BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021570
(311 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AEC|A Chain A, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl-
Serine-(Thiol)-Lyase C
pdb|4AEC|B Chain B, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl-
Serine-(Thiol)-Lyase C
Length = 430
Score = 353 bits (906), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 169/218 (77%), Positives = 190/218 (87%), Gaps = 2/218 (0%)
Query: 55 SVVCKAVSVKPQTGIEGLNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSV 114
SVVC+AV K +TG +GLNIA++V+QLIGKTPMVYLN+I KGCVANIAAKLEIMEPCCSV
Sbjct: 96 SVVCEAV--KRETGPDGLNIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSV 153
Query: 115 KDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLER 174
KDRIG+SM+ DAEQKG I+PGKS+LVEPTSGNTGIGLAFIAAS+GY+LILTMPASMS+ER
Sbjct: 154 KDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMER 213
Query: 175 RVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEI 234
RVLLKAFGAELVLTD AKGM GAVQKAEEIL +TP+AYMLQQFDNPANPKIHYETTGPEI
Sbjct: 214 RVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEI 273
Query: 235 WEDTRGKVDXXXXXXXXXXXXXXXXRYLKEKNPNIKVI 272
W+DT+GKVD R++KEKNP +VI
Sbjct: 274 WDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVI 311
>pdb|1Z7W|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From
Arabidopsis Thaliana
Length = 322
Score = 299 bits (765), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 138/198 (69%), Positives = 163/198 (82%)
Query: 74 IAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLIT 133
IA+DVT+LIG TP+VYLN + +GCV +AAKLE+MEPC SVKDRIGFSMI+DAE+KGLI
Sbjct: 5 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIK 64
Query: 134 PGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKG 193
PG+S+L+EPTSGNTG+GLAF AA+KGYKLI+TMPASMS ERR++L AFG ELVLTD AKG
Sbjct: 65 PGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKG 124
Query: 194 MKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEIWEDTRGKVDXXXXXXXXXX 253
MKGA+ KAEEIL TPN YMLQQF+NPANPKIHYETTGPEIW+ T GK+D
Sbjct: 125 MKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGG 184
Query: 254 XXXXXXRYLKEKNPNIKV 271
+YLKE+N N+K+
Sbjct: 185 TITGAGKYLKEQNANVKL 202
>pdb|2ISQ|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From
Arabidopsis Thaliana In Complex With C-Terminal Peptide
From Arabidopsis Serine Acetyltransferase
Length = 320
Score = 299 bits (765), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 138/198 (69%), Positives = 163/198 (82%)
Query: 74 IAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLIT 133
IA+DVT+LIG TP+VYLN + +GCV +AAKLE+MEPC SVKDRIGFSMI+DAE+KGLI
Sbjct: 3 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIK 62
Query: 134 PGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKG 193
PG+S+L+EPTSGNTG+GLAF AA+KGYKLI+TMPASMS ERR++L AFG ELVLTD AKG
Sbjct: 63 PGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKG 122
Query: 194 MKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEIWEDTRGKVDXXXXXXXXXX 253
MKGA+ KAEEIL TPN YMLQQF+NPANPKIHYETTGPEIW+ T GK+D
Sbjct: 123 MKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGG 182
Query: 254 XXXXXXRYLKEKNPNIKV 271
+YLKE+N N+K+
Sbjct: 183 TITGAGKYLKEQNANVKL 200
>pdb|1Z7Y|A Chain A, Crystal Structure Of The Arabidopsis Thaliana
O-Acetylserine Sulfhydrylase K46a Mutant
Length = 322
Score = 296 bits (759), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 137/198 (69%), Positives = 162/198 (81%)
Query: 74 IAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLIT 133
IA+DVT+LIG TP+VYLN + +GCV +AAKLE+MEPC SV DRIGFSMI+DAE+KGLI
Sbjct: 5 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVADRIGFSMISDAEKKGLIK 64
Query: 134 PGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKG 193
PG+S+L+EPTSGNTG+GLAF AA+KGYKLI+TMPASMS ERR++L AFG ELVLTD AKG
Sbjct: 65 PGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKG 124
