 TIGR01282 nifD nitrogenase mol 51.3 2E+02 0.0044 28.3 11.2 104 110-220 116-237 (466)
130 PRK05692 hydroxymethylglutaryl 51.0 43 0.00093 30.7 6.1 104 142-251 23-138 (287)
131 cd00308 enolase_like Enolase-s 50.7 58 0.0013 28.4 6.7 88 163-258 120-208 (229)
132 TIGR02931 anfK_nitrog Fe-only 50.7 2.5E+02 0.0055 27.5 13.7 107 110-220 77-199 (461)
133 COG2159 Predicted metal-depend 50.6 1.3E+02 0.0028 27.6 9.2 97 155-255 55-166 (293)
134 COG1082 IolE Sugar phosphate i 50.1 1.8E+02 0.0039 25.6 10.2 109 182-304 20-142 (274)
135 cd00408 DHDPS-like Dihydrodipi 50.1 1.9E+02 0.0042 25.9 13.4 25 71-95 14-38 (281)
136 TIGR00126 deoC deoxyribose-pho 48.8 1.8E+02 0.004 25.3 17.0 136 72-228 15-157 (211)
137 PRK14453 chloramphenicol/florf 48.6 1.9E+02 0.0041 27.4 10.1 97 161-257 203-330 (347)
138 PF01120 Alpha_L_fucos: Alpha- 48.3 73 0.0016 29.9 7.4 59 195-256 86-161 (346)
139 PRK14466 ribosomal RNA large s 47.7 1.8E+02 0.004 27.4 9.8 91 165-257 210-325 (345)
140 cd03324 rTSbeta_L-fuconate_deh 47.5 2.7E+02 0.0059 26.9 12.1 151 75-253 198-352 (415)
141 PRK00730 rnpA ribonuclease P; 47.5 95 0.0021 25.2 6.9 61 126-189 47-110 (138)
142 PRK05985 cytosine deaminase; P 47.2 2.5E+02 0.0055 26.5 12.6 19 75-93 98-116 (391)
143 TIGR03234 OH-pyruv-isom hydrox 46.8 1.8E+02 0.004 25.4 9.5 52 237-304 88-139 (254)
144 PRK14478 nitrogenase molybdenu 46.4 2.1E+02 0.0045 28.2 10.5 104 110-220 104-221 (475)
145 cd03322 rpsA The starvation se 46.2 68 0.0015 30.3 6.9 84 163-254 189-273 (361)
146 cd04742 NPD_FabD 2-Nitropropan 45.9 75 0.0016 30.9 7.1 69 183-253 31-102 (418)
147 cd07943 DRE_TIM_HOA 4-hydroxy- 45.4 1E+02 0.0022 27.6 7.7 102 142-251 19-130 (263)
148 PRK14477 bifunctional nitrogen 45.2 1.3E+02 0.0027 32.5 9.3 105 110-221 556-676 (917)
149 cd07944 DRE_TIM_HOA_like 4-hyd 44.8 95 0.0021 28.0 7.3 66 75-159 195-260 (266)
150 PLN02428 lipoic acid synthase 44.7 1.3E+02 0.0029 28.4 8.4 81 176-257 230-325 (349)
151 cd02070 corrinoid_protein_B12- 44.7 2E+02 0.0043 24.6 9.2 21 73-93 9-29 (201)
152 cd02930 DCR_FMN 2,4-dienoyl-Co 44.5 2.7E+02 0.0059 26.1 11.8 17 78-94 140-156 (353)
153 PF01175 Urocanase: Urocanase; 44.5 77 0.0017 31.5 6.8 91 126-227 156-258 (546)
154 cd00739 DHPS DHPS subgroup of 44.4 2.4E+02 0.0052 25.3 10.0 107 79-201 87-209 (257)
155 PRK14464 ribosomal RNA large s 44.1 1.2E+02 0.0026 28.6 8.0 82 174-257 223-317 (344)
156 PRK08195 4-hyroxy-2-oxovalerat 44.1 1.2E+02 0.0025 28.6 8.0 105 140-252 20-134 (337)
157 cd03317 NAAAR N-acylamino acid 43.8 2.7E+02 0.0059 25.9 13.5 152 75-258 139-291 (354)
158 COG2987 HutU Urocanate hydrata 43.4 62 0.0013 31.6 5.9 107 110-227 151-268 (561)
159 TIGR02026 BchE magnesium-proto 43.3 3E+02 0.0066 27.2 11.2 21 142-162 222-242 (497)
160 PF02638 DUF187: Glycosyl hydr 43.0 1.1E+02 0.0023 28.5 7.4 19 237-255 74-92 (311)
161 PRK12581 oxaloacetate decarbox 42.9 3.1E+02 0.0067 27.1 10.8 120 77-221 220-349 (468)
162 COG0820 Predicted Fe-S-cluster 42.5 2.7E+02 0.0059 26.3 10.0 89 166-257 216-330 (349)
163 COG4943 Predicted signal trans 42.4 1.8E+02 0.0039 28.8 9.0 57 192-263 447-503 (524)
164 TIGR01861 ANFD nitrogenase iro 42.3 3.7E+02 0.0079 26.9 11.8 105 110-220 112-232 (513)
165 PF01402 RHH_1: Ribbon-helix-h 42.2 23 0.0005 21.5 2.0 21 288-308 9-29 (39)
166 COG1167 ARO8 Transcriptional r 42.2 2.9E+02 0.0064 27.0 10.8 121 113-256 141-273 (459)
167 COG2089 SpsE Sialic acid synth 42.0 3E+02 0.0065 25.9 11.9 119 73-211 88-225 (347)
168 TIGR01285 nifN nitrogenase mol 41.8 1.2E+02 0.0027 29.4 8.0 109 110-220 76-198 (432)
169 cd07940 DRE_TIM_IPMS 2-isoprop 41.4 28 0.00062 31.3 3.3 40 73-113 199-238 (268)
170 TIGR03217 4OH_2_O_val_ald 4-hy 41.3 1.5E+02 0.0033 27.8 8.3 105 140-252 19-133 (333)
171 PRK12928 lipoyl synthase; Prov 41.1 2.5E+02 0.0054 25.7 9.5 80 175-257 186-282 (290)
172 COG2873 MET17 O-acetylhomoseri 41.1 96 0.0021 29.7 6.7 137 77-254 66-206 (426)
173 PRK14460 ribosomal RNA large s 40.9 3E+02 0.0065 26.0 10.3 101 154-257 207-332 (354)
174 KOG0259 Tyrosine aminotransfer 40.7 3.5E+02 0.0075 26.2 18.1 164 75-261 81-275 (447)
175 PF01964 ThiC: ThiC family; I 40.7 31 0.00068 33.1 3.5 140 75-259 76-224 (420)
176 PRK01060 endonuclease IV; Prov 40.1 1.8E+02 0.0038 26.0 8.4 53 194-248 3-62 (281)
177 COG4464 CapC Capsular polysacc 39.5 1.2E+02 0.0026 26.8 6.6 31 72-102 17-47 (254)
178 PRK14465 ribosomal RNA large s 39.4 3.1E+02 0.0066 25.9 10.0 90 166-257 216-329 (342)
179 TIGR01502 B_methylAsp_ase meth 39.3 1.2E+02 0.0025 29.5 7.3 84 167-255 267-357 (408)
180 PRK14477 bifunctional nitrogen 39.0 5.1E+02 0.011 28.0 12.7 103 110-219 97-213 (917)
181 PRK08776 cystathionine gamma-s 38.7 2.6E+02 0.0055 26.9 9.6 31 220-250 149-179 (405)
182 PLN02746 hydroxymethylglutaryl 38.6 1.3E+02 0.0029 28.4 7.4 98 147-252 69-181 (347)
183 PRK15063 isocitrate lyase; Pro 38.5 1.7E+02 0.0037 28.5 8.2 142 75-220 161-343 (428)
184 PRK11840 bifunctional sulfur c 38.4 3.4E+02 0.0074 25.4 12.5 71 140-211 145-217 (326)
185 TIGR01496 DHPS dihydropteroate 38.4 2.9E+02 0.0064 24.7 11.7 107 79-201 86-207 (257)
186 PF10668 Phage_terminase: Phag 38.1 19 0.00041 24.8 1.3 16 292-307 24-39 (60)
187 cd00019 AP2Ec AP endonuclease 37.9 2.4E+02 0.0052 25.1 8.9 83 204-304 11-101 (279)
188 PF01619 Pro_dh: Proline dehyd 37.7 54 0.0012 30.4 4.6 167 75-257 92-284 (313)
189 TIGR02534 mucon_cyclo muconate 37.6 3.5E+02 0.0077 25.4 13.7 88 163-258 213-301 (368)
190 PF02796 HTH_7: Helix-turn-hel 37.3 50 0.0011 20.9 3.1 25 283-307 11-38 (45)
191 TIGR03822 AblA_like_2 lysine-2 37.3 3.4E+02 0.0074 25.1 12.5 96 163-259 137-240 (321)
192 TIGR01422 phosphonatase phosph 37.0 1.2E+02 0.0026 26.6 6.7 37 176-213 101-137 (253)
193 PRK13803 bifunctional phosphor 37.0 1.7E+02 0.0038 29.9 8.5 75 143-227 12-88 (610)
194 PF03102 NeuB: NeuB family; I 36.9 3.1E+02 0.0066 24.5 10.3 119 73-211 54-191 (241)
195 PRK13352 thiamine biosynthesis 36.9 54 0.0012 31.6 4.5 99 179-305 123-223 (431)
196 cd01821 Rhamnogalacturan_acety 36.9 2.4E+02 0.0052 23.5 8.3 107 182-304 26-149 (198)
197 PRK14456 ribosomal RNA large s 36.7 2.5E+02 0.0054 26.8 9.0 81 175-257 260-353 (368)
198 PRK13478 phosphonoacetaldehyde 36.6 1.3E+02 0.0027 26.8 6.8 36 176-212 103-138 (267)
199 PRK13753 dihydropteroate synth 36.6 3.4E+02 0.0073 24.9 14.0 100 142-255 22-128 (279)
200 PRK12268 methionyl-tRNA synthe 36.4 1.7E+02 0.0038 29.3 8.4 54 145-200 73-127 (556)
201 cd03329 MR_like_4 Mandelate ra 36.3 3.7E+02 0.0081 25.3 13.8 155 73-253 143-299 (368)
202 PRK12331 oxaloacetate decarbox 36.3 1.5E+02 0.0032 29.1 7.6 23 195-217 88-110 (448)
203 TIGR02082 metH 5-methyltetrahy 36.2 4.8E+02 0.01 29.1 12.0 126 157-309 379-508 (1178)
204 TIGR02668 moaA_archaeal probab 36.1 3.3E+02 0.0072 24.6 15.2 127 72-218 40-179 (302)
205 PRK14457 ribosomal RNA large s 36.0 3.8E+02 0.0082 25.3 11.6 95 161-257 211-330 (345)
206 PRK13210 putative L-xylulose 5 35.6 3.2E+02 0.0068 24.2 9.5 95 155-250 25-150 (284)
207 PRK07360 FO synthase subunit 2 35.1 3.7E+02 0.008 25.5 10.0 22 237-258 205-226 (371)
208 PRK15072 bifunctional D-altron 35.1 1.6E+02 0.0034 28.3 7.5 84 163-254 232-316 (404)
209 PLN03228 methylthioalkylmalate 35.1 1.8E+02 0.0039 29.0 8.0 106 142-254 103-230 (503)
210 PRK08446 coproporphyrinogen II 35.0 3.2E+02 0.0069 25.6 9.5 59 141-201 161-230 (350)
211 PRK12323 DNA polymerase III su 34.9 1.1E+02 0.0025 31.6 6.7 70 142-212 104-175 (700)
212 cd07943 DRE_TIM_HOA 4-hydroxy- 34.9 3.3E+02 0.0072 24.3 15.6 23 73-95 20-42 (263)
213 KOG0922 DEAH-box RNA helicase 34.8 44 0.00095 34.1 3.7 38 154-193 414-451 (674)
214 cd06311 PBP1_ABC_sugar_binding 34.7 3.1E+02 0.0067 23.8 9.6 75 144-221 14-90 (274)
215 cd00954 NAL N-Acetylneuraminic 34.6 2.9E+02 0.0064 25.0 9.0 109 141-252 17-134 (288)
216 PF14606 Lipase_GDSL_3: GDSL-l 34.2 1.1E+02 0.0023 26.1 5.5 90 76-172 50-146 (178)
217 PRK07003 DNA polymerase III su 34.2 1.4E+02 0.003 31.6 7.1 97 142-248 99-197 (830)
218 PRK09545 znuA high-affinity zi 34.2 3.1E+02 0.0066 25.3 9.1 52 200-258 236-287 (311)
219 PF01890 CbiG_C: Cobalamin syn 34.1 76 0.0016 25.0 4.3 60 195-255 6-67 (121)
220 PRK14455 ribosomal RNA large s 33.6 2.8E+02 0.006 26.3 8.8 90 166-257 223-337 (356)
221 COG2022 ThiG Uncharacterized e 33.5 2.1E+02 0.0046 25.6 7.2 70 140-210 78-149 (262)
222 PF03599 CdhD: CO dehydrogenas 33.5 2.6E+02 0.0056 26.9 8.4 88 162-258 69-156 (386)
223 KOG2534 DNA polymerase IV (fam 33.4 1.6E+02 0.0035 27.5 6.7 124 162-311 189-322 (353)
224 cd00959 DeoC 2-deoxyribose-5-p 33.4 3.1E+02 0.0066 23.4 16.4 135 73-228 15-156 (203)
225 COG4130 Predicted sugar epimer 33.3 1.7E+02 0.0038 25.8 6.6 84 201-303 50-137 (272)
226 COG2062 SixA Phosphohistidine 33.1 2.9E+02 0.0063 23.1 7.9 80 111-206 35-115 (163)
227 PRK02901 O-succinylbenzoate sy 32.9 2.8E+02 0.006 25.9 8.6 82 164-258 162-244 (327)
228 COG3653 N-acyl-D-aspartate/D-g 32.9 4.9E+02 0.011 25.6 13.5 138 73-247 180-330 (579)
229 COG2874 FlaH Predicted ATPases 32.8 2E+02 0.0044 25.4 7.0 147 39-212 19-182 (235)
230 PF10566 Glyco_hydro_97: Glyco 32.8 1E+02 0.0022 28.1 5.4 58 199-256 28-96 (273)
231 cd07945 DRE_TIM_CMS Leptospira 32.7 51 0.0011 30.0 3.6 40 73-113 201-240 (280)
232 PRK05660 HemN family oxidoredu 32.7 2.3E+02 0.005 26.9 8.2 88 73-200 141-241 (378)
233 PRK15108 biotin synthase; Prov 32.5 4.3E+02 0.0092 24.8 10.2 65 142-210 76-144 (345)
234 cd06300 PBP1_ABC_sugar_binding 32.2 3.4E+02 0.0073 23.5 9.8 74 144-221 14-90 (272)
235 PRK11194 ribosomal RNA large s 32.2 4.6E+02 0.0099 25.1 10.3 88 168-257 222-337 (372)
236 PF12816 Vps8: Golgi CORVET co 32.1 34 0.00074 29.5 2.2 64 179-247 4-67 (196)
237 cd04740 DHOD_1B_like Dihydroor 32.1 3.8E+02 0.0083 24.2 12.0 126 74-210 101-251 (296)
238 PRK06015 keto-hydroxyglutarate 31.9 1.5E+02 0.0032 25.7 6.1 87 143-250 14-101 (201)
239 PRK09427 bifunctional indole-3 31.9 1.4E+02 0.003 29.4 6.6 63 156-227 274-338 (454)
240 PRK09490 metH B12-dependent me 31.8 6.4E+02 0.014 28.3 12.1 124 157-309 395-524 (1229)
241 TIGR00290 MJ0570_dom MJ0570-re 31.7 3.6E+02 0.0078 23.7 8.7 127 150-305 49-176 (223)
242 cd07948 DRE_TIM_HCS Saccharomy 31.3 2.9E+02 0.0062 24.9 8.1 96 148-252 24-131 (262)
243 PRK10508 hypothetical protein; 31.1 69 0.0015 30.0 4.2 42 142-187 286-327 (333)
244 PF07287 DUF1446: Protein of u 31.1 1.1E+02 0.0024 29.1 5.6 94 180-309 12-105 (362)
245 PRK01313 rnpA ribonuclease P; 31.0 2.4E+02 0.0051 22.6 6.7 60 126-188 48-113 (129)
246 TIGR02080 O_succ_thio_ly O-suc 30.9 4E+02 0.0087 25.2 9.5 13 238-250 158-170 (382)
247 TIGR00735 hisF imidazoleglycer 30.9 3.8E+02 0.0082 23.7 12.0 86 155-249 164-253 (254)
248 PRK05283 deoxyribose-phosphate 30.9 2.5E+02 0.0055 25.3 7.6 141 72-228 23-172 (257)
249 PRK09997 hydroxypyruvate isome 30.8 2.7E+02 0.0059 24.5 8.0 57 237-304 44-101 (258)
250 TIGR00289 conserved hypothetic 30.7 3.7E+02 0.0081 23.6 8.9 125 150-305 49-175 (222)
251 TIGR01210 conserved hypothetic 30.6 2.7E+02 0.0059 25.7 8.1 75 180-256 117-211 (313)
252 cd06543 GH18_PF-ChiA-like PF-C 30.6 4.3E+02 0.0093 24.3 11.5 167 74-257 89-264 (294)
253 TIGR01182 eda Entner-Doudoroff 30.5 1.8E+02 0.0038 25.3 6.3 88 143-251 18-106 (204)
254 COG0276 HemH Protoheme ferro-l 30.4 4.6E+02 0.0099 24.5 15.4 194 71-301 73-290 (320)
255 PF13380 CoA_binding_2: CoA bi 30.3 96 0.0021 24.1 4.3 16 236-251 92-107 (116)
256 TIGR01927 menC_gamma/gm+ o-suc 30.3 2.1E+02 0.0046 26.3 7.3 87 163-259 183-270 (307)
257 cd07937 DRE_TIM_PC_TC_5S Pyruv 30.2 2.1E+02 0.0046 25.8 7.2 99 148-252 23-137 (275)
258 PRK06424 transcription factor; 30.1 1.9E+02 0.0041 23.6 6.1 72 237-308 24-104 (144)
259 PRK13505 formate--tetrahydrofo 30.1 79 0.0017 31.8 4.5 55 203-258 359-413 (557)
260 TIGR01430 aden_deam adenosine 30.1 4.3E+02 0.0094 24.2 10.6 113 142-254 65-193 (324)
261 PRK01060 endonuclease IV; Prov 30.0 1.5E+02 0.0033 26.4 6.2 36 153-189 19-58 (281)
262 PRK10658 putative alpha-glucos 29.9 2.5E+02 0.0054 29.1 8.3 89 161-252 234-344 (665)
263 PF01297 TroA: Periplasmic sol 29.9 3.9E+02 0.0084 23.5 10.1 51 200-257 183-233 (256)
264 COG2896 MoaA Molybdenum cofact 29.9 4.7E+02 0.01 24.5 11.8 121 73-220 44-184 (322)
265 PRK03459 rnpA ribonuclease P; 29.8 2.6E+02 0.0056 22.1 6.7 61 126-189 49-114 (122)
266 TIGR01290 nifB nitrogenase cof 29.8 5.4E+02 0.012 25.1 11.6 109 142-258 60-199 (442)
267 COG0218 Predicted GTPase [Gene 29.8 3.7E+02 0.0081 23.3 9.6 100 74-189 90-198 (200)
268 PRK05283 deoxyribose-phosphate 29.6 4.2E+02 0.0092 23.9 8.9 80 76-164 148-227 (257)
269 COG1168 MalY Bifunctional PLP- 29.6 5.1E+02 0.011 24.9 14.7 133 74-232 40-207 (388)
270 TIGR00398 metG methionyl-tRNA 29.5 3.3E+02 0.007 27.1 9.0 47 145-193 68-114 (530)
271 cd01971 Nitrogenase_VnfN_like 29.4 4.9E+02 0.011 25.1 10.0 106 110-222 71-192 (427)
272 PF14871 GHL6: Hypothetical gl 29.1 38 0.00082 27.3 1.8 20 237-256 48-67 (132)
273 PLN00191 enolase 29.1 2.5E+02 0.0053 27.7 7.8 81 163-251 311-393 (457)
274 PF13378 MR_MLE_C: Enolase C-t 29.1 33 0.00071 26.1 1.4 52 198-254 3-54 (111)
275 PRK05628 coproporphyrinogen II 29.0 3.1E+02 0.0068 25.8 8.4 82 79-170 109-199 (375)
276 PRK00915 2-isopropylmalate syn 28.9 2.8E+02 0.006 27.7 8.3 106 142-254 23-140 (513)
277 PLN02951 Molybderin biosynthes 28.9 5.1E+02 0.011 24.6 14.9 138 72-230 90-240 (373)
278 cd00950 DHDPS Dihydrodipicolin 28.9 4.3E+02 0.0093 23.7 12.3 63 143-208 110-172 (284)
279 PLN02591 tryptophan synthase 28.7 4.3E+02 0.0093 23.7 11.1 121 148-308 15-138 (250)
280 COG0329 DapA Dihydrodipicolina 28.6 4.6E+02 0.01 24.0 11.6 109 142-258 22-143 (299)
281 PRK00164 moaA molybdenum cofac 28.5 3.3E+02 0.0072 25.0 8.4 76 181-258 109-201 (331)
282 TIGR02637 RhaS rhamnose ABC tr 28.5 4.2E+02 0.0091 23.5 10.3 74 144-221 13-86 (302)
283 cd06454 KBL_like KBL_like; thi 28.4 4.5E+02 0.0097 23.8 13.1 53 199-251 114-167 (349)
284 PRK14847 hypothetical protein; 28.4 3.3E+02 0.0071 25.6 8.1 104 148-256 56-180 (333)
285 TIGR02026 BchE magnesium-proto 28.3 3.2E+02 0.0069 27.1 8.6 75 175-252 223-303 (497)
286 PRK07534 methionine synthase I 28.3 5E+02 0.011 24.3 15.6 176 74-254 44-240 (336)
287 KOG0053 Cystathionine beta-lya 28.3 1.4E+02 0.0029 29.0 5.6 60 201-261 148-207 (409)
288 PRK09282 pyruvate carboxylase 28.2 2E+02 0.0044 29.3 7.3 67 151-217 31-110 (592)
289 PRK00499 rnpA ribonuclease P; 27.9 2.8E+02 0.0061 21.4 6.6 61 126-189 39-104 (114)
290 PLN02321 2-isopropylmalate syn 27.9 1.8E+02 0.0039 29.9 6.8 101 148-254 110-231 (632)
291 KOG2792 Putative cytochrome C 27.7 1.4E+02 0.0031 27.0 5.3 52 192-245 143-201 (280)
292 PRK00077 eno enolase; Provisio 27.7 2.7E+02 0.0058 27.0 7.8 96 143-251 262-361 (425)
293 TIGR03849 arch_ComA phosphosul 27.6 3.6E+02 0.0078 24.1 7.9 21 150-171 13-33 (237)
294 KOG0059 Lipid exporter ABCA1 a 27.5 2.3E+02 0.005 30.4 7.9 68 141-210 669-766 (885)
295 PF01081 Aldolase: KDPG and KH 27.4 1.8E+02 0.0039 25.1 5.8 60 179-251 46-106 (196)
296 TIGR01060 eno phosphopyruvate 27.4 2.9E+02 0.0063 26.8 8.0 83 163-253 278-365 (425)
297 PRK00507 deoxyribose-phosphate 27.4 4.2E+02 0.0092 23.2 14.0 134 72-226 19-159 (221)
298 PRK08508 biotin synthase; Prov 27.3 4.7E+02 0.01 23.6 9.4 75 180-255 102-188 (279)
299 PF01904 DUF72: Protein of unk 27.3 4.2E+02 0.0092 23.1 8.9 72 89-173 19-96 (230)
300 KOG2367 Alpha-isopropylmalate 27.1 3.8E+02 0.0083 26.6 8.4 128 69-211 198-326 (560)
301 TIGR00683 nanA N-acetylneurami 27.1 4.8E+02 0.01 23.7 13.5 66 142-209 110-175 (290)
302 PRK07379 coproporphyrinogen II 27.0 3.3E+02 0.0071 26.1 8.2 88 73-200 149-253 (400)
303 PF00809 Pterin_bind: Pterin b 27.0 4.1E+02 0.0089 22.9 10.9 87 157-255 30-125 (210)
304 TIGR00262 trpA tryptophan synt 27.0 4.6E+02 0.01 23.4 11.8 14 237-250 131-144 (256)
305 TIGR02666 moaA molybdenum cofa 26.9 2.4E+02 0.0053 26.0 7.2 74 182-258 104-196 (334)
306 PRK06294 coproporphyrinogen II 26.8 3.4E+02 0.0074 25.6 8.2 59 141-201 166-242 (370)
307 TIGR02015 BchY chlorophyllide 26.8 5.9E+02 0.013 24.6 12.0 55 110-173 72-126 (422)
308 PRK02842 light-independent pro 26.8 5.6E+02 0.012 24.7 9.8 101 110-219 81-194 (427)
309 COG2179 Predicted hydrolase of 26.7 2.3E+02 0.005 23.9 6.1 85 154-249 22-110 (175)
310 cd01017 AdcA Metal binding pro 26.7 4.6E+02 0.01 23.5 8.8 53 199-258 203-255 (282)
311 PRK06245 cofG FO synthase subu 26.5 5.2E+02 0.011 23.9 10.6 14 237-250 157-170 (336)
312 PF03279 Lip_A_acyltrans: Bact 26.5 4.8E+02 0.01 23.5 9.5 64 78-161 110-173 (295)
313 TIGR00538 hemN oxygen-independ 26.4 2.5E+02 0.0055 27.3 7.4 60 141-202 214-290 (455)
314 cd06312 PBP1_ABC_sugar_binding 26.1 4.3E+02 0.0094 22.9 9.6 74 144-222 15-88 (271)
315 PRK07027 cobalamin biosynthesi 25.9 1.3E+02 0.0029 23.8 4.5 54 200-254 14-68 (126)
316 PRK13347 coproporphyrinogen II 25.9 2.7E+02 0.0058 27.2 7.5 87 73-200 186-289 (453)
317 cd03466 Nitrogenase_NifN_2 Nit 25.9 6.1E+02 0.013 24.5 10.2 102 110-219 69-184 (429)
318 PRK14470 ribosomal RNA large s 25.8 5.6E+02 0.012 24.0 9.4 81 175-257 229-322 (336)
319 cd06316 PBP1_ABC_sugar_binding 25.7 4.6E+02 0.0099 23.1 8.6 74 144-222 14-87 (294)
320 cd06594 GH31_glucosidase_YihQ 25.7 1.4E+02 0.0031 27.7 5.3 52 201-252 21-90 (317)
321 PRK03031 rnpA ribonuclease P; 25.7 3.3E+02 0.007 21.3 6.7 62 126-189 48-114 (122)
322 PF05378 Hydant_A_N: Hydantoin 25.6 97 0.0021 26.1 3.8 21 177-198 134-154 (176)
323 PLN02775 Probable dihydrodipic 25.5 4.1E+02 0.0089 24.4 8.1 56 151-209 68-123 (286)
324 PRK05826 pyruvate kinase; Prov 25.4 6.7E+02 0.014 24.8 11.4 90 78-192 176-274 (465)
325 PRK07535 methyltetrahydrofolat 25.4 5E+02 0.011 23.3 9.8 109 79-201 80-200 (261)
326 smart00633 Glyco_10 Glycosyl h 25.3 3.2E+02 0.0068 24.2 7.3 108 143-253 101-225 (254)
327 COG3185 4-hydroxyphenylpyruvat 25.3 58 0.0013 30.7 2.5 71 8-98 207-277 (363)
328 TIGR03699 mena_SCO4550 menaqui 25.2 5.5E+02 0.012 23.7 12.8 125 72-216 72-223 (340)
329 PRK06552 keto-hydroxyglutarate 25.0 2.3E+02 0.0049 24.7 6.1 88 143-251 23-114 (213)
330 cd06604 GH31_glucosidase_II_Ma 24.9 1.4E+02 0.0031 27.8 5.2 50 201-252 22-83 (339)
331 COG3454 Metal-dependent hydrol 24.8 80 0.0017 29.6 3.3 42 198-250 186-227 (377)
332 PRK07764 DNA polymerase III su 24.7 2.4E+02 0.0053 30.0 7.3 97 143-249 101-199 (824)
333 cd07941 DRE_TIM_LeuA3 Desulfob 24.7 1E+02 0.0022 27.8 4.1 39 76-115 208-246 (273)
334 TIGR00036 dapB dihydrodipicoli 24.6 3.8E+02 0.0081 24.1 7.7 63 161-228 67-129 (266)
335 PRK08208 coproporphyrinogen II 24.6 5.6E+02 0.012 24.8 9.4 59 141-201 204-274 (430)
336 TIGR00655 PurU formyltetrahydr 24.5 5.4E+02 0.012 23.4 12.8 141 76-251 13-165 (280)
337 cd07947 DRE_TIM_Re_CS Clostrid 24.5 81 0.0017 28.8 3.3 43 75-119 215-257 (279)
338 cd03770 SR_TndX_transposase Se 24.3 1.5E+02 0.0032 23.7 4.5 25 149-173 55-79 (140)
339 PF13289 SIR2_2: SIR2-like dom 24.3 2E+02 0.0042 22.4 5.3 68 177-250 74-143 (143)
340 COG3033 TnaA Tryptophanase [Am 24.2 1.5E+02 0.0033 28.4 5.0 52 199-250 168-223 (471)
341 COG0289 DapB Dihydrodipicolina 24.2 2.1E+02 0.0046 25.9 5.8 51 174-227 77-127 (266)
342 PRK08445 hypothetical protein; 24.2 6E+02 0.013 23.8 10.6 21 237-257 186-206 (348)
343 CHL00200 trpA tryptophan synth 23.9 5.4E+02 0.012 23.2 11.5 121 148-308 28-151 (263)
344 PRK08208 coproporphyrinogen II 23.9 6.6E+02 0.014 24.2 11.3 67 150-216 142-221 (430)
345 PRK11559 garR tartronate semia 23.8 2.4E+02 0.0053 25.4 6.4 22 286-307 182-203 (296)
346 TIGR03821 AblA_like_1 lysine-2 23.8 5.3E+02 0.011 23.9 8.7 88 127-219 175-267 (321)
347 PF13602 ADH_zinc_N_2: Zinc-bi 23.8 83 0.0018 24.1 2.9 41 176-216 80-120 (127)
348 PF00578 AhpC-TSA: AhpC/TSA fa 23.8 2.3E+02 0.0049 21.3 5.5 34 178-211 43-79 (124)
349 PF06415 iPGM_N: BPG-independe 23.7 3.5E+02 0.0076 23.9 7.0 76 176-251 13-99 (223)
350 PLN02376 1-aminocyclopropane-1 23.5 7.2E+02 0.016 24.5 11.8 21 201-221 217-237 (496)
351 PF11020 DUF2610: Domain of un 23.3 91 0.002 22.8 2.7 24 285-308 49-72 (82)
352 PF01301 Glyco_hydro_35: Glyco 23.2 3.1E+02 0.0066 25.5 7.0 61 237-300 67-133 (319)
353 COG0497 RecN ATPase involved i 23.2 87 0.0019 31.6 3.5 31 278-308 294-324 (557)
354 PRK14468 ribosomal RNA large s 23.2 6.3E+02 0.014 23.7 10.3 91 165-257 206-321 (343)
355 PRK04390 rnpA ribonuclease P; 23.0 3.7E+02 0.008 21.0 6.9 61 126-188 45-109 (120)
356 PF02679 ComA: (2R)-phospho-3- 23.0 1.4E+02 0.003 26.8 4.4 24 149-173 25-48 (244)
357 PRK14040 oxaloacetate decarbox 22.9 4.2E+02 0.0091 27.1 8.3 95 148-251 29-142 (593)
358 PF13344 Hydrolase_6: Haloacid 22.9 82 0.0018 23.7 2.6 48 175-223 15-62 (101)
359 cd01994 Alpha_ANH_like_IV This 22.9 4.8E+02 0.01 22.2 11.5 99 149-258 48-149 (194)
360 PRK00133 metG methionyl-tRNA s 22.7 4.4E+02 0.0096 27.2 8.7 47 145-193 71-117 (673)
361 PRK12558 glutamyl-tRNA synthet 22.7 3.2E+02 0.007 26.8 7.2 68 142-216 48-115 (445)
362 PF05049 IIGP: Interferon-indu 22.6 3.3E+02 0.007 26.1 7.1 61 109-173 129-201 (376)
363 PRK00377 cbiT cobalt-precorrin 22.6 3.5E+02 0.0076 22.7 6.9 63 161-227 110-173 (198)
364 TIGR02109 PQQ_syn_pqqE coenzym 22.6 6.2E+02 0.014 23.5 9.6 13 238-250 165-177 (358)
365 PRK12267 methionyl-tRNA synthe 22.6 5.1E+02 0.011 26.6 9.1 48 145-194 73-120 (648)
366 PF07302 AroM: AroM protein; 22.5 5.4E+02 0.012 22.7 13.5 161 75-255 13-187 (221)
367 PF13580 SIS_2: SIS domain; PD 22.5 75 0.0016 25.4 2.5 42 73-120 20-61 (138)
368 cd03314 MAL Methylaspartate am 22.4 5.6E+02 0.012 24.4 8.7 85 165-254 229-320 (369)
369 COG0826 Collagenase and relate 22.1 1.8E+02 0.0039 27.5 5.3 20 199-218 45-64 (347)
370 PRK00507 deoxyribose-phosphate 22.1 4.8E+02 0.01 22.8 7.6 24 75-98 136-159 (221)
371 cd03174 DRE_TIM_metallolyase D 22.1 5.3E+02 0.012 22.5 13.9 23 73-95 17-39 (265)
372 PRK05799 coproporphyrinogen II 21.8 5E+02 0.011 24.4 8.3 28 141-169 162-189 (374)
373 TIGR00238 KamA family protein. 21.8 6.5E+02 0.014 23.4 11.5 24 237-260 241-264 (331)
374 TIGR02660 nifV_homocitr homoci 21.8 4.1E+02 0.0089 25.1 7.7 94 148-250 25-130 (365)
375 COG1082 IolE Sugar phosphate i 21.8 4.9E+02 0.011 22.7 7.9 52 237-304 49-100 (274)
376 PRK10826 2-deoxyglucose-6-phos 21.7 2.1E+02 0.0045 24.5 5.3 36 175-211 93-128 (222)
377 cd00405 PRAI Phosphoribosylant 21.7 1.8E+02 0.0038 24.8 4.8 41 162-205 73-113 (203)
378 COG1831 Predicted metal-depend 21.7 3E+02 0.0066 25.1 6.2 40 181-220 149-188 (285)
379 cd00338 Ser_Recombinase Serine 21.7 1.8E+02 0.004 22.5 4.6 25 149-173 52-76 (137)
380 PF01118 Semialdhyde_dh: Semia 21.7 1E+02 0.0022 23.9 3.0 26 75-100 77-102 (121)
381 TIGR03699 mena_SCO4550 menaqui 21.6 5.3E+02 0.012 23.8 8.4 14 181-194 144-157 (340)
382 PRK14469 ribosomal RNA large s 21.6 6.5E+02 0.014 23.5 8.9 80 175-256 233-324 (343)
383 PRK09061 D-glutamate deacylase 21.5 7.5E+02 0.016 24.5 9.8 105 145-251 169-280 (509)
384 TIGR02629 L_rham_iso_rhiz L-rh 21.5 3.4E+02 0.0074 26.3 7.0 33 223-255 88-120 (412)
385 COG1121 ZnuC ABC-type Mn/Zn tr 21.5 3.7E+02 0.0081 24.2 6.9 47 160-208 155-205 (254)
386 cd03328 MR_like_3 Mandelate ra 21.4 6.8E+02 0.015 23.4 13.8 152 74-253 139-293 (352)
387 cd01834 SGNH_hydrolase_like_2 21.3 2.5E+02 0.0055 22.7 5.6 101 192-304 36-150 (191)
388 KOG1321 Protoheme ferro-lyase 21.3 1.8E+02 0.0039 27.2 4.8 64 179-245 142-212 (395)
389 PF12646 DUF3783: Domain of un 21.2 2.1E+02 0.0046 19.2 4.1 37 195-231 4-42 (58)
390 COG1560 HtrB Lauroyl/myristoyl 21.2 6.7E+02 0.014 23.3 9.7 86 77-192 111-196 (308)
391 cd02069 methionine_synthase_B1 21.2 4.9E+02 0.011 22.6 7.5 22 73-94 13-34 (213)
392 PRK14041 oxaloacetate decarbox 21.1 4.2E+02 0.009 26.2 7.7 11 155-165 34-44 (467)
393 smart00812 Alpha_L_fucos Alpha 21.1 2.1E+02 0.0045 27.4 5.5 16 237-252 132-147 (384)
394 COG3172 NadR Predicted ATPase/ 21.1 3.3E+02 0.0072 23.1 5.9 88 87-190 79-185 (187)
395 cd06595 GH31_xylosidase_XylS-l 21.0 2.1E+02 0.0045 26.1 5.4 55 199-253 21-94 (292)
396 TIGR01286 nifK nitrogenase mol 21.0 5.7E+02 0.012 25.6 8.8 108 110-221 127-252 (515)
397 PRK10936 TMAO reductase system 21.0 6.5E+02 0.014 23.1 10.0 73 144-221 61-133 (343)
398 cd06306 PBP1_TorT-like TorT-li 20.9 5.6E+02 0.012 22.2 9.9 73 144-221 14-86 (268)
399 PRK00414 gmhA phosphoheptose i 20.8 5.2E+02 0.011 21.9 9.5 118 74-208 30-155 (192)
400 PF00697 PRAI: N-(5'phosphorib 20.8 3.5E+02 0.0076 23.0 6.5 66 155-228 15-81 (197)
401 KOG2915 tRNA(1-methyladenosine 20.7 2.4E+02 0.0052 25.9 5.4 56 163-224 178-236 (314)
402 PRK09358 adenosine deaminase; 20.7 6.7E+02 0.014 23.1 10.3 111 142-252 74-201 (340)
403 cd01832 SGNH_hydrolase_like_1 20.7 4.6E+02 0.01 21.2 7.6 54 237-305 96-149 (185)
404 cd06570 GH20_chitobiase-like_1 20.6 94 0.002 28.8 3.0 48 200-251 15-86 (311)
405 PLN02610 probable methionyl-tR 20.6 3.9E+02 0.0084 28.4 7.8 46 146-193 88-133 (801)
406 PF01476 LysM: LysM domain; I 20.5 63 0.0014 19.8 1.3 17 292-308 8-24 (44)
407 TIGR01212 radical SAM protein, 20.4 6.6E+02 0.014 22.9 13.3 74 142-218 91-178 (302)
408 PLN02623 pyruvate kinase 20.4 9.2E+02 0.02 24.6 11.7 70 79-172 282-351 (581)
409 COG0626 MetC Cystathionine bet 20.2 4.1E+02 0.0089 25.6 7.3 16 146-161 114-129 (396)
410 cd05007 SIS_Etherase N-acetylm 20.1 6.3E+02 0.014 22.5 10.4 54 153-208 109-162 (257)
411 PRK08574 cystathionine gamma-s 20.1 5.8E+02 0.013 24.1 8.4 13 238-250 159-171 (385)
412 cd06597 GH31_transferase_CtsY 20.1 2.4E+02 0.0051 26.5 5.6 52 201-252 22-104 (340)
413 cd06320 PBP1_allose_binding Pe 20.0 5.7E+02 0.012 22.0 10.1 14 237-250 143-157 (275)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=1.5e-59 Score=434.37 Aligned_cols=252 Identities=37% Similarity=0.594 Sum_probs=223.4
Q ss_pred cceeecCCCCcccccceecccccCCCCCCCCCcCchhhHHHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHH
Q 021569 36 EDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGR 115 (311)
Q Consensus 36 m~~~~lg~sg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~ 115 (311)
|++++||++|++||+||||||.||+. ..+.+.+++.++|++|+|+||||||||++||.|.| |++||+
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~-------~~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~s------E~ilG~ 67 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGD-------TDDEEEAEAIEILDAALDAGINFFDTADVYGDGRS------EEILGE 67 (316)
T ss_pred CCceecCCCCceecceeeeccccCCC-------CCchhhhHHHHHHHHHHHcCCCEEECccccCCCch------HHHHHH
Confidence 78999999999999999999999864 22334567888999999999999999999999987 999999
Q ss_pred HHHhccCCCCCccEEEEeeccCCC--------CCCCHHHHHHHHHHHHHhhCCCCcceEEecCCCC-CChHHHHHHHHHH
Q 021569 116 FIKERKQRDPEVEVTVATKFAALP--------WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDA 186 (311)
Q Consensus 116 al~~~~~~~~R~~~~I~tK~~~~~--------~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~-~~~~~~~~~l~~l 186 (311)
||+.++. |++++|+||++..+ .+.++++|+++++.||+|||||||||||+||||+ .+.++++++|.+|
T Consensus 68 ~l~~~~~---Rd~vvIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p~~e~~~aL~~l 144 (316)
T COG0667 68 ALKERGR---RDKVVIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETPIEETLEALDEL 144 (316)
T ss_pred HHhccCC---CCeEEEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCCHHHHHHHHHHH
Confidence 9998863 69999999998653 3468999999999999999999999999999998 7899999999999
Q ss_pred HHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeeeeeccCcCcCCccccchhHHHHHhCCeEEEcccCccccccCCCCC
Q 021569 187 VEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTP 266 (311)
Q Consensus 187 ~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spL~~G~Ltg~~~~ 266 (311)
+++||||+||+||++.+++.++.+.+ .+++++|.+||+++|+.+. +++++|+++||++++||||++|+|+|||.+
T Consensus 145 ~~~G~ir~iG~S~~~~~~i~~a~~~~----~~~~~~Q~~ynl~~R~~e~-~l~~~~~~~gi~~~~~spla~G~Ltgk~~~ 219 (316)
T COG0667 145 VREGKIRYIGVSNYSAEQIAEALAVA----APIDSLQPEYNLLERDAEK-ELLPLCREEGIGLLAYSPLASGLLTGKYLP 219 (316)
T ss_pred HHcCCeeEEEecCCCHHHHHHHHHhc----CCceeecccCccccccchh-HHHHHHHHcCCeEEEecCccccccCCCcCC
Confidence 99999999999999999999998774 4799999999999987665 499999999999999999999999999987
Q ss_pred CCCCCCCCC---CCCchHhHhhHHHHHHHHHHHHHhcCCCcchhccC
Q 021569 267 QNPPTGPRG---RIYTAEYLRNLQPLLNRIKELGENYSKTSTQFSVD 310 (311)
Q Consensus 267 ~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~iA~~~g~s~~qvaL~ 310 (311)
. +.+.|. ..+..+..++..++++.++++|+++|+||+|+||+
T Consensus 220 ~--~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~ALa 264 (316)
T COG0667 220 G--PEGSRASELPRFQRELTERGLAILRALEELAKELGATPAQVALA 264 (316)
T ss_pred C--cchhhccccccchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 5 333332 23445567788899999999999999999999985
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=5.8e-59 Score=424.07 Aligned_cols=261 Identities=35% Similarity=0.540 Sum_probs=226.1
Q ss_pred cccccccceeecCCCCcccccceecccccCCCCCCCCCcCchhhHHHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCch
Q 021569 30 ATVKTAEDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINS 109 (311)
Q Consensus 30 ~~~~~~m~~~~lg~sg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~s 109 (311)
.+....|.++++|++|++||+||||||.+. +|+. . .+++++++++++|+|+|+||||||++||+|.+
T Consensus 6 ~~~~~~~~~~~lg~~gl~Vs~lglG~m~~~---~~~~---~-~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~------ 72 (336)
T KOG1575|consen 6 PSTELGMLRRKLGNSGLKVSPLGLGCMGWT---TFGG---Q-IDKEEAFELLDHAYEAGINFFDTAEVYGNGQS------ 72 (336)
T ss_pred ccchhcceeeeccCCCceecceeecceeee---cccc---C-CCHHHHHHHHHHHHHcCCCEEehhhhcCCccc------
Confidence 344557999999999999999999998332 1222 2 46799999999999999999999999999887
Q ss_pred HHHHHHHHHhccCCCCCccEEEEeeccCCC-----CCCCHHHHHHHHHHHHHhhCCCCcceEEecCCCC-CChHHHHHHH
Q 021569 110 ETLLGRFIKERKQRDPEVEVTVATKFAALP-----WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGL 183 (311)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~~~~~-----~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~-~~~~~~~~~l 183 (311)
|+++|++|++++. +|+++||+||++... ++.+..++...++.||+||+++||||||+||+|+ .|.++++++|
T Consensus 73 E~llg~~i~~~~~--~R~~vviaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~piee~m~aL 150 (336)
T KOG1575|consen 73 EELLGEFIKSRGW--RRDKVVIATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVPIEETMRAL 150 (336)
T ss_pred HHHHHHHHHhcCC--cCCcEEEEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCCHHHHHHHH
Confidence 9999999999864 389999999998643 5677889999999999999999999999999998 8999999999
Q ss_pred HHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeeeeeccCcCcCCccccchhHHHHHhCCeEEEcccCccccccCC
Q 021569 184 GDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGK 263 (311)
Q Consensus 184 ~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spL~~G~Ltg~ 263 (311)
.+|+++|||||||+|++++++|.++..++. ++|+++|++||++.|..++++++++|+++||++++||||++|+|||+
T Consensus 151 ~~lve~Gki~yiGlSe~sa~~I~~a~~~~~---~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk 227 (336)
T KOG1575|consen 151 TDLVEQGKIRYWGLSEWSAEEIREAHAVAP---IPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGK 227 (336)
T ss_pred HHHHhcCceEEEEeccCCHHHHHHHHHhcC---CCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceeccC
Confidence 999999999999999999999999998854 67999999999999998888899999999999999999999999999
Q ss_pred CCCCC-CCCCCCCCC-------CchHhHhhHHHHHHHHHHHHHhcCCCcchhccC
Q 021569 264 YTPQN-PPTGPRGRI-------YTAEYLRNLQPLLNRIKELGENYSKTSTQFSVD 310 (311)
Q Consensus 264 ~~~~~-~~~~~~~~~-------~~~~~~~~~~~~~~~l~~iA~~~g~s~~qvaL~ 310 (311)
|...+ .+.+..... +..+ +.++.+++++.+||+++|+|++|+||+
T Consensus 228 ~~~~e~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~iA~k~g~T~~qlALa 280 (336)
T KOG1575|consen 228 YKLGEDSRNGDKRFQFLGLSPQTEEG--DKQKPILEALSKIAEKHGCTVPQLALA 280 (336)
T ss_pred cccccccccccccccccccccccchh--hhHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 98543 333322111 1111 567888999999999999999999985
No 3
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=1.1e-56 Score=401.88 Aligned_cols=216 Identities=34% Similarity=0.569 Sum_probs=192.3
Q ss_pred cceeecCCCCcccccceecccccCCCCCCCCCcCchhhHHHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHH
Q 021569 36 EDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGR 115 (311)
Q Consensus 36 m~~~~lg~sg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~ 115 (311)
+++.+|++ |.+||.||||||++++. +.+.+.|.+|++.|||+||||.+||| |+.+|+
T Consensus 3 ~~~~~l~~-g~~iP~iGlGt~~~~~~-------------~~~~~av~~Al~~Gyr~IDTA~~Ygn---------E~~VG~ 59 (280)
T COG0656 3 KTKVTLNN-GVEIPAIGLGTWQIGDD-------------EWAVRAVRAALELGYRLIDTAEIYGN---------EEEVGE 59 (280)
T ss_pred CceeecCC-CCcccCcceEeeecCCc-------------hhHHHHHHHHHHhCcceEecHhHhcC---------HHHHHH
Confidence 56688887 88899999999998764 34889999999999999999999998 999999
Q ss_pred HHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHHHHHHhhCCCCcceEEecCCCCC--C-hHHHHHHHHHHHHcCcc
Q 021569 116 FIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW--G-NEGFIDGLGDAVEQGLV 192 (311)
Q Consensus 116 al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~--~-~~~~~~~l~~l~~~G~i 192 (311)
+|++.+ .+|+++||+||+++ ..++++.+.+++++||+|||+||||||+||||.+. . .+++|++|++++++|||
T Consensus 60 aI~~s~--v~ReelFittKvw~--~~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~i 135 (280)
T COG0656 60 AIKESG--VPREELFITTKVWP--SDLGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLI 135 (280)
T ss_pred HHHhcC--CCHHHeEEEeecCC--ccCCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCc
Confidence 999944 46999999999976 45788999999999999999999999999999752 2 57999999999999999
Q ss_pred ceEeecCCcHHHHHHHHHHHHhcCCCeeeeeeccCcCcCCccccchhHHHHHhCCeEEEcccCccccccCCCCCCCCCCC
Q 021569 193 KAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTG 272 (311)
Q Consensus 193 r~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spL~~G~Ltg~~~~~~~~~~ 272 (311)
|+||||||+.++|+++++. .++.|++||++|||+.++.+ ++++|+++||.++|||||++|-.
T Consensus 136 r~IGVSNF~~~~L~~l~~~---~~~~p~~NQIe~hp~~~q~e---l~~~~~~~gI~v~AysPL~~g~~------------ 197 (280)
T COG0656 136 RAIGVSNFGVEHLEELLSL---AKVKPAVNQIEYHPYLRQPE---LLPFCQRHGIAVEAYSPLAKGGK------------ 197 (280)
T ss_pred cEEEeeCCCHHHHHHHHHh---cCCCCceEEEEeccCCCcHH---HHHHHHHcCCEEEEECCcccccc------------
Confidence 9999999999999999876 45789999999999999875 99999999999999999997521
Q ss_pred CCCCCCchHhHhhHHHHHHHHHHHHHhcCCCcchhccC
Q 021569 273 PRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQFSVD 310 (311)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~~qvaL~ 310 (311)
++..+ .|.+||++||+|++||+||
T Consensus 198 ----l~~~~----------~l~~Ia~k~g~t~AQv~L~ 221 (280)
T COG0656 198 ----LLDNP----------VLAEIAKKYGKTPAQVALR 221 (280)
T ss_pred ----cccCh----------HHHHHHHHhCCCHHHHHHH
Confidence 22332 7999999999999999986
No 4
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=1.4e-54 Score=407.21 Aligned_cols=259 Identities=30% Similarity=0.441 Sum_probs=215.4
Q ss_pred cccceeecCCCCcccccceecccc-cCCCCCCCCCcCchhhHHHHHHHHHHHHHcCCCeEEcCCCCCC--CcCCCCCchH
Q 021569 34 TAEDKVKLGGSDLKVTKLGVGAWS-WGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGS--RASFGAINSE 110 (311)
Q Consensus 34 ~~m~~~~lg~sg~~vs~lglGt~~-~g~~~~~~~~~~~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~--g~s~~~~~sE 110 (311)
+.|++++||+||++||+||||||+ +|.. .+.+++.++|+.|+|+|||+||||+.||+ |.| |
T Consensus 11 ~~m~~r~lg~tg~~vs~lglG~~~~~g~~----------~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~s------E 74 (346)
T PRK09912 11 GQMQYRYCGKSGLRLPALSLGLWHNFGHV----------NALESQRAILRKAFDLGITHFDLANNYGPPPGSA------E 74 (346)
T ss_pred CCcceeecCCCCcccccccccCccccCCC----------CCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCc------H
Confidence 359999999999999999999996 4421 23467899999999999999999999995 777 9
Q ss_pred HHHHHHHHhccCCCCCccEEEEeeccCC--C----CCCCHHHHHHHHHHHHHhhCCCCcceEEecCCCC-CChHHHHHHH
Q 021569 111 TLLGRFIKERKQRDPEVEVTVATKFAAL--P----WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGL 183 (311)
Q Consensus 111 ~~lG~al~~~~~~~~R~~~~I~tK~~~~--~----~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~-~~~~~~~~~l 183 (311)
++||++|++.... +|+++||+||++.. + ...+++++++++++||+|||+||||+|++|||++ .+.+++|++|
T Consensus 75 ~~lG~~l~~~~~~-~Rd~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~e~~~al 153 (346)
T PRK09912 75 ENFGRLLREDFAA-YRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASAL 153 (346)
T ss_pred HHHHHHHHhcccC-CCCeEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCHHHHHHHH
Confidence 9999999864211 37999999998631 1 1356999999999999999999999999999987 6789999999
Q ss_pred HHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeeeeeccCcCcCCccccchhHHHHHhCCeEEEcccCccccccCC
Q 021569 184 GDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGK 263 (311)
Q Consensus 184 ~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spL~~G~Ltg~ 263 (311)
++|+++||||+||||||++++++++.+.+...++++.++|++||++++..+.++++++|+++||++++|+||++|+|+++
T Consensus 154 ~~l~~~GkIr~iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt~~ 233 (346)
T PRK09912 154 AHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGK 233 (346)
T ss_pred HHHHHcCCeeEEEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCccccCC
Confidence 99999999999999999999999988877666778899999999999876655799999999999999999999999999
Q ss_pred CCCCCCCCCCCC-------CCCchHhH-hhHHHHHHHHHHHHHhcCCCcchhccC
Q 021569 264 YTPQNPPTGPRG-------RIYTAEYL-RNLQPLLNRIKELGENYSKTSTQFSVD 310 (311)
Q Consensus 264 ~~~~~~~~~~~~-------~~~~~~~~-~~~~~~~~~l~~iA~~~g~s~~qvaL~ 310 (311)
|.+.. |.+.+. +.+.+..+ +...++++.|+++|+++|+|++|+||+
T Consensus 234 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~ 287 (346)
T PRK09912 234 YLNGI-PQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALS 287 (346)
T ss_pred CCCCC-CCCccccccccchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 86532 222110 01222222 334566788999999999999999985
No 5
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=1.2e-54 Score=403.22 Aligned_cols=255 Identities=26% Similarity=0.378 Sum_probs=211.2
Q ss_pred eeecCCCCcccccceecccccCCCCCCCCCcCchhhHHHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHH
Q 021569 38 KVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI 117 (311)
Q Consensus 38 ~~~lg~sg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al 117 (311)
||+||++|++||+||||||.+.+. ..+.+++.++|+.|+++|||+||||++||.|.| |++||+||
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~~g~---------~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~s------E~~lG~~l 65 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVTFGG---------QISDEMAEQLLTLAYENGINLFDTAEVYAAGKA------EVVLGNIL 65 (317)
T ss_pred CcccCCCCCeecceeecCCccCCC---------CCCHHHHHHHHHHHHHcCCCeEECccccCCCcc------HHHHHHHH
Confidence 578999999999999999973221 134578999999999999999999999999888 99999999
Q ss_pred HhccCCCCCccEEEEeeccCC-----CCCCCHHHHHHHHHHHHHhhCCCCcceEEecCCCC-CChHHHHHHHHHHHHcCc
Q 021569 118 KERKQRDPEVEVTVATKFAAL-----PWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQGL 191 (311)
Q Consensus 118 ~~~~~~~~R~~~~I~tK~~~~-----~~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~-~~~~~~~~~l~~l~~~G~ 191 (311)
+.... +|+++||+||++.. ..+++++.++++|++||+||||||||+|++|||++ .+.+++|++|++|+++||
T Consensus 66 ~~~~~--~R~~~~iaTK~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~~~e~~~aL~~l~~~G~ 143 (317)
T TIGR01293 66 KKKGW--RRSSYVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTPMEETVRAMTYVINQGM 143 (317)
T ss_pred HhcCC--CcccEEEEeeeccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCCHHHHHHHHHHHHHcCC
Confidence 86431 37999999998531 12467999999999999999999999999999987 578899999999999999
Q ss_pred cceEeecCCcHHHHHHHHHHHHhcC-CCeeeeeeccCcCcCCccccchhHHHHHhCCeEEEcccCccccccCCCCCCCCC
Q 021569 192 VKAVGVSNYSEKRLRNAYEKLKKRG-IPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPP 270 (311)
Q Consensus 192 ir~iGvSn~~~~~l~~~~~~~~~~g-~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spL~~G~Ltg~~~~~~~~ 270 (311)
||+||||||+.++++++...+...+ ++|+++|++||+++++..+++++++|+++||++++|+||++|+|+|+|.... +
T Consensus 144 ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Ltg~~~~~~-~ 222 (317)
T TIGR01293 144 AMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVSGKYDSGI-P 222 (317)
T ss_pred eeEEEecCCCHHHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccCCCCCCCC-C
Confidence 9999999999999998877666555 5789999999999987544469999999999999999999999999986532 2
Q ss_pred CCCCCC-----CCch----HhHhhHHHHHHHHHHHHHhcCCCcchhccC
Q 021569 271 TGPRGR-----IYTA----EYLRNLQPLLNRIKELGENYSKTSTQFSVD 310 (311)
Q Consensus 271 ~~~~~~-----~~~~----~~~~~~~~~~~~l~~iA~~~g~s~~qvaL~ 310 (311)
.+.+.. ++.. +......+.++.|+++|+++|+|++|+||+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~ 271 (317)
T TIGR01293 223 PYSRATLKGYQWLKDKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIA 271 (317)
T ss_pred CcccccccccchhhhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 222211 1111 112234566788999999999999999985
No 6
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=6.8e-54 Score=402.74 Aligned_cols=255 Identities=27% Similarity=0.424 Sum_probs=212.6
Q ss_pred cceeecCCCCcccccceecccccCCCCCCCCCcCchhhHHHHHHHHHHHHHcCCCeEEcCCCCCC-------CcCCCCCc
Q 021569 36 EDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGS-------RASFGAIN 108 (311)
Q Consensus 36 m~~~~lg~sg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~-------g~s~~~~~ 108 (311)
|+|++||+||++||+||||||.||.. .+.+++.++|+.|+++||||||||+.||. |.|
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~~----------~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~s----- 65 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGEQ----------NSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLT----- 65 (346)
T ss_pred CCceecCCCCCccccEeEeccccCCC----------CCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCch-----
Confidence 78999999999999999999998753 23578999999999999999999999984 666
Q ss_pred hHHHHHHHHHhccCCCCCccEEEEeeccCCC----------CCCCHHHHHHHHHHHHHhhCCCCcceEEecCCCC-----
Q 021569 109 SETLLGRFIKERKQRDPEVEVTVATKFAALP----------WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI----- 173 (311)
Q Consensus 109 sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~----------~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~----- 173 (311)
|++||++|+... +|+++||+||++... ...+++.++++|++||+|||+||||||++|||+.
T Consensus 66 -E~~iG~aL~~~~---~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~ 141 (346)
T PRK10625 66 -ETYIGNWLAKRG---SREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCF 141 (346)
T ss_pred -HHHHHHHHhhcC---CcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccc
Confidence 999999998643 379999999985311 1367999999999999999999999999999864
Q ss_pred -------------CChHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCC-CeeeeeeccCcCcCCccccchh
Q 021569 174 -------------WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGI-PLASNQVNYSLIYRKPEENGVK 239 (311)
Q Consensus 174 -------------~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~-~~~~~Q~~~~~~~~~~~~~~l~ 239 (311)
.+.+++|++|++|+++||||+||+|||+.++++++...+...++ .+.++|++||++++..+. +++
T Consensus 142 ~~~~~~~~~~~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~-~ll 220 (346)
T PRK10625 142 GKLGYSWTDSAPAVSLLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEV-GLA 220 (346)
T ss_pred cccccccccccCCCCHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchh-HHH
Confidence 24689999999999999999999999999999998876666554 588999999999987543 699
Q ss_pred HHHHHhCCeEEEcccCccccccCCCCCCCCCCCCCCCCC---chHhHhhHHHHHHHHHHHHHhcCCCcchhccC
Q 021569 240 AACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIY---TAEYLRNLQPLLNRIKELGENYSKTSTQFSVD 310 (311)
Q Consensus 240 ~~~~~~gi~v~a~spL~~G~Ltg~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~iA~~~g~s~~qvaL~ 310 (311)
++|+++||++++|+||++|+|+|+|.....|.+.+...+ .+.......++++.|+++|+++|+|++|+||+
T Consensus 221 ~~~~~~gi~via~spL~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~ 294 (346)
T PRK10625 221 EVSQYEGVELLAYSCLAFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALA 294 (346)
T ss_pred HHHHHcCCeEEEeccccCeeccCCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 999999999999999999999999865443433221111 11111345667789999999999999999985
No 7
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=5e-52 Score=385.25 Aligned_cols=245 Identities=23% Similarity=0.327 Sum_probs=204.0
Q ss_pred eeecCCCCcccccceecccccCCCCCCCCCcCchhhHHHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHH
Q 021569 38 KVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI 117 (311)
Q Consensus 38 ~~~lg~sg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al 117 (311)
||+||+||++||+||||||+||.. |+ ..+.+++.++|++|++.|||+||||+.||.|.| |+.||++|
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~--~~-----~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s------E~~lG~al 67 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSV--FG-----PVSEEDAIASVREAFRLGINFFDTSPYYGGTLS------EKVLGKAL 67 (314)
T ss_pred CCcCCCCCCcccCcccccccccCC--CC-----CCCHHHHHHHHHHHHHcCCCEEECcCccCCCch------HHHHHHHH
Confidence 678999999999999999999853 33 245588999999999999999999999999988 99999999
Q ss_pred HhccCCCCCccEEEEeeccCCC--CCCCHHHHHHHHHHHHHhhCCCCcceEEecCCCC----CChHHHHHHHHHHHHcCc
Q 021569 118 KERKQRDPEVEVTVATKFAALP--WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI----WGNEGFIDGLGDAVEQGL 191 (311)
Q Consensus 118 ~~~~~~~~R~~~~I~tK~~~~~--~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~----~~~~~~~~~l~~l~~~G~ 191 (311)
++.+. +|+++||+||++..+ .+++++.+++++++||+|||+||||+|+||||+. .+.+++|++|++|+++||
T Consensus 68 ~~~~~--~R~~v~I~TK~~~~~~~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gk 145 (314)
T PLN02587 68 KALGI--PREKYVVSTKCGRYGEGFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGK 145 (314)
T ss_pred HhCCC--CcceEEEEeccccCCCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCC
Confidence 87542 379999999997532 3568999999999999999999999999999974 235689999999999999
Q ss_pred cceEeecCCcHHHHHHHHHHHHhcCCCeeeeeeccCcCcCCccccchhHHHHHhCCeEEEcccCccccccCCCCCCCCCC
Q 021569 192 VKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPT 271 (311)
Q Consensus 192 ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spL~~G~Ltg~~~~~~~~~ 271 (311)
||+||+|||++++++.+........+.+..+|+.||++++..+ +++++|+++||++++|+||++|+|++++.+...+
T Consensus 146 ir~iGvSn~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~ll~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~- 222 (314)
T PLN02587 146 VRFIGITGLPLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSLE--DLLPYLKSKGVGVISASPLAMGLLTENGPPEWHP- 222 (314)
T ss_pred eEEEEecCCCHHHHHHHHHhhhcCCCCeEEeccccCcchhhHH--HHHHHHHHcCceEEEechhhccccCCCCCCCCCC-
Confidence 9999999999999988776433222456667899999876433 6999999999999999999999999875321100
Q ss_pred CCCCCCCchHhHhhHHHHHHHHHHHHHhcCCCcchhccC
Q 021569 272 GPRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQFSVD 310 (311)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~~qvaL~ 310 (311)
. .+...++++.++++|+++|+|++|+||+
T Consensus 223 -------~---~~~~~~~~~~l~~~a~~~~~s~aq~al~ 251 (314)
T PLN02587 223 -------A---PPELKSACAAAATHCKEKGKNISKLALQ 251 (314)
T ss_pred -------C---CHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 0 1234566778999999999999999986
No 8
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=3.2e-52 Score=373.45 Aligned_cols=218 Identities=28% Similarity=0.437 Sum_probs=190.2
Q ss_pred eeecCCCCcccccceecccccCCCCCCCCCcCchhhHHHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHH
Q 021569 38 KVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI 117 (311)
Q Consensus 38 ~~~lg~sg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al 117 (311)
+.+|++ |.+||.||||||+.. .+++.+.++.|++.||||||||..|+| |+.+|++|
T Consensus 6 ~~~Ln~-G~~mP~iGlGTw~~~--------------~~~~~~aV~~Al~~GYRHIDtA~~Y~N---------E~evG~ai 61 (300)
T KOG1577|consen 6 TVKLNN-GFKMPIIGLGTWQSP--------------PGQVAEAVKAAIKAGYRHIDTAHVYGN---------EKEVGEAI 61 (300)
T ss_pred eEeccC-CCccceeeeEecccC--------------hhhHHHHHHHHHHhCcceeechhhhCC---------hHHHHHHH
Confidence 678876 999999999999732 378899999999999999999999999 99999999
Q ss_pred Hhcc--CCCCCccEEEEeeccCCCCCCCHHHHHHHHHHHHHhhCCCCcceEEecCCCCC-----------------ChHH
Q 021569 118 KERK--QRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW-----------------GNEG 178 (311)
Q Consensus 118 ~~~~--~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~-----------------~~~~ 178 (311)
++.- ...+|+++||+||+|+ ..+.++.++.++++||++||+||||||++|||-.. +..+
T Consensus 62 k~~i~~~~v~RediFiTSKlw~--~~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~ 139 (300)
T KOG1577|consen 62 KELLAEGGVKREDIFITSKLWP--TDHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIE 139 (300)
T ss_pred HHHhhhCCcchhhheeeeccCc--cccChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHH
Confidence 9663 2237999999999975 34789999999999999999999999999998653 2468
Q ss_pred HHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeeeeeccCcCcCCccccchhHHHHHhCCeEEEcccCccc
Q 021569 179 FIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQG 258 (311)
Q Consensus 179 ~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spL~~G 258 (311)
+|++||+++++|+||+||||||+..+|++++..+ .++|++||+||||+.++.+ ++++|+++||.|.|||||+++
T Consensus 140 tW~amE~~~~~Gl~rsIGVSNF~~~~le~ll~~~---ki~P~vnQvE~HP~~~Q~~---L~~fCk~~~I~v~AYSpLg~~ 213 (300)
T KOG1577|consen 140 TWKAMEKLVDEGLVRSIGVSNFNIKQLEELLNLA---KIKPAVNQVECHPYLQQKK---LVEFCKSKGIVVTAYSPLGSP 213 (300)
T ss_pred HHHHHHHHHHcCCceEeeeecCCHHHHHHHHhcC---CCCCccceeeccCCcChHH---HHHHHhhCCcEEEEecCCCCC
Confidence 9999999999999999999999999999998775 4899999999999998754 999999999999999999985
Q ss_pred cccCCCCCCCCCCCCCCCCCchHhHhhHHHHHHHHHHHHHhcCCCcchhccC
Q 021569 259 ALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQFSVD 310 (311)
Q Consensus 259 ~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~~qvaL~ 310 (311)
-= ....+.++ .+.+||+|||+||+||+||
T Consensus 214 ~~-------------~~~ll~~~----------~l~~iA~K~~kt~aQIlLr 242 (300)
T KOG1577|consen 214 GR-------------GSDLLEDP----------VLKEIAKKYNKTPAQILLR 242 (300)
T ss_pred CC-------------ccccccCH----------HHHHHHHHhCCCHHHHHHH
Confidence 21 00223332 7999999999999999986
No 9
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=6e-48 Score=352.71 Aligned_cols=237 Identities=42% Similarity=0.686 Sum_probs=204.6
Q ss_pred eeecCCCCcccccceecccccCCCCCCCCCcCchhhHHHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHH
Q 021569 38 KVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI 117 (311)
Q Consensus 38 ~~~lg~sg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al 117 (311)
+++||+||++||+||||||.++.. | .+.+++.++|+.|++.|||+||||+.||+|.+ |+.+|++|
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~--~-------~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~s------E~~lG~al 65 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGG--Y-------VDEEEAAAAVRAALDAGINFIDTADVYGDGES------EELLGEAL 65 (285)
T ss_pred CcccCCCCceecCcceeccccCCC--C-------CCHHHHHHHHHHHHHcCCCeEECccccCCCCC------HHHHHHHH
Confidence 578999999999999999998754 1 24588999999999999999999999999988 99999999
Q ss_pred HhccCCCCCccEEEEeeccCCC---CCCCHHHHHHHHHHHHHhhCCCCcceEEecCCCC-CC-hHHHHHHHHHHHHcCcc
Q 021569 118 KERKQRDPEVEVTVATKFAALP---WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WG-NEGFIDGLGDAVEQGLV 192 (311)
Q Consensus 118 ~~~~~~~~R~~~~I~tK~~~~~---~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~-~~-~~~~~~~l~~l~~~G~i 192 (311)
+..+ +|+++||+||++... .+.+++.+++++++||++|++||||+|+||||+. .. ..++|++|++++++|+|
T Consensus 66 ~~~~---~R~~~~i~tK~~~~~~~~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~i 142 (285)
T cd06660 66 KERG---PREEVFIATKVGPRPGDGRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKI 142 (285)
T ss_pred hccC---CcCcEEEEeeecCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCc
Confidence 9875 379999999998642 1368999999999999999999999999999987 33 78999999999999999
Q ss_pred ceEeecCCcHHHHHHHHHHHHhcCCCeeeeeeccCcCcCCccccchhHHHHHhCCeEEEcccCccccccCCCCCCCCCCC
Q 021569 193 KAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTG 272 (311)
Q Consensus 193 r~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spL~~G~Ltg~~~~~~~~~~ 272 (311)
|+||||||+++.++++++.+ ..+|+++|++||++++..+. +++++|+++||++++|+||++|.|++++.....+
T Consensus 143 r~iGvS~~~~~~l~~~~~~~---~~~~~~~q~~~n~~~~~~~~-~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~~~~~-- 216 (285)
T cd06660 143 RAIGVSNFSAEQLEEALAAA---GVPPAVNQVEYNLLDRQAEE-ELLPYCREHGIGVIAYSPLAGGLLTGKYLPGAPP-- 216 (285)
T ss_pred cEEEeeCCCHHHHHHHHHhh---CCCceEEecccCcccCchHH-HHHHHHHHcCcEEEEeccccCceecCCCCCCCCC--
Confidence 99999999999999987654 36899999999999998654 5999999999999999999999998765543211
Q ss_pred CCCCCCchHhHhhHHHHHHHHHHHHHhcCCCcchhccC
Q 021569 273 PRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQFSVD 310 (311)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~~qvaL~ 310 (311)
.. ......+..+++++++|++|+||+
T Consensus 217 ------~~------~~~~~~~~~~~~~~~~s~~q~al~ 242 (285)
T cd06660 217 ------PE------GDLLEALKEIAEKHGVTPAQVALR 242 (285)
T ss_pred ------Ch------hhHHHHHHHHHHHhCCCHHHHHHH
Confidence 00 013457899999999999999985
No 10
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=7.4e-48 Score=349.53 Aligned_cols=204 Identities=27% Similarity=0.442 Sum_probs=178.6
Q ss_pred ccccceecccccCCCCCCCCCcCchhhHHHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCCCC
Q 021569 47 KVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPE 126 (311)
Q Consensus 47 ~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R 126 (311)
+||.||||||+++. +++.++|+.|++.||||||||+.||+ |+.||++|+..+. +|
T Consensus 2 ~vs~lglGt~~~~~--------------~~~~~~i~~A~~~Gi~~~DTA~~Yg~---------E~~lG~al~~~~~--~R 56 (267)
T PRK11172 2 SIPAFGLGTFRLKD--------------QVVIDSVKTALELGYRAIDTAQIYDN---------EAAVGQAIAESGV--PR 56 (267)
T ss_pred CCCCEeeEccccCh--------------HHHHHHHHHHHHcCCCEEEccchhCC---------HHHHHHHHHHcCC--Ch
Confidence 69999999998642 57889999999999999999999996 9999999986432 37
Q ss_pred ccEEEEeeccCCCCCCCHHHHHHHHHHHHHhhCCCCcceEEecCCCC---CChHHHHHHHHHHHHcCccceEeecCCcHH
Q 021569 127 VEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI---WGNEGFIDGLGDAVEQGLVKAVGVSNYSEK 203 (311)
Q Consensus 127 ~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~---~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~ 203 (311)
+++||+||++. ...+++.+++++++||+|||+||||+|++|||++ .+.+++|++|++|+++||||+||||||+.+
T Consensus 57 ~~v~i~TK~~~--~~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~ 134 (267)
T PRK11172 57 DELFITTKIWI--DNLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIGISNFTIA 134 (267)
T ss_pred hHeEEEEEeCC--CCCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEccCCHH
Confidence 99999999853 3467999999999999999999999999999975 467899999999999999999999999999
Q ss_pred HHHHHHHHHHhcCC-CeeeeeeccCcCcCCccccchhHHHHHhCCeEEEcccCccccccCCCCCCCCCCCCCCCCCchHh
Q 021569 204 RLRNAYEKLKKRGI-PLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEY 282 (311)
Q Consensus 204 ~l~~~~~~~~~~g~-~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spL~~G~Ltg~~~~~~~~~~~~~~~~~~~~ 282 (311)
+++++++.+ +. +|+++|++||++++. .+++++|+++||++++|+||++|.+.. .
T Consensus 135 ~l~~~~~~~---~~~~~~~~Q~~~~~~~~~---~~ll~~~~~~gi~v~a~spl~~G~~~~-----------------~-- 189 (267)
T PRK11172 135 LMKQAIAAV---GAENIATNQIELSPYLQN---RKVVAFAKEHGIHVTSYMTLAYGKVLK-----------------D-- 189 (267)
T ss_pred HHHHHHHhc---CCCCCeEEeeecCCCCCc---HHHHHHHHHCCCEEEEECCCCCCcccC-----------------C--
Confidence 999987642 33 689999999999875 269999999999999999999985421 1
Q ss_pred HhhHHHHHHHHHHHHHhcCCCcchhccC
Q 021569 283 LRNLQPLLNRIKELGENYSKTSTQFSVD 310 (311)
Q Consensus 283 ~~~~~~~~~~l~~iA~~~g~s~~qvaL~ 310 (311)
..|+++|+++|+|++|+||+
T Consensus 190 --------~~l~~~a~~~~~s~aqval~ 209 (267)
T PRK11172 190 --------PVIARIAAKHNATPAQVILA 209 (267)
T ss_pred --------HHHHHHHHHhCCCHHHHHHH
Confidence 15889999999999999985
No 11
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=1e-47 Score=352.53 Aligned_cols=233 Identities=19% Similarity=0.221 Sum_probs=187.2
Q ss_pred CcccccceecccccCCCCCCCCCcCchhhHHHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCC
Q 021569 45 DLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRD 124 (311)
Q Consensus 45 g~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~ 124 (311)
+++||+||||||+||+...|....+++++++++.++|+.|++.||||||||+.||. | |+++|++|+...
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~~~~~ea~~~l~~A~~~Gin~~DTA~~YG~--S------E~~lG~al~~~~--- 70 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGRTPEAEARDILNIAARAGLSVLDASGLFGR--A------ETVLGQLIPRPV--- 70 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCCCCHHHHHHHHHHHHHcCCCEEecchhhhh--H------HHHHhhhhccCC---
Confidence 57899999999999863111111123456799999999999999999999999974 4 999999997421
Q ss_pred CCccEEEEeeccCCCCCCCHHHHHHHHHHHHHhhCCCCcceEEecCCCC--CCh-HHHHHHHHHHHHcCccceEeecCCc
Q 021569 125 PEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGN-EGFIDGLGDAVEQGLVKAVGVSNYS 201 (311)
Q Consensus 125 ~R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~--~~~-~~~~~~l~~l~~~G~ir~iGvSn~~ 201 (311)
+++++|+||.. ..+++.+++++++||+|||+||||+|++|||++ .+. +++|++|++|+++||||+||||||+
T Consensus 71 -~~~~~i~tk~~----~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~ 145 (292)
T PRK14863 71 -PFRVTLSTVRA----DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHA 145 (292)
T ss_pred -ceEeecccccc----cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccC
Confidence 46799999852 357899999999999999999999999999976 233 6789999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCeeeeeeccCcCcCCccccchhHHHHHhCCeEEEcccCccccccCCCCCCCCCCCCCCCCCchH
Q 021569 202 EKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAE 281 (311)
Q Consensus 202 ~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spL~~G~Ltg~~~~~~~~~~~~~~~~~~~ 281 (311)
++++.++... .+|+++|++||+++++.+..+++++|+++||++++|+||++|+|++.... .+ ..+
T Consensus 146 ~~~~~~~~~~-----~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~~~~~~--~~-----~~~--- 210 (292)
T PRK14863 146 SDDPVGVARR-----FKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLFLPPDR--VP-----AQL--- 210 (292)
T ss_pred HHHHHHHHhc-----CCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCccccCCccc--Cc-----cch---
Confidence 9998876432 58999999999999976544699999999999999999999999753110 00 011
Q ss_pred hHhhHHHHHHHHHHHHHhcCCCcchhccC
Q 021569 282 YLRNLQPLLNRIKELGENYSKTSTQFSVD 310 (311)
Q Consensus 282 ~~~~~~~~~~~l~~iA~~~g~s~~qvaL~ 310 (311)
......+..+.+++.++++|++|+||+
T Consensus 211 --~~~~~~~~~~~~~~~~~~~s~aqlala 237 (292)
T PRK14863 211 --KGASGRLSRVRRMIAEGRSDPLQAALG 237 (292)
T ss_pred --hhhhHHHHHHHHHHHHcCCCHHHHHHH
Confidence 122344567788888899999999985
No 12
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=2.3e-48 Score=335.41 Aligned_cols=236 Identities=22% Similarity=0.418 Sum_probs=208.4
Q ss_pred cceeecCCCCcccccceecccccCCCCCCCCCcCchhhHHHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHH
Q 021569 36 EDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGR 115 (311)
Q Consensus 36 m~~~~lg~sg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~ 115 (311)
|++++|+..|+++|+|.+|+|++.. |+ ++..+....|+.++|.||++||-|+.||++.+ |+++|.
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d---~~------~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~c------E~~fg~ 65 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLND---WN------MSARELLSFIETALELGITTFDHADIYGGYQC------EALFGE 65 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhh---cc------CCHHHHHHHHHHHHHcCcccchhhhhcCCccH------HHHHHH
Confidence 7889999889999999999999864 33 34478899999999999999999999999988 999999
Q ss_pred HHHhccCCCCCccEEEEeeccCC----------CCCCCHHHHHHHHHHHHHhhCCCCcceEEecCCCC-CChHHHHHHHH
Q 021569 116 FIKERKQRDPEVEVTVATKFAAL----------PWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLG 184 (311)
Q Consensus 116 al~~~~~~~~R~~~~I~tK~~~~----------~~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~-~~~~~~~~~l~ 184 (311)
+|+-.+.- |+++.|.||+|.. .++.+.++|..++|+||++|+|||+|+++||+||+ .+.+|+.+++.
T Consensus 66 aL~l~p~l--RekieivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd~eeVAeAf~ 143 (298)
T COG4989 66 ALKLAPGL--REKIEIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMDAEEVAEAFT 143 (298)
T ss_pred HHhcChhh--hhheEeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCCHHHHHHHHH
Confidence 99987754 8999999999852 25688999999999999999999999999999999 78999999999
Q ss_pred HHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeeeeeccCcCcCCccccchhHHHHHhCCeEEEcccCccccccCCC
Q 021569 185 DAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKY 264 (311)
Q Consensus 185 ~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spL~~G~Ltg~~ 264 (311)
.|+++||||++|||||++.|++-+.++.. .++++||++.|+++.....++.+++|+.+.|.++|||||++|-+
T Consensus 144 ~L~~sGKVr~fGVSNf~p~Q~~LL~s~l~---~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~---- 216 (298)
T COG4989 144 HLHKSGKVRHFGVSNFNPAQFELLQSRLP---FTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGL---- 216 (298)
T ss_pred HHHhcCCeeeeecCCCCHHHHHHHHHhcc---chhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCcc----
Confidence 99999999999999999999999877643 35889999999999988888999999999999999999999832
Q ss_pred CCCCCCCCCCCCCCchHhHhhHHHHHHHHHHHHHhcC-CCcchhccC
Q 021569 265 TPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYS-KTSTQFSVD 310 (311)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g-~s~~qvaL~ 310 (311)
|.. .++.+++.++|..||.++| +|..+|+++
T Consensus 217 -------------F~g--~~~~q~l~~~l~~ia~e~ga~s~~~VaiA 248 (298)
T COG4989 217 -------------FLG--DDKFQRLRKVLDRIAEEYGAVSITAVAIA 248 (298)
T ss_pred -------------ccC--CcchHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 221 1234556668999999999 799999874
No 13
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=4.4e-47 Score=348.33 Aligned_cols=221 Identities=22% Similarity=0.333 Sum_probs=186.0
Q ss_pred eecCCCCcccccceecccccCCCCCCCCCcCchhhHHHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHHH
Q 021569 39 VKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIK 118 (311)
Q Consensus 39 ~~lg~sg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~ 118 (311)
+.|+ |++||+||||||+||+...|+. ..+++++.++|+.|+++||||||||+.||+|.+ |++||++|+
T Consensus 10 ~~l~--g~~vs~iglG~~~lg~~~~~g~----~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~s------E~~lg~~l~ 77 (290)
T PRK10376 10 FTLG--GRSVNRLGYGAMQLAGPGVFGP----PKDRDAAIAVLREAVALGVNHIDTSDFYGPHVT------NQLIREALH 77 (290)
T ss_pred eecC--CeeecccceeccccCCCCcCCC----CCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcH------HHHHHHHHh
Confidence 4564 8999999999999986533442 124578999999999999999999999999887 999999996
Q ss_pred hccCCCCCccEEEEeeccCC-------CCCCCHHHHHHHHHHHHHhhCCCCcceEEecCCC------CCChHHHHHHHHH
Q 021569 119 ERKQRDPEVEVTVATKFAAL-------PWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAG------IWGNEGFIDGLGD 185 (311)
Q Consensus 119 ~~~~~~~R~~~~I~tK~~~~-------~~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~------~~~~~~~~~~l~~ 185 (311)
.. |+++||+||++.. +...+++.+++++++||+||+|||||+|++||++ ..+.+++|++|++
T Consensus 78 ~~-----R~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~ 152 (290)
T PRK10376 78 PY-----PDDLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAE 152 (290)
T ss_pred cC-----CCeEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHH
Confidence 42 6899999998642 2346799999999999999999999999988742 2347899999999
Q ss_pred HHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeeeeeccCcCcCCccccchhHHHHHhCCeEEEcccCccccccCCCC
Q 021569 186 AVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYT 265 (311)
Q Consensus 186 l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spL~~G~Ltg~~~ 265 (311)
|+++||||+||||||++++++++.+. .++.++|++||++++..+ +++++|+++||++++|+||+++.
T Consensus 153 l~~~Gkir~iGvSn~~~~~l~~~~~~-----~~~~~~q~~~~~~~~~~~--~~~~~~~~~gi~v~a~~pL~g~~------ 219 (290)
T PRK10376 153 LQRQGLVRHIGLSNVTPTQVAEARKI-----AEIVCVQNHYNLAHRADD--ALIDALARDGIAYVPFFPLGGFT------ 219 (290)
T ss_pred HHHCCceeEEEecCCCHHHHHHHHhh-----CCeEEEecccCCCcCChH--HHHHHHHHcCCEEEEeecCCCCC------
Confidence 99999999999999999999998654 468999999999997643 69999999999999999997320
Q ss_pred CCCCCCCCCCCCCchHhHhhHHHHHHHHHHHHHhcCCCcchhccC
Q 021569 266 PQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQFSVD 310 (311)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~~qvaL~ 310 (311)
.+. .+.++++|+++|+|++|+||+
T Consensus 220 -----------~~~----------~~~l~~ia~~~~~t~aq~al~ 243 (290)
T PRK10376 220 -----------PLQ----------SSTLSDVAASLGATPMQVALA 243 (290)
T ss_pred -----------hhh----------hHHHHHHHHHhCCCHHHHHHH
Confidence 011 137899999999999999985
No 14
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=4.2e-47 Score=346.80 Aligned_cols=233 Identities=34% Similarity=0.579 Sum_probs=189.2
Q ss_pred cceecccccCCCCCCCCCcCchhhHHHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCCCCccE
Q 021569 50 KLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEV 129 (311)
Q Consensus 50 ~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~ 129 (311)
+||||||.+|+. ..+.+++.++|+.|++.|||+||||+.||+|.+ |++||++|+... .+|+++
T Consensus 1 ~l~lG~~~~~~~---------~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~s------E~~lg~~l~~~~--~~r~~~ 63 (283)
T PF00248_consen 1 PLGLGTWRLGGE---------RVSEEEAEAILRRALEAGINFFDTADSYGNGRS------ERILGRALRKSR--VPRDDI 63 (283)
T ss_dssp SBEEECTTBTTT---------TSTHHHHHHHHHHHHHTT--EEEECGGGGGGTH------HHHHHHHHHHTS--STGGGS
T ss_pred CEEEEccccCCC---------CCCHHHHHHHHHHHHHcCCCeeccccccccccc------cccccccccccc--cccccc
Confidence 589999998752 256799999999999999999999999999887 999999999933 248999
Q ss_pred EEEeeccC---CCCCCCHHHHHHHHHHHHHhhCCCCcceEEecCCCC-CC-hHHHHHHHHHHHHcCccceEeecCCcHHH
Q 021569 130 TVATKFAA---LPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WG-NEGFIDGLGDAVEQGLVKAVGVSNYSEKR 204 (311)
Q Consensus 130 ~I~tK~~~---~~~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~-~~-~~~~~~~l~~l~~~G~ir~iGvSn~~~~~ 204 (311)
+|+||+.. .....+++.+++++++||++||+||||+|++|||+. .. .+++|++|++|+++|+||+||||||++++
T Consensus 64 ~i~tK~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~ 143 (283)
T PF00248_consen 64 FISTKVYGDGKPEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQ 143 (283)
T ss_dssp EEEEEEESSSSTGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHH
T ss_pred cccccccccccccccccccccccccccccccccccchhccccccccccccccchhhhhhhhccccccccccccccccccc
Confidence 99999921 124588999999999999999999999999999987 55 89999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCeeeeeeccCcCcCCccccchhHHHHHhCCeEEEcccCccccccCCCCCCCCCCCCCCCCCchHhHh
Q 021569 205 LRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLR 284 (311)
Q Consensus 205 l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spL~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~ 284 (311)
++++ .+...++|+++|++||++++... .+++++|+++||++++|+||++|+|++++.....+........