Query: 194 MKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEIWEDTRGKVDXXXXXXXXXX 253
MKGA+ KAEEIL TPN YMLQQF+NPANPKIHYETTGPEIW+ T GK+D
Sbjct: 125 MKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGG 184
Query: 254 XXXXXXRYLKEKNPNIKV 271
+YLKE+N N+K+
Sbjct: 185 TITGAGKYLKEQNANVKL 202
>pdb|3VBE|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|B Chain B, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|C Chain C, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|D Chain D, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
Length = 344
Score = 263 bits (671), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 119/199 (59%), Positives = 153/199 (76%)
Query: 73 NIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLI 132
NI + V+QLIG+TP+VYLN + +GC A +A K E+M+P S+KDR ++MI DAE+K LI
Sbjct: 24 NIKKHVSQLIGRTPLVYLNKVTEGCGAYVAVKQEMMQPTASIKDRPAYAMITDAEEKNLI 83
Query: 133 TPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAK 192
TPGK+ L+EPTSGN GI +AF+AA KGYK++LTMP+ SLERRV ++AFGAEL+LTD AK
Sbjct: 84 TPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPAK 143
Query: 193 GMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEIWEDTRGKVDXXXXXXXXX 252
GM G V+KA E+L +TPNA+MLQQF NPAN ++H+ETTGPEIWEDT G+VD
Sbjct: 144 GMGGTVKKAYELLENTPNAHMLQQFSNPANTQVHFETTGPEIWEDTNGQVDIFVMGIGSG 203
Query: 253 XXXXXXXRYLKEKNPNIKV 271
+YLK KNPN+K+
Sbjct: 204 GTVSGVGQYLKSKNPNVKI 222
>pdb|3VC3|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|B Chain B, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|C Chain C, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|D Chain D, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|E Chain E, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|F Chain F, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
Length = 344
Score = 261 bits (666), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 118/199 (59%), Positives = 152/199 (76%)
Query: 73 NIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLI 132
NI + V+QLIG+TP+VYLN + +GC A +A K E+M+P S+ DR ++MI DAE+K LI
Sbjct: 24 NIKKHVSQLIGRTPLVYLNKVTEGCGAYVAVKQEMMQPTASIADRPAYAMITDAEEKNLI 83
Query: 133 TPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAK 192
TPGK+ L+EPTSGN GI +AF+AA KGYK++LTMP+ SLERRV ++AFGAEL+LTD AK
Sbjct: 84 TPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPAK 143
Query: 193 GMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEIWEDTRGKVDXXXXXXXXX 252
GM G V+KA E+L +TPNA+MLQQF NPAN ++H+ETTGPEIWEDT G+VD
Sbjct: 144 GMGGTVKKAYELLENTPNAHMLQQFSNPANTQVHFETTGPEIWEDTNGQVDIFVMGIGSG 203
Query: 253 XXXXXXXRYLKEKNPNIKV 271
+YLK KNPN+K+
Sbjct: 204 GTVSGVGQYLKSKNPNVKI 222
>pdb|2Q3D|A Chain A, 2.2 A Resolution Crystal Structure Of O-acetylserine
Sulfhydrylase (oass) From Mycobacterium Tuberculosis In
Complex With The Reaction Intermediate
Alpha-aminoacrylate
Length = 313
Score = 217 bits (552), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 103/201 (51%), Positives = 138/201 (68%), Gaps = 1/201 (0%)
Query: 72 LNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGL 131
++IAED+TQLIG+TP+V L + G VA+I AKLE P SVKDRIG +M+ AEQ GL
Sbjct: 4 MSIAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGL 63
Query: 132 ITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSA 191
I P +I++EPTSGNTGI LA + A++GY+ +LTMP +MSLERR+LL+A+GAEL+LT A
Sbjct: 64 IKP-DTIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGA 122
Query: 192 KGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEIWEDTRGKVDXXXXXXXX 251
GM GA+ KAEE+ + ++ QQF+NPANP IH TT E+W DT GKVD
Sbjct: 123 DGMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGT 182
Query: 252 XXXXXXXXRYLKEKNPNIKVI 272
+ +KE+ P+ + +
Sbjct: 183 GGTITGVAQVIKERKPSARFV 203
>pdb|2Q3B|A Chain A, 1.8 A Resolution Crystal Structure Of O-Acetylserine
Sulfhydrylase (Oass) Holoenzyme From Mycobacterium
Tuberculosis
pdb|2Q3C|A Chain A, 2.1 A Resolution Crystal Structure Of O-Acetylserine