T Consensus 144 l~~~---~~~~~~~~~~~q~~~n~~~~~~~-~~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~~~~~~~~~~~~~------ 213 (283)
T PF00248_consen 144 LEAA---LKIGSIPPDVVQINYNLLNRREE-EGLLEFCREHGIGVIAYSPLAGGLLTGKYKSPPPPPSRASLRD------ 213 (283)
T ss_dssp HHHH---HTCTSS-ESEEEEE-BTTBHBGG-HHHHHHHHHTT-EEEEESTTGGGCGGTTTTTTTTSTTTSGSST------
T ss_pred cccc---ccccccccccccccccccccccc-ccccccccccccccccccccccCccccccccCCCcccccccch------
Confidence 9988 23334689999999999955443 3799999999999999999999999998876543322211100
Q ss_pred hHHHHHHHHHHHHHhcCCCcchhccC
Q 021569 285 NLQPLLNRIKELGENYSKTSTQFSVD 310 (311)
Q Consensus 285 ~~~~~~~~l~~iA~~~g~s~~qvaL~ 310 (311)
.......+.++++++|+|++|+||+
T Consensus 214 -~~~~~~~l~~~a~~~g~s~~q~al~ 238 (283)
T PF00248_consen 214 -AQELADALRELAEEHGVSPAQLALR 238 (283)
T ss_dssp -HGGGHHHHHHHHHHHTSSHHHHHHH
T ss_pred -hhhhhhhhhhhhhhcccccchhhhh
Confidence 2344458999999999999999986
No 15
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=5.9e-46 Score=338.33 Aligned_cols=212 Identities=25% Similarity=0.422 Sum_probs=182.6
Q ss_pred eeecCCCCcccccceecccccCCCCCCCCCcCchhhHHHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHH
Q 021569 38 KVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI 117 (311)
Q Consensus 38 ~~~lg~sg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al 117 (311)
++.|. +|+.||+||||||+++ .+++.++|++|+++||||||||+.||+ |+.+|++|
T Consensus 6 ~~~l~-~g~~v~~lglG~~~~~--------------~~~~~~~l~~A~~~Gi~~~DTA~~Yg~---------E~~lG~al 61 (275)
T PRK11565 6 VIKLQ-DGNVMPQLGLGVWQAS--------------NEEVITAIHKALEVGYRSIDTAAIYKN---------EEGVGKAL 61 (275)
T ss_pred eEEcC-CCCccCCcceECccCC--------------HHHHHHHHHHHHHhCCCEEEchhhhCC---------HHHHHHHH
Confidence 46674 5999999999999753 267899999999999999999999986 99999999
Q ss_pred HhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHHHHHHhhCCCCcceEEecCCCCC--ChHHHHHHHHHHHHcCccceE
Q 021569 118 KERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW--GNEGFIDGLGDAVEQGLVKAV 195 (311)
Q Consensus 118 ~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~--~~~~~~~~l~~l~~~G~ir~i 195 (311)
+..+. +|++++|+||++ ..+++.+++++++||+||++||||+|++|||++. +..++|++|++|+++|+||+|
T Consensus 62 ~~~~~--~R~~~~i~tK~~----~~~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~i 135 (275)
T PRK11565 62 KEASV--AREELFITTKLW----NDDHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSI 135 (275)
T ss_pred HHcCC--CHHHEEEEEEec----CcchHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeEE
Confidence 87542 379999999985 3467899999999999999999999999999862 467999999999999999999
Q ss_pred eecCCcHHHHHHHHHHHHhcCCCeeeeeeccCcCcCCccccchhHHHHHhCCeEEEcccCccccccCCCCCCCCCCCCCC
Q 021569 196 GVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRG 275 (311)
Q Consensus 196 GvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spL~~G~Ltg~~~~~~~~~~~~~ 275 (311)
|||||+++++++++. ..+++|.++|++||++.+.. +++++|+++||.+++|+||++|.-
T Consensus 136 GvSn~~~~~l~~~~~---~~~v~~~~~Q~~~~~~~~~~---~~~~~~~~~~i~~~a~spl~~G~~--------------- 194 (275)
T PRK11565 136 GVCNFQIHHLQRLID---ETGVTPVINQIELHPLMQQR---QLHAWNATHKIQTESWSPLAQGGK--------------- 194 (275)
T ss_pred eeccCCHHHHHHHHH---hCCCCceeeeeecCCccchH---HHHHHHHHCCCEEEEEccCCCCCc---------------
Confidence 999999999999854 34577899999999999752 599999999999999999997631
Q ss_pred CCCchHhHhhHHHHHHHHHHHHHhcCCCcchhccC
Q 021569 276 RIYTAEYLRNLQPLLNRIKELGENYSKTSTQFSVD 310 (311)
Q Consensus 276 ~~~~~~~~~~~~~~~~~l~~iA~~~g~s~~qvaL~ 310 (311)
..+.. +.|+++|+++|+|++|+|||
T Consensus 195 ~~~~~----------~~l~~ia~~~g~s~aq~aL~ 219 (275)
T PRK11565 195 GVFDQ----------KVIRDLADKYGKTPAQIVIR 219 (275)
T ss_pred ccccC----------HHHHHHHHHhCCCHHHHHHH
Confidence 01111 26899999999999999986
No 16
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=5.6e-40 Score=285.42 Aligned_cols=242 Identities=22% Similarity=0.308 Sum_probs=199.6
Q ss_pred ccceeecCCCCcccccceecccccCCCCCCCCCcCchhhHHHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHH
Q 021569 35 AEDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLG 114 (311)
Q Consensus 35 ~m~~~~lg~sg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG 114 (311)
.|.||.||+||++||+||||...++.. +.+.++++....|..|+..|||+|||++.||.++| |+.+|
T Consensus 21 rmeyR~lg~tgl~VSk~~fGga~L~~~-------fgd~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~s------e~~lg 87 (342)
T KOG1576|consen 21 RMEYRQLGSTGLRVSKLGFGGAALGQL-------FGDEDEEEGILTVIEAFKSGINYIDTSPYYGQSRS------EEGLG 87 (342)
T ss_pred HHHHhhcCCCcceeeeeeecchhhhhh-------cCCcchhhhHHHHHHHHHccccceecCcccCcchh------HHHHH
Confidence 599999999999999999999998865 44556778788788899999999999999999998 99999
Q ss_pred HHHHhccCCCCCccEEEEeeccCCC------CCCCHHHHHHHHHHHHHhhCCCCcceEEecCCCCCC-----hHHHHHHH
Q 021569 115 RFIKERKQRDPEVEVTVATKFAALP------WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGL 183 (311)
Q Consensus 115 ~al~~~~~~~~R~~~~I~tK~~~~~------~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~-----~~~~~~~l 183 (311)
.++++.+ |+.+||+||++... ++++++.+++++++||+||++||||++++|..+..| ..|++.+|
T Consensus 88 ~al~~vP----R~aYyIaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~L 163 (342)
T KOG1576|consen 88 LALKDVP----REAYYIATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPAL 163 (342)
T ss_pred HHHhhCC----hhheeeeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHH
Confidence 9999875 89999999998631 578999999999999999999999999999887632 57999999
Q ss_pred HHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeee--eeeccCcCcCCccccchhHHHHHhCCeEEEcccCcccccc
Q 021569 184 GDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS--NQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALT 261 (311)
Q Consensus 184 ~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~--~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spL~~G~Lt 261 (311)
++||++||||+||||.++.+-+.++++. .-...++ .-.+|++.+.... ..+++.++.|++|+.-++|+.|+|+
T Consensus 164 e~lk~~Gk~RfiGitgypldvl~~~ae~---~~G~~dvvlsY~ry~l~d~tLl--~~~~~~~sk~vgVi~AsalsmgLLt 238 (342)
T KOG1576|consen 164 EELKQEGKIRFIGITGYPLDVLTECAER---GKGRLDVVLSYCRYTLNDNTLL--RYLKRLKSKGVGVINASALSMGLLT 238 (342)
T ss_pred HHHHhcCceeEeeecccchHHHHHHHhc---CCCceeeehhhhhhccccHHHH--HHHHHHHhcCceEEehhhHHHHHhh
Confidence 9999999999999999999999988643 1123444 4577777665443 4788899999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCchHhHhhHHHHHHHHHHHHHhcCCCcchhcc
Q 021569 262 GKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQFSV 309 (311)
Q Consensus 262 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~~qvaL 309 (311)
.+-.+..+|. +++ ..+...+-.++|++.|+..+.+|+
T Consensus 239 ~~gp~~wHPa-------S~E----lk~~a~~aa~~Cq~rnv~l~kLA~ 275 (342)
T KOG1576|consen 239 NQGPPPWHPA-------SDE----LKEAAKAAAEYCQSRNVELGKLAM 275 (342)
T ss_pred cCCCCCCCCC-------CHH----HHHHHHHHHHHHHHcCccHHHHHH
Confidence 7644444332 222 333444567888888998888876
No 17
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=3.6e-37 Score=279.51 Aligned_cols=228 Identities=21% Similarity=0.307 Sum_probs=188.2
Q ss_pred cceeecCCCCcccccceecccccCCCCCCCCCcCchhhHHHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHH
Q 021569 36 EDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGR 115 (311)
Q Consensus 36 m~~~~lg~sg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~ 115 (311)
|.||+++++|.++|.||||||++... |. +..|++.+.++|++|+|.|||+||||..|..|.| |..||+
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~--~~----~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~s------E~~lgk 68 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLK--EQ----GSIDEENANETIDYAIEHGINYIDTAWPYHGGES------EEFLGK 68 (391)
T ss_pred CchhhcCCCCcccceeccceeecccc--cC----CCccHHHHHHHHHHHHHcCCceEeecccccCCCc------hHHHHH
Confidence 78999999999999999999998764 22 2346789999999999999999999999988877 999999
Q ss_pred HHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHHHHHHhhCCCCcceEEecCCCCCC-----hHHHHHHHHHHHHcC
Q 021569 116 FIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGLGDAVEQG 190 (311)
Q Consensus 116 al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~-----~~~~~~~l~~l~~~G 190 (311)
+|+... |++|.++||+..++ --+++.+++-++++|++|++||+|+|+||..+... ..+.++.+++++++|
T Consensus 69 aL~~~~----Rekv~LaTKlp~~~-~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~e~~~k~~~~g~~df~~kak~eG 143 (391)
T COG1453 69 ALKDGY----REKVKLATKLPSWP-VKDREDMERIFNEQLEKLGTDYIDYYLIHGLNTETWEKIERLGVFDFLEKAKAEG 143 (391)
T ss_pred Hhhhcc----cceEEEEeecCCcc-ccCHHHHHHHHHHHHHHhCCchhhhhhhccccHHHHHHHHccChHHHHHHHHhcC
Confidence 999875 89999999996532 35789999999999999999999999999876411 123688999999999
Q ss_pred ccceEeecCC-cHHHHHHHHHHHHhcCCCeeeeeeccCcCcCCccc-cchhHHHHHhCCeEEEcccCccccccCCCCCCC
Q 021569 191 LVKAVGVSNY-SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE-NGVKAACDELGITLIAYCPIAQGALTGKYTPQN 268 (311)
Q Consensus 191 ~ir~iGvSn~-~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~~~-~~l~~~~~~~gi~v~a~spL~~G~Ltg~~~~~~ 268 (311)
+||++|+|.| +.+.+.+++.. .+++.+|++||.++..... .+.+++|.++|++|+..+|+.+|-|..+
T Consensus 144 kIr~~GFSfHgs~e~~~~iv~a-----~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~~----- 213 (391)
T COG1453 144 KIRNAGFSFHGSTEVFKEIVDA-----YPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYN----- 213 (391)
T ss_pred cEEEeeecCCCCHHHHHHHHhc-----CCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcccC-----
Confidence 9999999999 55667777654 5799999999999875431 1589999999999999999999976532
Q ss_pred CCCCCCCCCCchHhHhhHHHHHHHHHHHHHhcC--CCcchhccC
Q 021569 269 PPTGPRGRIYTAEYLRNLQPLLNRIKELGENYS--KTSTQFSVD 310 (311)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g--~s~~qvaL~ 310 (311)
.|. ++.+|+++++ .||+..++|
T Consensus 214 ----------vP~----------~~~~l~~~~~~~~sP~~wa~R 237 (391)
T COG1453 214 ----------VPE----------KLEELCRPASPKRSPAEWALR 237 (391)
T ss_pred ----------CCH----------HHHHHHHhcCCCCCcHHHHHH
Confidence 111 5677777765 466666654
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=98.23 E-value=2.2e-06 Score=74.64 Aligned_cols=72 Identities=24% Similarity=0.333 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeeeeeccCcCcCCccccchhHHHHHhCCeEEEcc
Q 021569 177 EGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYC 253 (311)
Q Consensus 177 ~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~s 253 (311)
.+.|..||+++.+|+|..||+|.|+..+|+++...+. +.|.++|++..-.+.-+. +|..+|..|+|.+..++
T Consensus 156 kplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saq---VvP~snqVnL~~cCvvPp--dLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 156 KPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQ---VVPESNQVNLGQCCVVPP--DLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhc---cccccceeeccccccCCH--HHHHHhhhcceeeeecC
Confidence 4689999999999999999999999999999988754 789999999998887665 69999999999998775
No 19
>PRK08392 hypothetical protein; Provisional
Probab=92.31 E-value=7.1 Score=34.01 Aligned_cols=154 Identities=17% Similarity=0.259 Sum_probs=83.2
Q ss_pred HHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHHHHHH
Q 021569 77 AKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLF 156 (311)
Q Consensus 77 ~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~ 156 (311)
..+.++.|.+.|++.|=.+++...... ..-+..+-+ ++....+ .+=++++..=+...+ +. ....++.++
T Consensus 16 ~~e~v~~A~~~Gl~~i~iTdH~~~~~~---~~~~~y~~~-i~~l~~~-~~i~il~GiE~~~~~-----~~-~~~~~~~~~ 84 (215)
T PRK08392 16 VRDNIAEAERKGLRLVGISDHIHYFTP---SKFNAYINE-IRQWGEE-SEIVVLAGIEANITP-----NG-VDITDDFAK 84 (215)
T ss_pred HHHHHHHHHHcCCCEEEEccCCCccch---hhHHHHHHH-HHHHhhc-cCceEEEeEEeeecC-----Cc-chhHHHHHh
Confidence 567899999999999977766532100 000122211 1111111 011223222222111 11 223334444
Q ss_pred hhCCCCcceEEec-CCCCCChHHHHHHHHHHHHcCccceEeecC--------CcHHHHHHHHHHHHhcCCCeeeeeeccC
Q 021569 157 RLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGLVKAVGVSN--------YSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (311)
Q Consensus 157 rL~~d~iDl~~lH-~p~~~~~~~~~~~l~~l~~~G~ir~iGvSn--------~~~~~l~~~~~~~~~~g~~~~~~Q~~~~ 227 (311)
+ .||+ +.-+| |++....++..+.+.++.+.+.+.-+|=-. ...+.++++++.+.+.|..+.+|- .+
T Consensus 85 ~--~D~v-I~SvH~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g~~lEiNt-~~- 159 (215)
T PRK08392 85 K--LDYV-IASVHEWFGRPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYGKAFEISS-RY- 159 (215)
T ss_pred h--CCEE-EEEeecCcCCcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhCCEEEEeC-CC-
Confidence 3 4555 56668 543333456778888888898876665311 123577888888888886666653 11
Q ss_pred cCcCCccccchhHHHHHhCCeEE
Q 021569 228 LIYRKPEENGVKAACDELGITLI 250 (311)
Q Consensus 228 ~~~~~~~~~~l~~~~~~~gi~v~ 250 (311)
+.+.. .+++.|++.|+.++
T Consensus 160 ---~~p~~-~~l~~~~~~G~~~~ 178 (215)
T PRK08392 160 ---RVPDL-EFIRECIKRGIKLT 178 (215)
T ss_pred ---CCCCH-HHHHHHHHcCCEEE
Confidence 12222 58999999998764
No 20
>PRK13796 GTPase YqeH; Provisional
Probab=90.30 E-value=5.8 Score=37.66 Aligned_cols=144 Identities=19% Similarity=0.184 Sum_probs=90.9
Q ss_pred ccceecccccCCCCCCCCCcCchhhHHHHHHHHHHHHHcC---CCeEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCCC
Q 021569 49 TKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNG---ITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDP 125 (311)
Q Consensus 49 s~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~Al~~G---i~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~ 125 (311)
..+|-=|..+-. |+.......+.++..++++..-+.- +-.+|..+.-+.. ...+.+.+..
T Consensus 34 ~~~C~RC~~l~h---y~~~~~~~~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s~--------~~~L~~~~~~------ 96 (365)
T PRK13796 34 EVYCQRCFRLKH---YNEIQDVSLTDDDFLKLLNGIGDSDALVVNVVDIFDFNGSW--------IPGLHRFVGN------ 96 (365)
T ss_pred CeEchhhhhhhc---cCcccCCCCCHHHHHHHHHhhcccCcEEEEEEECccCCCch--------hHHHHHHhCC------
Confidence 345666665532 2221112233456667777766554 4467866644332 2333333321
Q ss_pred CccEEEEeeccCCCCCCCHHHHHHHHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccceEeecCCcHHHH
Q 021569 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRL 205 (311)
Q Consensus 126 R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l 205 (311)
+.-++|.+|.-..+.....+.+.+.++...+.+|....|++++..-.....+++++.+.++.+.+.+--+|.+|..-..|
T Consensus 97 kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTL 176 (365)
T PRK13796 97 NPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKGHGIDELLEAIEKYREGRDVYVVGVTNVGKSTL 176 (365)
T ss_pred CCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHH
Confidence 35788999985433233456666677777777787666888887665567888999988887778899999999988776
Q ss_pred HHHH
Q 021569 206 RNAY 209 (311)
Q Consensus 206 ~~~~ 209 (311)
-..+
T Consensus 177 iN~L 180 (365)
T PRK13796 177 INRI 180 (365)
T ss_pred HHHH
Confidence 6554
No 21
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=89.31 E-value=8.6 Score=35.52 Aligned_cols=156 Identities=13% Similarity=0.119 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHHH
Q 021569 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (311)
Q Consensus 74 ~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~~ 153 (311)
.++..+.++.+++.|++.|+.-- |.... .-.+.| +++++.. . ++-|.-+.. ..++.+... .+-+
T Consensus 135 ~~~~~~~~~~~~~~Gf~~iKik~--g~~~~----~d~~~v-~~lr~~~----g-~~~l~vD~n---~~~~~~~A~-~~~~ 198 (316)
T cd03319 135 PEAMAAAAKKAAKRGFPLLKIKL--GGDLE----DDIERI-RAIREAA----P-DARLRVDAN---QGWTPEEAV-ELLR 198 (316)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEe--CCChh----hHHHHH-HHHHHhC----C-CCeEEEeCC---CCcCHHHHH-HHHH
Confidence 46667778888899999998742 22100 002222 2333322 1 445666652 234554332 2333
Q ss_pred HHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccc-eEeecCCcHHHHHHHHHHHHhcCCCeeeeeeccCcCcCC
Q 021569 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 232 (311)
Q Consensus 154 SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~ 232 (311)
.|+.++ +.++-.|- +. +-++.+.+|.+.-.|. ..|=+-++.+.+.++++. ..++++|+....+---
T Consensus 199 ~l~~~~-----l~~iEeP~--~~-~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~-----~~~d~v~~~~~~~GGi 265 (316)
T cd03319 199 ELAELG-----VELIEQPV--PA-GDDDGLAYLRDKSPLPIMADESCFSAADAARLAGG-----GAYDGINIKLMKTGGL 265 (316)
T ss_pred HHHhcC-----CCEEECCC--CC-CCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhc-----CCCCEEEEeccccCCH
Confidence 444444 44444443 21 2367788888887776 556677888888887553 2366777765443211
Q ss_pred ccccchhHHHHHhCCeEEEcccCccc
Q 021569 233 PEENGVKAACDELGITLIAYCPIAQG 258 (311)
Q Consensus 233 ~~~~~l~~~~~~~gi~v~a~spL~~G 258 (311)
.+...+..+|+++||.++..+-+..+
T Consensus 266 ~~~~~~~~~a~~~gi~~~~~~~~~~~ 291 (316)
T cd03319 266 TEALRIADLARAAGLKVMVGCMVESS 291 (316)
T ss_pred HHHHHHHHHHHHcCCCEEEECchhhH
Confidence 11125799999999999986555443
No 22
>PRK08609 hypothetical protein; Provisional
Probab=87.28 E-value=26 Score=35.42 Aligned_cols=156 Identities=15% Similarity=0.167 Sum_probs=88.7
Q ss_pred HHHHHHHHHHcCCCeEEcCCCCCC-----CcCCCCCchHHHHHHH---HHhccCCCCCccEEEEeeccCCCCCCCHHHHH
Q 021569 77 AKAAFDTSLDNGITFFDTAEVYGS-----RASFGAINSETLLGRF---IKERKQRDPEVEVTVATKFAALPWRLGRQSVL 148 (311)
Q Consensus 77 ~~~~l~~Al~~Gi~~~DTA~~Yg~-----g~s~~~~~sE~~lG~a---l~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~ 148 (311)
..++++.|.+.|+..|=.++++.. |.+ ...+-.. ++......+.=+|++..=+... ++...
T Consensus 351 leemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~------~~~l~~~~~ei~~l~~~~~~i~Il~GiEv~i~-----~~g~~ 419 (570)
T PRK08609 351 IEEMVEACIAKGYEYMAITDHSQYLKVANGLT------EERLLEQAEEIKALNEKYPEIDILSGIEMDIL-----PDGSL 419 (570)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCccccCCCC------HHHHHHHHHHHHHHHHhcCCCeEEEEEEEeec-----CCcch
Confidence 445999999999999988888632 222 2222222 2221111101133333333221 12222
Q ss_pred HHHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccceEeecC------C--cHHHHHHHHHHHHhcCCCee
Q 021569 149 AALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSN------Y--SEKRLRNAYEKLKKRGIPLA 220 (311)
Q Consensus 149 ~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir~iGvSn------~--~~~~l~~~~~~~~~~g~~~~ 220 (311)
.-.+..|+. .||+ +.-+|++-..+.+++++.+.++.+.|.+.-||=-. + -...++++++.+.+.|.
T Consensus 420 d~~~~~L~~--~D~v-I~SvH~~~~~~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G~--- 493 (570)
T PRK08609 420 DYDDEVLAE--LDYV-IAAIHSSFSQSEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETNT--- 493 (570)
T ss_pred hhcHHHHHh--hCEE-EEEeecCCCCCHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhCC---
Confidence 223334544 4666 67778764455677888999999988877666332 1 13556777777776665
Q ss_pred eeeeccCcCcCCccccchhHHHHHhCCeEE
Q 021569 221 SNQVNYSLIYRKPEENGVKAACDELGITLI 250 (311)
Q Consensus 221 ~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~ 250 (311)
++|++-+++.... ...++..|.+.|+.++
T Consensus 494 ~lEINa~~~r~~~-~~~~~~~~~e~Gv~i~ 522 (570)
T PRK08609 494 ALELNANPNRLDL-SAEHLKKAQEAGVKLA 522 (570)
T ss_pred EEEEcCCccccCc-cHHHHHHHHHcCCEEE
Confidence 4455555443222 2358999999999764
No 23
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=87.01 E-value=6.7 Score=38.00 Aligned_cols=105 Identities=11% Similarity=0.051 Sum_probs=56.4
Q ss_pred HHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHHHHHHhhCC-----CCcceEEecCCCCCC-----hHHH
Q 021569 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL-----SSVELYQLHWAGIWG-----NEGF 179 (311)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~rL~~-----d~iDl~~lH~p~~~~-----~~~~ 179 (311)
|+.|-++|++...+.+.+=++|.|-+.. +-+-..++...++++. ..+.++.+|.|+... .+.+
T Consensus 66 ~~~L~~~i~~~~~~~~p~~I~v~~tC~~-------~liGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~g~~~~G~~~a 138 (428)
T cd01965 66 EDNLIEALKNLLSRYKPDVIGVLTTCLT-------ETIGDDVAGFIKEFRAEGPEPADFPVVYASTPSFKGSHETGYDNA 138 (428)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcch-------hhcCCCHHHHHHHHHhhccCCCCCeEEEeeCCCCCCcHHHHHHHH
Confidence 7777777776543322355777777643 2222223444444432 235677788776521 2334
Q ss_pred HHHHHHH-------HHcCccceEeecCCcHHHHHHHHHHHHhcCCCeee
Q 021569 180 IDGLGDA-------VEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (311)
Q Consensus 180 ~~~l~~l-------~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~ 221 (311)
+++|-+. ++.++|--||-++.+...+.++.+.++..|+++.+
T Consensus 139 ~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~ 187 (428)
T cd01965 139 VKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPII 187 (428)
T ss_pred HHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEE
Confidence 4444322 23466888887776444455555556667766544
No 24
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=86.86 E-value=8.2 Score=34.60 Aligned_cols=52 Identities=15% Similarity=0.061 Sum_probs=35.7
Q ss_pred chhHHHHHhCCeEEEcccCccccccCCCCCCCCCCCCCCCCCchHhHhhHHHHHHHHHHHHHhcCCCc
Q 021569 237 GVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTS 304 (311)
Q Consensus 237 ~l~~~~~~~gi~v~a~spL~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~ 304 (311)
..+++|+..|...+...|...|.. .-..+.++...+.++.|.++|+++|+..
T Consensus 94 ~~i~~a~~lGa~~i~~~~~~~~~~----------------~~~~~~~~~~~~~l~~l~~~a~~~gv~l 145 (275)
T PRK09856 94 LAMDMAKEMNAGYTLISAAHAGYL----------------TPPNVIWGRLAENLSELCEYAENIGMDL 145 (275)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCCC----------------CCHHHHHHHHHHHHHHHHHHHHHcCCEE
Confidence 367899999999987766433310 0123445666777888999999999754
No 25
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=86.81 E-value=17 Score=32.59 Aligned_cols=157 Identities=11% Similarity=0.084 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHHH
Q 021569 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (311)
Q Consensus 74 ~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~~ 153 (311)
.++..+.++.+++.|++.|-.-- |.. . ..-.+.+ +++++.- .+++.|.-... ..++.+...+-++
T Consensus 86 ~~~~~~~~~~~~~~G~~~~KiKv--g~~-~---~~d~~~v-~~vr~~~----g~~~~l~vDan---~~~~~~~a~~~~~- 150 (265)
T cd03315 86 PAEVAEEARRALEAGFRTFKLKV--GRD-P---ARDVAVV-AALREAV----GDDAELRVDAN---RGWTPKQAIRALR- 150 (265)
T ss_pred HHHHHHHHHHHHHCCCCEEEEec--CCC-H---HHHHHHH-HHHHHhc----CCCCEEEEeCC---CCcCHHHHHHHHH-
Confidence 35566677888899999887532 110 0 0001222 3344332 13455544442 2355554443332
Q ss_pred HHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccc-eEeecCCcHHHHHHHHHHHHhcCCCeeeeeeccCcCcCC
Q 021569 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 232 (311)
Q Consensus 154 SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~ 232 (311)
.|+.+ ++.++..|-+. +-++.+.+|++.-.+. ..|=+-++++++.++++. ..++++|+..+..---
T Consensus 151 ~l~~~-----~i~~iEeP~~~---~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~-----~~~d~v~~k~~~~GGi 217 (265)
T cd03315 151 ALEDL-----GLDYVEQPLPA---DDLEGRAALARATDTPIMADESAFTPHDAFRELAL-----GAADAVNIKTAKTGGL 217 (265)
T ss_pred HHHhc-----CCCEEECCCCc---ccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHh-----CCCCEEEEecccccCH
Confidence 33444 44555656431 2356777788776554 566677788888887543 2466777765543221
Q ss_pred ccccchhHHHHHhCCeEEEcccCccc
Q 021569 233 PEENGVKAACDELGITLIAYCPIAQG 258 (311)
Q Consensus 233 ~~~~~l~~~~~~~gi~v~a~spL~~G 258 (311)
.+-..+.+.|+++|+.++..+.+.++
T Consensus 218 ~~~~~~~~~A~~~gi~~~~~~~~~s~ 243 (265)
T cd03315 218 TKAQRVLAVAEALGLPVMVGSMIESG 243 (265)
T ss_pred HHHHHHHHHHHHcCCcEEecCccchH
Confidence 11225889999999999987665544
No 26
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=85.41 E-value=6.5 Score=37.69 Aligned_cols=78 Identities=14% Similarity=0.128 Sum_probs=47.7
Q ss_pred HHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHHHHHH
Q 021569 77 AKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLF 156 (311)
Q Consensus 77 ~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~ 156 (311)
...++++|++.|++++||+.++.. +..+....++ ..+.+..-+|..| ..+--....++++--+
T Consensus 81 ~~~i~ka~i~~gv~yvDts~~~~~---------~~~~~~~a~~-------Agit~v~~~G~dP-Gi~nv~a~~a~~~~~~ 143 (389)
T COG1748 81 DLTILKACIKTGVDYVDTSYYEEP---------PWKLDEEAKK-------AGITAVLGCGFDP-GITNVLAAYAAKELFD 143 (389)
T ss_pred hHHHHHHHHHhCCCEEEcccCCch---------hhhhhHHHHH-------cCeEEEcccCcCc-chHHHHHHHHHHHhhc
Confidence 347999999999999999987644 3233333332 3556666665433 2222222222222222
Q ss_pred hhCCCCcceEEecCCCC
Q 021569 157 RLGLSSVELYQLHWAGI 173 (311)
Q Consensus 157 rL~~d~iDl~~lH~p~~ 173 (311)
.+++||+|..+-|++
T Consensus 144 --~i~si~iy~g~~g~~ 158 (389)
T COG1748 144 --EIESIDIYVGGLGEH 158 (389)
T ss_pred --cccEEEEEEecCCCC
Confidence 589999999998875
No 27
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=84.88 E-value=15 Score=34.33 Aligned_cols=96 Identities=15% Similarity=0.110 Sum_probs=56.8
Q ss_pred HHHHhhCCCCcceEEecC-CCC--CChHHHHHHHHHHHHcCcc-ceEeecCC---cHHHHHHHHHHHHhcCCCeeeeeec
Q 021569 153 DSLFRLGLSSVELYQLHW-AGI--WGNEGFIDGLGDAVEQGLV-KAVGVSNY---SEKRLRNAYEKLKKRGIPLASNQVN 225 (311)
Q Consensus 153 ~SL~rL~~d~iDl~~lH~-p~~--~~~~~~~~~l~~l~~~G~i-r~iGvSn~---~~~~l~~~~~~~~~~g~~~~~~Q~~ 225 (311)
+.-+.+|.|+|||-+.-- |+. ...++....++...+.=.+ -.|..|.. +++.|+++++.++. -++-++-..
T Consensus 83 ~q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g--~~pLInSat 160 (319)
T PRK04452 83 KCVEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEG--ERCLLGSAE 160 (319)
T ss_pred HHHHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCC--CCCEEEECC
Confidence 334578999999765432 321 1234444444444333222 22666643 78999999887642 235444333
Q ss_pred cCcCcCCccccchhHHHHHhCCeEEEcccCc
Q 021569 226 YSLIYRKPEENGVKAACDELGITLIAYCPIA 256 (311)
Q Consensus 226 ~~~~~~~~~~~~l~~~~~~~gi~v~a~spL~ 256 (311)
.. + -+.+.+.|+++|..+++.+|..
T Consensus 161 ~e----n--~~~i~~lA~~y~~~Vva~s~~D 185 (319)
T PRK04452 161 ED----N--YKKIAAAAMAYGHAVIAWSPLD 185 (319)
T ss_pred HH----H--HHHHHHHHHHhCCeEEEEcHHH
Confidence 21 1 1259999999999999988654
No 28
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=84.66 E-value=23 Score=35.25 Aligned_cols=105 Identities=15% Similarity=0.105 Sum_probs=60.3
Q ss_pred HHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHHHHHHhhCCCCcceEEecCCCCCC-----hHHHHHHHH
Q 021569 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGLG 184 (311)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~-----~~~~~~~l~ 184 (311)
|+.|-++|+....+.+.+-++|.|-+. ++-|-..++...+.++.+.++++.++.|.... .+.+++++-
T Consensus 70 ~~~L~~aI~~~~~~~~P~~I~V~sTC~-------selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~~~g~~~al~~lv 142 (511)
T TIGR01278 70 QTRLVDTVRRVDDRFKPDLIVVTPSCT-------SSLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKENQAADRTLTQLV 142 (511)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCh-------HHHhccCHHHHHHHhccCCCcEEEecCCCcccchhHHHHHHHHHHH
Confidence 777777777654322235566666652 34444555555566665568899999887522 222333222
Q ss_pred H-H----------HHcCccceEeecCC---cHHHHHHHHHHHHhcCCCeee
Q 021569 185 D-A----------VEQGLVKAVGVSNY---SEKRLRNAYEKLKKRGIPLAS 221 (311)
Q Consensus 185 ~-l----------~~~G~ir~iGvSn~---~~~~l~~~~~~~~~~g~~~~~ 221 (311)
+ + .+.+.|--||.++. .+..+.++...++..|+.+.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~ 193 (511)
T TIGR01278 143 RRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNV 193 (511)
T ss_pred HHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEE
Confidence 1 1 12456888998863 345566666666666765543
No 29
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=84.61 E-value=5.9 Score=34.12 Aligned_cols=153 Identities=18% Similarity=0.182 Sum_probs=93.9
Q ss_pred HHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHHH-----
Q 021569 79 AAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD----- 153 (311)
Q Consensus 79 ~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~~----- 153 (311)
++|..-++-|-+.+|-.. |+| .+-+.|+... ++.. .| -..+.+.+.+++.+
T Consensus 5 ~~I~~~I~pgsrVLDLGC--GdG----------~LL~~L~~~k------~v~g---~G---vEid~~~v~~cv~rGv~Vi 60 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGC--GDG----------ELLAYLKDEK------QVDG---YG---VEIDPDNVAACVARGVSVI 60 (193)
T ss_pred HHHHHHcCCCCEEEecCC--Cch----------HHHHHHHHhc------CCeE---EE---EecCHHHHHHHHHcCCCEE
Confidence 466777888999998643 222 2335555432 1100 11 23456666666544
Q ss_pred ------HHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeeeeeccC
Q 021569 154 ------SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (311)
Q Consensus 154 ------SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~ 227 (311)
.|..+.-+..|.+.+..-- .........|+++.+-|+---|++.||.-+..+.-+- ..|-.|..-+.+|+
T Consensus 61 q~Dld~gL~~f~d~sFD~VIlsqtL-Q~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~---~~GrmPvt~~lPy~ 136 (193)
T PF07021_consen 61 QGDLDEGLADFPDQSFDYVILSQTL-QAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLL---LRGRMPVTKALPYE 136 (193)
T ss_pred ECCHHHhHhhCCCCCccEEehHhHH-HhHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHH---hcCCCCCCCCCCCc
Confidence 4444444555555544210 0122334457777888988889999999888776542 24446788888988
Q ss_pred cCcCCccc----cchhHHHHHhCCeEEEcccCcccc
Q 021569 228 LIYRKPEE----NGVKAACDELGITLIAYCPIAQGA 259 (311)
Q Consensus 228 ~~~~~~~~----~~l~~~~~~~gi~v~a~spL~~G~ 259 (311)
-++...-. .+..++|++.||.|.-..++..+.
T Consensus 137 WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 137 WYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred ccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 77654321 257889999999999988888753
No 30
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=84.26 E-value=30 Score=32.40 Aligned_cols=159 Identities=13% Similarity=0.065 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHHH
Q 021569 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (311)
Q Consensus 74 ~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~~ 153 (311)
.++..+.++.+.+.|++.|-.--..+....+....-.+.| +++++.- .+++.|..... ..++.+...+-
T Consensus 140 ~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v-~~ir~~~----g~~~~l~vDaN---~~~~~~~a~~~--- 208 (357)
T cd03316 140 PEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARV-RAVREAV----GPDVDLMVDAN---GRWDLAEAIRL--- 208 (357)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHH-HHHHHhh----CCCCEEEEECC---CCCCHHHHHHH---
Confidence 4666677788889999988653211110000000002223 3344332 14566666652 23555544333
Q ss_pred HHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccc-eEeecCCcHHHHHHHHHHHHhcCCCeeeeeeccCcCcCC
Q 021569 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 232 (311)
Q Consensus 154 SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~ 232 (311)
+++|. ..++.++..|-+. +.++.+.+|++.-.+. ..|=|-++++.+.++++. -.++++|+-....---
T Consensus 209 -~~~l~--~~~i~~iEqP~~~---~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~-----~~~d~v~~k~~~~GGi 277 (357)
T cd03316 209 -ARALE--EYDLFWFEEPVPP---DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEA-----GAVDIIQPDVTKVGGI 277 (357)
T ss_pred -HHHhC--ccCCCeEcCCCCc---cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHh-----CCCCEEecCccccCCH
Confidence 23332 2355566666432 2467777888876555 556667788888888653 2366666664443211
Q ss_pred ccccchhHHHHHhCCeEEEccc
Q 021569 233 PEENGVKAACDELGITLIAYCP 254 (311)
Q Consensus 233 ~~~~~l~~~~~~~gi~v~a~sp 254 (311)
.+-..+...|+++||.++..+-
T Consensus 278 ~~~~~i~~~a~~~g~~~~~~~~ 299 (357)
T cd03316 278 TEAKKIAALAEAHGVRVAPHGA 299 (357)
T ss_pred HHHHHHHHHHHHcCCeEeccCC
Confidence 1112589999999999887654
No 31
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=84.15 E-value=9.2 Score=34.50 Aligned_cols=52 Identities=19% Similarity=0.133 Sum_probs=30.9
Q ss_pred chhHHHHHhCCeEEEcccCccccccCCCCCCCCCCCCCCCCCchHhHhhHHHHHHHHHHHHHhcCCCc
Q 021569 237 GVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTS 304 (311)
Q Consensus 237 ~l~~~~~~~gi~v~a~spL~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~ 304 (311)
..++.|++.|..++.... .... .. . ...+.++...+.++++.++|+++|+.+
T Consensus 98 ~~i~~a~~lG~~~v~~~~--~~~~-----~~--------~-~~~~~~~~~~~~l~~l~~~A~~~Gv~l 149 (279)
T TIGR00542 98 KAIQLARDLGIRTIQLAG--YDVY-----YE--------E-HDEETRRRFREGLKEAVELAARAQVTL 149 (279)
T ss_pred HHHHHHHHhCCCEEEecC--cccc-----cC--------c-CCHHHHHHHHHHHHHHHHHHHHcCCEE
Confidence 478889999988886431 1000 00 0 012334455666778888888888754
No 32
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=83.84 E-value=6 Score=33.38 Aligned_cols=88 Identities=16% Similarity=0.095 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhcCCCeeeeeeccCcCcCCc-----c---------ccchhHHHHHhCCeEEEcccCccccccCCCCCCC
Q 021569 203 KRLRNAYEKLKKRGIPLASNQVNYSLIYRKP-----E---------ENGVKAACDELGITLIAYCPIAQGALTGKYTPQN 268 (311)
Q Consensus 203 ~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~-----~---------~~~l~~~~~~~gi~v~a~spL~~G~Ltg~~~~~~ 268 (311)
..++++.+.+++.|+.+......++...... . -...+++|++.|+..+...+-..+..
T Consensus 27 ~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~-------- 98 (213)
T PF01261_consen 27 DEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAKRLGAKYIVVHSGRYPSG-------- 98 (213)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHHHHTBSEEEEECTTESSS--------
T ss_pred HHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHHHhCCCceeecCcccccc--------
Confidence 4566666667788887666555544444211 0 12578999999999887664311000
Q ss_pred CCCCCCCCCCchHhHhhHHHHHHHHHHHHHhcCCCc
Q 021569 269 PPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTS 304 (311)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~ 304 (311)
.........+...+.++.+.++|+++|+++
T Consensus 99 ------~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i 128 (213)
T PF01261_consen 99 ------PEDDTEENWERLAENLRELAEIAEEYGVRI 128 (213)
T ss_dssp ------TTSSHHHHHHHHHHHHHHHHHHHHHHTSEE
T ss_pred ------cCCCHHHHHHHHHHHHHHHHhhhhhhcceE
Confidence 011234566777788889999999999754
No 33
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=81.88 E-value=44 Score=32.80 Aligned_cols=110 Identities=13% Similarity=0.095 Sum_probs=58.0
Q ss_pred HHHHHHHHHhccCCCC-CccEEEEeeccCCCCCCCHHHHHHHHHHHHH-hhCCCCcceEEecCCCCCC--hHHHHHHHHH
Q 021569 110 ETLLGRFIKERKQRDP-EVEVTVATKFAALPWRLGRQSVLAALKDSLF-RLGLSSVELYQLHWAGIWG--NEGFIDGLGD 185 (311)
Q Consensus 110 E~~lG~al~~~~~~~~-R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~-rL~~d~iDl~~lH~p~~~~--~~~~~~~l~~ 185 (311)
|+-|-++|+....+.| .+=++|.|-+...--.-+-+.+.+.+++-++ ...--.+.++.+|-|+... ......+++.
T Consensus 71 ~~~L~~~I~~~~~~~~~p~~I~V~tTC~~eiIGDDi~~vv~~~~~~~~~e~~~~~~~vi~v~tpgF~Gs~~~G~~~a~~a 150 (454)
T cd01973 71 AKRVEEGVLVLARRYPDLRVIPIITTCSTEIIGDDIEGVIRKLNEALKEEFPDREVHLIPVHTPSFKGSMVTGYDEAVRS 150 (454)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEECCchHhhhccCHHHHHHHHHhhhhhccCCCCCeEEEeeCCCcCCCHHHHHHHHHHH
Confidence 7777788876543322 2447888877431112333444443333321 1110147888999887632 2233333333
Q ss_pred HHH--------cCccceEeecCCcHHHHHHHHHHHHhcCCCee
Q 021569 186 AVE--------QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (311)
Q Consensus 186 l~~--------~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~ 220 (311)
+++ +++|--||-.+ ++..++++.+.++..|+++.
T Consensus 151 li~~~~~~~~~~~~VNii~~~~-~~~D~~ei~~lL~~~Gl~v~ 192 (454)
T cd01973 151 VVKTIAKKGAPSGKLNVFTGWV-NPGDVVELKHYLSEMDVEAN 192 (454)
T ss_pred HHHHhcccCCCCCcEEEECCCC-ChHHHHHHHHHHHHcCCCEE
Confidence 332 46688787443 35556666666776776544
No 34
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=81.78 E-value=40 Score=30.47 Aligned_cols=137 Identities=12% Similarity=0.046 Sum_probs=75.4
Q ss_pred CHHHHHHHHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeee
Q 021569 143 GRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN 222 (311)
Q Consensus 143 ~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~~ 222 (311)
+.+.+.+...+.. .-|-|+||+=.= .+.....+.+...++.+++.-.+ -|-+-+++++.++++++.++ | .+.+|
T Consensus 23 d~~~i~~~A~~~~-~~GAdiIDVg~~-~~~~eE~~r~~~~v~~l~~~~~~-plsIDT~~~~v~eaaL~~~~--G-~~iIN 96 (261)
T PRK07535 23 DAAFIQKLALKQA-EAGADYLDVNAG-TAVEEEPETMEWLVETVQEVVDV-PLCIDSPNPAAIEAGLKVAK--G-PPLIN 96 (261)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCC-CCchhHHHHHHHHHHHHHHhCCC-CEEEeCCCHHHHHHHHHhCC--C-CCEEE
Confidence 3445554444443 568899998532 11112233445555656544222 37888999999999977643 3 34444
Q ss_pred eeccCcCcCCccccchhHHHHHhCCeEEEcccCccccccCCCCCCCCCCCCCCCCCchHhHhhHHHHHHHHHHHHHhcCC
Q 021569 223 QVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSK 302 (311)
Q Consensus 223 Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spL~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~ 302 (311)
-+... ... .+++++.++++|+.++...--..|. | ...+...+.++.+.+.|.++|+
T Consensus 97 sIs~~--~~~--~~~~~~l~~~~g~~vv~m~~~~~g~----------P----------~t~~~~~~~l~~~v~~a~~~GI 152 (261)
T PRK07535 97 SVSAE--GEK--LEVVLPLVKKYNAPVVALTMDDTGI----------P----------KDAEDRLAVAKELVEKADEYGI 152 (261)
T ss_pred eCCCC--Ccc--CHHHHHHHHHhCCCEEEEecCCCCC----------C----------CCHHHHHHHHHHHHHHHHHcCC
Confidence 43321 111 1258999999999998643222221 0 0111223444556666777887
Q ss_pred Ccchhcc
Q 021569 303 TSTQFSV 309 (311)
Q Consensus 303 s~~qvaL 309 (311)
++.++.+
T Consensus 153 ~~~~Iil 159 (261)
T PRK07535 153 PPEDIYI 159 (261)
T ss_pred CHhHEEE
Confidence 7766543
No 35
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=81.23 E-value=46 Score=30.83 Aligned_cols=159 Identities=16% Similarity=0.147 Sum_probs=89.0
Q ss_pred hhhHHHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHH
Q 021569 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (311)
Q Consensus 71 ~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~ 150 (311)
..+.++..++++.+.+.|++.|.-. | |+---+..-.+++-. ++.... -.++.|+|-... +.+.
T Consensus 48 ~ls~eei~~~i~~~~~~gi~~I~~t---G-GEPll~~~l~~li~~-i~~~~~---~~~i~itTNG~l---------l~~~ 110 (331)
T PRK00164 48 LLSLEEIERLVRAFVALGVRKVRLT---G-GEPLLRKDLEDIIAA-LAALPG---IRDLALTTNGYL---------LARR 110 (331)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEE---C-CCCcCccCHHHHHHH-HHhcCC---CceEEEEcCchh---------HHHH
Confidence 3466888999999999999877642 2 321001111233322 333210 136777776421 1122
Q ss_pred HHHHHHhhCCCCcceEEecCCCC---------CChHHHHHHHHHHHHcCc----cceEeecCCcHHHHHHHHHHHHhcCC
Q 021569 151 LKDSLFRLGLSSVELYQLHWAGI---------WGNEGFIDGLGDAVEQGL----VKAVGVSNYSEKRLRNAYEKLKKRGI 217 (311)
Q Consensus 151 ~~~SL~rL~~d~iDl~~lH~p~~---------~~~~~~~~~l~~l~~~G~----ir~iGvSn~~~~~l~~~~~~~~~~g~ 217 (311)
+ +.|...|++.|- +-+|..++ ...+.++++++.+++.|. |..+-+-..+.+++.++.+.++..++
T Consensus 111 ~-~~L~~agl~~i~-ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~gv 188 (331)
T PRK00164 111 A-AALKDAGLDRVN-VSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRGI 188 (331)
T ss_pred H-HHHHHcCCCEEE-EEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCCC
Confidence 2 234444554432 23344332 246789999999999985 33455556777899999988877665
Q ss_pred CeeeeeeccCcCcCCc--------cccchhHHHHHhCCeEE
Q 021569 218 PLASNQVNYSLIYRKP--------EENGVKAACDELGITLI 250 (311)
Q Consensus 218 ~~~~~Q~~~~~~~~~~--------~~~~l~~~~~~~gi~v~ 250 (311)
. +.-++|.++.... ...++++.++++|+.+.
T Consensus 189 ~--v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 227 (331)
T PRK00164 189 Q--LRFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTLQ 227 (331)
T ss_pred e--EEEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCccc
Confidence 4 3344455443321 11247777888765543
No 36
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=81.11 E-value=41 Score=30.16 Aligned_cols=105 Identities=10% Similarity=-0.114 Sum_probs=69.5
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCcceEEecCCCC--CChHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCC
Q 021569 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGI 217 (311)
Q Consensus 140 ~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~--~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~ 217 (311)
..++.+.-.+..+-..+-+++++|-|=.+..+.. .+..+++++.++|+++|.+- +=+|+-++...+++.+.
T Consensus 71 G~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~v-lpyc~dd~~~ar~l~~~------ 143 (248)
T cd04728 71 GCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTV-LPYCTDDPVLAKRLEDA------ 143 (248)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHc------
Confidence 4577777777777788888999998887776654 46789999999999999765 44677788877777553
Q ss_pred CeeeeeeccCcCcCCc--cccchhHHHHH-hCCeEEE
Q 021569 218 PLASNQVNYSLIYRKP--EENGVKAACDE-LGITLIA 251 (311)
Q Consensus 218 ~~~~~Q~~~~~~~~~~--~~~~l~~~~~~-~gi~v~a 251 (311)
.++++..-=+|+-... ...++++..++ .++.|++
T Consensus 144 G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~ 180 (248)
T cd04728 144 GCAAVMPLGSPIGSGQGLLNPYNLRIIIERADVPVIV 180 (248)
T ss_pred CCCEeCCCCcCCCCCCCCCCHHHHHHHHHhCCCcEEE
Confidence 3444422112222111 01135566666 4788875
No 37
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=80.95 E-value=27 Score=33.55 Aligned_cols=93 Identities=13% Similarity=0.243 Sum_probs=66.1
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCee
Q 021569 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (311)
Q Consensus 141 ~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~ 220 (311)
+.+.+.+.+.+++-.+ |-+|++-+|--- +.+.++.++++| |..|+-+-.-.-+...+..
T Consensus 136 ~mt~d~~~~~ie~qa~----dGVDfmTiH~Gi------~~~~~~~~~~~~--R~~giVSRGGs~~~~WM~~--------- 194 (423)
T TIGR00190 136 DMDEDDMFRAIEKQAK----DGVDFMTIHAGV------LLEYVERLKRSG--RITGIVSRGGAILAAWMLH--------- 194 (423)
T ss_pred hCCHHHHHHHHHHHHH----hCCCEEEEccch------hHHHHHHHHhCC--CccCeecCcHHHHHHHHHH---------
Confidence 4678888888887776 678999999642 578889999999 5667777666655554322
Q ss_pred eeeeccCcCcCCccccchhHHHHHhCCeEEEcccCccccccC
Q 021569 221 SNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTG 262 (311)
Q Consensus 221 ~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spL~~G~Ltg 262 (311)
...=||++.... .+++.|+++++.+ .|+-|+=.|
T Consensus 195 --~~~ENPlye~fD--~lLeI~~~yDVtl----SLGDglRPG 228 (423)
T TIGR00190 195 --HHKENPLYKNFD--YILEIAKEYDVTL----SLGDGLRPG 228 (423)
T ss_pred --cCCcCchHHHHH--HHHHHHHHhCeee----eccCCcCCC
Confidence 123466666544 5999999999998 467665333
No 38
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=80.50 E-value=26 Score=31.56 Aligned_cols=89 Identities=19% Similarity=0.159 Sum_probs=46.0
Q ss_pred CcHHHHHHHHHHHHhcCCCeeeeeec----cCcCcCCcc--------ccchhHHHHHhCCeEEEcccCccccccCCCCCC
Q 021569 200 YSEKRLRNAYEKLKKRGIPLASNQVN----YSLIYRKPE--------ENGVKAACDELGITLIAYCPIAQGALTGKYTPQ 267 (311)
Q Consensus 200 ~~~~~l~~~~~~~~~~g~~~~~~Q~~----~~~~~~~~~--------~~~l~~~~~~~gi~v~a~spL~~G~Ltg~~~~~ 267 (311)
++...++++.+.+++.|+.+...... +++...... -...++.|++.|+.++...+... .+
T Consensus 54 ~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~~~~~~~-----~~--- 125 (283)
T PRK13209 54 WSREQRLALVNALVETGFRVNSMCLSAHRRFPLGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQLAGYDV-----YY--- 125 (283)
T ss_pred CCHHHHHHHHHHHHHcCCceeEEecccccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccc-----cc---
Confidence 34555555555566666655443322 122211110 01367889999999886532100 00
Q ss_pred CCCCCCCCCCCchHhHhhHHHHHHHHHHHHHhcCCCc
Q 021569 268 NPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTS 304 (311)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~ 304 (311)
+ .-.++..+...+.++.+.++|+++|+..
T Consensus 126 ----~----~~~~~~~~~~~~~l~~l~~~A~~~GV~i 154 (283)
T PRK13209 126 ----E----QANNETRRRFIDGLKESVELASRASVTL 154 (283)
T ss_pred ----c----ccHHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 0 0012333445566677888888888743
No 39
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=79.80 E-value=23 Score=34.03 Aligned_cols=93 Identities=13% Similarity=0.210 Sum_probs=66.0
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCee
Q 021569 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (311)
Q Consensus 141 ~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~ 220 (311)
+.+.+.+.+.+++-.+ |-||++-+|--- +.+.++.++++| |..|+-+-.-.-+...+..
T Consensus 139 ~mt~d~~~~~ie~qa~----~GVDfmTiHcGi------~~~~~~~~~~~~--R~~giVSRGGs~~~~WM~~--------- 197 (431)
T PRK13352 139 DMTEDDLFDVIEKQAK----DGVDFMTIHCGV------TRETLERLKKSG--RIMGIVSRGGSFLAAWMLH--------- 197 (431)
T ss_pred hCCHHHHHHHHHHHHH----hCCCEEEEccch------hHHHHHHHHhcC--CccCeecCCHHHHHHHHHH---------
Confidence 5678888888887776 678999999642 577888999998 5667777666655554322
Q ss_pred eeeeccCcCcCCccccchhHHHHHhCCeEEEcccCccccccC
Q 021569 221 SNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTG 262 (311)
Q Consensus 221 ~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spL~~G~Ltg 262 (311)
...=||++.... .+++.|+++++.+ .|+-|+=.|
T Consensus 198 --n~~ENPlye~fD--~lLeI~~~yDVtl----SLGDglRPG 231 (431)
T PRK13352 198 --NNKENPLYEHFD--YLLEILKEYDVTL----SLGDGLRPG 231 (431)
T ss_pred --cCCcCchHHHHH--HHHHHHHHhCeee----eccCCcCCC
Confidence 123466776544 6999999999998 467665333
No 40
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=79.46 E-value=47 Score=33.13 Aligned_cols=104 Identities=10% Similarity=0.113 Sum_probs=52.4
Q ss_pred HHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHHHHHHhhC-CCCcceEEecCCCCCC-----hHHHHHHH
Q 021569 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG-LSSVELYQLHWAGIWG-----NEGFIDGL 183 (311)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~rL~-~d~iDl~~lH~p~~~~-----~~~~~~~l 183 (311)
|+.+-+.|+....+.+.+=++|.|-+.. +-|-+.++...+.++ ..-++++.+|.|.... .+.+++++
T Consensus 70 ~~kL~~~I~~~~~~~~P~~I~V~tTC~~-------eiIGDDi~~v~~~~~~~~~~pVi~v~t~~f~g~~~~g~~~~l~~l 142 (513)
T CHL00076 70 QEKVVDNITRKDKEERPDLIVLTPTCTS-------SILQEDLQNFVDRASIESDSDVILADVNHYRVNELQAADRTLEQI 142 (513)
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCCch-------hhhhcCHHHHHHHhhcccCCCEEEeCCCCCcccHHHHHHHHHHHH
Confidence 5555566654432222356777776632 222223333333232 1236899999986522 12223332
Q ss_pred HH-H--------------HHcCccceEeecCC---cHHHHHHHHHHHHhcCCCee
Q 021569 184 GD-A--------------VEQGLVKAVGVSNY---SEKRLRNAYEKLKKRGIPLA 220 (311)
Q Consensus 184 ~~-l--------------~~~G~ir~iGvSn~---~~~~l~~~~~~~~~~g~~~~ 220 (311)
-+ + +..++|--||.++. ++..+.++...++..|+++.
T Consensus 143 v~~~~~~~~~~~~~~~~~~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~vn 197 (513)
T CHL00076 143 VRFYLEKARKQGTLDQSKTDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEIN 197 (513)
T ss_pred HHHHhhcccccccccccCCCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeEE
Confidence 22 1 12356888987742 23455555555666666543
No 41
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=79.13 E-value=27 Score=33.99 Aligned_cols=108 Identities=13% Similarity=0.083 Sum_probs=51.9
Q ss_pred HHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHHHHHHhhCC-CCcceEEecCCCCC-----ChHHHHHHH
Q 021569 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL-SSVELYQLHWAGIW-----GNEGFIDGL 183 (311)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~rL~~-d~iDl~~lH~p~~~-----~~~~~~~~l 183 (311)
|+-|-++|+....+.+.+=++|.|-+-.. .--+.+...+++.-++... ..+.++.++-|... ..+.++++|
T Consensus 70 ~~~L~~ai~~~~~~~~p~~I~v~ttC~~~---iiGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~gs~~~G~~~a~~al 146 (435)
T cd01974 70 QNNLIDGLKNAYAVYKPDMIAVSTTCMAE---VIGDDLNAFIKNAKNKGSIPADFPVPFANTPSFVGSHITGYDNMVKGI 146 (435)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCchHh---hhhccHHHHHHHHHHhccCCCCCeEEEecCCCCccCHHHHHHHHHHHH
Confidence 77777887765433224557777776321 1122233333222222211 14788899888652 123344444
Q ss_pred HH-HHH-------cCccceEeecCCcHHHHHHHHHHHHhcCCCee
Q 021569 184 GD-AVE-------QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (311)
Q Consensus 184 ~~-l~~-------~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~ 220 (311)
-+ +.. .++|--||-.+...+.+.++.+.++..|+++.
T Consensus 147 ~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~~ 191 (435)
T cd01974 147 LTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDYT 191 (435)
T ss_pred HHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCEE
Confidence 32 222 23455565223221224555555666777653
No 42
>PRK07945 hypothetical protein; Provisional
Probab=78.82 E-value=58 Score=30.54 Aligned_cols=161 Identities=12% Similarity=0.056 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHHH---hccCCCCCc-cEEEEeeccCCCCCCCHHHHHHHH
Q 021569 76 AAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIK---ERKQRDPEV-EVTVATKFAALPWRLGRQSVLAAL 151 (311)
Q Consensus 76 ~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~---~~~~~~~R~-~~~I~tK~~~~~~~~~~~~i~~~~ 151 (311)
...++++.|.+.|+..|=.+++....... ..-+..-+-+.++ ....+. ++ +|++.-=+...+ +...+. .
T Consensus 112 ~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~-~~~~~~~l~~y~~~i~~l~~ky-~~I~Il~GiE~d~~~-~g~~~~----~ 184 (335)
T PRK07945 112 PIEEMARTAAALGHEYCALTDHSPRLTVA-NGLSAERLRKQLDVVAELNEEL-APFRILTGIEVDILD-DGSLDQ----E 184 (335)
T ss_pred CHHHHHHHHHHCCCCEEEEeCCCCCccCC-CCCCHHHHHHHHHHHHHHHHhc-CCceEEEEeEecccC-CCCcch----h
Confidence 35679999999999988777664321000 0000222222221 111111 12 222222222111 111222 2
Q ss_pred HHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccceEeecC------------CcHHHHHHHHHHHHhcCCCe
Q 021569 152 KDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSN------------YSEKRLRNAYEKLKKRGIPL 219 (311)
Q Consensus 152 ~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir~iGvSn------------~~~~~l~~~~~~~~~~g~~~ 219 (311)
++.|+. .||+ +.-+|+....+.++..+.|.++.+.+++..+|=-. .....++++++.+.+.|..+
T Consensus 185 ~~~l~~--~D~v-IgSvH~~~~~~~~~~~~~l~~ai~~~~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~~a~~e~g~~l 261 (335)
T PRK07945 185 PELLDR--LDVV-VASVHSKLRMDAAAMTRRMLAAVANPHTDVLGHCTGRLVTGNRGTRPESKFDAEAVFAACREHGTAV 261 (335)
T ss_pred HHHHHh--CCEE-EEEeecCCCCCHHHHHHHHHHHhcCCCCeEEecCchhhhccccCCCChhhcCHHHHHHHHHHhCCEE
Confidence 333433 4666 66778865444566778888888888888877321 11122466666677777666
Q ss_pred eeeeeccCcCcCCccccchhHHHHHhCCeEE
Q 021569 220 ASNQVNYSLIYRKPEENGVKAACDELGITLI 250 (311)
Q Consensus 220 ~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~ 250 (311)
.+|- +.+...+. ..+++.|++.|+.++
T Consensus 262 EINt---~~~r~~P~-~~il~~a~e~G~~vt 288 (335)
T PRK07945 262 EINS---RPERRDPP-TRLLRLALDAGCLFS 288 (335)
T ss_pred EEeC---CCCCCCCh-HHHHHHHHHcCCeEE
Confidence 6653 33322222 259999999999864
No 43
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=78.81 E-value=49 Score=29.68 Aligned_cols=144 Identities=13% Similarity=0.093 Sum_probs=81.4
Q ss_pred CCHHHHHHHHHHHHHhhCCCCcceEE-ecCCCC--CCh----HHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHh
Q 021569 142 LGRQSVLAALKDSLFRLGLSSVELYQ-LHWAGI--WGN----EGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKK 214 (311)
Q Consensus 142 ~~~~~i~~~~~~SL~rL~~d~iDl~~-lH~p~~--~~~----~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~ 214 (311)
.+.+.+.+..++.+ .-|-|+||+=- --+|+. .+. +.+...++.+++.-.+ -|.+-+++++.++++++..
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v~~aaL~~g-- 96 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDV-PISVDTFNAEVAEAALKAG-- 96 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCcHHHHHHHHHhC--
Confidence 35666666655554 46889999853 334543 112 3345566666655333 3889999999999997652
Q ss_pred cCCCeeeeeeccCcCcCCccccchhHHHHHhCCeEEEcccCccccccCCCCCCCCCCCCCCCCCchHhHhhHHHHHHHHH
Q 021569 215 RGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIK 294 (311)
Q Consensus 215 ~g~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spL~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 294 (311)
.+.+|-+. ....+ .++++.++++|..++....-+.|. ..... ..| +...+.....++++.
T Consensus 97 ---~~iINdis--~~~~~---~~~~~l~~~~~~~vV~m~~~~~~~----~~~~~-------~~~-~~~~~~~~~~~~~~i 156 (258)
T cd00423 97 ---ADIINDVS--GGRGD---PEMAPLAAEYGAPVVLMHMDGTPQ----TMQNN-------PYY-ADVVDEVVEFLEERV 156 (258)
T ss_pred ---CCEEEeCC--CCCCC---hHHHHHHHHcCCCEEEECcCCCCc----ccccC-------CCc-chHHHHHHHHHHHHH
Confidence 33343332 22111 258999999999988765433221 00000 001 122333444555566
Q ss_pred HHHHhcCCCcchhcc
Q 021569 295 ELGENYSKTSTQFSV 309 (311)
Q Consensus 295 ~iA~~~g~s~~qvaL 309 (311)
+.+.+.|+++.++.+
T Consensus 157 ~~~~~~Gi~~~~Iil 171 (258)
T cd00423 157 EAATEAGIPPEDIIL 171 (258)
T ss_pred HHHHHcCCCHHHEEE
Confidence 667788887766654
No 44
>PRK00208 thiG thiazole synthase; Reviewed
Probab=78.37 E-value=50 Score=29.61 Aligned_cols=106 Identities=10% Similarity=-0.117 Sum_probs=69.8
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCcceEEecCCCC--CChHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCC
Q 021569 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGI 217 (311)
Q Consensus 140 ~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~--~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~ 217 (311)
..++.+.-.+..+-..+-+++++|-|=.+..+.. .+..+++++.++|+++|.+- +=+|+-++...+++.+.
T Consensus 71 G~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~v-lpyc~~d~~~ak~l~~~------ 143 (250)
T PRK00208 71 GCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVV-LPYCTDDPVLAKRLEEA------ 143 (250)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHc------
Confidence 4577777777777778888999988877776654 46789999999999999765 44677788877777553
Q ss_pred CeeeeeeccCcCcCCc--cccchhHHHHH-hCCeEEEc
Q 021569 218 PLASNQVNYSLIYRKP--EENGVKAACDE-LGITLIAY 252 (311)
Q Consensus 218 ~~~~~Q~~~~~~~~~~--~~~~l~~~~~~-~gi~v~a~ 252 (311)
.++++..-=+|+-... ...++++..++ .++.|++-
T Consensus 144 G~~~vmPlg~pIGsg~gi~~~~~i~~i~e~~~vpVIve 181 (250)
T PRK00208 144 GCAAVMPLGAPIGSGLGLLNPYNLRIIIEQADVPVIVD 181 (250)
T ss_pred CCCEeCCCCcCCCCCCCCCCHHHHHHHHHhcCCeEEEe
Confidence 3444422112222110 01135666666 47888763
No 45
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=78.24 E-value=45 Score=33.29 Aligned_cols=104 Identities=14% Similarity=0.123 Sum_probs=57.8
Q ss_pred HHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHHHHHHhhCCCCcceEEecCCCCCC-----hHHHHHHHH
Q 021569 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGLG 184 (311)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~-----~~~~~~~l~ 184 (311)
|+.|-++|+....+.+.+=++|.|-+. .+-|-..++...++++. .++++.++.|.... .+.++.++-
T Consensus 70 ~ekL~~aI~~~~~~~~P~~I~V~sTC~-------seiIGdDi~~v~~~~~~-~~~Vi~v~t~gf~~~~~~G~~~al~~lv 141 (519)
T PRK02910 70 AELLKDTLRRADERFQPDLIVVGPSCT-------AELLQEDLGGLAKHAGL-PIPVLPLELNAYRVKENWAADETFYQLV 141 (519)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcH-------HHHhccCHHHHHHHhCC-CCCEEEEecCCcccccchHHHHHHHHHH
Confidence 666667776553222234567777652 34444455555555554 36799999887521 223333322
Q ss_pred H-HH-----------HcCccceEeecCC---cHHHHHHHHHHHHhcCCCeee
Q 021569 185 D-AV-----------EQGLVKAVGVSNY---SEKRLRNAYEKLKKRGIPLAS 221 (311)
Q Consensus 185 ~-l~-----------~~G~ir~iGvSn~---~~~~l~~~~~~~~~~g~~~~~ 221 (311)
+ +. +.++|--||.++. ++..+.++...++..|+++.+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~vn~ 193 (519)
T PRK02910 142 RALAKKAAELPQPKTARPSVNLLGPTALGFHHRDDLTELRRLLATLGIDVNV 193 (519)
T ss_pred HHHhhhcccccccCCCCCeEEEEecCccCCCChhHHHHHHHHHHHcCCeEEE
Confidence 1 21 2345888888652 456666666667777765543
No 46
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=78.22 E-value=32 Score=30.84 Aligned_cols=52 Identities=15% Similarity=0.043 Sum_probs=29.3
Q ss_pred chhHHHHHhCCeEEEcccCccccccCCCCCCCCCCCCCCCCCchHhHhhHHHHHHHHHHHHHhcCCCc
Q 021569 237 GVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTS 304 (311)
Q Consensus 237 ~l~~~~~~~gi~v~a~spL~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~ 304 (311)
..++.|++.|+.++...+.. .+.. ......++...+.++++.++|+++|+..
T Consensus 98 ~~i~~a~~lG~~~v~~~~~~------~~~~----------~~~~~~~~~~~~~l~~l~~~a~~~gv~l 149 (284)
T PRK13210 98 KAIRLAQDLGIRTIQLAGYD------VYYE----------EKSEETRQRFIEGLAWAVEQAAAAQVML 149 (284)
T ss_pred HHHHHHHHhCCCEEEECCcc------cccc----------cccHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 47888888888887642110 0000 0012334455566667777788887643
No 47
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=77.68 E-value=61 Score=30.15 Aligned_cols=139 Identities=15% Similarity=0.160 Sum_probs=81.2
Q ss_pred hhhHHHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHH
Q 021569 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (311)
Q Consensus 71 ~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~ 150 (311)
..+.++..++++.+.+.|+..|.-. | |+---+..-++++.. +++... ..++.|+|-.. .+.+
T Consensus 44 ~ls~eei~~li~~~~~~Gv~~I~~t---G-GEPllr~dl~~li~~-i~~~~~---l~~i~itTNG~---------ll~~- 105 (329)
T PRK13361 44 VLSLEELAWLAQAFTELGVRKIRLT---G-GEPLVRRGCDQLVAR-LGKLPG---LEELSLTTNGS---------RLAR- 105 (329)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEE---C-cCCCccccHHHHHHH-HHhCCC---CceEEEEeChh---------HHHH-
Confidence 3567888999999999999877532 3 321001111233322 233220 12566666541 1222
Q ss_pred HHHHHHhhCCCCcceEEecCCCC---------CChHHHHHHHHHHHHcCc----cceEeecCCcHHHHHHHHHHHHhcCC
Q 021569 151 LKDSLFRLGLSSVELYQLHWAGI---------WGNEGFIDGLGDAVEQGL----VKAVGVSNYSEKRLRNAYEKLKKRGI 217 (311)
Q Consensus 151 ~~~SL~rL~~d~iDl~~lH~p~~---------~~~~~~~~~l~~l~~~G~----ir~iGvSn~~~~~l~~~~~~~~~~g~ 217 (311)
.-+.|+..|+++|.+ -|+..++ ...+.+++.++.+++.|. |..+-+...+.+++.++++.+...|+
T Consensus 106 ~~~~L~~aGl~~v~I-SlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~gi 184 (329)
T PRK13361 106 FAAELADAGLKRLNI-SLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRERGL 184 (329)
T ss_pred HHHHHHHcCCCeEEE-EeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHhcCC
Confidence 334556667766653 4444432 136789999999999985 23445556788999999999888776
Q ss_pred CeeeeeeccCcCc
Q 021569 218 PLASNQVNYSLIY 230 (311)
Q Consensus 218 ~~~~~Q~~~~~~~ 230 (311)
.+.+ ++|-|+.
T Consensus 185 ~~~~--ie~mP~g 195 (329)
T PRK13361 185 DIAF--IEEMPLG 195 (329)
T ss_pred eEEE--EecccCC
Confidence 5433 3444443
No 48
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=77.34 E-value=5.7 Score=37.01 Aligned_cols=154 Identities=18% Similarity=0.139 Sum_probs=88.2
Q ss_pred ccccccceeecCCCCcccccceecccccCCCCCCCCCcCchhhHHHHHHHHHHHHHcCCC--eEEcCCCCCCCcCCCCCc
Q 021569 31 TVKTAEDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGIT--FFDTAEVYGSRASFGAIN 108 (311)
Q Consensus 31 ~~~~~m~~~~lg~sg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~Al~~Gi~--~~DTA~~Yg~g~s~~~~~ 108 (311)
+..++|++..++ .|..|-.+|+|. +|.. .++.|...|.+ .||+++.= -
T Consensus 169 TvYspLk~~g~~-pG~~vgI~GlGG--LGh~------------------aVq~AKAMG~rV~vis~~~~k----k----- 218 (360)
T KOG0023|consen 169 TVYSPLKRSGLG-PGKWVGIVGLGG--LGHM------------------AVQYAKAMGMRVTVISTSSKK----K----- 218 (360)
T ss_pred EEeehhHHcCCC-CCcEEEEecCcc--cchH------------------HHHHHHHhCcEEEEEeCCchh----H-----
Confidence 345578888888 599999999987 6643 46777777766 67765311 1
Q ss_pred hHHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHH
Q 021569 109 SETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVE 188 (311)
Q Consensus 109 sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~ 188 (311)
| ++++..+. |.++++||- + .+.+++..++. .+.+.+--+ .....-..++-|+.
T Consensus 219 -e----ea~~~LGA----d~fv~~~~d--------~-d~~~~~~~~~d-g~~~~v~~~--------a~~~~~~~~~~lk~ 271 (360)
T KOG0023|consen 219 -E----EAIKSLGA----DVFVDSTED--------P-DIMKAIMKTTD-GGIDTVSNL--------AEHALEPLLGLLKV 271 (360)
T ss_pred -H----HHHHhcCc----ceeEEecCC--------H-HHHHHHHHhhc-Ccceeeeec--------cccchHHHHHHhhc
Confidence 4 34566652 344444442 2 23344444433 222222211 11123345677889
Q ss_pred cCccceEeecCCcHHHHHHHHHHHHhcCCCeeeeeeccCcCcCCccccchhHHHHHhCCeE
Q 021569 189 QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITL 249 (311)
Q Consensus 189 ~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v 249 (311)
.|++-.+|+-+- +..+.-+.- -+-...+-.|..-...+.+++++||.+++|..
T Consensus 272 ~Gt~V~vg~p~~-~~~~~~~~l-------il~~~~I~GS~vG~~ket~E~Ldf~a~~~ik~ 324 (360)
T KOG0023|consen 272 NGTLVLVGLPEK-PLKLDTFPL-------ILGRKSIKGSIVGSRKETQEALDFVARGLIKS 324 (360)
T ss_pred CCEEEEEeCcCC-cccccchhh-------hcccEEEEeeccccHHHHHHHHHHHHcCCCcC
Confidence 999999999775 233222211 12233445555555555668999999998754
No 49
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=75.91 E-value=44 Score=32.58 Aligned_cols=104 Identities=19% Similarity=0.156 Sum_probs=56.8
Q ss_pred HHHHHHHHHhccCCCCC-ccEEEEeeccCCCCCCCHHHHHHHHHHHHHhhCCCCcceEEecCCCCCC------hHHHHHH
Q 021569 110 ETLLGRFIKERKQRDPE-VEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG------NEGFIDG 182 (311)
Q Consensus 110 E~~lG~al~~~~~~~~R-~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~------~~~~~~~ 182 (311)
|+-|-++|+....+.++ +=++|.|-+... .--+.+...+++.-++++ +.++.+|-|+... .....++
T Consensus 102 ~~~L~~aI~~~~~~~~p~~~I~V~~tC~~~---liGdDi~~v~~~~~~~~~---~pvi~v~t~gf~g~~~~~G~~~a~~a 175 (443)
T TIGR01862 102 EKKLKKLIHEAFTEFPLIKAISVYATCPTG---LIGDDIEAVAKEVSKEIG---KDVVAVNCPGFAGVSQSKGHHIANIA 175 (443)
T ss_pred HHHHHHHHHHHHHhCCccceEEEECCChHH---HhccCHHHHHHHHHHhcC---CCEEEEecCCccCCccchHHHHHHHH
Confidence 77777787765443333 567777776421 112223333333333333 6899999887522 1222332
Q ss_pred -HHHHH--------HcCccceEeecCCcHHHHHHHHHHHHhcCCCee
Q 021569 183 -LGDAV--------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (311)
Q Consensus 183 -l~~l~--------~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~ 220 (311)
++.++ +.++|--||-.++ +..++++.+.++..|+++.
T Consensus 176 l~~~l~~~~~~~~~~~~~VNiig~~~~-~~d~~el~~lL~~~Gl~v~ 221 (443)
T TIGR01862 176 VINDKVGTREKEITTEYDVNIIGEYNI-GGDAWVMRIYLEEMGIQVV 221 (443)
T ss_pred HHHHHhCCCCcccCCCCeEEEEccCcC-cccHHHHHHHHHHcCCeEE
Confidence 33443 2467888886665 3445555555666777654
No 50
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=75.90 E-value=67 Score=29.79 Aligned_cols=153 Identities=12% Similarity=0.067 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHHHH
Q 021569 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (311)
Q Consensus 75 ~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~~S 154 (311)
++..+.+...++.|++.|=.-- +.... .+.+ +++++.. |.-++.|=-- ..++.+..+ .
T Consensus 134 ~~~~~~a~~~~~~Gf~~~KiKv--~~~~d------~~~v-~~vr~~~---~~~~l~vDaN-----~~~~~~~a~-~---- 191 (324)
T TIGR01928 134 EQMLKQIESLKATGYKRIKLKI--TPQIM------HQLV-KLRRLRF---PQIPLVIDAN-----ESYDLQDFP-R---- 191 (324)
T ss_pred HHHHHHHHHHHHcCCcEEEEEe--CCchh------HHHH-HHHHHhC---CCCcEEEECC-----CCCCHHHHH-H----
Confidence 5566677778889999874321 11110 2333 3444432 1112333222 234555432 1
Q ss_pred HHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccc-eEeecCCcHHHHHHHHHHHHhcCCCeeeeeeccCcCcCCc
Q 021569 155 LFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP 233 (311)
Q Consensus 155 L~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~ 233 (311)
+++|. ..++.++-.|- + .+-++.+.+|++.-.+. ..|-|.++...+..+++. --++++|+...-.---.
T Consensus 192 ~~~l~--~~~~~~iEeP~--~-~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~-----~~~dvi~~d~~~~GGit 261 (324)
T TIGR01928 192 LKELD--RYQLLYIEEPF--K-IDDLSMLDELAKGTITPICLDESITSLDDARNLIEL-----GNVKVINIKPGRLGGLT 261 (324)
T ss_pred HHHHh--hCCCcEEECCC--C-hhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHc-----CCCCEEEeCcchhcCHH
Confidence 33332 23566666553 2 23467888888876665 778889999998887543 23667777654322111
Q ss_pred cccchhHHHHHhCCeEEEcccCcccc
Q 021569 234 EENGVKAACDELGITLIAYCPIAQGA 259 (311)
Q Consensus 234 ~~~~l~~~~~~~gi~v~a~spL~~G~ 259 (311)
+-..+...|+++||.++..+.+..|+
T Consensus 262 ~~~~~~~~A~~~gi~~~~~~~~es~i 287 (324)
T TIGR01928 262 EVQKAIETCREHGAKVWIGGMLETGI 287 (324)
T ss_pred HHHHHHHHHHHcCCeEEEcceEcccH
Confidence 11248899999999998766665553
No 51
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=75.62 E-value=47 Score=31.40 Aligned_cols=144 Identities=19% Similarity=0.198 Sum_probs=87.1
Q ss_pred ccceecccccCCCCCCCCCcCchhhHHHHHHHHHHHHHcC---CCeEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCCC
Q 021569 49 TKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNG---ITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDP 125 (311)
Q Consensus 49 s~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~Al~~G---i~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~ 125 (311)
..+|-=|..+-. |+.......+.++..+++....+.- +-.+|..+..+... ++ +-+.+..
T Consensus 28 ~~~C~RC~~l~h---y~~~~~~~~~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~-------~~-l~~~~~~------ 90 (360)
T TIGR03597 28 EVYCQRCFRLKH---YNEIQDVELNDDDFLNLLNSLGDSNALIVYVVDIFDFEGSLI-------PE-LKRFVGG------ 90 (360)
T ss_pred Ceeecchhhhhc---cCccccCCCCHHHHHHHHhhcccCCcEEEEEEECcCCCCCcc-------HH-HHHHhCC------
Confidence 446666665432 2221111233456666666654321 33568655554321 22 2233321
Q ss_pred CccEEEEeeccCCCCCCCHHHHHHHHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccceEeecCCcHHHH
Q 021569 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRL 205 (311)
Q Consensus 126 R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l 205 (311)
..-++|.+|.-..+.....+.+.+.+.+.++.++....|++++..-.....++.++.|.++.+.+.|--+|.+|..-..|
T Consensus 91 ~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStl 170 (360)
T TIGR03597 91 NPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKARNKKDVYVVGVTNVGKSSL 170 (360)
T ss_pred CCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH
Confidence 35688999986433334556677777777777776555777776655567888999998887667889999999987766
Q ss_pred HHHH
Q 021569 206 RNAY 209 (311)
Q Consensus 206 ~~~~ 209 (311)
-..+
T Consensus 171 iN~l 174 (360)
T TIGR03597 171 INKL 174 (360)
T ss_pred HHHH
Confidence 5554
No 52
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=75.44 E-value=78 Score=30.61 Aligned_cols=103 Identities=13% Similarity=0.108 Sum_probs=51.1
Q ss_pred HHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHHHHHHhhC--CCCcceEEecCCCCCC--hHHHHHHHHHH
Q 021569 111 TLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG--LSSVELYQLHWAGIWG--NEGFIDGLGDA 186 (311)
Q Consensus 111 ~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~rL~--~d~iDl~~lH~p~~~~--~~~~~~~l~~l 186 (311)
+-|-++|++...+.+.+=++|.|-+-. +-|=..++...+++. + -+.++.+|.|.... ....-.+++.+
T Consensus 71 ~kL~~~I~~~~~~~~p~~I~v~~tC~~-------~iIGdDi~~v~~~~~~~~-~~~vi~v~t~gf~g~~~~g~~~al~~l 142 (430)
T cd01981 71 EKVVENITRKDKEEKPDLIVLTPTCTS-------SILQEDLQNFVRAAGLSS-KSPVLPLDVNHYRVNELQAADETFEQL 142 (430)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccH-------HHHhhCHHHHHHHhhhcc-CCCeEEecCCCccchHHHHHHHHHHHH
Confidence 444445544332222355677776532 222222232222222 2 25788899887521 12222222222
Q ss_pred H-----------------HcCccceEeecCCc---HHHHHHHHHHHHhcCCCeee
Q 021569 187 V-----------------EQGLVKAVGVSNYS---EKRLRNAYEKLKKRGIPLAS 221 (311)
Q Consensus 187 ~-----------------~~G~ir~iGvSn~~---~~~l~~~~~~~~~~g~~~~~ 221 (311)
. ++.+|--||.++.+ +..+.++...++..|+++.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~VNiiG~~~~~~~~~~d~~ei~~lL~~~Gl~v~~ 197 (430)
T cd01981 143 VRFYAEKARPQGTPREKTEKPSVNLIGPSSLGFHNRHDCRELKRLLHTLGIEVNV 197 (430)
T ss_pred HHHHhccccccccccccCCCCcEEEEcCCCCCCCCcchHHHHHHHHHHcCCeEEE
Confidence 2 22458888887643 55666666667777776544
No 53
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=74.59 E-value=74 Score=30.56 Aligned_cols=113 Identities=20% Similarity=0.170 Sum_probs=60.7
Q ss_pred EcCCCCCCCcCCCCCchHHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHHHHHHhhCCCCcceEEecCCC
Q 021569 93 DTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAG 172 (311)
Q Consensus 93 DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~ 172 (311)
+..-+||. |+.|-++|++...+.+.+=++|.|-+...--.-+-+.+.+.++ +++ -+.++.+|.|.
T Consensus 63 E~d~VfGg---------~~~L~~~i~~~~~~~~P~~i~v~~tC~~~~iGdDi~~v~~~~~---~~~---~~~vi~v~t~g 127 (410)
T cd01968 63 EKDVIFGG---------EKKLYKAILEIIERYHPKAVFVYSTCVVALIGDDIDAVCKTAS---EKF---GIPVIPVHSPG 127 (410)
T ss_pred ccceeecc---------HHHHHHHHHHHHHhCCCCEEEEECCCchhhhccCHHHHHHHHH---Hhh---CCCEEEEECCC
Confidence 44456776 7777788776543333456788877743211223333333332 233 36788888876
Q ss_pred CCC-----hHHHHHHHHHHHH---------cCccceEeecCCcHHHHHHHHHHHHhcCCCeee
Q 021569 173 IWG-----NEGFIDGLGDAVE---------QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (311)
Q Consensus 173 ~~~-----~~~~~~~l~~l~~---------~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~ 221 (311)
... .+.++++|-+... ++.|--||-.++. ..+.++.+.++..|+++.+
T Consensus 128 f~g~~~~G~~~a~~~l~~~l~~~~~~~~~~~~~VNiig~~~~~-~d~~el~~lL~~~Gl~v~~ 189 (410)
T cd01968 128 FVGNKNLGNKLACEALLDHVIGTEEPEPLTPYDINLIGEFNVA-GELWGVKPLLEKLGIRVLA 189 (410)
T ss_pred cccChhHHHHHHHHHHHHHhcCCCCcccCCCCcEEEECCCCCc-ccHHHHHHHHHHcCCeEEE
Confidence 521 2334445443331 4678888855442 3344454556666766543
No 54
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=74.46 E-value=21 Score=33.94 Aligned_cols=103 Identities=20% Similarity=0.207 Sum_probs=57.8
Q ss_pred HHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHHHHHHhhCCCCcceEEecCCCCC-----ChHHHHHHHH
Q 021569 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW-----GNEGFIDGLG 184 (311)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~-----~~~~~~~~l~ 184 (311)
|+-|-+++++...+..++=++|.|-+...--.-+.+.+.+.+ -++.+. .++.+|.+... +.+.++.+|-
T Consensus 59 ~~kL~~~i~~~~~~~~P~~i~v~~sC~~~iIGdD~~~v~~~~---~~~~~~---~vi~v~~~gf~~~~~~G~~~a~~~l~ 132 (398)
T PF00148_consen 59 EEKLREAIKEIAEKYKPKAIFVVTSCVPEIIGDDIEAVAREL---QEEYGI---PVIPVHTPGFSGSYSQGYDAALRALA 132 (398)
T ss_dssp HHHHHHHHHHHHHHHSTSEEEEEE-HHHHHTTTTHHHHHHHH---HHHHSS---EEEEEE--TTSSSHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcCCCcEEEEECCCCHHHhCCCHHHHHHHh---hcccCC---cEEEEECCCccCCccchHHHHHHHHH
Confidence 666667666543221136788888774311122333333333 334443 78888877651 2455666655
Q ss_pred HHH-H------cCccceEeecCCcHHHHHHHHHHHHhcCCC
Q 021569 185 DAV-E------QGLVKAVGVSNYSEKRLRNAYEKLKKRGIP 218 (311)
Q Consensus 185 ~l~-~------~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~ 218 (311)
+.. + ++.|--||.++.....+.++.+.++..|++
T Consensus 133 ~~~~~~~~~~~~~~VNiiG~~~~~~~d~~el~~lL~~~Gi~ 173 (398)
T PF00148_consen 133 EQLVKPPEEKKPRSVNIIGGSPLGPGDLEELKRLLEELGIE 173 (398)
T ss_dssp HHHTTGTTTTSSSEEEEEEESTBTHHHHHHHHHHHHHTTEE
T ss_pred hhcccccccCCCCceEEecCcCCCcccHHHHHHHHHHCCCc
Confidence 444 2 367888999988767777777777776754
No 55
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=74.20 E-value=67 Score=28.92 Aligned_cols=144 Identities=17% Similarity=0.163 Sum_probs=78.7
Q ss_pred CCHHHHHHHHHHHHHhhCCCCcceEE-ecCCCC--CChHH----HHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHh
Q 021569 142 LGRQSVLAALKDSLFRLGLSSVELYQ-LHWAGI--WGNEG----FIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKK 214 (311)
Q Consensus 142 ~~~~~i~~~~~~SL~rL~~d~iDl~~-lH~p~~--~~~~~----~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~ 214 (311)
.+.+.+.+..++.+ +-|-|+||+=- --+|+. .+.++ +...++.+++.-.+. |.+=.++++.++++++.
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~--- 95 (257)
T cd00739 21 LSLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDTFRAEVARAALEA--- 95 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHh---
Confidence 34555555554444 45889999853 234543 22333 333456666553343 78889999999998765
Q ss_pred cCCCeeeeeeccCcCcCCccccchhHHHHHhCCeEEEcccCccccccCCCCCCCCCCCCCCCCCchHhHhhHHHHHHHHH
Q 021569 215 RGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIK 294 (311)
Q Consensus 215 ~g~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spL~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 294 (311)
| ...+|-+ +..... .++++.++++|..++...- .|. |.......+.+...+.....+++..
T Consensus 96 -G-~~iINdi--sg~~~~---~~~~~l~~~~~~~vV~m~~--~g~----------p~~~~~~~~~~~~~~~~~~~~~~~i 156 (257)
T cd00739 96 -G-ADIINDV--SGGSDD---PAMLEVAAEYGAPLVLMHM--RGT----------PKTMQENPYYEDVVDEVLSFLEARL 156 (257)
T ss_pred -C-CCEEEeC--CCCCCC---hHHHHHHHHcCCCEEEECC--CCC----------CcccccCCCcccHHHHHHHHHHHHH
Confidence 3 2333333 222211 2599999999999998432 221 1000000011112233444455666
Q ss_pred HHHHhcCCCcchhcc
Q 021569 295 ELGENYSKTSTQFSV 309 (311)
Q Consensus 295 ~iA~~~g~s~~qvaL 309 (311)
+.|.++|++..++.+
T Consensus 157 ~~~~~~Gi~~~~Ii~ 171 (257)
T cd00739 157 EAAESAGVARNRIIL 171 (257)
T ss_pred HHHHHcCCCHHHEEE
Confidence 778888988766643
No 56
>PRK07329 hypothetical protein; Provisional
Probab=74.17 E-value=64 Score=28.67 Aligned_cols=103 Identities=14% Similarity=0.167 Sum_probs=58.2
Q ss_pred HHHHHHHHhhCCCCcceEEecCCCC----------CChHHHH----HHHHHHHHcC-ccceEee----------cCCc--
Q 021569 149 AALKDSLFRLGLSSVELYQLHWAGI----------WGNEGFI----DGLGDAVEQG-LVKAVGV----------SNYS-- 201 (311)
Q Consensus 149 ~~~~~SL~rL~~d~iDl~~lH~p~~----------~~~~~~~----~~l~~l~~~G-~ir~iGv----------Sn~~-- 201 (311)
..+++-|.+...||| +.-+|+.+. .+.++++ +.+.++++.+ ++..+|= ...+
T Consensus 83 ~~~~~~l~~~~~Dyv-IgSvH~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~fdvlgHpDl~~r~~~~~~~~~~ 161 (246)
T PRK07329 83 DDILDFLANKDFDLK-LLSVHHNGVYDYLDDEVADMDKKELLQEYFEKMEEAIGRVHDADVLAHFDYGLRLFDLTVEELK 161 (246)
T ss_pred HHHHHHhccCCCCeE-EEEEEEcCCCCCccHHHhcCCHHHHHHHHHHHHHHHHHccCCCCEeeeccHHHHhCCCCCcChH
Confidence 445566666777887 778887532 1223344 7788888876 5554441 1111
Q ss_pred --HHHHHHHHHHHHhcCCCeeeeeeccCcCcCCccccchhHHHHHhCCeEEEc
Q 021569 202 --EKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAY 252 (311)
Q Consensus 202 --~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~ 252 (311)
...++++++.+++.|..+.+|-..+.-.........+++.|++.|+..+..
T Consensus 162 ~~~~~~~~i~~~~~~~~~~lEiNt~~~~~~~~~~~~~~~l~~~~~~g~~~i~~ 214 (246)
T PRK07329 162 AFEPQLTRIFAKMIDNDLAFELNTKSMYLYGNEGLYRYAIELYKQLGGKLFSI 214 (246)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEECcccccCCCCcchHHHHHHHHHcCCeEEEe
Confidence 245567777777777666665432210000001124789999999864443
No 57
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=74.14 E-value=43 Score=31.20 Aligned_cols=89 Identities=19% Similarity=0.173 Sum_probs=63.8
Q ss_pred CccEEEEeeccCCCCCCCHHHHHHHHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccceEeecCCcHHHH
Q 021569 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRL 205 (311)
Q Consensus 126 R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l 205 (311)
++++.++.|....|+ ...+.+.+++..+.+|. ++.+ ..|...+.+...+.++.+..+| +..|-++..++..+
T Consensus 23 ~~~i~~v~k~~~~pf---~~~~~~Gi~~aa~~~G~---~v~~-~~~~~~d~~~q~~~i~~li~~~-vdgIiv~~~d~~al 94 (336)
T PRK15408 23 AERIAFIPKLVGVGF---FTSGGNGAKEAGKELGV---DVTY-DGPTEPSVSGQVQLINNFVNQG-YNAIIVSAVSPDGL 94 (336)
T ss_pred CcEEEEEECCCCCHH---HHHHHHHHHHHHHHhCC---EEEE-ECCCCCCHHHHHHHHHHHHHcC-CCEEEEecCCHHHH
Confidence 468888888753222 45778889999999984 4443 3343344566678889999876 88899988888877
Q ss_pred HHHHHHHHhcCCCeeee
Q 021569 206 RNAYEKLKKRGIPLASN 222 (311)
Q Consensus 206 ~~~~~~~~~~g~~~~~~ 222 (311)
...++.+...|+|+..+
T Consensus 95 ~~~l~~a~~~gIpVV~~ 111 (336)
T PRK15408 95 CPALKRAMQRGVKVLTW 111 (336)
T ss_pred HHHHHHHHHCCCeEEEe
Confidence 77777777778776554
No 58
>PRK07328 histidinol-phosphatase; Provisional
Probab=73.81 E-value=46 Score=29.98 Aligned_cols=166 Identities=16% Similarity=0.224 Sum_probs=85.3
Q ss_pred HHHHHHHHHHcCCCeEEcCCCCCCC------cCCCCCchHHHHHHHHHh---ccCCCCCccEEEEeeccCCCCCCCHHHH
Q 021569 77 AKAAFDTSLDNGITFFDTAEVYGSR------ASFGAINSETLLGRFIKE---RKQRDPEVEVTVATKFAALPWRLGRQSV 147 (311)
Q Consensus 77 ~~~~l~~Al~~Gi~~~DTA~~Yg~g------~s~~~~~sE~~lG~al~~---~~~~~~R~~~~I~tK~~~~~~~~~~~~i 147 (311)
..+.++.|.+.|+..+=-+++.... ...+-.-+..-+-..++. ...+.++=+|++..=++.. + ..
T Consensus 20 ~ee~v~~A~~~Gl~~i~~TdH~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~l~~~y~~i~Il~GiE~~~~-----~-~~ 93 (269)
T PRK07328 20 PEEYVQAARRAGLKEIGFTDHLPMYFLPPEWRDPGLAMRLEELPFYVSEVERLRARFPDLYVRLGIEADYH-----P-GT 93 (269)
T ss_pred HHHHHHHHHHCCCCEEEEecCCCCCCcCcccccccccccHHHHHHHHHHHHHHHHHcCCCeEEEEEEeccc-----C-Cc
Confidence 4568999999999988666553220 000000001111111111 1100001134444333321 2 23
Q ss_pred HHHHHHHHHhhCCCCcceEEecCCCCC--------------ChHHHH----HHHHHHHHcCccceEeecCC---------
Q 021569 148 LAALKDSLFRLGLSSVELYQLHWAGIW--------------GNEGFI----DGLGDAVEQGLVKAVGVSNY--------- 200 (311)
Q Consensus 148 ~~~~~~SL~rL~~d~iDl~~lH~p~~~--------------~~~~~~----~~l~~l~~~G~ir~iGvSn~--------- 200 (311)
...+++.|++...||+ |.-+|+.+.. +.++++ +.+.++++.|.+.-+|=-.+
T Consensus 94 ~~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~i~~~~~~~~ 172 (269)
T PRK07328 94 EEFLERLLEAYPFDYV-IGSVHYLGAWGFDNPDFVAEYEERDLDELYRRYFALVEQAARSGLFDIIGHPDLIKKFGHRPR 172 (269)
T ss_pred HHHHHHHHHhCCCCeE-EEEEeecCCcCCCChhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHHcCCCCc
Confidence 4555566777667777 7777975421 112233 35777888888877763322
Q ss_pred --cHHHHHHHHHHHHhcCCCeeeeeecc--CcCcCCccccchhHHHHHhCCeEE
Q 021569 201 --SEKRLRNAYEKLKKRGIPLASNQVNY--SLIYRKPEENGVKAACDELGITLI 250 (311)
Q Consensus 201 --~~~~l~~~~~~~~~~g~~~~~~Q~~~--~~~~~~~~~~~l~~~~~~~gi~v~ 250 (311)
....++++++.+.+.|..+.+|-..+ ..-...+ ...+++.|++.|+.++
T Consensus 173 ~~~~~~~~~il~~~~~~g~~lEiNt~~~r~~~~~~yp-~~~il~~~~~~g~~it 225 (269)
T PRK07328 173 EDLTELYEEALDVIAAAGLALEVNTAGLRKPVGEIYP-SPALLRACRERGIPVV 225 (269)
T ss_pred hhHHHHHHHHHHHHHHcCCEEEEEchhhcCCCCCCCC-CHHHHHHHHHcCCCEE
Confidence 12455777777887876666553211 1111111 1258999999998864
No 59
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=73.26 E-value=97 Score=30.41 Aligned_cols=115 Identities=10% Similarity=0.089 Sum_probs=60.4
Q ss_pred cCCCCCCCcCCCCCchHHHHHHHHHhccCCCC-CccEEEEeeccCCCCCCCHHHHHHHHHHHHHhhCCC----CcceEEe
Q 021569 94 TAEVYGSRASFGAINSETLLGRFIKERKQRDP-EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLS----SVELYQL 168 (311)
Q Consensus 94 TA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~-R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~rL~~d----~iDl~~l 168 (311)
..-+||. |+-|-++|+....+.+ .+=++|.|-+... .--+.|..-+++.-++|.-+ .+.++.+
T Consensus 67 ~dvVfGG---------~~kL~~aI~~~~~~~~~p~~I~V~ttC~~e---iIGDDi~~v~~~~~~~~~~e~~~~~~~vv~v 134 (457)
T TIGR02932 67 ESAVFGG---------AKRIEEGVLTLARRYPNLRVIPIITTCSTE---TIGDDIEGSIRKVNRALKKEFPDRKIKLVPV 134 (457)
T ss_pred CceEECc---------HHHHHHHHHHHHHhCCCCCEEEEECCchHH---hhcCCHHHHHHHHHhhhhhhcCCCCCeEEEe
Confidence 3456775 7778888876543321 2457777776421 11222333333222222111 4688999
Q ss_pred cCCCCC-----ChHHHHHHHHHHH-H-----cCccceEeecCCcHHHHHHHHHHHHhcCCCeee
Q 021569 169 HWAGIW-----GNEGFIDGLGDAV-E-----QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (311)
Q Consensus 169 H~p~~~-----~~~~~~~~l~~l~-~-----~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~ 221 (311)
|-|+.. ..+.++++|-+.. + +++|--||-.+ ++..++++.+.++..|+++.+
T Consensus 135 ~tpgF~gs~~~G~~~a~~ali~~~~~~~~~~~~~VNii~~~~-~~gD~~eik~lL~~~Gl~vn~ 197 (457)
T TIGR02932 135 HTPSFKGSQVTGYAECVKSVIKTIAAKKGEPSGKLNVFPGWV-NPGDVVLLKHYFSEMGVDANI 197 (457)
T ss_pred eCCCCcCcHHHHHHHHHHHHHHHHhhccCCCCCcEEEECCCC-ChHHHHHHHHHHHHcCCCEEE
Confidence 988863 2334444443322 2 36677776443 345556665556666766544
No 60
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=72.48 E-value=73 Score=28.60 Aligned_cols=104 Identities=11% Similarity=-0.024 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHHHHHhhCCCCcceEEecCCCCCChHHHH-HHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCee
Q 021569 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFI-DGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (311)
Q Consensus 142 ~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~-~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~ 220 (311)
.+++.+.+..++.++ -|-|+||+=. .|...+.++-+ +.+..+.+.-. .-|.|-+++++.++++++.+. | ..-
T Consensus 23 ~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~~~~~~ee~~r~v~~i~~~~~-~piSIDT~~~~v~e~aL~~~~--G-~~i 95 (252)
T cd00740 23 EDYDEALDVARQQVE-GGAQILDLNV--DYGGLDGVSAMKWLLNLLATEPT-VPLMLDSTNWEVIEAGLKCCQ--G-KCV 95 (252)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECC--CCCCCCHHHHHHHHHHHHHHhcC-CcEEeeCCcHHHHHHHHhhCC--C-CcE
Confidence 456667777766665 4999999854 23322323323 23222222212 237788899999999976531 3 233
Q ss_pred eeeeccCcCcCCccccchhHHHHHhCCeEEEccc
Q 021569 221 SNQVNYSLIYRKPEENGVKAACDELGITLIAYCP 254 (311)
Q Consensus 221 ~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~sp 254 (311)
+|-+.....+. ....+++.++++|..++...-
T Consensus 96 INsIs~~~~~e--~~~~~~~~~~~~~~~vV~m~~ 127 (252)
T cd00740 96 VNSINLEDGEE--RFLKVARLAKEHGAAVVVLAF 127 (252)
T ss_pred EEeCCCCCCcc--ccHHHHHHHHHhCCCEEEecc
Confidence 44333211111 122588999999999887644
No 61
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=71.72 E-value=53 Score=28.95 Aligned_cols=102 Identities=19% Similarity=0.204 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHHHcCccceEeecC-CcHHHHHHHHHHHHhcCCCeeeeeeccCcCcCCccccchhHHHHHhCCeEEEccc
Q 021569 176 NEGFIDGLGDAVEQGLVKAVGVSN-YSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCP 254 (311)
Q Consensus 176 ~~~~~~~l~~l~~~G~ir~iGvSn-~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~sp 254 (311)
.++..++|..|+ +.+|..-. ++..|...+-..|++.|++ .|.|++..... +++...-+.|..++.-+.
T Consensus 75 ve~L~~~l~~l~----~d~iv~GaI~s~yqk~rve~lc~~lGl~------~~~PLWg~d~~-ell~e~~~~Gf~~~Iv~V 143 (223)
T COG2102 75 VEELKEALRRLK----VDGIVAGAIASEYQKERVERLCEELGLK------VYAPLWGRDPE-ELLEEMVEAGFEAIIVAV 143 (223)
T ss_pred HHHHHHHHHhCc----ccEEEEchhhhHHHHHHHHHHHHHhCCE------EeecccCCCHH-HHHHHHHHcCCeEEEEEE
Confidence 445556666665 55554432 2445555555557777754 35577765433 588888888888887777
Q ss_pred CccccccCCCCCCCCCCCCCCCCCchHhHhhHHHHHHHHHHHHHhcCCCcc
Q 021569 255 IAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTST 305 (311)
Q Consensus 255 L~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~~ 305 (311)
-+.|+-.. -.++.++. +.++.|+.+.++||+.|+
T Consensus 144 sa~gL~~~----------~lGr~i~~-------~~~e~l~~l~~~ygi~~~ 177 (223)
T COG2102 144 SAEGLDES----------WLGRRIDR-------EFLEELKSLNRRYGIHPA 177 (223)
T ss_pred eccCCChH----------HhCCccCH-------HHHHHHHHHHHhcCCCcc
Confidence 77775310 01112222 345588999999999875
No 62
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=71.08 E-value=71 Score=27.89 Aligned_cols=126 Identities=13% Similarity=0.120 Sum_probs=69.0
Q ss_pred hHHHHHHHHHHHHHcCCCeEEcC-CCCCCCcCCCCCchHHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHH
Q 021569 73 KMKAAKAAFDTSLDNGITFFDTA-EVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (311)
Q Consensus 73 ~~~~~~~~l~~Al~~Gi~~~DTA-~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~ 151 (311)
+.++..++++.-.++||..|+.. +..+. . ..+.+-+..+... . ..+.+.+ ....+.++..+
T Consensus 12 ~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~-~------~~~~v~~~~~~~~----~--~~~~~~~-----~~~~~~i~~~~ 73 (237)
T PF00682_consen 12 STEEKLEIAKALDEAGVDYIEVGFPFASE-D------DFEQVRRLREALP----N--ARLQALC-----RANEEDIERAV 73 (237)
T ss_dssp -HHHHHHHHHHHHHHTTSEEEEEHCTSSH-H------HHHHHHHHHHHHH----S--SEEEEEE-----ESCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcccccCH-H------HHHHhhhhhhhhc----c--cccceee-----eehHHHHHHHH
Confidence 45788889999999999999998 32222 1 1344544444333 1 2222222 13455566666
Q ss_pred HHHHHhhCCCCcceEEecCCCC------CC----hHHHHHHHHHHHHcCccceEee---cCCcHHHHHHHHHHHHhcCC
Q 021569 152 KDSLFRLGLSSVELYQLHWAGI------WG----NEGFIDGLGDAVEQGLVKAVGV---SNYSEKRLRNAYEKLKKRGI 217 (311)
Q Consensus 152 ~~SL~rL~~d~iDl~~lH~p~~------~~----~~~~~~~l~~l~~~G~ir~iGv---Sn~~~~~l~~~~~~~~~~g~ 217 (311)
+.. +..|.+.+.++.-=++-. .. .+.+.+.++..++.|....+++ +.++++.+.++.+.+...|.
T Consensus 74 ~~~-~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~ 151 (237)
T PF00682_consen 74 EAA-KEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGA 151 (237)
T ss_dssp HHH-HHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-
T ss_pred Hhh-HhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCC
Confidence 533 456777666554322200 11 2334455566667777777776 34566666666666555443
No 63
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=70.77 E-value=71 Score=31.55 Aligned_cols=141 Identities=18% Similarity=0.205 Sum_probs=80.2
Q ss_pred CCHHHHHHHHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHH----cCccceEeec--CCcHHHHHHHHHHHHhc
Q 021569 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVE----QGLVKAVGVS--NYSEKRLRNAYEKLKKR 215 (311)
Q Consensus 142 ~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~----~G~ir~iGvS--n~~~~~l~~~~~~~~~~ 215 (311)
.+.+.|.+.++. +..+|...+=|..=..|...+.+.+.+.++.+++ .|.++.|+|+ ..+.++++++. ..
T Consensus 115 Ls~EEI~~ea~~-~~~~G~~~i~LvsGe~p~~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~Lk----ea 189 (469)
T PRK09613 115 LTQEEIREEVKA-LEDMGHKRLALVAGEDPPNCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKKLK----EA 189 (469)
T ss_pred CCHHHHHHHHHH-HHHCCCCEEEEEeCCCCCCCCHHHHHHHHHHHHHhccccCcceeeEEEeecCCHHHHHHHH----Hc
Confidence 467888888875 4678876655432223333567777777777775 4777766664 45667777754 44
Q ss_pred CC-CeeeeeeccCc-----CcCC---c---cccchhHHHHHhCCeEEEcccCccccccCCCCCCCCCCCCCCCCCchHhH
Q 021569 216 GI-PLASNQVNYSL-----IYRK---P---EENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYL 283 (311)
Q Consensus 216 g~-~~~~~Q~~~~~-----~~~~---~---~~~~l~~~~~~~gi~v~a~spL~~G~Ltg~~~~~~~~~~~~~~~~~~~~~ 283 (311)
|+ ...++|--||. +++. . ..-+.++.+++.||.-+ +.|.|-|-. ++.
T Consensus 190 Gv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~V-----g~G~L~GLg----------------e~~ 248 (469)
T PRK09613 190 GIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDV-----GIGVLFGLY----------------DYK 248 (469)
T ss_pred CCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCee-----CeEEEEcCC----------------CCH
Confidence 65 46677776652 1111 0 11146788888898733 445555411 111
Q ss_pred hhHHHHHHHHHHHHHhcCCCcchhc
Q 021569 284 RNLQPLLNRIKELGENYSKTSTQFS 308 (311)
Q Consensus 284 ~~~~~~~~~l~~iA~~~g~s~~qva 308 (311)
.....++..++.+-+++|+.|..|.
T Consensus 249 ~E~~~l~~hl~~L~~~~gvgp~tIs 273 (469)
T PRK09613 249 FEVLGLLMHAEHLEERFGVGPHTIS 273 (469)
T ss_pred HHHHHHHHHHHHHHHhhCCCCcccc
Confidence 1223334456666666766554443
No 64
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=70.73 E-value=18 Score=32.06 Aligned_cols=105 Identities=17% Similarity=0.090 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHHHHHhhCCCCcceEEecCCCCC-ChHHHHHHHHHHHHcC-ccceEeecCCcHHHHHHHHHHHHhcCCCe
Q 021569 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW-GNEGFIDGLGDAVEQG-LVKAVGVSNYSEKRLRNAYEKLKKRGIPL 219 (311)
Q Consensus 142 ~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~-~~~~~~~~l~~l~~~G-~ir~iGvSn~~~~~l~~~~~~~~~~g~~~ 219 (311)
++.+...+-++ .|..+|+++|++-..-.+... ..++.++.++++.+.+ .++...++.-..+.++.+.+ .| +
T Consensus 16 ~s~e~~~~i~~-~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~----~g--~ 88 (265)
T cd03174 16 FSTEDKLEIAE-ALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALE----AG--V 88 (265)
T ss_pred CCHHHHHHHHH-HHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHh----CC--c
Confidence 45555555444 477889988888665443221 1345788888888888 57766777655555555533 33 3
Q ss_pred eeeeeccCcCc--------CCc-----cccchhHHHHHhCCeEEEcc
Q 021569 220 ASNQVNYSLIY--------RKP-----EENGVKAACDELGITLIAYC 253 (311)
Q Consensus 220 ~~~Q~~~~~~~--------~~~-----~~~~l~~~~~~~gi~v~a~s 253 (311)
..+++.+..-+ +.. .-...+++++++|+.+...-
T Consensus 89 ~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 89 DEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 44444444331 111 01146788899998876543
No 65
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=69.36 E-value=16 Score=31.72 Aligned_cols=65 Identities=12% Similarity=0.089 Sum_probs=42.7
Q ss_pred HHhhCCCCcceEEec-CCCCCChHHHHHHHHHHHHcCccceEeec-CCcHHHHHHHHHHHHhcCCCeeeeeecc
Q 021569 155 LFRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGLVKAVGVS-NYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (311)
Q Consensus 155 L~rL~~d~iDl~~lH-~p~~~~~~~~~~~l~~l~~~G~ir~iGvS-n~~~~~l~~~~~~~~~~g~~~~~~Q~~~ 226 (311)
+..+|.||+=+.+.. .|...+.+.. ..+.+.. .+.++.+||. |-+++.+.++.+. ..++++|++-
T Consensus 17 ~~~~GaD~iGfIf~~~SpR~V~~~~a-~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~-----~~~d~vQLHG 83 (207)
T PRK13958 17 ASQLPIDAIGFIHYEKSKRHQTITQI-KKLASAV-PNHIDKVCVVVNPDLTTIEHILSN-----TSINTIQLHG 83 (207)
T ss_pred HHHcCCCEEEEecCCCCcccCCHHHH-HHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHh-----CCCCEEEECC
Confidence 345999999987543 2333344433 3333322 3568899996 7888888888654 4689999974
No 66
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=67.69 E-value=1.2e+02 Score=29.02 Aligned_cols=104 Identities=21% Similarity=0.170 Sum_probs=56.1
Q ss_pred HHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHHHHHHhhCCCCcceEEecCCCCCC------hHHHHHHH
Q 021569 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG------NEGFIDGL 183 (311)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~------~~~~~~~l 183 (311)
|+.|-++|+....+.+.+=++|.|-+...--.-+ +..-+++.-++.+ +.++.+|-|.... .+.++++|
T Consensus 72 ~~~L~~~i~~~~~~~~P~~i~v~~tC~~~~iGdD---i~~v~~~~~~~~~---~~vi~v~t~gf~g~~~~~G~~~a~~al 145 (406)
T cd01967 72 EKKLKKAIKEAYERFPPKAIFVYSTCPTGLIGDD---IEAVAKEASKELG---IPVIPVNCEGFRGVSQSLGHHIANDAI 145 (406)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCCchhhhccC---HHHHHHHHHHhhC---CCEEEEeCCCeeCCcccHHHHHHHHHH
Confidence 7777777766543322355777777643111122 3333333223333 7899999886422 34455555
Q ss_pred HHHH---------HcCccceEeecCCcHHHHHHHHHHHHhcCCCee
Q 021569 184 GDAV---------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (311)
Q Consensus 184 ~~l~---------~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~ 220 (311)
-+.. +.+.|--||..++. ..+.++.+.++..|+++.
T Consensus 146 ~~~l~~~~~~~~~~~~~VNiig~~~~~-~d~~el~~lL~~~Gi~~~ 190 (406)
T cd01967 146 LDHLVGTKEPEEKTPYDVNIIGEYNIG-GDAWVIKPLLEELGIRVN 190 (406)
T ss_pred HHHhcCCCCcCCCCCCeEEEEeccccc-hhHHHHHHHHHHcCCEEE
Confidence 4433 23568888987763 344555555666666543
No 67
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=67.67 E-value=29 Score=30.97 Aligned_cols=96 Identities=10% Similarity=0.161 Sum_probs=51.9
Q ss_pred EeecCCcHH--HHHHHHHHHHhcCCCeeeeeeccC---cCcCC---ccccchhHHHHHhCCeEEEcccCccccccCCCCC
Q 021569 195 VGVSNYSEK--RLRNAYEKLKKRGIPLASNQVNYS---LIYRK---PEENGVKAACDELGITLIAYCPIAQGALTGKYTP 266 (311)
Q Consensus 195 iGvSn~~~~--~l~~~~~~~~~~g~~~~~~Q~~~~---~~~~~---~~~~~l~~~~~~~gi~v~a~spL~~G~Ltg~~~~ 266 (311)
||+|++... .+++.++.+++.|. ..+++..+ .+... ....++.+.++++||.+.++.|...++-. ++
T Consensus 3 lg~~t~~~~~~~l~~~l~~~~~~G~--~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~~~~~-~~-- 77 (275)
T PRK09856 3 TGMFTCGHQRLPIEHAFRDASELGY--DGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETNGYPY-NM-- 77 (275)
T ss_pred eeeeehhheeCCHHHHHHHHHHcCC--CEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCcccCcCc-cc--
Confidence 566665443 36666666666664 33333211 01111 11225788999999999988875433200 00
Q ss_pred CCCCCCCCCCCCchHhHhhHHHHHHHHHHHHHhcCCCc
Q 021569 267 QNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTS 304 (311)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~ 304 (311)
..-++...+...+.+....++|+..|+..
T Consensus 78 ---------~~~~~~~r~~~~~~~~~~i~~a~~lGa~~ 106 (275)
T PRK09856 78 ---------MLGDEHMRRESLDMIKLAMDMAKEMNAGY 106 (275)
T ss_pred ---------cCCCHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 00112233445566667778888888764
No 68
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=67.25 E-value=24 Score=31.44 Aligned_cols=168 Identities=10% Similarity=0.005 Sum_probs=85.7
Q ss_pred ccceecccccCCCCCCCCCcCchhhHHHHHHHHHHHHH-cCCCeEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCCCCc
Q 021569 49 TKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLD-NGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEV 127 (311)
Q Consensus 49 s~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~Al~-~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~ 127 (311)
|+|-+||..+.+. +++..|++ +|-..+-.|=---+-.. ...+.-+-+.|+ ++
T Consensus 9 SRL~lGTgky~s~-----------------~~m~~ai~aSg~evvTvalRR~~~~~---~~~~~~~~~~i~-------~~ 61 (247)
T PF05690_consen 9 SRLILGTGKYPSP-----------------EVMREAIEASGAEVVTVALRRVNLGS---KPGGDNILDYID-------RS 61 (247)
T ss_dssp -SEEEE-STSSSH-----------------HHHHHHHHHTT-SEEEEECCGSTTTS----TTCHHCCCCTT-------CC
T ss_pred cceEEecCCCCCH-----------------HHHHHHHHHhCCcEEEEEEecccCCC---CCCCccHHHHhc-------cc
Confidence 7899999876432 35666665 47766655522211100 000112212221 34
Q ss_pred cEEEEeeccCCCCCCCHHHHHHHHHHHHHhhCCCCcceEEecCCCC--CChHHHHHHHHHHHHcCccceEeecCCcHHHH
Q 021569 128 EVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRL 205 (311)
Q Consensus 128 ~~~I~tK~~~~~~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~--~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l 205 (311)
++.+--.. ...++.+.-.+..+-..+-+++++|-|=.+..+.. .+..+++++-+.|+++|.+- +=-++-++-..
T Consensus 62 ~~~lLPNT---aGc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~V-lPY~~~D~v~a 137 (247)
T PF05690_consen 62 GYTLLPNT---AGCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVV-LPYCTDDPVLA 137 (247)
T ss_dssp TSEEEEE----TT-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EE-EEEE-S-HHHH
T ss_pred CCEECCcC---CCCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEE-eecCCCCHHHH
Confidence 44443332 23577887777788888889999888766665543 35789999999999999764 33345555555
Q ss_pred HHHHHHHHhcCCCeeeeeeccCcCcCCcc--c-cchhHHHHHhCCeEEEcc
Q 021569 206 RNAYEKLKKRGIPLASNQVNYSLIYRKPE--E-NGVKAACDELGITLIAYC 253 (311)
Q Consensus 206 ~~~~~~~~~~g~~~~~~Q~~~~~~~~~~~--~-~~l~~~~~~~gi~v~a~s 253 (311)
+++.+. ...+++.-=+|+-.... . ..+-..+++.+|.|+.=.
T Consensus 138 krL~d~------GcaavMPlgsPIGSg~Gi~n~~~l~~i~~~~~vPvIvDA 182 (247)
T PF05690_consen 138 KRLEDA------GCAAVMPLGSPIGSGRGIQNPYNLRIIIERADVPVIVDA 182 (247)
T ss_dssp HHHHHT------T-SEBEEBSSSTTT---SSTHHHHHHHHHHGSSSBEEES
T ss_pred HHHHHC------CCCEEEecccccccCcCCCCHHHHHHHHHhcCCcEEEeC
Confidence 555443 24444444444332110 0 024455667788888643
No 69
>PRK05588 histidinol-phosphatase; Provisional
Probab=67.01 E-value=93 Score=27.65 Aligned_cols=163 Identities=10% Similarity=0.143 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHcCCCeEEcCCCCCCCcCCC-C--CchHHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHH
Q 021569 76 AAKAAFDTSLDNGITFFDTAEVYGSRASFG-A--INSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (311)
Q Consensus 76 ~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~-~--~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~ 152 (311)
...+.++.|.+.|+..+ .+++........ . ..-+..+ +.++... .-+|.+.--++ +.++ ....++
T Consensus 17 ~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~-~~i~~~~----~~~I~~GiE~~-----~~~~-~~~~~~ 84 (255)
T PRK05588 17 KIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYF-NKYSKYR----NNKLLLGIELG-----MEKD-LIEENK 84 (255)
T ss_pred CHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHH-HHHHHHh----cCCcceEEEec-----ccCC-CHHHHH
Confidence 45679999999999998 777742110000 0 0012222 2223322 13454444443 2222 355667
Q ss_pred HHHHhhCCCCcceEEecCCCCC-----------ChHH----HHHHHHHHHH-cCccceEe---ec-------C------C
Q 021569 153 DSLFRLGLSSVELYQLHWAGIW-----------GNEG----FIDGLGDAVE-QGLVKAVG---VS-------N------Y 200 (311)
Q Consensus 153 ~SL~rL~~d~iDl~~lH~p~~~-----------~~~~----~~~~l~~l~~-~G~ir~iG---vS-------n------~ 200 (311)
+.|++...||+ +.-+|+.+.. +.++ .++.+.++++ .|++.-+| +- . .
T Consensus 85 ~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~~dvlgH~Dl~~r~~~~~~~~~~~~~ 163 (255)
T PRK05588 85 ELINKYEFDYV-IGSIHLVDKLDLYLDEFYKDKSKEEAYHIYFENMLKCLEKYDFIDSLGHIDYISRYAKYEDKEIYYDE 163 (255)
T ss_pred HHHhhCCCCeE-EEeEEeeCCCcchHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCCCccCHhHHHHcCccccccccHHH
Confidence 78887787777 6778874321 2333 3466777776 46554444 11 0 0
Q ss_pred cHHHHHHHHHHHHhcCCCeeeeeeccCcCcCCccccchhHHHHHhCCeEEE
Q 021569 201 SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (311)
Q Consensus 201 ~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a 251 (311)
-...++++++.+.+.|..+.+|--.+...........+++.|++.|+.++.
T Consensus 164 ~~~~~~~il~~~~~~g~~lEINt~~l~~~~~~~~~~~~l~~~~~~g~~~i~ 214 (255)
T PRK05588 164 FKEIIDEILKVLIEKEKVLEINTRRLDDKRSVENLVKIYKRFYELGGKYIT 214 (255)
T ss_pred HHHHHHHHHHHHHHcCCEEEEECcccCCCCCCCCHHHHHHHHHHcCCcEEE
Confidence 135567777777777766666542211100000112478889999988544
No 70
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=66.94 E-value=69 Score=30.55 Aligned_cols=92 Identities=11% Similarity=0.087 Sum_probs=62.9
Q ss_pred EEecCCCC------------CChHHHHHHHHHHHHc-Cc---cceEeec--CCcHHHHHHHHHHHHhc----CCCeeeee
Q 021569 166 YQLHWAGI------------WGNEGFIDGLGDAVEQ-GL---VKAVGVS--NYSEKRLRNAYEKLKKR----GIPLASNQ 223 (311)
Q Consensus 166 ~~lH~p~~------------~~~~~~~~~l~~l~~~-G~---ir~iGvS--n~~~~~l~~~~~~~~~~----g~~~~~~Q 223 (311)
+-||.|+. ++.+++++++.+..+. |+ +.|+=+- |.++++.+++.+.++.. +++..+|=
T Consensus 232 iSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNL 311 (371)
T PRK14461 232 ISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNL 311 (371)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEE
Confidence 66898874 3578899998887644 32 2232222 77889999988877532 01678999
Q ss_pred eccCcCcCCccc-------cchhHHHHHhCCeEEEcccCcc
Q 021569 224 VNYSLIYRKPEE-------NGVKAACDELGITLIAYCPIAQ 257 (311)
Q Consensus 224 ~~~~~~~~~~~~-------~~l~~~~~~~gi~v~a~spL~~ 257 (311)
++||+....... ....+.++++||.+......+.
T Consensus 312 Ip~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~ 352 (371)
T PRK14461 312 IPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGV 352 (371)
T ss_pred ecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCc
Confidence 999996542211 1467778899999998887764
No 71
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=66.31 E-value=17 Score=32.41 Aligned_cols=80 Identities=23% Similarity=0.352 Sum_probs=49.3
Q ss_pred CCCcccccceeccc---ccCCCCCCCCCcCchhhHHHHHHHHHHH----HHcCCCeEEcC--CCCCCCcCCCCCchHHHH
Q 021569 43 GSDLKVTKLGVGAW---SWGDTSYWNNFQWDDRKMKAAKAAFDTS----LDNGITFFDTA--EVYGSRASFGAINSETLL 113 (311)
Q Consensus 43 ~sg~~vs~lglGt~---~~g~~~~~~~~~~~~~~~~~~~~~l~~A----l~~Gi~~~DTA--~~Yg~g~s~~~~~sE~~l 113 (311)
.+|+.+|.+||.+. .||+. ++...+++.+++..| .+.|||.|--| ++|=...+ |+..
T Consensus 65 etgv~ipSmClSaHRRfPfGS~--------D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~d------~eT~ 130 (287)
T COG3623 65 ETGVRIPSMCLSAHRRFPFGSK--------DEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEAD------EETR 130 (287)
T ss_pred HhCCCccchhhhhhccCCCCCC--------CHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccCC------HHHH
Confidence 47899999999875 45543 345566777776665 47899999877 33322222 6666
Q ss_pred HHHHHhccCC---CCCccEEEEeecc
Q 021569 114 GRFIKERKQR---DPEVEVTVATKFA 136 (311)
Q Consensus 114 G~al~~~~~~---~~R~~~~I~tK~~ 136 (311)
.+++++.... ..+..+.++--+.
T Consensus 131 ~rFi~g~~~a~~lA~~aqV~lAvEiM 156 (287)
T COG3623 131 QRFIEGLKWAVELAARAQVMLAVEIM 156 (287)
T ss_pred HHHHHHHHHHHHHHHhhccEEEeeec
Confidence 6665543200 0245777777663
No 72
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=65.71 E-value=1.1e+02 Score=29.45 Aligned_cols=95 Identities=14% Similarity=0.134 Sum_probs=59.7
Q ss_pred HhhCCCCcceEEecCCC--C----CChHHHHHHHHHHHHc-CccceEeec---CCcHHHHHHHHHHHHhcCCCeeeeeec
Q 021569 156 FRLGLSSVELYQLHWAG--I----WGNEGFIDGLGDAVEQ-GLVKAVGVS---NYSEKRLRNAYEKLKKRGIPLASNQVN 225 (311)
Q Consensus 156 ~rL~~d~iDl~~lH~p~--~----~~~~~~~~~l~~l~~~-G~ir~iGvS---n~~~~~l~~~~~~~~~~g~~~~~~Q~~ 225 (311)
+.|+ +|++.||.-. + .+.++..+.+++..+. +.=--|+=| ..+++.++++++.+.. -+|-++-..
T Consensus 150 ~~~~---aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~eVLeaaLe~~~G--~kpLL~SAt 224 (389)
T TIGR00381 150 KEFG---ADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPLVLEKAAEVAEG--ERCLLASAN 224 (389)
T ss_pred HHhC---CCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHHHHHHHHHHhCC--CCcEEEecC
Confidence 4554 6788887532 2 2345677777666443 322334434 6689999999877542 245554333
Q ss_pred cCcCcCCccccchhHHHHHhCCeEEEcccCccccc
Q 021569 226 YSLIYRKPEENGVKAACDELGITLIAYCPIAQGAL 260 (311)
Q Consensus 226 ~~~~~~~~~~~~l~~~~~~~gi~v~a~spL~~G~L 260 (311)
... + . ..+.+.|+++|..+++++|..-|.+
T Consensus 225 ~e~---N-y-~~ia~lAk~yg~~Vvv~s~~Din~a 254 (389)
T TIGR00381 225 LDL---D-Y-EKIANAAKKYGHVVLSWTIMDINMQ 254 (389)
T ss_pred chh---h-H-HHHHHHHHHhCCeEEEEcCCcHHHH
Confidence 221 1 1 2599999999999999999887654
No 73
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=65.59 E-value=57 Score=31.62 Aligned_cols=60 Identities=20% Similarity=0.271 Sum_probs=39.8
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCcceEEec-CCCC-----------CCh-H---HHHHH-HHHHHHcCccceEeecCCcH
Q 021569 141 RLGRQSVLAALKDSLFRLGLSSVELYQLH-WAGI-----------WGN-E---GFIDG-LGDAVEQGLVKAVGVSNYSE 202 (311)
Q Consensus 141 ~~~~~~i~~~~~~SL~rL~~d~iDl~~lH-~p~~-----------~~~-~---~~~~~-l~~l~~~G~ir~iGvSn~~~ 202 (311)
..+.+.+.+.++..++ |+.|+|.+|.+- -|.. .|. + +.++. .+.|.+.|. +.+|+|||..
T Consensus 200 ~QT~~~~~~~l~~a~~-l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~yeisnfa~ 276 (416)
T COG0635 200 GQTLESLKEDLEQALE-LGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGY-RQYEISNFAK 276 (416)
T ss_pred CCCHHHHHHHHHHHHh-CCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCC-cEEeechhcC
Confidence 3567777777777665 789999999884 3321 111 1 33443 355667777 9999999975
No 74
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=65.59 E-value=1.1e+02 Score=28.22 Aligned_cols=137 Identities=15% Similarity=0.164 Sum_probs=78.9
Q ss_pred hhHHHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHH
Q 021569 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (311)
Q Consensus 72 ~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~ 151 (311)
.+.++..++++.+.+.|+..|.-. | |+.-=+..-.+++.. ++.... -.++.|+|-... +.+ .
T Consensus 43 ls~eei~~~i~~~~~~gv~~V~lt---G-GEPll~~~l~~li~~-i~~~~g---i~~v~itTNG~l---------l~~-~ 104 (334)
T TIGR02666 43 LTFEEIERLVRAFVGLGVRKVRLT---G-GEPLLRKDLVELVAR-LAALPG---IEDIALTTNGLL---------LAR-H 104 (334)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE---C-ccccccCCHHHHHHH-HHhcCC---CCeEEEEeCchh---------HHH-H
Confidence 466889999999999999877532 3 321001112333433 332210 136778775421 111 2
Q ss_pred HHHHHhhCCCCcceEEecCCCC----------CChHHHHHHHHHHHHcCcc----ceEeecCCcHHHHHHHHHHHHhcCC
Q 021569 152 KDSLFRLGLSSVELYQLHWAGI----------WGNEGFIDGLGDAVEQGLV----KAVGVSNYSEKRLRNAYEKLKKRGI 217 (311)
Q Consensus 152 ~~SL~rL~~d~iDl~~lH~p~~----------~~~~~~~~~l~~l~~~G~i----r~iGvSn~~~~~l~~~~~~~~~~g~ 217 (311)
-+.|++.|+++|- +-+|..++ ...+.++++++.+++.|.- ..+-+.+.+.+++.++.+.+...++
T Consensus 105 ~~~L~~~gl~~v~-ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~~ei~~l~~~~~~~gv 183 (334)
T TIGR02666 105 AKDLKEAGLKRVN-VSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMRGVNDDEIVDLAEFAKERGV 183 (334)
T ss_pred HHHHHHcCCCeEE-EecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhcCC
Confidence 2445566655443 22343322 1357899999999999852 2234456788999999998888776
Q ss_pred CeeeeeeccCcC
Q 021569 218 PLASNQVNYSLI 229 (311)
Q Consensus 218 ~~~~~Q~~~~~~ 229 (311)
.+.. ++|.++
T Consensus 184 ~~~~--ie~mp~ 193 (334)
T TIGR02666 184 TLRF--IELMPL 193 (334)
T ss_pred eEEE--EeccCC
Confidence 5443 244443
No 75
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=64.99 E-value=98 Score=27.21 Aligned_cols=145 Identities=10% Similarity=0.033 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHHHH
Q 021569 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (311)
Q Consensus 75 ~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~~S 154 (311)
....++++.|.+.|+..|=.+++...... .+. ..+.+++ =+++...-+. ...++.+.+.++..
T Consensus 16 ~~~~e~i~~A~~~Gl~~i~itdH~~~~~~-----~~~-~~~~~~~-------i~Il~GiEi~----~~~~~~~~~~~~~~ 78 (237)
T PRK00912 16 DTVLRLISEASHLGYSGIALSNHSDKYPE-----SKP-ELEDLLG-------FEIFRGVEIV----ASNPSKLRGLVGKF 78 (237)
T ss_pred chHHHHHHHHHHCCCCEEEEecCcccccc-----hhH-HHHHhcC-------CcEEeeEEEe----cCCHHHHHHHHHhc
Confidence 45678999999999998877766432100 011 1122211 1233333331 12344444333332
Q ss_pred HHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccceEeecCC---cHHHHHHHHHHHHhcCCCeeeeeeccCcCcC
Q 021569 155 LFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY---SEKRLRNAYEKLKKRGIPLASNQVNYSLIYR 231 (311)
Q Consensus 155 L~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir~iGvSn~---~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~ 231 (311)
+ +.+|++.+| |. .+++. ..+.+.+.|.-||--.. ....-+.++..+.+.|+ ++.+.++++..
T Consensus 79 ~-----~~~d~v~v~-~~---~~~~~---~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~~gv---~lEIn~s~~~~ 143 (237)
T PRK00912 79 R-----KKVDVLAVH-GG---DEKVN---RAACENPRVDILSHPYTKRKDSGINHVLAKEAARNNV---AIEFNLRDILK 143 (237)
T ss_pred c-----CcccEEEEe-CC---CHHHH---HHHHccCCCcEEeCccccCCCCCcCHHHHHHHHHCCe---EEEEEchHhhh
Confidence 1 357888888 22 12222 35778888888776432 11112234444555564 34455554432
Q ss_pred Cc-c--------ccchhHHHHHhCCeEEE
Q 021569 232 KP-E--------ENGVKAACDELGITLIA 251 (311)
Q Consensus 232 ~~-~--------~~~l~~~~~~~gi~v~a 251 (311)
.. + ...++..|++.|+.++.
T Consensus 144 ~~~~~r~~~~~~~~~~~~~~~~~g~piii 172 (237)
T PRK00912 144 SRGGRRARTLSNFRDNLALARKYDFPLVL 172 (237)
T ss_pred hcccHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 11 0 02589999999988863
No 76
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=64.02 E-value=1.4e+02 Score=28.62 Aligned_cols=143 Identities=13% Similarity=0.157 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHcCCC-eEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCCCCccEEEEee--------ccCCCCCCCHH
Q 021569 75 KAAKAAFDTSLDNGIT-FFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATK--------FAALPWRLGRQ 145 (311)
Q Consensus 75 ~~~~~~l~~Al~~Gi~-~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK--------~~~~~~~~~~~ 145 (311)
++-.+-++.|.+.|-. ..|-+. .|+ -..+-+++-+. .++=|.|= ......+.+.+
T Consensus 78 ~~EveK~~~A~~~GADtvMDLSt-Ggd---------l~eiR~~ii~~------s~vPvGTVPIYqA~~~~~~~~~~~t~d 141 (432)
T COG0422 78 DEEVEKAVWAIKWGADTVMDLST-GGD---------LHEIREWIIRN------SPVPVGTVPIYQALEEVNGKVEDLTED 141 (432)
T ss_pred HHHHHHHHHHHHhCcceeEeccc-CCC---------HHHHHHHHHhc------CCCCcCCchHHHHHHHHhcchhhCCHH
Confidence 3334557889999954 456553 344 44555555332 12222221 00001346777
Q ss_pred HHHHHHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeeeeec
Q 021569 146 SVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVN 225 (311)
Q Consensus 146 ~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~ 225 (311)
.+...+++-.+ +-+|.+-+|--- .++.++.+++.| |..|+.+-.-.-+....- .-..
T Consensus 142 ~~~~~v~~qa~----~GVdfmTIHaGV------~~~~~~~~~~~~--R~~giVSRGGsi~a~Wml-----------~~~~ 198 (432)
T COG0422 142 DFFDTVEKQAE----QGVDFMTIHAGV------LLEYVPRTKRSG--RVTGIVSRGGSIMAAWML-----------HNHK 198 (432)
T ss_pred HHHHHHHHHHH----hCCcEEEeehhh------hHHHHHHHHhcC--ceeeeeccchHHHHHHHH-----------HcCC
Confidence 77777777776 568889999632 578889999999 556776665554444321 1123
Q ss_pred cCcCcCCccccchhHHHHHhCCeEEEcccCccccccC
Q 021569 226 YSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTG 262 (311)
Q Consensus 226 ~~~~~~~~~~~~l~~~~~~~gi~v~a~spL~~G~Ltg 262 (311)
=||++.... ++++.|+++++.+- |+-|+=.|
T Consensus 199 ENply~~fd--~lleI~k~yDvtlS----LGDglRPG 229 (432)
T COG0422 199 ENPLYEHFD--ELLEIFKEYDVTLS----LGDGLRPG 229 (432)
T ss_pred cCchhhhHH--HHHHHHHHhCeeee----ccCCCCCC
Confidence 356666544 69999999999984 66665333
No 77
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=63.95 E-value=91 Score=27.60 Aligned_cols=52 Identities=12% Similarity=-0.019 Sum_probs=31.2
Q ss_pred chhHHHHHhCCeEEEcccCccccccCCCCCCCCCCCCCCCCCchHhHhhHHHHHHHHHHHHHhcCCCc
Q 021569 237 GVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTS 304 (311)
Q Consensus 237 ~l~~~~~~~gi~v~a~spL~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~ 304 (311)
+.+++|++.|..++... .|.... .....+..+...+.+.++.++|+++|+..
T Consensus 89 ~~i~~a~~lga~~i~~~---~g~~~~-------------~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l 140 (258)
T PRK09997 89 AAIRYARALGNKKINCL---VGKTPA-------------GFSSEQIHATLVENLRYAANMLMKEDILL 140 (258)
T ss_pred HHHHHHHHhCCCEEEEC---CCCCCC-------------CCCHHHHHHHHHHHHHHHHHHHHHcCCEE
Confidence 58899999999876431 121100 01122334555666778888888888753
No 78
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=63.87 E-value=1.4e+02 Score=28.78 Aligned_cols=104 Identities=15% Similarity=0.142 Sum_probs=54.0
Q ss_pred HHHHHHHHHhccCCCCC-ccEEEEeeccCCCCCCCHHHHHHHHHHHHHhhCCCCcceEEecCCCCCC------hHHHHHH
Q 021569 110 ETLLGRFIKERKQRDPE-VEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG------NEGFIDG 182 (311)
Q Consensus 110 E~~lG~al~~~~~~~~R-~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~------~~~~~~~ 182 (311)
|+-|-++|+....+.++ +-++|.|-+...--.-+.+.+ +++.-++++ ++++.+|-|.... .+...++
T Consensus 83 ~~kL~~~I~~~~~~~~p~~~I~V~tTC~~~iIGdDi~~v---~~~~~~~~~---~pvi~v~t~gf~g~s~~~G~~~a~~a 156 (421)
T cd01976 83 DKKLAKAIDEAYELFPLNKGISVQSECPVGLIGDDIEAV---ARKASKELG---IPVVPVRCEGFRGVSQSLGHHIANDA 156 (421)
T ss_pred HHHHHHHHHHHHHhCCCccEEEEECCChHHHhccCHHHH---HHHHHHhhC---CCEEEEeCCCccCCcccHHHHHHHHH
Confidence 77778888766543333 568888877421112233333 333333343 5788999887522 2222222
Q ss_pred HH-HHH--------HcCccceEeecCCcHHHHHHHHHHHHhcCCCee
Q 021569 183 LG-DAV--------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (311)
Q Consensus 183 l~-~l~--------~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~ 220 (311)
+. .++ +.++|--||-.++. ..+.++.+.++..|+++.
T Consensus 157 i~~~l~~~~~~~~~~~~~VNiiG~~~~~-~d~~el~~lL~~~Gi~v~ 202 (421)
T cd01976 157 IRDHILGKRNEFEPTPYDVNIIGDYNIG-GDAWASRILLEEMGLRVV 202 (421)
T ss_pred HHHHHhccCCccCCCCCeEEEEecCCCC-ccHHHHHHHHHHcCCeEE
Confidence 22 222 13568888866653 333444444566666553
No 79
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=63.33 E-value=1e+02 Score=26.88 Aligned_cols=131 Identities=15% Similarity=0.164 Sum_probs=70.2
Q ss_pred HHHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccceEeec-CCcHHHHHHHHHHHHhcCCCeeeeeeccC
Q 021569 149 AALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVS-NYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (311)
Q Consensus 149 ~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir~iGvS-n~~~~~l~~~~~~~~~~g~~~~~~Q~~~~ 227 (311)
+.++..-+.||+.+. ++-+.+......+....+|.+++++| +..|-.- +++..+-......+...|+++ +.
T Consensus 46 ~~~~~~A~~lgip~~-~i~~~~~~~~~~~~l~~~l~~~~~~g-~~~vv~G~i~sd~~~~~~e~v~~~~gl~~------~~ 117 (218)
T TIGR03679 46 ELTRLQAEALGIPLV-KIETSGEKEKEVEDLKGALKELKREG-VEGIVTGAIASRYQKSRIERICEELGLKV------FA 117 (218)
T ss_pred HHHHHHHHHhCCCEE-EEECCCCChHHHHHHHHHHHHHHHcC-CCEEEECCcccHhHHHHHHHHHHhCCCeE------Ee
Confidence 344555567776532 22222211223445778888888885 5544332 344444444444455555432 23
Q ss_pred cCcCCccccchhHHHHHhCCeEEEcccCccccccCCCCCCCCCCCCCCCCCchHhHhhHHHHHHHHHHHHHhcCCCcc
Q 021569 228 LIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTST 305 (311)
Q Consensus 228 ~~~~~~~~~~l~~~~~~~gi~v~a~spL~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~~ 305 (311)
|++..... ++++.+.+.|+..+.-+.-+.|+- ..+. ++.++. +.++.|.++.+++|++|.
T Consensus 118 PLw~~~~~-el~~~~~~~G~~~~i~~v~~~~l~-~~~l---------G~~~~~-------~~~~~l~~l~~~~~~~~~ 177 (218)
T TIGR03679 118 PLWGRDQE-EYLRELVERGFRFIIVSVSAYGLD-ESWL---------GREIDE-------KYIEKLKALNKRYGINPA 177 (218)
T ss_pred ehhcCCHH-HHHHHHHHCCCEEEEEEEecCCCC-hHHC---------CCccCH-------HHHHHHHHHHhhcCcccc
Confidence 55554433 699999999988876554444421 1110 122222 344578888888888763
No 80
>PRK06740 histidinol-phosphatase; Validated
Probab=63.10 E-value=1.3e+02 Score=28.08 Aligned_cols=100 Identities=13% Similarity=0.122 Sum_probs=60.8
Q ss_pred HHHHHHHHhhCCCCcceEEecCCCC--C------------C----hHHHHHHHHHHHHcCccceEeec------CCc---
Q 021569 149 AALKDSLFRLGLSSVELYQLHWAGI--W------------G----NEGFIDGLGDAVEQGLVKAVGVS------NYS--- 201 (311)
Q Consensus 149 ~~~~~SL~rL~~d~iDl~~lH~p~~--~------------~----~~~~~~~l~~l~~~G~ir~iGvS------n~~--- 201 (311)
..+++.|.....||+ +.-+|+.+. . . .+...+.+.++.+.|++..||=- |+.
T Consensus 156 ~~~~~~l~~~~~Dyv-IgSVH~i~g~~~~~~~~~~~~~~~~~~~~~~~Yf~~~~~~i~~~~fdvIgHpDlik~f~~~~~~ 234 (331)
T PRK06740 156 QELQSLLALGDFDYV-IGSVHFLNGWGFDNPDTKEYFEEHDLYALYDTFFKTVECAIRSELFDIIAHLDNIKVFNYRLDE 234 (331)
T ss_pred HHHHHHHhcCCCCEE-EEeeeEeCCcCCCCccHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHhcCCCcch
Confidence 445566666777777 677787531 0 0 12245678888899988777722 121
Q ss_pred ---HHHHHHHHHHHHhcCCCeeeeee-ccC-cC-cCCccccchhHHHHHhCCeEE
Q 021569 202 ---EKRLRNAYEKLKKRGIPLASNQV-NYS-LI-YRKPEENGVKAACDELGITLI 250 (311)
Q Consensus 202 ---~~~l~~~~~~~~~~g~~~~~~Q~-~~~-~~-~~~~~~~~l~~~~~~~gi~v~ 250 (311)
...++++++.+.+.|..+.+|-. .+. +. ..-+. ..+++.|++.|+.|+
T Consensus 235 ~~~~~~~~~I~~a~~~~g~~lEINt~~~~r~~~~e~yP~-~~il~~~~e~Gv~~t 288 (331)
T PRK06740 235 NEQLSYYKEIARALVETNTATEINAGLYYRYPVREMCPS-PLFLQVLAKHEVPIT 288 (331)
T ss_pred hhhHHHHHHHHHHHHHcCCEEEEECccccCCCCCCCCcC-HHHHHHHHHCCCeEE
Confidence 24677777777778876666643 111 10 01111 248899999999875
No 81
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=62.45 E-value=1.4e+02 Score=28.05 Aligned_cols=158 Identities=13% Similarity=0.121 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCC--CchHHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHH
Q 021569 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGA--INSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (311)
Q Consensus 75 ~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~--~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~ 152 (311)
++..+.+..+.+.|++.|=.--....+..++. ...+.-.=+++++.-. .++.|..=.. ..++.+.. .
T Consensus 125 ~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~D~~~i~avr~~~g----~~~~l~vDaN---~~~~~~~A----~ 193 (352)
T cd03325 125 SDVAEAARARREAGFTAVKMNATEELQWIDTSKKVDAAVERVAALREAVG----PDIDIGVDFH---GRVSKPMA----K 193 (352)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCCcccCCCHHHHHHHHHHHHHHHHhhC----CCCEEEEECC---CCCCHHHH----H
Confidence 45556667778899998865321110000000 0001112234443321 2343433321 23454432 2
Q ss_pred HHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccc-eEeecCCcHHHHHHHHHHHHhcCCCeeeeeeccCcCcC
Q 021569 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYR 231 (311)
Q Consensus 153 ~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~ 231 (311)
+-++.|. .+++.++-.|-+ .+-++.+.+|.++.-+. +.|=|.++.+++..+++. --++++|......--
T Consensus 194 ~~~~~l~--~~~i~~iEeP~~---~~d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~-----~~~d~v~~d~~~~GG 263 (352)
T cd03325 194 DLAKELE--PYRLLFIEEPVL---PENVEALAEIAARTTIPIATGERLFSRWDFKELLED-----GAVDIIQPDISHAGG 263 (352)
T ss_pred HHHHhcc--ccCCcEEECCCC---ccCHHHHHHHHHhCCCCEEecccccCHHHHHHHHHh-----CCCCEEecCccccCC
Confidence 2233332 245666666542 22477888888886665 677888899998888543 135677776543321
Q ss_pred CccccchhHHHHHhCCeEEEcc
Q 021569 232 KPEENGVKAACDELGITLIAYC 253 (311)
Q Consensus 232 ~~~~~~l~~~~~~~gi~v~a~s 253 (311)
-.+-..+.+.|+++||.++..+
T Consensus 264 it~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 264 ITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred HHHHHHHHHHHHHcCCcEeccC
Confidence 1112258999999999998765
No 82
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=62.36 E-value=43 Score=29.24 Aligned_cols=80 Identities=19% Similarity=0.119 Sum_probs=50.4
Q ss_pred HhhCCCCcceEEec-CCCCCChHHHHHHHHHHHHcCc-cceEeec-CCcHHHHHHHHHHHHhcCCCeeeeeeccCcCcCC
Q 021569 156 FRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGL-VKAVGVS-NYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 232 (311)
Q Consensus 156 ~rL~~d~iDl~~lH-~p~~~~~~~~~~~l~~l~~~G~-ir~iGvS-n~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~ 232 (311)
..+|.||+=+.+.- .|.....+. ..++.+.-. ++.+||. |-+.+++.++++. ..++++|++-.
T Consensus 19 ~~~gad~iG~If~~~SpR~Vs~~~----a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~-----~~ld~VQlHG~----- 84 (208)
T COG0135 19 AKAGADYIGFIFVPKSPRYVSPEQ----AREIASAVPKVKVVGVFVNESIEEILEIAEE-----LGLDAVQLHGD----- 84 (208)
T ss_pred HHcCCCEEEEEEcCCCCCcCCHHH----HHHHHHhCCCCCEEEEECCCCHHHHHHHHHh-----cCCCEEEECCC-----
Confidence 35889998877665 454444333 333333333 8899987 5677888888665 57899999854
Q ss_pred ccccchhHHHHHhC-CeEE
Q 021569 233 PEENGVKAACDELG-ITLI 250 (311)
Q Consensus 233 ~~~~~l~~~~~~~g-i~v~ 250 (311)
+..+.++..++.. +.++
T Consensus 85 -e~~~~~~~l~~~~~~~v~ 102 (208)
T COG0135 85 -EDPEYIDQLKEELGVPVI 102 (208)
T ss_pred -CCHHHHHHHHhhcCCceE
Confidence 2224566666553 5554
No 83
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=61.71 E-value=1.1e+02 Score=28.63 Aligned_cols=152 Identities=13% Similarity=0.030 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHHHH
Q 021569 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (311)
Q Consensus 75 ~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~~S 154 (311)
++..+-+..+++.|++.|=.--....-.. ..+.+ +++++.. .+++.|..-.. ..++.+...+.++.
T Consensus 143 ~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~-----d~~~v-~air~~~----g~~~~l~vDaN---~~~~~~~A~~~~~~- 208 (355)
T cd03321 143 KLATERAVTAAEEGFHAVKTKIGYPTADE-----DLAVV-RSIRQAV----GDGVGLMVDYN---QSLTVPEAIERGQA- 208 (355)
T ss_pred HHHHHHHHHHHHhhhHHHhhhcCCCChHh-----HHHHH-HHHHHhh----CCCCEEEEeCC---CCcCHHHHHHHHHH-
Confidence 44555566667778776532110100000 02222 3444432 13454544432 23555543333322
Q ss_pred HHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccc-eEeecCCcHHHHHHHHHHHHhcCCCeeeeeeccCcCcCCc
Q 021569 155 LFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP 233 (311)
Q Consensus 155 L~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~ 233 (311)
|+.+ ++.++..|-. .+-++.+.+|++.--|. ..|=+.+++.++..+++. --++++|+..+..---.
T Consensus 209 l~~~-----~i~~iEeP~~---~~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~-----~~~d~i~~~~~~~GGit 275 (355)
T cd03321 209 LDQE-----GLTWIEEPTL---QHDYEGHARIASALRTPVQMGENWLGPEEMFKALSA-----GACDLVMPDLMKIGGVT 275 (355)
T ss_pred HHcC-----CCCEEECCCC---CcCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHh-----CCCCeEecCHhhhCCHH
Confidence 3333 5556665532 12366777787775443 577777888888888653 23667776655432111
Q ss_pred cccchhHHHHHhCCeEEEcc
Q 021569 234 EENGVKAACDELGITLIAYC 253 (311)
Q Consensus 234 ~~~~l~~~~~~~gi~v~a~s 253 (311)
+...+.++|+++|+.++..+
T Consensus 276 ~~~~ia~~A~~~gi~~~~h~ 295 (355)
T cd03321 276 GWLRASALAEQAGIPMSSHL 295 (355)
T ss_pred HHHHHHHHHHHcCCeecccc
Confidence 11247899999999987543
No 84
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=61.66 E-value=58 Score=31.49 Aligned_cols=109 Identities=7% Similarity=0.024 Sum_probs=59.9
Q ss_pred HHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHHHHHHhhC-CCCcceEEecCCCCCC-----hHHHHHHH
Q 021569 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG-LSSVELYQLHWAGIWG-----NEGFIDGL 183 (311)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~rL~-~d~iDl~~lH~p~~~~-----~~~~~~~l 183 (311)
|+-|-++|+....+.+.+=++|.|-+...--.-+-+.+.+.++ ++.. ...+.++.+|-|+... .+..+++|
T Consensus 66 ~~~L~~~i~~~~~~~~p~~I~V~ttc~~eiIGdDi~~v~~~~~---~~~p~~~~~~vi~v~t~gf~g~~~~G~~~a~~al 142 (417)
T cd01966 66 GENLEEALDTLAERAKPKVIGLLSTGLTETRGEDIAGALKQFR---AEHPELADVPVVYVSTPDFEGSLEDGWAAAVEAI 142 (417)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCcccccccCHHHHHHHHH---hhccccCCCeEEEecCCCCCCcHHHHHHHHHHHH
Confidence 6666677765542222456788877743211222233332222 2210 0146788899887632 23333333
Q ss_pred HH-H--------HHcCccceEeecCCcHHHHHHHHHHHHhcCCCeee
Q 021569 184 GD-A--------VEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (311)
Q Consensus 184 ~~-l--------~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~ 221 (311)
-+ + ++.++|--||-++.++..++++.+.++..|+++.+
T Consensus 143 ~~~l~~~~~~~~~~~~~VNiig~~~~~~~D~~eik~lL~~~Gl~v~~ 189 (417)
T cd01966 143 IEALVEPGSRTVTDPRQVNLLPGAHLTPGDVEELKDIIEAFGLEPII 189 (417)
T ss_pred HHHhcccccccCCCCCcEEEECCCCCCHHHHHHHHHHHHHcCCceEE
Confidence 22 2 23456888887776677777777778777876543
No 85
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=61.61 E-value=1.4e+02 Score=28.82 Aligned_cols=113 Identities=19% Similarity=0.238 Sum_probs=58.9
Q ss_pred EcCCCCCCCcCCCCCchHHHHHHHHHhccCCCCC-ccEEEEeeccCCCCCCCHHHHHHHHHHHHHhhCCCCcceEEecCC
Q 021569 93 DTAEVYGSRASFGAINSETLLGRFIKERKQRDPE-VEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWA 171 (311)
Q Consensus 93 DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R-~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p 171 (311)
++.-+||. |+-|-++|+....+.|+ +=++|.|-+... .--+.+..-+++.-++.+ -++++.+|-|
T Consensus 64 E~d~VfGg---------~~~L~~aI~~~~~~~p~p~~i~V~~tc~~~---liGdDi~~v~~~~~~~~~--~~~vi~v~tp 129 (415)
T cd01977 64 ESHVVFGG---------EKKLKKNIIEAFKEFPDIKRMTVYTTCTTA---LIGDDIKAVAKEVMEELP--DVDIFVCNAP 129 (415)
T ss_pred ccceeecc---------HHHHHHHHHHHHHhCCCCcEEEEECCCchh---hhcCCHHHHHHHHHHhcC--CCeEEEEeCC
Confidence 34456776 67777777755433222 347887777431 112233333333333332 2679999988
Q ss_pred CCCC---h---HHHHHH-HHHHH--------HcCccceEeecCCcHHHHHHHHHHHHhcCCCee
Q 021569 172 GIWG---N---EGFIDG-LGDAV--------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (311)
Q Consensus 172 ~~~~---~---~~~~~~-l~~l~--------~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~ 220 (311)
+... . ..+..+ ++.++ ..+.|--||-.++ +..++++.+.++..|+++.
T Consensus 130 gf~g~~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNliG~~~~-~~d~~ei~~lL~~~Gl~v~ 192 (415)
T cd01977 130 GFAGPSQSKGHHVLNIAWINQKVGTVEPEITSDYTINYIGDYNI-QGDTEVLQKYFERMGIQVL 192 (415)
T ss_pred CcCCcchhHHHHHHHHHHHHHhhCcCCcCcCCCCcEEEEccCCC-cccHHHHHHHHHHcCCeEE
Confidence 7632 1 111222 23333 1467888885544 3345555555666776653
No 86
>PLN02363 phosphoribosylanthranilate isomerase
Probab=61.40 E-value=29 Score=31.26 Aligned_cols=74 Identities=14% Similarity=0.095 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHHHHHhhCCCCcceEEec-CCCCCChHHHHHHHHHHHHcCccceEeec-CCcHHHHHHHHHHHHhcCCCe
Q 021569 142 LGRQSVLAALKDSLFRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGLVKAVGVS-NYSEKRLRNAYEKLKKRGIPL 219 (311)
Q Consensus 142 ~~~~~i~~~~~~SL~rL~~d~iDl~~lH-~p~~~~~~~~~~~l~~l~~~G~ir~iGvS-n~~~~~l~~~~~~~~~~g~~~ 219 (311)
.+.+.++.+. ++|.|||=+.+.. .|.....+ ....+.+......++.+||. |-+++.+.++.+. ..+
T Consensus 55 t~~eda~~a~-----~~GaD~iGfIf~~~SpR~Vs~e-~a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~-----~~l 123 (256)
T PLN02363 55 TSARDAAMAV-----EAGADFIGMILWPKSKRSISLS-VAKEISQVAREGGAKPVGVFVDDDANTILRAADS-----SDL 123 (256)
T ss_pred CcHHHHHHHH-----HcCCCEEEEecCCCCCCcCCHH-HHHHHHHhccccCccEEEEEeCCCHHHHHHHHHh-----cCC
Confidence 3456665554 4899999987533 23223333 33444333333246779985 7888888887654 568
Q ss_pred eeeeecc
Q 021569 220 ASNQVNY 226 (311)
Q Consensus 220 ~~~Q~~~ 226 (311)
+++|++-
T Consensus 124 d~VQLHG 130 (256)
T PLN02363 124 ELVQLHG 130 (256)
T ss_pred CEEEECC
Confidence 8999974
No 87
>PRK09875 putative hydrolase; Provisional
Probab=61.35 E-value=1.3e+02 Score=27.56 Aligned_cols=54 Identities=15% Similarity=0.257 Sum_probs=31.1
Q ss_pred HcCccceEeecC--CcHHHHH---HHHHHHHhcCCCeeeeeeccCcCcCCccccchhHHHHHhCC
Q 021569 188 EQGLVKAVGVSN--YSEKRLR---NAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGI 247 (311)
Q Consensus 188 ~~G~ir~iGvSn--~~~~~l~---~~~~~~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi 247 (311)
+.|.|..||+|. +++.+.+ .+.......|.++.+. .+. .+. ..++++.+++.|+
T Consensus 119 kaGvIGeiG~~~~~it~~E~kvl~Aaa~a~~~TG~pi~~H-t~~---~~~--g~e~l~il~e~Gv 177 (292)
T PRK09875 119 KAGIIAEIGSSEGKITPLEEKVFIAAALAHNQTGRPISTH-TSF---STM--GLEQLALLQAHGV 177 (292)
T ss_pred cccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCcEEEc-CCC---ccc--hHHHHHHHHHcCc
Confidence 557788899986 5654433 3333334456555543 222 111 1247899999998
No 88
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=60.90 E-value=47 Score=28.50 Aligned_cols=148 Identities=11% Similarity=-0.030 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHH
Q 021569 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (311)
Q Consensus 73 ~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~ 152 (311)
|.+++.++++.+++.|+...|. | ++.+..++...+....+++++++-= ....+.+++.+.
T Consensus 10 d~~~~~~~v~~~l~~g~~~~~i---~-----------~~~l~p~m~~iG~~w~~gei~va~~------~~a~~~~~~~l~ 69 (197)
T TIGR02370 10 EEDDVVEGAQKALDAGIDPIEL---I-----------EKGLMAGMGVVGKLFEDGELFLPHV------MMSADAMLAGIK 69 (197)
T ss_pred CHHHHHHHHHHHHHcCCCHHHH---H-----------HHHHHHHHHHHHHHHcCCCccHHHH------HHHHHHHHHHHH
Confidence 4588999999999999876654 3 3444444443321111223332111 012333444444
Q ss_pred HHHHhhCCC----CcceEEecCCCCCChHH--HHHHHHHHHHcCc-cceEeecCCcHHHHHHHHHHHHhcCCCeeeeeec
Q 021569 153 DSLFRLGLS----SVELYQLHWAGIWGNEG--FIDGLGDAVEQGL-VKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVN 225 (311)
Q Consensus 153 ~SL~rL~~d----~iDl~~lH~p~~~~~~~--~~~~l~~l~~~G~-ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~ 225 (311)
.....+..+ .---+++--+.. +..+ ..-.-.-|...|. |.++|. +.+++.+.+.+.. ..|+++.+.
T Consensus 70 ~l~~~~~~~~~~~~~~~vv~~t~~g-d~H~lG~~~v~~~l~~~G~~vi~LG~-~vp~e~~v~~~~~-----~~pd~v~lS 142 (197)
T TIGR02370 70 VLTPEMEKAVETEVLGKVVCGVAEG-DVHDIGKNIVVTMLRANGFDVIDLGR-DVPIDTVVEKVKK-----EKPLMLTGS 142 (197)
T ss_pred HHHHHhhccccCCCCCeEEEEeCCC-chhHHHHHHHHHHHHhCCcEEEECCC-CCCHHHHHHHHHH-----cCCCEEEEc
Confidence 444444321 000111111110 1111 1111223556675 667774 4455665555433 457777666
Q ss_pred cCcCcCCccccchhHHHHHhCC
Q 021569 226 YSLIYRKPEENGVKAACDELGI 247 (311)
Q Consensus 226 ~~~~~~~~~~~~l~~~~~~~gi 247 (311)
++.......-.++++.+++.|+
T Consensus 143 ~~~~~~~~~~~~~i~~l~~~~~ 164 (197)
T TIGR02370 143 ALMTTTMYGQKDINDKLKEEGY 164 (197)
T ss_pred cccccCHHHHHHHHHHHHHcCC
Confidence 6554443333357788888753
No 89
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=60.87 E-value=45 Score=29.20 Aligned_cols=102 Identities=15% Similarity=0.165 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHHHHhhCCCCcceEEecCCCC-CChHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCee
Q 021569 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (311)
Q Consensus 142 ~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~-~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~ 220 (311)
++.+.. ..+-+.|.++|+++|++- +|.. ....+.++.+.+.... .+-.+++....+.++.+++.+...|.+..
T Consensus 11 ~~~~~k-~~i~~~L~~~Gv~~iEvg---~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~~i 84 (237)
T PF00682_consen 11 FSTEEK-LEIAKALDEAGVDYIEVG---FPFASEDDFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGIDII 84 (237)
T ss_dssp --HHHH-HHHHHHHHHHTTSEEEEE---HCTSSHHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTSSEE
T ss_pred cCHHHH-HHHHHHHHHhCCCEEEEc---ccccCHHHHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccCCEE
Confidence 444444 444556999999999987 2211 1223344455555555 55567777788888887776666666544
Q ss_pred eeeeccCcCcCCc-----------cccchhHHHHHhCCeE
Q 021569 221 SNQVNYSLIYRKP-----------EENGVKAACDELGITL 249 (311)
Q Consensus 221 ~~Q~~~~~~~~~~-----------~~~~l~~~~~~~gi~v 249 (311)
.+-...|...... .-.+.+++++++|+.+
T Consensus 85 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 85 RIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp EEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred EecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 4444444411100 0114788999999998
No 90
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=60.67 E-value=22 Score=32.32 Aligned_cols=93 Identities=22% Similarity=0.262 Sum_probs=62.0
Q ss_pred HHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccceEeecC---CcHHHHHHHHHHHHhcCCCeeeeeeccCcCc
Q 021569 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSN---YSEKRLRNAYEKLKKRGIPLASNQVNYSLIY 230 (311)
Q Consensus 154 SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir~iGvSn---~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~ 230 (311)
+|++..-+..|+..+..|.-.. ..++.+ ++... ..|=|+. |....++++++.++..+++..++-+.||+.+
T Consensus 155 ~~kk~a~E~~~~~IIDsaaG~g-CpVi~s---l~~aD--~ai~VTEPTp~glhD~kr~~el~~~f~ip~~iViNr~~~g~ 228 (284)
T COG1149 155 ALKKHAKELADLLIIDSAAGTG-CPVIAS---LKGAD--LAILVTEPTPFGLHDLKRALELVEHFGIPTGIVINRYNLGD 228 (284)
T ss_pred HHHHhhhhhcceeEEecCCCCC-ChHHHh---hccCC--EEEEEecCCccchhHHHHHHHHHHHhCCceEEEEecCCCCc
Confidence 3344443447888888774311 112222 23233 3344443 4557788888888888899888888997655
Q ss_pred CCccccchhHHHHHhCCeEEEcccCcc
Q 021569 231 RKPEENGVKAACDELGITLIAYCPIAQ 257 (311)
Q Consensus 231 ~~~~~~~l~~~~~~~gi~v~a~spL~~ 257 (311)
. ++.++|++.||.+++--|+..
T Consensus 229 s-----~ie~~~~e~gi~il~~IPyd~ 250 (284)
T COG1149 229 S-----EIEEYCEEEGIPILGEIPYDK 250 (284)
T ss_pred h-----HHHHHHHHcCCCeeEECCcch
Confidence 3 489999999999999888865
No 91
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=60.67 E-value=50 Score=27.43 Aligned_cols=90 Identities=10% Similarity=0.077 Sum_probs=56.1
Q ss_pred EEecCCCCCChHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeeeeeccCcCcCCc----cccchhHH
Q 021569 166 YQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP----EENGVKAA 241 (311)
Q Consensus 166 ~~lH~p~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~----~~~~l~~~ 241 (311)
+|+..|.....+++++...+=-++.-|++|=|.+-+-....++++..... ++++++ -||.-.... .+.++.+.
T Consensus 2 ~yf~~pG~eNT~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~-lkvVvV--thh~Gf~e~g~~e~~~E~~~~ 78 (186)
T COG1751 2 VYFEKPGKENTDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGD-LKVVVV--THHAGFEEKGTQEMDEEVRKE 78 (186)
T ss_pred ccccCCcccchHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccC-ceEEEE--EeecccccCCceecCHHHHHH
Confidence 45556655556777776666666777888888777777777777664322 344433 333333322 22368889
Q ss_pred HHHhCCeEEEcccCccc
Q 021569 242 CDELGITLIAYCPIAQG 258 (311)
Q Consensus 242 ~~~~gi~v~a~spL~~G 258 (311)
.+++|..++.-|-.-+|
T Consensus 79 L~erGa~v~~~sHalSg 95 (186)
T COG1751 79 LKERGAKVLTQSHALSG 95 (186)
T ss_pred HHHcCceeeeehhhhhc
Confidence 99999999865544444
No 92
>PRK14017 galactonate dehydratase; Provisional
Probab=60.20 E-value=1.6e+02 Score=28.00 Aligned_cols=157 Identities=14% Similarity=0.102 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHcCCCeEEcCCC-----CCCCcCCCCCchHHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHH
Q 021569 74 MKAAKAAFDTSLDNGITFFDTAEV-----YGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVL 148 (311)
Q Consensus 74 ~~~~~~~l~~Al~~Gi~~~DTA~~-----Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~ 148 (311)
.++..+.+..+++.|++.|=.--. ++.... ...-.+.| +++++.-. .++.|..=.. ..++.+...
T Consensus 125 ~~~~~~~a~~~~~~Gf~~~KiKv~~~~~~~~~~~~--~~~d~~~i-~avr~~~g----~~~~l~vDaN---~~w~~~~A~ 194 (382)
T PRK14017 125 PADVAEAARARVERGFTAVKMNGTEELQYIDSPRK--VDAAVARV-AAVREAVG----PEIGIGVDFH---GRVHKPMAK 194 (382)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCcCCccccccHHH--HHHHHHHH-HHHHHHhC----CCCeEEEECC---CCCCHHHHH
Confidence 355666777788899998865310 000000 00001222 23333221 2444433331 235554322
Q ss_pred HHHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccc-eEeecCCcHHHHHHHHHHHHhcCCCeeeeeeccC
Q 021569 149 AALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (311)
Q Consensus 149 ~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~ 227 (311)
+-++.|. .+++.++-.|-+ . +-++.+.+|.+...+. ..|=|.++...+..+++. --++++|+..+
T Consensus 195 ----~~~~~l~--~~~~~~iEeP~~--~-~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~-----~a~d~v~~d~~ 260 (382)
T PRK14017 195 ----VLAKELE--PYRPMFIEEPVL--P-ENAEALPEIAAQTSIPIATGERLFSRWDFKRVLEA-----GGVDIIQPDLS 260 (382)
T ss_pred ----HHHHhhc--ccCCCeEECCCC--c-CCHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHc-----CCCCeEecCcc
Confidence 2223332 245666666532 1 2257788888887665 677788888888887653 13566776654
Q ss_pred cCcCCccccchhHHHHHhCCeEEEccc
Q 021569 228 LIYRKPEENGVKAACDELGITLIAYCP 254 (311)
Q Consensus 228 ~~~~~~~~~~l~~~~~~~gi~v~a~sp 254 (311)
..---.+-..+.+.|+++||.++..+.
T Consensus 261 ~~GGit~~~~ia~~A~~~gi~~~~h~~ 287 (382)
T PRK14017 261 HAGGITECRKIAAMAEAYDVALAPHCP 287 (382)
T ss_pred ccCCHHHHHHHHHHHHHcCCeEeecCC
Confidence 432111112488899999999987754
No 93
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=60.06 E-value=1.3e+02 Score=27.01 Aligned_cols=98 Identities=19% Similarity=0.211 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHHHHHhhCCCCcceE-EecCCCC--CChH-H---HHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHh
Q 021569 142 LGRQSVLAALKDSLFRLGLSSVELY-QLHWAGI--WGNE-G---FIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKK 214 (311)
Q Consensus 142 ~~~~~i~~~~~~SL~rL~~d~iDl~-~lH~p~~--~~~~-~---~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~ 214 (311)
.+++.+.+..++.+ .-|.++||+= .--+|+. .+.+ | +...++.+++.-.+ -+.+=.++++.++++++.
T Consensus 20 ~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~-plsiDT~~~~vi~~al~~--- 94 (257)
T TIGR01496 20 LSVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDV-PISVDTYRAEVARAALEA--- 94 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCCHHHHHHHHHc---
Confidence 35666666655554 4588999983 2223433 2223 2 44555666655222 378889999999998764
Q ss_pred cCCCeeeeeeccCcCcCCccccchhHHHHHhCCeEEEc
Q 021569 215 RGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAY 252 (311)
Q Consensus 215 ~g~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~ 252 (311)
|. ..+|-+.. .. ..++++.++++|..++..
T Consensus 95 -G~-~iINsis~--~~----~~~~~~l~~~~~~~vV~m 124 (257)
T TIGR01496 95 -GA-DIINDVSG--GQ----DPAMLEVAAEYGVPLVLM 124 (257)
T ss_pred -CC-CEEEECCC--CC----CchhHHHHHHcCCcEEEE
Confidence 43 33443332 21 125999999999999884
No 94
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=59.18 E-value=1e+02 Score=29.19 Aligned_cols=90 Identities=13% Similarity=0.085 Sum_probs=59.1
Q ss_pred EEecCCCC------------CChHHHHHHHHHHHH-cCc---cceEeec--CCcHHHHHHHHHHHHhcCCCeeeeeeccC
Q 021569 166 YQLHWAGI------------WGNEGFIDGLGDAVE-QGL---VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (311)
Q Consensus 166 ~~lH~p~~------------~~~~~~~~~l~~l~~-~G~---ir~iGvS--n~~~~~l~~~~~~~~~~g~~~~~~Q~~~~ 227 (311)
+-||.+++ .+.+++++++.+..+ .|+ |+++=+. |.+.++++++.+.++. +++.++=++||
T Consensus 219 iSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~--l~~~VnLIPyn 296 (355)
T TIGR00048 219 ISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKG--TKCKVNLIPWN 296 (355)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhc--CCCceEEEecc
Confidence 56898874 235788888876654 442 4455444 4466888888877653 45677788999
Q ss_pred cCcCCcc----cc---chhHHHHHhCCeEEEcccCcc
Q 021569 228 LIYRKPE----EN---GVKAACDELGITLIAYCPIAQ 257 (311)
Q Consensus 228 ~~~~~~~----~~---~l~~~~~~~gi~v~a~spL~~ 257 (311)
++..... .+ .+.++.+++|+.++.....+.
T Consensus 297 p~~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~G~ 333 (355)
T TIGR00048 297 PFPEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRGD 333 (355)
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 8653221 11 256677788999998777664
No 95
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=58.81 E-value=1.2e+02 Score=29.60 Aligned_cols=110 Identities=23% Similarity=0.183 Sum_probs=57.5
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCee
Q 021569 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (311)
Q Consensus 141 ~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~ 220 (311)
..+.+.+++.++..++ |+.++|++|.+.-....+ |.+.+++|++....-..-..+..+.+.+.+...|.
T Consensus 226 gqT~e~~~~~l~~~~~-l~~~~is~y~L~~~pgT~-------l~~~~~~g~l~~~~~~~~~~~my~~~~~~L~~~Gy--- 294 (449)
T PRK09058 226 GQTPEIWQQDLAIVRD-LGLDGVDLYALNLLPGTP-------LAKAVEKGKLPPPATPAERADMYAYGVEFLAKAGW--- 294 (449)
T ss_pred CCCHHHHHHHHHHHHh-cCCCEEEEeccccCCCCH-------HHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHCCC---
Confidence 4678888888877664 899999999886422111 23345555543110000111222233333444442
Q ss_pred eeeeccCcCcCCccccchhHHHHHhCCeEEEcccCccccccC
Q 021569 221 SNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTG 262 (311)
Q Consensus 221 ~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spL~~G~Ltg 262 (311)
.|.+.+-+.+...+..+....-..+..+++.++=+.|.+.|
T Consensus 295 -~~yeis~far~~~~~~~~n~~~~~~~~~lg~G~gA~s~~~~ 335 (449)
T PRK09058 295 -RQLSNSHWARTTRERNLYNLLIKQGAECLPFGAGAGGSIGG 335 (449)
T ss_pred -eEEeeeeeecCCccccHHHHHHcCCCCEEEEccCcccccCC
Confidence 34444444443211123444444577788888877777765
No 96
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=58.79 E-value=94 Score=26.23 Aligned_cols=122 Identities=19% Similarity=0.232 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCC--CchHHHHHHHHHhccCCCCCccEEEEeeccC---CCCCCCHHHHHH
Q 021569 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGA--INSETLLGRFIKERKQRDPEVEVTVATKFAA---LPWRLGRQSVLA 149 (311)
Q Consensus 75 ~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~--~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~---~~~~~~~~~i~~ 149 (311)
+.+..+|-.++..|-..+ ..|||.|... +-+++++|++-++++.- --+-++|-... ...+++++.+
T Consensus 28 ~~aa~~i~~~l~~G~Kvl----~cGNGgSaadAqHfaael~gRf~~eR~~l---paIaLt~dsS~lTai~NDy~yd~v-- 98 (176)
T COG0279 28 ERAAQLLVQSLLNGNKVL----ACGNGGSAADAQHFAAELTGRFEKERPSL---PAIALSTDSSVLTAIANDYGYDEV-- 98 (176)
T ss_pred HHHHHHHHHHHHcCCEEE----EECCCcchhhHHHHHHHHhhHHHhcCCCC---CeeEeecccHHHhhhhccccHHHH--
Confidence 567778888899998888 4688877422 35788999988876532 34555544322 1245666654
Q ss_pred HHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccceEeecCCcHHHHHHHH
Q 021569 150 ALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAY 209 (311)
Q Consensus 150 ~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~ 209 (311)
+.+..+.+|. .=|+++==.+.. ....++++++..|+.|. .-||++.-+--.+..+.
T Consensus 99 -FsRqveA~g~-~GDvLigISTSG-NS~nVl~Ai~~Ak~~gm-~vI~ltG~~GG~~~~~~ 154 (176)
T COG0279 99 -FSRQVEALGQ-PGDVLIGISTSG-NSKNVLKAIEAAKEKGM-TVIALTGKDGGKLAGLL 154 (176)
T ss_pred -HHHHHHhcCC-CCCEEEEEeCCC-CCHHHHHHHHHHHHcCC-EEEEEecCCCccccccc
Confidence 4455556664 346666554432 35678999999999985 56899988877777764
No 97
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=57.80 E-value=1.9e+02 Score=28.22 Aligned_cols=102 Identities=22% Similarity=0.137 Sum_probs=54.2
Q ss_pred HHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHHHHHHhhCCCCcceEEecCCCCC-----ChHHHHHHHH
Q 021569 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW-----GNEGFIDGLG 184 (311)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~-----~~~~~~~~l~ 184 (311)
|+-|-++|+....+.+.+-++|.|-+...--.-+-+.+.+.++ ++++ +.++.++-|... ..+.++++|-
T Consensus 106 ~~kL~~~I~e~~~~~~P~~I~V~ttC~~~lIGdDi~~v~~e~~---~~~~---~~vi~v~t~gf~g~~~~G~~~a~~al~ 179 (456)
T TIGR01283 106 EKKLFHAIREIVERYHPPAVFVYSTCVPGLIGDDLEAVCKAAA---EKTG---IPVIPVDSEGFYGSKNLGNKLACDALL 179 (456)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCChHHHhcCCHHHHHHHHH---HHhC---CCEEEEECCCCccchhHHHHHHHHHHH
Confidence 7777777776543333466788887743111223333333332 3333 678888887752 1233444444
Q ss_pred HHHH-------------cCccceEeecCC--cHHHHHHHHHHHHhcCCCee
Q 021569 185 DAVE-------------QGLVKAVGVSNY--SEKRLRNAYEKLKKRGIPLA 220 (311)
Q Consensus 185 ~l~~-------------~G~ir~iGvSn~--~~~~l~~~~~~~~~~g~~~~ 220 (311)
++.. .+.|--||-.+. +.++|+++ ++..|+++.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~VNiiG~~~~~~d~~el~~l---L~~~Gl~v~ 227 (456)
T TIGR01283 180 KHVIGTREPEPIPVGTTVHDINLIGEFNVAGEFWHVKPL---LEKLGIRVL 227 (456)
T ss_pred HHHhccCCcccccccCCCCcEEEEcCCCCcccHHHHHHH---HHHcCCeEE
Confidence 3321 356888886553 23455555 555666554
No 98
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=57.31 E-value=1.4e+02 Score=28.19 Aligned_cols=90 Identities=12% Similarity=0.053 Sum_probs=59.6
Q ss_pred EEecCCCC------------CChHHHHHHHHHHHHcC--c--cceEeec--CCcHHHHHHHHHHHHhcCCCeeeeeeccC
Q 021569 166 YQLHWAGI------------WGNEGFIDGLGDAVEQG--L--VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (311)
Q Consensus 166 ~~lH~p~~------------~~~~~~~~~l~~l~~~G--~--ir~iGvS--n~~~~~l~~~~~~~~~~g~~~~~~Q~~~~ 227 (311)
+-+|.+++ .+.+++++++.+....+ + ++++=+. |.+.++++++.+.++.. +..++=++||
T Consensus 211 iSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l--~~~vnlIPyn 288 (349)
T PRK14463 211 VSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDI--PSKVNLIPFN 288 (349)
T ss_pred EeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcc--CceEEEEecC
Confidence 55888764 23467788777766654 2 3454444 56779999998887643 4567778999
Q ss_pred cCcCC----cccc---chhHHHHHhCCeEEEcccCcc
Q 021569 228 LIYRK----PEEN---GVKAACDELGITLIAYCPIAQ 257 (311)
Q Consensus 228 ~~~~~----~~~~---~l~~~~~~~gi~v~a~spL~~ 257 (311)
++... +..+ .+.+.++++||.+......+.
T Consensus 289 ~~~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR~~~G~ 325 (349)
T PRK14463 289 EHEGCDFRSPTQEAIDRFHKYLLDKHVTVITRSSRGS 325 (349)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCc
Confidence 87532 1111 356778889999998877763
No 99
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=57.19 E-value=2e+02 Score=28.21 Aligned_cols=105 Identities=19% Similarity=0.212 Sum_probs=54.4
Q ss_pred HHHHHHHHHhccCCCC-CccEEEEeeccCCCCCCCHHHHHHHHHHHHHhhCCCCcceEEecCCCCCC---hHHH---HHH
Q 021569 110 ETLLGRFIKERKQRDP-EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG---NEGF---IDG 182 (311)
Q Consensus 110 E~~lG~al~~~~~~~~-R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~---~~~~---~~~ 182 (311)
|+-|-++|+....+.| .+-++|.|-+... .--+.+..-+++.-++.+ .+.++.+|.|+... .... ..+
T Consensus 109 e~kL~~aI~e~~~~~p~p~~I~V~stC~~~---lIGDDi~~v~~e~~~~~~--~~pvv~v~t~gf~g~s~~~G~~~a~~a 183 (457)
T TIGR01284 109 EKKLKRCILEAFREFPEIKRMYTYATCTTA---LIGDDIDAIAREVMEEIP--DVDVFAINAPGFAGPSQSKGHHVANIT 183 (457)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCChHH---hhccCHHHHHHHHHHhcC--CCeEEEeeCCCcCCcccchHHHHHHHH
Confidence 7777787776543322 2347777776321 112223333333222321 26799999887632 1222 222
Q ss_pred -HHHHH--------HcCccceEeecCCcHHHHHHHHHHHHhcCCCee
Q 021569 183 -LGDAV--------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (311)
Q Consensus 183 -l~~l~--------~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~ 220 (311)
++.++ ..++|--||-.|. +..++++...++..|+.+.
T Consensus 184 l~~~l~~~~~~~~~~~~~VNiiG~~~~-~gd~~el~~lL~~~Gl~v~ 229 (457)
T TIGR01284 184 WINDKVGTAEPEITTEYDVNLIGEYNI-QGDLWVLKKYFERMGIQVL 229 (457)
T ss_pred HHHHHhCccCcccCCCCeEEEEccCCc-hhhHHHHHHHHHHcCCeEE
Confidence 23333 2356888886554 3445556566677776653
No 100
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=56.99 E-value=3.4 Score=39.04 Aligned_cols=55 Identities=16% Similarity=0.224 Sum_probs=33.3
Q ss_pred cCccceEeecCCcHHHHHHHHHHHHhcCCCeeeeeeccCcCcCCccccchhHHHHHhCCe
Q 021569 189 QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGIT 248 (311)
Q Consensus 189 ~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~ 248 (311)
-|+|||+||--|+++++.++.+.-+ .-++.+.+..++... ....+++.+++.||+
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~----e~dly~~Q~~ifLDP-~DP~Vi~~A~k~Gip 317 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTEN----EKDLYERQLDVFLDP-HDPAVIEQARKDGIP 317 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCcc----HHHHHHHHHhhhcCC-CCHHHHHHHHHcCCc
Confidence 4999999999999999999865421 112222222222211 112477777777765
No 101
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=56.91 E-value=33 Score=29.88 Aligned_cols=74 Identities=28% Similarity=0.348 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeee
Q 021569 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN 222 (311)
Q Consensus 144 ~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~~ 222 (311)
...+.+.+++.++.+|.+. +++ .+...+.+...+.++.+..+| +..|=++..++..+...++.+...|+|+..+
T Consensus 13 ~~~~~~g~~~~a~~~g~~~-~~~---~~~~~d~~~q~~~i~~~i~~~-~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~ 86 (257)
T PF13407_consen 13 WQQVIKGAKAAAKELGYEV-EIV---FDAQNDPEEQIEQIEQAISQG-VDGIIVSPVDPDSLAPFLEKAKAAGIPVVTV 86 (257)
T ss_dssp HHHHHHHHHHHHHHHTCEE-EEE---EESTTTHHHHHHHHHHHHHTT-ESEEEEESSSTTTTHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHHHcCCEE-EEe---CCCCCCHHHHHHHHHHHHHhc-CCEEEecCCCHHHHHHHHHHHhhcCceEEEE
Confidence 4568888999999998643 332 222245678889999999888 8888888887766667667677777765553
No 102
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=56.62 E-value=1.7e+02 Score=27.19 Aligned_cols=135 Identities=19% Similarity=0.076 Sum_probs=71.0
Q ss_pred hHHHHHHHHHHHHHc-CCCeEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHH
Q 021569 73 KMKAAKAAFDTSLDN-GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (311)
Q Consensus 73 ~~~~~~~~l~~Al~~-Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~ 151 (311)
+.++..++++...+. ||+-+--+ -|.... .+..-+-+.++..........+-|.|+... ..+..+...+
T Consensus 120 ~~~e~~~~i~~i~~~~~I~~VilS--GGDPl~----~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v----~~p~rit~el 189 (321)
T TIGR03822 120 SPAELDAAFAYIADHPEIWEVILT--GGDPLV----LSPRRLGDIMARLAAIDHVKIVRFHTRVPV----ADPARVTPAL 189 (321)
T ss_pred CHHHHHHHHHHHHhCCCccEEEEe--CCCccc----CCHHHHHHHHHHHHhCCCccEEEEeCCCcc----cChhhcCHHH
Confidence 446677777766644 77644211 011100 012223333332211000134677777532 2233344444
Q ss_pred HHHHHhhCCCCcceEEecCCCC-CChHHHHHHHHHHHHcCccce----E--eecCCcHHHHHHHHHHHHhcCCCee
Q 021569 152 KDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQGLVKA----V--GVSNYSEKRLRNAYEKLKKRGIPLA 220 (311)
Q Consensus 152 ~~SL~rL~~d~iDl~~lH~p~~-~~~~~~~~~l~~l~~~G~ir~----i--GvSn~~~~~l~~~~~~~~~~g~~~~ 220 (311)
-+.|+..|. . ..+-+|...+ .-.++++++++.|++.|..-. + |+ |.+.+.+.++.+.+...|+.+-
T Consensus 190 l~~L~~~g~-~-v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gv-Nd~~~~l~~l~~~l~~~gv~py 262 (321)
T TIGR03822 190 IAALKTSGK-T-VYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGV-NDDPETLAALMRAFVECRIKPY 262 (321)
T ss_pred HHHHHHcCC-c-EEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCC-CCCHHHHHHHHHHHHhcCCeeE
Confidence 456666663 2 3466776543 225788999999999995221 1 43 6778888888877777776433
No 103
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=56.56 E-value=1.7e+02 Score=28.70 Aligned_cols=105 Identities=21% Similarity=0.246 Sum_probs=53.3
Q ss_pred HHHHHHHHHhccCCCC-CccEEEEeeccCCCCCCCHHHHHHHHHHHHHhhCCCCcceEEecCCCCCC---hHH---HHHH
Q 021569 110 ETLLGRFIKERKQRDP-EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG---NEG---FIDG 182 (311)
Q Consensus 110 E~~lG~al~~~~~~~~-R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~---~~~---~~~~ 182 (311)
|+-|-++|+....+.| .+-++|.|-+-.. .--+.+..-+++.-++. .-+.++.+|-|+... ... +.++
T Consensus 111 ~~kL~~aI~~~~~~~~~p~~I~V~tTC~~e---lIGDDi~~v~~~~~~~~--~~~~vi~v~tpgf~g~s~~~G~~~a~~~ 185 (461)
T TIGR01860 111 EKQLEKSIHEAFDEFPDIKRMIVYTTCPTA---LIGDDIKAVAKKVQKEL--PDVDIFTVECPGFAGVSQSKGHHVLNIG 185 (461)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEccCchh---hhcCCHHHHHHHHHHhc--CCCcEEEEeCCCcCCcccchHHHHHHHH
Confidence 7778888876543332 2457887766321 11122222232222222 136899999887532 112 2222
Q ss_pred H-HHHH--------HcCccceEeecCCcHHHHHHHHHHHHhcCCCee
Q 021569 183 L-GDAV--------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (311)
Q Consensus 183 l-~~l~--------~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~ 220 (311)
+ ++++ ..+.|--||-.++ +..+.++.+.++..|+++.
T Consensus 186 ~~~~~v~~~~~~~~~~~~VNiiG~~~~-~gd~~el~~lL~~~Gi~v~ 231 (461)
T TIGR01860 186 WINEKVGTLEPEITSEYTINVIGDYNI-QGDTQVLQKYWDKMGIQVI 231 (461)
T ss_pred HHHHHhcccCCCCCCCCcEEEECCCCC-cccHHHHHHHHHHcCCcEE
Confidence 1 2221 2467888885444 2334555555666777654
No 104
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=55.97 E-value=33 Score=28.91 Aligned_cols=63 Identities=24% Similarity=0.204 Sum_probs=37.9
Q ss_pred HHHHHHHHHhhCCCC----cceEEecCCCCCChHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHH
Q 021569 148 LAALKDSLFRLGLSS----VELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEK 211 (311)
Q Consensus 148 ~~~~~~SL~rL~~d~----iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~ 211 (311)
+..++..++++|.+. ++.+.-.+.......++.+.|+.|++.| ++-.-+||.+...+...++.
T Consensus 62 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~g-~~~~i~Sn~~~~~~~~~l~~ 128 (198)
T TIGR01428 62 REALRYLLGRLGLEDDESAADRLAEAYLRLPPHPDVPAGLRALKERG-YRLAILSNGSPAMLKSLVKH 128 (198)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHHH
Confidence 455666666666542 1111111111123457788899999988 55566899888877776543
No 105
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=55.86 E-value=1.8e+02 Score=27.31 Aligned_cols=85 Identities=12% Similarity=-0.013 Sum_probs=53.1
Q ss_pred ceEEecCCCCCChHHHHHHHHHHHHcCccc-eEeecCCcHHHHHHHHHHHHhcCCCeeeeeeccCcCcCCccccchhHHH
Q 021569 164 ELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAAC 242 (311)
Q Consensus 164 Dl~~lH~p~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~~~ 242 (311)
++.++-.|-+ .+-++.+.+|.++..|. ..|=|-++.+++.++++. --++++|+.....---.+-..+..+|
T Consensus 215 ~~~~iEeP~~---~~~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~-----~~~d~~~~d~~~~GGit~~~~~~~~a 286 (365)
T cd03318 215 GVELIEQPVP---RENLDGLARLRSRNRVPIMADESVSGPADAFELARR-----GAADVFSLKIAKSGGLRRAQKVAAIA 286 (365)
T ss_pred CcceeeCCCC---cccHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHh-----CCCCeEEEeecccCCHHHHHHHHHHH
Confidence 4455555532 23467788888886665 677777888888888654 13556666544321111112478899
Q ss_pred HHhCCeEEEcccCc
Q 021569 243 DELGITLIAYCPIA 256 (311)
Q Consensus 243 ~~~gi~v~a~spL~ 256 (311)
+++||.++..+-..