Sulfhydrylase (Oass) Holoenzyme From Mycobacterium
Tuberculosis In Complex With The Inhibitory Peptide Dfsi
Length = 313
Score = 214 bits (546), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 102/201 (50%), Positives = 137/201 (68%), Gaps = 1/201 (0%)
Query: 72 LNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGL 131
++IAED+TQLIG+TP+V L + G VA+I AKLE P SV DRIG +M+ AEQ GL
Sbjct: 4 MSIAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVXDRIGVAMLQAAEQAGL 63
Query: 132 ITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSA 191
I P +I++EPTSGNTGI LA + A++GY+ +LTMP +MSLERR+LL+A+GAEL+LT A
Sbjct: 64 IKP-DTIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGA 122
Query: 192 KGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEIWEDTRGKVDXXXXXXXX 251
GM GA+ KAEE+ + ++ QQF+NPANP IH TT E+W DT GKVD
Sbjct: 123 DGMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGT 182
Query: 252 XXXXXXXXRYLKEKNPNIKVI 272
+ +KE+ P+ + +
Sbjct: 183 GGTITGVAQVIKERKPSARFV 203
>pdb|1OAS|A Chain A, O-Acetylserine Sulfhydrylase From Salmonella Typhimurium
pdb|1OAS|B Chain B, O-Acetylserine Sulfhydrylase From Salmonella Typhimurium
pdb|1FCJ|A Chain A, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|B Chain B, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|C Chain C, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|D Chain D, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
Length = 322
Score = 209 bits (533), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 111/191 (58%), Positives = 134/191 (70%), Gaps = 5/191 (2%)
Query: 74 IAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLIT 133
I ED + IG TP+V LN I G I AK+E P SVK RIG +MI DAE++G++
Sbjct: 3 IYEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVKCRIGANMIWDAEKRGVLK 59
Query: 134 PGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKG 193
PG LVEPT+GNTGI LA++AA++GYKL LTMP +MS+ERR LLKA GA LVLT+ AKG
Sbjct: 60 PGVE-LVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKG 118
Query: 194 MKGAVQKAEEILNSTPNAY-MLQQFDNPANPKIHYETTGPEIWEDTRGKVDXXXXXXXXX 252
MKGA+QKAEEI+ S P Y +LQQF NPANP+IH +TTGPEIWEDT G+VD
Sbjct: 119 MKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVGTG 178
Query: 253 XXXXXXXRYLK 263
RY+K
Sbjct: 179 GTLTGVTRYIK 189
>pdb|1D6S|A Chain A, Crystal Structure Of The K41a Mutant Of O-Acetylserine
Sulfhydrylase Complexed In External Aldimine Linkage
With Methionine
pdb|1D6S|B Chain B, Crystal Structure Of The K41a Mutant Of O-Acetylserine
Sulfhydrylase Complexed In External Aldimine Linkage
With Methionine
Length = 322
Score = 207 bits (528), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 110/191 (57%), Positives = 133/191 (69%), Gaps = 5/191 (2%)
Query: 74 IAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLIT 133
I ED + IG TP+V LN I G I AK+E P SV RIG +MI DAE++G++
Sbjct: 3 IYEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVACRIGANMIWDAEKRGVLK 59
Query: 134 PGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKG 193
PG LVEPT+GNTGI LA++AA++GYKL LTMP +MS+ERR LLKA GA LVLT+ AKG
Sbjct: 60 PGVE-LVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKG 118
Query: 194 MKGAVQKAEEILNSTPNAY-MLQQFDNPANPKIHYETTGPEIWEDTRGKVDXXXXXXXXX 252
MKGA+QKAEEI+ S P Y +LQQF NPANP+IH +TTGPEIWEDT G+VD
Sbjct: 119 MKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVGTG 178
Query: 253 XXXXXXXRYLK 263
RY+K
Sbjct: 179 GTLTGVTRYIK 189
>pdb|3RR2|A Chain A, Structure Of A Cysteine Synthase (O-Acetylserine
Sulfhydrylase (Oass)) From Mycobacterium Marinum Atcc
Baa-535 M
Length = 314
Score = 207 bits (527), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 98/201 (48%), Positives = 137/201 (68%), Gaps = 1/201 (0%)
Query: 72 LNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGL 131
+ IAE++TQLIG TP+V L + G A++ AKLE P S+KDRIG +MI AE+ GL
Sbjct: 5 MTIAENITQLIGGTPLVRLRRVTDGAAADVVAKLESFNPAGSIKDRIGVAMIDAAEKAGL 64