T Consensus 287 ~~~gi~~~~~~~~~ 300 (365)
T cd03318 287 EAAGIALYGGTMLE 300 (365)
T ss_pred HHcCCceeecCcch
Confidence 99999998654333
No 106
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=55.81 E-value=1.6e+02 Score=28.19 Aligned_cols=93 Identities=15% Similarity=0.049 Sum_probs=63.9
Q ss_pred eEEecCCCC------------CChHHHHHHHHHHH-HcCc---cceEeec--CCcHHHHHHHHHHHHhcC-CCeeeeeec
Q 021569 165 LYQLHWAGI------------WGNEGFIDGLGDAV-EQGL---VKAVGVS--NYSEKRLRNAYEKLKKRG-IPLASNQVN 225 (311)
Q Consensus 165 l~~lH~p~~------------~~~~~~~~~l~~l~-~~G~---ir~iGvS--n~~~~~l~~~~~~~~~~g-~~~~~~Q~~ 225 (311)
.+-||.+++ ++.+++++++.+.. +.|+ |+|+=+. |.+.++++++.+.++... .+..++=++
T Consensus 241 avSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIp 320 (373)
T PRK14459 241 AVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIP 320 (373)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEc
Confidence 366898875 24688899877776 4454 5666565 567788888877766431 256788999
Q ss_pred cCcCcCCccc----c---chhHHHHHhCCeEEEcccCcc
Q 021569 226 YSLIYRKPEE----N---GVKAACDELGITLIAYCPIAQ 257 (311)
Q Consensus 226 ~~~~~~~~~~----~---~l~~~~~~~gi~v~a~spL~~ 257 (311)
||++.....+ . .+.+..+++||.+......+.
T Consensus 321 yNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~ 359 (373)
T PRK14459 321 LNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQ 359 (373)
T ss_pred cCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCc
Confidence 9996542211 1 367788899999998877664
No 107
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=55.52 E-value=64 Score=29.12 Aligned_cols=103 Identities=17% Similarity=0.182 Sum_probs=53.3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCcceEEecCCCC-------CChHHHHHHHHHHHHcCccceEeecCCc---HHHHHHHH
Q 021569 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-------WGNEGFIDGLGDAVEQGLVKAVGVSNYS---EKRLRNAY 209 (311)
Q Consensus 140 ~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~-------~~~~~~~~~l~~l~~~G~ir~iGvSn~~---~~~l~~~~ 209 (311)
+.++.+... .+-+.|.++|+|+|++-+...... ....+.|+.+.++.+ +..+..+++... .+.++.+
T Consensus 15 ~~f~~~~~~-~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~a- 91 (266)
T cd07944 15 WDFGDEFVK-AIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDIDLLEPA- 91 (266)
T ss_pred ccCCHHHHH-HHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCHHHHHHH-
Confidence 345565544 445559999999999877654221 123556666655543 245555655443 3434433
Q ss_pred HHHHhcCCCeeeeeeccCcCcCCccccchhHHHHHhCCeEEE
Q 021569 210 EKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (311)
Q Consensus 210 ~~~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a 251 (311)
...+++..-+....+-+.. -.+.+++++++|+.+..
T Consensus 92 ---~~~gv~~iri~~~~~~~~~---~~~~i~~ak~~G~~v~~ 127 (266)
T cd07944 92 ---SGSVVDMIRVAFHKHEFDE---ALPLIKAIKEKGYEVFF 127 (266)
T ss_pred ---hcCCcCEEEEecccccHHH---HHHHHHHHHHCCCeEEE
Confidence 2334332222222222111 11477788888876653
No 108
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=55.52 E-value=96 Score=28.02 Aligned_cols=106 Identities=10% Similarity=-0.146 Sum_probs=56.8
Q ss_pred CCCCHHHHHHHHHHHHHhh------CCCCcceEEecCCCC--CChHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHH
Q 021569 140 WRLGRQSVLAALKDSLFRL------GLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEK 211 (311)
Q Consensus 140 ~~~~~~~i~~~~~~SL~rL------~~d~iDl~~lH~p~~--~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~ 211 (311)
..++.+.-.+..+-..+-+ ++++|-|=.+..+.. .++.|++++-+.|+++|.+- +=-+|-++-..+++.+.
T Consensus 79 Gc~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~V-lPY~~~D~v~a~rLed~ 157 (267)
T CHL00162 79 GCQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFTV-LPYINADPMLAKHLEDI 157 (267)
T ss_pred CCCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCCcccCCChHHHHHHHHHHHHCCCEE-eecCCCCHHHHHHHHHc
Confidence 3456555444444444444 566666655544443 35789999999999999764 23345555555555432
Q ss_pred HHhcCCCeeeeeeccCcCcCCcc--ccchhHH-HHHhCCeEEEc
Q 021569 212 LKKRGIPLASNQVNYSLIYRKPE--ENGVKAA-CDELGITLIAY 252 (311)
Q Consensus 212 ~~~~g~~~~~~Q~~~~~~~~~~~--~~~l~~~-~~~~gi~v~a~ 252 (311)
...+++.-=+|+-.... ....++. ++..+|.|+.-
T Consensus 158 ------Gc~aVMPlgsPIGSg~Gl~n~~~l~~i~e~~~vpVivd 195 (267)
T CHL00162 158 ------GCATVMPLGSPIGSGQGLQNLLNLQIIIENAKIPVIID 195 (267)
T ss_pred ------CCeEEeeccCcccCCCCCCCHHHHHHHHHcCCCcEEEe
Confidence 23444433333332110 0123343 34456777753
No 109
>PLN02681 proline dehydrogenase
Probab=55.30 E-value=2.2e+02 Score=28.06 Aligned_cols=171 Identities=13% Similarity=0.082 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHcCCC-eEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHHH
Q 021569 75 KAAKAAFDTSLDNGIT-FFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (311)
Q Consensus 75 ~~~~~~l~~Al~~Gi~-~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~~ 153 (311)
+...++.+.|.+.|++ +||-=+.|=...- ..+.-+..+++.....+.-|+++--.- ...+.+.+...++.
T Consensus 220 ~rl~~i~~~A~~~gv~l~IDAE~s~~q~ai------d~l~~~l~~~yN~~~~~~~V~~T~QaY---Lk~t~~~l~~~l~~ 290 (455)
T PLN02681 220 ERLQKLCERAAQLGVPLLIDAEYTSLQPAI------DYITYDLAREFNKGKDRPIVYGTYQAY---LKDARERLRLDLER 290 (455)
T ss_pred HHHHHHHHHHHHCCCEEEEeCCcccchhHH------HHHHHHHHHHhccccCCCcEEEEEeCc---cccCHHHHHHHHHH
Confidence 3466788999999998 5676554433211 344444444443100012344444432 13456777777776
Q ss_pred HHHh---hCC-----CCcce-----EEecCCCC--CChHHH----HHHHHHHHH---cCccceEeecCCcHHHHHHHHHH
Q 021569 154 SLFR---LGL-----SSVEL-----YQLHWAGI--WGNEGF----IDGLGDAVE---QGLVKAVGVSNYSEKRLRNAYEK 211 (311)
Q Consensus 154 SL~r---L~~-----d~iDl-----~~lH~p~~--~~~~~~----~~~l~~l~~---~G~ir~iGvSn~~~~~l~~~~~~ 211 (311)
..+. +|+ -|+|- -.+.||++ ...+++ -..++.|.+ .+. -++.|.+|+.+.+..+.+.
T Consensus 291 a~~~g~~~gvKLVRGAY~e~E~~~a~~~g~~~pi~~~k~~Td~~Y~~~~~~lL~~~~~~~-~~~~vATHN~~Si~~a~~~ 369 (455)
T PLN02681 291 SEREGVPLGAKLVRGAYLSLERRLAASLGVPSPVHDTIQDTHACYNRCAEFLLEKASNGD-GEVMLATHNVESGELAAAK 369 (455)
T ss_pred HHhcCCCcceEEEecCCcchhhhhHHhcCCCCCCcCCHHHHHHHHHHHHHHHhhhhccCC-eeeEEecCCHHHHHHHHHH
Confidence 6543 222 23332 11233333 122222 233444444 244 4888999999999999888
Q ss_pred HHhcCCCeeeeeeccCcCcCCccccchhHHHHHhCCeEEEcccCcc
Q 021569 212 LKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQ 257 (311)
Q Consensus 212 ~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spL~~ 257 (311)
....|+++.-.+++|-.++--.+ ++-....+.|..|.-|.|.|.
T Consensus 370 ~~~~gi~~~~~~veF~qL~GM~d--~ls~~L~~~G~~V~kYvPyG~ 413 (455)
T PLN02681 370 MNELGLHKGDPRVQFAQLLGMSD--NLSFGLGNAGFRVSKYLPYGP 413 (455)
T ss_pred HHHcCCCCCCCCEEEeccCCCCH--HHHHHHHhcCCCEEEEeeccC
Confidence 87777754433344444443222 366667778988988888874
No 110
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=55.05 E-value=38 Score=29.48 Aligned_cols=64 Identities=25% Similarity=0.263 Sum_probs=40.4
Q ss_pred HhhCCCCcceEEec-CCCCCChHHHHHHHHHHHHcCccceEeec-CCcHHHHHHHHHHHHhcCCCeeeeeecc
Q 021569 156 FRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGLVKAVGVS-NYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (311)
Q Consensus 156 ~rL~~d~iDl~~lH-~p~~~~~~~~~~~l~~l~~~G~ir~iGvS-n~~~~~l~~~~~~~~~~g~~~~~~Q~~~ 226 (311)
..+|.||+=+.+.. .|...+.+ ....+.+.. .+.+..+||. |-+++.+.++.+. ..++++|++-
T Consensus 20 ~~~Gad~iGfI~~~~S~R~V~~~-~a~~i~~~~-~~~i~~VgVf~~~~~~~i~~~~~~-----~~~d~vQLHg 85 (210)
T PRK01222 20 AELGADAIGFVFYPKSPRYVSPE-QAAELAAAL-PPFVKVVGVFVNASDEEIDEIVET-----VPLDLLQLHG 85 (210)
T ss_pred HHcCCCEEEEccCCCCCCcCCHH-HHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHh-----cCCCEEEECC
Confidence 35899999886433 23223333 333333322 3568999987 6688888887654 4688999975
No 111
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=54.90 E-value=1.7e+02 Score=27.77 Aligned_cols=88 Identities=15% Similarity=0.096 Sum_probs=59.4
Q ss_pred ecCCCC------------CChHHHHHHHHHHH-HcCc---cceEeec--CCcHHHHHHHHHHHHhcCCCeeeeeeccCcC
Q 021569 168 LHWAGI------------WGNEGFIDGLGDAV-EQGL---VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNYSLI 229 (311)
Q Consensus 168 lH~p~~------------~~~~~~~~~l~~l~-~~G~---ir~iGvS--n~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~ 229 (311)
||.+++ ++.+++++++.+.. +.|+ |+|+=+. |.+.++++++.+.++. .+..++=++||++
T Consensus 226 Lha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~--l~~~VnLIPyn~~ 303 (356)
T PRK14462 226 LHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNG--IKAKVNLILFNPH 303 (356)
T ss_pred CCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhh--cCcEEEEEeCCCC
Confidence 888875 23467888887554 4454 5666555 5578888888887664 4567888999987
Q ss_pred cCC----cccc---chhHHHHHhCCeEEEcccCcc
Q 021569 230 YRK----PEEN---GVKAACDELGITLIAYCPIAQ 257 (311)
Q Consensus 230 ~~~----~~~~---~l~~~~~~~gi~v~a~spL~~ 257 (311)
... +..+ .+.+..+++||.+......+.
T Consensus 304 ~~~~~~~ps~e~i~~f~~~l~~~gi~vtvR~~~G~ 338 (356)
T PRK14462 304 EGSKFERPSLEDMIKFQDYLNSKGLLCTIRESKGL 338 (356)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 532 1111 245567778999988876654
No 112
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=54.44 E-value=1.1e+02 Score=29.82 Aligned_cols=13 Identities=23% Similarity=0.552 Sum_probs=6.6
Q ss_pred hhHHHHHhCCeEE
Q 021569 238 VKAACDELGITLI 250 (311)
Q Consensus 238 l~~~~~~~gi~v~ 250 (311)
+...|++.||.|+
T Consensus 203 I~~icr~~~v~v~ 215 (428)
T KOG1549|consen 203 IVKICREEGVQVH 215 (428)
T ss_pred HHHHhCcCCcEEE
Confidence 5555555555443
No 113
>COG3215 PilZ Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=54.25 E-value=39 Score=25.94 Aligned_cols=70 Identities=24% Similarity=0.164 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCCCCccEEEEeecc-CCC--------------
Q 021569 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFA-ALP-------------- 139 (311)
Q Consensus 75 ~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~-~~~-------------- 139 (311)
.-....---++++|.-|+-|-..|--|+ |.++---|-..+ +++++++|+. ..|
T Consensus 20 a~LYsaYMpfl~nGglFVpTnk~y~iG~-------evfl~l~lld~p-----ekl~vagkVaWitP~gt~sr~~GiGv~f 87 (117)
T COG3215 20 ALLYSAYMPFLENGGLFVPTNKVYSIGE-------EVFLLLELLDFP-----EKLPVAGKVAWITPVGTQSRPAGIGVQF 87 (117)
T ss_pred HHHHHHHhHHHhcCcEEcccCCccccch-------hhhhhhhhcCch-----hhccccceEEEEccCCCCCCCCceeeec
Confidence 3344455556799999999999998874 666654444433 7899999973 111
Q ss_pred -CCCCHHHHHHHHHHHHH
Q 021569 140 -WRLGRQSVLAALKDSLF 156 (311)
Q Consensus 140 -~~~~~~~i~~~~~~SL~ 156 (311)
.+.....++..+|.-|.
T Consensus 88 ~d~e~g~~vr~~IE~~Lg 105 (117)
T COG3215 88 TDGENGLKVRNQIETLLG 105 (117)
T ss_pred cCCCchhhHHHHHHHHHH
Confidence 11223467777777764
No 114
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=54.11 E-value=68 Score=31.44 Aligned_cols=108 Identities=9% Similarity=0.041 Sum_probs=56.9
Q ss_pred HHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHHHHHHhhCCCCcceEEecCCCCCC-----hHHHHHHHH
Q 021569 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGLG 184 (311)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~-----~~~~~~~l~ 184 (311)
|+-|-++|+....+.+.+=++|.|-+-..--.-+-+.+.+.++....+ ...+.++.++.|+... .+.++.+|.
T Consensus 77 ~~~L~~aI~~~~~~~~P~~I~V~ttC~~eiIGDDi~~v~~~~~~~~p~--~~~~pvi~v~tpgF~g~~~~G~~~a~~al~ 154 (455)
T PRK14476 77 DENVEEAILNICKKAKPKIIGLCTTGLTETRGDDVAGALKEIRARHPE--LADTPIVYVSTPDFKGALEDGWAAAVEAIV 154 (455)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCcchHhhhhccHHHHHHHHHhhccc--cCCCeEEEecCCCCCCcHHHHHHHHHHHHH
Confidence 777777777654322235567776653211112233333333222111 1136788889887632 223333332
Q ss_pred H-HH--------HcCccceEeecCCcHHHHHHHHHHHHhcCCCe
Q 021569 185 D-AV--------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPL 219 (311)
Q Consensus 185 ~-l~--------~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~ 219 (311)
+ +. +.++|--||-+|+.+..++++.+.++..|+.+
T Consensus 155 ~~~~~~~~~~~~~~~~VNiIgg~~~~~~D~~elk~lL~~~Gl~v 198 (455)
T PRK14476 155 EALVPPASSTGRRPRQVNVLPGSHLTPGDIEELREIIEAFGLEP 198 (455)
T ss_pred HHhcccccCCCCCCCcEEEECCCCCCcccHHHHHHHHHHcCCce
Confidence 2 22 24568888777766666677766677777765
No 115
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=53.83 E-value=1.6e+02 Score=27.79 Aligned_cols=15 Identities=7% Similarity=-0.013 Sum_probs=13.5
Q ss_pred chhHHHHHhCCeEEE
Q 021569 237 GVKAACDELGITLIA 251 (311)
Q Consensus 237 ~l~~~~~~~gi~v~a 251 (311)
++++++++++|.+-.
T Consensus 237 ~ll~~l~~~~I~lEv 251 (345)
T cd01321 237 LLMDLVKKKNIAIEV 251 (345)
T ss_pred HHHHHHHHcCCeEEE
Confidence 599999999999975
No 116
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=53.78 E-value=1.3e+02 Score=27.90 Aligned_cols=95 Identities=17% Similarity=0.189 Sum_probs=66.0
Q ss_pred HHHhhCCCCcceEEecCC--CC----CChHHHHHHHHHHHHcCccc-eEeecCC---cHHHHHHHHHHHHhcCCCeeeee
Q 021569 154 SLFRLGLSSVELYQLHWA--GI----WGNEGFIDGLGDAVEQGLVK-AVGVSNY---SEKRLRNAYEKLKKRGIPLASNQ 223 (311)
Q Consensus 154 SL~rL~~d~iDl~~lH~p--~~----~~~~~~~~~l~~l~~~G~ir-~iGvSn~---~~~~l~~~~~~~~~~g~~~~~~Q 223 (311)
..+++|. |++.+|-. ++ .+.+|..+.||++.+.=+|- -||=|.. +++.++++.+.++ |-++-..-
T Consensus 159 ~Vk~fga---dmvTiHlIsTdPki~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEvaE--GeRclLaS 233 (403)
T COG2069 159 CVKKFGA---DMVTIHLISTDPKIKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAE--GERCLLAS 233 (403)
T ss_pred HHHHhCC---ceEEEEeecCCccccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhhc--CceEEeec
Confidence 3456664 66777743 22 57889999999999988774 5787865 6788888877754 33443333
Q ss_pred eccCcCcCCccccchhHHHHHhCCeEEEcccCccc
Q 021569 224 VNYSLIYRKPEENGVKAACDELGITLIAYCPIAQG 258 (311)
Q Consensus 224 ~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spL~~G 258 (311)
.+.++-+ + .+.+.+.++|=.|++|+++.-.
T Consensus 234 anldlDy---~--~ia~AA~ky~H~VLswt~~D~N 263 (403)
T COG2069 234 ANLDLDY---E--RIAEAALKYDHVVLSWTQMDVN 263 (403)
T ss_pred cccccCH---H--HHHHHHHhcCceEEEeeccChH
Confidence 3333322 2 4899999999999999998743
No 117
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=53.24 E-value=1.7e+02 Score=26.16 Aligned_cols=51 Identities=24% Similarity=0.299 Sum_probs=27.3
Q ss_pred chhHHHHHhCCeEEEcccCccccccCCCCCCCCCCCCCCCCCchHhHhhHHHHHHHHHHHHHhcCCCc
Q 021569 237 GVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTS 304 (311)
Q Consensus 237 ~l~~~~~~~gi~v~a~spL~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~ 304 (311)
..+++|++.|+..+...|-... .....+.+....+.++++.++|+++|++.
T Consensus 89 ~~i~~A~~lG~~~v~~~~g~~~-----------------~~~~~~~~~~~~~~l~~l~~~a~~~gi~l 139 (279)
T cd00019 89 DEIERCEELGIRLLVFHPGSYL-----------------GQSKEEGLKRVIEALNELIDKAETKGVVI 139 (279)
T ss_pred HHHHHHHHcCCCEEEECCCCCC-----------------CCCHHHHHHHHHHHHHHHHHhccCCCCEE
Confidence 4677888888887654331100 00122334445555566666666777643
No 118
>PRK09989 hypothetical protein; Provisional
Probab=53.07 E-value=1.5e+02 Score=26.17 Aligned_cols=52 Identities=12% Similarity=-0.029 Sum_probs=29.4
Q ss_pred chhHHHHHhCCeEEEcccCccccccCCCCCCCCCCCCCCCCCchHhHhhHHHHHHHHHHHHHhcCCCc
Q 021569 237 GVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTS 304 (311)
Q Consensus 237 ~l~~~~~~~gi~v~a~spL~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~ 304 (311)
..++.|++.|...+.-. .|.+.+ . .......+...+.++++.++|+++|+..
T Consensus 89 ~~i~~A~~lg~~~v~v~---~g~~~~---------~----~~~~~~~~~~~~~l~~l~~~a~~~gv~l 140 (258)
T PRK09989 89 LALEYALALNCEQVHVM---AGVVPA---------G----EDAERYRAVFIDNLRYAADRFAPHGKRI 140 (258)
T ss_pred HHHHHHHHhCcCEEEEC---ccCCCC---------C----CCHHHHHHHHHHHHHHHHHHHHhcCCEE
Confidence 47888999999866321 121110 0 0012233445566667788888888765
No 119
>PRK05414 urocanate hydratase; Provisional
Probab=53.04 E-value=43 Score=33.16 Aligned_cols=106 Identities=11% Similarity=0.009 Sum_probs=67.6
Q ss_pred HHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHH----------HHHHHHHHhhCCCCcceEEecCCCCCChHHH
Q 021569 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVL----------AALKDSLFRLGLSSVELYQLHWAGIWGNEGF 179 (311)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~----------~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~ 179 (311)
|.++.-+=+..... -+.++||++-+|.+..- -|..+. -.-.+.-+|+.+.|+|.+- .+.++.
T Consensus 151 eT~~~a~rk~f~g~-L~G~~~lTaGLGGMgGA-QPlA~~mag~v~i~vEvd~~ri~kR~~~gyld~~~------~~Ldea 222 (556)
T PRK05414 151 ETFAEAARQHFGGD-LAGRLVLTAGLGGMGGA-QPLAATMAGAVCLAVEVDESRIDKRLRTGYLDEKA------DDLDEA 222 (556)
T ss_pred HHHHHHHHHhcCCC-CceeEEEEecCCccccc-cHHHHHhcCceEEEEEECHHHHHHHHhCCcceeEc------CCHHHH
Confidence 55554443333322 25789999988763210 111100 1122334788999999542 367899
Q ss_pred HHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCee--eeeeccC
Q 021569 180 IDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA--SNQVNYS 227 (311)
Q Consensus 180 ~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~--~~Q~~~~ 227 (311)
++..++.+++|+..+||+-.--++.++++++ .++.|+ .-|...|
T Consensus 223 l~~~~~a~~~~~~~SIg~~GNaadv~~~l~~----~~i~pDlvtDQTSaH 268 (556)
T PRK05414 223 LALAEEAKAAGEPLSIGLLGNAADVLPELVR----RGIRPDLVTDQTSAH 268 (556)
T ss_pred HHHHHHHHHcCCceEEEEeccHHHHHHHHHH----cCCCCCccCcCcccc
Confidence 9999999999999999999887787777754 356544 4576664
No 120
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=52.81 E-value=81 Score=29.38 Aligned_cols=31 Identities=26% Similarity=0.264 Sum_probs=18.6
Q ss_pred EecCCCCCChHHHHHHHHHHHHcCccceEeec
Q 021569 167 QLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVS 198 (311)
Q Consensus 167 ~lH~p~~~~~~~~~~~l~~l~~~G~ir~iGvS 198 (311)
++|.-+..+.++-+..|+.+++.| +|++|++
T Consensus 98 ~l~~ega~~~~~dl~~L~~~~~~G-vR~lglt 128 (313)
T COG2355 98 VLHMEGAEPLGDDLDKLELFHALG-VRSLGLT 128 (313)
T ss_pred EEeccCcccccccHHHHHHHHHhC-ceEEEee
Confidence 344433345555567777777777 7776654
No 121
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=52.77 E-value=42 Score=33.11 Aligned_cols=106 Identities=11% Similarity=0.026 Sum_probs=67.5
Q ss_pred HHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHH----------HHHHHHHHhhCCCCcceEEecCCCCCChHHH
Q 021569 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVL----------AALKDSLFRLGLSSVELYQLHWAGIWGNEGF 179 (311)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~----------~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~ 179 (311)
|.++.-+=+..+.. -+.++||++-+|.+..- -|..+. -.-.+.-+|+.+.|+|.+- .+.++.
T Consensus 142 eT~~~aark~f~~~-L~G~~~lTaGLGGMgGA-QPlA~~mag~v~i~vEvd~~ri~kR~~~gyld~~~------~~ldea 213 (545)
T TIGR01228 142 ETFAELARQHFGGS-LKGKWVLTAGLGGMGGA-QPLAVTMNGGVSIAVEVDESRIDKRLETKYCDEQT------DSLDEA 213 (545)
T ss_pred HHHHHHHHHhcCCC-CceeEEEEeCCCccccc-cHHHHHHcCceEEEEEECHHHHHHHHhcCcceeEc------CCHHHH
Confidence 55554443333322 25789999888763210 111100 0122334788899998542 367899
Q ss_pred HHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCee--eeeeccC
Q 021569 180 IDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA--SNQVNYS 227 (311)
Q Consensus 180 ~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~--~~Q~~~~ 227 (311)
++..++.+++|+..+||+-.--++.++++++ .++.|+ .-|...|
T Consensus 214 l~~~~~a~~~~~~~SIg~~GNaadv~~~l~~----r~i~pDlvtDQTSaH 259 (545)
T TIGR01228 214 LARAEEAKAEGKPISIGLLGNAAEVLPELLK----RGVVPDVVTDQTSAH 259 (545)
T ss_pred HHHHHHHHHcCCceEEEeeccHHHHHHHHHH----cCCCCCCcCCCCccc
Confidence 9999999999999999999887888887754 355544 4576654
No 122
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=52.64 E-value=1.5e+02 Score=27.18 Aligned_cols=20 Identities=25% Similarity=0.227 Sum_probs=13.4
Q ss_pred chhHHHHHhCCeEEEcccCc
Q 021569 237 GVKAACDELGITLIAYCPIA 256 (311)
Q Consensus 237 ~l~~~~~~~gi~v~a~spL~ 256 (311)
+.++.+++.||.+.+..-++
T Consensus 149 ~~i~~a~~~Gi~~~s~~iiG 168 (309)
T TIGR00423 149 EVIKTAHRLGIPTTATMMFG 168 (309)
T ss_pred HHHHHHHHcCCCceeeEEec
Confidence 47778888887776544444
No 123
>PLN02444 HMP-P synthase
Probab=51.99 E-value=1.8e+02 Score=29.31 Aligned_cols=90 Identities=13% Similarity=0.197 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeee
Q 021569 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (311)
Q Consensus 142 ~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~ 221 (311)
.+.+.+.+.+++-.+ +-+|.+-||--- +.+.++.++ + |..|+-+-.-.-+....-
T Consensus 297 lt~d~~~d~ieeQae----qGVDfmTIH~Gv------~~~~v~~~~--~--R~tgIVSRGGSi~a~Wml----------- 351 (642)
T PLN02444 297 LTWEVFRETLIEQAE----QGVDYFTIHAGV------LLRYIPLTA--K--RMTGIVSRGGSIHAKWCL----------- 351 (642)
T ss_pred CCHHHHHHHHHHHHH----hCCCEEEEChhh------HHHHHHHHh--C--cccCceeCCcHHHHHHHH-----------
Confidence 344445555544444 456666677431 333444443 2 555665555444444321
Q ss_pred eeeccCcCcCCccccchhHHHHHhCCeEEEcccCccccccC
Q 021569 222 NQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTG 262 (311)
Q Consensus 222 ~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spL~~G~Ltg 262 (311)
..-.=||++...+ ++++.|++++|.+ .|+-|+=-|
T Consensus 352 ~~~kENPlYe~FD--~ileI~k~YDVtl----SLGDGLRPG 386 (642)
T PLN02444 352 AYHKENFAYEHWD--DILDICNQYDIAL----SIGDGLRPG 386 (642)
T ss_pred HcCCcCchHHHHH--HHHHHHHHhCeee----eccCCcCCC
Confidence 1123356665544 6999999999998 477776433
No 124
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=51.85 E-value=2e+02 Score=26.75 Aligned_cols=158 Identities=15% Similarity=0.134 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHcCCCeEEcCCCCCCCcC-CCCCchHHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHH
Q 021569 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRAS-FGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (311)
Q Consensus 74 ~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s-~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~ 152 (311)
.++..+.++.+++.|++.|=.--..+.... .+.....+.+ +++++.-. .++-|.-=.. ..++.+...+
T Consensus 121 ~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~~~~~~~d~~~v-~avr~~~g----~~~~l~vDan---~~~~~~~A~~--- 189 (341)
T cd03327 121 LDELPDEAKEYLKEGYRGMKMRFGYGPSDGHAGLRKNVELV-RAIREAVG----YDVDLMLDCY---MSWNLNYAIK--- 189 (341)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCCcchHHHHHHHHHH-HHHHHHhC----CCCcEEEECC---CCCCHHHHHH---
Confidence 355666777888999998754311111000 0000012223 23333221 2333332221 2355554332
Q ss_pred HHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccc-eEeecCCcHHHHHHHHHHHHhcCCCeeeeeeccCcCcC
Q 021569 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYR 231 (311)
Q Consensus 153 ~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~ 231 (311)
.+++|. ..|++++-.|-+ .+-++.+.+|.+...|. ..|=|.++..++.++++. -.++++|+.....--
T Consensus 190 -~~~~l~--~~~~~~iEeP~~---~~d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~-----~a~d~i~~d~~~~GG 258 (341)
T cd03327 190 -MARALE--KYELRWIEEPLI---PDDIEGYAELKKATGIPISTGEHEYTVYGFKRLLEG-----RAVDILQPDVNWVGG 258 (341)
T ss_pred -HHHHhh--hcCCccccCCCC---ccCHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHc-----CCCCEEecCccccCC
Confidence 223332 245556665532 23467788888887776 778888899988888653 236677766544321
Q ss_pred CccccchhHHHHHhCCeEEEcc
Q 021569 232 KPEENGVKAACDELGITLIAYC 253 (311)
Q Consensus 232 ~~~~~~l~~~~~~~gi~v~a~s 253 (311)
-.+-..+.+.|+++|+.++.++
T Consensus 259 it~~~~i~~~A~~~g~~~~~h~ 280 (341)
T cd03327 259 ITELKKIAALAEAYGVPVVPHA 280 (341)
T ss_pred HHHHHHHHHHHHHcCCeecccc
Confidence 1112258899999999988764
No 125
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=51.74 E-value=2.1e+02 Score=26.86 Aligned_cols=47 Identities=15% Similarity=0.196 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcC
Q 021569 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG 190 (311)
Q Consensus 142 ~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G 190 (311)
.+.+.|.+.+++. ...|...+.+..-+.|+ .+.+.+.+.++.++++.
T Consensus 79 l~~eeI~~~a~~~-~~~G~~~v~l~~G~~p~-~~~~~~~e~i~~Ik~~~ 125 (351)
T TIGR03700 79 MSLEEIVARVKEA-YAPGATEVHIVGGLHPN-LPFEWYLDMIRTLKEAY 125 (351)
T ss_pred CCHHHHHHHHHHH-HHCCCcEEEEecCCCCC-CCHHHHHHHHHHHHHHC
Confidence 4677777777643 55788888877655554 45667777788888775
No 126
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=51.74 E-value=1.8e+02 Score=29.32 Aligned_cols=91 Identities=10% Similarity=0.156 Sum_probs=57.5
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCee
Q 021569 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (311)
Q Consensus 141 ~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~ 220 (311)
+.+.+.+.+.+++..+ +-||.+-||--- ..+.++.++ + |..|+-+-.-.-+....-. +
T Consensus 291 ~lt~e~~~d~ieeQAe----qGVDf~TIHaGv------~~~~v~~~~--~--R~tgIVSRGGSima~Wml~---h----- 348 (607)
T PRK09284 291 DLTWEIFRDTLIEQAE----QGVDYFTIHAGV------LLRYVPLTA--K--RVTGIVSRGGSIMAKWCLA---H----- 348 (607)
T ss_pred hCCHHHHHHHHHHHHH----hCCCEEEEChhh------HHHHHHHHh--C--cccCcccCCHHHHHHHHHH---c-----
Confidence 4566777777776665 567888888532 344444444 3 7778777766655554221 1
Q ss_pred eeeeccCcCcCCccccchhHHHHHhCCeEEEcccCccccccC
Q 021569 221 SNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTG 262 (311)
Q Consensus 221 ~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spL~~G~Ltg 262 (311)
..=|+++...+ ++++.|++++|.+ .|+-|+=-|
T Consensus 349 ---~kENplYe~FD--~ileI~k~YDVtl----SLGDGLRPG 381 (607)
T PRK09284 349 ---HKENFLYTHFE--EICEIMAAYDVSF----SLGDGLRPG 381 (607)
T ss_pred ---CCcCcHHHHHH--HHHHHHHHhCeee----eccCCcCCC
Confidence 23356665443 6999999999999 477776433
No 127
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=51.70 E-value=2.3e+02 Score=27.20 Aligned_cols=82 Identities=11% Similarity=-0.030 Sum_probs=54.8
Q ss_pred ceEEecCCCCCChHHHHHHHHHHHHcCccc-eEeecCCcHHHHHHHHHHHHhcCCCeeeeeeccCcCcCCccccchhHHH
Q 021569 164 ELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAAC 242 (311)
Q Consensus 164 Dl~~lH~p~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~~~ 242 (311)
|+.++-.|-+ -++.|.+|++...+. ..|-|-++.+++.++++. --++++|......---.+-..+.+.|
T Consensus 239 ~l~~iEeP~~-----d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~-----~avdil~~d~~~~GGit~~~kia~~A 308 (395)
T cd03323 239 VLAYLEDPCG-----GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQL-----NAVDIPLADHHFWGGMRGSVRVAQVC 308 (395)
T ss_pred CCCEEECCCC-----CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHc-----CCCcEEeeccccccCHHHHHHHHHHH
Confidence 6677776643 477888888887665 667777788887777543 23667776654332111122588899
Q ss_pred HHhCCeEEEcccC
Q 021569 243 DELGITLIAYCPI 255 (311)
Q Consensus 243 ~~~gi~v~a~spL 255 (311)
+++||.+..++..
T Consensus 309 ~~~gi~~~~h~~~ 321 (395)
T cd03323 309 ETWGLGWGMHSNN 321 (395)
T ss_pred HHcCCeEEEecCc
Confidence 9999999887654
No 128
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=51.37 E-value=2.2e+02 Score=26.88 Aligned_cols=104 Identities=21% Similarity=0.232 Sum_probs=52.2
Q ss_pred HHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHHHHHHhhCCCCcceEEecCCCCC-----ChHHHHHHHH
Q 021569 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW-----GNEGFIDGLG 184 (311)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~-----~~~~~~~~l~ 184 (311)
|+++-...+...... .+-++|.|-+...--.-+.+.+.+.+++ +. -+.++.+|-+... ..+.++.+|.
T Consensus 66 e~l~~~i~~~~~~~~-p~~i~v~~tc~~~liGdDi~~v~~~~~~---~~---~~~vv~~~~~gf~~~~~~G~~~a~~~~~ 138 (399)
T cd00316 66 EKLLEAIINELKRYK-PKVIFVYTTCTTELIGDDIEAVAKEASK---EI---GIPVVPASTPGFRGSQSAGYDAAVKAII 138 (399)
T ss_pred HHHHHHHHHHHHHcC-CCEEEEecCchhhhhccCHHHHHHHHHH---hh---CCceEEeeCCCCcccHHHHHHHHHHHHH
Confidence 665555444333222 2567777776432122334444444443 22 3678888877652 1233444443
Q ss_pred HHH---------HcCccceEeecCCcHHHHHHHHHHHHhcCCCee
Q 021569 185 DAV---------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (311)
Q Consensus 185 ~l~---------~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~ 220 (311)
+.. +++.|--||.++.....+.++.+.++..|+++.
T Consensus 139 ~~~~~~~~~~~~~~~~vNlig~~~~~~~d~~el~~ll~~~G~~v~ 183 (399)
T cd00316 139 DHLVGTAEPEETEPGSVNLIGGYNLGGGDLRELKRLLEEMGIRVN 183 (399)
T ss_pred HHHhcccCcCCCCCCcEEEECCCCCchhhHHHHHHHHHHcCCcEE
Confidence 332 234578889888744333444444555565543
No 129
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=51.32 E-value=2e+02 Score=28.28 Aligned_cols=104 Identities=15% Similarity=0.116 Sum_probs=54.0
Q ss_pred HHHHHHHHHhccCCCCC-ccEEEEeeccCCCCCCCHHHHHHHHHHHHHhhCCCCcceEEecCCCCCC------hHHHHHH
Q 021569 110 ETLLGRFIKERKQRDPE-VEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG------NEGFIDG 182 (311)
Q Consensus 110 E~~lG~al~~~~~~~~R-~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~------~~~~~~~ 182 (311)
|+-|-++|+....+.+. +-++|.|-+...--.-+-+.+ +++.-+++ -++++.+|.|.... .+...++
T Consensus 116 e~kL~~aI~e~~~~~~P~~~I~V~tTC~~~lIGDDi~av---~~~~~~~~---~~pVi~v~t~gf~G~s~~~G~~~a~~a 189 (466)
T TIGR01282 116 DKKLKKAIDEIEELFPLNKGISIQSECPVGLIGDDIEAV---AKKASKEL---GKPVVPVRCEGFRGVSQSLGHHIANDA 189 (466)
T ss_pred HHHHHHHHHHHHHhCCcccEEEEeCCChHHHhccCHHHH---HHHHhhhc---CCcEEEEeCCCcCCchhhHHHHHHHHH
Confidence 77777887765443333 568888877421111223333 33333333 36889999887532 1222333
Q ss_pred HHH-HHH----------cCccceEeecCCcHHHHHHHHHHHHhcCCCee
Q 021569 183 LGD-AVE----------QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (311)
Q Consensus 183 l~~-l~~----------~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~ 220 (311)
+-+ ++. .++|--||-.|+. ..+.++..+++..|+++.
T Consensus 190 i~~~l~~~~~~~~~~~~~~~VNiiG~~~~~-gd~~eik~lL~~~Gi~v~ 237 (466)
T TIGR01282 190 VRDWVLGKGDKEKFEPTPYDVAIIGDYNIG-GDAWESRILLEEIGLRVV 237 (466)
T ss_pred HHHHhhccccccccCCCCCeEEEEecCCCc-ccHHHHHHHHHHcCCeEE
Confidence 332 221 3568888866652 333344444556666543
No 130
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=50.96 E-value=43 Score=30.68 Aligned_cols=104 Identities=16% Similarity=0.051 Sum_probs=58.2
Q ss_pred CCHHHHHHHHHHHHHhhCCCCcceEEecCCCCCC-hHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCee
Q 021569 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (311)
Q Consensus 142 ~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~-~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~ 220 (311)
++.+. +..+-+.|.++|+++|++-.++.|...| ..+.++.+..+.+...++...++ -+...++.+.+. |.+..
T Consensus 23 ~s~e~-k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~----g~~~v 96 (287)
T PRK05692 23 IPTAD-KIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAA----GADEV 96 (287)
T ss_pred cCHHH-HHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHc----CCCEE
Confidence 34443 3445566889999999997555564322 22335666666554446666655 477778777543 33322
Q ss_pred eeeeccCcC------cCCcc-----ccchhHHHHHhCCeEEE
Q 021569 221 SNQVNYSLI------YRKPE-----ENGVKAACDELGITLIA 251 (311)
Q Consensus 221 ~~Q~~~~~~------~~~~~-----~~~l~~~~~~~gi~v~a 251 (311)
.+=+..|.. .+..+ -...+++++++|+.+.+
T Consensus 97 ~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~ 138 (287)
T PRK05692 97 AVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRG 138 (287)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 111222211 11111 11488999999998864
No 131
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=50.74 E-value=58 Score=28.40 Aligned_cols=88 Identities=11% Similarity=0.034 Sum_probs=55.0
Q ss_pred cceEEecCCCCCChHHHHHHHHHHHHcCccc-eEeecCCcHHHHHHHHHHHHhcCCCeeeeeeccCcCcCCccccchhHH
Q 021569 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAA 241 (311)
Q Consensus 163 iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~~ 241 (311)
.+++++-.|-+ . +-++.+.+|.+...+. ..+=|-++.+.+.++++. -.++++|+..+..---.+-..+..+
T Consensus 120 ~~i~~iEeP~~--~-~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~-----~~~d~~~~k~~~~GGi~~~~~i~~~ 191 (229)
T cd00308 120 YGLAWIEEPCA--P-DDLEGYAALRRRTGIPIAADESVTTVDDALEALEL-----GAVDILQIKPTRVGGLTESRRAADL 191 (229)
T ss_pred cCCCeEECCCC--c-cCHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHc-----CCCCEEecCccccCCHHHHHHHHHH
Confidence 46666666643 2 2366777788887665 456666777777665432 2366677665443211111247889
Q ss_pred HHHhCCeEEEcccCccc
Q 021569 242 CDELGITLIAYCPIAQG 258 (311)
Q Consensus 242 ~~~~gi~v~a~spL~~G 258 (311)
|+++|+.++..+.+..+
T Consensus 192 a~~~gi~~~~~~~~~s~ 208 (229)
T cd00308 192 AEAFGIRVMVHGTLESS 208 (229)
T ss_pred HHHcCCEEeecCCCCCH
Confidence 99999999988776544
No 132
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=50.67 E-value=2.5e+02 Score=27.51 Aligned_cols=107 Identities=11% Similarity=0.043 Sum_probs=56.9
Q ss_pred HHHHHHHHHhccCCCC-CccEEEEeeccCCCCCCCHHHHHHHHHHHHHhhC---C--CCcceEEecCCCCCC-----hHH
Q 021569 110 ETLLGRFIKERKQRDP-EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG---L--SSVELYQLHWAGIWG-----NEG 178 (311)
Q Consensus 110 E~~lG~al~~~~~~~~-R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~rL~---~--d~iDl~~lH~p~~~~-----~~~ 178 (311)
|+-|-++|+....+.+ .+=++|.|-+... .--+.+...+++.-++++ . ..+.++.+|-|+... .+.
T Consensus 77 ~~~L~~ai~~~~~~~~~p~~i~v~ttc~~e---iiGDDi~~v~~~~~~~~~~~~~p~~~~~ii~v~tpgF~gs~~~Gy~~ 153 (461)
T TIGR02931 77 LDRVEEAVDVLLTRYPDVKVVPIITTCSTE---IIGDDVDGLISKLNEELLKEKFPDREVHLIPIHTPSFVGSMITGYDV 153 (461)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEECCchHH---hhhcCHHHHHHHHHhhhcccccCCCCCeEEEeeCCCCCCcHHHHHHH
Confidence 7777788876543322 2446677776321 112233333333333331 1 136789999887622 233
Q ss_pred HHHHHHH-HHH----cCccceEeecCCcHHHHHHHHHHHHhcCCCee
Q 021569 179 FIDGLGD-AVE----QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (311)
Q Consensus 179 ~~~~l~~-l~~----~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~ 220 (311)
++++|-+ +.. +++|--||-. .++..+.++.+.++..|+++.
T Consensus 154 a~~ali~~~~~~~~~~~~VNlig~~-~~~~D~~elk~lL~~~Gl~v~ 199 (461)
T TIGR02931 154 AVHDFVKHFAKKDKPNDKINLITGW-VNPGDVKELKHLLEEMDIEAN 199 (461)
T ss_pred HHHHHHHHHccCCCCCCcEEEECCC-CChhhHHHHHHHHHHcCCceE
Confidence 3333332 222 4668888854 345666666666777776654
No 133
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=50.55 E-value=1.3e+02 Score=27.63 Aligned_cols=97 Identities=13% Similarity=0.097 Sum_probs=57.1
Q ss_pred HHhhCCCCcceEEecC--CCCCChHHH----HHHHHHHHHcCccceEeecCCcHHHHH----HHHHHHHhcCCCeeeeee
Q 021569 155 LFRLGLSSVELYQLHW--AGIWGNEGF----IDGLGDAVEQGLVKAVGVSNYSEKRLR----NAYEKLKKRGIPLASNQV 224 (311)
Q Consensus 155 L~rL~~d~iDl~~lH~--p~~~~~~~~----~~~l~~l~~~G~ir~iGvSn~~~~~l~----~~~~~~~~~g~~~~~~Q~ 224 (311)
++-++-.++|++.+.. +.....+.. -+.+.++..+--=|++|+.+.++..-+ ++....++.| ++++
T Consensus 55 ~~~~~~~~i~~~~~~~~~~~~~~~d~~~~~~nd~~a~~~~~~pdrf~~~~~v~p~~~~~a~~E~er~v~~~g----f~g~ 130 (293)
T COG2159 55 LAFMDAAGIDLFVLSGMGEVAIIPDLRRALANDDLAALAAEYPDRFVGFARVDPRDPEAAAEELERRVRELG----FVGV 130 (293)
T ss_pred HhhhcccccceEEeeccccccchHHHhhhhhhHHHHHHHhhCCcceeeeeeeCCCchHHHHHHHHHHHHhcC----ceEE
Confidence 6778888999998884 211111211 246777777777799999998776322 3322233222 2333
Q ss_pred ccCcCcCCc----c-ccchhHHHHHhCCeEEEcccC
Q 021569 225 NYSLIYRKP----E-ENGVKAACDELGITLIAYCPI 255 (311)
Q Consensus 225 ~~~~~~~~~----~-~~~l~~~~~~~gi~v~a~spL 255 (311)
..++..+.. . -..++++|+++|+.|+-+...
T Consensus 131 ~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~ 166 (293)
T COG2159 131 KLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGA 166 (293)
T ss_pred EecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCC
Confidence 333332221 1 125899999999999875443
No 134
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=50.13 E-value=1.8e+02 Score=25.59 Aligned_cols=109 Identities=22% Similarity=0.258 Sum_probs=58.5
Q ss_pred HHHHHHHcCccceEeecC---CcHH--HHHHHHHHHHhcCCCeeeeeeccC-cCcCCccc--------cchhHHHHHhCC
Q 021569 182 GLGDAVEQGLVKAVGVSN---YSEK--RLRNAYEKLKKRGIPLASNQVNYS-LIYRKPEE--------NGVKAACDELGI 247 (311)
Q Consensus 182 ~l~~l~~~G~ir~iGvSn---~~~~--~l~~~~~~~~~~g~~~~~~Q~~~~-~~~~~~~~--------~~l~~~~~~~gi 247 (311)
.++..++.| ...+.+.. +... .+.++.+.++..|+.+...+...+ ++...... ...++.|++.|+
T Consensus 20 ~l~~~~~~G-~~gvEi~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg~ 98 (274)
T COG1082 20 ILRKAAELG-FDGVELSPGDLFPADYKELAELKELLADYGLEITSLAPFSNNLLSPDEEEREEALEELKRAIELAKELGA 98 (274)
T ss_pred HHHHHHHhC-CCeEecCCcccCCchhhhHHHHHHHHHHcCcEEEeecccCCCcCCCchhhHHHHHHHHHHHHHHHHHcCC
Confidence 344455556 55566652 2111 255555556677777777666666 44433210 027889999998
Q ss_pred eEEEcccCccccccCCCCCCCCCCCCCCCCCchHhHhhHHHHHHHHHHHHHhcCCCc
Q 021569 248 TLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTS 304 (311)
Q Consensus 248 ~v~a~spL~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~ 304 (311)
.++...+-.. .+..... . .....+...+.++++.++|+++++..
T Consensus 99 ~~vv~~~g~~---~~~~~~~-~---------~~~~~~~~~~~l~~l~~~a~~~~i~l 142 (274)
T COG1082 99 KVVVVHPGLG---AGADDPD-S---------PEEARERWAEALEELAEIAEELGIGL 142 (274)
T ss_pred CeEEeecccC---CcCCCCC-C---------CcccHHHHHHHHHHHHHHHHHhCCce
Confidence 8766544322 1111100 0 00111345667778889988887654
No 135
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=50.08 E-value=1.9e+02 Score=25.90 Aligned_cols=25 Identities=8% Similarity=0.171 Sum_probs=19.5
Q ss_pred hhhHHHHHHHHHHHHHcCCCeEEcC
Q 021569 71 DRKMKAAKAAFDTSLDNGITFFDTA 95 (311)
Q Consensus 71 ~~~~~~~~~~l~~Al~~Gi~~~DTA 95 (311)
..|.+...+.++..++.|++-|-..
T Consensus 14 ~iD~~~~~~~i~~l~~~Gv~gi~~~ 38 (281)
T cd00408 14 EVDLDALRRLVEFLIEAGVDGLVVL 38 (281)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEC
Confidence 4567888889999999998877543
No 136
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=48.84 E-value=1.8e+02 Score=25.32 Aligned_cols=136 Identities=15% Similarity=0.118 Sum_probs=81.2
Q ss_pred hhHHHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHH
Q 021569 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (311)
Q Consensus 72 ~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~ 151 (311)
.+.++..++.+.|.+.|+.-+-..+.| -....+.|+. .++-|+|=++.+....+.+.-...+
T Consensus 15 ~t~~~i~~lc~~A~~~~~~avcv~p~~-----------v~~a~~~l~~-------~~v~v~tVigFP~G~~~~~~K~~E~ 76 (211)
T TIGR00126 15 TTEEDIITLCAQAKTYKFAAVCVNPSY-----------VPLAKELLKG-------TEVRICTVVGFPLGASTTDVKLYET 76 (211)
T ss_pred CCHHHHHHHHHHHHhhCCcEEEeCHHH-----------HHHHHHHcCC-------CCCeEEEEeCCCCCCCcHHHHHHHH
Confidence 456889999999999988777665554 3344555542 4677888887532233334344445
Q ss_pred HHHHHhhCCCCcceEEecCC-CCCChHHHHHHHHHHHHc--Ccc-ce-EeecCCcHHHHHHHHHHHHhcCCCeeeeeec-
Q 021569 152 KDSLFRLGLSSVELYQLHWA-GIWGNEGFIDGLGDAVEQ--GLV-KA-VGVSNYSEKRLRNAYEKLKKRGIPLASNQVN- 225 (311)
Q Consensus 152 ~~SL~rL~~d~iDl~~lH~p-~~~~~~~~~~~l~~l~~~--G~i-r~-iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~- 225 (311)
++.++ +|.|-||+++-... .....+.+.+.|.++++. |+. +- +-.+-.+.+++.++.+.+...|. +.++..
T Consensus 77 ~~Av~-~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia~eaGA--DfvKTsT 153 (211)
T TIGR00126 77 KEAIK-YGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEICIDAGA--DFVKTST 153 (211)
T ss_pred HHHHH-cCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCC--CEEEeCC
Confidence 55444 79999998776432 112345666666666654 432 22 22233455777777777666554 444444
Q ss_pred -cCc
Q 021569 226 -YSL 228 (311)
Q Consensus 226 -~~~ 228 (311)
|.+
T Consensus 154 Gf~~ 157 (211)
T TIGR00126 154 GFGA 157 (211)
T ss_pred CCCC
Confidence 553
No 137
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=48.65 E-value=1.9e+02 Score=27.35 Aligned_cols=97 Identities=15% Similarity=0.189 Sum_probs=62.4
Q ss_pred CCcceEE-ecCCCC------------CChHHHHHHHHHHHH-cCc---cceEeec--CCcHHHHHHHHHHHHhc---CCC
Q 021569 161 SSVELYQ-LHWAGI------------WGNEGFIDGLGDAVE-QGL---VKAVGVS--NYSEKRLRNAYEKLKKR---GIP 218 (311)
Q Consensus 161 d~iDl~~-lH~p~~------------~~~~~~~~~l~~l~~-~G~---ir~iGvS--n~~~~~l~~~~~~~~~~---g~~ 218 (311)
.++||.+ ||.++. .+.+++++++.+..+ .|. |+++=+- |.+.++++++.+.++.. +..
T Consensus 203 ~~v~LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~~~~~V~iry~LI~GvNDs~e~a~~L~~~lk~l~~~~~~ 282 (347)
T PRK14453 203 PQVNLTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRHTGRKVYIAYIMLEGVNDSKEHAEAVVGLLRNRGSWEHL 282 (347)
T ss_pred cCcCEEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEEeECCCCCCHHHHHHHHHHHhhccccCCc
Confidence 4688754 787753 235666666655554 443 3444443 66788999998887754 224
Q ss_pred eeeeeeccCcCcCCc------cc---cchhHHHHHhCCeEEEcccCcc
Q 021569 219 LASNQVNYSLIYRKP------EE---NGVKAACDELGITLIAYCPIAQ 257 (311)
Q Consensus 219 ~~~~Q~~~~~~~~~~------~~---~~l~~~~~~~gi~v~a~spL~~ 257 (311)
..++=++||++.... .. ..+.++.+++|+.+......+.
T Consensus 283 ~~VnLIPyn~~~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~~G~ 330 (347)
T PRK14453 283 YHVNLIPYNSTDKTPFKFQSSSAGQIKQFCSTLKSAGISVTVRTQFGS 330 (347)
T ss_pred ceEEEecCCCCCCCCccCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 568888999874321 11 1367778888999988777664
No 138
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=48.30 E-value=73 Score=29.94 Aligned_cols=59 Identities=14% Similarity=0.304 Sum_probs=29.8
Q ss_pred EeecCCcHHHHHHHHHHHHhcCCCeeee--------------eeccCcCcCCccc---cchhHHHHHhCCeEEEcccCc
Q 021569 195 VGVSNYSEKRLRNAYEKLKKRGIPLASN--------------QVNYSLIYRKPEE---NGVKAACDELGITLIAYCPIA 256 (311)
Q Consensus 195 iGvSn~~~~~l~~~~~~~~~~g~~~~~~--------------Q~~~~~~~~~~~~---~~l~~~~~~~gi~v~a~spL~ 256 (311)
+--++|++++..++ +++.|.+..+. ...||..+..... .++.+.|+++||.+-.|-...
T Consensus 86 F~p~~fD~dqW~~~---ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~~ 161 (346)
T PF01120_consen 86 FNPTKFDADQWAKL---AKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSPW 161 (346)
T ss_dssp ---TT--HHHHHHH---HHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEESS
T ss_pred CCcccCCHHHHHHH---HHHcCCCEEEeehhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecch
Confidence 33456666666666 44444443332 3344444332222 168999999999998775544
No 139
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=47.74 E-value=1.8e+02 Score=27.42 Aligned_cols=91 Identities=15% Similarity=0.091 Sum_probs=61.9
Q ss_pred eEEecCCCC------------CChHHHHHHHHHHHHcC--c--cceEeec--CCcHHHHHHHHHHHHhcCCCeeeeeecc
Q 021569 165 LYQLHWAGI------------WGNEGFIDGLGDAVEQG--L--VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (311)
Q Consensus 165 l~~lH~p~~------------~~~~~~~~~l~~l~~~G--~--ir~iGvS--n~~~~~l~~~~~~~~~~g~~~~~~Q~~~ 226 (311)
.+-||.|+. ++.+++++++.+..+.. + +-|+=+. |.+.+++.++.+.++ +.+..++=++|
T Consensus 210 avSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~--~~~~~VNLIp~ 287 (345)
T PRK14466 210 AISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIVFKGLNDSLKHAKELVKLLR--GIDCRVNLIRF 287 (345)
T ss_pred EEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEEeCCCCCCHHHHHHHHHHHc--CCCceEEEEec
Confidence 477898764 34678888888865442 3 2344443 778888999988775 45677888999
Q ss_pred CcCcCC----ccc---cchhHHHHHhCCeEEEcccCcc
Q 021569 227 SLIYRK----PEE---NGVKAACDELGITLIAYCPIAQ 257 (311)
Q Consensus 227 ~~~~~~----~~~---~~l~~~~~~~gi~v~a~spL~~ 257 (311)
|+.... +.. +...+..+++||.+......+.
T Consensus 288 Np~~~~~~~~~s~~~~~~F~~~L~~~gi~~tvR~s~G~ 325 (345)
T PRK14466 288 HAIPGVDLEGSDMARMEAFRDYLTSHGVFTTIRASRGE 325 (345)
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 975331 111 1356778889999998877664
No 140
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=47.49 E-value=2.7e+02 Score=26.92 Aligned_cols=151 Identities=11% Similarity=0.076 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHHHH
Q 021569 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (311)
Q Consensus 75 ~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~~S 154 (311)
++..+..+.+++.|++.|=.-- |.... ...+.+ +++++.-. +++.|.-=.. ..++.+...+.+
T Consensus 198 ~~~~~~a~~~~~~Gf~~~KiKv--g~~~~----~d~~~v-~avRe~vG----~~~~L~vDaN---~~w~~~~A~~~~--- 260 (415)
T cd03324 198 EKLRRLCKEALAQGFTHFKLKV--GADLE----DDIRRC-RLAREVIG----PDNKLMIDAN---QRWDVPEAIEWV--- 260 (415)
T ss_pred HHHHHHHHHHHHcCCCEEEEeC--CCCHH----HHHHHH-HHHHHhcC----CCCeEEEECC---CCCCHHHHHHHH---
Confidence 4555666777788999875421 11000 001222 33433221 2333333321 235555433333
Q ss_pred HHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcC----ccceEeecCCcHHHHHHHHHHHHhcCCCeeeeeeccCcCc
Q 021569 155 LFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG----LVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIY 230 (311)
Q Consensus 155 L~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G----~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~ 230 (311)
++| +-+++.++-.|-+ .+-++.+.+|++.- .=-..|=|.++.+.+.++++. --++++|....-.-
T Consensus 261 -~~L--~~~~l~~iEEP~~---~~d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~-----~a~dil~~d~~~~G 329 (415)
T cd03324 261 -KQL--AEFKPWWIEEPTS---PDDILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQA-----GAIDVVQIDSCRLG 329 (415)
T ss_pred -HHh--hccCCCEEECCCC---CCcHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHc-----CCCCEEEeCccccC
Confidence 333 2345666766643 22456667777664 333567777888888888643 23677777655432
Q ss_pred CCccccchhHHHHHhCCeEEEcc
Q 021569 231 RKPEENGVKAACDELGITLIAYC 253 (311)
Q Consensus 231 ~~~~~~~l~~~~~~~gi~v~a~s 253 (311)
--.+...+...|+++|+.+..++
T Consensus 330 Git~~~kia~lA~a~gi~~~pH~ 352 (415)
T cd03324 330 GVNENLAVLLMAAKFGVPVCPHA 352 (415)
T ss_pred CHHHHHHHHHHHHHcCCeEEEcC
Confidence 11122258899999999998774
No 141
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=47.46 E-value=95 Score=25.25 Aligned_cols=61 Identities=11% Similarity=0.148 Sum_probs=42.2
Q ss_pred CccEEEEeeccCCCCCCCHHHHHHHHHHHHHhhC--CCCcceEEecCCCC-CChHHHHHHHHHHHHc
Q 021569 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG--LSSVELYQLHWAGI-WGNEGFIDGLGDAVEQ 189 (311)
Q Consensus 126 R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~rL~--~d~iDl~~lH~p~~-~~~~~~~~~l~~l~~~ 189 (311)
|=-+.|+-|++. -..+..|++.+.++.+.+. ....|++++..... .+.++....|..+.++
T Consensus 47 RlG~sVSKKvg~---AV~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~~~f~~L~~~l~~~~~~ 110 (138)
T PRK00730 47 KVGITVSKKFGK---AHQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQPDFLKLLQDFLQQIPE 110 (138)
T ss_pred eEEEEEeccccc---chhHHHHHHHHHHHHHHhhcccCCceEEEEeccccCCCHHHHHHHHHHHHHH
Confidence 567888888864 4567788888888887663 35689999998764 4455555555554443
No 142
>PRK05985 cytosine deaminase; Provisional
Probab=47.18 E-value=2.5e+02 Score=26.48 Aligned_cols=19 Identities=21% Similarity=0.123 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHcCCCeEE
Q 021569 75 KAAKAAFDTSLDNGITFFD 93 (311)
Q Consensus 75 ~~~~~~l~~Al~~Gi~~~D 93 (311)
..+...+..++..|++++-
T Consensus 98 ~~a~~~~~~~l~~G~t~vr 116 (391)
T PRK05985 98 ERALALARAAAAAGTTAMR 116 (391)
T ss_pred HHHHHHHHHHHhcCcceEE
Confidence 4466778999999999873
No 143
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=46.82 E-value=1.8e+02 Score=25.44 Aligned_cols=52 Identities=15% Similarity=0.034 Sum_probs=30.2
Q ss_pred chhHHHHHhCCeEEEcccCccccccCCCCCCCCCCCCCCCCCchHhHhhHHHHHHHHHHHHHhcCCCc
Q 021569 237 GVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTS 304 (311)
Q Consensus 237 ~l~~~~~~~gi~v~a~spL~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~ 304 (311)
..+++|++.|...+.-. .|...+ .....+..+...+.++++.++|+++|+..
T Consensus 88 ~~i~~a~~lg~~~i~~~---~g~~~~-------------~~~~~~~~~~~~~~l~~l~~~A~~~gi~l 139 (254)
T TIGR03234 88 LAIAYARALGCPQVNCL---AGKRPA-------------GVSPEEARATLVENLRYAADALDRIGLTL 139 (254)
T ss_pred HHHHHHHHhCCCEEEEC---cCCCCC-------------CCCHHHHHHHHHHHHHHHHHHHHhcCCEE
Confidence 37889999999877421 121100 00112333445566677778888888754
No 144
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=46.41 E-value=2.1e+02 Score=28.22 Aligned_cols=104 Identities=18% Similarity=0.132 Sum_probs=54.5
Q ss_pred HHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHHHHHHhhCCCCcceEEecCCCCC-----ChHHHHHHHH
Q 021569 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW-----GNEGFIDGLG 184 (311)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~-----~~~~~~~~l~ 184 (311)
|+-|-++|.....+.+.+=++|.|-+...--.-+-+.+.+.++ ++++ +.++.+|-+... ..+..+++|-
T Consensus 104 ~~kL~~~I~ei~~~~~P~~I~V~tTC~~~lIGdDi~~v~~~~~---~~~~---~pvi~v~t~Gf~g~~~~G~~~a~~al~ 177 (475)
T PRK14478 104 EKKLFKAIDEIIEKYAPPAVFVYQTCVVALIGDDIDAVCKRAA---EKFG---IPVIPVNSPGFVGNKNLGNKLAGEALL 177 (475)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCChHHHhccCHHHHHHHHH---HhhC---CCEEEEECCCcccchhhhHHHHHHHHH
Confidence 7777777766543322356777777643111223333333333 3343 678888877652 2333344443
Q ss_pred H-HH--------HcCccceEeecCCcHHHHHHHHHHHHhcCCCee
Q 021569 185 D-AV--------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (311)
Q Consensus 185 ~-l~--------~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~ 220 (311)
+ ++ +.+.|--||-.++.. .+.++.+.++..|+++.
T Consensus 178 ~~l~~~~~~~~~~~~~VNiiG~~~~~g-d~~elk~lL~~~Gl~v~ 221 (475)
T PRK14478 178 DHVIGTVEPEDTTPYDINILGEYNLAG-ELWQVKPLLDRLGIRVV 221 (475)
T ss_pred HHHhccCCccCCCCCeEEEEeCCCCCC-CHHHHHHHHHHcCCeEE
Confidence 2 33 235688888666542 33334444555666544
No 145
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=46.23 E-value=68 Score=30.27 Aligned_cols=84 Identities=11% Similarity=-0.052 Sum_probs=56.6
Q ss_pred cceEEecCCCCCChHHHHHHHHHHHHcCccc-eEeecCCcHHHHHHHHHHHHhcCCCeeeeeeccCcCcCCccccchhHH
Q 021569 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAA 241 (311)
Q Consensus 163 iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~~ 241 (311)
++++++-.|-+ .+-++.+.+|.+...+. ..|=|-++...+..++.. --++++|+.....---.+-..+.+.
T Consensus 189 ~~l~~iEeP~~---~~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~-----~a~di~~~d~~~~GGit~~~~ia~~ 260 (361)
T cd03322 189 YRLFWMEDPTP---AENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQE-----RLIDYIRTTVSHAGGITPARKIADL 260 (361)
T ss_pred cCCCEEECCCC---cccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHh-----CCCCEEecCccccCCHHHHHHHHHH
Confidence 46666766642 23377788888887775 778888898988888654 2366777765543211112258899
Q ss_pred HHHhCCeEEEccc
Q 021569 242 CDELGITLIAYCP 254 (311)
Q Consensus 242 ~~~~gi~v~a~sp 254 (311)
|+++||.++.++.
T Consensus 261 A~~~gi~~~~h~~ 273 (361)
T cd03322 261 ASLYGVRTGWHGP 273 (361)
T ss_pred HHHcCCeeeccCC
Confidence 9999999987643
No 146
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=45.94 E-value=75 Score=30.87 Aligned_cols=69 Identities=16% Similarity=0.217 Sum_probs=50.1
Q ss_pred HHHHHHcCccceEeecCCcHHHHHHHHHHHHhc---CCCeeeeeeccCcCcCCccccchhHHHHHhCCeEEEcc
Q 021569 183 LGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKR---GIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYC 253 (311)
Q Consensus 183 l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~---g~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~s 253 (311)
...+-+.|-+..+|..+.+++++++.+..++.. +-++-+|-+ +++-++.. +.++++.|.++||.++..+
T Consensus 31 VaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~~~~~~-e~~~v~l~le~gV~~ve~s 102 (418)
T cd04742 31 VVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSPDEPEL-EEGLVDLFLRHGVRVVEAS 102 (418)
T ss_pred HHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCCCCchh-HHHHHHHHHHcCCCEEEec
Confidence 344568899999999999999999999888763 346776654 33332222 2358999999999877554
No 147
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=45.39 E-value=1e+02 Score=27.55 Aligned_cols=102 Identities=17% Similarity=0.089 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHHHHHhhCCCCcceEEecCCC-----C-CChHHHHHHHHHHHHc-CccceEeec---CCcHHHHHHHHHH
Q 021569 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAG-----I-WGNEGFIDGLGDAVEQ-GLVKAVGVS---NYSEKRLRNAYEK 211 (311)
Q Consensus 142 ~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~-----~-~~~~~~~~~l~~l~~~-G~ir~iGvS---n~~~~~l~~~~~~ 211 (311)
++.+...+ +-+.|.++|+++|++-+..... . .+....++.++.+++. +.++...++ ..+.+.++.+.
T Consensus 19 ~~~~~k~~-i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~-- 95 (263)
T cd07943 19 FTLEQVRA-IARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAA-- 95 (263)
T ss_pred cCHHHHHH-HHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHH--
Confidence 44444444 4444777888888886542211 0 1112234555555333 335555554 22344444443
Q ss_pred HHhcCCCeeeeeeccCcCcCCccccchhHHHHHhCCeEEE
Q 021569 212 LKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (311)
Q Consensus 212 ~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a 251 (311)
..|++ .+.+.++.-+-. .-.+.+++++++|+.+..
T Consensus 96 --~~g~~--~iri~~~~s~~~-~~~~~i~~ak~~G~~v~~ 130 (263)
T cd07943 96 --DLGVD--VVRVATHCTEAD-VSEQHIGAARKLGMDVVG 130 (263)
T ss_pred --HcCCC--EEEEEechhhHH-HHHHHHHHHHHCCCeEEE
Confidence 23332 222222211111 112477777788876654
No 148
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=45.24 E-value=1.3e+02 Score=32.52 Aligned_cols=105 Identities=10% Similarity=0.030 Sum_probs=60.3
Q ss_pred HHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHHHHHHhhCC-----CCcceEEecCCCCCC-----hHHH
Q 021569 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL-----SSVELYQLHWAGIWG-----NEGF 179 (311)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~rL~~-----d~iDl~~lH~p~~~~-----~~~~ 179 (311)
|+-|-++|+....+.+.+=++|.|-+.. +-|=+.++..++++.- .-+.++.++-|+... .+.+
T Consensus 556 ~~~L~~~I~~~~~~~~p~~I~V~tTc~~-------eiIGDDi~~vi~~~~~~~~~~~~~pvi~v~tpgF~Gs~~~G~~~a 628 (917)
T PRK14477 556 WENLKQGILRVIEKFKPKVIGVMTTGLT-------ETMGDDVRSAIVQFREEHPELDDVPVVWASTPDYCGSLQEGYAAA 628 (917)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCchH-------hhhhcCHHHHHHHHHhhccccCCCeEEEeeCCCCccCHHHHHHHH
Confidence 6677777765432222466788887742 2222223333332321 236899999988632 2233
Q ss_pred HHHHH-HHH-----HcCccceEeecCCcHHHHHHHHHHHHhcCCCeee
Q 021569 180 IDGLG-DAV-----EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (311)
Q Consensus 180 ~~~l~-~l~-----~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~ 221 (311)
+++|- .+. ..++|--||-+|.++..++++.+.++..|+++.+
T Consensus 629 ~~aiv~~~~~~~~~~~~~VNli~~~~~~~gD~~eik~lL~~~Gl~v~~ 676 (917)
T PRK14477 629 VEAIVATLPEPGERIPGQVNILPGAHLTPADVEEIKEIVEAFGLDPVV 676 (917)
T ss_pred HHHHHHHhccccCCCCCcEEEeCCCCCChhhHHHHHHHHHHcCCceEE
Confidence 33332 222 3467888887777677777777778888876644
No 149
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=44.81 E-value=95 Score=28.02 Aligned_cols=66 Identities=21% Similarity=0.366 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHHHH
Q 021569 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (311)
Q Consensus 75 ~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~~S 154 (311)
.-+..-...|+++|+++|||+ .+|.|...|+...|.++- .|+... - ..++.+.+.+..++-
T Consensus 195 Gla~AN~laA~~aGa~~vd~s-~~G~G~~aGN~~~E~~v~-~l~~~~----------~-------~~~dl~~l~~~~~~~ 255 (266)
T cd07944 195 QLALANTLEAIELGVEIIDAT-VYGMGRGAGNLPTELLLD-YLNNKF----------G-------KKYNLEPVLELIDEY 255 (266)
T ss_pred cHHHHHHHHHHHcCCCEEEEe-cccCCCCcCcHHHHHHHH-HHHHhh----------c-------cCCCHHHHHHHHHHH
Confidence 445666778899999999998 567777666666777763 343321 1 135566677766666
Q ss_pred HHhhC
Q 021569 155 LFRLG 159 (311)
Q Consensus 155 L~rL~ 159 (311)
++.+.
T Consensus 256 ~~~~~ 260 (266)
T cd07944 256 IAPLK 260 (266)
T ss_pred HHHHH
Confidence 66554
No 150
>PLN02428 lipoic acid synthase
Probab=44.67 E-value=1.3e+02 Score=28.39 Aligned_cols=81 Identities=17% Similarity=0.288 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHHc--Cccc----eEeecCCcHHHHHHHHHHHHhcCCCee---------eeeeccCcCcCCccccchhH
Q 021569 176 NEGFIDGLGDAVEQ--GLVK----AVGVSNYSEKRLRNAYEKLKKRGIPLA---------SNQVNYSLIYRKPEENGVKA 240 (311)
Q Consensus 176 ~~~~~~~l~~l~~~--G~ir----~iGvSn~~~~~l~~~~~~~~~~g~~~~---------~~Q~~~~~~~~~~~~~~l~~ 240 (311)
.++.++.|+.+++. |..- -+|+ .=+.+++.+.++.+++.++... -..++.+.+....+.+.+-+
T Consensus 230 ye~~Le~L~~ak~~~pGi~tkSg~MvGL-GET~Edv~e~l~~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~ 308 (349)
T PLN02428 230 YKQSLDVLKHAKESKPGLLTKTSIMLGL-GETDEEVVQTMEDLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWRE 308 (349)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEeEEEec-CCCHHHHHHHHHHHHHcCCCEEeeccccCCCcceeeeecccCHHHHHHHHH
Confidence 56788999999988 7653 2667 5678888888888877764322 22334444444333345777
Q ss_pred HHHHhCCeEEEcccCcc
Q 021569 241 ACDELGITLIAYCPIAQ 257 (311)
Q Consensus 241 ~~~~~gi~v~a~spL~~ 257 (311)
++.+.|...++-+||-.
T Consensus 309 ~~~~~gf~~v~sgp~vr 325 (349)
T PLN02428 309 YGEEMGFRYVASGPLVR 325 (349)
T ss_pred HHHHcCCceEEecCccc
Confidence 88888999998888874
No 151
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=44.66 E-value=2e+02 Score=24.56 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHcCCCeEE
Q 021569 73 KMKAAKAAFDTSLDNGITFFD 93 (311)
Q Consensus 73 ~~~~~~~~l~~Al~~Gi~~~D 93 (311)
|.+++.++++.+++.|+...|
T Consensus 9 D~~~~~~~v~~~l~~g~~~~~ 29 (201)
T cd02070 9 DEEETVELVKKALEAGIDPQD 29 (201)
T ss_pred CHHHHHHHHHHHHHcCCCHHH
Confidence 457889999999999976554
No 152
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=44.54 E-value=2.7e+02 Score=26.09 Aligned_cols=17 Identities=6% Similarity=-0.001 Sum_probs=11.9
Q ss_pred HHHHHHHHHcCCCeEEc
Q 021569 78 KAAFDTSLDNGITFFDT 94 (311)
Q Consensus 78 ~~~l~~Al~~Gi~~~DT 94 (311)
.+.-+.|.++|+..++-
T Consensus 140 ~~aA~~a~~aGfDgVei 156 (353)
T cd02930 140 ARCAALAREAGYDGVEI 156 (353)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 33445567899998886
No 153
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=44.50 E-value=77 Score=31.45 Aligned_cols=91 Identities=11% Similarity=0.034 Sum_probs=53.3
Q ss_pred CccEEEEeeccCCCCCCCHHHH----------HHHHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccceE
Q 021569 126 EVEVTVATKFAALPWRLGRQSV----------LAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAV 195 (311)
Q Consensus 126 R~~~~I~tK~~~~~~~~~~~~i----------~~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir~i 195 (311)
+.++||++-+|..... -|..+ +-.-++.-+|+.+.|+|.+- .+.++.++..++.+++|+..+|
T Consensus 156 ~Gk~~lTaGLGGMgGA-QplA~~m~g~v~l~vEvd~~ri~kR~~~g~ld~~~------~~ldea~~~~~ea~~~~~~~SI 228 (546)
T PF01175_consen 156 AGKLFLTAGLGGMGGA-QPLAATMAGGVGLIVEVDPSRIEKRLEQGYLDEVT------DDLDEALARAKEARAKKEPLSI 228 (546)
T ss_dssp TT-EEEEE--STTCCH-HHHHHHHTT-EEEEEES-HHHHHHHHHTTSSSEEE------SSHHHHHHHHHHHHHTT--EEE
T ss_pred cceEEEEecccccccc-hHHHHHhcCceEEEEEECHHHHHHHHhCCCeeEEc------CCHHHHHHHHHHhhccCCeeEE
Confidence 5789999998763210 01000 01123344788889999643 3578999999999999999999
Q ss_pred eecCCcHHHHHHHHHHHHhcCCC--eeeeeeccC
Q 021569 196 GVSNYSEKRLRNAYEKLKKRGIP--LASNQVNYS 227 (311)
Q Consensus 196 GvSn~~~~~l~~~~~~~~~~g~~--~~~~Q~~~~ 227 (311)
|+-.--.+.++++++ .++. +..-|...|
T Consensus 229 g~~GN~ad~~~~l~~----~~i~pDl~tDQTS~H 258 (546)
T PF01175_consen 229 GLLGNAADLWEELVE----RGIIPDLVTDQTSAH 258 (546)
T ss_dssp EEES-HHHHHHHHHH----TT---SEE---SSTT
T ss_pred EEeccHHHHHHHHHH----cCCCCCcccCCCccc
Confidence 998887777777743 3554 445677764
No 154
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=44.35 E-value=2.4e+02 Score=25.34 Aligned_cols=107 Identities=17% Similarity=0.118 Sum_probs=56.3
Q ss_pred HHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCCCCccEEEEeeccCCCCC--------CCHHHHHHH
Q 021569 79 AAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWR--------LGRQSVLAA 150 (311)
Q Consensus 79 ~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~--------~~~~~i~~~ 150 (311)
+++++|++.|..+|..-..- +. ...+-+.+++++ -.+++...-+. |.. .-.+.+.+.
T Consensus 87 ~v~e~al~~G~~iINdisg~-~~--------~~~~~~l~~~~~-----~~vV~m~~~g~-p~~~~~~~~~~~~~~~~~~~ 151 (257)
T cd00739 87 EVARAALEAGADIINDVSGG-SD--------DPAMLEVAAEYG-----APLVLMHMRGT-PKTMQENPYYEDVVDEVLSF 151 (257)
T ss_pred HHHHHHHHhCCCEEEeCCCC-CC--------ChHHHHHHHHcC-----CCEEEECCCCC-CcccccCCCcccHHHHHHHH
Confidence 35777888887777643222 10 123346666664 35666443321 111 012345455
Q ss_pred HHHHHH---hhCCC----CcceEEecCCCC-CChHHHHHHHHHHHHcCccceEeecCCc
Q 021569 151 LKDSLF---RLGLS----SVELYQLHWAGI-WGNEGFIDGLGDAVEQGLVKAVGVSNYS 201 (311)
Q Consensus 151 ~~~SL~---rL~~d----~iDl~~lH~p~~-~~~~~~~~~l~~l~~~G~ir~iGvSn~~ 201 (311)
+++.++ +.|++ ++|-..- .... ...-++++.+..+++.|.=-.+|+||-+
T Consensus 152 ~~~~i~~~~~~Gi~~~~Ii~DPg~g-f~ks~~~~~~~l~~i~~l~~~~~pil~G~SrkS 209 (257)
T cd00739 152 LEARLEAAESAGVARNRIILDPGIG-FGKTPEHNLELLRRLDELKQLGLPVLVGASRKS 209 (257)
T ss_pred HHHHHHHHHHcCCCHHHEEEecCCC-cccCHHHHHHHHHHHHHHHhCCCcEEEEecccH
Confidence 554444 45665 3343110 0000 1134568888888888877789999964
No 155
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=44.11 E-value=1.2e+02 Score=28.64 Aligned_cols=82 Identities=13% Similarity=0.068 Sum_probs=55.6
Q ss_pred CChHHHHHHHHHHHHc-Cc---cceEee--cCCcHHHHHHHHHHHHhcCCCeeeeeeccCcCcCCccc-------cchhH
Q 021569 174 WGNEGFIDGLGDAVEQ-GL---VKAVGV--SNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE-------NGVKA 240 (311)
Q Consensus 174 ~~~~~~~~~l~~l~~~-G~---ir~iGv--Sn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~~~-------~~l~~ 240 (311)
++.+++.+++.+..+. |+ +-|+=+ -|.++++++++.+.++ +.++.++-++||+....... ..+.+
T Consensus 223 ~~l~el~~a~~~~~~~~grri~~EyvLl~GVNDs~e~a~~L~~~l~--~~~~~vNLIPyN~v~g~~~~rp~~~~i~~f~~ 300 (344)
T PRK14464 223 IAPEELVELGEAYARATGYPIQYQWTLLEGVNDSDEEMDGIVRLLK--GKYAVMNLIPYNSVDGDAYRRPSGERIVAMAR 300 (344)
T ss_pred CCHHHHHHHHHHHHHHHCCEEEEEEEEeCCCCCCHHHHHHHHHHHh--ccccccceecCCccCCCCccCCCHHHHHHHHH
Confidence 4678888888776544 42 133322 3778999999887764 35678888999885432211 14677
Q ss_pred HHHHhCCeEEEcccCcc
Q 021569 241 ACDELGITLIAYCPIAQ 257 (311)
Q Consensus 241 ~~~~~gi~v~a~spL~~ 257 (311)
..+++||.+......+.
T Consensus 301 ~L~~~gi~~tiR~~~G~ 317 (344)
T PRK14464 301 YLHRRGVLTKVRNSAGQ 317 (344)
T ss_pred HHHHCCceEEEECCCCC
Confidence 78889999998877764
No 156
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=44.09 E-value=1.2e+02 Score=28.56 Aligned_cols=105 Identities=18% Similarity=0.196 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCcce---------EEecCCCCCChHHHHHHHHHHHHcCccceEee-cCCcHHHHHHHH
Q 021569 140 WRLGRQSVLAALKDSLFRLGLSSVEL---------YQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGV-SNYSEKRLRNAY 209 (311)
Q Consensus 140 ~~~~~~~i~~~~~~SL~rL~~d~iDl---------~~lH~p~~~~~~~~~~~l~~l~~~G~ir~iGv-Sn~~~~~l~~~~ 209 (311)
+.++.+.+.+-++. |.+.|+++|.+ -+-..+...+..+.++.+.+.+..-++..+-+ ...+.+.++.+.
T Consensus 20 ~~f~~~~~~~i~~~-L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~ 98 (337)
T PRK08195 20 HQYTLEQVRAIARA-LDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLLPGIGTVDDLKMAY 98 (337)
T ss_pred CccCHHHHHHHHHH-HHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEeccCcccHHHHHHHH
Q ss_pred HHHHhcCCCeeeeeeccCcCcCCccccchhHHHHHhCCeEEEc
Q 021569 210 EKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAY 252 (311)
Q Consensus 210 ~~~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~ 252 (311)
+. .++.+.+..+.-.-..... .+++++++|..+..+
T Consensus 99 ~~------gvd~iri~~~~~e~~~~~~-~i~~ak~~G~~v~~~ 134 (337)
T PRK08195 99 DA------GVRVVRVATHCTEADVSEQ-HIGLARELGMDTVGF 134 (337)
T ss_pred Hc------CCCEEEEEEecchHHHHHH-HHHHHHHCCCeEEEE
No 157
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=43.80 E-value=2.7e+02 Score=25.91 Aligned_cols=152 Identities=14% Similarity=0.082 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHHHH
Q 021569 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (311)
Q Consensus 75 ~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~~S 154 (311)
++..+.+..+++.|++.|=.-- +.... .+.| +++++.. + ++-|.-=.. ..++.+... +
T Consensus 139 ~~~~~~~~~~~~~Gf~~~KiKv--~~~~d------~~~l-~~vr~~~---g--~~~l~lDaN---~~~~~~~a~--~--- 196 (354)
T cd03317 139 EQLLKQIERYLEEGYKRIKLKI--KPGWD------VEPL-KAVRERF---P--DIPLMADAN---SAYTLADIP--L--- 196 (354)
T ss_pred HHHHHHHHHHHHcCCcEEEEec--ChHHH------HHHH-HHHHHHC---C--CCeEEEECC---CCCCHHHHH--H---
Confidence 4566677788899998874321 22111 3333 3344332 1 222222221 234554432 1
Q ss_pred HHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCcc-ceEeecCCcHHHHHHHHHHHHhcCCCeeeeeeccCcCcCCc
Q 021569 155 LFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLV-KAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP 233 (311)
Q Consensus 155 L~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~i-r~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~ 233 (311)
+++| +..++.++-.|-+ . +-++.+.+|++.-.+ -..|=|-++.+.+..+++. --++++|+.....---.
T Consensus 197 ~~~l--~~~~i~~iEeP~~--~-~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~-----~~~d~~~ik~~~~GGit 266 (354)
T cd03317 197 LKRL--DEYGLLMIEQPLA--A-DDLIDHAELQKLLKTPICLDESIQSAEDARKAIEL-----GACKIINIKPGRVGGLT 266 (354)
T ss_pred HHHh--hcCCccEEECCCC--h-hHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHc-----CCCCEEEecccccCCHH
Confidence 3444 2346667766532 2 236677777766443 3678888898888888643 23567777654332111
Q ss_pred cccchhHHHHHhCCeEEEcccCccc
Q 021569 234 EENGVKAACDELGITLIAYCPIAQG 258 (311)
Q Consensus 234 ~~~~l~~~~~~~gi~v~a~spL~~G 258 (311)
+-..+..+|+.+||.++..+...+|
T Consensus 267 ~~~~i~~~A~~~gi~~~~g~~~es~ 291 (354)
T cd03317 267 EALKIHDLCQEHGIPVWCGGMLESG 291 (354)
T ss_pred HHHHHHHHHHHcCCcEEecCcccch
Confidence 1124788999999999875554433
No 158
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=43.43 E-value=62 Score=31.61 Aligned_cols=107 Identities=11% Similarity=0.009 Sum_probs=68.3
Q ss_pred HHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCH-------HHHHHHHHH--HHHhhCCCCcceEEecCCCCCChHHHH
Q 021569 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGR-------QSVLAALKD--SLFRLGLSSVELYQLHWAGIWGNEGFI 180 (311)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~-------~~i~~~~~~--SL~rL~~d~iDl~~lH~p~~~~~~~~~ 180 (311)
|.++.-+-+...... +.+++|+.-+|.+...... -.|.-.|++ .-+||.+.|+|.. ....+|.+
T Consensus 151 eT~~~~~r~h~~gdL-~Gk~~lTaGLGGMgGAQplA~~ma~~v~i~vevd~srI~~Rl~t~y~d~~------a~~ldeAl 223 (561)
T COG2987 151 ETFAEAGRQHFGGDL-KGKWVLTAGLGGMGGAQPLAATMAGAVCIAVEVDESRIDKRLRTGYLDEI------AETLDEAL 223 (561)
T ss_pred HHHHHHHHHhcCCCc-cceEEEecCCCcccccchHHHHhcCceEEEEEeCHHHHHHHHhcchhhhh------cCCHHHHH
Confidence 555555444444332 5788999888753211100 001111222 2378889999842 14678999
Q ss_pred HHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeee--eeeccC
Q 021569 181 DGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS--NQVNYS 227 (311)
Q Consensus 181 ~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~--~Q~~~~ 227 (311)
...++..++|+-.+||+-.--++-+.++++ .++.|++ -|...|
T Consensus 224 ~~a~~~~~ag~p~SIgl~GNaaei~~~l~~----r~~~pD~vtDQTsaH 268 (561)
T COG2987 224 ALAEEATAAGEPISIGLLGNAAEILPELLR----RGIRPDLVTDQTSAH 268 (561)
T ss_pred HHHHHHHhcCCceEEEEeccHHHHHHHHHH----cCCCCceeccccccc
Confidence 999999999999999999888787777754 3566655 466655
No 159
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=43.27 E-value=3e+02 Score=27.19 Aligned_cols=21 Identities=5% Similarity=-0.007 Sum_probs=15.6
Q ss_pred CCHHHHHHHHHHHHHhhCCCC
Q 021569 142 LGRQSVLAALKDSLFRLGLSS 162 (311)
Q Consensus 142 ~~~~~i~~~~~~SL~rL~~d~ 162 (311)
.+++.|.+.++...++.|+.+
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~ 242 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGF 242 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCE
Confidence 367788888888777777654
No 160
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=42.98 E-value=1.1e+02 Score=28.45 Aligned_cols=19 Identities=11% Similarity=0.195 Sum_probs=16.6
Q ss_pred chhHHHHHhCCeEEEcccC
Q 021569 237 GVKAACDELGITLIAYCPI 255 (311)
Q Consensus 237 ~l~~~~~~~gi~v~a~spL 255 (311)
.+++.|+++||.|.||-.+
T Consensus 74 ~~I~eaHkrGlevHAW~~~ 92 (311)
T PF02638_consen 74 FMIEEAHKRGLEVHAWFRV 92 (311)
T ss_pred HHHHHHHHcCCEEEEEEEe
Confidence 4899999999999999743
No 161
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=42.92 E-value=3.1e+02 Score=27.15 Aligned_cols=120 Identities=14% Similarity=0.055 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHHHHHH
Q 021569 77 AKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLF 156 (311)
Q Consensus 77 ~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~ 156 (311)
+....-+|+++|++.||||-. +.|...++...|.++ .+|+..+.. .+.+.+.+.+..+. ++
T Consensus 220 A~An~laAieAGad~vD~ai~-g~g~gagN~~tE~lv-~~L~~~g~~----------------tgiDl~~L~~~a~~-~~ 280 (468)
T PRK12581 220 SQMTYLAAVEAGADRIDTALS-PFSEGTSQPATESMY-LALKEAGYD----------------ITLDETLLEQAANH-LR 280 (468)
T ss_pred HHHHHHHHHHcCCCEEEeecc-ccCCCcCChhHHHHH-HHHHhcCCC----------------CCcCHHHHHHHHHH-HH
Q ss_pred hhCCCCcceEE----ecCCCC------CChHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeee
Q 021569 157 RLGLSSVELYQ----LHWAGI------WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (311)
Q Consensus 157 rL~~d~iDl~~----lH~p~~------~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~ 221 (311)
.+...|.+..+ +..+|. .|--..=.-..+|++.|.-..+ .+-++++.+.-+..|.+|-|
T Consensus 281 ~vr~~y~~~~~~~~~~~~~d~~v~~hqiPGGm~snl~~Ql~~~g~~dr~------~ev~~e~~~V~~~lG~p~~V 349 (468)
T PRK12581 281 QARQKYLADGILDPSLLFPDPRTLQYQVPGGMLSNMLSQLKQANAESKL------EEVLAEVPRVRKDLGYPPLV 349 (468)
T ss_pred HHHHHhcccccCCCccCCCCcceeeCCCCcchHHHHHHHHHHCCcHhhH------HHHHHHHHHHHHHcCCCCEE
No 162
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=42.46 E-value=2.7e+02 Score=26.34 Aligned_cols=89 Identities=18% Similarity=0.171 Sum_probs=59.4
Q ss_pred EEecCCCC------------CChHHHHHHHHHHHHcCccceEee-------cCCcHHHHHHHHHHHHhcCCCeeeeeecc
Q 021569 166 YQLHWAGI------------WGNEGFIDGLGDAVEQGLVKAVGV-------SNYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (311)
Q Consensus 166 ~~lH~p~~------------~~~~~~~~~l~~l~~~G~ir~iGv-------Sn~~~~~l~~~~~~~~~~g~~~~~~Q~~~ 226 (311)
+-||.|+. ++.++.+++.+...+... +.|-+ -|-+.++.+++.+.++ +++..++=++|
T Consensus 216 iSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~-~rVt~EY~Ll~~VND~~e~A~~L~~ll~--~~~~~VNLIP~ 292 (349)
T COG0820 216 ISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSG-RRVTFEYVLLDGVNDSLEHAKELAKLLK--GIPCKVNLIPY 292 (349)
T ss_pred EecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccC-ceEEEEeeecccccCCHHHHHHHHHHhc--CCCceEEEeec
Confidence 56898864 346777888776665544 43333 2667788888877653 45668999999
Q ss_pred CcCcCCcccc-------chhHHHHHhCCeEEEcccCcc
Q 021569 227 SLIYRKPEEN-------GVKAACDELGITLIAYCPIAQ 257 (311)
Q Consensus 227 ~~~~~~~~~~-------~l~~~~~~~gi~v~a~spL~~ 257 (311)
||+.-...+. ...+..+++||.+.....-+.
T Consensus 293 Np~~~~~y~r~~~~~i~~F~~~L~~~gv~~tvR~~~g~ 330 (349)
T COG0820 293 NPVPGSDYERSSKERIRKFLKILKKAGVLVTVRKTRGD 330 (349)
T ss_pred CCCCCCCccCCcHHHHHHHHHHHHhCCeeEEecccccc
Confidence 9987654221 355666777898887766554
No 163
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=42.40 E-value=1.8e+02 Score=28.80 Aligned_cols=57 Identities=23% Similarity=0.236 Sum_probs=30.9
Q ss_pred cceEeecCCcHHHHHHHHHHHHhcCCCeeeeeeccCcCcCCccccchhHHHHHhCCeEEEcccCccccccCC
Q 021569 192 VKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGK 263 (311)
Q Consensus 192 ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spL~~G~Ltg~ 263 (311)
|..+|-.+-+..-...+.+.++..+++.++-=+ |.++-.++.+++|+. +++|+|-+|
T Consensus 447 vdtlg~~~a~~~I~~hII~MAk~L~L~iVaEGV---------EteeQ~~~LR~~Gv~------~gQGW~fsk 503 (524)
T COG4943 447 VDTLGTDSASHLIAPHIIEMAKSLGLKIVAEGV---------ETEEQVDWLRKRGVH------YGQGWLFSK 503 (524)
T ss_pred HHhhccCcccchhHHHHHHHHHHcCCcEEeecc---------cHHHHHHHHHHcCCc------cccccccCC
Confidence 344444444444445555556655555554322 222456677777764 478887554
No 164
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=42.30 E-value=3.7e+02 Score=26.92 Aligned_cols=105 Identities=19% Similarity=0.218 Sum_probs=54.0
Q ss_pred HHHHHHHHHhccCCCC-CccEEEEeeccCCCCCCCHHHHHHHHHHHHHhhCCCCcceEEecCCCCCC------hHHHHHH
Q 021569 110 ETLLGRFIKERKQRDP-EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG------NEGFIDG 182 (311)
Q Consensus 110 E~~lG~al~~~~~~~~-R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~------~~~~~~~ 182 (311)
|+-|-++|++.....+ .+-++|.|-+.. ..--+.|..-+++.-++. .-++++.+|.|+... .....++
T Consensus 112 e~kL~~~I~ea~~~~~~p~~I~V~tTC~t---~lIGDDi~av~k~~~~~~--~~~pVi~v~tpGF~G~~~~gg~~~a~~a 186 (513)
T TIGR01861 112 EKLLKQNIIEAFKAFPHIKRMTIYQTCAT---ALIGDDIAAIAKEVMEEM--PDVDIFVCNSPGFAGPSQSGGHHKINIA 186 (513)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEEccCch---hhccCCHHHHHHHHHHhc--CCCcEEEEeCCCccCccccchHHHHHHH
Confidence 7755555544322221 356888888743 122334444444443333 127899999998622 2222333
Q ss_pred H-HHHHH--------cCccceEeecCCcHHHHHHHHHHHHhcCCCee
Q 021569 183 L-GDAVE--------QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (311)
Q Consensus 183 l-~~l~~--------~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~ 220 (311)
+ +.++. .+.|--||-.|.. ..+.++..+++..|+++.
T Consensus 187 li~~~v~~~~~~~~~~~~VNliG~~n~~-gD~~eik~lLe~~Gl~v~ 232 (513)
T TIGR01861 187 WINQKVGTVEPEIKGKHVINYVGEYNIQ-GDQEVMVDYFQRMGIQVL 232 (513)
T ss_pred HHHHhhcccCcccCCCCeEEEeCCCCCc-cCHHHHHHHHHHCCCeEE
Confidence 2 33331 2568888876652 233444444566676654
No 165
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=42.23 E-value=23 Score=21.48 Aligned_cols=21 Identities=19% Similarity=0.483 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhcCCCcchhc
Q 021569 288 PLLNRIKELGENYSKTSTQFS 308 (311)
Q Consensus 288 ~~~~~l~~iA~~~g~s~~qva 308 (311)
+..+.|.++|++.|.|.+++.
T Consensus 9 ~~~~~l~~~a~~~g~s~s~~i 29 (39)
T PF01402_consen 9 ELYERLDELAKELGRSRSELI 29 (39)
T ss_dssp HHHHHHHHHHHHHTSSHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHH
Confidence 345689999999999988764
No 166
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=42.22 E-value=2.9e+02 Score=26.96 Aligned_cols=121 Identities=12% Similarity=0.091 Sum_probs=65.3
Q ss_pred HHHHHH-hccCCCCCccEEEEeeccCCCCCCCHHHHHHHHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCc
Q 021569 113 LGRFIK-ERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGL 191 (311)
Q Consensus 113 lG~al~-~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ 191 (311)
|.+.+. .++.....++|+|++=. ..+++-.++ +=++.=|.+.+-.|.. ..++.-+...|
T Consensus 141 ia~~l~~~~g~~~~~~~IiiT~G~------------q~al~l~~~-~l~~pGd~v~vE~PtY------~~~~~~~~~~g- 200 (459)
T COG1167 141 IAAYLLARRGISCEPEQIVITSGA------------QQALDLLLR-LLLDPGDTVLVEDPTY------PGALQALEALG- 200 (459)
T ss_pred HHHHHHHhcCCccCcCeEEEeCCH------------HHHHHHHHH-HhCCCCCEEEEcCCCc------HHHHHHHHHcC-
Confidence 444444 33333234567776643 344553333 3345668888888864 22233333333
Q ss_pred cceEeec----CCcHHHHHHHHHHHHhcCCCeee----eeeccCcCcCCccccchhHHHHHhCCeEE---EcccCc
Q 021569 192 VKAVGVS----NYSEKRLRNAYEKLKKRGIPLAS----NQVNYSLIYRKPEENGVKAACDELGITLI---AYCPIA 256 (311)
Q Consensus 192 ir~iGvS----n~~~~~l~~~~~~~~~~g~~~~~----~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~---a~spL~ 256 (311)
++.++|. +.+++.++++++ ...+++.. .|++............++++|+++++.|| .|+.|.
T Consensus 201 ~~~~~vp~d~~G~~~e~le~~~~---~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~ 273 (459)
T COG1167 201 ARVIPVPVDEDGIDPEALEEALA---QWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELR 273 (459)
T ss_pred CcEEecCCCCCCCCHHHHHHHHh---hcCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhh
Confidence 5667665 346677777643 22233332 35554444443334469999999999998 454443
No 167
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=42.03 E-value=3e+02 Score=25.87 Aligned_cols=119 Identities=14% Similarity=0.065 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHHHHcCCCeEEcCCCCCC----------------CcCCCCCchHHHHHHHHHhccCCCCCccEEEEeecc
Q 021569 73 KMKAAKAAFDTSLDNGITFFDTAEVYGS----------------RASFGAINSETLLGRFIKERKQRDPEVEVTVATKFA 136 (311)
Q Consensus 73 ~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~----------------g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~ 136 (311)
+.+.-.++.++|-+.|+-+|=|--.+.. |+. +-..+|-...+. . +.++++|=.
T Consensus 88 p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~----~~~plik~iA~~-~-----kPiIlSTGm- 156 (347)
T COG2089 88 PLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEI----NDLPLIKYIAKK-G-----KPIILSTGM- 156 (347)
T ss_pred CHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccc----cChHHHHHHHhc-C-----CCEEEEccc-
Confidence 3566778899999999999866433211 111 113333332222 1 456777655
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCCcceEEecCCCC--CChHHH-HHHHHHHHHcCccceEeecCCcHHHHHHHHHH
Q 021569 137 ALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGF-IDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEK 211 (311)
Q Consensus 137 ~~~~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~--~~~~~~-~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~ 211 (311)
.+-+.+.++++.-.++=. .|+.+||-... .|.+++ +.+|.+|.+.= -.-||+|.|+..-+.-+.++
T Consensus 157 -----a~~~ei~~av~~~r~~g~---~~i~LLhC~s~YPap~ed~NL~~i~~l~~~F-n~~vGlSDHT~g~~a~l~Av 225 (347)
T COG2089 157 -----ATIEEIEEAVAILRENGN---PDIALLHCTSAYPAPFEDVNLKAIPKLAEAF-NAIVGLSDHTLGILAPLAAV 225 (347)
T ss_pred -----ccHHHHHHHHHHHHhcCC---CCeEEEEecCCCCCCHHHhhHHHHHHHHHHh-CCccccccCccchhHHHHHH
Confidence 346677787776555433 39999997554 334432 44555554443 45699999998866666554
No 168
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=41.80 E-value=1.2e+02 Score=29.42 Aligned_cols=109 Identities=8% Similarity=0.020 Sum_probs=60.8
Q ss_pred HHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHHHHHHhhCCCCcceEEecCCCCCC-----hHHHHHHHH
Q 021569 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGLG 184 (311)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~-----~~~~~~~l~ 184 (311)
|+-|-++|+....+.+.+=++|.|-+-..--.-+.+.+.+.+++-... ..-+.++.+|-|+... .+.++++|-
T Consensus 76 ~~~L~~~I~~~~~~~~P~~I~V~ttC~~eiIGDDi~~v~~~~~~e~p~--~~~~pvi~v~tpgf~g~~~~G~~~a~~al~ 153 (432)
T TIGR01285 76 DEHIEEAIDTLCQRNKPKAIGLLSTGLTETRGEDIARVVRQFREKHPQ--HKGTAVVTVNTPDFKGSLEDGYAAAVESII 153 (432)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcccccccCHHHHHHHHHhhccc--ccCCeEEEecCCCcCCchHHHHHHHHHHHH
Confidence 777777776554322245678877774321223344444443322111 1236788888887631 333444442
Q ss_pred -HHHH--------cCccceEeecCCcHHHHHHHHHHHHhcCCCee
Q 021569 185 -DAVE--------QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (311)
Q Consensus 185 -~l~~--------~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~ 220 (311)
.+.. .++|--||-+++++..+.++.+.++..|+++.
T Consensus 154 ~~~~~~~~~~~~~~~~VNiig~~~~~~~d~~elk~lL~~~Gl~~~ 198 (432)
T TIGR01285 154 EAWVPPAPARAQRNRRVNLLVGSLLTPGDIEELRRMVEAFGLKPI 198 (432)
T ss_pred HHHcccccccCCCCCeEEEEcCCCCCccCHHHHHHHHHHcCCceE
Confidence 2222 45677788887766667777776777787664
No 169
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=41.40 E-value=28 Score=31.32 Aligned_cols=40 Identities=15% Similarity=0.185 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHH
Q 021569 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLL 113 (311)
Q Consensus 73 ~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~l 113 (311)
+...+..-.-.|+++|+++||++ .+|.|+..|+...|.++
T Consensus 199 ~~GlA~An~laAi~aG~~~iD~s-~~GlG~~aGN~~tE~lv 238 (268)
T cd07940 199 DLGLAVANSLAAVEAGARQVECT-INGIGERAGNAALEEVV 238 (268)
T ss_pred CcchHHHHHHHHHHhCCCEEEEE-eeccccccccccHHHHH
No 170
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=41.32 E-value=1.5e+02 Score=27.75 Aligned_cols=105 Identities=16% Similarity=0.185 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCcce---------EEecCCCCCChHHHHHHHHHHHHcCccceEeecCC-cHHHHHHHH
Q 021569 140 WRLGRQSVLAALKDSLFRLGLSSVEL---------YQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAY 209 (311)
Q Consensus 140 ~~~~~~~i~~~~~~SL~rL~~d~iDl---------~~lH~p~~~~~~~~~~~l~~l~~~G~ir~iGvSn~-~~~~l~~~~ 209 (311)
+.++.+.+.+-++. |.+.|+++|.+ -+-+.+...+..+.++.+.+..+.-++..+-+.+. +.+.++.+.
T Consensus 19 ~~f~~~~~~~ia~~-Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~ 97 (333)
T TIGR03217 19 HQFTIEQVRAIAAA-LDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKAAY 97 (333)
T ss_pred CcCCHHHHHHHHHH-HHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccCccCHHHHHHHH
Q ss_pred HHHHhcCCCeeeeeeccCcCcCCccccchhHHHHHhCCeEEEc
Q 021569 210 EKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAY 252 (311)
Q Consensus 210 ~~~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~ 252 (311)
+. .++.+.+-.+.-.-..... .+++++++|..+..+
T Consensus 98 ~~------gvd~iri~~~~~e~d~~~~-~i~~ak~~G~~v~~~ 133 (333)
T TIGR03217 98 DA------GARTVRVATHCTEADVSEQ-HIGMARELGMDTVGF 133 (333)
T ss_pred HC------CCCEEEEEeccchHHHHHH-HHHHHHHcCCeEEEE
No 171
>PRK12928 lipoyl synthase; Provisional
Probab=41.12 E-value=2.5e+02 Score=25.72 Aligned_cols=80 Identities=20% Similarity=0.292 Sum_probs=51.6
Q ss_pred ChHHHHHHHHHHHHcC---ccce---EeecCCcHHHHHHHHHHHHhcCCCeeeeee-ccCc-------CcC---Cccccc
Q 021569 175 GNEGFIDGLGDAVEQG---LVKA---VGVSNYSEKRLRNAYEKLKKRGIPLASNQV-NYSL-------IYR---KPEENG 237 (311)
Q Consensus 175 ~~~~~~~~l~~l~~~G---~ir~---iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~-~~~~-------~~~---~~~~~~ 237 (311)
..++.++.++.+++.| .++. +|+ .=+.+++.+.+..+++.++ +.+.+ +|.. +.+ ..+...
T Consensus 186 t~e~~le~l~~ak~~gp~i~~~s~iIvG~-GET~ed~~etl~~Lrel~~--d~v~i~~Yl~p~~~~~~v~~~~~~~~f~~ 262 (290)
T PRK12928 186 DYQRSLDLLARAKELAPDIPTKSGLMLGL-GETEDEVIETLRDLRAVGC--DRLTIGQYLRPSLAHLPVQRYWTPEEFEA 262 (290)
T ss_pred CHHHHHHHHHHHHHhCCCceecccEEEeC-CCCHHHHHHHHHHHHhcCC--CEEEEEcCCCCCccCCceeeccCHHHHHH
Confidence 4678899999999998 4443 577 5677888888777776553 33222 3321 111 111224
Q ss_pred hhHHHHHhCCeEEEcccCcc
Q 021569 238 VKAACDELGITLIAYCPIAQ 257 (311)
Q Consensus 238 l~~~~~~~gi~v~a~spL~~ 257 (311)
+-+++.+.|...++-+||-.
T Consensus 263 ~~~~~~~~g~~~~~~~p~~r 282 (290)
T PRK12928 263 LGQIARELGFSHVRSGPLVR 282 (290)
T ss_pred HHHHHHHcCCceeEecCccc
Confidence 67778888888888888864
No 172
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=41.09 E-value=96 Score=29.71 Aligned_cols=137 Identities=13% Similarity=0.173 Sum_probs=75.3
Q ss_pred HHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHHHHHH
Q 021569 77 AKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLF 156 (311)
Q Consensus 77 ~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~ 156 (311)
+.+-=-+|+|-|+--+-||. |.+ .+=-+|-.... +-|.++-++++. .- ....+..+|+
T Consensus 66 vlE~RiAaLEGG~aa~a~aS----G~A--------A~~~ai~~la~--aGD~iVss~~LY----GG----T~~lf~~tl~ 123 (426)
T COG2873 66 VLEERIAALEGGVAALAVAS----GQA--------AITYAILNLAG--AGDNIVSSSKLY----GG----TYNLFSHTLK 123 (426)
T ss_pred HHHHHHHHhhcchhhhhhcc----chH--------HHHHHHHHhcc--CCCeeEeecccc----Cc----hHHHHHHHHH
Confidence 34444578999998776663 322 22233332221 127788788872 22 3456788899
Q ss_pred hhCCCCcceEEecCCCCCChHHHHHHHHHHHHcC----ccceEeecCCcHHHHHHHHHHHHhcCCCeeeeeeccCcCcCC
Q 021569 157 RLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG----LVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 232 (311)
Q Consensus 157 rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G----~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~ 232 (311)
+||++ +-++... +.+ .+++.+++. .+..||=-..+.-.++.+.+++.++|++..+--.--.|+.
T Consensus 124 ~~Gi~---v~fvd~~---d~~----~~~~aI~~nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~atpyl-- 191 (426)
T COG2873 124 RLGIE---VRFVDPD---DPE----NFEAAIDENTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFATPYL-- 191 (426)
T ss_pred hcCcE---EEEeCCC---CHH----HHHHHhCcccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCCCccee--
Confidence 99964 3333322 223 333334332 2333443344667788888889999987666433322222
Q ss_pred ccccchhHHHHHhCCeEEEccc
Q 021569 233 PEENGVKAACDELGITLIAYCP 254 (311)
Q Consensus 233 ~~~~~l~~~~~~~gi~v~a~sp 254 (311)
=-+-+||-.|+.+|.
T Consensus 192 -------~rP~~hGADIVvHS~ 206 (426)
T COG2873 192 -------CRPIEHGADIVVHSA 206 (426)
T ss_pred -------cchhhcCCCEEEEee
Confidence 224567777776654
No 173
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=40.93 E-value=3e+02 Score=26.02 Aligned_cols=101 Identities=21% Similarity=0.157 Sum_probs=62.2
Q ss_pred HHHhhCCCCcceEEecCCCC------------CChHHHHHHHHHHHHc-Cc---cceEee--cCCcHHHHHHHHHHHHhc
Q 021569 154 SLFRLGLSSVELYQLHWAGI------------WGNEGFIDGLGDAVEQ-GL---VKAVGV--SNYSEKRLRNAYEKLKKR 215 (311)
Q Consensus 154 SL~rL~~d~iDl~~lH~p~~------------~~~~~~~~~l~~l~~~-G~---ir~iGv--Sn~~~~~l~~~~~~~~~~ 215 (311)
.|...+...+++ -||.+++ .+.+++++++.+...+ |+ |+++=+ -|.+.++++++.+.++.
T Consensus 207 ~L~~~~l~~L~i-SLha~~~e~r~~i~p~~~~~~l~~ll~al~~~~~~~~~~v~iey~LI~GvNDs~ed~~~l~~~l~~- 284 (354)
T PRK14460 207 ELGESGLAFLAV-SLHAPNQELRERIMPKAARWPLDDLIAALKSYPLKTRERVTFEYLLLGGVNDSLEHARELVRLLSR- 284 (354)
T ss_pred HHHhCCCcEEEE-eCCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhcCCeEEEEEEEECCCCCCHHHHHHHHHHHhc-
Confidence 344555444443 4777664 2457788888765443 22 334333 36677888888887654
Q ss_pred CCCeeeeeeccCcCcCCc----ccc---chhHHHHHhCCeEEEcccCcc
Q 021569 216 GIPLASNQVNYSLIYRKP----EEN---GVKAACDELGITLIAYCPIAQ 257 (311)
Q Consensus 216 g~~~~~~Q~~~~~~~~~~----~~~---~l~~~~~~~gi~v~a~spL~~ 257 (311)
.+..++=++||++.... ..+ .+.++.+++||.+......+.
T Consensus 285 -~~~~VnLIpyn~~~g~~y~~p~~e~v~~f~~~l~~~Gi~vtir~~~G~ 332 (354)
T PRK14460 285 -TKCKLNLIVYNPAEGLPYSAPTEERILAFEKYLWSKGITAIIRKSKGQ 332 (354)
T ss_pred -CCCcEEEEcCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCC
Confidence 34567788999864322 111 356677888999988777664
No 174
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=40.71 E-value=3.5e+02 Score=26.17 Aligned_cols=164 Identities=17% Similarity=0.226 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHHHhcc-CCCCCccEEEEeeccCCCCCCCHHHHHHHHHH
Q 021569 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERK-QRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (311)
Q Consensus 75 ~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~-~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~~ 153 (311)
.++.+.+..+++.|- .+.|+.. .|...+-+.+.+.+.+.. .....+|+||++-+. .++|-
T Consensus 81 ~~a~~Av~~al~Sgk-----~N~Yaps--~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~------------qAIe~ 141 (447)
T KOG0259|consen 81 QEAEQAVVDALRSGK-----GNGYAPS--VGILPARRAVAEYLNRDLPNKLTADDVVLTSGCS------------QAIEL 141 (447)
T ss_pred HHHHHHHHHHHhcCC-----CCCcCCc--cccHHHHHHHHHHhhcCCCCccCcCceEEeccch------------HHHHH
Confidence 567788888898883 3456552 233345666777654332 222468999998763 12222
Q ss_pred HHHhhCCCCcceEEecCCCC----------------------CChHHHHHHHHHHHHcCccceEee-------cCCcHHH
Q 021569 154 SLFRLGLSSVELYQLHWAGI----------------------WGNEGFIDGLGDAVEQGLVKAVGV-------SNYSEKR 204 (311)
Q Consensus 154 SL~rL~~d~iDl~~lH~p~~----------------------~~~~~~~~~l~~l~~~G~ir~iGv-------Sn~~~~~ 204 (311)
.+..|---.-.+ ++-+|.. .+.+--++.++.|.++..+--+=+ +-|+.++
T Consensus 142 ~i~~LA~p~aNI-LlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~AivviNP~NPcGnVys~~H 220 (447)
T KOG0259|consen 142 AISSLANPGANI-LLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVVINPNNPCGNVYSEDH 220 (447)
T ss_pred HHHHhcCCCCce-ecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhccCeeEEEEeCCCCCCcccccHHH
Confidence 222221111111 2222221 011123677888888876654322 1278899
Q ss_pred HHHHHHHHHhcCCCeeeeeeccCcCcCCccccchhHHHHHh-CCeEEEcccCcccccc
Q 021569 205 LRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDEL-GITLIAYCPIAQGALT 261 (311)
Q Consensus 205 l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~-gi~v~a~spL~~G~Lt 261 (311)
|+++++.+++.|+.+..-.+--+..+.... .++..+=. -+.|+.-.-+..|++.
T Consensus 221 L~kiae~A~klgi~vIaDEVY~~~vfg~~p---fvpmg~fssiVPVitlggisKrW~V 275 (447)
T KOG0259|consen 221 LKKIAETAKKLGIMVIADEVYGHTVFGDKP---FVPMGKFSSIVPVITLGGISKRWIV 275 (447)
T ss_pred HHHHHHHHHHhCCeEEehhhcceeecCCCC---ccchhhccccCceEeeccccccccc
Confidence 999999999888877766665555554322 33333322 4667766666666553
No 175
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=40.65 E-value=31 Score=33.10 Aligned_cols=140 Identities=14% Similarity=0.162 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHcCCC-eEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCCCCccEEEEee--------ccCCCCCCCHH
Q 021569 75 KAAKAAFDTSLDNGIT-FFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATK--------FAALPWRLGRQ 145 (311)
Q Consensus 75 ~~~~~~l~~Al~~Gi~-~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK--------~~~~~~~~~~~ 145 (311)
+.-.+-++.|.+.|-. ..|-+. .|+ -..+-+.+-+. ..+-|.|= ......+.+.+
T Consensus 76 ~~E~~K~~~A~~~GADtvMDLSt-ggd---------l~~iR~~il~~------~~vpvGTVPiYqa~~~~~~~~~~~t~d 139 (420)
T PF01964_consen 76 EEELEKLKIAEKAGADTVMDLST-GGD---------LDEIRRAILEN------SPVPVGTVPIYQAAIRKGGSIVDMTED 139 (420)
T ss_dssp HHHHHHHHHHHHTT-SEEEE----STT---------HHHHHHHHHHT-------SS-EEE-HHHHHHHHTTT-GGG--HH
T ss_pred HHHHHHHHHHHHhCCCEEEEcCC-CCC---------HHHHHHHHHHh------CCCccccchHHHHHHHhCCChhhCCHH
Confidence 4445667899999976 446542 222 33444444332 23444442 11112356788
Q ss_pred HHHHHHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeeeeec
Q 021569 146 SVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVN 225 (311)
Q Consensus 146 ~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~ 225 (311)
.+.+.+++..+ +-||++-+|--- +.+.++.+++++++ .|+-+-.-.-+...+.. + ..
T Consensus 140 ~~~~~ie~qa~----~GVDfmtiH~gi------t~~~~~~~~~~~R~--~giVSRGGs~l~~WM~~---n--------~~ 196 (420)
T PF01964_consen 140 DFFDVIEKQAK----DGVDFMTIHCGI------TRETLERLKKSGRI--MGIVSRGGSILAAWMLH---N--------GK 196 (420)
T ss_dssp HHHHHHHHHHH----HT--EEEE-TT--------GGGGGGGT--TSS--S----HHHHHHHHHHHH---H--------TS
T ss_pred HHHHHHHHHHH----cCCCEEEEccch------hHHHHHHHhhhccc--cCccccchHHHHHHHHh---c--------CC
Confidence 88888888877 568999999642 45667788888854 46655555544444322 1 13
Q ss_pred cCcCcCCccccchhHHHHHhCCeEEEcccCcccc
Q 021569 226 YSLIYRKPEENGVKAACDELGITLIAYCPIAQGA 259 (311)
Q Consensus 226 ~~~~~~~~~~~~l~~~~~~~gi~v~a~spL~~G~ 259 (311)
=||++.... ++++.|+++++.+- |+-|+
T Consensus 197 ENPly~~fD--~lLeI~k~yDVtLS----LGDgl 224 (420)
T PF01964_consen 197 ENPLYEHFD--RLLEIAKEYDVTLS----LGDGL 224 (420)
T ss_dssp --HHHHTHH--HHHHHHTTTT-EEE----E--TT
T ss_pred cCcHHHhHH--HHHHHHHHhCeeEe----ccccc
Confidence 356665544 59999999999995 56554
No 176
>PRK01060 endonuclease IV; Provisional
Probab=40.06 E-value=1.8e+02 Score=25.98 Aligned_cols=53 Identities=25% Similarity=0.334 Sum_probs=25.8
Q ss_pred eEeecCCcHHHHHHHHHHHHhcCCCeeeeeeccC-c--CcCCc----cccchhHHHHHhCCe
Q 021569 194 AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYS-L--IYRKP----EENGVKAACDELGIT 248 (311)
Q Consensus 194 ~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~-~--~~~~~----~~~~l~~~~~~~gi~ 248 (311)
.+|+-+-....++++++.++..| ++.+|+... + +.... ...++.+.++++|+.
T Consensus 3 ~~g~~~~~~~~~~~~l~~~~~~G--~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~gl~ 62 (281)
T PRK01060 3 LIGAHVSAAGGLEGAVAEAAEIG--ANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYGIS 62 (281)
T ss_pred eEEEeeecCCCHHHHHHHHHHcC--CCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCC
Confidence 45555443333666666655544 445555322 1 11100 011366778888887
No 177
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=39.54 E-value=1.2e+02 Score=26.77 Aligned_cols=31 Identities=10% Similarity=0.114 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHHHHcCCCeEEcCCCCCCCc
Q 021569 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRA 102 (311)
Q Consensus 72 ~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~ 102 (311)
.+.+++.++++.|.+.|++-+=..++|-.|.
T Consensus 17 ~s~eesl~ml~~A~~qGvt~iVaTsHh~~g~ 47 (254)
T COG4464 17 KSLEESLAMLREAVRQGVTKIVATSHHLHGR 47 (254)
T ss_pred CcHHHHHHHHHHHHHcCceEEeecccccCCc
Confidence 4568999999999999999877666665543
No 178
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=39.41 E-value=3.1e+02 Score=25.90 Aligned_cols=90 Identities=9% Similarity=0.095 Sum_probs=59.9
Q ss_pred EEecCCCC------------CChHHHHHHHHHHHHc-Cc---cceEee--cCCcHHHHHHHHHHHHhcCCCeeeeeeccC
Q 021569 166 YQLHWAGI------------WGNEGFIDGLGDAVEQ-GL---VKAVGV--SNYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (311)
Q Consensus 166 ~~lH~p~~------------~~~~~~~~~l~~l~~~-G~---ir~iGv--Sn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~ 227 (311)
+-||.|+. ++.+++++++.++.++ |+ ++++=+ -|.+.++++++.+.++.. +..++-++||
T Consensus 216 iSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l--~~kVnLIPyN 293 (342)
T PRK14465 216 ISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITFEYVMIPGVNMGRENANKLVKIARSL--DCKINVIPLN 293 (342)
T ss_pred EEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhC--CCcEEEEccC
Confidence 66788764 2468899999877754 32 334444 356788888888887654 3567778888
Q ss_pred cCcCC---ccc---cchhHHHHHhCCeEEEcccCcc
Q 021569 228 LIYRK---PEE---NGVKAACDELGITLIAYCPIAQ 257 (311)
Q Consensus 228 ~~~~~---~~~---~~l~~~~~~~gi~v~a~spL~~ 257 (311)
+.... +.. ....+.++++||.+......+.
T Consensus 294 ~~~~~~~~ps~e~i~~F~~~L~~~Gi~v~~R~~~G~ 329 (342)
T PRK14465 294 TEFFGWRRPTDDEVAEFIMLLEPAGVPILNRRSPGK 329 (342)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 74321 111 1356678888999998877664
No 179
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=39.33 E-value=1.2e+02 Score=29.48 Aligned_cols=84 Identities=6% Similarity=-0.084 Sum_probs=54.1
Q ss_pred EecCCCCC-ChHHHHHHHHHHHHc------CccceEeecCCcHHHHHHHHHHHHhcCCCeeeeeeccCcCcCCccccchh
Q 021569 167 QLHWAGIW-GNEGFIDGLGDAVEQ------GLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVK 239 (311)
Q Consensus 167 ~lH~p~~~-~~~~~~~~l~~l~~~------G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~~~~~l~ 239 (311)
++-.|-+. +.++.++.|.+|++. ..=-..+-|-++.+.+.++++. --.+++|+-.+-+---.+..++.
T Consensus 267 ~iEqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~-----~a~d~v~iK~~k~GGIt~a~kia 341 (408)
T TIGR01502 267 RIEGPMDVGSRQAQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDA-----KAGHMVQIKTPDVGGVNNIARAI 341 (408)
T ss_pred EEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHh-----CCCCEEEeCccccCCHHHHHHHH
Confidence 66666432 224567788888766 3334567777888888888654 23567777655432111222589
Q ss_pred HHHHHhCCeEEEcccC
Q 021569 240 AACDELGITLIAYCPI 255 (311)
Q Consensus 240 ~~~~~~gi~v~a~spL 255 (311)
++|+++||.++..+..
T Consensus 342 ~lA~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 342 MYCKANGMGAYVGGTC 357 (408)
T ss_pred HHHHHcCCEEEEeCCC
Confidence 9999999999986654
No 180
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=39.03 E-value=5.1e+02 Score=28.02 Aligned_cols=103 Identities=18% Similarity=0.123 Sum_probs=54.4
Q ss_pred HHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHHHHHHhhCCCCcceEEecCCCCCC-----hHHHHHHH-
Q 021569 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGL- 183 (311)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~-----~~~~~~~l- 183 (311)
|+-|-++|+....+.+.+=++|.|-+...--.-+-+.+.+.+ -+++ -+.++.++-|.... .+...+++
T Consensus 97 ~~kL~~aI~~~~~~~~P~~I~V~tTC~~elIGDDi~~v~~~~---~~~~---~~pvi~v~tpGF~gs~~~G~~~a~~al~ 170 (917)
T PRK14477 97 EKKLYRAILELAERYQPKAVFVYATCVTALTGDDVEAVCKAA---AEKV---GIPVIPVNTPGFIGDKNIGNRLAGEALL 170 (917)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCchHHHhccCHHHHHHHH---HHhh---CCcEEEEECCCccCchhhHHHHHHHHHH
Confidence 777778777654332246678888764211112233333322 2233 35788999887622 12222232
Q ss_pred HHHHH--------cCccceEeecCCcHHHHHHHHHHHHhcCCCe
Q 021569 184 GDAVE--------QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPL 219 (311)
Q Consensus 184 ~~l~~--------~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~ 219 (311)
+.++. .+.|--||-.|+. ..+.++...++..|+++
T Consensus 171 ~~l~~~~~p~~~~~~~VNliG~~~~~-gd~~elk~lL~~~Gi~v 213 (917)
T PRK14477 171 KHVIGTAEPEVTTPYDINLIGEYNIA-GDLWGMLPLFDRLGIRV 213 (917)
T ss_pred HHHHhhcCCCCCCCCcEEEECCCCCc-chHHHHHHHHHHcCCeE
Confidence 33331 3668888877763 34445555566667664
No 181
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=38.67 E-value=2.6e+02 Score=26.88 Aligned_cols=31 Identities=13% Similarity=0.079 Sum_probs=13.5
Q ss_pred eeeeeccCcCcCCccccchhHHHHHhCCeEE
Q 021569 220 ASNQVNYSLIYRKPEENGVKAACDELGITLI 250 (311)
Q Consensus 220 ~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~ 250 (311)
.++..+-||.-+-....++.++|+++|+.++
T Consensus 149 V~l~~P~NPtG~v~dl~~I~~la~~~gi~vI 179 (405)
T PRK08776 149 VLIETPSNPLLRITDLRFVIEAAHKVGALTV 179 (405)
T ss_pred EEEECCCCCCCccCCHHHHHHHHHHcCCEEE
Confidence 3333444443332222235555555555555
No 182
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=38.64 E-value=1.3e+02 Score=28.39 Aligned_cols=98 Identities=15% Similarity=0.083 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhhCCCCcceEEecCCCCC----ChHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeee
Q 021569 147 VLAALKDSLFRLGLSSVELYQLHWAGIW----GNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN 222 (311)
Q Consensus 147 i~~~~~~SL~rL~~d~iDl~~lH~p~~~----~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~~ 222 (311)
-+..+-+.|.++|+++|++-..-.|... +.+++++.+. +...++..+++ .+...++.+++. |.+...+
T Consensus 69 ~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~---~~~~~~~~~l~-~n~~die~A~~~----g~~~v~i 140 (347)
T PLN02746 69 VKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVR---NLEGARFPVLT-PNLKGFEAAIAA----GAKEVAV 140 (347)
T ss_pred HHHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHH---hccCCceeEEc-CCHHHHHHHHHc----CcCEEEE
Confidence 4555666799999999998655455332 2345555554 32335555554 478888887654 3322111
Q ss_pred -------eeccCcCcCCccc----cchhHHHHHhCCeEEEc
Q 021569 223 -------QVNYSLIYRKPEE----NGVKAACDELGITLIAY 252 (311)
Q Consensus 223 -------Q~~~~~~~~~~~~----~~l~~~~~~~gi~v~a~ 252 (311)
++.+|+-....+. .+++++++++|+.+.++
T Consensus 141 ~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~ 181 (347)
T PLN02746 141 FASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGY 181 (347)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 1112221111110 14788999999988543
No 183
>PRK15063 isocitrate lyase; Provisional
Probab=38.48 E-value=1.7e+02 Score=28.48 Aligned_cols=142 Identities=13% Similarity=0.102 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHcCCC---eEEcCCC-CCCCcCCCC--CchHHHHHHHHHhccCC-CCCccEEEEeeccCCC--------
Q 021569 75 KAAKAAFDTSLDNGIT---FFDTAEV-YGSRASFGA--INSETLLGRFIKERKQR-DPEVEVTVATKFAALP-------- 139 (311)
Q Consensus 75 ~~~~~~l~~Al~~Gi~---~~DTA~~-Yg~g~s~~~--~~sE~~lG~al~~~~~~-~~R~~~~I~tK~~~~~-------- 139 (311)
..+.++++..+++|.- +=|-... =-.|+..|. ...|+.+.+.-..+... .-..+++|....-...
T Consensus 161 ~nv~~~vk~~ieAGaAGIhiEDQ~~~~KkCGH~~GK~Lvp~~e~i~kL~AAr~A~d~~g~~~vIiARTDA~aa~li~s~~ 240 (428)
T PRK15063 161 LNAFELMKAMIEAGAAGVHFEDQLASEKKCGHMGGKVLVPTQEAIRKLVAARLAADVMGVPTLVIARTDAEAADLLTSDV 240 (428)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCCCCccccCCCCCCeeecHHHHHHHHHHHHHHHHhcCCCeEEEEECCccccccccccc
Confidence 4588899999998864 3354211 001222222 13466666533222110 0012466655542200
Q ss_pred ---------CCCC-------HHHHHHHHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHH---cCccceEeec--
Q 021569 140 ---------WRLG-------RQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVE---QGLVKAVGVS-- 198 (311)
Q Consensus 140 ---------~~~~-------~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~---~G~ir~iGvS-- 198 (311)
...+ ...+..+|++.+.-.. +-|+++++... +..+.+..+.+.+. -+++-..|.|
T Consensus 241 d~rD~~fi~g~r~~eg~y~~~~Gld~AI~Ra~AYa~--GAD~iw~Et~~--~d~ee~~~fa~~v~~~~P~~~layn~sPs 316 (428)
T PRK15063 241 DERDRPFITGERTAEGFYRVKAGIEQAIARGLAYAP--YADLIWCETST--PDLEEARRFAEAIHAKFPGKLLAYNCSPS 316 (428)
T ss_pred cccccccccCCCccccccccccCHHHHHHHHHHHhc--CCCEEEeCCCC--CCHHHHHHHHHhhcccCccceeecCCCCC
Confidence 0001 1347777887776554 99999998521 22233333333332 2444445544
Q ss_pred -----CCcHHHHHHHHHHHHhcCCCee
Q 021569 199 -----NYSEKRLRNAYEKLKKRGIPLA 220 (311)
Q Consensus 199 -----n~~~~~l~~~~~~~~~~g~~~~ 220 (311)
+++.++|+.+.+.+.+.|..+.
T Consensus 317 fnW~~~~~~~~~~~f~~eL~~~Gy~~~ 343 (428)
T PRK15063 317 FNWKKNLDDATIAKFQRELGAMGYKFQ 343 (428)
T ss_pred cccccccCHHHHHHHHHHHHHcCceEE
Confidence 2445666666555555555443
No 184
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=38.40 E-value=3.4e+02 Score=25.45 Aligned_cols=71 Identities=11% Similarity=-0.080 Sum_probs=52.2
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCcceEEecCCCC--CChHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHH
Q 021569 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEK 211 (311)
Q Consensus 140 ~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~--~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~ 211 (311)
..++.+.-.+..+-..+-+++++|-|=.+..... .+..+++++.++|+++|..-. =+|+-++...+++.+.
T Consensus 145 g~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~-~yc~~d~~~a~~l~~~ 217 (326)
T PRK11840 145 GCYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVM-VYCSDDPIAAKRLEDA 217 (326)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHhc
Confidence 4577777777777777888999888766654332 357899999999999998763 3677777777776543
No 185
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=38.39 E-value=2.9e+02 Score=24.72 Aligned_cols=107 Identities=19% Similarity=0.166 Sum_probs=57.0
Q ss_pred HHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCCCCccEEEEeeccCCCCC--------CCHHHHHHH
Q 021569 79 AAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWR--------LGRQSVLAA 150 (311)
Q Consensus 79 ~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~--------~~~~~i~~~ 150 (311)
+.++.|++.|...|.....-.. ++++ ..+++++ -.+++...-+. |.. .-.+.+.+.
T Consensus 86 ~vi~~al~~G~~iINsis~~~~---------~~~~-~l~~~~~-----~~vV~m~~~g~-p~~~~~~~~~~~~~~~~~~~ 149 (257)
T TIGR01496 86 EVARAALEAGADIINDVSGGQD---------PAML-EVAAEYG-----VPLVLMHMRGT-PRTMQENPHYEDVVEEVLRF 149 (257)
T ss_pred HHHHHHHHcCCCEEEECCCCCC---------chhH-HHHHHcC-----CcEEEEeCCCC-CcccccCCCcccHHHHHHHH
Confidence 3567777778877765432211 4444 4455554 35666543332 111 012334444
Q ss_pred HHHH---HHhhCCCCcceEEecCCCCC----ChHHHHHHHHHHHHcCccceEeecCCc
Q 021569 151 LKDS---LFRLGLSSVELYQLHWAGIW----GNEGFIDGLGDAVEQGLVKAVGVSNYS 201 (311)
Q Consensus 151 ~~~S---L~rL~~d~iDl~~lH~p~~~----~~~~~~~~l~~l~~~G~ir~iGvSn~~ 201 (311)
+++. +.+.|++.-|+++=--.... ..-++++.++++++.|.=-.+|+||-+
T Consensus 150 ~~~~i~~~~~~Gi~~~~iilDPg~gf~ks~~~~~~~l~~i~~l~~~~~p~l~G~SrkS 207 (257)
T TIGR01496 150 LEARAEELVAAGVAAERIILDPGIGFGKTPEHNLELLKHLEEFVALGYPLLVGASRKS 207 (257)
T ss_pred HHHHHHHHHHcCCCHHHEEEECCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEecccH
Confidence 5554 45567765555442211111 134567788888887766689999975
No 186
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=38.15 E-value=19 Score=24.85 Aligned_cols=16 Identities=13% Similarity=0.459 Sum_probs=14.7
Q ss_pred HHHHHHHhcCCCcchh
Q 021569 292 RIKELGENYSKTSTQF 307 (311)
Q Consensus 292 ~l~~iA~~~g~s~~qv 307 (311)
.+++||+++|+|+.+|
T Consensus 24 ~lkdIA~~Lgvs~~tI 39 (60)
T PF10668_consen 24 KLKDIAEKLGVSESTI 39 (60)
T ss_pred cHHHHHHHHCCCHHHH
Confidence 6899999999999887
No 187
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=37.90 E-value=2.4e+02 Score=25.14 Aligned_cols=83 Identities=19% Similarity=0.086 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhcCCCeeeeeeccCcCcC-------CccccchhHHHHHh-CCeEEEcccCccccccCCCCCCCCCCCCCC
Q 021569 204 RLRNAYEKLKKRGIPLASNQVNYSLIYR-------KPEENGVKAACDEL-GITLIAYCPIAQGALTGKYTPQNPPTGPRG 275 (311)
Q Consensus 204 ~l~~~~~~~~~~g~~~~~~Q~~~~~~~~-------~~~~~~l~~~~~~~-gi~v~a~spL~~G~Ltg~~~~~~~~~~~~~ 275 (311)
.+++.++.+++.| ++.+|+++..... ......+.+.++++ ++.+.+..|+..++..
T Consensus 11 ~l~~~l~~a~~~G--~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~-------------- 74 (279)
T cd00019 11 GLENALKRAKEIG--FDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLSVHAPYLINLAS-------------- 74 (279)
T ss_pred cHHHHHHHHHHcC--CCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCceeccCC--------------
Confidence 3444555555555 4455554432211 01122588889999 8888777765433211
Q ss_pred CCCchHhHhhHHHHHHHHHHHHHhcCCCc
Q 021569 276 RIYTAEYLRNLQPLLNRIKELGENYSKTS 304 (311)
Q Consensus 276 ~~~~~~~~~~~~~~~~~l~~iA~~~g~s~ 304 (311)
..++......+.+....++|++.|++.
T Consensus 75 --~~~~~r~~~~~~~~~~i~~A~~lG~~~ 101 (279)
T cd00019 75 --PDKEKREKSIERLKDEIERCEELGIRL 101 (279)
T ss_pred --CCHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 122334455566667778888888763
No 188
>PF01619 Pro_dh: Proline dehydrogenase; InterPro: IPR002872 The proline oxidase/dehydrogenase 1.5.99.8 from EC is responsible for the first step in the conversion of proline to glutamate for use as a carbon and nitrogen source. The enzyme requires FAD as a cofactor, and is induced by proline.; GO: 0004657 proline dehydrogenase activity, 0006537 glutamate biosynthetic process, 0006562 proline catabolic process, 0055114 oxidation-reduction process; PDB: 2G37_A 2EKG_B 4F9I_B 3HAZ_A 2FZM_A 3E2Q_A 3E2S_A 2FZN_A 1K87_A 1TJ2_A ....
Probab=37.74 E-value=54 Score=30.35 Aligned_cols=167 Identities=16% Similarity=0.260 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHcCCC-eEEcCCCCCCCcCCCCCchHHHHHHHHH---hccCCCCCccEEEEeeccCCCCCCCHHHHHHH
Q 021569 75 KAAKAAFDTSLDNGIT-FFDTAEVYGSRASFGAINSETLLGRFIK---ERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (311)
Q Consensus 75 ~~~~~~l~~Al~~Gi~-~~DTA~~Yg~g~s~~~~~sE~~lG~al~---~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~ 150 (311)
+...++++.|.+.|+. .||.=+.+-. +.++--+.+ ..... +..++++--.- -..+++.+.+.
T Consensus 92 ~~l~~i~~~A~~~~v~v~iDaE~~~~~---------~~~~~~~~~~~~~~~~~--~~~vg~tlQaY---L~~t~~~l~~l 157 (313)
T PF01619_consen 92 ERLRRICERAKEHGVFVLIDAEESWYQ---------DAILDLFLELMRKYNKG--WPNVGITLQAY---LKRTPDDLERL 157 (313)
T ss_dssp HHHHHHHHHHHHTTEEEEE----GGGH---------HHHHHHHHHHCCHHGTT----SEEEEEETT---BTTHHHHHHHH
T ss_pred HHHHHHHHHhhcCCcEEEEcCCCccch---------HHHHHHHHHHhhHhhCC--CCeEEEEEech---hhchHHHHHHH
Confidence 4677888999999988 5675444433 444433333 12211 23455555442 12456666666
Q ss_pred HHHHHHh---hCC-----CCcceEE----ec-CCCC--CC----hHHHHHHHHHHHHcCc-c--ceEeecCCcHHHHHHH
Q 021569 151 LKDSLFR---LGL-----SSVELYQ----LH-WAGI--WG----NEGFIDGLGDAVEQGL-V--KAVGVSNYSEKRLRNA 208 (311)
Q Consensus 151 ~~~SL~r---L~~-----d~iDl~~----lH-~p~~--~~----~~~~~~~l~~l~~~G~-i--r~iGvSn~~~~~l~~~ 208 (311)
++..-++ +|+ -|++-=- .| ++++ .+ .+.....+..+..++. . -+++|.+|+...+..+
T Consensus 158 ~~~a~~~g~~~~vRLVkGAY~e~E~~~a~~~g~~~~~~~~~k~~~d~~y~~~~~~l~~~~~~~~~~~~vATHn~~si~~a 237 (313)
T PF01619_consen 158 LELARRRGFRLGVRLVKGAYLESERKRAQQHGYPDPPAFTDKATTDANYRRLARLLLEGGDAPKVYPMVATHNERSIALA 237 (313)
T ss_dssp HHHHHHTTS-EEEEEE--SSHHHHHHHHHHTTTSS-SB-SSHHHHHHHHHHHHHHHHCTTTT--EEEEEE---HHHHHHH
T ss_pred HHHHHHcCCeEEEEEecCCCCCchhHHHHHcCCCCCCCCCchhhhHHHHHHHHHHHhcccccceeeeeccCCCHHHHHHH
Confidence 6655542 111 1211100 00 1221 11 2233455555555544 3 6899999999999999
Q ss_pred HHHHHhcCCCeeeeeeccCcCcCCccccchhHHHHHhCCeEEEcccCcc
Q 021569 209 YEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQ 257 (311)
Q Consensus 209 ~~~~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spL~~ 257 (311)
.+.++..++++.--+++|-.+.--.. ++.....+.|..|.-|.|.|.
T Consensus 238 ~~l~~~~~~~~~~~~~efq~L~Gm~d--~l~~~L~~~g~~v~~YvP~G~ 284 (313)
T PF01619_consen 238 LELAEELGIPPNDDRVEFQQLYGMAD--DLSRALAQAGYRVRKYVPYGP 284 (313)
T ss_dssp HHHHHCTT-GG--GGEEEEEETTSSH--HHHHHHHHHTSEEEEEEEESE
T ss_pred HHHHHHcCCCcccccEEeehhccCCH--HHHHHHHhCCCCEEEEEecCC
Confidence 99888887765223344443333222 477888899999999999883
No 189
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=37.65 E-value=3.5e+02 Score=25.40 Aligned_cols=88 Identities=9% Similarity=-0.078 Sum_probs=55.1
Q ss_pred cceEEecCCCCCChHHHHHHHHHHHHcCccc-eEeecCCcHHHHHHHHHHHHhcCCCeeeeeeccCcCcCCccccchhHH
Q 021569 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAA 241 (311)
Q Consensus 163 iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~~ 241 (311)
.++.++-.|-+ . +-++.+.+|++...+. ..|-|-++..++.++++. .-++++|+...-.---.+-..+...
T Consensus 213 ~~~~~iEeP~~--~-~d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~-----~~~d~~~~d~~~~GGi~~~~~i~~l 284 (368)
T TIGR02534 213 AGVELIEQPTP--A-ENREALARLTRRFNVPIMADESVTGPADALAIAKA-----SAADVFALKTTKSGGLLESKKIAAI 284 (368)
T ss_pred cChhheECCCC--c-ccHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHh-----CCCCEEEEcccccCCHHHHHHHHHH
Confidence 35556665532 2 2367777888876665 778888888888887543 2356667655432211111248888
Q ss_pred HHHhCCeEEEcccCccc
Q 021569 242 CDELGITLIAYCPIAQG 258 (311)
Q Consensus 242 ~~~~gi~v~a~spL~~G 258 (311)
|+.+|+.++..+.+.++
T Consensus 285 A~~~gi~~~~~~~~~s~ 301 (368)
T TIGR02534 285 AEAAGIALYGGTMLEGP 301 (368)
T ss_pred HHHcCCceeeecchhhH
Confidence 99999999876544333
No 190
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=37.29 E-value=50 Score=20.92 Aligned_cols=25 Identities=12% Similarity=0.408 Sum_probs=15.8
Q ss_pred HhhHHHHHH---HHHHHHHhcCCCcchh
Q 021569 283 LRNLQPLLN---RIKELGENYSKTSTQF 307 (311)
Q Consensus 283 ~~~~~~~~~---~l~~iA~~~g~s~~qv 307 (311)
.+...++++ .+.+||+.+|+|.+.|
T Consensus 11 ~~~i~~l~~~G~si~~IA~~~gvsr~Tv 38 (45)
T PF02796_consen 11 IEEIKELYAEGMSIAEIAKQFGVSRSTV 38 (45)
T ss_dssp HHHHHHHHHTT--HHHHHHHTTS-HHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHCcCHHHH
Confidence 334444443 5889999999998764
No 191
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=37.28 E-value=3.4e+02 Score=25.13 Aligned_cols=96 Identities=15% Similarity=0.063 Sum_probs=47.2
Q ss_pred cceEEecCCCCC--ChHHHHHHHHHHHHcCccceEeecC----CcHHH-HHHHHHHHHhcCCCeeeeeeccCcCc-CCcc
Q 021569 163 VELYQLHWAGIW--GNEGFIDGLGDAVEQGLVKAVGVSN----YSEKR-LRNAYEKLKKRGIPLASNQVNYSLIY-RKPE 234 (311)
Q Consensus 163 iDl~~lH~p~~~--~~~~~~~~l~~l~~~G~ir~iGvSn----~~~~~-l~~~~~~~~~~g~~~~~~Q~~~~~~~-~~~~ 234 (311)
|.-+.|-.-|+. +.....+.++.+++-|.|+.|.+.. .++.. -+++++.+++.|.. ..+-++.+-.. -..+
T Consensus 137 I~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~-v~i~l~~~h~~el~~~ 215 (321)
T TIGR03822 137 IWEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGKT-VYVALHANHARELTAE 215 (321)
T ss_pred ccEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCc-EEEEecCCChhhcCHH
Confidence 333445444442 3456777777888878776444433 11211 12222233334432 22333332100 0111
Q ss_pred ccchhHHHHHhCCeEEEcccCcccc
Q 021569 235 ENGVKAACDELGITLIAYCPIAQGA 259 (311)
Q Consensus 235 ~~~l~~~~~~~gi~v~a~spL~~G~ 259 (311)
...-++.+++.||.+..-++|..|.
T Consensus 216 ~~~ai~~L~~~Gi~v~~q~vLl~gv 240 (321)
T TIGR03822 216 ARAACARLIDAGIPMVSQSVLLRGV 240 (321)
T ss_pred HHHHHHHHHHcCCEEEEEeeEeCCC
Confidence 1135667778888888888887764
No 192
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=37.01 E-value=1.2e+02 Score=26.61 Aligned_cols=37 Identities=11% Similarity=0.174 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHH
Q 021569 176 NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLK 213 (311)
Q Consensus 176 ~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~ 213 (311)
..++.+.|+.|++.|.--.| +||.+...++.+++...
T Consensus 101 ~pg~~e~L~~L~~~g~~l~I-vT~~~~~~~~~~l~~~g 137 (253)
T TIGR01422 101 IPGVIEVIAYLRARGIKIGS-TTGYTREMMDVVAPEAA 137 (253)
T ss_pred CCCHHHHHHHHHHCCCeEEE-ECCCcHHHHHHHHHHHH
Confidence 44677888889999855556 88888888877765543
No 193
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=36.95 E-value=1.7e+02 Score=29.87 Aligned_cols=75 Identities=17% Similarity=0.083 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHHhhCCCCcceEEec-CCCCCChHHHHHHHHHHHHcCccceEeec-CCcHHHHHHHHHHHHhcCCCee
Q 021569 143 GRQSVLAALKDSLFRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGLVKAVGVS-NYSEKRLRNAYEKLKKRGIPLA 220 (311)
Q Consensus 143 ~~~~i~~~~~~SL~rL~~d~iDl~~lH-~p~~~~~~~~~~~l~~l~~~G~ir~iGvS-n~~~~~l~~~~~~~~~~g~~~~ 220 (311)
+.+.++.+ ..+|.|||=+.+.. .|...+.+.....+.+....-.++.+||- |-+++.+.++.+. ..++
T Consensus 12 ~~eda~~a-----~~~gaD~iGfIf~~~SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~-----~~ld 81 (610)
T PRK13803 12 DSALISKA-----VDMLPDFIGFIFYEKSPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKK-----NGID 81 (610)
T ss_pred cHHHHHHH-----HHcCCCEEEEEecCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHh-----cCCC
Confidence 45555544 34899999987654 34334445423444333333357889995 7788888888654 4689
Q ss_pred eeeeccC
Q 021569 221 SNQVNYS 227 (311)
Q Consensus 221 ~~Q~~~~ 227 (311)
++|++-+
T Consensus 82 ~vQLHG~ 88 (610)
T PRK13803 82 FVQLHGA 88 (610)
T ss_pred EEEECCC
Confidence 9999853
No 194
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=36.94 E-value=3.1e+02 Score=24.48 Aligned_cols=119 Identities=18% Similarity=0.094 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHHHHcCCCeEEcCCCCCC----------------CcCCCCCchHHHHHHHHHhccCCCCCccEEEEeecc
Q 021569 73 KMKAAKAAFDTSLDNGITFFDTAEVYGS----------------RASFGAINSETLLGRFIKERKQRDPEVEVTVATKFA 136 (311)
Q Consensus 73 ~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~----------------g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~ 136 (311)
+.++..++.+++-+.||.||=|...... +.. ++-.+|- .+.+. ...++|+|=.
T Consensus 54 ~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl----~n~~lL~-~~A~t-----gkPvIlSTG~- 122 (241)
T PF03102_consen 54 SEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDL----TNLPLLE-YIAKT-----GKPVILSTGM- 122 (241)
T ss_dssp -HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGT----T-HHHHH-HHHTT------S-EEEE-TT-
T ss_pred CHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccc----cCHHHHH-HHHHh-----CCcEEEECCC-
Confidence 4578899999999999999977532210 000 0112221 11211 1345555543
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCCcceEEecCCCCC--ChH-HHHHHHHHHHHcCccceEeecCCcHHHHHHHHHH
Q 021569 137 ALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW--GNE-GFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEK 211 (311)
Q Consensus 137 ~~~~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~--~~~-~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~ 211 (311)
.+.+.|.++++-..++- .-|+.++|-...+ +.+ --+..|..|++.=- --||.|.|+.....-+.++
T Consensus 123 -----stl~EI~~Av~~~~~~~---~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~g~~~~~~Av 191 (241)
T PF03102_consen 123 -----STLEEIERAVEVLREAG---NEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG-VPVGYSDHTDGIEAPIAAV 191 (241)
T ss_dssp -------HHHHHHHHHHHHHHC---T--EEEEEE-SSSS--GGG--TTHHHHHHHHST-SEEEEEE-SSSSHHHHHHH
T ss_pred -----CCHHHHHHHHHHHHhcC---CCCEEEEecCCCCCCChHHcChHHHHHHHHhcC-CCEEeCCCCCCcHHHHHHH
Confidence 35677777777664443 4689999976543 333 33666666665422 6689999987544444433
No 195
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=36.91 E-value=54 Score=31.62 Aligned_cols=99 Identities=15% Similarity=0.164 Sum_probs=51.6
Q ss_pred HHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeeeeeccCcCcCCccccchhHHHHHhC--CeEEEcccCc
Q 021569 179 FIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELG--ITLIAYCPIA 256 (311)
Q Consensus 179 ~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~g--i~v~a~spL~ 256 (311)
+.+++.+..++++ ++.+++++.+-..++.=.+.|+.|..+..-.|. +.++.+++.+ ++++.+ +
T Consensus 123 iYqa~~~~~~k~~----~~~~mt~d~~~~~ie~qa~~GVDfmTiHcGi~~--------~~~~~~~~~~R~~giVSR---G 187 (431)
T PRK13352 123 IYQAAVEAARKYG----SVVDMTEDDLFDVIEKQAKDGVDFMTIHCGVTR--------ETLERLKKSGRIMGIVSR---G 187 (431)
T ss_pred HHHHHHHHHhcCC----ChhhCCHHHHHHHHHHHHHhCCCEEEEccchhH--------HHHHHHHhcCCccCeecC---C
Confidence 3445545544333 566667777666655533455655554333221 3677777543 555543 3
Q ss_pred cccccCCCCCCCCCCCCCCCCCchHhHhhHHHHHHHHHHHHHhcCCCcc
Q 021569 257 QGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTST 305 (311)
Q Consensus 257 ~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~~ 305 (311)
+.+++.+..... .+ +.+.+..+.|-+|+++|++|++
T Consensus 188 Gs~~~~WM~~n~-~E------------NPlye~fD~lLeI~~~yDVtlS 223 (431)
T PRK13352 188 GSFLAAWMLHNN-KE------------NPLYEHFDYLLEILKEYDVTLS 223 (431)
T ss_pred HHHHHHHHHHcC-Cc------------CchHHHHHHHHHHHHHhCeeee
Confidence 445544332111 00 1133444578899999988764
No 196
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=36.85 E-value=2.4e+02 Score=23.48 Aligned_cols=107 Identities=16% Similarity=0.061 Sum_probs=55.9
Q ss_pred HHHHHHHcC-ccceEeecCCcHHHHH---HHHHHHHhc-CCCeeeeeeccCcCcCCc------cc------cchhHHHHH
Q 021569 182 GLGDAVEQG-LVKAVGVSNYSEKRLR---NAYEKLKKR-GIPLASNQVNYSLIYRKP------EE------NGVKAACDE 244 (311)
Q Consensus 182 ~l~~l~~~G-~ir~iGvSn~~~~~l~---~~~~~~~~~-g~~~~~~Q~~~~~~~~~~------~~------~~l~~~~~~ 244 (311)
.|.+....+ .|...|++..+..++. .+....... .....++++-.|=..... .+ ..+++.+++
T Consensus 26 ~l~~~~~~~~~v~N~gi~G~ts~~~~~~~~~~~~l~~~~~pdlVii~~G~ND~~~~~~~~~~~~~~~~~nl~~ii~~~~~ 105 (198)
T cd01821 26 ALPQYLDTGITVVNHAKGGRSSRSFRDEGRWDAILKLIKPGDYVLIQFGHNDQKPKDPEYTEPYTTYKEYLRRYIAEARA 105 (198)
T ss_pred HHHHHhCCCCEEEeCCCCCccHHHHHhCCcHHHHHhhCCCCCEEEEECCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 344433333 4667788888766543 222222221 124555666555433321 00 147888999
Q ss_pred hCCeEEEcccCccccccCCCCCCCCCCCCCCCCCchHhHhhHHHHHHHHHHHHHhcCCCc
Q 021569 245 LGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTS 304 (311)
Q Consensus 245 ~gi~v~a~spL~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~ 304 (311)
+|+.++-.+|....- +... . ...+...+..+.++++|+++|+..
T Consensus 106 ~~~~~il~tp~~~~~----~~~~-----~-------~~~~~~~~~~~~~~~~a~~~~~~~ 149 (198)
T cd01821 106 KGATPILVTPVTRRT----FDEG-----G-------KVEDTLGDYPAAMRELAAEEGVPL 149 (198)
T ss_pred CCCeEEEECCccccc----cCCC-----C-------cccccchhHHHHHHHHHHHhCCCE
Confidence 999988877754211 1000 0 001123344458889999998765
No 197
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=36.74 E-value=2.5e+02 Score=26.76 Aligned_cols=81 Identities=14% Similarity=0.090 Sum_probs=54.7
Q ss_pred ChHHHHHHHHH-HHHcC---ccceEeec--CCcHHHHHHHHHHHHhcCCCeeeeeeccCcCcCCccc-------cchhHH
Q 021569 175 GNEGFIDGLGD-AVEQG---LVKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE-------NGVKAA 241 (311)
Q Consensus 175 ~~~~~~~~l~~-l~~~G---~ir~iGvS--n~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~~~-------~~l~~~ 241 (311)
+.+++++++.+ +.+.| +|+++=+. |.+.++++++.+.++. .+..++=++||++...... ..+.+.
T Consensus 260 ~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~--~~~~VnlIpyn~~~~~~~~~ps~e~i~~F~~~ 337 (368)
T PRK14456 260 PLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASR--FFCKINLIDYNSIVNIKFEPVCSSTRERFRDR 337 (368)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhc--CCCeeEEeeeccCCCCCCCCCCHHHHHHHHHH
Confidence 45788888875 44555 24455444 5677788888887754 3456777899987654322 146777
Q ss_pred HHHhCCeEEEcccCcc
Q 021569 242 CDELGITLIAYCPIAQ 257 (311)
Q Consensus 242 ~~~~gi~v~a~spL~~ 257 (311)
++++|+.++.....+.
T Consensus 338 L~~~Gi~vtvR~~~G~ 353 (368)
T PRK14456 338 LLDAGLQVTVRKSYGT 353 (368)
T ss_pred HHHCCCcEEeeCCCCc
Confidence 8889999998877664
No 198
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=36.63 E-value=1.3e+02 Score=26.84 Aligned_cols=36 Identities=8% Similarity=0.174 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHH
Q 021569 176 NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKL 212 (311)
Q Consensus 176 ~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~ 212 (311)
..++.+.|+.|+++|..-.| +||.+...+...++.+
T Consensus 103 ~pg~~elL~~L~~~g~~l~I-~T~~~~~~~~~~l~~~ 138 (267)
T PRK13478 103 IPGVLEVIAALRARGIKIGS-TTGYTREMMDVVVPLA 138 (267)
T ss_pred CCCHHHHHHHHHHCCCEEEE-EcCCcHHHHHHHHHHH
Confidence 34577788888999865555 7777777777665543
No 199
>PRK13753 dihydropteroate synthase; Provisional
Probab=36.59 E-value=3.4e+02 Score=24.86 Aligned_cols=100 Identities=15% Similarity=0.163 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHHHHHhhCCCCcceEEe-cCCCC--CChH----HHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHh
Q 021569 142 LGRQSVLAALKDSLFRLGLSSVELYQL-HWAGI--WGNE----GFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKK 214 (311)
Q Consensus 142 ~~~~~i~~~~~~SL~rL~~d~iDl~~l-H~p~~--~~~~----~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~ 214 (311)
.+.+.+.+..++.+ .-|.|.||+=-- .+|.. .+.+ .+...++.+++.+. -|.|-+|.++.++++++.
T Consensus 22 ~~~d~a~~~a~~m~-~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~--~ISIDT~~~~va~~al~a--- 95 (279)
T PRK13753 22 LDPAGAVTAAIEML-RVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMH--RVSIDSFQPETQRYALKR--- 95 (279)
T ss_pred CCHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCC--cEEEECCCHHHHHHHHHc---
Confidence 34566666665544 347788887443 34543 2222 33467788887752 489999999999998653
Q ss_pred cCCCeeeeeeccCcCcCCccccchhHHHHHhCCeEEEcccC
Q 021569 215 RGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPI 255 (311)
Q Consensus 215 ~g~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spL 255 (311)
|..+ +|-+ +-+. . .++.+.|.+++++++...-.
T Consensus 96 -Gadi-INDV--sg~~-d---~~~~~vva~~~~~vVlmH~~ 128 (279)
T PRK13753 96 -GVGY-LNDI--QGFP-D---PALYPDIAEADCRLVVMHSA 128 (279)
T ss_pred -CCCE-EEeC--CCCC-c---hHHHHHHHHcCCCEEEEecC
Confidence 4443 2222 2222 1 14889999999998876543
No 200
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=36.43 E-value=1.7e+02 Score=29.26 Aligned_cols=54 Identities=17% Similarity=0.163 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccc-eEeecCC
Q 021569 145 QSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNY 200 (311)
Q Consensus 145 ~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~ 200 (311)
+...+.+.+.+++||+++ |.+.-. .++.-.+.+.+.+.+|.+.|.|- .-+--.|
T Consensus 73 ~~~~~~~~~~~~~l~i~~-d~~~~t-~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~ 127 (556)
T PRK12268 73 DKYHEEHKEDFKKLGISY-DLFTRT-TSPNHHEVVQEFFLKLYENGYIYKKTIEQAY 127 (556)
T ss_pred HHHHHHHHHHHHHcCCcC-CCCcCC-CCHHHHHHHHHHHHHHHHCCCeEEeeeEEEe
Confidence 445778899999999974 743211 11122567888999999999874 3333344
No 201
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=36.31 E-value=3.7e+02 Score=25.27 Aligned_cols=155 Identities=8% Similarity=-0.062 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHH
Q 021569 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (311)
Q Consensus 73 ~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~ 152 (311)
+.++..+.++.+.+.|++.|=.- .++...- ....+.+ +++++.-. .++.|.-=.. ..++.+...+.+
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik-~~~~~~~---~~di~~i-~~vR~~~G----~~~~l~vDan---~~~~~~~A~~~~- 209 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLH-PWGPGVV---RRDLKAC-LAVREAVG----PDMRLMHDGA---HWYSRADALRLG- 209 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe-cCCchhH---HHHHHHH-HHHHHHhC----CCCeEEEECC---CCcCHHHHHHHH-
Confidence 34666777788889999988652 2211000 0001222 33433221 2343333221 234544333222
Q ss_pred HHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccc-eEeecCCc-HHHHHHHHHHHHhcCCCeeeeeeccCcCc
Q 021569 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYS-EKRLRNAYEKLKKRGIPLASNQVNYSLIY 230 (311)
Q Consensus 153 ~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~-~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~ 230 (311)
+.|+.+ ++.++-.|- +.++ ++.+.+|+++-.|. ..|=+-++ +.++.++++. --++++|+..+..-
T Consensus 210 ~~l~~~-----~l~~iEeP~--~~~d-~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~-----~a~d~v~~d~~~~G 276 (368)
T cd03329 210 RALEEL-----GFFWYEDPL--REAS-ISSYRWLAEKLDIPILGTEHSRGALESRADWVLA-----GATDFLRADVNLVG 276 (368)
T ss_pred HHhhhc-----CCCeEeCCC--Cchh-HHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHh-----CCCCEEecCccccC
Confidence 233333 455555543 3333 57788888875554 34555566 7777777554 23667777655432
Q ss_pred CCccccchhHHHHHhCCeEEEcc
Q 021569 231 RKPEENGVKAACDELGITLIAYC 253 (311)
Q Consensus 231 ~~~~~~~l~~~~~~~gi~v~a~s 253 (311)
--.+-..+...|+++||.++..+
T Consensus 277 Git~~~~ia~~a~~~gi~~~~h~ 299 (368)
T cd03329 277 GITGAMKTAHLAEAFGLDVELHG 299 (368)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEC
Confidence 11112258899999999997654
No 202
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=36.30 E-value=1.5e+02 Score=29.11 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=11.5
Q ss_pred EeecCCcHHHHHHHHHHHHhcCC
Q 021569 195 VGVSNYSEKRLRNAYEKLKKRGI 217 (311)
Q Consensus 195 iGvSn~~~~~l~~~~~~~~~~g~ 217 (311)
+|.+++.-+-+++.++.+..+|+
T Consensus 88 ~G~~~~pddvv~~~v~~A~~~Gv 110 (448)
T PRK12331 88 LGYRNYADDVVESFVQKSVENGI 110 (448)
T ss_pred cccccCchhhHHHHHHHHHHCCC
Confidence 45555554455555444444444
No 203
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=36.15 E-value=4.8e+02 Score=29.13 Aligned_cols=126 Identities=6% Similarity=-0.001 Sum_probs=71.1
Q ss_pred hhCCCCcceEEecCCCCCChHHHHHHHHHHHH-cCcc--ceEeecCCcHHHHHHHHHHHHhcCCCeeeeeeccCcCcCCc
Q 021569 157 RLGLSSVELYQLHWAGIWGNEGFIDGLGDAVE-QGLV--KAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP 233 (311)
Q Consensus 157 rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~-~G~i--r~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~ 233 (311)
.-|-+.||+=.= .+ ..+.++.+..+..+++ +-.+ --|-|-+++++.++.+++.+. .++.+|-+..--.....
T Consensus 379 e~GA~iIDVn~~-~~-~vd~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~v~eaaLk~~~---G~~IINsIs~~~g~~~~ 453 (1178)
T TIGR02082 379 ENGAQILDINVD-YG-MLDGVAAMKRFLNLLASEPDISTVPLMLDSSEWAVLEAGLKCIQ---GKCIVNSISLKDGEERF 453 (1178)
T ss_pred HCCCCEEEECCC-CC-CCCHHHHHHHHHHHHHhccCCCCCeEEEeCCcHHHHHHHHHhcC---CCCEEEeCCCCCCCccH
Confidence 458899998542 11 1234444444444444 3223 236677888999999976532 24556554432121111
Q ss_pred cccchhHHHHHhCCeEEEcccCccccccCCCCCCCCCCCCCCCCCchHhHhhHHHHHHHHHHHHHh-cCCCcchhcc
Q 021569 234 EENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGEN-YSKTSTQFSV 309 (311)
Q Consensus 234 ~~~~l~~~~~~~gi~v~a~spL~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iA~~-~g~s~~qvaL 309 (311)
.++++.|+++|..++...--..|. +...++..+.++++.+.+.+ +|+++..+.+
T Consensus 454 --~~~~~l~~~yga~vV~m~~de~G~--------------------p~t~e~r~~i~~~~~~~~~~~~Gi~~edIi~ 508 (1178)
T TIGR02082 454 --IETAKLIKEYGAAVVVMAFDEEGQ--------------------ARTADRKIEICKRAYNILTEKVGFPPEDIIF 508 (1178)
T ss_pred --HHHHHHHHHhCCCEEEEecCCCCC--------------------CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEE
Confidence 159999999999999864322331 11111223345566666655 9999887754
No 204
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=36.13 E-value=3.3e+02 Score=24.63 Aligned_cols=127 Identities=17% Similarity=0.194 Sum_probs=74.6
Q ss_pred hhHHHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHH
Q 021569 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (311)
Q Consensus 72 ~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~ 151 (311)
.+.++..++++.+.+.|+..|.- .| |+---+..-.+++.. +++.+ -.++.|+|-.. .+ ...
T Consensus 40 ls~eei~~~i~~~~~~gi~~I~~---tG-GEPll~~~l~~iv~~-l~~~g----~~~v~i~TNG~---------ll-~~~ 100 (302)
T TIGR02668 40 LSPEEIERIVRVASEFGVRKVKI---TG-GEPLLRKDLIEIIRR-IKDYG----IKDVSMTTNGI---------LL-EKL 100 (302)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEE---EC-cccccccCHHHHHHH-HHhCC----CceEEEEcCch---------HH-HHH
Confidence 46688888999999999987753 23 321111111233332 33322 13677777541 11 122
Q ss_pred HHHHHhhCCCCcceEEecCCCC---------CChHHHHHHHHHHHHcCc----cceEeecCCcHHHHHHHHHHHHhcCCC
Q 021569 152 KDSLFRLGLSSVELYQLHWAGI---------WGNEGFIDGLGDAVEQGL----VKAVGVSNYSEKRLRNAYEKLKKRGIP 218 (311)
Q Consensus 152 ~~SL~rL~~d~iDl~~lH~p~~---------~~~~~~~~~l~~l~~~G~----ir~iGvSn~~~~~l~~~~~~~~~~g~~ 218 (311)
-..|.+.|++.|- +-++.+++ ...+.+++.++.+++.|. |..+.+.+.+.+++.++++.+...|+.
T Consensus 101 ~~~l~~~g~~~v~-iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i~~v~~~g~n~~ei~~~~~~~~~~g~~ 179 (302)
T TIGR02668 101 AKKLKEAGLDRVN-VSLDTLDPEKYKKITGRGALDRVIEGIESAVDAGLTPVKLNMVVLKGINDNEIPDMVEFAAEGGAI 179 (302)
T ss_pred HHHHHHCCCCEEE-EEecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhcCCE
Confidence 3345566665543 22344332 136789999999999984 234555557889999999988877654
No 205
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=36.02 E-value=3.8e+02 Score=25.27 Aligned_cols=95 Identities=11% Similarity=0.093 Sum_probs=63.2
Q ss_pred CCcceEEecCCCC------------CChHHHHHHHHH-HHHcCc---cceEeec--CCcHHHHHHHHHHHHhcCCCeeee
Q 021569 161 SSVELYQLHWAGI------------WGNEGFIDGLGD-AVEQGL---VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASN 222 (311)
Q Consensus 161 d~iDl~~lH~p~~------------~~~~~~~~~l~~-l~~~G~---ir~iGvS--n~~~~~l~~~~~~~~~~g~~~~~~ 222 (311)
+....+-||.+++ ++.+++++++.+ +.+.|+ |+++=+- |.+.+.++++.+.++. ++..++
T Consensus 211 ~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~~La~~l~~--l~~~Vn 288 (345)
T PRK14457 211 QFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAEELANLLRG--FQSHVN 288 (345)
T ss_pred ceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHHHHHHHHhc--CCCeEE
Confidence 4457788998875 236677877755 455563 5665554 5677888888877653 456788
Q ss_pred eeccCcCcCCc----ccc---chhHHHHHhCCeEEEcccCcc
Q 021569 223 QVNYSLIYRKP----EEN---GVKAACDELGITLIAYCPIAQ 257 (311)
Q Consensus 223 Q~~~~~~~~~~----~~~---~l~~~~~~~gi~v~a~spL~~ 257 (311)
=++||++.... ..+ .+.+.++++||.+......+.
T Consensus 289 LIPynp~~~~~~~~ps~e~i~~f~~~L~~~Gi~vtvR~~~G~ 330 (345)
T PRK14457 289 LIPYNPIDEVEFQRPSPKRIQAFQRVLEQRGVAVSVRASRGL 330 (345)
T ss_pred EecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCC
Confidence 89999875322 111 256667788999987766653
No 206
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=35.58 E-value=3.2e+02 Score=24.24 Aligned_cols=95 Identities=18% Similarity=0.200 Sum_probs=45.5
Q ss_pred HHhhCCCCcceEEecCCC-----CCChHHHHHHHHHHHHcCc-cceEeecCC--------c-------HHHHHHHHHHHH
Q 021569 155 LFRLGLSSVELYQLHWAG-----IWGNEGFIDGLGDAVEQGL-VKAVGVSNY--------S-------EKRLRNAYEKLK 213 (311)
Q Consensus 155 L~rL~~d~iDl~~lH~p~-----~~~~~~~~~~l~~l~~~G~-ir~iGvSn~--------~-------~~~l~~~~~~~~ 213 (311)
.+++|.++|++....... .....+.-+..+.+.+.|. |-.++++++ + .+.++++++.+.
T Consensus 25 ~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~~~~i~~a~ 104 (284)
T PRK13210 25 AKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERALEIMKKAIRLAQ 104 (284)
T ss_pred HHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 457898888885432111 0122223333345666674 334443321 2 244566666677
Q ss_pred hcCCCeeeeeeccCcCc-CCcc---------ccchhHHHHHhCCeEE
Q 021569 214 KRGIPLASNQVNYSLIY-RKPE---------ENGVKAACDELGITLI 250 (311)
Q Consensus 214 ~~g~~~~~~Q~~~~~~~-~~~~---------~~~l~~~~~~~gi~v~ 250 (311)
..|.+..++- .+.... ...+ -.++.++++++||.+.
T Consensus 105 ~lG~~~v~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~ 150 (284)
T PRK13210 105 DLGIRTIQLA-GYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLA 150 (284)
T ss_pred HhCCCEEEEC-CcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 6666543321 111111 1000 1247778888888654
No 207
>PRK07360 FO synthase subunit 2; Reviewed
Probab=35.11 E-value=3.7e+02 Score=25.45 Aligned_cols=22 Identities=9% Similarity=0.125 Sum_probs=15.7
Q ss_pred chhHHHHHhCCeEEEcccCccc
Q 021569 237 GVKAACDELGITLIAYCPIAQG 258 (311)
Q Consensus 237 ~l~~~~~~~gi~v~a~spL~~G 258 (311)
+.++.+++.|+.+-+...++.|
T Consensus 205 ~~i~~a~~~Gl~~~sg~i~G~g 226 (371)
T PRK07360 205 EIVKTAHKLGLPTTSTMMYGHV 226 (371)
T ss_pred HHHHHHHHcCCCceeeEEeeCC
Confidence 5788889999988665555543
No 208
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=35.07 E-value=1.6e+02 Score=28.33 Aligned_cols=84 Identities=10% Similarity=-0.077 Sum_probs=54.9
Q ss_pred cceEEecCCCCCChHHHHHHHHHHHHcCccc-eEeecCCcHHHHHHHHHHHHhcCCCeeeeeeccCcCcCCccccchhHH
Q 021569 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAA 241 (311)
Q Consensus 163 iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~~ 241 (311)
.++.++-.|-+ .+-++.+.+|++.-.|. ..|=|-++...++++++. --++++|+...-.---.+-..+.++
T Consensus 232 ~~l~~iEeP~~---~~d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~-----~a~dii~~d~~~~GGit~~~kia~l 303 (404)
T PRK15072 232 YRLFWLEDPTP---AENQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEE-----QLIDYIRTTVTHAGGITHLRRIADF 303 (404)
T ss_pred cCCcEEECCCC---ccCHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHc-----CCCCEEecCccccCcHHHHHHHHHH
Confidence 46666766532 12367788888886665 778888899998888653 2366777655432211111247889
Q ss_pred HHHhCCeEEEccc
Q 021569 242 CDELGITLIAYCP 254 (311)
Q Consensus 242 ~~~~gi~v~a~sp 254 (311)
|+.+|+.++.++.
T Consensus 304 A~~~gi~~~~h~~ 316 (404)
T PRK15072 304 AALYQVRTGSHGP 316 (404)
T ss_pred HHHcCCceeeccC
Confidence 9999999987644
No 209
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=35.07 E-value=1.8e+02 Score=29.02 Aligned_cols=106 Identities=18% Similarity=0.204 Sum_probs=55.5
Q ss_pred CCHHHHHHHHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcC---------c-cceEeecCCcHHHHHHHHHH
Q 021569 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG---------L-VKAVGVSNYSEKRLRNAYEK 211 (311)
Q Consensus 142 ~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G---------~-ir~iGvSn~~~~~l~~~~~~ 211 (311)
++.+. +..+-+.|.++|+|+|.+-+ |.. ..+-.++++.+.+.+ + .+-.+++....+.++.+++.
T Consensus 103 fs~ee-Ki~Ia~~L~~~GVd~IEvG~---Pa~--s~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~~~dId~a~~a 176 (503)
T PLN03228 103 LTPPQ-KLEIARQLAKLRVDIMEVGF---PGS--SEEEFEAVKTIAKTVGNEVDEETGYVPVICGIARCKKRDIEAAWEA 176 (503)
T ss_pred CCHHH-HHHHHHHHHHcCCCEEEEeC---CCC--CHHHHHHHHHHHHhcccccccccccceEEeeecccCHhhHHHHHHh
Confidence 44443 34455669999998888744 432 222344444444332 1 34457777777788888765
Q ss_pred HHhcCCCeeee-------eeccCcCcCCccc-----cchhHHHHHhCCeEEEccc
Q 021569 212 LKKRGIPLASN-------QVNYSLIYRKPEE-----NGVKAACDELGITLIAYCP 254 (311)
Q Consensus 212 ~~~~g~~~~~~-------Q~~~~~~~~~~~~-----~~l~~~~~~~gi~v~a~sp 254 (311)
....+.+-..+ ++++++-.. .++ .+.+++++++|...+.+++
T Consensus 177 ~~~a~~~~V~i~i~~Sd~h~~~kl~~s-~ee~l~~~~~~V~~Ak~~G~~~v~f~~ 230 (503)
T PLN03228 177 LKYAKRPRILAFTSTSDIHMKYKLKKT-KEEVIEMAVSSIRYAKSLGFHDIQFGC 230 (503)
T ss_pred hcccCCCEEEEEecCCHHHHHHHhCCC-HHHHHHHHHHHHHHHHHcCCceEEecc
Confidence 33222221111 222222111 110 1478899999976555555
No 210
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=35.00 E-value=3.2e+02 Score=25.62 Aligned_cols=59 Identities=19% Similarity=0.202 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCcceEEecC-CCC---------CChHHHH-HHHHHHHHcCccceEeecCCc
Q 021569 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHW-AGI---------WGNEGFI-DGLGDAVEQGLVKAVGVSNYS 201 (311)
Q Consensus 141 ~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~-p~~---------~~~~~~~-~~l~~l~~~G~ir~iGvSn~~ 201 (311)
..+.+.+++.++..+ +|+.++|.+|.+.- |.. .+.++.+ .+.+.|.+.|. ..+++|||.
T Consensus 161 gqt~~~~~~~l~~~~-~l~~~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy-~~yeis~fa 230 (350)
T PRK08446 161 LDNKKLLKEELKLAK-ELPINHLSAYSLTIEENTPFFEKNHKKKDDENLAKFFIEQLEELGF-KQYEISNFG 230 (350)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEeccceecCCChhHHhhhcCCCHHHHHHHHHHHHHHCCC-cEEEeehhh
Confidence 467888888887655 59999999988763 321 0122333 33455666675 457888875
No 211
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.89 E-value=1.1e+02 Score=31.57 Aligned_cols=70 Identities=10% Similarity=0.128 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHc--CccceEeecCCcHHHHHHHHHHH
Q 021569 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ--GLVKAVGVSNYSEKRLRNAYEKL 212 (311)
Q Consensus 142 ~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~--G~ir~iGvSn~~~~~l~~~~~~~ 212 (311)
.+-+.|++-++.....-....--+|+|+..+... .+.+++|.+..++ +.+..|.+||....-+.-+.+.|
T Consensus 104 ~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls-~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRC 175 (700)
T PRK12323 104 RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT-NHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRC 175 (700)
T ss_pred CCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC-HHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHH
Confidence 3456677666655444334456688888766433 3466777777777 88999999998766666665554
No 212
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=34.86 E-value=3.3e+02 Score=24.26 Aligned_cols=23 Identities=9% Similarity=0.228 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHcCCCeEEcC
Q 021569 73 KMKAAKAAFDTSLDNGITFFDTA 95 (311)
Q Consensus 73 ~~~~~~~~l~~Al~~Gi~~~DTA 95 (311)
+.++..++++.-.+.|+..|+..
T Consensus 20 ~~~~k~~i~~~L~~~Gv~~iEvg 42 (263)
T cd07943 20 TLEQVRAIARALDAAGVPLIEVG 42 (263)
T ss_pred CHHHHHHHHHHHHHcCCCEEEee
Confidence 34788889999999999999987
No 213
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=34.78 E-value=44 Score=34.12 Aligned_cols=38 Identities=16% Similarity=0.236 Sum_probs=33.0
Q ss_pred HHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccc
Q 021569 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK 193 (311)
Q Consensus 154 SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir 193 (311)
.|+.||++ |++-+|+.|+.+.+....+|+.|+..|-+.
T Consensus 414 ~Lkalgi~--d~l~F~f~d~P~~~~l~~AL~~L~~lgald 451 (674)
T KOG0922|consen 414 QLKALGIN--DPLRFPFIDPPPPEALEEALEELYSLGALD 451 (674)
T ss_pred HHHhcCCC--CcccCCCCCCCChHHHHHHHHHHHhcCccc
Confidence 48899998 999999999888888999999999877665
No 214
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=34.66 E-value=3.1e+02 Score=23.83 Aligned_cols=75 Identities=15% Similarity=0.115 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHhhCCCC--cceEEecCCCCCChHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeee
Q 021569 144 RQSVLAALKDSLFRLGLSS--VELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (311)
Q Consensus 144 ~~~i~~~~~~SL~rL~~d~--iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~ 221 (311)
...+.+.+++.+++++..+ +++++.... .+.+...+.++.+...+ +..|=+...+...+...++.+...|+|+..
T Consensus 14 ~~~~~~gi~~~a~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~l~~~~-vDgiii~~~~~~~~~~~i~~~~~~gIpvV~ 90 (274)
T cd06311 14 TAGIVWHAQAAAKKLEAAYPDVEFILVTAS--NDTEQQNAQQDLLINRK-IDALVILPFESAPLTQPVAKAKKAGIFVVV 90 (274)
T ss_pred HHHHHHHHHHHHHHhhhhCCCeEEEEEcCC--CCHHHHHHHHHHHHHcC-CCEEEEeCCCchhhHHHHHHHHHCCCeEEE
Confidence 4567778888888886544 344443222 23333444455555543 566666655544444444445555666544
No 215
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=34.64 E-value=2.9e+02 Score=24.98 Aligned_cols=109 Identities=11% Similarity=0.144 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCcceEEe----cCCCCCChHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcC
Q 021569 141 RLGRQSVLAALKDSLFRLGLSSVELYQL----HWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRG 216 (311)
Q Consensus 141 ~~~~~~i~~~~~~SL~rL~~d~iDl~~l----H~p~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g 216 (311)
..+.+.+++-++..++.+|++.|=+.-- +........++++...+......--.+|++..+..+..++.+.+++.|
T Consensus 17 ~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~G 96 (288)
T cd00954 17 EINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELG 96 (288)
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcC
Q ss_pred CCeeeeeeccCcCcCCccccchhHHHHHh-----CCeEEEc
Q 021569 217 IPLASNQVNYSLIYRKPEENGVKAACDEL-----GITLIAY 252 (311)
Q Consensus 217 ~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~-----gi~v~a~ 252 (311)
..-.++-.+|..-..+.+ +++++++- ++.++.|
T Consensus 97 ad~v~~~~P~y~~~~~~~---i~~~~~~v~~a~~~lpi~iY 134 (288)
T cd00954 97 YDAISAITPFYYKFSFEE---IKDYYREIIAAAASLPMIIY 134 (288)
T ss_pred CCEEEEeCCCCCCCCHHH---HHHHHHHHHHhcCCCCEEEE
No 216
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=34.23 E-value=1.1e+02 Score=26.08 Aligned_cols=90 Identities=13% Similarity=0.186 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCCCCccEEEEeeccCCCC------CCCHHHHHH
Q 021569 76 AAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPW------RLGRQSVLA 149 (311)
Q Consensus 76 ~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~------~~~~~~i~~ 149 (311)
+..+.|. -+++-+-.+|+-.+...-.- ++.+-.+++.....-|.--|++++-+..... ....+..++
T Consensus 50 ~~a~~ia-~~~a~~~~ld~~~N~~~~~~------~~~~~~fv~~iR~~hP~tPIllv~~~~~~~~~~~~~~~~~~~~~~~ 122 (178)
T PF14606_consen 50 EVADLIA-EIDADLIVLDCGPNMSPEEF------RERLDGFVKTIREAHPDTPILLVSPIPYPAGYFDNSRGETVEEFRE 122 (178)
T ss_dssp HHHHHHH-HS--SEEEEEESHHCCTTTH------HHHHHHHHHHHHTT-SSS-EEEEE----TTTTS--TTS--HHHHHH
T ss_pred HHHHHHh-cCCCCEEEEEeecCCCHHHH------HHHHHHHHHHHHHhCCCCCEEEEecCCccccccCchHHHHHHHHHH
Confidence 3444444 33666667777666433111 3444455554433324567888887754321 223456677
Q ss_pred HHHHHHHhh-CCCCcceEEecCCC
Q 021569 150 ALKDSLFRL-GLSSVELYQLHWAG 172 (311)
Q Consensus 150 ~~~~SL~rL-~~d~iDl~~lH~p~ 172 (311)
.+++..+.| .-..=+||+++..+
T Consensus 123 ~~r~~v~~l~~~g~~nl~~l~g~~ 146 (178)
T PF14606_consen 123 ALREAVEQLRKEGDKNLYYLDGEE 146 (178)
T ss_dssp HHHHHHHHHHHTT-TTEEEE-HHH
T ss_pred HHHHHHHHHHHcCCCcEEEeCchh
Confidence 777777777 22356888888654
No 217
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=34.20 E-value=1.4e+02 Score=31.64 Aligned_cols=97 Identities=12% Similarity=0.083 Sum_probs=54.6
Q ss_pred CCHHHHHHHHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHc--CccceEeecCCcHHHHHHHHHHHHhcCCCe
Q 021569 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ--GLVKAVGVSNYSEKRLRNAYEKLKKRGIPL 219 (311)
Q Consensus 142 ~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~--G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~ 219 (311)
.+.+.|++-++...........-+|+|+..+... .+.+.+|.+..++ ..++.|-+||....-+.-+.+.
T Consensus 99 rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT-~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSR-------- 169 (830)
T PRK07003 99 RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT-NHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR-------- 169 (830)
T ss_pred ccHHHHHHHHHHHHhccccCCceEEEEeChhhCC-HHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhh--------
Confidence 3455666666654433322345688887766433 3457777777777 5899999999754444444332
Q ss_pred eeeeeccCcCcCCccccchhHHHHHhCCe
Q 021569 220 ASNQVNYSLIYRKPEENGVKAACDELGIT 248 (311)
Q Consensus 220 ~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~ 248 (311)
+.++.|..+....-..-|...|++.||.
T Consensus 170 -Cq~f~Fk~Ls~eeIv~~L~~Il~~EgI~ 197 (830)
T PRK07003 170 -CLQFNLKQMPAGHIVSHLERILGEERIA 197 (830)
T ss_pred -eEEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 3455555554322111233445555654
No 218
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=34.16 E-value=3.1e+02 Score=25.31 Aligned_cols=52 Identities=8% Similarity=0.132 Sum_probs=39.9
Q ss_pred CcHHHHHHHHHHHHhcCCCeeeeeeccCcCcCCccccchhHHHHHhCCeEEEcccCccc
Q 021569 200 YSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQG 258 (311)
Q Consensus 200 ~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spL~~G 258 (311)
-++.+|.++.+.+++.+++..+.+..++.- -+-.++++.|+.++...||+.+
T Consensus 236 ps~~~l~~l~~~ik~~~v~~If~e~~~~~~-------~~~~la~e~g~~v~~ldpl~~~ 287 (311)
T PRK09545 236 PGAQRLHEIRTQLVEQKATCVFAEPQFRPA-------VIESVAKGTSVRMGTLDPLGTN 287 (311)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCCChH-------HHHHHHHhcCCeEEEecccccc
Confidence 378999999999998888888877665541 2456678889998887888865
No 219
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=34.06 E-value=76 Score=25.01 Aligned_cols=60 Identities=23% Similarity=0.351 Sum_probs=32.8
Q ss_pred Eeec-CCcHHHHHHHHHH-HHhcCCCeeeeeeccCcCcCCccccchhHHHHHhCCeEEEcccC
Q 021569 195 VGVS-NYSEKRLRNAYEK-LKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPI 255 (311)
Q Consensus 195 iGvS-n~~~~~l~~~~~~-~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spL 255 (311)
||.. +-+.+.+.+++.. ++..++.+..+-.--++-... .+.++++++++.|+.+..|++=
T Consensus 6 iGcrr~~~~~~i~~ai~~~l~~~~~~~~~i~~iasi~~K~-~E~~l~~~A~~l~~~~~~~~~e 67 (121)
T PF01890_consen 6 IGCRRGAPAEEIEEAIEQALAEAGLSPRSIAAIASIDIKA-DEPGLLELAEELGIPLRFFSAE 67 (121)
T ss_dssp EEE-SS--HHHHHHHHHHHHHHCT--GGGEEEEEESSSSS---HHHHHHHHHCTSEEEEE-HH
T ss_pred eCcCCCCCHHHHHHHHHHHHHHcCCChhhccEEEeccccC-CCHHHHHHHHHhCCCeEEECHH
Confidence 4443 3455666665554 444555544444444443333 3447999999999999998763
No 220
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=33.63 E-value=2.8e+02 Score=26.27 Aligned_cols=90 Identities=11% Similarity=0.091 Sum_probs=60.3
Q ss_pred EEecCCCC------------CChHHHHHHHHHHHHcCc----cceEee--cCCcHHHHHHHHHHHHhcCCCeeeeeeccC
Q 021569 166 YQLHWAGI------------WGNEGFIDGLGDAVEQGL----VKAVGV--SNYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (311)
Q Consensus 166 ~~lH~p~~------------~~~~~~~~~l~~l~~~G~----ir~iGv--Sn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~ 227 (311)
+-||.+++ .+.++++++++++.+.+. |+++=+ -|.+.++++++.+.++. .+..++=++||
T Consensus 223 iSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~--l~~~VnLIPyn 300 (356)
T PRK14455 223 ISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKG--IKCHVNLIPVN 300 (356)
T ss_pred eccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhc--CCCcEEEEecC
Confidence 55777764 235889999998877542 345433 46677889998887654 34567778888
Q ss_pred cCcCCc----ccc---chhHHHHHhCCeEEEcccCcc
Q 021569 228 LIYRKP----EEN---GVKAACDELGITLIAYCPIAQ 257 (311)
Q Consensus 228 ~~~~~~----~~~---~l~~~~~~~gi~v~a~spL~~ 257 (311)
++.... ... .+.+.++++||.+......+.
T Consensus 301 p~~~~ky~~ps~e~l~~f~~~L~~~gi~v~ir~~~g~ 337 (356)
T PRK14455 301 PVPERDYVRTPKEDIFAFEDTLKKNGVNCTIRREHGT 337 (356)
T ss_pred cCCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCc
Confidence 876421 111 356668889999987776654
No 221
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=33.46 E-value=2.1e+02 Score=25.59 Aligned_cols=70 Identities=11% Similarity=-0.033 Sum_probs=50.0
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCcceEEecCCCC--CChHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHH
Q 021569 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYE 210 (311)
Q Consensus 140 ~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~--~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~ 210 (311)
..++.+.-.+..+-..+-+++++|-|=.+-.++. .+.-+++++-|.|+++|.+-. =-++-++-..+++.+
T Consensus 78 Gc~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~Vl-PY~~dD~v~arrLee 149 (262)
T COG2022 78 GCRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVL-PYTTDDPVLARRLEE 149 (262)
T ss_pred ccCCHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEEe-eccCCCHHHHHHHHh
Confidence 3567777777777888889999999877766554 357799999999999997642 234445544444433
No 222
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=33.45 E-value=2.6e+02 Score=26.92 Aligned_cols=88 Identities=17% Similarity=0.142 Sum_probs=49.0
Q ss_pred CcceEEecCCCCCChHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeeeeeccCcCcCCccccchhHH
Q 021569 162 SVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAA 241 (311)
Q Consensus 162 ~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~~ 241 (311)
.+|++.+|.-...|.++..+..++..+.=.+ -+=++..+++.++++++.+... +|-..-..- .+ -+++.+.
T Consensus 69 ~~D~Ialr~~S~DPae~fa~~vk~V~~a~~~-PLIL~~~D~evl~aale~~~~~--kpLL~aAt~----eN--yk~m~~l 139 (386)
T PF03599_consen 69 GADMIALRLESGDPAEEFAKAVKKVAEAVDV-PLILCGCDPEVLKAALEACAGK--KPLLYAATE----EN--YKAMAAL 139 (386)
T ss_dssp E-SEEEEE-GGGSTHHHHHHHHHHHHHC-SS-EEEEESSHHHHHHHHHHHTTTS----EEEEEBT----TT--HHHHHHH
T ss_pred cccEEEEEecCCChHHHHHHHHHHHHHhcCC-CEEEEeCCHHHHHHHHHHhCcC--CcEEeEcCH----HH--HHHHHHH
Confidence 5677777764332346666666666654333 3334445888888888776432 233221111 11 1258889
Q ss_pred HHHhCCeEEEcccCccc
Q 021569 242 CDELGITLIAYCPIAQG 258 (311)
Q Consensus 242 ~~~~gi~v~a~spL~~G 258 (311)
|+++|..+++++|..-.
T Consensus 140 A~~y~~pl~v~sp~Dln 156 (386)
T PF03599_consen 140 AKEYGHPLIVSSPIDLN 156 (386)
T ss_dssp HHHCT-EEEEE-SSCHH
T ss_pred HHHcCCeEEEEecccHH
Confidence 99999999999887643
No 223
>KOG2534 consensus DNA polymerase IV (family X) [Replication, recombination and repair]
Probab=33.43 E-value=1.6e+02 Score=27.49 Aligned_cols=124 Identities=11% Similarity=0.040 Sum_probs=66.7
Q ss_pred CcceEEecCCCCCChHHHHH-HHHHHHHcCccceEe--ecCCcHHHHHHHHHHHHhcCCCeeeeeec-------cCcCcC
Q 021569 162 SVELYQLHWAGIWGNEGFID-GLGDAVEQGLVKAVG--VSNYSEKRLRNAYEKLKKRGIPLASNQVN-------YSLIYR 231 (311)
Q Consensus 162 ~iDl~~lH~p~~~~~~~~~~-~l~~l~~~G~ir~iG--vSn~~~~~l~~~~~~~~~~g~~~~~~Q~~-------~~~~~~ 231 (311)
=||+++-|-........++. -|..+.++|+|.++= .|+...-++....+.....+--+-+.+++ |+-++.
T Consensus 189 DvD~LithP~~~s~~~~~~~~l~~~le~~g~il~~~~~~S~~Ek~~l~~~~s~~~~~~~~mgv~~LPr~~~~~~~~S~n~ 268 (353)
T KOG2534|consen 189 DVDFLITHPGSTSTEAKLLQLLMILLEKKGLLLYYDQLHSCGEKLRLPSRKSALDHFKKFMGVFRLPRQRVDSDQSSWNE 268 (353)
T ss_pred CeeEEEeCCCCCchhhhHHHHHHHHHHhcCeEEEEeeeccccccccccchhhhHhhhhhEEEEEEcCcccccccccccCC
Confidence 37888887433222334443 456778899998654 44443222211111111001012223333 222222
Q ss_pred CccccchhHHHHHhCCeEEEcccCccccccCCCCCCCCCCCCCCCCCchHhHhhHHHHHHHHHHHHHhcCCCcchhccCC
Q 021569 232 KPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQFSVDR 311 (311)
Q Consensus 232 ~~~~~~l~~~~~~~gi~v~a~spL~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~~qvaL~~ 311 (311)
.+. -.|+.-+|.++.|+=++.|+|- +++. ..|+ ..|+..|.+.|.+..+-+|.+
T Consensus 269 ~~~-----~~~rRvDivv~P~~~~~~alLg--------wTGS--~~Fn-----------R~lR~~A~~kG~~l~~h~L~~ 322 (353)
T KOG2534|consen 269 GKG-----WKARRVDIVVCPYDEFGFALLG--------WTGS--KEFN-----------RDLRRYATHKGFSLDEHALFD 322 (353)
T ss_pred CCC-----CceeeeEEEEechHHcceeeee--------ecch--HHHH-----------HHHHHHHHhcCceeccccccc
Confidence 222 2578889999999999999872 1111 1222 268888999999988877753
No 224
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=33.40 E-value=3.1e+02 Score=23.43 Aligned_cols=135 Identities=13% Similarity=0.085 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHH
Q 021569 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (311)
Q Consensus 73 ~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~ 152 (311)
+.++..++++.+.+.|+.-+=+.+.+ =+...+.++. ..+.+.+=.+........+.....++
T Consensus 15 t~~~i~~~~~~a~~~~~~av~v~p~~-----------v~~~~~~l~~-------~~~~v~~~~~fp~g~~~~~~k~~eve 76 (203)
T cd00959 15 TEEDIRKLCDEAKEYGFAAVCVNPCF-----------VPLAREALKG-------SGVKVCTVIGFPLGATTTEVKVAEAR 76 (203)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcHHH-----------HHHHHHHcCC-------CCcEEEEEEecCCCCCcHHHHHHHHH
Confidence 45888999999999776655433222 1222333322 34666665554323344566667788
Q ss_pred HHHHhhCCCCcceEEecCCC-CCChHHHHHHHHHHHHc--Cccc--eEeecCCcHHHHHHHHHHHHhcCCCeeeeeec--
Q 021569 153 DSLFRLGLSSVELYQLHWAG-IWGNEGFIDGLGDAVEQ--GLVK--AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVN-- 225 (311)
Q Consensus 153 ~SL~rL~~d~iDl~~lH~p~-~~~~~~~~~~l~~l~~~--G~ir--~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~-- 225 (311)
+.++ +|.|-||+++-=..- ....+.+++.|.++++. |+.- -+...-.+.+++..+.+.+.+.|. +.+...
T Consensus 77 ~A~~-~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~Ga--D~IKTsTG 153 (203)
T cd00959 77 EAIA-DGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEAGA--DFIKTSTG 153 (203)
T ss_pred HHHH-cCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCC--CEEEcCCC
Confidence 8776 699999986653211 12345577777777776 4422 245555567888888888777664 444444
Q ss_pred cCc
Q 021569 226 YSL 228 (311)
Q Consensus 226 ~~~ 228 (311)
|.+
T Consensus 154 ~~~ 156 (203)
T cd00959 154 FGP 156 (203)
T ss_pred CCC
Confidence 543
No 225
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=33.31 E-value=1.7e+02 Score=25.83 Aligned_cols=84 Identities=18% Similarity=0.351 Sum_probs=49.9
Q ss_pred cHHHHHHHHHHHHhcCCCeeeee--eccCcCcCCc--cccchhHHHHHhCCeEEEcccCccccccCCCCCCCCCCCCCCC
Q 021569 201 SEKRLRNAYEKLKKRGIPLASNQ--VNYSLIYRKP--EENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGR 276 (311)
Q Consensus 201 ~~~~l~~~~~~~~~~g~~~~~~Q--~~~~~~~~~~--~~~~l~~~~~~~gi~v~a~spL~~G~Ltg~~~~~~~~~~~~~~ 276 (311)
++.+++.+ +++.|+.+..+- .+||-|...- +..++.++++.-|-.-+...||..|--.+.
T Consensus 50 p~a~vka~---Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd~s~~~~------------- 113 (272)
T COG4130 50 PAAEVKAL---AEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLNDGSWPGT------------- 113 (272)
T ss_pred CHHHHHHH---HHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccCCCCCCc-------------
Confidence 45666666 556676544331 2444444321 223689999999999999999987521110
Q ss_pred CCchHhHhhHHHHHHHHHHHHHhcCCC
Q 021569 277 IYTAEYLRNLQPLLNRIKELGENYSKT 303 (311)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~iA~~~g~s 303 (311)
.-. .+.+...+.+|+.|-++||++
T Consensus 114 ~vr---~~~lv~AlkaLkpil~~~gi~ 137 (272)
T COG4130 114 AVR---REDLVEALKALKPILDEYGIT 137 (272)
T ss_pred ccc---hHHHHHHHHHhhHHHHHhCcc
Confidence 111 123455566788888888764
No 226
>COG2062 SixA Phosphohistidine phosphatase SixA [Signal transduction mechanisms]
Probab=33.07 E-value=2.9e+02 Score=23.08 Aligned_cols=80 Identities=14% Similarity=-0.051 Sum_probs=48.4
Q ss_pred HHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHHHHHHhhCCCCcceEEecCCCC-CChHHHHHHHHHHHHc
Q 021569 111 TLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQ 189 (311)
Q Consensus 111 ~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~-~~~~~~~~~l~~l~~~ 189 (311)
+.+|+||++.... -|.|..+++. ..++..+...+.++.+... .+ ++-.+ .+...+++.++++.+
T Consensus 35 ~~~a~~L~~~~~~--~D~VL~Spa~----------Ra~QTae~v~~~~~~~~~~-~~-~~l~p~~d~~~~l~~l~~~~d- 99 (163)
T COG2062 35 ELVAAWLAGQGVE--PDLVLVSPAV----------RARQTAEIVAEHLGEKKVE-VF-EELLPNGDPGTVLDYLEALGD- 99 (163)
T ss_pred HHHHHHHHhcCCC--CCEEEeChhH----------HHHHHHHHHHHhhCcccce-ec-cccCCCCCHHHHHHHHHHhcc-
Confidence 5689999988753 2556666665 2455566666667632211 11 12112 345667777777766
Q ss_pred CccceEeecCCcHHHHH
Q 021569 190 GLVKAVGVSNYSEKRLR 206 (311)
Q Consensus 190 G~ir~iGvSn~~~~~l~ 206 (311)
-+..+.+..|+|.--+
T Consensus 100 -~v~~vllVgH~P~l~~ 115 (163)
T COG2062 100 -GVGSVLLVGHNPLLEE 115 (163)
T ss_pred -cCceEEEECCCccHHH
Confidence 5888999999875433
No 227
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=32.88 E-value=2.8e+02 Score=25.90 Aligned_cols=82 Identities=7% Similarity=0.010 Sum_probs=49.4
Q ss_pred ceEEecCCCCCChHHHHHHHHHHHHcCccc-eEeecCCcHHHHHHHHHHHHhcCCCeeeeeeccCcCcCCccccchhHHH
Q 021569 164 ELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAAC 242 (311)
Q Consensus 164 Dl~~lH~p~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~~~ 242 (311)
++.++-.|.. .++.|.+|.+.-.|. +.|=|-++.+.+.++.+. .-.+++|+-.+.+--- .++++.|
T Consensus 162 ~l~~iEqP~~-----~~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~-----~a~dvi~ik~~~~GGi---t~~lkiA 228 (327)
T PRK02901 162 PLEYVEQPCA-----TVEELAELRRRVGVPIAADESIRRAEDPLRVARA-----GAADVAVLKVAPLGGV---RAALDIA 228 (327)
T ss_pred CceEEecCCC-----CHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHc-----CCCCEEEeCcchhCCH---HHHHHHH
Confidence 4555555432 156666666654443 556666677766666432 2356666665543321 1478899
Q ss_pred HHhCCeEEEcccCccc
Q 021569 243 DELGITLIAYCPIAQG 258 (311)
Q Consensus 243 ~~~gi~v~a~spL~~G 258 (311)
+++||.++..|.+.++
T Consensus 229 ~~~gi~v~v~s~~es~ 244 (327)
T PRK02901 229 EQIGLPVVVSSALDTS 244 (327)
T ss_pred HHcCCcEEEeCCcccH
Confidence 9999999877666544
No 228
>COG3653 N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=32.87 E-value=4.9e+02 Score=25.65 Aligned_cols=138 Identities=20% Similarity=0.099 Sum_probs=78.9
Q ss_pred hHHHHHHHHHHHHHcCCCeEE--------cCCCCCCCcCCCCCchHHHHHHHHH--hccCCCCCccEEEEeeccCCCCCC
Q 021569 73 KMKAAKAAFDTSLDNGITFFD--------TAEVYGSRASFGAINSETLLGRFIK--ERKQRDPEVEVTVATKFAALPWRL 142 (311)
Q Consensus 73 ~~~~~~~~l~~Al~~Gi~~~D--------TA~~Yg~g~s~~~~~sE~~lG~al~--~~~~~~~R~~~~I~tK~~~~~~~~ 142 (311)
+.+...++++.|+|+|--=+- |.+.|.++.-. -..+++.+.++. +++ ..+.=+|.- ..
T Consensus 180 elaaMaallreAlEaGalGmS~~~~~~~~tgd~~p~~~l~--~~t~el~~la~~va~ag-----~~iLqst~d-----~~ 247 (579)
T COG3653 180 ELAAMAALLREALEAGALGMSMDAAIDKLTGDRYPSRALP--FATWELRRLAISVARAG-----GRILQSTHD-----RD 247 (579)
T ss_pred HHHHHHHHHHHHHhccccccchhhhcccccccccCCcccC--cchHHHHHHHHHHHHhc-----CceeEeecc-----cc
Confidence 345678899999999866555 77777664331 023666666653 333 333333332 23
Q ss_pred CHHHHHHHHHHHHHhh-CCCCcceEEecCCCCCChHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCC--e
Q 021569 143 GRQSVLAALKDSLFRL-GLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIP--L 219 (311)
Q Consensus 143 ~~~~i~~~~~~SL~rL-~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~--~ 219 (311)
....+.+.++++.+.- .-..+-+.+.|.-+. .-..+|++.+....++++.. .|.+ +
T Consensus 248 egaa~L~~l~~a~ri~~R~~~vr~v~s~~a~a-----------------g~~n~~~a~~~lgl~~kaq~----~G~pVg~ 306 (579)
T COG3653 248 EGAAALEALLEASRIGNRRKGVRMVMSHSADA-----------------GSMNWGVAVFGLGLIEKAQL----LGSPVGF 306 (579)
T ss_pred chHHHHHHHHHHHHhcCcccCceEEEeccccc-----------------cccchhhhhhccchHHHHHH----hCCccee
Confidence 4566777777777766 334677888886542 23456777777666666543 3433 3
Q ss_pred eeeeeccCcCcCCccccchhHHHHHhCC
Q 021569 220 ASNQVNYSLIYRKPEENGVKAACDELGI 247 (311)
Q Consensus 220 ~~~Q~~~~~~~~~~~~~~l~~~~~~~gi 247 (311)
.+.-...|++... -+++..++.|.
T Consensus 307 ~~~p~~a~~ys~~----~~~p~~~e~g~ 330 (579)
T COG3653 307 DHYPYTAELYSDG----IDLPVFEEFGA 330 (579)
T ss_pred eecccccchhccC----Ccchhhhhccc
Confidence 3333333444433 25666666665
No 229
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=32.84 E-value=2e+02 Score=25.45 Aligned_cols=147 Identities=18% Similarity=0.147 Sum_probs=89.4
Q ss_pred eecCCCCccccccee--cccccCCCCCCCCCcCchhhHHHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHH
Q 021569 39 VKLGGSDLKVTKLGV--GAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRF 116 (311)
Q Consensus 39 ~~lg~sg~~vs~lgl--Gt~~~g~~~~~~~~~~~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~a 116 (311)
++||. |+.++.|.+ |-..-|- .--+.+++.=+++.|++.- .|-. |..+-++
T Consensus 19 krLGG-GiP~GsL~lIEGd~~tGK-------------SvLsqr~~YG~L~~g~~v~----yvsT---------e~T~ref 71 (235)
T COG2874 19 KRLGG-GIPVGSLILIEGDNGTGK-------------SVLSQRFAYGFLMNGYRVT----YVST---------ELTVREF 71 (235)
T ss_pred hhccC-CCccCeEEEEECCCCccH-------------HHHHHHHHHHHHhCCceEE----EEEe---------chhHHHH
Confidence 56776 787777653 4332221 1456778888899998754 1222 7777777
Q ss_pred HHhccCC-CCCccEEEEeeccCC-----CCCCCHHHHHHHHHHHHHhhCCCCcceEEecCCCC---CC----hHHHHHHH
Q 021569 117 IKERKQR-DPEVEVTVATKFAAL-----PWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI---WG----NEGFIDGL 183 (311)
Q Consensus 117 l~~~~~~-~~R~~~~I~tK~~~~-----~~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~---~~----~~~~~~~l 183 (311)
|+....- .+=.+.+|.-++... +..++++.-+.-++..++..+.-.-|++.+...+. .+ ..+.+..+
T Consensus 72 i~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~ 151 (235)
T COG2874 72 IKQMESLSYDVSDFLLSGRLLFFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFL 151 (235)
T ss_pred HHHHHhcCCCchHHHhcceeEEEEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcccHHHHHHHHHHH
Confidence 7654211 111344444443221 23456777777788888888887889999988765 22 34566677
Q ss_pred HHHHHcCccceEeecC--CcHHHHHHHHHHH
Q 021569 184 GDAVEQGLVKAVGVSN--YSEKRLRNAYEKL 212 (311)
Q Consensus 184 ~~l~~~G~ir~iGvSn--~~~~~l~~~~~~~ 212 (311)
.+|.++||+--+-+.. ++.+.+-++.+.|
T Consensus 152 r~l~d~gKvIilTvhp~~l~e~~~~rirs~~ 182 (235)
T COG2874 152 RKLSDLGKVIILTVHPSALDEDVLTRIRSAC 182 (235)
T ss_pred HHHHhCCCEEEEEeChhhcCHHHHHHHHHhh
Confidence 7888899988776653 3445555554443
No 230
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=32.76 E-value=1e+02 Score=28.14 Aligned_cols=58 Identities=7% Similarity=0.007 Sum_probs=36.0
Q ss_pred CCcHHHHHHHHHHHHhcCCCeeeeeeccCcC---------c--CCccccchhHHHHHhCCeEEEcccCc
Q 021569 199 NYSEKRLRNAYEKLKKRGIPLASNQVNYSLI---------Y--RKPEENGVKAACDELGITLIAYCPIA 256 (311)
Q Consensus 199 n~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~---------~--~~~~~~~l~~~~~~~gi~v~a~spL~ 256 (311)
+.+.+..++.++.+.++|++-..+--.+.-. . ....-.+|+++++++||+|+.|.--.
T Consensus 28 g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~ 96 (273)
T PF10566_consen 28 GATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSE 96 (273)
T ss_dssp SSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECC
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCC
Confidence 4467888888888888888766654444310 0 11122369999999999888775544
No 231
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=32.73 E-value=51 Score=30.05 Aligned_cols=40 Identities=20% Similarity=0.209 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHH
Q 021569 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLL 113 (311)
Q Consensus 73 ~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~l 113 (311)
+...+..-.-.|+++|++.||++ .+|.|...|+...|.++
T Consensus 201 d~Gla~AN~laA~~aGa~~vd~s-~~GlGe~aGN~~~E~~v 240 (280)
T cd07945 201 DYDLAVANVLAAVKAGIKGLHTT-VNGLGERAGNAPLASVI 240 (280)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEe-cccccccccCccHHHHH
No 232
>PRK05660 HemN family oxidoreductase; Provisional
Probab=32.65 E-value=2.3e+02 Score=26.91 Aligned_cols=88 Identities=16% Similarity=0.093 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHH
Q 021569 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (311)
Q Consensus 73 ~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~ 152 (311)
+.+++.+.++.+.+.|+..+..-=+||- ...+.+.+.+.++
T Consensus 141 ~~~~~~~ai~~~~~~G~~~v~~dli~Gl---------------------------------------pgqt~~~~~~~l~ 181 (378)
T PRK05660 141 GPDEAKRAAKLAQGLGLRSFNLDLMHGL---------------------------------------PDQSLEEALDDLR 181 (378)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEeecCC---------------------------------------CCCCHHHHHHHHH
Q ss_pred HHHHhhCCCCcceEEec-------------CCCCCChHHHHHHHHHHHHcCccceEeecCC
Q 021569 153 DSLFRLGLSSVELYQLH-------------WAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY 200 (311)
Q Consensus 153 ~SL~rL~~d~iDl~~lH-------------~p~~~~~~~~~~~l~~l~~~G~ir~iGvSn~ 200 (311)
..++ |+.|+|.+|.+- .|+.....+.++...+..++---..+++|||
T Consensus 182 ~~~~-l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yei~~f 241 (378)
T PRK05660 182 QAIA-LNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGYQQYETSAY 241 (378)
T ss_pred HHHh-cCCCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCCcEeecccc
No 233
>PRK15108 biotin synthase; Provisional
Probab=32.50 E-value=4.3e+02 Score=24.81 Aligned_cols=65 Identities=12% Similarity=0.104 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHHHHhhCCCCcceEEecCCCC--CChHHHHHHHHHHHHcCccceEeecC--CcHHHHHHHHH
Q 021569 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSN--YSEKRLRNAYE 210 (311)
Q Consensus 142 ~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~--~~~~~~~~~l~~l~~~G~ir~iGvSn--~~~~~l~~~~~ 210 (311)
.+++.|.+.+.. ...+|+..+ .....+.++ .+.+.+.+.+..+++.|. .+.+|+ .+.++++++.+
T Consensus 76 ls~eEI~~~a~~-~~~~G~~~i-~i~~~g~~p~~~~~e~i~~~i~~ik~~~i--~v~~s~G~ls~e~l~~Lke 144 (345)
T PRK15108 76 MEVEQVLESARK-AKAAGSTRF-CMGAAWKNPHERDMPYLEQMVQGVKAMGL--ETCMTLGTLSESQAQRLAN 144 (345)
T ss_pred CCHHHHHHHHHH-HHHcCCCEE-EEEecCCCCCcchHHHHHHHHHHHHhCCC--EEEEeCCcCCHHHHHHHHH
Confidence 466777776654 456788876 333333222 345666677777776664 244555 56666666543
No 234
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=32.20 E-value=3.4e+02 Score=23.52 Aligned_cols=74 Identities=24% Similarity=0.239 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHhh---CCCCcceEEecCCCCCChHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCee
Q 021569 144 RQSVLAALKDSLFRL---GLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (311)
Q Consensus 144 ~~~i~~~~~~SL~rL---~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~ 220 (311)
...+.+.+++.++++ |. .++++++... .+.+...+.++.+..+ ++..|=++..+...+...+..+...++|+.
T Consensus 14 ~~~~~~~i~~~~~~~~~~g~-~~~l~i~~~~--~~~~~~~~~~~~~~~~-~vdgiIi~~~~~~~~~~~l~~~~~~~iPvv 89 (272)
T cd06300 14 RAQMLDEFKAQAKELKKAGL-ISEFIVTSAD--GDVAQQIADIRNLIAQ-GVDAIIINPASPTALNPVIEEACEAGIPVV 89 (272)
T ss_pred HHHHHHHHHHHHHhhhccCC-eeEEEEecCC--CCHHHHHHHHHHHHHc-CCCEEEEeCCChhhhHHHHHHHHHCCCeEE
Confidence 445667777777776 52 1455554322 2344455666666666 566555555443333333344444555544
Q ss_pred e
Q 021569 221 S 221 (311)
Q Consensus 221 ~ 221 (311)
+
T Consensus 90 ~ 90 (272)
T cd06300 90 S 90 (272)
T ss_pred E
Confidence 3
No 235
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=32.17 E-value=4.6e+02 Score=25.06 Aligned_cols=88 Identities=19% Similarity=0.173 Sum_probs=55.9
Q ss_pred ecCCCC------C------ChHHHHHHHHHHHH-cC------ccceEeec--CCcHHHHHHHHHHHHhcCCCeeeeeecc
Q 021569 168 LHWAGI------W------GNEGFIDGLGDAVE-QG------LVKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (311)
Q Consensus 168 lH~p~~------~------~~~~~~~~l~~l~~-~G------~ir~iGvS--n~~~~~l~~~~~~~~~~g~~~~~~Q~~~ 226 (311)
||.+++ . +.++.++++.+..+ .| .||++=+. |.+.+.++++.+.++. .+..++=++|
T Consensus 222 Lha~d~e~R~~lmPin~~~~l~~ll~a~~~y~~~~~~~~rrI~irypLIpGvNDs~e~a~~La~ll~~--l~~~VnLIPY 299 (372)
T PRK11194 222 LHAPNDELRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTVEYVMLDHVNDGTEHAHQLAELLKD--TPCKINLIPW 299 (372)
T ss_pred ccCCCHHHHHHhcCCcccccHHHHHHHHHHHHHhcccCCCeEEEEEEeECCCCCCHHHHHHHHHHHhc--CCceEEEecC
Confidence 898774 1 34566666555443 32 25665555 5578888888887654 3467888999
Q ss_pred CcCcCC----cccc---chhHHHHHhCCeEEEcccCcc
Q 021569 227 SLIYRK----PEEN---GVKAACDELGITLIAYCPIAQ 257 (311)
Q Consensus 227 ~~~~~~----~~~~---~l~~~~~~~gi~v~a~spL~~ 257 (311)
|++... +..+ .+.++.+++||.+......+.
T Consensus 300 N~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~~G~ 337 (372)
T PRK11194 300 NPFPGAPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGD 337 (372)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEecCCCC
Confidence 986532 1111 256677888999987655553
No 236
>PF12816 Vps8: Golgi CORVET complex core vacuolar protein 8
Probab=32.07 E-value=34 Score=29.46 Aligned_cols=64 Identities=17% Similarity=0.251 Sum_probs=37.9
Q ss_pred HHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeeeeeccCcCcCCccccchhHHHHHhCC
Q 021569 179 FIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGI 247 (311)
Q Consensus 179 ~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi 247 (311)
.++.|+..+-+|+|+.+ ++..++.+++.....+..-.+-|+-+++=.....-+-++..|+++++
T Consensus 4 Fle~Lep~Il~~~i~~l-----pp~v~k~lv~~y~~~~~~~~lE~lI~~LD~~~LDidq~i~lC~~~~L 67 (196)
T PF12816_consen 4 FLECLEPFILSGKIKSL-----PPEVFKALVEHYASKGRLERLEQLILHLDPSSLDIDQVIKLCKKHGL 67 (196)
T ss_pred HHHHHHHHHHcCCCCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHhcCHHHHHHHHHHCCC
Confidence 46788888899988865 56667777776554442222223333332222222248899999974
No 237
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=32.06 E-value=3.8e+02 Score=24.17 Aligned_cols=126 Identities=10% Similarity=0.078 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHcCCCeEEcC---CCCCCC-cCCCCCchHHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHH
Q 021569 74 MKAAKAAFDTSLDNGITFFDTA---EVYGSR-ASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (311)
Q Consensus 74 ~~~~~~~l~~Al~~Gi~~~DTA---~~Yg~g-~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~ 149 (311)
.++..+..+.+.+.|+..||.- +.+..+ ..- ..+.+.+-+.++..... -++-|..|+.+. . +.+.
T Consensus 101 ~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~--~~~~~~~~eiv~~vr~~---~~~Pv~vKl~~~---~--~~~~- 169 (296)
T cd04740 101 VEEFVEVAEKLADAGADAIELNISCPNVKGGGMAF--GTDPEAVAEIVKAVKKA---TDVPVIVKLTPN---V--TDIV- 169 (296)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccc--cCCHHHHHHHHHHHHhc---cCCCEEEEeCCC---c--hhHH-
Confidence 4677778888888999999862 222110 000 01256666666655321 267788898531 1 2222
Q ss_pred HHHHHHHhhCCCCcceEE------ecCCCCC--------------ChHHHHHHHHHHHHcCccceEeecCC-cHHHHHHH
Q 021569 150 ALKDSLFRLGLSSVELYQ------LHWAGIW--------------GNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNA 208 (311)
Q Consensus 150 ~~~~SL~rL~~d~iDl~~------lH~p~~~--------------~~~~~~~~l~~l~~~G~ir~iGvSn~-~~~~l~~~ 208 (311)
.+-+.+...|.|.|+++- +|..... ...-.++.+.++++.=.|.-||+... +++.+.++
T Consensus 170 ~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~da~~~ 249 (296)
T cd04740 170 EIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGEDALEF 249 (296)
T ss_pred HHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHH
Confidence 233456678888776631 1210000 01124667777777656888998886 77888887
Q ss_pred HH
Q 021569 209 YE 210 (311)
Q Consensus 209 ~~ 210 (311)
+.
T Consensus 250 l~ 251 (296)
T cd04740 250 LM 251 (296)
T ss_pred HH
Confidence 64
No 238
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=31.93 E-value=1.5e+02 Score=25.73 Aligned_cols=87 Identities=16% Similarity=0.215 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccceEeecCC-cHHHHHHHHHHHHhcCCCeee
Q 021569 143 GRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLAS 221 (311)
Q Consensus 143 ~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir~iGvSn~-~~~~l~~~~~~~~~~g~~~~~ 221 (311)
+++...+.++. |-+-|+..|.+ -+- ..+..+.+++++++..=-.||+-+. +.++++++.+. |..|.+
T Consensus 14 ~~~~a~~ia~a-l~~gGi~~iEi---t~~----tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~a----GA~Fiv 81 (201)
T PRK06015 14 DVEHAVPLARA-LAAGGLPAIEI---TLR----TPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKA----GSRFIV 81 (201)
T ss_pred CHHHHHHHHHH-HHHCCCCEEEE---eCC----CccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHc----CCCEEE
Confidence 45555444443 33455544443 221 2235666677766543355888765 78888887543 445544
Q ss_pred eeeccCcCcCCccccchhHHHHHhCCeEE
Q 021569 222 NQVNYSLIYRKPEENGVKAACDELGITLI 250 (311)
Q Consensus 222 ~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~ 250 (311)
+|.. ..+++++|+++||.++
T Consensus 82 -----SP~~----~~~vi~~a~~~~i~~i 101 (201)
T PRK06015 82 -----SPGT----TQELLAAANDSDVPLL 101 (201)
T ss_pred -----CCCC----CHHHHHHHHHcCCCEe
Confidence 3322 2269999999999887
No 239
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=31.87 E-value=1.4e+02 Score=29.39 Aligned_cols=63 Identities=17% Similarity=0.124 Sum_probs=40.5
Q ss_pred HhhCCCCcceEEec-CCCCCChHHHHHHHHHHHHcCccceEeec-CCcHHHHHHHHHHHHhcCCCeeeeeeccC
Q 021569 156 FRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGLVKAVGVS-NYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (311)
Q Consensus 156 ~rL~~d~iDl~~lH-~p~~~~~~~~~~~l~~l~~~G~ir~iGvS-n~~~~~l~~~~~~~~~~g~~~~~~Q~~~~ 227 (311)
..+|.|++=+.+.. .|...+.+..-+....+ . ++.+||- |-+++.+.++.+. ..++++|++-+
T Consensus 274 ~~~GaD~lGfIf~~~SpR~V~~~~a~~i~~~l-~---v~~VgVfv~~~~~~i~~i~~~-----~~lD~vQLHG~ 338 (454)
T PRK09427 274 YDAGAVYGGLIFVEKSPRYVSLEQAQEIIAAA-P---LRYVGVFRNADIEDIVDIAKQ-----LSLAAVQLHGD 338 (454)
T ss_pred HhCCCCEEeeEeCCCCCCCCCHHHHHHHHHhC-C---CCEEEEEeCCCHHHHHHHHHH-----cCCCEEEeCCC
Confidence 45788998886432 34334444332222222 2 8899987 7788888887654 46899999864
No 240
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=31.83 E-value=6.4e+02 Score=28.33 Aligned_cols=124 Identities=7% Similarity=0.001 Sum_probs=70.5
Q ss_pred hhCCCCcceEEecCCCC--CChHHHHHHHHHHHHcC-cc--ceEeecCCcHHHHHHHHHHHHhcCCCeeeeeeccCcCcC
Q 021569 157 RLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQG-LV--KAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYR 231 (311)
Q Consensus 157 rL~~d~iDl~~lH~p~~--~~~~~~~~~l~~l~~~G-~i--r~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~ 231 (311)
.-|-+.||+- ++. .+.++.+..+..+++.- .+ --|-|-+++++.++.+++.+. .++.+|-+..--.+.
T Consensus 395 e~GA~iIDVn----~g~~~id~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~ViEaaLk~~~---G~~IINSIs~~~~~~ 467 (1229)
T PRK09490 395 ENGAQIIDIN----MDEGMLDSEAAMVRFLNLIASEPDIARVPIMIDSSKWEVIEAGLKCIQ---GKGIVNSISLKEGEE 467 (1229)
T ss_pred HCCCCEEEEC----CCCCCCCHHHHHHHHHHHHHhhhccCCceEEEeCCcHHHHHHHHhhcC---CCCEEEeCCCCCCCc
Confidence 3488999984 333 33444454444444321 11 236667888999999876532 345666554321111
Q ss_pred CccccchhHHHHHhCCeEEEcccCccccccCCCCCCCCCCCCCCCCCchHhHhhHHHHHHHHHHHHH-hcCCCcchhcc
Q 021569 232 KPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGE-NYSKTSTQFSV 309 (311)
Q Consensus 232 ~~~~~~l~~~~~~~gi~v~a~spL~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iA~-~~g~s~~qvaL 309 (311)
. ..++++.|+++|..+++..--..|. +...++-.+..+++-+++. ++|+++..+.+
T Consensus 468 ~--~~~~~~l~~kyga~vV~m~~de~G~--------------------~~t~e~r~~ia~r~~~~~~~~~Gi~~~dIi~ 524 (1229)
T PRK09490 468 K--FIEHARLVRRYGAAVVVMAFDEQGQ--------------------ADTRERKIEICKRAYDILTEEVGFPPEDIIF 524 (1229)
T ss_pred c--HHHHHHHHHHhCCCEEEEecCCCCC--------------------CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEE
Confidence 1 1148999999999999864322231 1112333455556666665 59998877643
No 241
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=31.67 E-value=3.6e+02 Score=23.73 Aligned_cols=127 Identities=16% Similarity=0.180 Sum_probs=65.6
Q ss_pred HHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccceEeecCC-cHHHHHHHHHHHHhcCCCeeeeeeccCc
Q 021569 150 ALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLASNQVNYSL 228 (311)
Q Consensus 150 ~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir~iGvSn~-~~~~l~~~~~~~~~~g~~~~~~Q~~~~~ 228 (311)
-++..-+.||+.-+. +-.+ ...++-.+.|.++.++=.|..+-+-.- +..|-...-..|...|+. .+.|
T Consensus 49 ~~~~qA~algipl~~---~~~~--~~~e~~~e~l~~~l~~~gv~~vv~GdI~s~~qr~~~e~v~~~lgl~------~~~P 117 (223)
T TIGR00290 49 LTDLQAESIGIPLIK---LYTE--GTEEDEVEELKGILHTLDVEAVVFGAIYSEYQKTRIERVCRELGLK------SFAP 117 (223)
T ss_pred HHHHHHHHcCCCeEE---eecC--CCccHHHHHHHHHHHHcCCCEEEECCcccHHHHHHHHHHHHhcCCE------Eecc
Confidence 344445667765322 1111 123344445544333323555544332 344444444456666653 2346
Q ss_pred CcCCccccchhHHHHHhCCeEEEcccCccccccCCCCCCCCCCCCCCCCCchHhHhhHHHHHHHHHHHHHhcCCCcc
Q 021569 229 IYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTST 305 (311)
Q Consensus 229 ~~~~~~~~~l~~~~~~~gi~v~a~spL~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~~ 305 (311)
+++.... ++++-+-+.|+.++.-+.-+.|+ ...+ .++.++. +.++.|.++.++||++|.
T Consensus 118 LW~~~~~-~ll~e~i~~G~~aiIv~v~a~gL-~~~~---------LGr~i~~-------e~i~~L~~~~~~~gvd~~ 176 (223)
T TIGR00290 118 LWHRDPE-KLMEEFVEEKFEARIIAVAAEGL-DESW---------LGRRIDR-------KMIDELKKLNEKYGIHPA 176 (223)
T ss_pred ccCCCHH-HHHHHHHHcCCeEEEEEEecCCC-ChHH---------cCCcccH-------HHHHHHHHHHhccCCCcc
Confidence 6665443 58888889998887665555553 1111 0122222 345577788888988764
No 242
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=31.26 E-value=2.9e+02 Score=24.88 Aligned_cols=96 Identities=17% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCc-cceEeecCCcHHHHHHHHHHHHhcCCCeeeeeecc
Q 021569 148 LAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGL-VKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (311)
Q Consensus 148 ~~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~-ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~~ 226 (311)
+..+-+.|.++|+++|.+-. +...++.++..+.+.+.++ .+-.+....+.+.++.+.+. |++...+=+..
T Consensus 24 k~~i~~~L~~~Gv~~IEvG~-----P~~~~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~----g~~~i~i~~~~ 94 (262)
T cd07948 24 KIEIAKALDAFGVDYIELTS-----PAASPQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVET----GVDGVDLVFGT 94 (262)
T ss_pred HHHHHHHHHHcCCCEEEEEC-----CCCCHHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHc----CcCEEEEEEec
Q ss_pred CcCcCCcccc-----------chhHHHHHhCCeEEEc
Q 021569 227 SLIYRKPEEN-----------GVKAACDELGITLIAY 252 (311)
Q Consensus 227 ~~~~~~~~~~-----------~l~~~~~~~gi~v~a~ 252 (311)
|......... +++++++++|+.+...
T Consensus 95 S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~ 131 (262)
T cd07948 95 SPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFS 131 (262)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE
No 243
>PRK10508 hypothetical protein; Provisional
Probab=31.15 E-value=69 Score=29.99 Aligned_cols=42 Identities=10% Similarity=0.087 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHH
Q 021569 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAV 187 (311)
Q Consensus 142 ~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~ 187 (311)
-+++.+.+.|++..+++|+|.+ + ++.+. .+.++.++.++-|.
T Consensus 286 Gtpe~V~~kl~~l~~~~g~del-~--~~~~~-~~~e~~~~S~~lla 327 (333)
T PRK10508 286 GDKAKVRHGLQSILRETQADEI-M--VNGQI-FDHQARLHSFELAM 327 (333)
T ss_pred eCHHHHHHHHHHHHHHHCcCEE-E--EECCC-CCHHHHHHHHHHHH
Confidence 3688899999999999998877 2 33322 35555555555443
No 244
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=31.13 E-value=1.1e+02 Score=29.13 Aligned_cols=94 Identities=13% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeeeeeccCcCcCCccccchhHHHHHhCCeEEEcccCcccc
Q 021569 180 IDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGA 259 (311)
Q Consensus 180 ~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spL~~G~ 259 (311)
.+++.+|.+.|.+.+|-.---..-.+..+... +-.--..-|.+...+.-+. +++.|+++||.|+.-+-=..+
T Consensus 12 ~~a~~~l~~~g~~d~l~~d~LaE~tma~~~~~------~~~~p~~gY~~~~~~~L~~-~L~~~~~~gIkvI~NaGg~np- 83 (362)
T PF07287_consen 12 PDAAVRLARGGDVDYLVGDYLAERTMAILARA------KRKDPTKGYAPDFVRDLRP-LLPAAAEKGIKVITNAGGLNP- 83 (362)
T ss_pred HHHHHHHHhcCCCCEEEEecHHHHHHHHHHHH------HhhCCCCCchHHHHHHHHH-HHHHHHhCCCCEEEeCCCCCH-
Q ss_pred ccCCCCCCCCCCCCCCCCCchHhHhhHHHHHHHHHHHHHhcCCCcchhcc
Q 021569 260 LTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQFSV 309 (311)
Q Consensus 260 Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~~qvaL 309 (311)
....+.++++|+++|.+ ..||.
T Consensus 84 ---------------------------~~~a~~v~eia~e~Gl~-lkvA~ 105 (362)
T PF07287_consen 84 ---------------------------AGCADIVREIARELGLS-LKVAV 105 (362)
T ss_pred ---------------------------HHHHHHHHHHHHhcCCC-eeEEE
No 245
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=30.95 E-value=2.4e+02 Score=22.57 Aligned_cols=60 Identities=15% Similarity=0.113 Sum_probs=41.7
Q ss_pred CccEEEEeeccCCCCCCCHHHHHHHHHHHHHhhCC----CCcceEEecCCCC--CChHHHHHHHHHHHH
Q 021569 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL----SSVELYQLHWAGI--WGNEGFIDGLGDAVE 188 (311)
Q Consensus 126 R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~rL~~----d~iDl~~lH~p~~--~~~~~~~~~l~~l~~ 188 (311)
|=-+.|+-|+|. ...+..|++-+.++.+.+.. ...|++++-.+.. .+..++-+.|+.+.+
T Consensus 48 RvG~~VSKKvG~---AV~RNRiKR~lRE~fR~~~~~~~~~g~DiVivar~~~~~~~~~~l~~~L~~~l~ 113 (129)
T PRK01313 48 RVGFTVTKKNGN---AVERNRIRRRLKEAVRLHAGFDMAPGTDYVIVARRDALNAPFSQLTEELSRRIE 113 (129)
T ss_pred EEEEEEecccCc---chHHHHHHHHHHHHHHHhchhccCCCceEEEEECcccccCCHHHHHHHHHHHHH
Confidence 456788888763 45678888888888887643 5689999998864 345555555554443
No 246
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=30.93 E-value=4e+02 Score=25.25 Aligned_cols=13 Identities=8% Similarity=0.304 Sum_probs=6.1
Q ss_pred hhHHHHHhCCeEE
Q 021569 238 VKAACDELGITLI 250 (311)
Q Consensus 238 l~~~~~~~gi~v~ 250 (311)
+.++|+++|+.++
T Consensus 158 I~~la~~~g~~vv 170 (382)
T TIGR02080 158 ICHLAKAVGAVVV 170 (382)
T ss_pred HHHHHHHcCCEEE
Confidence 4444444444444
No 247
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=30.91 E-value=3.8e+02 Score=23.75 Aligned_cols=86 Identities=17% Similarity=0.081 Sum_probs=43.3
Q ss_pred HHhhCCCCcceEEecCCCC--CChHHHHHHHHHHHHcCccceEeecCC-cHHHHHHHHHHHHhcCCCeeee-eeccCcCc
Q 021569 155 LFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLASN-QVNYSLIY 230 (311)
Q Consensus 155 L~rL~~d~iDl~~lH~p~~--~~~~~~~~~l~~l~~~G~ir~iGvSn~-~~~~l~~~~~~~~~~g~~~~~~-Q~~~~~~~ 230 (311)
|+.+| +|.+.+|..+. ....--++.+.++++.-.+.-|..... +++.+.++... .++.-+++ -.-| .
T Consensus 164 l~~~G---~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~---g~~dgv~~g~a~~---~ 234 (254)
T TIGR00735 164 VEKLG---AGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTK---GKADAALAASVFH---Y 234 (254)
T ss_pred HHHcC---CCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHc---CCcceeeEhHHHh---C
Confidence 34555 56666665443 111112455555665555555555543 56777777543 22322111 1111 1
Q ss_pred CCccccchhHHHHHhCCeE
Q 021569 231 RKPEENGVKAACDELGITL 249 (311)
Q Consensus 231 ~~~~~~~l~~~~~~~gi~v 249 (311)
......++.++|+++||.+
T Consensus 235 ~~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 235 REITIGEVKEYLAERGIPV 253 (254)
T ss_pred CCCCHHHHHHHHHHCCCcc
Confidence 1112225899999999864
No 248
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=30.87 E-value=2.5e+02 Score=25.33 Aligned_cols=141 Identities=11% Similarity=0.033 Sum_probs=78.3
Q ss_pred hhHHHHHHHHHHHHH--cCCCeEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHH
Q 021569 72 RKMKAAKAAFDTSLD--NGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (311)
Q Consensus 72 ~~~~~~~~~l~~Al~--~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~ 149 (311)
.++++..++++.|.+ .|+.-+-..+.| -....+.|+... -.++-|+|=++.+....+.+.-..
T Consensus 23 ~T~~~I~~lc~eA~~~~~~faaVcV~P~~-----------v~~a~~~L~~~~----~~~vkv~tVigFP~G~~~t~~K~~ 87 (257)
T PRK05283 23 DTDEKVIALCHQAKTPVGNTAAICIYPRF-----------IPIARKTLREQG----TPEIRIATVTNFPHGNDDIDIALA 87 (257)
T ss_pred CCHHHHHHHHHHHHhcCCCeeEEEECHHH-----------HHHHHHHhcccC----CCCCeEEEEecCCCCCCcHHHHHH
Confidence 456889999999999 476666555544 345555565321 015788888875433344455556
Q ss_pred HHHHHHHhhCCCCcceEEecC-CCCCChHHHHHHHHHHHHc---Cc-cceEeec-CCcHHH-HHHHHHHHHhcCCCeeee
Q 021569 150 ALKDSLFRLGLSSVELYQLHW-AGIWGNEGFIDGLGDAVEQ---GL-VKAVGVS-NYSEKR-LRNAYEKLKKRGIPLASN 222 (311)
Q Consensus 150 ~~~~SL~rL~~d~iDl~~lH~-p~~~~~~~~~~~l~~l~~~---G~-ir~iGvS-n~~~~~-l~~~~~~~~~~g~~~~~~ 222 (311)
..+..++ .|.|-||+++==. .-.-..+.+.+.+.++++. |+ ++-|==+ -.+.++ +.++.+.+...|..|.--
T Consensus 88 Ea~~Ai~-~GAdEiD~Vinig~lk~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee~i~~a~~~a~~aGADFVKT 166 (257)
T PRK05283 88 ETRAAIA-YGADEVDVVFPYRALMAGNEQVGFELVKACKEACAANVLLKVIIETGELKDEALIRKASEIAIKAGADFIKT 166 (257)
T ss_pred HHHHHHH-cCCCEEeeeccHHHHhCCcHHHHHHHHHHHHHHhCCCceEEEEEeccccCCHHHHHHHHHHHHHhCCCEEEc
Confidence 6666666 4999999865311 1112234444455555542 33 3433222 235553 666766666666554443
Q ss_pred eeccCc
Q 021569 223 QVNYSL 228 (311)
Q Consensus 223 Q~~~~~ 228 (311)
-.-|.+
T Consensus 167 STGf~~ 172 (257)
T PRK05283 167 STGKVP 172 (257)
T ss_pred CCCCCC
Confidence 344443
No 249
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=30.81 E-value=2.7e+02 Score=24.50 Aligned_cols=57 Identities=5% Similarity=-0.043 Sum_probs=30.8
Q ss_pred chhHHHHHhCCeEEEcc-cCccccccCCCCCCCCCCCCCCCCCchHhHhhHHHHHHHHHHHHHhcCCCc
Q 021569 237 GVKAACDELGITLIAYC-PIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTS 304 (311)
Q Consensus 237 ~l~~~~~~~gi~v~a~s-pL~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~ 304 (311)
++.+.++++||.+...+ |++ ++..+... ..+.+...+...+.+++..++|+++|++.
T Consensus 44 ~~~~~l~~~gl~~~~~~~~~~-~~~~~~~~----------~~~~~~~~~~~~~~~~~~i~~a~~lga~~ 101 (258)
T PRK09997 44 ELKQVLASNKLEHTLHNLPAG-DWAAGERG----------IACIPGREEEFRDGVAAAIRYARALGNKK 101 (258)
T ss_pred HHHHHHHHcCCcEEEEcCCCC-ccccCcCc----------cccCCCcHHHHHHHHHHHHHHHHHhCCCE
Confidence 58999999999997654 332 22111100 00111111223344567778888888763
No 250
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=30.71 E-value=3.7e+02 Score=23.61 Aligned_cols=125 Identities=17% Similarity=0.189 Sum_probs=63.7
Q ss_pred HHHHHHHhhCCCCcceEEecCCCCCChHHHHHHH-HHHHHcCccceEeecCC-cHHHHHHHHHHHHhcCCCeeeeeeccC
Q 021569 150 ALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGL-GDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLASNQVNYS 227 (311)
Q Consensus 150 ~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l-~~l~~~G~ir~iGvSn~-~~~~l~~~~~~~~~~g~~~~~~Q~~~~ 227 (311)
.++..-+.||+.. +.+..+. ..++-++.| +.|++.| |..|-+-.- +..|-...-..|+..|+.+ +.
T Consensus 49 ~~~~qA~algiPl---~~~~~~~--~~e~~~~~l~~~l~~~g-v~~vv~GdI~s~~qr~~~e~vc~~~gl~~------~~ 116 (222)
T TIGR00289 49 LTDLVAEAVGIPL---IKLYTSG--EEEKEVEDLAGQLGELD-VEALCIGAIESNYQKSRIDKVCRELGLKS------IA 116 (222)
T ss_pred HHHHHHHHcCCCe---EEEEcCC--chhHHHHHHHHHHHHcC-CCEEEECccccHHHHHHHHHHHHHcCCEE------ec
Confidence 3444556677653 2222221 123333444 4445544 665544332 3444445555576666532 34
Q ss_pred cCcCCccccchhHHHHHhCCeEEEcccCccccccCCCCCCCCCCCCCCCCCchHhHhhHHHHHHHHHHHHHhcCCCcc
Q 021569 228 LIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTST 305 (311)
Q Consensus 228 ~~~~~~~~~~l~~~~~~~gi~v~a~spL~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~~ 305 (311)
|+++...+ +++++. +.|+.++.-+.-+.|+ ...+ .++.++. +.++.|.++.++||++|.
T Consensus 117 PLW~~d~~-~l~e~i-~~Gf~aiIv~v~~~gL-~~~~---------LGr~id~-------~~~~~L~~l~~~~gid~~ 175 (222)
T TIGR00289 117 PLWHADPE-KLMYEV-AEKFEVIIVSVSAMGL-DESW---------LGRRIDK-------ECIDDLKRLNEKYGIHLA 175 (222)
T ss_pred cccCCCHH-HHHHHH-HcCCeEEEEEEccCCC-ChHH---------cCCccCH-------HHHHHHHHHHhhcCcccc
Confidence 66665443 477654 7887776655545442 1111 0122222 345578888899998874
No 251
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=30.65 E-value=2.7e+02 Score=25.72 Aligned_cols=75 Identities=16% Similarity=0.213 Sum_probs=40.7
Q ss_pred HHHHHHHHHcCcc--ceEeecCCcHHHHH-------------HHHHHHHhcCCCeeeeeeccCcCcCCccc--c---chh
Q 021569 180 IDGLGDAVEQGLV--KAVGVSNYSEKRLR-------------NAYEKLKKRGIPLASNQVNYSLIYRKPEE--N---GVK 239 (311)
Q Consensus 180 ~~~l~~l~~~G~i--r~iGvSn~~~~~l~-------------~~~~~~~~~g~~~~~~Q~~~~~~~~~~~~--~---~l~ 239 (311)
-+.|+.|++.|.- -+||+=+++.+.++ ++.+.++..|+.+.+ .+-+.+-.....+ + ..+
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg~t~~~~~~ai~~~~~~Gi~v~~-~~i~G~P~~se~ea~ed~~~ti 195 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETANDRIREKSINKGSTFEDFIRAAELARKYGAGVKA-YLLFKPPFLSEKEAIADMISSI 195 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCCCCHHHHHHHHHHHHHcCCcEEE-EEEecCCCCChhhhHHHHHHHH
Confidence 3456667778873 57888777766653 556666667765332 3333322111110 0 246
Q ss_pred HHHHHhCCeEEEcccCc
Q 021569 240 AACDELGITLIAYCPIA 256 (311)
Q Consensus 240 ~~~~~~gi~v~a~spL~ 256 (311)
+++.+.+ ..+...||.
T Consensus 196 ~~~~~l~-~~vs~~~l~ 211 (313)
T TIGR01210 196 RKCIPVT-DTVSINPTN 211 (313)
T ss_pred HHHHhcC-CcEEEECCE
Confidence 6676666 555555554
No 252
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=30.60 E-value=4.3e+02 Score=24.25 Aligned_cols=167 Identities=12% Similarity=0.129 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHH-cCCCeEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHH
Q 021569 74 MKAAKAAFDTSLD-NGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (311)
Q Consensus 74 ~~~~~~~l~~Al~-~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~ 152 (311)
.++..+.+...++ .|.+.||----|+.-.. ..+-..+-++|+..... +..+.|+--+...+...+++.+ .+-
T Consensus 89 ~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d---~~~~~~~~~al~~Lq~~--~p~l~vs~Tlp~~p~gl~~~g~--~~l 161 (294)
T cd06543 89 ADQLAAAYQKVIDAYGLTHLDFDIEGGALTD---TAAIDRRAQALALLQKE--YPDLKISFTLPVLPTGLTPDGL--NVL 161 (294)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEeccCCcccc---chhHHHHHHHHHHHHHH--CCCcEEEEecCCCCCCCChhHH--HHH
Confidence 3444444444554 59999997655543110 01124555666665432 2356666666544444544332 233
Q ss_pred HHHHhhC--CCCcceEEecCCCCC---C-hHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeeeeecc
Q 021569 153 DSLFRLG--LSSVELYQLHWAGIW---G-NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (311)
Q Consensus 153 ~SL~rL~--~d~iDl~~lH~p~~~---~-~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~~ 226 (311)
+..+.-| +|+|.++-+..-... + -..++.+.+.++.+=+--+=+.|. .++-. .-|+.|.+=+...
T Consensus 162 ~~a~~~Gv~~d~VNiMtmDyg~~~~~~~mg~~a~~aa~~~~~ql~~~~~~~s~---~~~~~------~ig~TpMiG~nD~ 232 (294)
T cd06543 162 EAAAANGVDLDTVNIMTMDYGSSAGSQDMGAAAISAAESLHDQLKDLYPKLSD---AELWA------MIGVTPMIGVNDV 232 (294)
T ss_pred HHHHHcCCCcceeeeeeecCCCCCCcccHHHHHHHHHHHHHHHHHHHccCCCH---HHHHH------HccccccccccCC
Confidence 3334444 466666666543221 1 244556665555543222222222 22211 1233333322221
Q ss_pred C--cCcCCccccchhHHHHHhCCeEEEcccCcc
Q 021569 227 S--LIYRKPEENGVKAACDELGITLIAYCPIAQ 257 (311)
Q Consensus 227 ~--~~~~~~~~~~l~~~~~~~gi~v~a~spL~~ 257 (311)
. .+.....+ .+.++++++||+.+.+..+.+
T Consensus 233 ~~e~ft~~da~-~~~~fA~~~~l~~~s~Ws~~R 264 (294)
T cd06543 233 GSEVFTLADAQ-TLVDFAKEKGLGRLSMWSLNR 264 (294)
T ss_pred CCceeeHHHHH-HHHHHHHhCCCCeEeeeeccC
Confidence 1 12222222 599999999999999988875
No 253
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=30.52 E-value=1.8e+02 Score=25.33 Aligned_cols=88 Identities=17% Similarity=0.187 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccceEeecCC-cHHHHHHHHHHHHhcCCCeee
Q 021569 143 GRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLAS 221 (311)
Q Consensus 143 ~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir~iGvSn~-~~~~l~~~~~~~~~~g~~~~~ 221 (311)
+++...+-+ +.|-.-|++.+.+=+ +. .+.++.+++++++..=-.||.-+. ++++++++.+. |-.|.+
T Consensus 18 ~~e~a~~~~-~al~~~Gi~~iEit~-~t------~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~a----GA~Fiv 85 (204)
T TIGR01182 18 DVDDALPLA-KALIEGGLRVLEVTL-RT------PVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDA----GAQFIV 85 (204)
T ss_pred CHHHHHHHH-HHHHHcCCCEEEEeC-CC------ccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHc----CCCEEE
Confidence 444444433 344455655444322 22 245666777776643356888775 78888887553 445543
Q ss_pred eeeccCcCcCCccccchhHHHHHhCCeEEE
Q 021569 222 NQVNYSLIYRKPEENGVKAACDELGITLIA 251 (311)
Q Consensus 222 ~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a 251 (311)
+|.. ..+++++|+++||.++.
T Consensus 86 -----sP~~----~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 86 -----SPGL----TPELAKHAQDHGIPIIP 106 (204)
T ss_pred -----CCCC----CHHHHHHHHHcCCcEEC
Confidence 3322 12599999999998874
No 254
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=30.43 E-value=4.6e+02 Score=24.54 Aligned_cols=194 Identities=18% Similarity=0.184 Sum_probs=97.4
Q ss_pred hhhHHHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHH
Q 021569 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (311)
Q Consensus 71 ~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~ 150 (311)
..++.++ +.|...++..=--++.|--|+...- |+.+.+-.+... +++++..=.... ...+.....+.
T Consensus 73 ~~T~~q~-~~L~~~L~~~~~~V~~amry~~P~i------~~~v~~l~~~gv-----~~iv~~pLyPqy-S~sTt~s~~~~ 139 (320)
T COG0276 73 VITRAQA-AALEERLDLPDFKVYLAMRYGPPFI------EEAVEELKKDGV-----ERIVVLPLYPQY-SSSTTGSYVDE 139 (320)
T ss_pred HHHHHHH-HHHHHHhCCCCccEEEeecCCCCcH------HHHHHHHHHcCC-----CeEEEEECCccc-ccccHHHHHHH
Confidence 3344443 3445555522224567778887655 777766444332 456665544221 12445566777
Q ss_pred HHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccc------eEeecCCc------------HHHHHHHHHHH
Q 021569 151 LKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK------AVGVSNYS------------EKRLRNAYEKL 212 (311)
Q Consensus 151 ~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir------~iGvSn~~------------~~~l~~~~~~~ 212 (311)
+.+.|++++ ..+.+-.|+.. ......+++|.+.+++-+-. .+=+|.|+ +.++++..+..
T Consensus 140 ~~~al~~~~-~~~~i~~I~~~--~~~p~yI~a~a~~I~~~~~~~~~~~~~llfSaHglP~~~~~~GDpY~~q~~~t~~li 216 (320)
T COG0276 140 LARALKELR-GQPKISTIPDY--YDEPLYIEALADSIREKLAKHPRDDDVLLFSAHGLPKRYIDEGDPYPQQCQETTRLI 216 (320)
T ss_pred HHHHHHhcC-CCCceEEecCc--cCChHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCchhhhhcCCchHHHHHHHHHHH
Confidence 778887777 33565555422 22334455554444332211 12244443 34555544443
Q ss_pred H-hcCCC----eeeeeeccCcCc-CCccccchhHHHHHhCCeEEEcccCccccccCCCCCCCCCCCCCCCCCchHhHhhH
Q 021569 213 K-KRGIP----LASNQVNYSLIY-RKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNL 286 (311)
Q Consensus 213 ~-~~g~~----~~~~Q~~~~~~~-~~~~~~~l~~~~~~~gi~v~a~spL~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~ 286 (311)
. ..|.+ ....|..+.+.- -++...++++.+.+.|+.-+..-|.+ +. .+.++.+
T Consensus 217 ~e~lg~~~~~~~~~~QS~~G~~~WL~P~t~~~l~~L~~~g~k~iiv~pig--Fv-------------------sDhlETL 275 (320)
T COG0276 217 AEALGLPEEEYDLTFQSRFGPEPWLQPYTDDLLEELGEKGVKKIIVVPIG--FV-------------------SDHLETL 275 (320)
T ss_pred HHHcCCCchheeEEeecCCCCCCCCCCCHHHHHHHHHhcCCCeEEEECCc--hh-------------------hhhHHHH
Confidence 2 23321 123455333211 12222357777777788877777765 22 2333444
Q ss_pred HHHHHHHHHHHHhcC
Q 021569 287 QPLLNRIKELGENYS 301 (311)
Q Consensus 287 ~~~~~~l~~iA~~~g 301 (311)
.++-.+.++++++.|
T Consensus 276 ~Eid~e~~e~~~~~G 290 (320)
T COG0276 276 YEIDHEYRELAEEAG 290 (320)
T ss_pred HHHHHHHHHHHHHhC
Confidence 444446677777776
No 255
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=30.34 E-value=96 Score=24.07 Aligned_cols=16 Identities=31% Similarity=0.449 Sum_probs=12.3
Q ss_pred cchhHHHHHhCCeEEE
Q 021569 236 NGVKAACDELGITLIA 251 (311)
Q Consensus 236 ~~l~~~~~~~gi~v~a 251 (311)
.+++++|+++||.++.
T Consensus 92 ~~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 92 EELIEAAREAGIRVIG 107 (116)
T ss_dssp HHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHcCCEEEe
Confidence 3689999999999874
No 256
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=30.27 E-value=2.1e+02 Score=26.25 Aligned_cols=87 Identities=11% Similarity=0.028 Sum_probs=51.5
Q ss_pred cceEEecCCCCCChHHHHHHHHHHHHcCcc-ceEeecCCcHHHHHHHHHHHHhcCCCeeeeeeccCcCcCCccccchhHH
Q 021569 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGLV-KAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAA 241 (311)
Q Consensus 163 iDl~~lH~p~~~~~~~~~~~l~~l~~~G~i-r~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~~ 241 (311)
.++.++-.|-+ .. +.+..|.+.-.+ -..|=|-++.+++..+++. .-++++|+.....---.+-..+.+.
T Consensus 183 ~~i~~iEqP~~--~~---~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~-----~~~d~i~ik~~~~GGi~~~~~i~~~ 252 (307)
T TIGR01927 183 GRIAFLEEPLP--DA---DEMSAFSEATGTAIALDESLWELPQLADEYGP-----GWRGALVIKPAIIGSPAKLRDLAQK 252 (307)
T ss_pred CCceEEeCCCC--CH---HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhc-----CCCceEEECchhcCCHHHHHHHHHH
Confidence 45666665532 22 556666665433 3566677777777776542 1245555554432211111258899
Q ss_pred HHHhCCeEEEcccCcccc
Q 021569 242 CDELGITLIAYCPIAQGA 259 (311)
Q Consensus 242 ~~~~gi~v~a~spL~~G~ 259 (311)
|+.+||.++..+.+.+|+
T Consensus 253 a~~~gi~~~~~~~~es~i 270 (307)
T TIGR01927 253 AHRLGLQAVFSSVFESSI 270 (307)
T ss_pred HHHcCCCEEEECccchHH
Confidence 999999999877776654
No 257
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=30.24 E-value=2.1e+02 Score=25.81 Aligned_cols=99 Identities=16% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhCCCCcceEEecCCC---------CCChHHHHHHHHHHHHcCccce-------EeecCCcHHHHHHHHHH
Q 021569 148 LAALKDSLFRLGLSSVELYQLHWAG---------IWGNEGFIDGLGDAVEQGLVKA-------VGVSNYSEKRLRNAYEK 211 (311)
Q Consensus 148 ~~~~~~SL~rL~~d~iDl~~lH~p~---------~~~~~~~~~~l~~l~~~G~ir~-------iGvSn~~~~~l~~~~~~ 211 (311)
+..+-..|.++|+++|++- .|. .....+.++.+.++...-++.. +|++.+..+-.+..++.
T Consensus 23 ~~~ia~~L~~~Gv~~iE~G---~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~di~~ 99 (275)
T cd07937 23 MLPIAEALDEAGFFSLEVW---GGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVELFVEK 99 (275)
T ss_pred HHHHHHHHHHcCCCEEEcc---CCcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHHHHHH
Q ss_pred HHhcCCCeeeeeeccCcCcCCccccchhHHHHHhCCeEEEc
Q 021569 212 LKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAY 252 (311)
Q Consensus 212 ~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~ 252 (311)
+.+.|+...-+=.+.|-+..-.+ .+++++++|+.+..+
T Consensus 100 ~~~~g~~~iri~~~~~~~~~~~~---~i~~ak~~G~~v~~~ 137 (275)
T cd07937 100 AAKNGIDIFRIFDALNDVRNLEV---AIKAVKKAGKHVEGA 137 (275)
T ss_pred HHHcCCCEEEEeecCChHHHHHH---HHHHHHHCCCeEEEE
No 258
>PRK06424 transcription factor; Provisional
Probab=30.14 E-value=1.9e+02 Score=23.63 Aligned_cols=72 Identities=14% Similarity=0.164 Sum_probs=36.0
Q ss_pred chhHHHHHhCCeEEEc---ccCcc--ccccCCC-C--CCC-CCCCCCCCCCchHhHhhHHHHHHHHHHHHHhcCCCcchh
Q 021569 237 GVKAACDELGITLIAY---CPIAQ--GALTGKY-T--PQN-PPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQF 307 (311)
Q Consensus 237 ~l~~~~~~~gi~v~a~---spL~~--G~Ltg~~-~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~~qv 307 (311)
.+=+-|.+.|..|..+ +|... -.-+... . +.. .....+.+.+.+...+....+-+.|+.+-++.|+|..+|
T Consensus 24 ~vC~~Ca~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~Ir~lRe~~GLSQ~eL 103 (144)
T PRK06424 24 NVCDDCAKFGTPVIEHNKFKEVKEDIKVKLPEKKIIVPTYKKAYKKYKKKASDEDLDIVEDYAELVKNARERLSMSQADL 103 (144)
T ss_pred ehhHHHHHcCCcccccCCCCcccccccccCccccccccccccCCCCccCcccHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 4788899999999998 66543 1111100 0 000 000112222323322223334456666666777777666
Q ss_pred c
Q 021569 308 S 308 (311)
Q Consensus 308 a 308 (311)
|
T Consensus 104 A 104 (144)
T PRK06424 104 A 104 (144)
T ss_pred H
Confidence 5
No 259
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=30.09 E-value=79 Score=31.80 Aligned_cols=55 Identities=24% Similarity=0.403 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhcCCCeeeeeeccCcCcCCccccchhHHHHHhCCeEEEcccCccc
Q 021569 203 KRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQG 258 (311)
Q Consensus 203 ~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spL~~G 258 (311)
..|++.++.++..|+|+.+.=+.|.. +.+.+...+.++|+++|+.++....++.|
T Consensus 359 ~NL~RHIenvr~FGvPvVVAINKFd~-DTe~Ei~~I~~~c~e~Gv~va~~~~~~~G 413 (557)
T PRK13505 359 ANLERHIENIRKFGVPVVVAINKFVT-DTDAEIAALKELCEELGVEVALSEVWAKG 413 (557)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCCCC-CCHHHHHHHHHHHHHcCCCEEEecccccC
Confidence 45667777777788887776666544 33333335889999999999844444443
No 260
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=30.08 E-value=4.3e+02 Score=24.16 Aligned_cols=113 Identities=13% Similarity=0.046 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHHHHhh---CCCCcceEEecCCCC---CChHHHH----HHHHHHHHcCccce-Eeec--C-CcHHHHHH
Q 021569 142 LGRQSVLAALKDSLFRL---GLSSVELYQLHWAGI---WGNEGFI----DGLGDAVEQGLVKA-VGVS--N-YSEKRLRN 207 (311)
Q Consensus 142 ~~~~~i~~~~~~SL~rL---~~d~iDl~~lH~p~~---~~~~~~~----~~l~~l~~~G~ir~-iGvS--n-~~~~~l~~ 207 (311)
.+++.++......+..+ |+-|+|+++-..... .+.++++ +++.+.+++-.|+. +.+| . .+++.+++
T Consensus 65 ~t~e~l~~~~~~~~~e~~~~Gv~y~E~r~~p~~~~~~g~~~~~~~~~~~~~i~~a~~~~gi~~~li~~~~r~~~~~~~~~ 144 (324)
T TIGR01430 65 RTEDDFKRLAYEYVEKAAKDGVVYAEVFFDPQLHTNRGISPDTVVEAVLDGLDEAERDFGIKSRLILCGMRHKQPEAAEE 144 (324)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEEeCccccccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCHHHHHH
Confidence 56777777777776554 888999774422111 2344444 45666555543442 2222 2 24566666
Q ss_pred HHHHHHhcCCC-eeeeeeccCcCcC-CccccchhHHHHHhCCeEEEccc
Q 021569 208 AYEKLKKRGIP-LASNQVNYSLIYR-KPEENGVKAACDELGITLIAYCP 254 (311)
Q Consensus 208 ~~~~~~~~g~~-~~~~Q~~~~~~~~-~~~~~~l~~~~~~~gi~v~a~sp 254 (311)
.++.+...+.. +.-+-+..+.... ...-..+++.++++|+.+..+.-
T Consensus 145 ~~~~~~~~~~~~vvg~~l~~~e~~~~~~~~~~~~~~A~~~g~~i~~Ha~ 193 (324)
T TIGR01430 145 TLELAKPYKEQTIVGFGLAGDERGGPPPDFVRAFAIARELGLHLTVHAG 193 (324)
T ss_pred HHHHHHhhccCcEEEecCCCCCCCCCHHHHHHHHHHHHHCCCCeEEecC
Confidence 66554432211 1111111111110 11112477788888888776543
No 261
>PRK01060 endonuclease IV; Provisional
Probab=30.00 E-value=1.5e+02 Score=26.40 Aligned_cols=36 Identities=14% Similarity=0.079 Sum_probs=20.9
Q ss_pred HHHHhhCCCCcceEEecCCCC----CChHHHHHHHHHHHHc
Q 021569 153 DSLFRLGLSSVELYQLHWAGI----WGNEGFIDGLGDAVEQ 189 (311)
Q Consensus 153 ~SL~rL~~d~iDl~~lH~p~~----~~~~~~~~~l~~l~~~ 189 (311)
+.++++|.|.++|+. +.|.. .-.++.++.+.++.++
T Consensus 19 ~~~~~~G~d~vEl~~-~~p~~~~~~~~~~~~~~~lk~~~~~ 58 (281)
T PRK01060 19 AEAAEIGANAFMIFT-GNPQQWKRKPLEELNIEAFKAACEK 58 (281)
T ss_pred HHHHHcCCCEEEEEC-CCCCCCcCCCCCHHHHHHHHHHHHH
Confidence 566788999999864 33322 1133445555555544
No 262
>PRK10658 putative alpha-glucosidase; Provisional
Probab=29.92 E-value=2.5e+02 Score=29.08 Aligned_cols=89 Identities=15% Similarity=0.272 Sum_probs=56.1
Q ss_pred CCcceEEecCCCCCChHHHHHHHHHHHHc---------CccceEee-cCCcHHHHHHHHHHHHhcCCCeeeeeeccC---
Q 021569 161 SSVELYQLHWAGIWGNEGFIDGLGDAVEQ---------GLVKAVGV-SNYSEKRLRNAYEKLKKRGIPLASNQVNYS--- 227 (311)
Q Consensus 161 d~iDl~~lH~p~~~~~~~~~~~l~~l~~~---------G~ir~iGv-Sn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~--- 227 (311)
+.+|.|++..|+ ..++++...+|--. |.--.-+. .+++.+++.++++..++.++|++++.+.+.
T Consensus 234 ~~ldyy~~~G~t---p~~v~~~Yt~LTGrp~lpP~WalG~w~s~~~~~~~~e~~v~~~~~~~r~~~iP~d~i~lD~~w~~ 310 (665)
T PRK10658 234 EYLEYFVIDGPT---PKEVLDRYTALTGRPALPPAWSFGLWLTTSFTTNYDEATVNSFIDGMAERDLPLHVFHFDCFWMK 310 (665)
T ss_pred CcEEEEEEeCCC---HHHHHHHHHHHhCCCCCCchhhhheeeecccccCCCHHHHHHHHHHHHHcCCCceEEEEchhhhc
Confidence 679999999875 34555554444321 32111111 145677888888888889999988766542
Q ss_pred -----cCc----CCccccchhHHHHHhCCeEEEc
Q 021569 228 -----LIY----RKPEENGVKAACDELGITLIAY 252 (311)
Q Consensus 228 -----~~~----~~~~~~~l~~~~~~~gi~v~a~ 252 (311)
-+. +-+.-.++++..++.|+.++.|
T Consensus 311 ~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~ 344 (665)
T PRK10658 311 EFQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVW 344 (665)
T ss_pred CCceeeeEEChhhCCCHHHHHHHHHHCCCEEEEe
Confidence 110 0011226999999999999877
No 263
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=29.90 E-value=3.9e+02 Score=23.50 Aligned_cols=51 Identities=18% Similarity=0.227 Sum_probs=34.0
Q ss_pred CcHHHHHHHHHHHHhcCCCeeeeeeccCcCcCCccccchhHHHHHhCCeEEEcccCcc
Q 021569 200 YSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQ 257 (311)
Q Consensus 200 ~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spL~~ 257 (311)
.++.++.++.+.++..+++..+....++. .-+-..+++.|+.++.-.||+.
T Consensus 183 ps~~~l~~l~~~ik~~~v~~i~~e~~~~~-------~~~~~la~~~g~~vv~ld~l~~ 233 (256)
T PF01297_consen 183 PSPKDLAELIKLIKENKVKCIFTEPQFSS-------KLAEALAKETGVKVVYLDPLGG 233 (256)
T ss_dssp S-HHHHHHHHHHHHHTT-SEEEEETTS-T-------HHHHHHHHCCT-EEEESSTTCS
T ss_pred CCHHHHHHHHHHhhhcCCcEEEecCCCCh-------HHHHHHHHHcCCcEEEeCCCcC
Confidence 58899999999888888877665444332 1134457888999998889843
No 264
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=29.89 E-value=4.7e+02 Score=24.49 Aligned_cols=121 Identities=21% Similarity=0.267 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHH-------HHhccCCCCCccEEEEeeccCCCCCCCHH
Q 021569 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRF-------IKERKQRDPEVEVTVATKFAALPWRLGRQ 145 (311)
Q Consensus 73 ~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~a-------l~~~~~~~~R~~~~I~tK~~~~~~~~~~~ 145 (311)
+.++...+++.+.+.|++=|=-+ | | |-+|-+- |+... -.++-++|-.
T Consensus 44 s~eei~~~~~~~~~~Gv~kvRlT---G-G--------EPllR~dl~eIi~~l~~~~----~~~islTTNG---------- 97 (322)
T COG2896 44 SLEEIRRLVRAFAELGVEKVRLT---G-G--------EPLLRKDLDEIIARLARLG----IRDLSLTTNG---------- 97 (322)
T ss_pred CHHHHHHHHHHHHHcCcceEEEe---C-C--------CchhhcCHHHHHHHHhhcc----cceEEEecch----------
Confidence 56899999999999999876422 2 2 4333322 22221 2567777765
Q ss_pred HHHHHHHHHHHhhCCCCcceEEecCCCC---------CChHHHHHHHHHHHHcCc----cceEeecCCcHHHHHHHHHHH
Q 021569 146 SVLAALKDSLFRLGLSSVELYQLHWAGI---------WGNEGFIDGLGDAVEQGL----VKAVGVSNYSEKRLRNAYEKL 212 (311)
Q Consensus 146 ~i~~~~~~SL~rL~~d~iDl~~lH~p~~---------~~~~~~~~~l~~l~~~G~----ir~iGvSn~~~~~l~~~~~~~ 212 (311)
........-|+.-|++.|.+ -||..|+ .....+++.+++.++.|. |-.+=+-+++..+|..+++.+
T Consensus 98 ~~L~~~a~~Lk~AGl~rVNV-SLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kgvNd~ei~~l~e~~ 176 (322)
T COG2896 98 VLLARRAADLKEAGLDRVNV-SLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKGVNDDEIEDLLEFA 176 (322)
T ss_pred hhHHHHHHHHHHcCCcEEEe-ecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEEecCCCHHHHHHHHHHH
Confidence 23344556677777666653 3444443 125788999999999987 346667788889999999988
Q ss_pred HhcCCCee
Q 021569 213 KKRGIPLA 220 (311)
Q Consensus 213 ~~~g~~~~ 220 (311)
+..|..+.
T Consensus 177 ~~~~~~lr 184 (322)
T COG2896 177 KERGAQLR 184 (322)
T ss_pred hhcCCceE
Confidence 87765433
No 265
>PRK03459 rnpA ribonuclease P; Reviewed
Probab=29.85 E-value=2.6e+02 Score=22.06 Aligned_cols=61 Identities=8% Similarity=0.035 Sum_probs=42.2
Q ss_pred CccEEEEeeccCCCCCCCHHHHHHHHHHHHHhhCCC---CcceEEecCCCC--CChHHHHHHHHHHHHc
Q 021569 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLS---SVELYQLHWAGI--WGNEGFIDGLGDAVEQ 189 (311)
Q Consensus 126 R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~rL~~d---~iDl~~lH~p~~--~~~~~~~~~l~~l~~~ 189 (311)
|=-+.|+-|+|. -..+..+++-+.++.+.+..+ -.|++++-.+.. .+..++.+.|+.+.+.
T Consensus 49 R~G~~VsKKvG~---AV~RNRiKR~lRe~~R~~~~~l~~g~D~Viiar~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03459 49 RFGLVVSKAVGN---AVIRHRVSRRLRHICADIVDQVPETHHVVIRALPGAATASSAELERDVRAGLGK 114 (122)
T ss_pred EEEEEEeeeccc---hhHHHHHHHHHHHHHHHhhhccCCCcEEEEEECcccccCCHHHHHHHHHHHHHH
Confidence 567888889874 345777888888877776543 479999988764 4556666666665543
No 266
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=29.84 E-value=5.4e+02 Score=25.15 Aligned_cols=109 Identities=11% Similarity=0.033 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHHHHHhhCCCCcceEEecCCC-C-CChHHHHHHHHHHHHcCccceEeecCCc---HHHHHHHHHHHHhcC
Q 021569 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAG-I-WGNEGFIDGLGDAVEQGLVKAVGVSNYS---EKRLRNAYEKLKKRG 216 (311)
Q Consensus 142 ~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~-~-~~~~~~~~~l~~l~~~G~ir~iGvSn~~---~~~l~~~~~~~~~~g 216 (311)
.+++.+.+.+++..+.+ ..++.+-|-.|. + ...+.+++.|..++++..=..+.+|+-. ++.++++.+. |
T Consensus 60 Ltpee~~~~i~~v~~~~--~~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i~i~lsTNG~~l~e~i~~L~~~----g 133 (442)
T TIGR01290 60 LTPEQALRKARQVAAEI--PQLSVVGIAGPGDPLANIGKTFQTLELVARQLPDVKLCLSTNGLMLPEHVDRLVDL----G 133 (442)
T ss_pred CCHHHHHHHHHHHHHhc--CCCCEEEEecCCCcccCccccHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHC----C
Confidence 56777877777776655 235556666643 3 2245678888888887211246666543 5666665432 2
Q ss_pred CCeeeeeeccCcCcCCcc------------------c--------cchhHHHHHhCCeEEEcccCccc
Q 021569 217 IPLASNQVNYSLIYRKPE------------------E--------NGVKAACDELGITLIAYCPIAQG 258 (311)
Q Consensus 217 ~~~~~~Q~~~~~~~~~~~------------------~--------~~l~~~~~~~gi~v~a~spL~~G 258 (311)
++.+.+.++-+++... . .+-++.+.+.|+.+....++-.|
T Consensus 134 --vd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~v~v~~vlIpG 199 (442)
T TIGR01290 134 --VGHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGILVKVNSVLIPG 199 (442)
T ss_pred --CCeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCCeEEEEEEeeCC
Confidence 2233333332221100 0 01245677889888877787765
No 267
>COG0218 Predicted GTPase [General function prediction only]
Probab=29.79 E-value=3.7e+02 Score=23.31 Aligned_cols=100 Identities=13% Similarity=0.031 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHc------CCCeEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHH
Q 021569 74 MKAAKAAFDTSLDN------GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSV 147 (311)
Q Consensus 74 ~~~~~~~l~~Al~~------Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i 147 (311)
.+....+|...++. .+-++|.-..-- ..++.+=+||.... ..-++|.||. ........
T Consensus 90 ~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~--------~~D~em~~~l~~~~----i~~~vv~tK~----DKi~~~~~ 153 (200)
T COG0218 90 KEKWKKLIEEYLEKRANLKGVVLLIDARHPPK--------DLDREMIEFLLELG----IPVIVVLTKA----DKLKKSER 153 (200)
T ss_pred HHHHHHHHHHHHhhchhheEEEEEEECCCCCc--------HHHHHHHHHHHHcC----CCeEEEEEcc----ccCChhHH
Confidence 45666677766653 344667532221 23667778998876 3678999998 45677788
Q ss_pred HHHHHHHHHhhCCCCcce--EEec-CCCCCChHHHHHHHHHHHHc
Q 021569 148 LAALKDSLFRLGLSSVEL--YQLH-WAGIWGNEGFIDGLGDAVEQ 189 (311)
Q Consensus 148 ~~~~~~SL~rL~~d~iDl--~~lH-~p~~~~~~~~~~~l~~l~~~ 189 (311)
.+.+....+.|+.+..|- +++. .....+.++.+..+.+...+
T Consensus 154 ~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 154 NKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred HHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 888999999998877775 3332 22235677888877766543
No 268
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=29.64 E-value=4.2e+02 Score=23.91 Aligned_cols=80 Identities=14% Similarity=0.074 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHHHHH
Q 021569 76 AAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSL 155 (311)
Q Consensus 76 ~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL 155 (311)
+..++.+.++++|..|+=|+--|+.+.+ ....-+++-+.++++.. ..+ +.-|... .-.+.+....-++.--
T Consensus 148 ~i~~a~~~a~~aGADFVKTSTGf~~~gA--t~edv~lm~~~i~~~~~---~~~--vgIKAsG--GIrt~~~A~~~i~ag~ 218 (257)
T PRK05283 148 LIRKASEIAIKAGADFIKTSTGKVPVNA--TLEAARIMLEVIRDMGV---AKT--VGFKPAG--GVRTAEDAAQYLALAD 218 (257)
T ss_pred HHHHHHHHHHHhCCCEEEcCCCCCCCCC--CHHHHHHHHHHHHhccc---CCC--eeEEccC--CCCCHHHHHHHHHHHH
Confidence 4778889999999999999988864221 01122444444443210 012 4455532 2257888888899999
Q ss_pred HhhCCCCcc
Q 021569 156 FRLGLSSVE 164 (311)
Q Consensus 156 ~rL~~d~iD 164 (311)
+.||.+|++
T Consensus 219 ~~lg~~~~~ 227 (257)
T PRK05283 219 EILGADWAD 227 (257)
T ss_pred HHhChhhcC
Confidence 999998876
No 269
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=29.60 E-value=5.1e+02 Score=24.85 Aligned_cols=133 Identities=17% Similarity=0.175 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHH---HHHHHHHhcc-CCCCCccEEEEeeccCCCCCCCHHHHHH
Q 021569 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSET---LLGRFIKERK-QRDPEVEVTVATKFAALPWRLGRQSVLA 149 (311)
Q Consensus 74 ~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~---~lG~al~~~~-~~~~R~~~~I~tK~~~~~~~~~~~~i~~ 149 (311)
..+..+.|+.++|.|+- ...|+. ++ .|-.|.+++- -..+.+.++.+.- +..
T Consensus 40 pp~i~~Al~~rvdhGvf----GY~~~~---------~~~~~ai~~w~~~r~~~~i~~e~i~~~p~------------VVp 94 (388)
T COG1168 40 PPEIIEALRERVDHGVF----GYPYGS---------DELYAAIAHWFKQRHQWEIKPEWIVFVPG------------VVP 94 (388)
T ss_pred CHHHHHHHHHHHhcCCC----CCCCCC---------HHHHHHHHHHHHHhcCCCCCcceEEEcCc------------chH
Confidence 36788899999999963 222333 43 3445555432 1111233333322 333
Q ss_pred HHHHHHHhhCCCCcceEEecCCCCCChH--------------------H---HHHHHHHHHHcCccceEeecC-------
Q 021569 150 ALKDSLFRLGLSSVELYQLHWAGIWGNE--------------------G---FIDGLGDAVEQGLVKAVGVSN------- 199 (311)
Q Consensus 150 ~~~~SL~rL~~d~iDl~~lH~p~~~~~~--------------------~---~~~~l~~l~~~G~ir~iGvSn------- 199 (311)
.+...++.| |+.=|-+.++.|-..|.- . -++.||+...++.++.+=+||
T Consensus 95 gi~~~I~~~-T~~gd~Vvi~tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Gr 173 (388)
T COG1168 95 GISLAIRAL-TKPGDGVVIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHNPTGR 173 (388)
T ss_pred hHHHHHHHh-CcCCCeeEecCCCchHHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCCCCCCCc
Confidence 444444444 355677777776542211 1 267788888888888777776
Q ss_pred -CcHHHHHHHHHHHHhcCCCeeeeeeccCcCcCC
Q 021569 200 -YSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 232 (311)
Q Consensus 200 -~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~ 232 (311)
|+.++|.++.+.|.++|+.+.+-.++-.+....
T Consensus 174 vwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g 207 (388)
T COG1168 174 VWTKEELRKIAELCLRHGVRVISDEIHADLVLGG 207 (388)
T ss_pred cccHHHHHHHHHHHHHcCCEEEeecccccccccC
Confidence 677888888888888887777776666655543
No 270
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=29.54 E-value=3.3e+02 Score=27.10 Aligned_cols=47 Identities=15% Similarity=0.073 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccc
Q 021569 145 QSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK 193 (311)
Q Consensus 145 ~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir 193 (311)
+...+.+++.+++||++ .|.+. ..-++.-.+.+.+.+++|+++|.|-
T Consensus 68 ~~~~~~~~~~l~~LgI~-~D~~~-~t~~~~~~~~v~~~~~~L~~kG~iY 114 (530)
T TIGR00398 68 DKYHEEFKDDWKWLNIS-FDRFI-RTTDEEHKEIVQKIFQKLKENGYIY 114 (530)
T ss_pred HHHHHHHHHHHHHhCCC-CCCCc-cCCCHHHHHHHHHHHHHHHHCCCEE
Confidence 45678899999999997 57432 1111112445778899999999984
No 271
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=29.45 E-value=4.9e+02 Score=25.12 Aligned_cols=106 Identities=22% Similarity=0.130 Sum_probs=54.9
Q ss_pred HHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHHHHHHhhCCCCcceEEecCCCCC-----ChHHHHHHHH
Q 021569 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW-----GNEGFIDGLG 184 (311)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~-----~~~~~~~~l~ 184 (311)
|+-|-++|+....+.+.+-++|.|-+... .--+.+..-+++. +++ .++++.+|-|... ..+.++++|-
T Consensus 71 ~~kL~~~I~~~~~~~~p~~I~V~ttC~~~---~IGdDi~~v~~~~-~~~---~~~vi~v~t~gf~g~~~~G~~~a~~al~ 143 (427)
T cd01971 71 EDRLRELIKSTLSIIDADLFVVLTGCIAE---IIGDDVGAVVSEF-QEG---GAPIVYLETGGFKGNNYAGHEIVLKAII 143 (427)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCCcHH---HhhcCHHHHHHHh-hhc---CCCEEEEECCCcCcccccHHHHHHHHHH
Confidence 77777777664432224667777776321 1112233333332 333 3688999988762 1233444443
Q ss_pred H-HH------HcCccceEeecC-Cc---HHHHHHHHHHHHhcCCCeeee
Q 021569 185 D-AV------EQGLVKAVGVSN-YS---EKRLRNAYEKLKKRGIPLASN 222 (311)
Q Consensus 185 ~-l~------~~G~ir~iGvSn-~~---~~~l~~~~~~~~~~g~~~~~~ 222 (311)
+ +. +.+.|--||..+ .+ ...++++.+.++..|+++.++
T Consensus 144 ~~~~~~~~~~~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~~ 192 (427)
T cd01971 144 DQYVGQSEEKEPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNIL 192 (427)
T ss_pred HHhccCCCCCCCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEEEE
Confidence 2 22 234577888643 12 234445545566677765444
No 272
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=29.11 E-value=38 Score=27.25 Aligned_cols=20 Identities=35% Similarity=0.536 Sum_probs=18.3
Q ss_pred chhHHHHHhCCeEEEcccCc
Q 021569 237 GVKAACDELGITLIAYCPIA 256 (311)
Q Consensus 237 ~l~~~~~~~gi~v~a~spL~ 256 (311)
++++.|++.||.|++|-.+.
T Consensus 48 e~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 48 EQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred HHHHHHHHCCCEEEEEEeee
Confidence 69999999999999997776
No 273
>PLN00191 enolase
Probab=29.10 E-value=2.5e+02 Score=27.70 Aligned_cols=81 Identities=11% Similarity=-0.011 Sum_probs=51.2
Q ss_pred cceEEecCCCCCChHHHHHHHHHHHHcCccceEe-ec-CCcHHHHHHHHHHHHhcCCCeeeeeeccCcCcCCccccchhH
Q 021569 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVG-VS-NYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKA 240 (311)
Q Consensus 163 iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir~iG-vS-n~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~ 240 (311)
.++.+|-.|-+ ++-|+.+.+|.+..+|.-+| =+ ..+++.+.++++. --..++++-.|-+-.-.+..++.+
T Consensus 311 y~I~~IEDPl~---~~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~-----~aad~i~iKl~qiGGITea~~~a~ 382 (457)
T PLN00191 311 YPIVSIEDPFD---QDDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQE-----KACNALLLKVNQIGTVTESIEAVK 382 (457)
T ss_pred CCcEEEECCCC---cccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHh-----CCCCEEEecccccCCHHHHHHHHH
Confidence 45777776643 23477788888888887666 22 2557888887654 124455555443222112225889
Q ss_pred HHHHhCCeEEE
Q 021569 241 ACDELGITLIA 251 (311)
Q Consensus 241 ~~~~~gi~v~a 251 (311)
.|+++|+.++.
T Consensus 383 lA~~~G~~~~i 393 (457)
T PLN00191 383 MSKAAGWGVMT 393 (457)
T ss_pred HHHHCCCEEEe
Confidence 99999999976
No 274
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=29.05 E-value=33 Score=26.12 Aligned_cols=52 Identities=17% Similarity=0.113 Sum_probs=25.8
Q ss_pred cCCcHHHHHHHHHHHHhcCCCeeeeeeccCcCcCCccccchhHHHHHhCCeEEEccc
Q 021569 198 SNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCP 254 (311)
Q Consensus 198 Sn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~sp 254 (311)
|.++.+.++++++. --++++|+...-.---.+-..+.++|+++||.++..+.
T Consensus 3 ~~~~~~~~~~li~~-----~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~ 54 (111)
T PF13378_consen 3 SLFSLHDFRRLIEA-----GAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM 54 (111)
T ss_dssp TSSSHHHHHHHHHT-----TSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS
T ss_pred CCCCHHHHHHHHHc-----CCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC
Confidence 44555666665442 12455555533221100111367777777777777765
No 275
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=29.00 E-value=3.1e+02 Score=25.83 Aligned_cols=82 Identities=15% Similarity=0.076 Sum_probs=44.5
Q ss_pred HHHHHHHHcCCCeEEcCCCC---------CCCcCCCCCchHHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHH
Q 021569 79 AAFDTSLDNGITFFDTAEVY---------GSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (311)
Q Consensus 79 ~~l~~Al~~Gi~~~DTA~~Y---------g~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~ 149 (311)
+.++...++|+|.|.-.--= +.+.+ .+.+-++++...... -+.+-+--=+|. ...+.+.+++
T Consensus 109 e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~s------~~~~~~a~~~l~~~g-~~~v~~dli~Gl--Pgqt~~~~~~ 179 (375)
T PRK05628 109 EFFAALRAAGFTRVSLGMQSAAPHVLAVLDRTHT------PGRAVAAAREARAAG-FEHVNLDLIYGT--PGESDDDWRA 179 (375)
T ss_pred HHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCC------HHHHHHHHHHHHHcC-CCcEEEEEeccC--CCCCHHHHHH
Confidence 35666667899988654333 33322 222334443322100 012322222232 2467888888
Q ss_pred HHHHHHHhhCCCCcceEEecC
Q 021569 150 ALKDSLFRLGLSSVELYQLHW 170 (311)
Q Consensus 150 ~~~~SL~rL~~d~iDl~~lH~ 170 (311)
.++..+ +|+.+++.+|.+.-
T Consensus 180 tl~~~~-~l~~~~i~~y~l~~ 199 (375)
T PRK05628 180 SLDAAL-EAGVDHVSAYALIV 199 (375)
T ss_pred HHHHHH-hcCCCEEEeeeeec
Confidence 887655 59999999988763
No 276
>PRK00915 2-isopropylmalate synthase; Validated
Probab=28.94 E-value=2.8e+02 Score=27.71 Aligned_cols=106 Identities=18% Similarity=0.167 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCc-cceEeecCCcHHHHHHHHHHHHhcCCCee
Q 021569 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGL-VKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (311)
Q Consensus 142 ~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~-ir~iGvSn~~~~~l~~~~~~~~~~g~~~~ 220 (311)
++.+.-. .+-+.|.++|+|+|++- +|.. .+.-++.+.++.+.++ .+..+++......++.+.+.....+.+..
T Consensus 23 ~s~e~K~-~ia~~L~~~Gv~~IE~G---~p~~--s~~d~~~v~~i~~~~~~~~i~a~~r~~~~did~a~~a~~~~~~~~v 96 (513)
T PRK00915 23 LTVEEKL-QIAKQLERLGVDVIEAG---FPAS--SPGDFEAVKRIARTVKNSTVCGLARAVKKDIDAAAEALKPAEAPRI 96 (513)
T ss_pred CCHHHHH-HHHHHHHHcCCCEEEEc---CCCC--ChHHHHHHHHHHhhCCCCEEEEEccCCHHHHHHHHHHhhcCCCCEE
Confidence 4444433 34445888898887763 3321 1122445555544443 56666665666777777765544443322
Q ss_pred eeeeccCcCcC------Cccc-----cchhHHHHHhCCeEEEccc
Q 021569 221 SNQVNYSLIYR------KPEE-----NGVKAACDELGITLIAYCP 254 (311)
Q Consensus 221 ~~Q~~~~~~~~------~~~~-----~~l~~~~~~~gi~v~a~sp 254 (311)
.+-+..|.+.. ..++ .+.+++|+++|..|. |++
T Consensus 97 ~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~-f~~ 140 (513)
T PRK00915 97 HTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVE-FSA 140 (513)
T ss_pred EEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE-EEe
Confidence 22222222221 1100 146778888888764 443
No 277
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=28.92 E-value=5.1e+02 Score=24.59 Aligned_cols=138 Identities=14% Similarity=0.126 Sum_probs=74.9
Q ss_pred hhHHHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHH
Q 021569 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (311)
Q Consensus 72 ~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~ 151 (311)
.+.++..++++.+.+.|++.|-- .| |+---+..-.+++. .++.... -..+.|+|-.. . +.+.+
T Consensus 90 ls~eei~~~i~~~~~~Gv~~I~~---tG-GEPllr~dl~eli~-~l~~~~g---i~~i~itTNG~-----l----L~~~~ 152 (373)
T PLN02951 90 LSQDEIVRLAGLFVAAGVDKIRL---TG-GEPTLRKDIEDICL-QLSSLKG---LKTLAMTTNGI-----T----LSRKL 152 (373)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEE---EC-CCCcchhhHHHHHH-HHHhcCC---CceEEEeeCcc-----h----HHHHH
Confidence 45688889999889999987753 33 32100001112221 2222210 12466666431 1 11222
Q ss_pred HHHHHhhCCCCcceEEecCCCC---------CChHHHHHHHHHHHHcCc--c--ceEeecCCcHHHHHHHHHHHHhcCCC
Q 021569 152 KDSLFRLGLSSVELYQLHWAGI---------WGNEGFIDGLGDAVEQGL--V--KAVGVSNYSEKRLRNAYEKLKKRGIP 218 (311)
Q Consensus 152 ~~SL~rL~~d~iDl~~lH~p~~---------~~~~~~~~~l~~l~~~G~--i--r~iGvSn~~~~~l~~~~~~~~~~g~~ 218 (311)
..|+..|++.|- +-|+..++ ...+.+++.++.+++.|+ | ..+-+-.++.+++.++++.++..++
T Consensus 153 -~~L~~aGld~Vn-ISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~G~~~vkin~vv~~g~N~~Ei~~li~~a~~~gi- 229 (373)
T PLN02951 153 -PRLKEAGLTSLN-ISLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGYNPVKVNCVVMRGFNDDEICDFVELTRDKPI- 229 (373)
T ss_pred -HHHHhCCCCeEE-EeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHcCCCcEEEEEEecCCCCHHHHHHHHHHHHhCCC-
Confidence 234445554433 22233322 124788999999999995 2 2333446788999999998887664
Q ss_pred eeeeeeccCcCc
Q 021569 219 LASNQVNYSLIY 230 (311)
Q Consensus 219 ~~~~Q~~~~~~~ 230 (311)
.+.-++|.|+.
T Consensus 230 -~vr~ie~mP~~ 240 (373)
T PLN02951 230 -NVRFIEFMPFD 240 (373)
T ss_pred -eEEEEEcccCC
Confidence 44445555554
No 278
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=28.88 E-value=4.3e+02 Score=23.70 Aligned_cols=63 Identities=10% Similarity=0.002 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccceEeecCCcHHHHHHH
Q 021569 143 GRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNA 208 (311)
Q Consensus 143 ~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~ 208 (311)
+.+.+.+-+++..+..+ +.+++-|.|......=..+.+++|.+...|..|=-|..+...+.++
T Consensus 110 ~~~~l~~~~~~ia~~~~---~pi~lYn~P~~~g~~ls~~~~~~L~~~p~v~giK~s~~~~~~~~~~ 172 (284)
T cd00950 110 SQEGLYAHFKAIAEATD---LPVILYNVPGRTGVNIEPETVLRLAEHPNIVGIKEATGDLDRVSEL 172 (284)
T ss_pred CHHHHHHHHHHHHhcCC---CCEEEEEChhHhCCCCCHHHHHHHhcCCCEEEEEECCCCHHHHHHH
Confidence 45556666666666532 5566666654322222234445555556555555555555555554
No 279
>PLN02591 tryptophan synthase
Probab=28.65 E-value=4.3e+02 Score=23.66 Aligned_cols=121 Identities=10% Similarity=0.051 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhCCCCcceEEecCC--CC-CChHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeeeee
Q 021569 148 LAALKDSLFRLGLSSVELYQLHWA--GI-WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQV 224 (311)
Q Consensus 148 ~~~~~~SL~rL~~d~iDl~~lH~p--~~-~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~ 224 (311)
.+...+.++.|--..+|++-|--| |+ .+-.-+-++-.+..+.| .+.+++-++++..++.--.|.+...
T Consensus 15 ~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G---------~~~~~~~~~~~~~r~~~~~p~ilm~ 85 (250)
T PLN02591 15 LDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKG---------TTLDSVISMLKEVAPQLSCPIVLFT 85 (250)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcC---------CCHHHHHHHHHHHhcCCCCCEEEEe
Q ss_pred ccCcCcCCccccchhHHHHHhCCeEEEcccCccccccCCCCCCCCCCCCCCCCCchHhHhhHHHHHHHHHHHHHhcCCCc
Q 021569 225 NYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTS 304 (311)
Q Consensus 225 ~~~~~~~~~~~~~l~~~~~~~gi~v~a~spL~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~ 304 (311)
-||++.+...++ .++.|++.|+.=+-.--|- .+-.+.+.+.|+++|+.+
T Consensus 86 Y~N~i~~~G~~~-F~~~~~~aGv~GviipDLP------------------------------~ee~~~~~~~~~~~gl~~ 134 (250)
T PLN02591 86 YYNPILKRGIDK-FMATIKEAGVHGLVVPDLP------------------------------LEETEALRAEAAKNGIEL 134 (250)
T ss_pred cccHHHHhHHHH-HHHHHHHcCCCEEEeCCCC------------------------------HHHHHHHHHHHHHcCCeE
Q ss_pred chhc
Q 021569 305 TQFS 308 (311)
Q Consensus 305 ~qva 308 (311)
..++
T Consensus 135 I~lv 138 (250)
T PLN02591 135 VLLT 138 (250)
T ss_pred EEEe
No 280
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=28.62 E-value=4.6e+02 Score=24.02 Aligned_cols=109 Identities=17% Similarity=0.138 Sum_probs=66.1
Q ss_pred CCHHHHHHHHHHHHHhhCCCCcceEEecCCC-C---CChHHHHHHHHHHHHc--Ccc-ceEeecCCcHHHHHHHHHHHHh
Q 021569 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAG-I---WGNEGFIDGLGDAVEQ--GLV-KAVGVSNYSEKRLRNAYEKLKK 214 (311)
Q Consensus 142 ~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~-~---~~~~~~~~~l~~l~~~--G~i-r~iGvSn~~~~~l~~~~~~~~~ 214 (311)
.+.+.+++-++.-++ .-+|-+++-.-. . ...+|-.+.++..++. |+| --.|++..+..+..++.+.+++
T Consensus 22 vD~~a~~~lv~~li~----~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~ 97 (299)
T COG0329 22 VDEEALRRLVEFLIA----AGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEK 97 (299)
T ss_pred cCHHHHHHHHHHHHH----cCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHh
Confidence 455555555554443 335644443321 1 3466767777766654 666 5678998888888888888888
Q ss_pred cCCCeeeeeec-cCcCcCCccccchhH----HHHHhCCeEEEcc-cCccc
Q 021569 215 RGIPLASNQVN-YSLIYRKPEENGVKA----ACDELGITLIAYC-PIAQG 258 (311)
Q Consensus 215 ~g~~~~~~Q~~-~~~~~~~~~~~~l~~----~~~~~gi~v~a~s-pL~~G 258 (311)
.|..-.++..+ |+... ++++++ .|.+-+++++.|. |...|
T Consensus 98 ~Gad~il~v~PyY~k~~----~~gl~~hf~~ia~a~~lPvilYN~P~~tg 143 (299)
T COG0329 98 LGADGILVVPPYYNKPS----QEGLYAHFKAIAEAVDLPVILYNIPSRTG 143 (299)
T ss_pred cCCCEEEEeCCCCcCCC----hHHHHHHHHHHHHhcCCCEEEEeCccccC
Confidence 88753333333 33333 224544 4556699999997 66555
No 281
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=28.50 E-value=3.3e+02 Score=25.02 Aligned_cols=76 Identities=20% Similarity=0.237 Sum_probs=42.2
Q ss_pred HHHHHHHHcCccceEeecC--C------------cHHHHHHHHHHHHhcCC-CeeeeeeccCcCcCCccccchhHHHHHh
Q 021569 181 DGLGDAVEQGLVKAVGVSN--Y------------SEKRLRNAYEKLKKRGI-PLASNQVNYSLIYRKPEENGVKAACDEL 245 (311)
Q Consensus 181 ~~l~~l~~~G~ir~iGvSn--~------------~~~~l~~~~~~~~~~g~-~~~~~Q~~~~~~~~~~~~~~l~~~~~~~ 245 (311)
+.+++|++.|.. .|.+|- + +.+++.+.++.+.+.|. ++.++-+-..-.+. .+-.+++++++++
T Consensus 109 ~~~~~L~~agl~-~i~ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~-~ei~~l~~~~~~~ 186 (331)
T PRK00164 109 RRAAALKDAGLD-RVNVSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVND-DEIPDLLEWAKDR 186 (331)
T ss_pred HHHHHHHHcCCC-EEEEEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCH-HHHHHHHHHHHhC
Confidence 346788888873 455552 2 23455556666666665 33332221111111 1223689999999
Q ss_pred CCe--EEEcccCccc
Q 021569 246 GIT--LIAYCPIAQG 258 (311)
Q Consensus 246 gi~--v~a~spL~~G 258 (311)
|+. ++.|.|++.+
T Consensus 187 gv~v~~ie~~p~~~~ 201 (331)
T PRK00164 187 GIQLRFIELMPTGEG 201 (331)
T ss_pred CCeEEEEEeeECCCC
Confidence 965 4677787653
No 282
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=28.50 E-value=4.2e+02 Score=23.51 Aligned_cols=74 Identities=24% Similarity=0.232 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeee
Q 021569 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (311)
Q Consensus 144 ~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~ 221 (311)
...+.+.+++.++++| |.++++.... ........+.++.+..++ +..|-++..+.+.+...++.+...++|+.+
T Consensus 13 ~~~~~~gi~~~a~~~g--~~~~i~~~~~-~~d~~~q~~~i~~l~~~~-vdgiIi~~~~~~~~~~~l~~~~~~giPvV~ 86 (302)
T TIGR02637 13 FEAANKGAEEAAKELG--SVYIIYTGPT-GTTAEGQIEVVNSLIAQK-VDAIAISANDPDALVPALKKAMKRGIKVVT 86 (302)
T ss_pred HHHHHHHHHHHHHHhC--CeeEEEECCC-CCCHHHHHHHHHHHHHcC-CCEEEEeCCChHHHHHHHHHHHHCCCEEEE
Confidence 4668888999999887 3444433111 234455567777777764 787888776666666666656666776544
No 283
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=28.40 E-value=4.5e+02 Score=23.80 Aligned_cols=53 Identities=13% Similarity=0.122 Sum_probs=26.0
Q ss_pred CCcHHHHHHHHHHHHh-cCCCeeeeeeccCcCcCCccccchhHHHHHhCCeEEE
Q 021569 199 NYSEKRLRNAYEKLKK-RGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (311)
Q Consensus 199 n~~~~~l~~~~~~~~~-~g~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a 251 (311)
+.+.++++++++.... ....+.++...+|+.-.....+++.++|+++|+.++.
T Consensus 114 ~~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~liv 167 (349)
T cd06454 114 HNDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAPLPELVDLAKKYGAILFV 167 (349)
T ss_pred CCCHHHHHHHHHHhhccCCCeEEEEeccccCCCCccCHHHHHHHHHHcCCEEEE
Confidence 4456667666543210 1122333333444322111223578888888888773
No 284
>PRK14847 hypothetical protein; Provisional
Probab=28.37 E-value=3.3e+02 Score=25.63 Aligned_cols=104 Identities=13% Similarity=0.174 Sum_probs=60.0
Q ss_pred HHHHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCc----cceEeecCCcHHHHHHHHHHHHhcCCCeeeee
Q 021569 148 LAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGL----VKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQ 223 (311)
Q Consensus 148 ~~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~----ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q 223 (311)
+-.+-+.|.++|+|.|.+ -+|. ..++-.+++.++.+.++ ++-.++|-...+.++..++.....+....-+-
T Consensus 56 Kl~IA~~L~~lGVd~IEv---G~Pa--~s~~e~e~ir~I~~~~~~~~~~~i~~~~r~~~~dId~a~e~~~~~~~~~Vhi~ 130 (333)
T PRK14847 56 KLRLFEQLVAVGLKEIEV---AFPS--ASQTDFDFVRKLIDERRIPDDVTIEALTQSRPDLIARTFEALAGSPRAIVHLY 130 (333)
T ss_pred HHHHHHHHHHcCCCEEEe---eCCC--CCHHHHHHHHHHHHhCCCCCCcEEEEEecCcHHHHHHHHHHhCCCCCCEEEEE
Confidence 445667799999877664 3443 22334667777777764 66778888888888888776543322222222
Q ss_pred eccCcCcCC------ccc-----cchhHHHHHhCC---e---EEEcccCc
Q 021569 224 VNYSLIYRK------PEE-----NGVKAACDELGI---T---LIAYCPIA 256 (311)
Q Consensus 224 ~~~~~~~~~------~~~-----~~l~~~~~~~gi---~---v~a~spL~ 256 (311)
++-|.++.. .++ .+.+.++++++. + .+.|+|-.
T Consensus 131 ~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~~~ED 180 (333)
T PRK14847 131 NPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALADANPGTQWIYEYSPET 180 (333)
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccccCCCceEEEEeeec
Confidence 333322221 110 135678888955 2 36666654
No 285
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=28.33 E-value=3.2e+02 Score=27.05 Aligned_cols=75 Identities=16% Similarity=0.188 Sum_probs=45.4
Q ss_pred ChHHHHHHHHHHHHcCccceEeecC----CcHHHHHHHHHHHHhcC-CCeee-eeeccCcCcCCccccchhHHHHHhCCe
Q 021569 175 GNEGFIDGLGDAVEQGLVKAVGVSN----YSEKRLRNAYEKLKKRG-IPLAS-NQVNYSLIYRKPEENGVKAACDELGIT 248 (311)
Q Consensus 175 ~~~~~~~~l~~l~~~G~ir~iGvSn----~~~~~l~~~~~~~~~~g-~~~~~-~Q~~~~~~~~~~~~~~l~~~~~~~gi~ 248 (311)
+.+.+++.++.|+++.-++.+-++. .+.+.+.++.+.+.+.+ +.+.. .+...+.+.+. .++++..++.|+.
T Consensus 223 s~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d---~ell~~l~~aG~~ 299 (497)
T TIGR02026 223 DPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRD---ADILHLYRRAGLV 299 (497)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCC---HHHHHHHHHhCCc
Confidence 4678889999998776677776652 35566666666554443 33221 34444433332 2488888888876
Q ss_pred EEEc
Q 021569 249 LIAY 252 (311)
Q Consensus 249 v~a~ 252 (311)
.+..
T Consensus 300 ~v~i 303 (497)
T TIGR02026 300 HISL 303 (497)
T ss_pred EEEE
Confidence 5543
No 286
>PRK07534 methionine synthase I; Validated
Probab=28.33 E-value=5e+02 Score=24.32 Aligned_cols=176 Identities=15% Similarity=0.018 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHcCCCeEEcCCCCCCCcC---CCC-CchHHHHHHHHH---hccCCCCCccEEEEeeccCCCC------
Q 021569 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRAS---FGA-INSETLLGRFIK---ERKQRDPEVEVTVATKFAALPW------ 140 (311)
Q Consensus 74 ~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s---~~~-~~sE~~lG~al~---~~~~~~~R~~~~I~tK~~~~~~------ 140 (311)
++...++=+.++++|-+.|=|.....+... .+. +..|++.-.+++ +..... ..+++|+.-+|+...
T Consensus 44 Pe~V~~vH~~Yl~AGAdiI~TnTy~as~~~l~~~~~~~~~~~l~~~av~lAr~a~~~~-~~~~~VaGsIGP~g~~l~~~~ 122 (336)
T PRK07534 44 PDNITALHQGFVDAGSDIILTNSFGGTAARLKLHDAQDRVHELNRAAAEIAREVADKA-GRKVIVAGSVGPTGEIMEPMG 122 (336)
T ss_pred HHHHHHHHHHHHHhcCCEEEecCcccCHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhc-CCccEEEEecCCCccccCCCC
Confidence 466777777889999999987654333100 000 012233333332 111000 135788888887421
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccceEeecCCc------HHHHHHHHHHHHh
Q 021569 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYS------EKRLRNAYEKLKK 214 (311)
Q Consensus 141 ~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~------~~~l~~~~~~~~~ 214 (311)
..+.+.+.......++.|--..+|++++--. ....|...+++-+++.++=-.+.++-.+ -..++++.+.++.
T Consensus 123 ~~~~~e~~~~~~~qi~~l~~~gvD~l~~ET~--p~l~E~~a~~~~~~~~~~Pv~vSft~~~~g~l~~G~~~~~~~~~~~~ 200 (336)
T PRK07534 123 ALTHALAVEAFHEQAEGLKAGGADVLWVETI--SAPEEIRAAAEAAKLAGMPWCGTMSFDTAGRTMMGLTPADLADLVEK 200 (336)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEEecc--CCHHHHHHHHHHHHHcCCeEEEEEEECCCCeeCCCCcHHHHHHHHHh
Confidence 1356677778877788774456999999753 2456666666666666765455554321 1335555555443
Q ss_pred cCCCeeeeeeccCc-CcCCccccchhHHHHHh-CCeEEEccc
Q 021569 215 RGIPLASNQVNYSL-IYRKPEENGVKAACDEL-GITLIAYCP 254 (311)
Q Consensus 215 ~g~~~~~~Q~~~~~-~~~~~~~~~l~~~~~~~-gi~v~a~sp 254 (311)
.+..++++-++|.. ... . ...++.....+ ++.+++|--
T Consensus 201 ~~~~~~avGvNC~~gp~~-~-~~~l~~~~~~~~~~pl~vyPN 240 (336)
T PRK07534 201 LGEPPLAFGANCGVGASD-L-LRTVLGFTAQGPERPIIAKGN 240 (336)
T ss_pred cCCCceEEEecCCCCHHH-H-HHHHHHHHHhcCCCeEEEEcC
Confidence 33356777787764 110 0 01234444333 567776643
No 287
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=28.30 E-value=1.4e+02 Score=28.99 Aligned_cols=60 Identities=7% Similarity=0.096 Sum_probs=40.3
Q ss_pred cHHHHHHHHHHHHhcCCCeeeeeeccCcCcCCccccchhHHHHHhCCeEEEcccCcccccc
Q 021569 201 SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALT 261 (311)
Q Consensus 201 ~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spL~~G~Lt 261 (311)
+...++.+.+..++ .++......+-||+..-+.-..+.+.|+++|+.++.=..++.+++.
T Consensus 148 d~~~~~~~~~~i~~-~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p~~~ 207 (409)
T KOG0053|consen 148 DVDDLKKILKAIKE-NTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSPYNQ 207 (409)
T ss_pred chhhHHHHHHhhcc-CceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCccccc
Confidence 34455555444333 3456677778888877665557888888889888887777776443
No 288
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=28.25 E-value=2e+02 Score=29.28 Aligned_cols=67 Identities=21% Similarity=0.270 Sum_probs=29.8
Q ss_pred HHHHHHhhCCCCcceE---EecCCCCCChHHHHHHHHHHHHcCc-cc---------eEeecCCcHHHHHHHHHHHHhcCC
Q 021569 151 LKDSLFRLGLSSVELY---QLHWAGIWGNEGFIDGLGDAVEQGL-VK---------AVGVSNYSEKRLRNAYEKLKKRGI 217 (311)
Q Consensus 151 ~~~SL~rL~~d~iDl~---~lH~p~~~~~~~~~~~l~~l~~~G~-ir---------~iGvSn~~~~~l~~~~~~~~~~g~ 217 (311)
+-..|.+.|++.|++. .++..-.+-.++-|+.|.++++... ++ .+|.++|.-+-+++..+.+.++|+
T Consensus 31 ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~~v~~A~~~Gv 110 (592)
T PRK09282 31 IAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEKFVEKAAENGI 110 (592)
T ss_pred HHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHHHHHHHHHCCC
Confidence 3334555566666653 0110000123345666666555521 22 134455555555555555555544
No 289
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=27.94 E-value=2.8e+02 Score=21.36 Aligned_cols=61 Identities=11% Similarity=0.140 Sum_probs=41.7
Q ss_pred CccEEEEeeccCCCCCCCHHHHHHHHHHHHHhhCC---CCcceEEecCCCC--CChHHHHHHHHHHHHc
Q 021569 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL---SSVELYQLHWAGI--WGNEGFIDGLGDAVEQ 189 (311)
Q Consensus 126 R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~rL~~---d~iDl~~lH~p~~--~~~~~~~~~l~~l~~~ 189 (311)
|=-+.|+-|++. -..+..+++.+.+..+.+.. ...|++++-.+.. .+..++-+.|..|.+.
T Consensus 39 R~GisVsKKvgk---AV~RNriKR~lRE~~R~~~~~~~~~~d~v~i~r~~~~~~~~~~l~~~l~~ll~k 104 (114)
T PRK00499 39 RVGISVSKKVGN---AVVRNRIKRLIRESFRELKDEIKKGYDFVVIARKPAAELDYKEIKKSLIHVLKL 104 (114)
T ss_pred EEEEEEecccCc---hhhHhHHHHHHHHHHHHhhhcccCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 556788888764 35677788888888776533 3579999988765 4556666666665544
No 290
>PLN02321 2-isopropylmalate synthase
Probab=27.87 E-value=1.8e+02 Score=29.91 Aligned_cols=101 Identities=16% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhCCCCcceEE-ecCCCCCChHHHHHHHHHHHHcCc---------cceEeecCCcHHHHHHHHHHHHhcCC
Q 021569 148 LAALKDSLFRLGLSSVELYQ-LHWAGIWGNEGFIDGLGDAVEQGL---------VKAVGVSNYSEKRLRNAYEKLKKRGI 217 (311)
Q Consensus 148 ~~~~~~SL~rL~~d~iDl~~-lH~p~~~~~~~~~~~l~~l~~~G~---------ir~iGvSn~~~~~l~~~~~~~~~~g~ 217 (311)
+-.+-+.|.++|+|+|.+=+ ...|++ ++.+..+.+..+ .+-.+++-.+.+.++.+++.......
T Consensus 110 Kl~Ia~~L~~lGVd~IEvGfP~~Sp~D------~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~dId~A~~al~~a~~ 183 (632)
T PLN02321 110 KLDIARQLAKLGVDIIEAGFPIASPDD------LEAVKTIAKEVGNEVDEDGYVPVICGLSRCNKKDIDAAWEAVKHAKR 183 (632)
T ss_pred HHHHHHHHHHcCCCEEEEeCcCCCccH------HHHHHHHHHhcccCCCccccceeeeeehhccHHhHHHHHHHhcCCCC
Q ss_pred CeeeeeeccCcCcCCcccc-----------chhHHHHHhCCeEEEccc
Q 021569 218 PLASNQVNYSLIYRKPEEN-----------GVKAACDELGITLIAYCP 254 (311)
Q Consensus 218 ~~~~~Q~~~~~~~~~~~~~-----------~l~~~~~~~gi~v~a~sp 254 (311)
+-..+.+..|.++.....+ +.+++|+++|...+.|+|
T Consensus 184 ~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~ 231 (632)
T PLN02321 184 PRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSP 231 (632)
T ss_pred CEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEec
No 291
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=27.73 E-value=1.4e+02 Score=26.99 Aligned_cols=52 Identities=13% Similarity=0.142 Sum_probs=28.1
Q ss_pred cceEeecCC---cHHHHHHHHHHHHh----cCCCeeeeeeccCcCcCCccccchhHHHHHh
Q 021569 192 VKAVGVSNY---SEKRLRNAYEKLKK----RGIPLASNQVNYSLIYRKPEENGVKAACDEL 245 (311)
Q Consensus 192 ir~iGvSn~---~~~~l~~~~~~~~~----~g~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~ 245 (311)
+-|+|+|+. -|++|+++....+. .++++.-+=+-++|-....+ .+.+|+++-
T Consensus 143 LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~--~~~eY~~eF 201 (280)
T KOG2792|consen 143 LIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVE--VVAEYVSEF 201 (280)
T ss_pred EEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHH--HHHHHHHhc
Confidence 668888876 47888877666543 23333223333334221222 467777773
No 292
>PRK00077 eno enolase; Provisional
Probab=27.71 E-value=2.7e+02 Score=27.04 Aligned_cols=96 Identities=17% Similarity=0.056 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcC--ccceEe-ec-CCcHHHHHHHHHHHHhcCCC
Q 021569 143 GRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG--LVKAVG-VS-NYSEKRLRNAYEKLKKRGIP 218 (311)
Q Consensus 143 ~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G--~ir~iG-vS-n~~~~~l~~~~~~~~~~g~~ 218 (311)
+++...+.+.+.++. .++++|-.|-+. +-|+.+.+|.+.- +|.-+| =+ ..+++.+.++++. --
T Consensus 262 s~~e~~~~~~~l~e~-----y~i~~iEdPl~~---~D~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~-----~a 328 (425)
T PRK00077 262 TSEEMIDYLAELVDK-----YPIVSIEDGLDE---NDWEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEK-----GA 328 (425)
T ss_pred CHHHHHHHHHHHHhh-----CCcEEEEcCCCC---ccHHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHh-----CC
Confidence 455555555555554 457777766432 2366666676663 454433 22 2368888888654 13
Q ss_pred eeeeeeccCcCcCCccccchhHHHHHhCCeEEE
Q 021569 219 LASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (311)
Q Consensus 219 ~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a 251 (311)
.+++|+-.+-+-.-.+..++..+|+++|+.++.
T Consensus 329 ~d~v~ik~~~~GGitea~~ia~lA~~~gi~~~v 361 (425)
T PRK00077 329 ANSILIKVNQIGTLTETLDAIELAKRAGYTAVV 361 (425)
T ss_pred CCEEEeCccccCCHHHHHHHHHHHHHcCCeEEE
Confidence 556666554332211222588999999997654
No 293
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=27.62 E-value=3.6e+02 Score=24.06 Aligned_cols=21 Identities=19% Similarity=0.423 Sum_probs=11.3
Q ss_pred HHHHHHHhhCCCCcceEEecCC
Q 021569 150 ALKDSLFRLGLSSVELYQLHWA 171 (311)
Q Consensus 150 ~~~~SL~rL~~d~iDl~~lH~p 171 (311)
.++..|+-.| +|||++-+-|-
T Consensus 13 ~~~d~Le~~g-~yID~lKfg~G 33 (237)
T TIGR03849 13 FVEDYLKVCG-DYITFVKFGWG 33 (237)
T ss_pred HHHHHHHHhh-hheeeEEecCc
Confidence 3444455555 46666666553
No 294
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=27.50 E-value=2.3e+02 Score=30.38 Aligned_cols=68 Identities=15% Similarity=0.125 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHHHHHHhhC--------------------------CCCcceEEecCCCC----CChHHHHHHHHHHHHcC
Q 021569 141 RLGRQSVLAALKDSLFRLG--------------------------LSSVELYQLHWAGI----WGNEGFIDGLGDAVEQG 190 (311)
Q Consensus 141 ~~~~~~i~~~~~~SL~rL~--------------------------~d~iDl~~lH~p~~----~~~~~~~~~l~~l~~~G 190 (311)
+..+.++.+.++..|+.++ +....+++|..|.. .....+|+.+.++++.|
T Consensus 669 G~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g 748 (885)
T KOG0059|consen 669 GLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNG 748 (885)
T ss_pred CCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 3456788889999999876 35567888888753 22467999999999999
Q ss_pred ccceEeecCCcHHHHHHHHH
Q 021569 191 LVKAVGVSNYSEKRLRNAYE 210 (311)
Q Consensus 191 ~ir~iGvSn~~~~~l~~~~~ 210 (311)
+ +|=++.|+-++.+.+..
T Consensus 749 ~--aiiLTSHsMeE~EaLCt 766 (885)
T KOG0059|consen 749 K--AIILTSHSMEEAEALCT 766 (885)
T ss_pred C--EEEEEcCCHHHHHHHhh
Confidence 8 88899999888888743
No 295
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=27.41 E-value=1.8e+02 Score=25.10 Aligned_cols=60 Identities=17% Similarity=0.174 Sum_probs=36.5
Q ss_pred HHHHHHHHHHcCccceEeecCC-cHHHHHHHHHHHHhcCCCeeeeeeccCcCcCCccccchhHHHHHhCCeEEE
Q 021569 179 FIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (311)
Q Consensus 179 ~~~~l~~l~~~G~ir~iGvSn~-~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a 251 (311)
.++.++.++++--=-.||+.+. +.++++++.+. |..|.+ +|.. ..+++++|+++||.++.
T Consensus 46 a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~a----GA~Fiv-----SP~~----~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 46 ALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAA----GAQFIV-----SPGF----DPEVIEYAREYGIPYIP 106 (196)
T ss_dssp HHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHH----T-SEEE-----ESS------HHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHc----CCCEEE-----CCCC----CHHHHHHHHHcCCcccC
Confidence 3444444444322245888775 78888887654 445554 2222 22699999999999984
No 296
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=27.40 E-value=2.9e+02 Score=26.81 Aligned_cols=83 Identities=16% Similarity=0.037 Sum_probs=47.5
Q ss_pred cceEEecCCCCCChHHHHHHHHHHHHcC--ccceEeecC-C-cHHHHHHHHHHHHhcCCCeeeeeeccCcCcCCccccch
Q 021569 163 VELYQLHWAGIWGNEGFIDGLGDAVEQG--LVKAVGVSN-Y-SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGV 238 (311)
Q Consensus 163 iDl~~lH~p~~~~~~~~~~~l~~l~~~G--~ir~iGvSn-~-~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~~~~~l 238 (311)
.+++++-.|-+ ++-|+.+.+|.+.- .+.-+|==+ + +++.++++++. --.+++|+-.+-+-.-.+..++
T Consensus 278 ~~i~~iEdPl~---~~D~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~-----~a~d~v~ik~~~iGGItea~~i 349 (425)
T TIGR01060 278 YPIVSIEDGLS---EEDWEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEM-----GVANSILIKPNQIGTLTETLDA 349 (425)
T ss_pred CCcEEEEcCCC---cccHHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHh-----CCCCEEEecccccCCHHHHHHH
Confidence 46777776643 22366677776654 454333222 2 58888887654 1355666655433221122258
Q ss_pred hHHHHHhCCeEE-Ecc
Q 021569 239 KAACDELGITLI-AYC 253 (311)
Q Consensus 239 ~~~~~~~gi~v~-a~s 253 (311)
...|+++|+.++ ...
T Consensus 350 a~lA~~~Gi~~vv~h~ 365 (425)
T TIGR01060 350 VELAKKAGYTAVISHR 365 (425)
T ss_pred HHHHHHcCCcEEEecC
Confidence 899999999855 444
No 297
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=27.35 E-value=4.2e+02 Score=23.17 Aligned_cols=134 Identities=16% Similarity=0.217 Sum_probs=78.9
Q ss_pred hhHHHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHH-HHH
Q 021569 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSV-LAA 150 (311)
Q Consensus 72 ~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i-~~~ 150 (311)
.++++..++++.|.+.|+.-+-..+.| =....+.|+. ..+-|+|=++. |.....-.. ...
T Consensus 19 ~t~~~i~~~~~~A~~~~~~avcv~p~~-----------v~~a~~~l~~-------~~v~v~tVigF-P~G~~~~~~K~~e 79 (221)
T PRK00507 19 ATEEDIDKLCDEAKEYGFASVCVNPSY-----------VKLAAELLKG-------SDVKVCTVIGF-PLGANTTAVKAFE 79 (221)
T ss_pred CCHHHHHHHHHHHHHhCCeEEEECHHH-----------HHHHHHHhCC-------CCCeEEEEecc-cCCCChHHHHHHH
Confidence 456899999999999888777665554 2233344432 45777887764 333333322 334
Q ss_pred HHHHHHhhCCCCcceEEecCC--CCCChHHHHHHHHHHHHc--Cc-cce-EeecCCcHHHHHHHHHHHHhcCCCeeeeee
Q 021569 151 LKDSLFRLGLSSVELYQLHWA--GIWGNEGFIDGLGDAVEQ--GL-VKA-VGVSNYSEKRLRNAYEKLKKRGIPLASNQV 224 (311)
Q Consensus 151 ~~~SL~rL~~d~iDl~~lH~p--~~~~~~~~~~~l~~l~~~--G~-ir~-iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~ 224 (311)
.++.+ ..|.+-||++ +.+. .....+.+.+.+.++++. |+ ++- +=.+-.+.+++.++.+.+...|..+..--.
T Consensus 80 ~~~Ai-~~GA~EiD~V-in~~~~~~g~~~~v~~ei~~v~~~~~~~~lKvIlEt~~L~~e~i~~a~~~~~~agadfIKTsT 157 (221)
T PRK00507 80 AKDAI-ANGADEIDMV-INIGALKSGDWDAVEADIRAVVEAAGGAVLKVIIETCLLTDEEKVKACEIAKEAGADFVKTST 157 (221)
T ss_pred HHHHH-HcCCceEeee-ccHHHhcCCCHHHHHHHHHHHHHhcCCceEEEEeecCcCCHHHHHHHHHHHHHhCCCEEEcCC
Confidence 44444 3788999954 3332 112456677777777764 43 222 122335778888888887777765443333
Q ss_pred cc
Q 021569 225 NY 226 (311)
Q Consensus 225 ~~ 226 (311)
-|
T Consensus 158 G~ 159 (221)
T PRK00507 158 GF 159 (221)
T ss_pred CC
Confidence 33
No 298
>PRK08508 biotin synthase; Provisional
Probab=27.35 E-value=4.7e+02 Score=23.62 Aligned_cols=75 Identities=12% Similarity=0.062 Sum_probs=40.3
Q ss_pred HHHHHHHHHcCccceEe-----------ec-CCcHHHHHHHHHHHHhcCCCeeeeeeccCcCcCCccccchhHHHHHhCC
Q 021569 180 IDGLGDAVEQGLVKAVG-----------VS-NYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGI 247 (311)
Q Consensus 180 ~~~l~~l~~~G~ir~iG-----------vS-n~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi 247 (311)
-+.|.+|++.|.-++-+ ++ ..+.++..+.++.+++.|+++..- +-+.+.....+..+.+.+.++.+.
T Consensus 102 ~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg-~I~GlGEt~ed~~~~l~~lr~L~~ 180 (279)
T PRK08508 102 VEQLKELKKAGIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSG-GIFGLGESWEDRISFLKSLASLSP 180 (279)
T ss_pred HHHHHHHHHcCCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecce-eEEecCCCHHHHHHHHHHHHcCCC
Confidence 45667778888754431 22 345555555556666666544332 223333332222346667777777
Q ss_pred eEEEcccC
Q 021569 248 TLIAYCPI 255 (311)
Q Consensus 248 ~v~a~spL 255 (311)
..+.+.++
T Consensus 181 ~svpl~~~ 188 (279)
T PRK08508 181 HSTPINFF 188 (279)
T ss_pred CEEeeCCc
Confidence 76655554
No 299
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=27.34 E-value=4.2e+02 Score=23.14 Aligned_cols=72 Identities=11% Similarity=0.144 Sum_probs=43.9
Q ss_pred CCeEEc-CCCCCCCcCCCCCchHHHHHHHHHhccCCCCCccEEEEeeccCCC-----CCCCHHHHHHHHHHHHHhhCCCC
Q 021569 89 ITFFDT-AEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALP-----WRLGRQSVLAALKDSLFRLGLSS 162 (311)
Q Consensus 89 i~~~DT-A~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~-----~~~~~~~i~~~~~~SL~rL~~d~ 162 (311)
.+.++. +..|.... ++.+.+|.+..+ +++..+-|+...- .....+.+.+.+-+.++-|+ +.
T Consensus 19 F~~VEvn~TFY~~P~-------~~t~~~W~~~~p-----~~F~F~vK~~~~iTH~~~l~~~~~~~~~~F~~~~~~L~-~k 85 (230)
T PF01904_consen 19 FNTVEVNSTFYRIPS-------PETVARWREQTP-----EGFRFSVKAPQLITHERRLRDCAEELWRRFLEALEPLG-EK 85 (230)
T ss_dssp -SEEEE-HHCCSSS--------HHHHHHHHCTS------TT-EEEEE--CCCCCCCHCGSSHHHHHHHHHHHCHHHH-T-
T ss_pred CCeEEECcccCCCCC-------HHHHHHHHhhCC-----CCeEEEEeccHHheecccccccHHHHHHHHHHHHHHHh-hc
Confidence 444433 45677643 889999988765 7899999986421 01235566455666999998 89
Q ss_pred cceEEecCCCC
Q 021569 163 VELYQLHWAGI 173 (311)
Q Consensus 163 iDl~~lH~p~~ 173 (311)
+..+++.-|..
T Consensus 86 lg~iL~Q~Pps 96 (230)
T PF01904_consen 86 LGPILFQFPPS 96 (230)
T ss_dssp EEEEEEE--TT
T ss_pred ceEEEEEcCCC
Confidence 99999998854
No 300
>KOG2367 consensus Alpha-isopropylmalate synthase/homocitrate synthase [Amino acid transport and metabolism]
Probab=27.15 E-value=3.8e+02 Score=26.61 Aligned_cols=128 Identities=16% Similarity=0.151 Sum_probs=71.2
Q ss_pred CchhhHHHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCC-CCccEEEEeeccCCCCCCCHHHH
Q 021569 69 WDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRD-PEVEVTVATKFAALPWRLGRQSV 147 (311)
Q Consensus 69 ~~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~-~R~~~~I~tK~~~~~~~~~~~~i 147 (311)
+.+.+.+.+.+++.+...+|.+.|.-++--|.- +-...|+.++...... .|+++.|++.+.+ +.+. .+
T Consensus 198 ~~rse~~fl~eI~~aV~Kag~~tvnipdTVgia-------~P~~y~dLI~y~~tn~~~~e~v~Is~HcHN---D~G~-a~ 266 (560)
T KOG2367|consen 198 FGRSELEFLLEILGAVIKAGVTTVNIPDTVGIA-------TPNEYGDLIEYLKTNTPGREKVCISTHCHN---DLGC-AT 266 (560)
T ss_pred cccCcHHHHHHHHHHHHHhCCccccCcceeccc-------ChHHHHHHHHHHHccCCCceeEEEEEeecC---CccH-HH
Confidence 344567889999999999999988666655542 1355565554332111 2799999999843 2221 11
Q ss_pred HHHHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHH
Q 021569 148 LAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEK 211 (311)
Q Consensus 148 ~~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~ 211 (311)
..+.-. -.-|-++||.-++-.-+....-...+-+-.|+-+| .++==.||+-.+++++...
T Consensus 267 Ant~~g--~~AGA~~VE~~i~GiGERtGn~~L~~v~m~my~~g--~~~vs~~y~~~dlr~I~~m 326 (560)
T KOG2367|consen 267 ANTELG--LLAGARQVEVTINGIGERTGNAPLEEVVMAMYCRG--PDYVSGNYTFIDLREIENM 326 (560)
T ss_pred HHHHHH--hhcCcceEEEEeeccccccCCCCHHHHHHHheecC--chhcCCccccccHHHHHHH
Confidence 111111 22377899988887655533322333333455555 1111235555555555444
No 301
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=27.12 E-value=4.8e+02 Score=23.70 Aligned_cols=66 Identities=9% Similarity=-0.015 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccceEeecCCcHHHHHHHH
Q 021569 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAY 209 (311)
Q Consensus 142 ~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~ 209 (311)
.+.+.+..-+++..+. ++.+.+++.|.|......=..+.+.+|.+...|..|=-|..+..++.++.
T Consensus 110 ~~~~~i~~yf~~v~~~--~~~lpv~lYn~P~~tg~~l~~~~i~~L~~~pnv~giK~s~~d~~~~~~~~ 175 (290)
T TIGR00683 110 FSFPEIKHYYDTIIAE--TGGLNMIVYSIPFLTGVNMGIEQFGELYKNPKVLGVKFTAGDFYLLERLK 175 (290)
T ss_pred CCHHHHHHHHHHHHhh--CCCCCEEEEeCccccccCcCHHHHHHHhcCCCEEEEEeCCCCHHHHHHHH
Confidence 3455666666665554 33467777777754332222344445555565555555555666655553
No 302
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=27.03 E-value=3.3e+02 Score=26.11 Aligned_cols=88 Identities=19% Similarity=0.155 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHH
Q 021569 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (311)
Q Consensus 73 ~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~ 152 (311)
+.+++.+.++.+.++|+..+-.-=+||- ...+.+.+++.++
T Consensus 149 ~~~~~~~ai~~l~~~G~~~v~~dlI~Gl---------------------------------------Pgqt~e~~~~tl~ 189 (400)
T PRK07379 149 RVKDIFAAVDLIHQAGIENFSLDLISGL---------------------------------------PHQTLEDWQASLE 189 (400)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEeecCC---------------------------------------CCCCHHHHHHHHH
Q ss_pred HHHHhhCCCCcceEEec-----------------CCCCCChHHHHHHHHHHHHcCccceEeecCC
Q 021569 153 DSLFRLGLSSVELYQLH-----------------WAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY 200 (311)
Q Consensus 153 ~SL~rL~~d~iDl~~lH-----------------~p~~~~~~~~~~~l~~l~~~G~ir~iGvSn~ 200 (311)
..++ |+.++|.+|.+. .|+.....+.++...+.-++-=-..+++|||
T Consensus 190 ~~~~-l~p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yeisnf 253 (400)
T PRK07379 190 AAIA-LNPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGYEHYEISNY 253 (400)
T ss_pred HHHc-CCCCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCceeeeehe
No 303
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=27.02 E-value=4.1e+02 Score=22.86 Aligned_cols=87 Identities=10% Similarity=0.171 Sum_probs=52.4
Q ss_pred hhCCCCcceEEec-CCCC--CChHH----HHHHHHHHHH--cCccceEeecCCcHHHHHHHHHHHHhcCCCeeeeeeccC
Q 021569 157 RLGLSSVELYQLH-WAGI--WGNEG----FIDGLGDAVE--QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (311)
Q Consensus 157 rL~~d~iDl~~lH-~p~~--~~~~~----~~~~l~~l~~--~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~ 227 (311)
.-|-|+||+=--- +|.. .+.++ +...++.+++ .+ --|.+-+++++.++++++. |.++..+...+.
T Consensus 30 ~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~--~plSIDT~~~~v~~~aL~~----g~~~ind~~~~~ 103 (210)
T PF00809_consen 30 EAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPD--VPLSIDTFNPEVAEAALKA----GADIINDISGFE 103 (210)
T ss_dssp HTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHH----TSSEEEETTTTS
T ss_pred HhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCC--eEEEEECCCHHHHHHHHHc----CcceEEeccccc
Confidence 3578888874332 3332 22233 3344455554 22 3466778899999998654 556655544443
Q ss_pred cCcCCccccchhHHHHHhCCeEEEcccC
Q 021569 228 LIYRKPEENGVKAACDELGITLIAYCPI 255 (311)
Q Consensus 228 ~~~~~~~~~~l~~~~~~~gi~v~a~spL 255 (311)
. ..++++.++++|..+++..--
T Consensus 104 ~------~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 104 D------DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp S------STTHHHHHHHHTSEEEEESES
T ss_pred c------cchhhhhhhcCCCEEEEEecc
Confidence 3 225999999999999886544
No 304
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=26.98 E-value=4.6e+02 Score=23.45 Aligned_cols=14 Identities=21% Similarity=0.344 Sum_probs=8.8
Q ss_pred chhHHHHHhCCeEE
Q 021569 237 GVKAACDELGITLI 250 (311)
Q Consensus 237 ~l~~~~~~~gi~v~ 250 (311)
++++.|+++|+..+
T Consensus 131 ~~~~~~~~~gl~~i 144 (256)
T TIGR00262 131 DLVEAAKKHGVKPI 144 (256)
T ss_pred HHHHHHHHCCCcEE
Confidence 46667777776643
No 305
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=26.90 E-value=2.4e+02 Score=26.02 Aligned_cols=74 Identities=22% Similarity=0.260 Sum_probs=41.6
Q ss_pred HHHHHHHcCccceEeecC--C-------------cHHHHHHHHHHHHhcCCC-eeeeeeccCc-CcCCccccchhHHHHH
Q 021569 182 GLGDAVEQGLVKAVGVSN--Y-------------SEKRLRNAYEKLKKRGIP-LASNQVNYSL-IYRKPEENGVKAACDE 244 (311)
Q Consensus 182 ~l~~l~~~G~ir~iGvSn--~-------------~~~~l~~~~~~~~~~g~~-~~~~Q~~~~~-~~~~~~~~~l~~~~~~ 244 (311)
.+++|++.|. ..|.||- + +.+++.+.++.+.+.|++ +.+ ++-... .+. .+-.++++++++
T Consensus 104 ~~~~L~~~gl-~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~i-n~vv~~g~n~-~ei~~l~~~~~~ 180 (334)
T TIGR02666 104 HAKDLKEAGL-KRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKL-NTVVMRGVND-DEIVDLAEFAKE 180 (334)
T ss_pred HHHHHHHcCC-CeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEE-EEEEeCCCCH-HHHHHHHHHHHh
Confidence 4677888885 4455552 2 234455555666667765 333 221111 111 122368999999
Q ss_pred hCCe--EEEcccCccc
Q 021569 245 LGIT--LIAYCPIAQG 258 (311)
Q Consensus 245 ~gi~--v~a~spL~~G 258 (311)
+|+. ++.+.|++.+
T Consensus 181 ~gv~~~~ie~mp~~~~ 196 (334)
T TIGR02666 181 RGVTLRFIELMPLGEG 196 (334)
T ss_pred cCCeEEEEeccCCCCC
Confidence 9975 4567787654
No 306
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=26.81 E-value=3.4e+02 Score=25.64 Aligned_cols=59 Identities=15% Similarity=0.303 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCcceEEecC-CCC------------CChHHH-----HHHHHHHHHcCccceEeecCCc
Q 021569 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHW-AGI------------WGNEGF-----IDGLGDAVEQGLVKAVGVSNYS 201 (311)
Q Consensus 141 ~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~-p~~------------~~~~~~-----~~~l~~l~~~G~ir~iGvSn~~ 201 (311)
..+.+.+++.++..++ |+.++|.+|.+.- |.. .+.++. ..+.+.|.+.|..+ +++|||.
T Consensus 166 gqt~~~~~~~l~~~~~-l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~-yeis~fa 242 (370)
T PRK06294 166 TQSLSDFIVDLHQAIT-LPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGFTR-YELASYA 242 (370)
T ss_pred CCCHHHHHHHHHHHHc-cCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCCCe-eeeeeee
Confidence 4678888888887764 8999999998863 321 111111 12445566777644 6788875
No 307
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=26.79 E-value=5.9e+02 Score=24.64 Aligned_cols=55 Identities=9% Similarity=-0.006 Sum_probs=32.1
Q ss_pred HHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHHHHHHhhCCCCcceEEecCCCC
Q 021569 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI 173 (311)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~ 173 (311)
++-|-++|+....+...+=++|.|-+- .+-|-..++...++. ..+.++.+|.|..
T Consensus 72 ~~~L~~~i~~~~~~~~P~~I~V~tTC~-------se~IGdDi~~~~~~~--~~~pVi~v~tpgF 126 (422)
T TIGR02015 72 FEDVRCSVHKLADPASYDAIVVINLCV-------PTASGVPLELLPKRI--NGVRVLGIDVPGF 126 (422)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEECCCc-------HHHhcCcHHHHHHhc--CCCCeEEEeCCCC
Confidence 566667777664322236678887763 233333444444432 2469999999886
No 308
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=26.75 E-value=5.6e+02 Score=24.73 Aligned_cols=101 Identities=17% Similarity=0.139 Sum_probs=54.7
Q ss_pred HHHHHHHHHh-ccCCCCCccEEEEeeccCCCCCCCHHHHHHHHHHHHHhhCCC--CcceEEecCCCCCC-----hHHHHH
Q 021569 110 ETLLGRFIKE-RKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLS--SVELYQLHWAGIWG-----NEGFID 181 (311)
Q Consensus 110 E~~lG~al~~-~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~rL~~d--~iDl~~lH~p~~~~-----~~~~~~ 181 (311)
|+-|-+++++ .....+.+=++|.|-+. .+-|=..++...+.+.-+ -++++.+|-|.... .+.+++
T Consensus 81 ~~~L~~ai~ei~~~~~~P~~I~V~tTC~-------~e~IGDDi~~v~~e~~~~~~~~pvv~v~t~Gf~g~~~~G~~~~~~ 153 (427)
T PRK02842 81 NEELDRVVEELIKRRPNISVLFLVGSCP-------SEVIKLDLEGLAERLSTEFAGVPVLNYSGSGLETTFTQGEDAVLA 153 (427)
T ss_pred HHHHHHHHHHHHhccCCCCEEEEECCCh-------HHhhcCCHHHHHHHhhcccCCCeEEEeeCCCccccHHHHHHHHHH
Confidence 7888888877 32111135577777763 222333344444444433 36788888877532 233444
Q ss_pred HHHHHH-----HcCccceEeecCCcHHHHHHHHHHHHhcCCCe
Q 021569 182 GLGDAV-----EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPL 219 (311)
Q Consensus 182 ~l~~l~-----~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~ 219 (311)
+|-+.. ..+.|--+|..|- ..+.++...++..|+++
T Consensus 154 alv~~~~~~~~~~~~VniiG~~~~--~d~~el~~lL~~~Gi~v 194 (427)
T PRK02842 154 ALVPFCPEAPADHPSLVLVGSLAD--VVEDQLTLEFKKLGIGV 194 (427)
T ss_pred HHhhhcccccCCCCcEEEEEeCCc--chHHHHHHHHHHcCCee
Confidence 443332 2466777887553 33455555566677655
No 309
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=26.74 E-value=2.3e+02 Score=23.94 Aligned_cols=85 Identities=26% Similarity=0.325 Sum_probs=55.0
Q ss_pred HHHhhCCCC----cceEEecCCCCCChHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeeeeeccCcC
Q 021569 154 SLFRLGLSS----VELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLI 229 (311)
Q Consensus 154 SL~rL~~d~----iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~ 229 (311)
.|++.|+.- +|==++-|.++...++..+.++++++.|. +-+=+||-+..++..+... .++++.. -
T Consensus 22 ~L~~~Gikgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~gi-~v~vvSNn~e~RV~~~~~~---l~v~fi~-------~ 90 (175)
T COG2179 22 ILKAHGIKGVILDLDNTLVPWDNPDATPELRAWLAELKEAGI-KVVVVSNNKESRVARAAEK---LGVPFIY-------R 90 (175)
T ss_pred HHHHcCCcEEEEeccCceecccCCCCCHHHHHHHHHHHhcCC-EEEEEeCCCHHHHHhhhhh---cCCceee-------c
Confidence 455555432 45566667666677899999999999995 4455999999999887543 2222211 1
Q ss_pred cCCccccchhHHHHHhCCeE
Q 021569 230 YRKPEENGVKAACDELGITL 249 (311)
Q Consensus 230 ~~~~~~~~l~~~~~~~gi~v 249 (311)
-..+....+..++++.++..
T Consensus 91 A~KP~~~~fr~Al~~m~l~~ 110 (175)
T COG2179 91 AKKPFGRAFRRALKEMNLPP 110 (175)
T ss_pred ccCccHHHHHHHHHHcCCCh
Confidence 22223335778888887654
No 310
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=26.74 E-value=4.6e+02 Score=23.53 Aligned_cols=53 Identities=23% Similarity=0.167 Sum_probs=40.0
Q ss_pred CCcHHHHHHHHHHHHhcCCCeeeeeeccCcCcCCccccchhHHHHHhCCeEEEcccCccc
Q 021569 199 NYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQG 258 (311)
Q Consensus 199 n~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spL~~G 258 (311)
.-++.+|.++.+.++..+++..+.+..++.- -+-..+++.|+.++.-.||+.+
T Consensus 203 eps~~~l~~l~~~ik~~~v~~if~e~~~~~~-------~~~~la~~~g~~v~~ld~l~~~ 255 (282)
T cd01017 203 EPSPKQLAELVEFVKKSDVKYIFFEENASSK-------IAETLAKETGAKLLVLNPLETL 255 (282)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCChH-------HHHHHHHHcCCcEEEecccccc
Confidence 3578999999999999998888777766531 1344678889999877788754
No 311
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=26.51 E-value=5.2e+02 Score=23.88 Aligned_cols=14 Identities=14% Similarity=0.169 Sum_probs=9.8
Q ss_pred chhHHHHHhCCeEE
Q 021569 237 GVKAACDELGITLI 250 (311)
Q Consensus 237 ~l~~~~~~~gi~v~ 250 (311)
+.++.+++.|+.+.
T Consensus 157 ~~i~~a~~~Gi~~~ 170 (336)
T PRK06245 157 ETIENAGKLKIPFT 170 (336)
T ss_pred HHHHHHHHcCCcee
Confidence 46777778888764
No 312
>PF03279 Lip_A_acyltrans: Bacterial lipid A biosynthesis acyltransferase; InterPro: IPR004960 Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A []. The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS []. The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids []. These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units. The bacterial lipid A biosynthesis protein, or lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2.3.1 from EC, transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA during lipopolysaccharide core biosynthesis.; GO: 0016746 transferase activity, transferring acyl groups, 0009244 lipopolysaccharide core region biosynthetic process, 0016021 integral to membrane
Probab=26.50 E-value=4.8e+02 Score=23.45 Aligned_cols=64 Identities=19% Similarity=0.221 Sum_probs=39.8
Q ss_pred HHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHHHHHHh
Q 021569 78 KAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFR 157 (311)
Q Consensus 78 ~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~r 157 (311)
.+.++.|++.|=-.|=.+.+||| =++++.+|.... ..+.+..+- .....+.+-+.+...+
T Consensus 110 ~e~l~~a~~~g~gvIl~t~H~Gn---------wE~~~~~l~~~~-----~~~~~i~~~------~~n~~~~~~~~~~R~~ 169 (295)
T PF03279_consen 110 EEHLEAALAEGRGVILLTGHFGN---------WELAGRALARRG-----PPVAVIYRP------QKNPYIDRLLNKLRER 169 (295)
T ss_pred HHHHHHHHhcCCCCEEeCcCcCh---------HHHHHHHHHhhC-----CceEEEecC------CccHhHHHHHHHHHHh
Confidence 35677777777666667788888 457778887654 344444442 1234556666666666
Q ss_pred hCCC
Q 021569 158 LGLS 161 (311)
Q Consensus 158 L~~d 161 (311)
.|.+
T Consensus 170 ~g~~ 173 (295)
T PF03279_consen 170 FGIE 173 (295)
T ss_pred cCCe
Confidence 6654
No 313
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=26.43 E-value=2.5e+02 Score=27.34 Aligned_cols=60 Identities=13% Similarity=0.270 Sum_probs=38.9
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCcceEEe-cCCCC-----------CC-hHHH---H-HHHHHHHHcCccceEeecCCcH
Q 021569 141 RLGRQSVLAALKDSLFRLGLSSVELYQL-HWAGI-----------WG-NEGF---I-DGLGDAVEQGLVKAVGVSNYSE 202 (311)
Q Consensus 141 ~~~~~~i~~~~~~SL~rL~~d~iDl~~l-H~p~~-----------~~-~~~~---~-~~l~~l~~~G~ir~iGvSn~~~ 202 (311)
..+.+.+.+.++..++ |+.++|.+|.+ +.|.. .+ .++. + .+.+.|.+.|. ..++++||..
T Consensus 214 gqt~e~~~~tl~~~~~-l~~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy-~~~~~~~fa~ 290 (455)
T TIGR00538 214 KQTKESFAKTLEKVAE-LNPDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGY-QFIGMDHFAK 290 (455)
T ss_pred CCCHHHHHHHHHHHHh-cCCCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCC-EEEeccceeC
Confidence 4688888888886655 99999999977 22210 11 2222 2 23455666776 5699999964
No 314
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.13 E-value=4.3e+02 Score=22.86 Aligned_cols=74 Identities=16% Similarity=0.143 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeee
Q 021569 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN 222 (311)
Q Consensus 144 ~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~~ 222 (311)
...+.+.+++.++..|. ++.+ +.++....+...+.++.|..+ ++..|=++..+...+...++.+...++|+.++
T Consensus 15 ~~~~~~g~~~~~~~~g~---~v~~-~~~~~~~~~~~~~~i~~l~~~-~vdgiii~~~~~~~~~~~l~~~~~~~ipvV~~ 88 (271)
T cd06312 15 WTVVKNGAEDAAKDLGV---DVEY-RGPETFDVADMARLIEAAIAA-KPDGIVVTIPDPDALDPAIKRAVAAGIPVISF 88 (271)
T ss_pred HHHHHHHHHHHHHHhCC---EEEE-ECCCCCCHHHHHHHHHHHHHh-CCCEEEEeCCChHHhHHHHHHHHHCCCeEEEe
Confidence 45677778888877764 3333 333322445556777777776 46666666555444444444455556665544
No 315
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=25.95 E-value=1.3e+02 Score=23.80 Aligned_cols=54 Identities=24% Similarity=0.363 Sum_probs=33.3
Q ss_pred CcHHHHHHHHHH-HHhcCCCeeeeeeccCcCcCCccccchhHHHHHhCCeEEEccc
Q 021569 200 YSEKRLRNAYEK-LKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCP 254 (311)
Q Consensus 200 ~~~~~l~~~~~~-~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~sp 254 (311)
.+.+++.+++.. ++..++.+..+-.--++-... .+.++++++++.|+.+.-|++
T Consensus 14 ~~~e~i~~ai~~~L~~~~l~~~si~~lasi~~K~-~E~~L~~~A~~lg~pl~~~~~ 68 (126)
T PRK07027 14 VPAEQIEAAIRAALAQRPLASADVRVVATLDLKA-DEAGLLALCARHGWPLRAFSA 68 (126)
T ss_pred CCHHHHHHHHHHHHHHcCCCHHHhheeEehhhhc-CCHHHHHHHHHhCCCeEEeCH
Confidence 466666665544 445555444443333443333 334799999999999998854
No 316
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=25.95 E-value=2.7e+02 Score=27.21 Aligned_cols=87 Identities=11% Similarity=0.127 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHH
Q 021569 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (311)
Q Consensus 73 ~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~ 152 (311)
+.+++.+.++.+.+.|+..+..-=+||- ...+.+.+.+.++
T Consensus 186 ~~~~~~~ai~~lr~~G~~~v~~dli~Gl---------------------------------------Pgqt~e~~~~tl~ 226 (453)
T PRK13347 186 PEEMVARAVELLRAAGFESINFDLIYGL---------------------------------------PHQTVESFRETLD 226 (453)
T ss_pred CHHHHHHHHHHHHhcCCCcEEEeEEEeC---------------------------------------CCCCHHHHHHHHH
Q ss_pred HHHHhhCCCCcceEEe----------------cCCCC-CChHHHHHHHHHHHHcCccceEeecCC
Q 021569 153 DSLFRLGLSSVELYQL----------------HWAGI-WGNEGFIDGLGDAVEQGLVKAVGVSNY 200 (311)
Q Consensus 153 ~SL~rL~~d~iDl~~l----------------H~p~~-~~~~~~~~~l~~l~~~G~ir~iGvSn~ 200 (311)
..+ +|+.++|.+|-+ -.|+. ...+....+.+.|.+.|..+ ++++||
T Consensus 227 ~~~-~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~~-~~~~~f 289 (453)
T PRK13347 227 KVI-ALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGYVP-IGLDHF 289 (453)
T ss_pred HHH-hcCCCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCCEE-Eeccce
No 317
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=25.90 E-value=6.1e+02 Score=24.49 Aligned_cols=102 Identities=14% Similarity=0.117 Sum_probs=55.3
Q ss_pred HHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHHHHHHhhCC----CCcceEEecCCCCCC-----hHHHH
Q 021569 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL----SSVELYQLHWAGIWG-----NEGFI 180 (311)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~rL~~----d~iDl~~lH~p~~~~-----~~~~~ 180 (311)
|+-|-++|+....+.+.+=++|.|-+.. +-+=..++...+++.- ..+.++.++-|+... .+.++
T Consensus 69 ~~kL~~aI~~~~~~~~P~~I~V~ttc~~-------~iiGdDi~~v~~~~~~~~~~~~~~vi~v~t~gF~g~~~~G~~~a~ 141 (429)
T cd03466 69 EKNLKKGLKNVIEQYNPEVIGIATTCLS-------ETIGEDVPRIIREFREEVDDSEPKIIPASTPGYGGTHVEGYDTAV 141 (429)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCchH-------HHhhcCHHHHHHHHhhcccCCCCcEEEEECCCCcccHHHHHHHHH
Confidence 7777788876543322355677776632 2222333333333322 246788888887521 23334
Q ss_pred HHHHH-HH----HcCccceEeecCCcHHHHHHHHHHHHhcCCCe
Q 021569 181 DGLGD-AV----EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPL 219 (311)
Q Consensus 181 ~~l~~-l~----~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~ 219 (311)
++|-+ +. +.++|--||-.+ ++..++++.+.++..|+++
T Consensus 142 ~al~~~~~~~~~~~~~VNlig~~~-~~~D~~ei~~lL~~~Gl~~ 184 (429)
T cd03466 142 RSIVKNIAVDPDKIEKINVIAGMM-SPADIREIKEILREFGIEY 184 (429)
T ss_pred HHHHHHhccCCCCCCcEEEECCCC-ChhHHHHHHHHHHHcCCCe
Confidence 44332 22 246677787543 3555666666677777765
No 318
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=25.83 E-value=5.6e+02 Score=24.03 Aligned_cols=81 Identities=17% Similarity=0.224 Sum_probs=52.3
Q ss_pred ChHHHHHHHHHHHHcCc---cceEeec--CCcHHHHHHHHHHHHhcCCCeeeeeeccCcCcCC---cccc---chhHHH-
Q 021569 175 GNEGFIDGLGDAVEQGL---VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK---PEEN---GVKAAC- 242 (311)
Q Consensus 175 ~~~~~~~~l~~l~~~G~---ir~iGvS--n~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~---~~~~---~l~~~~- 242 (311)
+.+++++++.++.+.|+ ++++=+- |.+.++++++.+.++ +.+..++-++||+.... +..+ ...+..
T Consensus 229 ~le~il~ai~~~~~~~rri~ieyvLI~GvNDseeda~~La~llk--~l~~~vnlI~~N~~~~~~~~p~~~~i~~f~~~l~ 306 (336)
T PRK14470 229 PLDELVEAIREHAALRGRVTLEYVMISGVNVGEEDAAALGRLLA--GIPVRLNPIAVNDATGRYRPPDEDEWNAFRDALA 306 (336)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEEEEecccCCHHHHHHHHHHHh--cCCCeEEEeccCCCCCCccCCCHHHHHHHHHHHH
Confidence 46788899888887754 2343333 567888888887765 35667888899984431 1111 244555
Q ss_pred -HHhCCeEEEcccCcc
Q 021569 243 -DELGITLIAYCPIAQ 257 (311)
Q Consensus 243 -~~~gi~v~a~spL~~ 257 (311)
+++||.+......+.
T Consensus 307 ~~~~g~~~~~R~~~G~ 322 (336)
T PRK14470 307 RELPGTPVVRRYSGGQ 322 (336)
T ss_pred HccCCeEEEEECCCCC
Confidence 356888887766654
No 319
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.68 E-value=4.6e+02 Score=23.11 Aligned_cols=74 Identities=15% Similarity=0.189 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeee
Q 021569 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN 222 (311)
Q Consensus 144 ~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~~ 222 (311)
...+.+.+++.++++|.+ ++++ .+.........+.++.+...+ +..|=+...+.......++.+...++|+..+
T Consensus 14 ~~~~~~gi~~~a~~~g~~---~~~~-~~~~~~~~~~~~~l~~~~~~~-~dgiii~~~~~~~~~~~i~~~~~~~iPvV~~ 87 (294)
T cd06316 14 SNAQVRGAKDEFAKLGIE---VVAT-TDAQFDPAKQVADIETTISQK-PDIIISIPVDPVSTAAAYKKVAEAGIKLVFM 87 (294)
T ss_pred HHHHHHHHHHHHHHcCCE---EEEe-cCCCCCHHHHHHHHHHHHHhC-CCEEEEcCCCchhhhHHHHHHHHcCCcEEEe
Confidence 356788888888888743 3322 222234455667777777654 6766665544333344444455667776554
No 320
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=25.67 E-value=1.4e+02 Score=27.65 Aligned_cols=52 Identities=17% Similarity=0.302 Sum_probs=34.6
Q ss_pred cHHHHHHHHHHHHhcCCCeeeeeec-cC--------------c-CcC--CccccchhHHHHHhCCeEEEc
Q 021569 201 SEKRLRNAYEKLKKRGIPLASNQVN-YS--------------L-IYR--KPEENGVKAACDELGITLIAY 252 (311)
Q Consensus 201 ~~~~l~~~~~~~~~~g~~~~~~Q~~-~~--------------~-~~~--~~~~~~l~~~~~~~gi~v~a~ 252 (311)
+.+++.++++..++.++|++++.+. ++ . +++ -+.-.++++..+++|+.++.+
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~~~~~g~~~~~~f~~d~~~FPdp~~mi~~Lh~~G~~~~~~ 90 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQDWTGRRETSFGDRLWWNWEWDPERYPGLDELIEELKARGIRVLTY 90 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEccccCcccccccceeeeeeEEChhhCCCHHHHHHHHHHCCCEEEEE
Confidence 6778888888888888888887663 10 0 011 011126899999999988754
No 321
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=25.66 E-value=3.3e+02 Score=21.34 Aligned_cols=62 Identities=15% Similarity=0.169 Sum_probs=42.5
Q ss_pred CccEEEEeeccCCCCCCCHHHHHHHHHHHHHhhCC---CCcceEEecCCCC--CChHHHHHHHHHHHHc
Q 021569 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL---SSVELYQLHWAGI--WGNEGFIDGLGDAVEQ 189 (311)
Q Consensus 126 R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~rL~~---d~iDl~~lH~p~~--~~~~~~~~~l~~l~~~ 189 (311)
|=-+.|+-|++. .-..+..|++.+.+..+.+.. ...|++++-.+.. .+..++.+.|..|.+.
T Consensus 48 R~G~~VsKK~~~--~AV~RNriKR~lRe~~R~~~~~l~~g~diVvi~r~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03031 48 RFGISISQKVSK--KAVVRNRIKRQIRAALRQLLPRIAPGWDLVIIVKPTAAECNYEQFLQELEQLLIQ 114 (122)
T ss_pred EEEEEEeccccc--chhhhhHHHHHHHHHHHHhhhccCCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 455777777542 235677788888888876642 3579999998865 4566777777766654
No 322
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=25.62 E-value=97 Score=26.09 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHcCccceEeec
Q 021569 177 EGFIDGLGDAVEQGLVKAVGVS 198 (311)
Q Consensus 177 ~~~~~~l~~l~~~G~ir~iGvS 198 (311)
+++-+.+.+++++| |++|.||
T Consensus 134 ~~v~~~~~~l~~~g-v~avAV~ 154 (176)
T PF05378_consen 134 DEVREALRELKDKG-VEAVAVS 154 (176)
T ss_pred HHHHHHHHHHHhCC-CCEEEEE
Confidence 44445555555555 5555555
No 323
>PLN02775 Probable dihydrodipicolinate reductase
Probab=25.52 E-value=4.1e+02 Score=24.41 Aligned_cols=56 Identities=14% Similarity=0.105 Sum_probs=41.4
Q ss_pred HHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccceEeecCCcHHHHHHHH
Q 021569 151 LKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAY 209 (311)
Q Consensus 151 ~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~ 209 (311)
+++.|..+.-+|.|++++..- .++-+.+.++.+.+.|+--=+|.+.|+.++++++.
T Consensus 68 l~~~l~~~~~~~~~~VvIDFT---~P~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~~ 123 (286)
T PLN02775 68 REAVLSSVKAEYPNLIVVDYT---LPDAVNDNAELYCKNGLPFVMGTTGGDRDRLLKDV 123 (286)
T ss_pred HHHHHHHhhccCCCEEEEECC---ChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHH
Confidence 445554554467887777643 45667888888999998888999999999887663
No 324
>PRK05826 pyruvate kinase; Provisional
Probab=25.42 E-value=6.7e+02 Score=24.78 Aligned_cols=90 Identities=14% Similarity=0.196 Sum_probs=56.3
Q ss_pred HHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHH--HHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHHHHH
Q 021569 78 KAAFDTSLDNGITFFDTAEVYGSRASFGAINSETL--LGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSL 155 (311)
Q Consensus 78 ~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~--lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL 155 (311)
...++.++|.|+.++=.+-.... |.+ +-+.++... .+++.|..|+- +++.+ +.+++.+
T Consensus 176 ~~~i~~ald~g~d~I~~sfV~sa---------edv~~l~~~l~~~~----~~~~~iiakIE------t~eav-~nldeI~ 235 (465)
T PRK05826 176 KADIKFAAEQGVDYIAVSFVRSA---------EDVEEARRLLREAG----CPHAKIIAKIE------RAEAV-DNIDEII 235 (465)
T ss_pred HHHHHHHHHCCCCEEEECCCCCH---------HHHHHHHHHHHHcC----CcCceEEEEEc------CHHHH-HhHHHHH
Confidence 45678999999999976655433 322 245555543 12799999983 45555 5677777
Q ss_pred HhhCCCCcceEEecCCCC---CChHHHHHH----HHHHHHcCcc
Q 021569 156 FRLGLSSVELYQLHWAGI---WGNEGFIDG----LGDAVEQGLV 192 (311)
Q Consensus 156 ~rL~~d~iDl~~lH~p~~---~~~~~~~~~----l~~l~~~G~i 192 (311)
+. +|.+++-+-|- .+.+++... ++..++.||-
T Consensus 236 ~~-----~DgImIgrgDLg~elg~~~v~~~qk~Ii~~c~~~gKp 274 (465)
T PRK05826 236 EA-----SDGIMVARGDLGVEIPDEEVPGLQKKIIRKAREAGKP 274 (465)
T ss_pred HH-----cCEEEECcchhhhhcCcHhHHHHHHHHHHHHHHcCCC
Confidence 65 79999877653 344444333 3445566764
No 325
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=25.39 E-value=5e+02 Score=23.33 Aligned_cols=109 Identities=17% Similarity=0.169 Sum_probs=54.2
Q ss_pred HHHHHHHHc--CCCeEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHHHHH-
Q 021569 79 AAFDTSLDN--GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSL- 155 (311)
Q Consensus 79 ~~l~~Al~~--Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL- 155 (311)
+++++|++. |...|.....-. ... |++ -..+++++ -.+++.+--.. ....+.+...+.+++.+
T Consensus 80 ~v~eaaL~~~~G~~iINsIs~~~-~~~------~~~-~~l~~~~g-----~~vv~m~~~~~-g~P~t~~~~~~~l~~~v~ 145 (261)
T PRK07535 80 AAIEAGLKVAKGPPLINSVSAEG-EKL------EVV-LPLVKKYN-----APVVALTMDDT-GIPKDAEDRLAVAKELVE 145 (261)
T ss_pred HHHHHHHHhCCCCCEEEeCCCCC-ccC------HHH-HHHHHHhC-----CCEEEEecCCC-CCCCCHHHHHHHHHHHHH
Confidence 356667766 766665443211 111 434 35566654 34555442100 01123333334434433
Q ss_pred --HhhCCCCcceEEecCCCC-----CChHHHHHHHHHHHHc--CccceEeecCCc
Q 021569 156 --FRLGLSSVELYQLHWAGI-----WGNEGFIDGLGDAVEQ--GLVKAVGVSNYS 201 (311)
Q Consensus 156 --~rL~~d~iDl~~lH~p~~-----~~~~~~~~~l~~l~~~--G~ir~iGvSn~~ 201 (311)
...|++.=|+++==-..+ ....++++.++.+++. |.=-.+|+||-+
T Consensus 146 ~a~~~GI~~~~IilDPgi~~~~~~~~~~~~~l~~i~~l~~~~pg~p~l~G~Sn~S 200 (261)
T PRK07535 146 KADEYGIPPEDIYIDPLVLPLSAAQDAGPEVLETIRRIKELYPKVHTTCGLSNIS 200 (261)
T ss_pred HHHHcCCCHhHEEEeCCCCcccCChHHHHHHHHHHHHHHHhCCCCCEEEEeCCCc
Confidence 355665323322111111 1245678888888888 887889999965
No 326
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=25.33 E-value=3.2e+02 Score=24.22 Aligned_cols=108 Identities=11% Similarity=0.157 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHHHhhCCCCcceEEecCCCC----CChHHHHHHHHHHHHcCc-cceEeecCC------cHHHHHHHHHH
Q 021569 143 GRQSVLAALKDSLFRLGLSSVELYQLHWAGI----WGNEGFIDGLGDAVEQGL-VKAVGVSNY------SEKRLRNAYEK 211 (311)
Q Consensus 143 ~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~----~~~~~~~~~l~~l~~~G~-ir~iGvSn~------~~~~l~~~~~~ 211 (311)
+++.+..+++...+. .- .+-| +++.-+. .......+-+++|++.|. |..||+=.+ ++..+...++.
T Consensus 101 G~~~i~~af~~ar~~-~P-~a~l-~~Ndy~~~~~~~k~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~~~~~~~~~~~l~~ 177 (254)
T smart00633 101 GEDYIEKAFRYAREA-DP-DAKL-FYNDYNTEEPNAKRQAIYELVKKLKAKGVPIDGIGLQSHLSLGSPNIAEIRAALDR 177 (254)
T ss_pred ChHHHHHHHHHHHHh-CC-CCEE-EEeccCCcCccHHHHHHHHHHHHHHHCCCccceeeeeeeecCCCCCHHHHHHHHHH
Confidence 346677777655443 22 2333 3342111 113456788889999998 999997433 56788888887
Q ss_pred HHhcCCCeeeeeeccCcCcC---Cc-cccchhHHHHHhC--CeEEEcc
Q 021569 212 LKKRGIPLASNQVNYSLIYR---KP-EENGVKAACDELG--ITLIAYC 253 (311)
Q Consensus 212 ~~~~g~~~~~~Q~~~~~~~~---~~-~~~~l~~~~~~~g--i~v~a~s 253 (311)
....|.++.+-.+.+..... +. .-..+++.|.++. .+|+-|.
T Consensus 178 ~~~~g~pi~iTE~dv~~~~~~~~qA~~~~~~l~~~~~~p~v~gi~~Wg 225 (254)
T smart00633 178 FASLGLEIQITELDISGYPNPQAQAADYEEVFKACLAHPAVTGVTVWG 225 (254)
T ss_pred HHHcCCceEEEEeecCCCCcHHHHHHHHHHHHHHHHcCCCeeEEEEeC
Confidence 77777776665555443211 00 1125888888875 6666664
No 327
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=25.30 E-value=58 Score=30.66 Aligned_cols=71 Identities=15% Similarity=0.142 Sum_probs=49.1
Q ss_pred ceeeeecCCccccccccccCCccccccccceeecCCCCcccccceecccccCCCCCCCCCcCchhhHHHHHHHHHHHHHc
Q 021569 8 ACFSVFSGSRVGNIRAVASEGFATVKTAEDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDN 87 (311)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~lg~sg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~Al~~ 87 (311)
|.-+-+=-|+|+.+|-|-..+....+..-++.+-.+ |--|--|.|+|- +..+.++...+.
T Consensus 207 gl~Sram~Sp~G~vrlplN~s~~~~sqi~efl~~y~-G~GIQHIA~~T~-------------------dI~~tv~~lr~r 266 (363)
T COG3185 207 GLRSRAMVSPCGKVRLPLNESADDKSQIGEFLREYR-GEGIQHIAFGTD-------------------DIYATVAALRER 266 (363)
T ss_pred cEEEeeEecCCCcEEeecccCCCchhHHHHHHHHhC-CCcceEEEeccc-------------------HHHHHHHHHHHc
Confidence 333444455677788777777666665555555444 555666777764 456788999999
Q ss_pred CCCeEEcCCCC
Q 021569 88 GITFFDTAEVY 98 (311)
Q Consensus 88 Gi~~~DTA~~Y 98 (311)
|++++++...|
T Consensus 267 G~~fl~ip~tY 277 (363)
T COG3185 267 GVKFLPIPETY 277 (363)
T ss_pred CCccCCCchhH
Confidence 99999999888
No 328
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=25.24 E-value=5.5e+02 Score=23.75 Aligned_cols=125 Identities=14% Similarity=0.110 Sum_probs=66.9
Q ss_pred hhHHHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHH---HHHHhccCCCCCccEEEEeeccCCCCCCCHHHHH
Q 021569 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLG---RFIKERKQRDPEVEVTVATKFAALPWRLGRQSVL 148 (311)
Q Consensus 72 ~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG---~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~ 148 (311)
.+.++..+.++.+.+.|++.|--..-...... ...+- +.|++.. -++ ++ ...++..+.
T Consensus 72 ls~eei~~~~~~~~~~G~~~i~l~gG~~p~~~------~~~~~~li~~Ik~~~-----~~i----~~----~~~s~~ei~ 132 (340)
T TIGR03699 72 LSVEEILQKIEELVAYGGTQILLQGGVNPDLG------LDYYEDLFRAIKARF-----PHI----HI----HSFSPVEIV 132 (340)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCCC------HHHHHHHHHHHHHHC-----CCc----CC----CCCCHHHHH
Confidence 45688888888889999987765321111000 22222 3343321 011 11 112232221
Q ss_pred ----------HHHHHHHHhhCCCCcceE--E-e-----cC--CCCCChHHHHHHHHHHHHcCccce----EeecCCcHHH
Q 021569 149 ----------AALKDSLFRLGLSSVELY--Q-L-----HW--AGIWGNEGFIDGLGDAVEQGLVKA----VGVSNYSEKR 204 (311)
Q Consensus 149 ----------~~~~~SL~rL~~d~iDl~--~-l-----H~--p~~~~~~~~~~~l~~l~~~G~ir~----iGvSn~~~~~ 204 (311)
+..-+.|++.|++.++.. . + +. |.....++.+++++.+++.|.--. +|+ ..+.++
T Consensus 133 ~~~~~~g~~~~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGl-gEt~ed 211 (340)
T TIGR03699 133 YIAKKEGLSLREVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMFGH-VETLED 211 (340)
T ss_pred HHhccCCCCHHHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEeeC-CCCHHH
Confidence 344455667788877631 1 1 11 111356788999999999995322 454 567777
Q ss_pred HHHHHHHHHhcC
Q 021569 205 LRNAYEKLKKRG 216 (311)
Q Consensus 205 l~~~~~~~~~~g 216 (311)
+.+.+..+++.+
T Consensus 212 ~~~~l~~l~~l~ 223 (340)
T TIGR03699 212 RIEHLERIRELQ 223 (340)
T ss_pred HHHHHHHHHHhc
Confidence 777666666544
No 329
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=24.95 E-value=2.3e+02 Score=24.74 Aligned_cols=88 Identities=15% Similarity=0.173 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCc---cceEeecCC-cHHHHHHHHHHHHhcCCC
Q 021569 143 GRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGL---VKAVGVSNY-SEKRLRNAYEKLKKRGIP 218 (311)
Q Consensus 143 ~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~---ir~iGvSn~-~~~~l~~~~~~~~~~g~~ 218 (311)
+.+....-++ .|-.-|+.-+.+=+ - .....+.+++|+++-. =-.||+-.. ++++++++.+. |..
T Consensus 23 ~~~~a~~~~~-al~~~Gi~~iEit~---~----~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~a----GA~ 90 (213)
T PRK06552 23 SKEEALKISL-AVIKGGIKAIEVTY---T----NPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILA----GAQ 90 (213)
T ss_pred CHHHHHHHHH-HHHHCCCCEEEEEC---C----CccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHc----CCC
Confidence 4555444443 44445655444322 1 2235666777766421 135887765 78888887543 445
Q ss_pred eeeeeeccCcCcCCccccchhHHHHHhCCeEEE
Q 021569 219 LASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (311)
Q Consensus 219 ~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a 251 (311)
|.+ +|.. ..+++++|+++||.++.
T Consensus 91 Fiv-----sP~~----~~~v~~~~~~~~i~~iP 114 (213)
T PRK06552 91 FIV-----SPSF----NRETAKICNLYQIPYLP 114 (213)
T ss_pred EEE-----CCCC----CHHHHHHHHHcCCCEEC
Confidence 554 3322 22599999999988873
No 330
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=24.86 E-value=1.4e+02 Score=27.80 Aligned_cols=50 Identities=16% Similarity=0.370 Sum_probs=25.8
Q ss_pred cHHHHHHHHHHHHhcCCCeeeeeeccC-----------c-CcCCccccchhHHHHHhCCeEEEc
Q 021569 201 SEKRLRNAYEKLKKRGIPLASNQVNYS-----------L-IYRKPEENGVKAACDELGITLIAY 252 (311)
Q Consensus 201 ~~~~l~~~~~~~~~~g~~~~~~Q~~~~-----------~-~~~~~~~~~l~~~~~~~gi~v~a~ 252 (311)
+.+++.++++..++.++|++++.+... . ..+++ .++++.++++|+.++.+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~~~~~f~~d~~~fPdp--~~m~~~l~~~g~~~~~~ 83 (339)
T cd06604 22 PEEEVREIADEFRERDIPCDAIYLDIDYMDGYRVFTWDKERFPDP--KELIKELHEQGFKVVTI 83 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECchhhCCCCceeeccccCCCH--HHHHHHHHHCCCEEEEE
Confidence 344555555555555565555544411 1 11111 25777777777777654
No 331
>COG3454 Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=24.83 E-value=80 Score=29.65 Aligned_cols=42 Identities=26% Similarity=0.372 Sum_probs=25.1
Q ss_pred cCCcHHHHHHHHHHHHhcCCCeeeeeeccCcCcCCccccchhHHHHHhCCeEE
Q 021569 198 SNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLI 250 (311)
Q Consensus 198 Sn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~ 250 (311)
++++.++++++.+. -...|-.|+.-.+. .+.+.|+++||.+-
T Consensus 186 ~~~s~~e~~~~i~~-------r~a~~~~y~~~~r~----~i~~~c~~rgI~lA 227 (377)
T COG3454 186 RGLSDEEFAEFIEE-------RQALSARYSDPNRQ----AIAALCRERGIALA 227 (377)
T ss_pred cCCCHHHHHHHHHH-------HHHHHhhcccchHH----HHHHHHHHcCCcee
Confidence 44555565555432 12245566654542 58899999998774
No 332
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=24.69 E-value=2.4e+02 Score=30.02 Aligned_cols=97 Identities=12% Similarity=0.161 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHc--CccceEeecCCcHHHHHHHHHHHHhcCCCee
Q 021569 143 GRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ--GLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (311)
Q Consensus 143 ~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~--G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~ 220 (311)
+-+.|++-.+.....--...--+|+|+..+... .+..++|.+..++ ..+..|-+++....-+..+.+ .
T Consensus 101 ~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt-~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrS---------R 170 (824)
T PRK07764 101 GVDDARELRERAFFAPAESRYKIFIIDEAHMVT-PQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRS---------R 170 (824)
T ss_pred CHHHHHHHHHHHHhchhcCCceEEEEechhhcC-HHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHh---------h
Confidence 456666544443322222455788888766433 4678888888888 889999998654322222221 1
Q ss_pred eeeeccCcCcCCccccchhHHHHHhCCeE
Q 021569 221 SNQVNYSLIYRKPEENGVKAACDELGITL 249 (311)
Q Consensus 221 ~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v 249 (311)
+..++|.++....-..-|...|++.||.+
T Consensus 171 c~~v~F~~l~~~~l~~~L~~il~~EGv~i 199 (824)
T PRK07764 171 THHYPFRLVPPEVMRGYLERICAQEGVPV 199 (824)
T ss_pred eeEEEeeCCCHHHHHHHHHHHHHHcCCCC
Confidence 34456665543221112445566667754
No 333
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=24.67 E-value=1e+02 Score=27.85 Aligned_cols=39 Identities=18% Similarity=0.184 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHH
Q 021569 76 AAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGR 115 (311)
Q Consensus 76 ~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~ 115 (311)
.+.+-.-.|+++|+++||++ .+|.|+..|+..-|.++..
T Consensus 208 la~An~laA~~aGa~~id~s-~~GlGeraGn~~~e~~~~~ 246 (273)
T cd07941 208 LAVANSLAAVEAGATQVQGT-INGYGERCGNANLCSIIPN 246 (273)
T ss_pred cHHHHHHHHHHcCCCEEEEe-ccccccccccccHHHHHHH
Confidence 44555667888999999987 5677766555555666543
No 334
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=24.63 E-value=3.8e+02 Score=24.07 Aligned_cols=63 Identities=24% Similarity=0.322 Sum_probs=44.3
Q ss_pred CCcceEEecCCCCCChHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeeeeeccCc
Q 021569 161 SSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSL 228 (311)
Q Consensus 161 d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~ 228 (311)
+.+|++..-. +++...+.+..+.+.|+---+|-..|+.++++++.+.+++.|+++ ++-.+|++
T Consensus 67 ~~~DvVIdfT----~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v-~~a~NfSl 129 (266)
T TIGR00036 67 TDPDVLIDFT----TPEGVLNHLKFALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAA-VIAPNFSI 129 (266)
T ss_pred CCCCEEEECC----ChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccE-EEECcccH
Confidence 4478765543 456677888888999988888888899999888888877766533 33344443
No 335
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=24.58 E-value=5.6e+02 Score=24.76 Aligned_cols=59 Identities=14% Similarity=0.098 Sum_probs=39.2
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCcceEEecCCCCC-------Ch-HH---HH-HHHHHHHHcCccceEeecCCc
Q 021569 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW-------GN-EG---FI-DGLGDAVEQGLVKAVGVSNYS 201 (311)
Q Consensus 141 ~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~-------~~-~~---~~-~~l~~l~~~G~ir~iGvSn~~ 201 (311)
..+.+.+.+.++..+ +|+.++|.+|.+.-.... +. ++ .+ .+.+.|.+.|. +.+++|||.
T Consensus 204 ~qt~e~~~~~l~~~~-~l~~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy-~~yei~~fa 274 (430)
T PRK08208 204 GQTHASWMESLDQAL-VYRPEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLLEAGY-TQTSMRMFR 274 (430)
T ss_pred CCCHHHHHHHHHHHH-hCCCCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHHHcCC-eEEeeccee
Confidence 477888888888776 589999999987642211 11 11 22 34566777775 448888885
No 336
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=24.53 E-value=5.4e+02 Score=23.43 Aligned_cols=141 Identities=17% Similarity=0.171 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHHH-H
Q 021569 76 AAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD-S 154 (311)
Q Consensus 76 ~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~~-S 154 (311)
-..++-....+.|+|..|....-... .+.+++..-+.......+.+.++++++. .
T Consensus 13 IVA~Vt~~La~~g~NI~d~sq~~~~~------------------------~~~F~mr~~v~~~~~~~~~~~l~~~l~~~~ 68 (280)
T TIGR00655 13 LVAAISTFIAKHGANIISNDQHTDPE------------------------TGRFFMRVEFQLEGFRLEESSLLAAFKSAL 68 (280)
T ss_pred hHHHHHHHHHHCCCCEEeeeEEEcCC------------------------CCeEEEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 34556667779999999987654320 1344444444321123568889999998 8
Q ss_pred HHhhCCCCcceEEecCCCCC--------ChHHHHHHHHHHHHcCcc--ce-EeecCCcHHHHHHHHHHHHhcCCCeeeee
Q 021569 155 LFRLGLSSVELYQLHWAGIW--------GNEGFIDGLGDAVEQGLV--KA-VGVSNYSEKRLRNAYEKLKKRGIPLASNQ 223 (311)
Q Consensus 155 L~rL~~d~iDl~~lH~p~~~--------~~~~~~~~l~~l~~~G~i--r~-iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q 223 (311)
-+.|+++ +.+|..+.. ....-+++|-+..++|.+ .- .=+||.. .+... +++.|+|+....
T Consensus 69 ~~~~~l~----i~l~~~~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~visn~~--~~~~~---A~~~gIp~~~~~ 139 (280)
T TIGR00655 69 AEKFEMT----WELILADKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALVISNHE--DLRSL---VERFGIPFHYIP 139 (280)
T ss_pred HHHhCCE----EEEecCCCCcEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEEcCh--hHHHH---HHHhCCCEEEcC
Confidence 8888875 466665431 234557777777788864 22 2356764 22222 566677655433
Q ss_pred eccCcCcCCccccchhHHHHHhCCeEEE
Q 021569 224 VNYSLIYRKPEENGVKAACDELGITLIA 251 (311)
Q Consensus 224 ~~~~~~~~~~~~~~l~~~~~~~gi~v~a 251 (311)
.. ...+...+..+++.++++++.++.
T Consensus 140 ~~--~~~~~~~e~~~~~~l~~~~~Dliv 165 (280)
T TIGR00655 140 AT--KDNRVEHEKRQLELLKQYQVDLVV 165 (280)
T ss_pred CC--CcchhhhHHHHHHHHHHhCCCEEE
Confidence 22 123322233588889999877763
No 337
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=24.48 E-value=81 Score=28.80 Aligned_cols=43 Identities=14% Similarity=0.081 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHHHh
Q 021569 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKE 119 (311)
Q Consensus 75 ~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~ 119 (311)
..+..-.-.|+++|+++||++- .|.|...|+...|.++-- |+.
T Consensus 215 Gla~AN~laA~~aG~~~vd~sv-~GlGe~aGN~~tE~lv~~-l~~ 257 (279)
T cd07947 215 YKAVANAVAAWLYGASWVNCTL-LGIGERTGNCPLEAMVIE-YAQ 257 (279)
T ss_pred ChHHHHHHHHHHhCCCEEEEec-ccccccccchhHHHHHHH-HHH
Confidence 4556667889999999999984 566655565566777643 443
No 338
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=24.27 E-value=1.5e+02 Score=23.72 Aligned_cols=25 Identities=0% Similarity=0.028 Sum_probs=14.8
Q ss_pred HHHHHHHHhhCCCCcceEEecCCCC
Q 021569 149 AALKDSLFRLGLSSVELYQLHWAGI 173 (311)
Q Consensus 149 ~~~~~SL~rL~~d~iDl~~lH~p~~ 173 (311)
..+++.|+.+....+|.++++..+.
T Consensus 55 p~l~~ll~~~~~g~vd~vvv~~ldR 79 (140)
T cd03770 55 PGFNRMIEDIEAGKIDIVIVKDMSR 79 (140)
T ss_pred HHHHHHHHHHHcCCCCEEEEeccch
Confidence 3455555555556677777766654
No 339
>PF13289 SIR2_2: SIR2-like domain
Probab=24.27 E-value=2e+02 Score=22.42 Aligned_cols=68 Identities=13% Similarity=0.094 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcC-C-CeeeeeeccCcCcCCccccchhHHHHHhCCeEE
Q 021569 177 EGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRG-I-PLASNQVNYSLIYRKPEENGVKAACDELGITLI 250 (311)
Q Consensus 177 ~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g-~-~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~ 250 (311)
..+++.+.++.....+-.||.|--+ ..+..++..+.... - +....-+..+. ......++.++.||.+|
T Consensus 74 ~~~~~~l~~~l~~~~~lfiGys~~D-~~i~~~l~~~~~~~~~~~~~~~~v~~~~-----~~~~~~~~~~~~~i~~I 143 (143)
T PF13289_consen 74 PWFPNFLRSLLRSKTLLFIGYSFND-PDIRQLLRSALENSGKSRPRHYIVIPDP-----DDENEREFLEKYGIEVI 143 (143)
T ss_pred HHHHHHHHHHHcCCCEEEEEECCCC-HHHHHHHHHHHHhccCCCccEEEEEcCC-----chHHHHHHHHHcCCEEC
Confidence 4567778888888899999999544 46666665543322 2 11222121111 11246788899998874
No 340
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=24.20 E-value=1.5e+02 Score=28.38 Aligned_cols=52 Identities=12% Similarity=0.253 Sum_probs=29.7
Q ss_pred CCcHHHHHHHHHHHHhcCCCeeeeeeccCcCcCCccc----cchhHHHHHhCCeEE
Q 021569 199 NYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE----NGVKAACDELGITLI 250 (311)
Q Consensus 199 n~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~~~----~~l~~~~~~~gi~v~ 250 (311)
||+.+.|+++++.....+++..+.-+-.|...-++.. .++.++|++++|.|+
T Consensus 168 d~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv 223 (471)
T COG3033 168 NFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVV 223 (471)
T ss_pred ccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEE
Confidence 5556666666544333345655655665555544422 146777777777776
No 341
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=24.20 E-value=2.1e+02 Score=25.93 Aligned_cols=51 Identities=24% Similarity=0.328 Sum_probs=40.1
Q ss_pred CChHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeeeeeccC
Q 021569 174 WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (311)
Q Consensus 174 ~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~ 227 (311)
..++.+.+.++.+.+.|+.--||.+.|+.++++++.+.++. + +.+.--+||
T Consensus 77 T~P~~~~~~l~~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~--v-~vv~a~NfS 127 (266)
T COG0289 77 TTPEATLENLEFALEHGKPLVIGTTGFTEEQLEKLREAAEK--V-PVVIAPNFS 127 (266)
T ss_pred CCchhhHHHHHHHHHcCCCeEEECCCCCHHHHHHHHHHHhh--C-CEEEeccch
Confidence 45678899999999999999999999999999999887765 2 334444444
No 342
>PRK08445 hypothetical protein; Provisional
Probab=24.17 E-value=6e+02 Score=23.84 Aligned_cols=21 Identities=14% Similarity=0.137 Sum_probs=16.0
Q ss_pred chhHHHHHhCCeEEEcccCcc
Q 021569 237 GVKAACDELGITLIAYCPIAQ 257 (311)
Q Consensus 237 ~l~~~~~~~gi~v~a~spL~~ 257 (311)
+.++.+++.||.+.+..-++.
T Consensus 186 ~~i~~a~~~Gi~~~sg~i~G~ 206 (348)
T PRK08445 186 EVHRQAHLIGMKSTATMMFGT 206 (348)
T ss_pred HHHHHHHHcCCeeeeEEEecC
Confidence 488899999999876555554
No 343
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=23.91 E-value=5.4e+02 Score=23.19 Aligned_cols=121 Identities=8% Similarity=0.027 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhCCCCcceEEecCC--CC-CChHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeeeee
Q 021569 148 LAALKDSLFRLGLSSVELYQLHWA--GI-WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQV 224 (311)
Q Consensus 148 ~~~~~~SL~rL~~d~iDl~~lH~p--~~-~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~ 224 (311)
.+...+.++.|--.-+|++-|--| |+ .+-.-+-++-++..+.| ++.+.+-++++..+..--.|.+...
T Consensus 28 ~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g---------~~~~~~~~~~~~~r~~~~~p~vlm~ 98 (263)
T CHL00200 28 IVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQG---------INLNKILSILSEVNGEIKAPIVIFT 98 (263)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcC---------CCHHHHHHHHHHHhcCCCCCEEEEe
Q ss_pred ccCcCcCCccccchhHHHHHhCCeEEEcccCccccccCCCCCCCCCCCCCCCCCchHhHhhHHHHHHHHHHHHHhcCCCc
Q 021569 225 NYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTS 304 (311)
Q Consensus 225 ~~~~~~~~~~~~~l~~~~~~~gi~v~a~spL~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~ 304 (311)
-||++.+...++ .++.|++.|+.-+..--|- .+-.+.+.+.++++|+.+
T Consensus 99 Y~N~i~~~G~e~-F~~~~~~aGvdgviipDLP------------------------------~ee~~~~~~~~~~~gi~~ 147 (263)
T CHL00200 99 YYNPVLHYGINK-FIKKISQAGVKGLIIPDLP------------------------------YEESDYLISVCNLYNIEL 147 (263)
T ss_pred cccHHHHhCHHH-HHHHHHHcCCeEEEecCCC------------------------------HHHHHHHHHHHHHcCCCE
Q ss_pred chhc
Q 021569 305 TQFS 308 (311)
Q Consensus 305 ~qva 308 (311)
..+.
T Consensus 148 I~lv 151 (263)
T CHL00200 148 ILLI 151 (263)
T ss_pred EEEE
No 344
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=23.88 E-value=6.6e+02 Score=24.23 Aligned_cols=67 Identities=7% Similarity=-0.001 Sum_probs=36.9
Q ss_pred HHHHHHHhhCCCCcceEEecCCC-------C-CChHHHHHHHHHHHHcCcc-----ceEeecCCcHHHHHHHHHHHHhcC
Q 021569 150 ALKDSLFRLGLSSVELYQLHWAG-------I-WGNEGFIDGLGDAVEQGLV-----KAVGVSNYSEKRLRNAYEKLKKRG 216 (311)
Q Consensus 150 ~~~~SL~rL~~d~iDl~~lH~p~-------~-~~~~~~~~~l~~l~~~G~i-----r~iGvSn~~~~~l~~~~~~~~~~g 216 (311)
..-+.|+++|+++|.+=.=...+ . ...+++.++++.+++.|.- --+|+-+-+.+.+++.++.+...+
T Consensus 142 e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~qt~e~~~~~l~~~~~l~ 221 (430)
T PRK08208 142 EKLALLAARGVNRLSIGVQSFHDSELHALHRPQKRADVHQALEWIRAAGFPILNIDLIYGIPGQTHASWMESLDQALVYR 221 (430)
T ss_pred HHHHHHHHcCCCEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHhCC
Confidence 34445556666655442211111 0 2356677777777777741 124666777777777766655443
No 345
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=23.84 E-value=2.4e+02 Score=25.39 Aligned_cols=22 Identities=5% Similarity=-0.079 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHhcCCCcchh
Q 021569 286 LQPLLNRIKELGENYSKTSTQF 307 (311)
Q Consensus 286 ~~~~~~~l~~iA~~~g~s~~qv 307 (311)
+..++.+.-.+|+++|+++.++
T Consensus 182 ~~~~~~Ea~~l~~~~Gi~~~~~ 203 (296)
T PRK11559 182 NIAAMSEALVLATKAGVNPDLV 203 (296)
T ss_pred HHHHHHHHHHHHHHcCCCHHHH
Confidence 3445567778889999888655
No 346
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=23.78 E-value=5.3e+02 Score=23.93 Aligned_cols=88 Identities=17% Similarity=0.134 Sum_probs=0.0
Q ss_pred ccEEEEeeccCCCCCCCHHHHHHHHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccceEeec-----CCc
Q 021569 127 VEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVS-----NYS 201 (311)
Q Consensus 127 ~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir~iGvS-----n~~ 201 (311)
+.+-|.||. ....+..|.+.+-+.|+..+..++-+..+..|. .-.+++.++++.|++.|..-.+=.. |.+
T Consensus 175 ~~iri~tr~----~~~~p~rit~el~~~L~~~~~~~~~~~h~dh~~-Ei~d~~~~ai~~L~~~Gi~v~~qtvllkgiNDn 249 (321)
T TIGR03821 175 KRLRIHTRL----PVVIPDRITSGLCDLLANSRLQTVLVVHINHAN-EIDAEVADALAKLRNAGITLLNQSVLLRGVNDN 249 (321)
T ss_pred cEEEEecCc----ceeeHHHhhHHHHHHHHhcCCcEEEEeeCCChH-hCcHHHHHHHHHHHHcCCEEEecceeeCCCCCC
Q ss_pred HHHHHHHHHHHHhcCCCe
Q 021569 202 EKRLRNAYEKLKKRGIPL 219 (311)
Q Consensus 202 ~~~l~~~~~~~~~~g~~~ 219 (311)
.+.+.++.+.+...|+.|
T Consensus 250 ~~~l~~L~~~l~~~gv~p 267 (321)
T TIGR03821 250 ADTLAALSERLFDAGVLP 267 (321)
T ss_pred HHHHHHHHHHHHHcCCee
No 347
>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A.
Probab=23.77 E-value=83 Score=24.09 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcC
Q 021569 176 NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRG 216 (311)
Q Consensus 176 ~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g 216 (311)
..+.++.+.+|+++|+++-.=-+.|+.+++.++++.++..+
T Consensus 80 ~~~~l~~l~~l~~~G~l~~~i~~~f~l~~~~~A~~~l~~~~ 120 (127)
T PF13602_consen 80 RAEALEELAELVAEGKLKPPIDRVFPLEEAPEAHERLESGH 120 (127)
T ss_dssp HHHHHHHHHHHHHTTSS---EEEEEEGGGHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHCCCeEEeeccEECHHHHHHHHHHHHhCC
Confidence 45679999999999999866556799999999998876543
No 348
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=23.77 E-value=2.3e+02 Score=21.28 Aligned_cols=34 Identities=15% Similarity=0.269 Sum_probs=23.5
Q ss_pred HHHHHHHHHH---HcCccceEeecCCcHHHHHHHHHH
Q 021569 178 GFIDGLGDAV---EQGLVKAVGVSNYSEKRLRNAYEK 211 (311)
Q Consensus 178 ~~~~~l~~l~---~~G~ir~iGvSn~~~~~l~~~~~~ 211 (311)
..+..|.++. ++-.++.||||.-+.+.+++..+.
T Consensus 43 ~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~ 79 (124)
T PF00578_consen 43 AELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEE 79 (124)
T ss_dssp HHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHH
T ss_pred cchhHHHHHhhhhccceEEeeecccccccchhhhhhh
Confidence 3444455444 345689999999999988877544
No 349
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=23.68 E-value=3.5e+02 Score=23.89 Aligned_cols=76 Identities=18% Similarity=0.193 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHHc-CccceEeecCC-----cHHHHHHHHHHHHhcCCCeeeeeeccCcCcCCcc-----ccchhHHHHH
Q 021569 176 NEGFIDGLGDAVEQ-GLVKAVGVSNY-----SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPE-----ENGVKAACDE 244 (311)
Q Consensus 176 ~~~~~~~l~~l~~~-G~ir~iGvSn~-----~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~~-----~~~l~~~~~~ 244 (311)
.+.+.++++.+++. |++.-+|+.+. ..++|..+++.+++.|++.+.+..-..=-+..+. -+++.+.|++
T Consensus 13 n~~l~~~~~~~k~~~~~lHl~GLlSdGGVHSh~~Hl~al~~~a~~~gv~~V~vH~f~DGRDt~P~S~~~yl~~l~~~l~~ 92 (223)
T PF06415_consen 13 NPVLLEAIEHAKKNGGRLHLMGLLSDGGVHSHIDHLFALIKLAKKQGVKKVYVHAFTDGRDTPPKSALKYLEELEEKLAE 92 (223)
T ss_dssp SHHHHHHHHHHCCTT--EEEEEEESS-SSS--HHHHHHHHHHHHHTT-SEEEEEEEE-SSSS-TTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCeEEEEEEecCCCccccHHHHHHHHHHHHHcCCCEEEEEEecCCCCCCcchHHHHHHHHHHHHHh
Confidence 34455666776654 56777887653 3577888888888888765544333221111111 1147777888
Q ss_pred hCCeEEE
Q 021569 245 LGITLIA 251 (311)
Q Consensus 245 ~gi~v~a 251 (311)
.|++-+|
T Consensus 93 ~~~g~IA 99 (223)
T PF06415_consen 93 IGIGRIA 99 (223)
T ss_dssp HTCTEEE
T ss_pred hCCceEE
Confidence 8876554
No 350
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=23.50 E-value=7.2e+02 Score=24.53 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=10.0
Q ss_pred cHHHHHHHHHHHHhcCCCeee
Q 021569 201 SEKRLRNAYEKLKKRGIPLAS 221 (311)
Q Consensus 201 ~~~~l~~~~~~~~~~g~~~~~ 221 (311)
+.++++++++.++++++.+.+
T Consensus 217 s~e~l~~L~~~a~~~~i~lI~ 237 (496)
T PLN02376 217 DKDTLTNLVRFVTRKNIHLVV 237 (496)
T ss_pred CHHHHHHHHHHHHHcCCEEEE
Confidence 345555555555544443333
No 351
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=23.34 E-value=91 Score=22.78 Aligned_cols=24 Identities=8% Similarity=0.212 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHhcCCCcchhc
Q 021569 285 NLQPLLNRIKELGENYSKTSTQFS 308 (311)
Q Consensus 285 ~~~~~~~~l~~iA~~~g~s~~qva 308 (311)
+..+.+.+|.++|++.|++..+++
T Consensus 49 ~V~~sl~kL~~La~~N~v~feeLc 72 (82)
T PF11020_consen 49 KVMDSLSKLYKLAKENNVSFEELC 72 (82)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHH
Confidence 466777899999999999998875
No 352
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=23.24 E-value=3.1e+02 Score=25.47 Aligned_cols=61 Identities=13% Similarity=0.146 Sum_probs=29.0
Q ss_pred chhHHHHHhCCeEEEc-ccCccccccC-----CCCCCCCCCCCCCCCCchHhHhhHHHHHHHHHHHHHhc
Q 021569 237 GVKAACDELGITLIAY-CPIAQGALTG-----KYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENY 300 (311)
Q Consensus 237 ~l~~~~~~~gi~v~a~-spL~~G~Ltg-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~ 300 (311)
.+++.|+++|+-|+.+ .|..++-... ..... + +.+.|..++.+++...+.++.|.++.+++
T Consensus 67 ~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~~~-~--~~~~R~~~~~~~~~~~~~~~~~~~~~~~~ 133 (319)
T PF01301_consen 67 RFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLLRK-P--DIRLRTNDPPFLEAVERWYRALAKIIKPL 133 (319)
T ss_dssp HHHHHHHHTT-EEEEEEES---TTBGGGG--GGGGGS-T--TS-SSSS-HHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHcCcEEEecccceecccccchhhhhhhhcc-c--cccccccchhHHHHHHHHHHHHHHHHHhh
Confidence 4899999999998865 5555442211 11111 0 12223345555555555555555554443
No 353
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=23.23 E-value=87 Score=31.55 Aligned_cols=31 Identities=19% Similarity=0.332 Sum_probs=26.6
Q ss_pred CchHhHhhHHHHHHHHHHHHHhcCCCcchhc
Q 021569 278 YTAEYLRNLQPLLNRIKELGENYSKTSTQFS 308 (311)
Q Consensus 278 ~~~~~~~~~~~~~~~l~~iA~~~g~s~~qva 308 (311)
|+|..++.....+..|+.+++|||+++..+.
T Consensus 294 ~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~ 324 (557)
T COG0497 294 FDPNRLEEVEERLFALKSLARKYGVTIEDLL 324 (557)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 6777778888889999999999999998763
No 354
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.22 E-value=6.3e+02 Score=23.72 Aligned_cols=91 Identities=7% Similarity=-0.002 Sum_probs=59.5
Q ss_pred eEEecCCCC------------CChHHHHHHHHHHHHcCc----cceEeec--CCcHHHHHHHHHHHHhcCCCeeeeeecc
Q 021569 165 LYQLHWAGI------------WGNEGFIDGLGDAVEQGL----VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (311)
Q Consensus 165 l~~lH~p~~------------~~~~~~~~~l~~l~~~G~----ir~iGvS--n~~~~~l~~~~~~~~~~g~~~~~~Q~~~ 226 (311)
.+-||.++. .+.+++++++.+..++.. |+++=+- |.+.++++++.+.++. ....++=++|
T Consensus 206 aiSL~a~d~e~r~~i~p~~~~~~l~~ll~~l~~~~~~~~~~V~ieyvLI~GvNDs~e~~~~L~~ll~~--~~~~VnLIPy 283 (343)
T PRK14468 206 ALSLHAPDEETRQRIIPTAHRYSIAEIMAAVRHYQAVTGRRVTLEYTMLKGVNDHLWQAELLADLLRG--LVSHVNLIPF 283 (343)
T ss_pred EEEcCCCCHHHHHHhccccccCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCcCCHHHHHHHHHHHhc--CCcEEEEEcC
Confidence 456777764 245788899887766643 3555555 5677788888887664 3456777788
Q ss_pred CcCcCC----cccc---chhHHHHHhCCeEEEcccCcc
Q 021569 227 SLIYRK----PEEN---GVKAACDELGITLIAYCPIAQ 257 (311)
Q Consensus 227 ~~~~~~----~~~~---~l~~~~~~~gi~v~a~spL~~ 257 (311)
|++... +..+ .+.++.+++|+.+......+.
T Consensus 284 np~~~~~~~~ps~e~i~~f~~~L~~~Gi~vtiR~~~g~ 321 (343)
T PRK14468 284 NPWEGSPFQSSPRAQILAFADVLERRGVPVSVRWSRGR 321 (343)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 886531 1111 245567778999988777664
No 355
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=23.05 E-value=3.7e+02 Score=20.99 Aligned_cols=61 Identities=10% Similarity=0.038 Sum_probs=39.4
Q ss_pred CccEEEEeeccCCCCCCCHHHHHHHHHHHHHhhCC--CCcceEEecCCCC--CChHHHHHHHHHHHH
Q 021569 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL--SSVELYQLHWAGI--WGNEGFIDGLGDAVE 188 (311)
Q Consensus 126 R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~rL~~--d~iDl~~lH~p~~--~~~~~~~~~l~~l~~ 188 (311)
|=-+.|+-|++. .-..+..+++.+.+..+.... ...|++++..+.. .+..++.+.|..|.+
T Consensus 45 R~G~~VsKK~~~--~AV~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~~~~~~~l~~~l~~ll~ 109 (120)
T PRK04390 45 RLGLVVGKKTAK--RAVERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFDRATAKQAVAELAQLMA 109 (120)
T ss_pred eEEEEEecccCc--chhhhhHHHHHHHHHHHhccccCCCceEEEEeCCCcccCCHHHHHHHHHHHHH
Confidence 556778888542 135577788888887765432 3569999998864 455566666655544
No 356
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=22.98 E-value=1.4e+02 Score=26.75 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=16.2
Q ss_pred HHHHHHHHhhCCCCcceEEecCCCC
Q 021569 149 AALKDSLFRLGLSSVELYQLHWAGI 173 (311)
Q Consensus 149 ~~~~~SL~rL~~d~iDl~~lH~p~~ 173 (311)
..++..|+-.+ +|||++-+-|-..
T Consensus 25 ~~~~dlLe~ag-~yID~~K~g~Gt~ 48 (244)
T PF02679_consen 25 RYLEDLLESAG-DYIDFLKFGWGTS 48 (244)
T ss_dssp HHHHHHHHHHG-GG-SEEEE-TTGG
T ss_pred HHHHHHHHHhh-hhccEEEecCcee
Confidence 45666777777 7999999988654
No 357
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=22.90 E-value=4.2e+02 Score=27.08 Aligned_cols=95 Identities=13% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhCCCCcce---------EEecCCCCCChHHHHHHHHHHHHcCc-cce---------EeecCCcHHHHHHH
Q 021569 148 LAALKDSLFRLGLSSVEL---------YQLHWAGIWGNEGFIDGLGDAVEQGL-VKA---------VGVSNYSEKRLRNA 208 (311)
Q Consensus 148 ~~~~~~SL~rL~~d~iDl---------~~lH~p~~~~~~~~~~~l~~l~~~G~-ir~---------iGvSn~~~~~l~~~ 208 (311)
...+-..|.++|++.|++ +-....++ |+.|..+++... ++- +|.++|.-+-++..
T Consensus 29 ~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p------~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~ 102 (593)
T PRK14040 29 MLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDP------WERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERF 102 (593)
T ss_pred HHHHHHHHHHcCCCEEEecCCcchhhhccccCCCH------HHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHHH
Q ss_pred HHHHHhcCCCeeeeeeccCcCcCCccccchhHHHHHhCCeEEE
Q 021569 209 YEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (311)
Q Consensus 209 ~~~~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a 251 (311)
++.+..+|+...-+=...|-+..-.. .+++++++|..+.+
T Consensus 103 v~~a~~~Gid~~rifd~lnd~~~~~~---ai~~ak~~G~~~~~ 142 (593)
T PRK14040 103 VERAVKNGMDVFRVFDAMNDPRNLET---ALKAVRKVGAHAQG 142 (593)
T ss_pred HHHHHhcCCCEEEEeeeCCcHHHHHH---HHHHHHHcCCeEEE
No 358
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=22.89 E-value=82 Score=23.74 Aligned_cols=48 Identities=29% Similarity=0.388 Sum_probs=30.1
Q ss_pred ChHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeeee
Q 021569 175 GNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQ 223 (311)
Q Consensus 175 ~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q 223 (311)
+..+..++++.|++.| ++.+=+||-+...-++..+.++..|+++...|
T Consensus 15 ~ipga~e~l~~L~~~g-~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~ 62 (101)
T PF13344_consen 15 PIPGAVEALDALRERG-KPVVFLTNNSSRSREEYAKKLKKLGIPVDEDE 62 (101)
T ss_dssp E-TTHHHHHHHHHHTT-SEEEEEES-SSS-HHHHHHHHHHTTTT--GGG
T ss_pred cCcCHHHHHHHHHHcC-CCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCE
Confidence 4567889999999998 45566888765555555555666777654433
No 359
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=22.89 E-value=4.8e+02 Score=22.21 Aligned_cols=99 Identities=19% Similarity=0.175 Sum_probs=56.5
Q ss_pred HHHHHHHHhhCCCCcceEEecCCCC--CChHHHHHHHHHHHHcCccceEee-cCCcHHHHHHHHHHHHhcCCCeeeeeec
Q 021569 149 AALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGV-SNYSEKRLRNAYEKLKKRGIPLASNQVN 225 (311)
Q Consensus 149 ~~~~~SL~rL~~d~iDl~~lH~p~~--~~~~~~~~~l~~l~~~G~ir~iGv-Sn~~~~~l~~~~~~~~~~g~~~~~~Q~~ 225 (311)
+.++..-+.||+.+ +.+.-+.. .-.++..+.|.+++++| +..+=. .+++..|-...-+.|.+.|+.+
T Consensus 48 e~~~~~A~~lgipl---~~i~~~~~~e~~~~~l~~~l~~~~~~g-~~~vv~G~i~sd~~~~~~e~~~~~~gl~~------ 117 (194)
T cd01994 48 ELLELQAEAMGIPL---IRIEISGEEEDEVEDLKELLRKLKEEG-VDAVVFGAILSEYQRTRVERVCERLGLEP------ 117 (194)
T ss_pred HHHHHHHHHcCCcE---EEEeCCCCchHHHHHHHHHHHHHHHcC-CCEEEECccccHHHHHHHHHHHHHcCCEE------
Confidence 34455556777653 33332221 11345667777777774 543322 2455556666666677666532
Q ss_pred cCcCcCCccccchhHHHHHhCCeEEEcccCccc
Q 021569 226 YSLIYRKPEENGVKAACDELGITLIAYCPIAQG 258 (311)
Q Consensus 226 ~~~~~~~~~~~~l~~~~~~~gi~v~a~spL~~G 258 (311)
+.|+++...+ ++++..-+.|+.++.-+.-+.|
T Consensus 118 ~~PLW~~~~~-~ll~e~~~~g~~~~iv~v~~~~ 149 (194)
T cd01994 118 LAPLWGRDQE-ELLREMIEAGFKAIIIKVAAEG 149 (194)
T ss_pred EecccCCCHH-HHHHHHHHcCCeEEEEEeccCC
Confidence 3466665443 5888888999887655554544
No 360
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=22.73 E-value=4.4e+02 Score=27.23 Aligned_cols=47 Identities=17% Similarity=0.063 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccc
Q 021569 145 QSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK 193 (311)
Q Consensus 145 ~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir 193 (311)
+...+.+.+.+++||++ .|.|.-. -++.-.+.+.+.+.+|.++|.|-
T Consensus 71 ~~~~~~~~~~~~~l~i~-~d~f~rt-t~~~h~~~v~~~~~~L~~~G~iy 117 (673)
T PRK00133 71 ARYHAEHKRDFAGFGIS-FDNYGST-HSEENRELAQEIYLKLKENGYIY 117 (673)
T ss_pred HHHHHHHHHHHHHhCCC-CCCCccC-CcHHHHHHHHHHHHHHHHCCCEE
Confidence 44677788999999997 4743211 11112467788899999999874
No 361
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=22.67 E-value=3.2e+02 Score=26.79 Aligned_cols=68 Identities=13% Similarity=0.043 Sum_probs=43.8
Q ss_pred CCHHHHHHHHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcC
Q 021569 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRG 216 (311)
Q Consensus 142 ~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g 216 (311)
.+.+...+.+.+.|+.||+++ |-++... .-.+..-+.+++|+++|++ |... .+.+++++..+.....|
T Consensus 48 Rs~~~~~~~I~e~L~wLGI~~-De~y~QS---er~~~y~~~~e~L~e~G~A-Y~C~--Ct~eel~~~r~~~~~~~ 115 (445)
T PRK12558 48 RSKQEYADAIAEDLKWLGINW-DRTFRQS---DRFDRYDEAAEKLKAAGRL-YPCY--ETPEELELKRKIQLSRG 115 (445)
T ss_pred cchHHHHHHHHHHHHHcCCCC-CccccHH---HHHHHHHHHHHHHHHCCCE-EEec--CchHHHHHHHHHHHhCC
Confidence 345778899999999999974 6322111 1234557788999999986 4433 45677776654433334
No 362
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=22.63 E-value=3.3e+02 Score=26.14 Aligned_cols=61 Identities=16% Similarity=0.209 Sum_probs=39.1
Q ss_pred hHHHHHHHHHhccCCCCCccEEEEeeccC--------CCCCCCH----HHHHHHHHHHHHhhCCCCcceEEecCCCC
Q 021569 109 SETLLGRFIKERKQRDPEVEVTVATKFAA--------LPWRLGR----QSVLAALKDSLFRLGLSSVELYQLHWAGI 173 (311)
Q Consensus 109 sE~~lG~al~~~~~~~~R~~~~I~tK~~~--------~~~~~~~----~~i~~~~~~SL~rL~~d~iDl~~lH~p~~ 173 (311)
++..|.+.++..+ ..=+||-||+-. .|..++. +.|++.+.+.|++-|+....+|++-..+.
T Consensus 129 ndv~La~~i~~~g----K~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl 201 (376)
T PF05049_consen 129 NDVQLAKEIQRMG----KKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDL 201 (376)
T ss_dssp HHHHHHHHHHHTT-----EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTT
T ss_pred hhHHHHHHHHHcC----CcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCc
Confidence 3778889998875 356789999853 1223343 46788899999999999999999987664
No 363
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=22.62 E-value=3.5e+02 Score=22.73 Aligned_cols=63 Identities=13% Similarity=0.090 Sum_probs=38.5
Q ss_pred CCcceEEecCCCCCChHHHHHHHHHH-HHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeeeeeccC
Q 021569 161 SSVELYQLHWAGIWGNEGFIDGLGDA-VEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (311)
Q Consensus 161 d~iDl~~lH~p~~~~~~~~~~~l~~l-~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~ 227 (311)
+.+|.++++... ....++++.+.++ +..|++- +...+.+++.++...+++.|..+.+.|+..+
T Consensus 110 ~~~D~V~~~~~~-~~~~~~l~~~~~~LkpgG~lv---~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 173 (198)
T PRK00377 110 EKFDRIFIGGGS-EKLKEIISASWEIIKKGGRIV---IDAILLETVNNALSALENIGFNLEITEVIIA 173 (198)
T ss_pred CCCCEEEECCCc-ccHHHHHHHHHHHcCCCcEEE---EEeecHHHHHHHHHHHHHcCCCeEEEEEehh
Confidence 457888875422 2345566555444 3445442 3445667788888878777777777777654
No 364
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=22.62 E-value=6.2e+02 Score=23.46 Aligned_cols=13 Identities=23% Similarity=0.279 Sum_probs=6.0
Q ss_pred hhHHHHHhCCeEE
Q 021569 238 VKAACDELGITLI 250 (311)
Q Consensus 238 l~~~~~~~gi~v~ 250 (311)
+++++++.|+..+
T Consensus 165 ~~~~~~~lg~~~i 177 (358)
T TIGR02109 165 IIELAIELGADRV 177 (358)
T ss_pred HHHHHHHcCCCEE
Confidence 3445555554433
No 365
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=22.61 E-value=5.1e+02 Score=26.57 Aligned_cols=48 Identities=15% Similarity=0.102 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccce
Q 021569 145 QSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKA 194 (311)
Q Consensus 145 ~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir~ 194 (311)
+.+.+.+.+.+++||+++ |.|. +--+..-.+.+.+.+.+|.+.|.|..
T Consensus 73 d~~~~~fk~~l~~lgI~~-D~f~-rTt~~~h~~~v~~~~~~L~~kG~IY~ 120 (648)
T PRK12267 73 DEISAGFKELWKKLDISY-DKFI-RTTDERHKKVVQKIFEKLYEQGDIYK 120 (648)
T ss_pred HHHHHHHHHHHHHcCCCC-CCCe-eCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 457788999999999964 6432 21121224566788899999999863
No 366
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=22.51 E-value=5.4e+02 Score=22.68 Aligned_cols=161 Identities=19% Similarity=0.206 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCCCCccEEEEeeccCC-CCCCCHHHHHHHHHH
Q 021569 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAAL-PWRLGRQSVLAALKD 153 (311)
Q Consensus 75 ~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~-~~~~~~~~i~~~~~~ 153 (311)
.+....+...+..++.+....---| .+ -+-| +.+.-.. .+.++.|.+... .-..+.+.+...+.+
T Consensus 13 ~Dv~p~l~~~l~~~v~i~e~G~LDg--ls------~~eI-~~~aP~~-----ge~vLvTrL~DG~~V~ls~~~v~~~lq~ 78 (221)
T PF07302_consen 13 TDVTPELTEILGEGVEIVEAGALDG--LS------REEI-AALAPEP-----GEYVLVTRLRDGTQVVLSKKKVEPRLQA 78 (221)
T ss_pred chhHHHHHHHcCCCceEEEeccCCC--CC------HHHH-HHhCCCC-----CCceeEEEeCCCCEEEEEHHHHHHHHHH
Confidence 4566678888887877665443333 33 3333 5554433 567888887421 113678999999999
Q ss_pred HHHhhCCCCcceEEecCCCCC----------ChHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeeee
Q 021569 154 SLFRLGLSSVELYQLHWAGIW----------GNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQ 223 (311)
Q Consensus 154 SL~rL~~d~iDl~~lH~p~~~----------~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q 223 (311)
-+.+|.-+-.|+.++-.-..+ .+..++..+-...-.| +.+||=.=.++|+....+.....+.++ .=
T Consensus 79 ~i~~le~~G~d~illlCTG~F~~l~~~~~lleP~ril~~lV~al~~~--~~vGVivP~~eQ~~~~~~kW~~l~~~~--~~ 154 (221)
T PF07302_consen 79 CIAQLEAQGYDVILLLCTGEFPGLTARNPLLEPDRILPPLVAALVGG--HQVGVIVPLPEQIAQQAEKWQPLGNPV--VV 154 (221)
T ss_pred HHHHHHHCCCCEEEEeccCCCCCCCCCcceeehHHhHHHHHHHhcCC--CeEEEEecCHHHHHHHHHHHHhcCCCe--EE
Confidence 998997777788777532221 1345566655555555 889998888999987766554433332 23
Q ss_pred eccCcCcCCccccchhHHHHH---hCCeEEEcccC
Q 021569 224 VNYSLIYRKPEENGVKAACDE---LGITLIAYCPI 255 (311)
Q Consensus 224 ~~~~~~~~~~~~~~l~~~~~~---~gi~v~a~spL 255 (311)
.-.||+....+ ++.+.+++ +|..++..--+
T Consensus 155 a~asPy~~~~~--~l~~Aa~~L~~~gadlIvLDCm 187 (221)
T PF07302_consen 155 AAASPYEGDEE--ELAAAARELAEQGADLIVLDCM 187 (221)
T ss_pred EEeCCCCCCHH--HHHHHHHHHHhcCCCEEEEECC
Confidence 35566644332 46665554 46777654333
No 367
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=22.47 E-value=75 Score=25.36 Aligned_cols=42 Identities=21% Similarity=0.196 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHHHhc
Q 021569 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKER 120 (311)
Q Consensus 73 ~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~ 120 (311)
..+++.+++..+++.|-+.| .+|+|+| .-.++++..++.+..
T Consensus 20 ~i~~aa~~i~~~~~~gg~i~----~~G~G~S--~~~a~~~~~~~~~~~ 61 (138)
T PF13580_consen 20 AIEKAADLIAEALRNGGRIF----VCGNGHS--AAIASHFAADLGGLF 61 (138)
T ss_dssp HHHHHHHHHHHHHHTT--EE----EEESTHH--HHHHHHHHHHHHCHS
T ss_pred HHHHHHHHHHHHHHCCCEEE----EEcCchh--hhHHHHHHHHHhcCc
Confidence 34678889999999999988 6788876 112456666665443
No 368
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=22.36 E-value=5.6e+02 Score=24.39 Aligned_cols=85 Identities=9% Similarity=-0.023 Sum_probs=53.8
Q ss_pred eEEecCCCCC-ChHHHHHHHHHHHHc------CccceEeecCCcHHHHHHHHHHHHhcCCCeeeeeeccCcCcCCccccc
Q 021569 165 LYQLHWAGIW-GNEGFIDGLGDAVEQ------GLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENG 237 (311)
Q Consensus 165 l~~lH~p~~~-~~~~~~~~l~~l~~~------G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~~~~~ 237 (311)
++++-.|-+. +.++-++.+.+|.+. +.=-..|-|.++.+.+.++++. --.+++|+..+-.---.+-..
T Consensus 229 ~~~iEqP~~~~d~~~~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~-----~a~div~~kl~k~GGIt~a~k 303 (369)
T cd03314 229 PLRIEGPMDAGSREAQIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADA-----GAAHMVQIKTPDLGGIDNTID 303 (369)
T ss_pred cEEEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHh-----CCCCEEEecchhcCCHHHHHH
Confidence 3566665431 112357778888776 3334677888888988888654 235677776554221111225
Q ss_pred hhHHHHHhCCeEEEccc
Q 021569 238 VKAACDELGITLIAYCP 254 (311)
Q Consensus 238 l~~~~~~~gi~v~a~sp 254 (311)
+.++|+.+||.++..+.
T Consensus 304 ia~lA~a~Gi~~~~h~~ 320 (369)
T cd03314 304 AVLYCKEHGVGAYLGGS 320 (369)
T ss_pred HHHHHHHcCCcEEEeCC
Confidence 88999999999998653
No 369
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=22.12 E-value=1.8e+02 Score=27.47 Aligned_cols=20 Identities=30% Similarity=0.335 Sum_probs=10.4
Q ss_pred CCcHHHHHHHHHHHHhcCCC
Q 021569 199 NYSEKRLRNAYEKLKKRGIP 218 (311)
Q Consensus 199 n~~~~~l~~~~~~~~~~g~~ 218 (311)
||+.++++++.+.+...|.+
T Consensus 45 nfs~~~l~e~i~~ah~~gkk 64 (347)
T COG0826 45 NFSVEDLAEAVELAHSAGKK 64 (347)
T ss_pred cCCHHHHHHHHHHHHHcCCe
Confidence 45555555555555555443
No 370
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=22.12 E-value=4.8e+02 Score=22.85 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHcCCCeEEcCCCC
Q 021569 75 KAAKAAFDTSLDNGITFFDTAEVY 98 (311)
Q Consensus 75 ~~~~~~l~~Al~~Gi~~~DTA~~Y 98 (311)
++..++.+.++++|..|+=|+.-|
T Consensus 136 e~i~~a~~~~~~agadfIKTsTG~ 159 (221)
T PRK00507 136 EEKVKACEIAKEAGADFVKTSTGF 159 (221)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCCC
Confidence 334444444555555555544444
No 371
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=22.05 E-value=5.3e+02 Score=22.47 Aligned_cols=23 Identities=4% Similarity=0.082 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHcCCCeEEcC
Q 021569 73 KMKAAKAAFDTSLDNGITFFDTA 95 (311)
Q Consensus 73 ~~~~~~~~l~~Al~~Gi~~~DTA 95 (311)
+.++..++++...+.|+..|+..
T Consensus 17 s~e~~~~i~~~L~~~GV~~IEvg 39 (265)
T cd03174 17 STEDKLEIAEALDEAGVDSIEVG 39 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEec
Confidence 45888999999999999999865
No 372
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=21.81 E-value=5e+02 Score=24.39 Aligned_cols=28 Identities=14% Similarity=0.170 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCcceEEec
Q 021569 141 RLGRQSVLAALKDSLFRLGLSSVELYQLH 169 (311)
Q Consensus 141 ~~~~~~i~~~~~~SL~rL~~d~iDl~~lH 169 (311)
..+.+.+.+.++..+ +|+.++|.+|.+.
T Consensus 162 gqt~e~~~~~l~~~~-~l~~~~is~y~l~ 189 (374)
T PRK05799 162 NQTLEDWKETLEKVV-ELNPEHISCYSLI 189 (374)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEEeccE
Confidence 467888888877775 4889999888765
No 373
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=21.80 E-value=6.5e+02 Score=23.39 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=18.6
Q ss_pred chhHHHHHhCCeEEEcccCccccc
Q 021569 237 GVKAACDELGITLIAYCPIAQGAL 260 (311)
Q Consensus 237 ~l~~~~~~~gi~v~a~spL~~G~L 260 (311)
+-++.+++.||.+..-++|..|..
T Consensus 241 ~ai~~L~~aGi~v~~qtvLl~gvn 264 (331)
T TIGR00238 241 EAMKKLRTVNVTLLNQSVLLRGVN 264 (331)
T ss_pred HHHHHHHHcCCEEEeecceECCcC
Confidence 356667888999998888888753
No 374
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=21.77 E-value=4.1e+02 Score=25.10 Aligned_cols=94 Identities=13% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCc-cceEeecCCcHHHHHHHHHHHHhcCCCeeeeeecc
Q 021569 148 LAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGL-VKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (311)
Q Consensus 148 ~~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~-ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~~ 226 (311)
+..+-+.|.++|+++|++- +| ...+.-++.+..+.+.++ .+..+++..+.+.++.+.+. |.+...+=+..
T Consensus 25 k~~ia~~L~~~Gv~~IEvG---~p--~~~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~----g~~~i~i~~~~ 95 (365)
T TIGR02660 25 KLAIARALDEAGVDELEVG---IP--AMGEEERAVIRAIVALGLPARLMAWCRARDADIEAAARC----GVDAVHISIPV 95 (365)
T ss_pred HHHHHHHHHHcCCCEEEEe---CC--CCCHHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcC----CcCEEEEEEcc
Q ss_pred CcCcCCcccc-----------chhHHHHHhCCeEE
Q 021569 227 SLIYRKPEEN-----------GVKAACDELGITLI 250 (311)
Q Consensus 227 ~~~~~~~~~~-----------~l~~~~~~~gi~v~ 250 (311)
|..+.....+ +.+++++++|+.+.
T Consensus 96 Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~ 130 (365)
T TIGR02660 96 SDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVS 130 (365)
T ss_pred CHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEE
No 375
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=21.76 E-value=4.9e+02 Score=22.73 Aligned_cols=52 Identities=17% Similarity=0.260 Sum_probs=34.2
Q ss_pred chhHHHHHhCCeEEEcccCccccccCCCCCCCCCCCCCCCCCchHhHhhHHHHHHHHHHHHHhcCCCc
Q 021569 237 GVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTS 304 (311)
Q Consensus 237 ~l~~~~~~~gi~v~a~spL~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~ 304 (311)
++.+.++++|+.+...+|+...++.. .+.......+.+....++|++.|+..
T Consensus 49 ~l~~~l~~~gl~i~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~i~~a~~lg~~~ 100 (274)
T COG1082 49 ELKELLADYGLEITSLAPFSNNLLSP----------------DEEEREEALEELKRAIELAKELGAKV 100 (274)
T ss_pred HHHHHHHHcCcEEEeecccCCCcCCC----------------chhhHHHHHHHHHHHHHHHHHcCCCe
Confidence 69999999999999999988653321 11111233444445778888888543
No 376
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=21.73 E-value=2.1e+02 Score=24.46 Aligned_cols=36 Identities=19% Similarity=0.095 Sum_probs=27.0
Q ss_pred ChHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHH
Q 021569 175 GNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEK 211 (311)
Q Consensus 175 ~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~ 211 (311)
+..++.+.|+.|++.|.--+| +||.....++..++.
T Consensus 93 ~~~g~~~~l~~l~~~g~~~~i-~S~~~~~~~~~~l~~ 128 (222)
T PRK10826 93 LLPGVREALALCKAQGLKIGL-ASASPLHMLEAVLTM 128 (222)
T ss_pred CCCCHHHHHHHHHHCCCeEEE-EeCCcHHHHHHHHHh
Confidence 345688888999999966666 888887777776554
No 377
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=21.72 E-value=1.8e+02 Score=24.82 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=26.1
Q ss_pred CcceEEecCCCCCChHHHHHHHHHHHHcCccceEeecCCcHHHH
Q 021569 162 SVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRL 205 (311)
Q Consensus 162 ~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l 205 (311)
.+|.++||..++ .+.++.+.+......++.||++.....++
T Consensus 73 ~~d~Vqlhg~e~---~~~~~~l~~~~~~~~i~~i~~~~~~~~~~ 113 (203)
T cd00405 73 GLDVVQLHGDES---PEYCAQLRARLGLPVIKAIRVKDEEDLEK 113 (203)
T ss_pred CCCEEEECCCCC---HHHHHHHHhhcCCcEEEEEecCChhhHHH
Confidence 478899998652 22334443333346789999998765444
No 378
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=21.69 E-value=3e+02 Score=25.08 Aligned_cols=40 Identities=15% Similarity=0.082 Sum_probs=27.8
Q ss_pred HHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCee
Q 021569 181 DGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (311)
Q Consensus 181 ~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~ 220 (311)
.+|+-.++.|.--.+=.=+.+.++++++.++++..|+++.
T Consensus 149 ~a~elA~dvdc~vqLHtes~~~~~~~~i~~~ak~~G~~~~ 188 (285)
T COG1831 149 YAMELAKDVDCAVQLHTESLDEETYEEIAEMAKEAGIKPY 188 (285)
T ss_pred HHHHHhhcCCCcEEEecCCCChHHHHHHHHHHHHhCCCcc
Confidence 3566666667666666667777888888888887777443
No 379
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=21.69 E-value=1.8e+02 Score=22.48 Aligned_cols=25 Identities=8% Similarity=0.074 Sum_probs=12.7
Q ss_pred HHHHHHHHhhCCCCcceEEecCCCC
Q 021569 149 AALKDSLFRLGLSSVELYQLHWAGI 173 (311)
Q Consensus 149 ~~~~~SL~rL~~d~iDl~~lH~p~~ 173 (311)
..+++.|+.+....+|.+++..++.
T Consensus 52 ~~~~~ll~~~~~~~~d~ivv~~~~R 76 (137)
T cd00338 52 PGLQRLLADVKAGKIDVVLVEKLDR 76 (137)
T ss_pred HHHHHHHHHHHcCCCCEEEEEecch
Confidence 3344444444445556666655554
No 380
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=21.67 E-value=1e+02 Score=23.92 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHcCCCeEEcCCCCCC
Q 021569 75 KAAKAAFDTSLDNGITFFDTAEVYGS 100 (311)
Q Consensus 75 ~~~~~~l~~Al~~Gi~~~DTA~~Yg~ 100 (311)
+.+.++...+++.|++.||.+..|-.
T Consensus 77 ~~~~~~~~~~~~~g~~ViD~s~~~R~ 102 (121)
T PF01118_consen 77 GASKELAPKLLKAGIKVIDLSGDFRL 102 (121)
T ss_dssp HHHHHHHHHHHHTTSEEEESSSTTTT
T ss_pred hHHHHHHHHHhhCCcEEEeCCHHHhC
Confidence 66788899999999999999998844
No 381
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=21.65 E-value=5.3e+02 Score=23.83 Aligned_cols=14 Identities=29% Similarity=0.235 Sum_probs=7.1
Q ss_pred HHHHHHHHcCccce
Q 021569 181 DGLGDAVEQGLVKA 194 (311)
Q Consensus 181 ~~l~~l~~~G~ir~ 194 (311)
+.+++|++.|.-+.
T Consensus 144 e~l~~Lk~aG~~~~ 157 (340)
T TIGR03699 144 EVLERLKEAGLDSI 157 (340)
T ss_pred HHHHHHHHcCCCcC
Confidence 44555555555443
No 382
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.57 E-value=6.5e+02 Score=23.50 Aligned_cols=80 Identities=15% Similarity=0.083 Sum_probs=52.5
Q ss_pred ChHHHHHHHHHHHHc-Cc---cceEeec--CCcHHHHHHHHHHHHhcCCCeeeeeeccCcCcCC---cccc---chhHHH
Q 021569 175 GNEGFIDGLGDAVEQ-GL---VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK---PEEN---GVKAAC 242 (311)
Q Consensus 175 ~~~~~~~~l~~l~~~-G~---ir~iGvS--n~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~---~~~~---~l~~~~ 242 (311)
+.+++++++.++.+. +. ++++=+. |.+.++++++.+.++. .+..++-++||++... +..+ .+.+..
T Consensus 233 ~l~~Il~~l~~~~~~~~~~v~i~yvlI~g~NDs~ed~~~La~llk~--~~~~VnLIpynp~~~~~~~ps~e~l~~f~~~l 310 (343)
T PRK14469 233 SIEEIINAVKIYQKKTGNRVTIEYILIKGFNDEIEDAKKLAELLKG--LKVFVNLIPVNPTVPGLEKPSRERIERFKEIL 310 (343)
T ss_pred CHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhc--cCcEEEEEecCCCCccCCCCCHHHHHHHHHHH
Confidence 467888988877765 32 4454444 6677888888777653 3456777899986532 1111 356677
Q ss_pred HHhCCeEEEcccCc
Q 021569 243 DELGITLIAYCPIA 256 (311)
Q Consensus 243 ~~~gi~v~a~spL~ 256 (311)
+++|+.+......+
T Consensus 311 ~~~gi~vtvr~~~g 324 (343)
T PRK14469 311 LKNGIEAEIRREKG 324 (343)
T ss_pred HHCCCeEEEeCCCC
Confidence 78899998876554
No 383
>PRK09061 D-glutamate deacylase; Validated
Probab=21.53 E-value=7.5e+02 Score=24.54 Aligned_cols=105 Identities=13% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccceEeecCCc-------HHHHHHHHHHHHhcCC
Q 021569 145 QSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYS-------EKRLRNAYEKLKKRGI 217 (311)
Q Consensus 145 ~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~-------~~~l~~~~~~~~~~g~ 217 (311)
+.+.+.+++.|+. |..-+-...-+.|.. +.++....++.+.+-|..-.+=+-+.. .+.++++++.++..|.
T Consensus 169 ~~m~~ll~~al~~-Ga~gis~~~~y~p~~-~~~eL~~l~~~A~~~g~~v~~H~e~~~~~~~~~e~~av~~~i~lA~~~G~ 246 (509)
T PRK09061 169 AEILELLEQGLDE-GALGIGIGAGYAPGT-GHKEYLELARLAARAGVPTYTHVRYLSNVDPRSSVDAYQELIAAAAETGA 246 (509)
T ss_pred HHHHHHHHHHHHC-CCCEEecCCccCCCC-CHHHHHHHHHHHHHcCCEEEEEecCcccCCchhHHHHHHHHHHHHHHhCC
Q ss_pred CeeeeeeccCcCcCCccccchhHHHHHhCCeEEE
Q 021569 218 PLASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (311)
Q Consensus 218 ~~~~~Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a 251 (311)
++.+..+...-.....+..++++.+++.|+.|.+
T Consensus 247 rv~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~ 280 (509)
T PRK09061 247 HMHICHVNSTSLRDIDRCLALVEKAQAQGLDVTT 280 (509)
T ss_pred CEEEEeeccCCcccHHHHHHHHHHHHHcCCcEEE
No 384
>TIGR02629 L_rham_iso_rhiz L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype. Members of this family are isomerases in the pathway of L-rhamnose catabolism as found in Pseudomonas stutzeri and in a number of the Rhizobiales. This family differs from the L-rhamnose isomerases of Escherichia coli (see TIGR01748). This enzyme catalyzes the isomerization step in rhamnose catabolism. Genetic evidence in Rhizobium leguminosarum bv. trifolii suggests phosphorylation occurs first, then isomerization of the the phosphorylated sugar, but characterization of the recombinant enzyme from Pseudomonas stutzeri does show L-rhamnose isomerase activity. The name given is deliberately vague because the relative order of phosphorylation and isomerization is unclear.
Probab=21.50 E-value=3.4e+02 Score=26.31 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=21.5
Q ss_pred eeccCcCcCCccccchhHHHHHhCCeEEEcccC
Q 021569 223 QVNYSLIYRKPEENGVKAACDELGITLIAYCPI 255 (311)
Q Consensus 223 Q~~~~~~~~~~~~~~l~~~~~~~gi~v~a~spL 255 (311)
.+.+|..+......++-++++++|+++-++.|-
T Consensus 88 ~v~LH~~wd~vD~~elk~~A~e~GL~lda~Npn 120 (412)
T TIGR02629 88 NVSLHIPWDKADPKELKARGSALGLGFDAMNSN 120 (412)
T ss_pred CccccCCCCcCCHHHHHHHHHHcCCccceeccc
Confidence 344444333333446889999999999876664
No 385
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=21.50 E-value=3.7e+02 Score=24.22 Aligned_cols=47 Identities=17% Similarity=0.063 Sum_probs=33.6
Q ss_pred CCCcceEEecCCCC----CChHHHHHHHHHHHHcCccceEeecCCcHHHHHHH
Q 021569 160 LSSVELYQLHWAGI----WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNA 208 (311)
Q Consensus 160 ~d~iDl~~lH~p~~----~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~ 208 (311)
...-|+++|.-|-. ....++++-|.+|+++| +.|=+..++...+.+.
T Consensus 155 ~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg--~tIl~vtHDL~~v~~~ 205 (254)
T COG1121 155 AQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEG--KTVLMVTHDLGLVMAY 205 (254)
T ss_pred ccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCC--CEEEEEeCCcHHhHhh
Confidence 35678999987743 22457889999999998 4566677776665554
No 386
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=21.37 E-value=6.8e+02 Score=23.39 Aligned_cols=152 Identities=13% Similarity=0.036 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHHH
Q 021569 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (311)
Q Consensus 74 ~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~~ 153 (311)
.++..+-...+++.|++.|=.-- |... ....+.+ +++++.-. +++-|.-=.. ..++.+...+-+ +
T Consensus 139 ~e~~~~~a~~~~~~Gf~~~Kikv--g~~~----~~d~~~v-~~vRe~~G----~~~~l~vDaN---~~~~~~~A~~~~-~ 203 (352)
T cd03328 139 DDRLREQLSGWVAQGIPRVKMKI--GRDP----RRDPDRV-AAARRAIG----PDAELFVDAN---GAYSRKQALALA-R 203 (352)
T ss_pred HHHHHHHHHHHHHCCCCEEEeec--CCCH----HHHHHHH-HHHHHHcC----CCCeEEEECC---CCCCHHHHHHHH-H
Confidence 35555566677789999775321 2110 0002233 33443321 2333332221 234554433222 2
Q ss_pred HHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHc--Ccc-ceEeecCCcHHHHHHHHHHHHhcCCCeeeeeeccCcCc
Q 021569 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ--GLV-KAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIY 230 (311)
Q Consensus 154 SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~--G~i-r~iGvSn~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~ 230 (311)
.|+. +++.++-.|- + .+-++.+.+|.+. -.| -..|=|-++..++.++++. --++++|....-.-
T Consensus 204 ~l~~-----~~~~~~EeP~--~-~~d~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~-----~a~div~~d~~~~G 270 (352)
T cd03328 204 AFAD-----EGVTWFEEPV--S-SDDLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEA-----HAVDVLQADVTRCG 270 (352)
T ss_pred HHHH-----hCcchhhCCC--C-hhhHHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHc-----CCCCEEecCccccC
Confidence 3333 3555555553 2 2347788888887 333 3678888899998888653 23677777655432
Q ss_pred CCccccchhHHHHHhCCeEEEcc
Q 021569 231 RKPEENGVKAACDELGITLIAYC 253 (311)
Q Consensus 231 ~~~~~~~l~~~~~~~gi~v~a~s 253 (311)
--.+-..+.+.|+.+|+.++.++
T Consensus 271 Git~~~~ia~~A~a~gi~~~~h~ 293 (352)
T cd03328 271 GVTGFLQAAALAAAHHVDLSAHC 293 (352)
T ss_pred CHHHHHHHHHHHHHcCCeeccCc
Confidence 11112258899999999998764
No 387
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=21.33 E-value=2.5e+02 Score=22.73 Aligned_cols=101 Identities=18% Similarity=0.132 Sum_probs=50.3
Q ss_pred cceEeecCCcHHHHHH-HHHHHHhcCCCeeeeeeccCcCcCC------c-----cccchhHHH--HHhCCeEEEcccCcc
Q 021569 192 VKAVGVSNYSEKRLRN-AYEKLKKRGIPLASNQVNYSLIYRK------P-----EENGVKAAC--DELGITLIAYCPIAQ 257 (311)
Q Consensus 192 ir~iGvSn~~~~~l~~-~~~~~~~~g~~~~~~Q~~~~~~~~~------~-----~~~~l~~~~--~~~gi~v~a~spL~~ 257 (311)
|...|+|..+..++.. +............++++--|=+... . .-..+++.+ +..+..|+..+|+..
T Consensus 36 v~n~g~~G~t~~~~~~~~~~~~~~~~~d~v~l~~G~ND~~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~ii~~~p~~~ 115 (191)
T cd01834 36 FRNLGWSGDTVSDLAARRDRDVLPAKPDVVSIMFGINDSFRGFDDPVGLEKFKTNLRRLIDRLKNKESAPRIVLVSPIAY 115 (191)
T ss_pred EEEcccCccchhhhhhhhhcccccCCCCEEEEEeecchHhhcccccccHHHHHHHHHHHHHHHHcccCCCcEEEECCccc
Confidence 3456777776666542 2111111112344555554433322 0 112477777 456788887777643
Q ss_pred ccccCCCCCCCCCCCCCCCCCchHhHhhHHHHHHHHHHHHHhcCCCc
Q 021569 258 GALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTS 304 (311)
Q Consensus 258 G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~ 304 (311)
.-.. .+ ...............+.++++|+++++..
T Consensus 116 ~~~~-------~~-----~~~~~~~~~~~~~~n~~l~~~a~~~~~~~ 150 (191)
T cd01834 116 EANE-------DP-----LPDGAEYNANLAAYADAVRELAAENGVAF 150 (191)
T ss_pred CCCC-------CC-----CCChHHHHHHHHHHHHHHHHHHHHcCCeE
Confidence 2100 00 00112223344555668899999988654
No 388
>KOG1321 consensus Protoheme ferro-lyase (ferrochelatase) [Coenzyme transport and metabolism]
Probab=21.28 E-value=1.8e+02 Score=27.22 Aligned_cols=64 Identities=23% Similarity=0.419 Sum_probs=45.1
Q ss_pred HHHHHHHHHHcCccceEeecCCc-------HHHHHHHHHHHHhcCCCeeeeeeccCcCcCCccccchhHHHHHh
Q 021569 179 FIDGLGDAVEQGLVKAVGVSNYS-------EKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDEL 245 (311)
Q Consensus 179 ~~~~l~~l~~~G~ir~iGvSn~~-------~~~l~~~~~~~~~~g~~~~~~Q~~~~~~~~~~~~~~l~~~~~~~ 245 (311)
+-+++++++++|.-|.+-+|-|. -..|..+....++.+...+ +.++++++.+-.++++....++
T Consensus 142 TEea~~qikkd~v~r~VafsqYPQyS~sTsGSSln~l~r~~r~~~~~~~---~~wsiIdrW~t~~glIkafA~~ 212 (395)
T KOG1321|consen 142 TEEALEQIKKDGVTRAVAFSQYPQYSCSTSGSSLNELWRQFREDGYERD---IKWSIIDRWPTREGLIKAFAEN 212 (395)
T ss_pred cHHHHHHHHhcCceeEEeeccCCceeeecCcccHHHHHHHHHhcCcccC---CceEeeccccccchHHHHHHHH
Confidence 45778889999999999998764 2456666666766665444 4677888877666666655443
No 389
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.23 E-value=2.1e+02 Score=19.23 Aligned_cols=37 Identities=24% Similarity=0.389 Sum_probs=26.2
Q ss_pred EeecCCcHHHHHHHHHHHHhcCCC--eeeeeeccCcCcC
Q 021569 195 VGVSNYSEKRLRNAYEKLKKRGIP--LASNQVNYSLIYR 231 (311)
Q Consensus 195 iGvSn~~~~~l~~~~~~~~~~g~~--~~~~Q~~~~~~~~ 231 (311)
+=+|+|+.+++..++...++.|++ .-++-.+.|.-+.
T Consensus 4 ll~~g~~~~el~~~l~~~r~~~~~~~~kAvlT~tN~~Wt 42 (58)
T PF12646_consen 4 LLFSGFSGEELDKFLDALRKAGIPIPLKAVLTPTNINWT 42 (58)
T ss_pred EEECCCCHHHHHHHHHHHHHcCCCcceEEEECCCcccCc
Confidence 346888889999999988888763 3445566665543
No 390
>COG1560 HtrB Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=21.22 E-value=6.7e+02 Score=23.25 Aligned_cols=86 Identities=19% Similarity=0.134 Sum_probs=55.9
Q ss_pred HHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHHHHHH
Q 021569 77 AKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLF 156 (311)
Q Consensus 77 ~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~ 156 (311)
-.+.+..+++.|-.+|=...++|+ =++.+.+|..+. -.+...-| ......+...+.+..+
T Consensus 111 g~e~l~e~l~~~~gvIl~~~H~gn---------~E~~~~~l~~~~-----~~~~~~yr------p~~np~ld~~i~~~R~ 170 (308)
T COG1560 111 GLEHLEEALANGRGVILVTPHFGN---------WELGGRALAQQG-----PKVTAMYR------PPKNPLLDWLITRGRE 170 (308)
T ss_pred CHHHHHHHHHcCCCEEEEecCcch---------HHHHHHHHHHhC-----CCeeEEec------CCCCHHHHHHHHHHHH
Confidence 355778888888888888888888 678888887654 12212211 2445678888888999
Q ss_pred hhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCcc
Q 021569 157 RLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLV 192 (311)
Q Consensus 157 rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~i 192 (311)
+.|...++- ..+-+..|-+..++|.+
T Consensus 171 r~~~~~~~~----------~~~~ir~li~~Lk~G~~ 196 (308)
T COG1560 171 RFGGRLLPR----------KGEGIRQLIKALKQGEA 196 (308)
T ss_pred hcCCcccCC----------CchhHHHHHHHHhcCCe
Confidence 998766541 11445555556666643
No 391
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=21.22 E-value=4.9e+02 Score=22.57 Aligned_cols=22 Identities=0% Similarity=-0.096 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHcCCCeEEc
Q 021569 73 KMKAAKAAFDTSLDNGITFFDT 94 (311)
Q Consensus 73 ~~~~~~~~l~~Al~~Gi~~~DT 94 (311)
|.+++.++++.+++.|+...|+
T Consensus 13 D~~~~~~~l~~al~~~~~~~~i 34 (213)
T cd02069 13 IRDGIEEDTEEARQQYARPLEI 34 (213)
T ss_pred CHHHHHHHHHHHHHcCCCHHHH
Confidence 4578999999999998765554
No 392
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=21.15 E-value=4.2e+02 Score=26.20 Aligned_cols=11 Identities=36% Similarity=0.633 Sum_probs=5.2
Q ss_pred HHhhCCCCcce
Q 021569 155 LFRLGLSSVEL 165 (311)
Q Consensus 155 L~rL~~d~iDl 165 (311)
|.++|++.|++
T Consensus 34 Ld~~Gv~~IE~ 44 (467)
T PRK14041 34 FDRMGFYSMEV 44 (467)
T ss_pred HHHcCCCEEEe
Confidence 44445544444
No 393
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=21.10 E-value=2.1e+02 Score=27.44 Aligned_cols=16 Identities=19% Similarity=0.314 Sum_probs=14.1
Q ss_pred chhHHHHHhCCeEEEc
Q 021569 237 GVKAACDELGITLIAY 252 (311)
Q Consensus 237 ~l~~~~~~~gi~v~a~ 252 (311)
++.+.|+++||.+-.|
T Consensus 132 el~~A~rk~Glk~G~Y 147 (384)
T smart00812 132 ELADAVRKRGLKFGLY 147 (384)
T ss_pred HHHHHHHHcCCeEEEE
Confidence 6899999999999766
No 394
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=21.09 E-value=3.3e+02 Score=23.08 Aligned_cols=88 Identities=18% Similarity=0.245 Sum_probs=55.0
Q ss_pred cCCCeEEcCC--------CCCCCcCCCCCchHHHHHHHHHhccCCCCCccEEEEeeccCCCC----------CCCHHHHH
Q 021569 87 NGITFFDTAE--------VYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPW----------RLGRQSVL 148 (311)
Q Consensus 87 ~Gi~~~DTA~--------~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~----------~~~~~~i~ 148 (311)
.++-++||-. .|- |+. +-.+-..|+++ |-|+.|.++-- .+| ...+..+.
T Consensus 79 ~~v~fiDTD~itT~~~~~~y~-gr~------~P~~~~~i~~~-----r~DL~lLl~p~-t~wvaDG~R~~~~~~~R~~F~ 145 (187)
T COG3172 79 NKVAFIDTDFLTTQAFCKKYE-GRE------HPFLQALIAEY-----RFDLTLLLEPN-TPWVADGLRSLGSSVQRQEFQ 145 (187)
T ss_pred CceEEEeccHHHHHHHHHHHc-ccC------CchHHHHHhhc-----ccceEEEcCCC-CceeCCCccccccHhHHHHHH
Confidence 5899999842 332 222 44555666665 46888876642 222 23467788
Q ss_pred HHHHHHHHhhCCCCcceEEecCCCC-CChHHHHHHHHHHHHcC
Q 021569 149 AALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQG 190 (311)
Q Consensus 149 ~~~~~SL~rL~~d~iDl~~lH~p~~-~~~~~~~~~l~~l~~~G 190 (311)
.-+++.|++-+..|+ -|..++. ......+++.++|..++
T Consensus 146 ~~l~~~L~~~~~~~v---~i~~~~y~eR~~~~~~aV~ell~~~ 185 (187)
T COG3172 146 NLLEQMLEENNIPFV---VIEGEDYLERYLQAVEAVEELLGEK 185 (187)
T ss_pred HHHHHHHHHhCCcEE---EEcCCCHHHHHHHHHHHHHHHHhcc
Confidence 888889988876654 3444443 23456778888887766
No 395
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=21.05 E-value=2.1e+02 Score=26.12 Aligned_cols=55 Identities=16% Similarity=0.315 Sum_probs=37.7
Q ss_pred CCcHHHHHHHHHHHHhcCCCeeeeeec--cCc-------------Cc----CCccccchhHHHHHhCCeEEEcc
Q 021569 199 NYSEKRLRNAYEKLKKRGIPLASNQVN--YSL-------------IY----RKPEENGVKAACDELGITLIAYC 253 (311)
Q Consensus 199 n~~~~~l~~~~~~~~~~g~~~~~~Q~~--~~~-------------~~----~~~~~~~l~~~~~~~gi~v~a~s 253 (311)
.++.+++.++++..++.++|++++-+. |+- +. +-+.-.++++.++++|+.++.+.
T Consensus 21 y~s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v 94 (292)
T cd06595 21 PYSDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNL 94 (292)
T ss_pred CCCHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEe
Confidence 356788888888888889998887554 221 11 00111269999999999998764
No 396
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=21.04 E-value=5.7e+02 Score=25.57 Aligned_cols=108 Identities=11% Similarity=0.054 Sum_probs=56.7
Q ss_pred HHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHHHHHHhhCC-CCcceEEecCCCCCC-----hHHHHHHH
Q 021569 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL-SSVELYQLHWAGIWG-----NEGFIDGL 183 (311)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~rL~~-d~iDl~~lH~p~~~~-----~~~~~~~l 183 (311)
++-|-++|+......+.+=++|.|-+... .--+.+..-+++.-+.... +-+++..+|-|+... .+..++++
T Consensus 127 ~~~L~e~I~~~~~~y~P~~I~V~tTC~~e---vIGDDi~a~i~~~~~~~~~p~~~pVi~v~TpgF~Gs~~~Gyd~a~~ai 203 (515)
T TIGR01286 127 LKNMVDGLQNCYALYKPKMIAVSTTCMAE---VIGDDLNAFIGNAKKEGFIPDDFPVPFAHTPSFVGSHITGYDNMFKGI 203 (515)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcHHH---HhhccHHHHHHHHHHhcCCCCCCceEEeeCCCCcccHHHHHHHHHHHH
Confidence 66666777654432224667888877421 1122334444443344332 246899999998632 22333333
Q ss_pred HH-HH----------HcCccceEe-ecCCcHHHHHHHHHHHHhcCCCeee
Q 021569 184 GD-AV----------EQGLVKAVG-VSNYSEKRLRNAYEKLKKRGIPLAS 221 (311)
Q Consensus 184 ~~-l~----------~~G~ir~iG-vSn~~~~~l~~~~~~~~~~g~~~~~ 221 (311)
-+ +. ..++|--|| ...+ +..++++.+.++..|+++.+
T Consensus 204 l~~l~~~~~~~~~~~~~~~VNii~g~~~~-~gd~~eikrlL~~~Gi~~~~ 252 (515)
T TIGR01286 204 LEYFTKGSMDDKVVGSNGKINIIPGFETY-IGNFREIKRILSLMGVGYTL 252 (515)
T ss_pred HHHHhhcccccccCCCCCeEEEECCCCCC-chhHHHHHHHHHHcCCCeEE
Confidence 22 22 135677774 4333 45555655556667776554
No 397
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=20.97 E-value=6.5e+02 Score=23.06 Aligned_cols=73 Identities=23% Similarity=0.275 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeee
Q 021569 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (311)
Q Consensus 144 ~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~ 221 (311)
...+.+.+++.++.+| .++.+.........+...+.++.+...+ +..|=++..+...+...+ .+...++|+.+
T Consensus 61 ~~~~~~gi~~aa~~~G---~~l~i~~~~~~~~~~~q~~~i~~l~~~~-vdgIIl~~~~~~~~~~~l-~~~~~giPvV~ 133 (343)
T PRK10936 61 WLSVNYGMVEEAKRLG---VDLKVLEAGGYYNLAKQQQQLEQCVAWG-ADAILLGAVTPDGLNPDL-ELQAANIPVIA 133 (343)
T ss_pred HHHHHHHHHHHHHHhC---CEEEEEcCCCCCCHHHHHHHHHHHHHhC-CCEEEEeCCChHHhHHHH-HHHHCCCCEEE
Confidence 4567788888888887 3455544322233455667778877765 887777776666554444 34555666553
No 398
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=20.91 E-value=5.6e+02 Score=22.22 Aligned_cols=73 Identities=23% Similarity=0.149 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeee
Q 021569 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (311)
Q Consensus 144 ~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~g~~~~~ 221 (311)
...+...+++.++.+| +++.++........++..+.++.+... .+..|=+......... .+..+...|+|+.+
T Consensus 14 ~~~~~~gi~~~a~~~g---~~~~~~~~~~~~~~~~~~~~i~~~~~~-~vdgiI~~~~~~~~~~-~~~~~~~~giPvV~ 86 (268)
T cd06306 14 WLSVNYGMVEEAKRLG---VSLKLLEAGGYPNLAKQIAQLEDCAAW-GADAILLGAVSPDGLN-EILQQVAASIPVIA 86 (268)
T ss_pred HHHHHHHHHHHHHHcC---CEEEEecCCCCCCHHHHHHHHHHHHHc-CCCEEEEcCCChhhHH-HHHHHHHCCCCEEE
Confidence 4567778888888877 355555432112334555667777665 4666666655444333 23334556666553
No 399
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=20.83 E-value=5.2e+02 Score=21.86 Aligned_cols=118 Identities=13% Similarity=0.134 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHHHhccC---CCCCccEEE-E-eeccCC---CCCCCHH
Q 021569 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQ---RDPEVEVTV-A-TKFAAL---PWRLGRQ 145 (311)
Q Consensus 74 ~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~---~~~R~~~~I-~-tK~~~~---~~~~~~~ 145 (311)
.+++.++|..++..|-+.+ .||.|.| -.+++.+...-. +..|-.+.+ . +-.... ..+.+.
T Consensus 30 i~~a~~~i~~al~~~~rI~----i~G~G~S-------~~~A~~~a~~l~~~~~~~r~g~~~~~~~d~~~~~~~~~d~~~- 97 (192)
T PRK00414 30 IQRAAVLIADSFKAGGKVL----SCGNGGS-------HCDAMHFAEELTGRYRENRPGYPAIAISDVSHLSCVSNDFGY- 97 (192)
T ss_pred HHHHHHHHHHHHHCCCEEE----EEeCcHH-------HHHHHHHHHHhcccccCCCCCceEEecCcHHHHhhhhccCCH-
Confidence 4678888888888887765 7899876 555555541110 000111111 1 100000 001111
Q ss_pred HHHHHHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccceEeecCCcHHHHHHH
Q 021569 146 SVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNA 208 (311)
Q Consensus 146 ~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~ 208 (311)
...+.+.+..+. +.=|++++-... -...+++++++.+++.| ++-|+++++....+.+.
T Consensus 98 --~~~~~~~~~~~~-~~~Dv~I~iS~S-G~t~~~i~~~~~ak~~g-~~iI~iT~~~~s~l~~~ 155 (192)
T PRK00414 98 --DYVFSRYVEAVG-REGDVLLGISTS-GNSGNIIKAIEAARAKG-MKVITLTGKDGGKMAGL 155 (192)
T ss_pred --HHHHHHHHHHhC-CCCCEEEEEeCC-CCCHHHHHHHHHHHHCC-CeEEEEeCCCCChhHHh
Confidence 112222333332 455777765433 24567888888888887 88888888876666554
No 400
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=20.78 E-value=3.5e+02 Score=22.98 Aligned_cols=66 Identities=18% Similarity=0.054 Sum_probs=38.0
Q ss_pred HHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccceEeecC-CcHHHHHHHHHHHHhcCCCeeeeeeccCc
Q 021569 155 LFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSN-YSEKRLRNAYEKLKKRGIPLASNQVNYSL 228 (311)
Q Consensus 155 L~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir~iGvSn-~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~ 228 (311)
+..++.||+=+.+ +|.. +..-..+.+.+|.+.-..+.+||.- -+.+++.++.+. ..++++|++-+.
T Consensus 15 ~~~~g~d~~Gfi~--~~~S-~R~v~~~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~~-----~~ld~vQLHG~e 81 (197)
T PF00697_consen 15 AAELGADYLGFIF--YPKS-PRYVSPDQARELVSAVPPKIVGVFVNQSPEEILEIVEE-----LGLDVVQLHGDE 81 (197)
T ss_dssp HHHHTSSEEEEE----TTC-TTB--HHHHHHHHCCSSSSEEEEESSS-HHHHHHHHHH-----CTESEEEE-SGG
T ss_pred HHHcCCCEEeeec--CCCC-CCccCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHH-----cCCCEEEECCCC
Confidence 4568999988753 3432 2222344455555555555889864 466667776554 579999988544
No 401
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=20.70 E-value=2.4e+02 Score=25.95 Aligned_cols=56 Identities=14% Similarity=0.213 Sum_probs=32.2
Q ss_pred cceEEecCCCCCChHHHHHHHHHHHHcCccceEeecCCcH--HHHHHHHHHHHhcCC-Ceeeeee
Q 021569 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSE--KRLRNAYEKLKKRGI-PLASNQV 224 (311)
Q Consensus 163 iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~--~~l~~~~~~~~~~g~-~~~~~Q~ 224 (311)
.|.++|.-|.+ .+.+--+-..|+++| ..+|+|++ +|+++..+.+...|+ .+..+.+
T Consensus 178 aDaVFLDlPaP--w~AiPha~~~lk~~g----~r~csFSPCIEQvqrtce~l~~~gf~~i~~vEv 236 (314)
T KOG2915|consen 178 ADAVFLDLPAP--WEAIPHAAKILKDEG----GRLCSFSPCIEQVQRTCEALRSLGFIEIETVEV 236 (314)
T ss_pred cceEEEcCCCh--hhhhhhhHHHhhhcC----ceEEeccHHHHHHHHHHHHHHhCCCceEEEEEe
Confidence 45666665543 111111223455555 48899986 788888777777773 4444433
No 402
>PRK09358 adenosine deaminase; Provisional
Probab=20.69 E-value=6.7e+02 Score=23.08 Aligned_cols=111 Identities=15% Similarity=0.133 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHhh---CCCCcceE---EecCCCCCChHHHHHHHHHHHHc-----CccceEeec---CCcHHHHHH
Q 021569 142 LGRQSVLAALKDSLFRL---GLSSVELY---QLHWAGIWGNEGFIDGLGDAVEQ-----GLVKAVGVS---NYSEKRLRN 207 (311)
Q Consensus 142 ~~~~~i~~~~~~SL~rL---~~d~iDl~---~lH~p~~~~~~~~~~~l~~l~~~-----G~ir~iGvS---n~~~~~l~~ 207 (311)
.+++.++......++.+ |+-|++++ +.|.....+.++.++++.+..++ |.--.+.++ .++++...+
T Consensus 74 ~t~ed~~~~~~~~~~e~~~~Gvty~E~~~~p~~~~~~gl~~~~~~~a~~~~~~~a~~~~gi~~~li~~~~r~~~~~~~~~ 153 (340)
T PRK09358 74 QTEEDLRRLAFEYLEDAAADGVVYAEIRFDPQLHTERGLPLEEVVEAVLDGLRAAEAEFGISVRLILCFMRHFGEEAAAR 153 (340)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEEeChhhhhhcCCCHHHHHHHHHHHHHHHHHhcCceEEEEEEecCCCCHHHHHH
Q ss_pred HHHHHHh--cCCCeeeeeeccC-cCcCCccccchhHHHHHhCCeEEEc
Q 021569 208 AYEKLKK--RGIPLASNQVNYS-LIYRKPEENGVKAACDELGITLIAY 252 (311)
Q Consensus 208 ~~~~~~~--~g~~~~~~Q~~~~-~~~~~~~~~~l~~~~~~~gi~v~a~ 252 (311)
.++.+.. .+-.+..+-+... .-........+++.|+++|+.+..+
T Consensus 154 ~~~~~~~~~~~~~vvg~~l~g~e~~~~~~~~~~~~~~A~~~g~~~~~H 201 (340)
T PRK09358 154 ELEALAARYRDDGVVGFDLAGDELGFPPSKFARAFDRARDAGLRLTAH 201 (340)
T ss_pred HHHHHHHHhcCCcEEEEeCCCcCCCCCHHHHHHHHHHHHHCCCCeEEc
No 403
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=20.68 E-value=4.6e+02 Score=21.20 Aligned_cols=54 Identities=7% Similarity=0.066 Sum_probs=31.0
Q ss_pred chhHHHHHhCCeEEEcccCccccccCCCCCCCCCCCCCCCCCchHhHhhHHHHHHHHHHHHHhcCCCcc
Q 021569 237 GVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTST 305 (311)
Q Consensus 237 ~l~~~~~~~gi~v~a~spL~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~~ 305 (311)
.+++.++..+..++..++.-.. + ...+.....+...++-+.++++|+++++...
T Consensus 96 ~~i~~i~~~~~~vil~~~~~~~---~------------~~~~~~~~~~~~~~~n~~l~~~a~~~~v~~v 149 (185)
T cd01832 96 EAVRRLRAAGARVVVFTIPDPA---V------------LEPFRRRVRARLAAYNAVIRAVAARYGAVHV 149 (185)
T ss_pred HHHHHHHhCCCEEEEecCCCcc---c------------cchhHHHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 4677777778888776654320 0 0011112222345555688999999987543
No 404
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=20.64 E-value=94 Score=28.83 Aligned_cols=48 Identities=15% Similarity=0.257 Sum_probs=0.0
Q ss_pred CcHHHHHHHHHHHHhcCCCeeeeeeccCc------------------------CcCCccccchhHHHHHhCCeEEE
Q 021569 200 YSEKRLRNAYEKLKKRGIPLASNQVNYSL------------------------IYRKPEENGVKAACDELGITLIA 251 (311)
Q Consensus 200 ~~~~~l~~~~~~~~~~g~~~~~~Q~~~~~------------------------~~~~~~~~~l~~~~~~~gi~v~a 251 (311)
++.+.|+++++.....+ .|.+++|+ ++...+-.+++++|+++||.||.
T Consensus 15 ~~~~~ik~~Id~ma~~K----lN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~rgI~vIP 86 (311)
T cd06570 15 IPVAVIKRQLDAMASVK----LNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIRVVP 86 (311)
T ss_pred cCHHHHHHHHHHHHHhC----CeEEEEEEecCCCceeecCCCccccccCCCCCccCHHHHHHHHHHHHHcCCEEEE
No 405
>PLN02610 probable methionyl-tRNA synthetase
Probab=20.57 E-value=3.9e+02 Score=28.41 Aligned_cols=46 Identities=11% Similarity=-0.029 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccc
Q 021569 146 SVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK 193 (311)
Q Consensus 146 ~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir 193 (311)
.+.+.+++.+++|++++ |.|.-. .++.-.+-+.+.+.+|.++|.|-
T Consensus 88 ~~~~~~~~~~~~l~i~~-D~f~rT-~~~~h~~~vq~~f~~L~~~G~Iy 133 (801)
T PLN02610 88 KYHAIHKEVYDWFDISF-DKFGRT-STPQQTEICQAIFKKLMENNWLS 133 (801)
T ss_pred HHHHHHHHHHHHcCCcc-ccCccC-CCHHHHHHHHHHHHHHHHCCCEE
Confidence 45567888999999875 643221 11122456778889999999874
No 406
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=20.50 E-value=63 Score=19.81 Aligned_cols=17 Identities=6% Similarity=0.257 Sum_probs=13.0
Q ss_pred HHHHHHHhcCCCcchhc
Q 021569 292 RIKELGENYSKTSTQFS 308 (311)
Q Consensus 292 ~l~~iA~~~g~s~~qva 308 (311)
.+..||++++++..++.
T Consensus 8 tl~~IA~~~~~~~~~l~ 24 (44)
T PF01476_consen 8 TLWSIAKRYGISVDELM 24 (44)
T ss_dssp -HHHHHHHTTS-HHHHH
T ss_pred cHHHHHhhhhhhHhHHH
Confidence 68899999999988774
No 407
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=20.42 E-value=6.6e+02 Score=22.93 Aligned_cols=74 Identities=20% Similarity=0.236 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCc-c-ceEeecCCcH------------HHHHH
Q 021569 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGL-V-KAVGVSNYSE------------KRLRN 207 (311)
Q Consensus 142 ~~~~~i~~~~~~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~-i-r~iGvSn~~~------------~~l~~ 207 (311)
...+.+++-++..++ +. +-+.+-.--+|+.. .++.++.|.++++.|. + -++|+=+++. +++.+
T Consensus 91 l~~~~L~~l~~~i~~-~~-~~~~isi~trpd~l-~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i~Rg~t~~~~~~ 167 (302)
T TIGR01212 91 APVEVLKEMYEQALS-YD-DVVGLSVGTRPDCV-PDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKINRGHDFACYVD 167 (302)
T ss_pred CCHHHHHHHHHHHhC-CC-CEEEEEEEecCCcC-CHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHHcCcChHHHHHH
Confidence 455555555555544 11 11122111134432 3456677777777776 4 3566654433 34444
Q ss_pred HHHHHHhcCCC
Q 021569 208 AYEKLKKRGIP 218 (311)
Q Consensus 208 ~~~~~~~~g~~ 218 (311)
+++.+++.|+.
T Consensus 168 ai~~l~~~gi~ 178 (302)
T TIGR01212 168 AVKRARKRGIK 178 (302)
T ss_pred HHHHHHHcCCE
Confidence 55555555554
No 408
>PLN02623 pyruvate kinase
Probab=20.42 E-value=9.2e+02 Score=24.60 Aligned_cols=70 Identities=13% Similarity=0.216 Sum_probs=44.7
Q ss_pred HHHHHHHHcCCCeEEcCCCCCCCcCCCCCchHHHHHHHHHhccCCCCCccEEEEeeccCCCCCCCHHHHHHHHHHHHHhh
Q 021569 79 AAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRL 158 (311)
Q Consensus 79 ~~l~~Al~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~~~~SL~rL 158 (311)
+.|+.+++.|+.||-.+-.=.. .. =+.+.+.++... .++.|..|+- +++.+ +.+++.++
T Consensus 282 ~di~f~~~~~vD~ialSFVr~a-~D------V~~~r~~l~~~~-----~~~~iiakIE------t~eaV-eNldeIl~-- 340 (581)
T PLN02623 282 EDIKFGVENKVDFYAVSFVKDA-QV------VHELKDYLKSCN-----ADIHVIVKIE------SADSI-PNLHSIIT-- 340 (581)
T ss_pred HHHHHHHHcCCCEEEECCCCCH-HH------HHHHHHHHHHcC-----CcceEEEEEC------CHHHH-HhHHHHHH--
Confidence 4478999999999866543221 11 233566676643 5789999983 33333 35666666
Q ss_pred CCCCcceEEecCCC
Q 021569 159 GLSSVELYQLHWAG 172 (311)
Q Consensus 159 ~~d~iDl~~lH~p~ 172 (311)
.+|.+++-.-|
T Consensus 341 ---g~DgImIgrgD 351 (581)
T PLN02623 341 ---ASDGAMVARGD 351 (581)
T ss_pred ---hCCEEEECcch
Confidence 57888887655
No 409
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=20.19 E-value=4.1e+02 Score=25.63 Aligned_cols=16 Identities=13% Similarity=0.318 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhhCCC
Q 021569 146 SVLAALKDSLFRLGLS 161 (311)
Q Consensus 146 ~i~~~~~~SL~rL~~d 161 (311)
...+-++..|+++|++
T Consensus 114 ~t~~~~~~~l~~~gi~ 129 (396)
T COG0626 114 GTYRLFEKILQKFGVE 129 (396)
T ss_pred hHHHHHHHHHHhcCeE
Confidence 4566677777777753
No 410
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=20.10 E-value=6.3e+02 Score=22.53 Aligned_cols=54 Identities=15% Similarity=0.089 Sum_probs=39.8
Q ss_pred HHHHhhCCCCcceEEecCCCCCChHHHHHHHHHHHHcCccceEeecCCcHHHHHHH
Q 021569 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNA 208 (311)
Q Consensus 153 ~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~ 208 (311)
+.+...+...=|+++.-.... ...+++++++.+++.| +.-|++++.....+.+.
T Consensus 109 ~~l~a~~l~~~DvvI~IS~SG-~T~~vi~al~~Ak~~G-a~~I~It~~~~s~L~~~ 162 (257)
T cd05007 109 ADLQAINLTERDVVIGIAASG-RTPYVLGALRYARARG-ALTIGIACNPGSPLLQL 162 (257)
T ss_pred HHHHHcCCCCCCEEEEEeCCC-CCHHHHHHHHHHHHCC-CeEEEEECCCCChhHHh
Confidence 344455666778887765432 3556999999999998 78899999877777665
No 411
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=20.09 E-value=5.8e+02 Score=24.15 Aligned_cols=13 Identities=46% Similarity=0.664 Sum_probs=5.8
Q ss_pred hhHHHHHhCCeEE
Q 021569 238 VKAACDELGITLI 250 (311)
Q Consensus 238 l~~~~~~~gi~v~ 250 (311)
+.++|+++|+.++
T Consensus 159 I~~la~~~gi~li 171 (385)
T PRK08574 159 VAKAAKELGAILV 171 (385)
T ss_pred HHHHHHHcCCEEE
Confidence 4444444444444
No 412
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=20.07 E-value=2.4e+02 Score=26.48 Aligned_cols=52 Identities=17% Similarity=0.411 Sum_probs=33.6
Q ss_pred cHHHHHHHHHHHHhcCCCeeeeeec---------------c-----------CcCc-----CCccccchhHHHHHhCCeE
Q 021569 201 SEKRLRNAYEKLKKRGIPLASNQVN---------------Y-----------SLIY-----RKPEENGVKAACDELGITL 249 (311)
Q Consensus 201 ~~~~l~~~~~~~~~~g~~~~~~Q~~---------------~-----------~~~~-----~~~~~~~l~~~~~~~gi~v 249 (311)
+.++++++++..++.++|++++.+. | +.+. +-+.-.++++.+++.|+.+
T Consensus 22 ~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~~Lh~~G~kv 101 (340)
T cd06597 22 TQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMIDELHEQGVKV 101 (340)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHHHHHHCCCEE
Confidence 5677777777777788888886553 1 1110 0011236999999999999
Q ss_pred EEc
Q 021569 250 IAY 252 (311)
Q Consensus 250 ~a~ 252 (311)
+.|
T Consensus 102 ~l~ 104 (340)
T cd06597 102 LLW 104 (340)
T ss_pred EEE
Confidence 754
No 413
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=20.03 E-value=5.7e+02 Score=22.03 Aligned_cols=14 Identities=29% Similarity=0.572 Sum_probs=9.1
Q ss_pred chhHHHHHh-CCeEE
Q 021569 237 GVKAACDEL-GITLI 250 (311)
Q Consensus 237 ~l~~~~~~~-gi~v~ 250 (311)
++.+.|+++ |+.+.
T Consensus 143 g~~~~~~~~~~~~~~ 157 (275)
T cd06320 143 GFTEAIKKASGIEVV 157 (275)
T ss_pred HHHHHHhhCCCcEEE
Confidence 466677777 76654
Done!