Query: 132 ITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSA 191
I P +I++EPTSGNTGI LA ++A++GYK +LTMP +MS+ERR+LL+A+GAELVLT A
Sbjct: 65 IKP-DTIILEPTSGNTGIALAMVSAARGYKCVLTMPDTMSIERRMLLRAYGAELVLTPGA 123
Query: 192 KGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEIWEDTRGKVDXXXXXXXX 251
+GM GA+ KAEE+ + ++ QQF+NPANP +H TT E+W DT GKVD
Sbjct: 124 EGMAGAIAKAEELAKTDDRYFIPQQFENPANPAVHAVTTAEEVWRDTDGKVDIFVSGVGT 183
Query: 252 XXXXXXXXRYLKEKNPNIKVI 272
+ +K++ P+ + +
Sbjct: 184 GGTITGVAQVIKQRRPSAQFV 204
>pdb|4I1Y|A Chain A, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|B Chain B, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|C Chain C, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|D Chain D, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
Length = 314
Score = 205 bits (522), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 97/201 (48%), Positives = 136/201 (67%), Gaps = 1/201 (0%)
Query: 72 LNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGL 131
+ IAE++ QLIG TP+V L + G A++ AKLE P S+KDRIG +MI AE+ GL
Sbjct: 5 MTIAENIAQLIGGTPLVRLRRVTDGAAADVVAKLESFNPAGSIKDRIGVAMIDAAEKAGL 64
Query: 132 ITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSA 191
I P +I++EPTSGNTGI LA ++A++GYK +LTMP +MS+ERR+LL+A+GAELVLT A
Sbjct: 65 IKP-DTIILEPTSGNTGIALAMVSAARGYKCVLTMPDTMSIERRMLLRAYGAELVLTPGA 123
Query: 192 KGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEIWEDTRGKVDXXXXXXXX 251
+GM GA+ KAEE+ + ++ QQF+NPANP +H TT E+W DT GKVD
Sbjct: 124 EGMAGAIAKAEELAKTDDRYFIPQQFENPANPAVHAVTTAEEVWRDTDGKVDIFVSGVGT 183
Query: 252 XXXXXXXXRYLKEKNPNIKVI 272
+ +K++ P+ + +
Sbjct: 184 GGTITGVAQVIKQRRPSAQFV 204
>pdb|1VE1|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase
pdb|2ECO|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Methylvalerate
pdb|2ECQ|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 3-Hydroxylactate
pdb|2EFY|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Acetylbutyric Acid
pdb|2EFY|B Chain B, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Acetylbutyric Acid
Length = 304
Score = 189 bits (480), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 100/196 (51%), Positives = 130/196 (66%), Gaps = 2/196 (1%)
Query: 78 VTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKS 137
V IGKTP+V L +V+ +A + KLE + P S+KDR + MI DAE++G++ PG
Sbjct: 3 VEGAIGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSG 62
Query: 138 -ILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKG 196
++VEPTSGNTGIGLA IAAS+GY+LILTMPA MS ER+ +LKAFGAELVLTD + M
Sbjct: 63 QVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLA 122
Query: 197 AVQKAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEIWEDTRGKVDXXXXXXXXXXXXX 256
A ++A L A+M QF NPAN + HYETTGPE++E G++D
Sbjct: 123 AREEALR-LKEELGAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTIT 181
Query: 257 XXXRYLKEKNPNIKVI 272
RYLKE+ P++KVI
Sbjct: 182 GVGRYLKERIPHVKVI 197
>pdb|2EGU|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrase From
Geobacillus Kaustophilus Hta426
Length = 308
Score = 189 bits (479), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 101/194 (52%), Positives = 127/194 (65%), Gaps = 2/194 (1%)
Query: 78 VTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKS 137
+T+LIG TP V LN IV A++ KLE M P SVKDRI +MI AE+ G + PG +
Sbjct: 8 ITELIGDTPAVKLNRIVDEDSADVYLKLEFMNPGSSVKDRIALAMIEAAEKAGKLKPGDT 67
Query: 138 ILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGA 197
I VEPTSGNTGIGLA +AA+KGYK +L MP +MSLERR LL+A+GAELVLT A+GM+GA
Sbjct: 68 I-VEPTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGAQGMRGA 126
Query: 198 VQKAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEIWEDTRGKVDXXXXXXXXXXXXXX 257
+ KAEE++ +M QQF N ANP+IH TTG EI E ++D
Sbjct: 127 IAKAEELVREH-GYFMPQQFKNEANPEIHRLTTGKEIVEQMGDQLDAFVAGVGTGGTITG 185
Query: 258 XXRYLKEKNPNIKV 271
+ L+E PNIK+
Sbjct: 186 AGKVLREAYPNIKI 199
>pdb|4AIR|A Chain A, Leishmania Major Cysteine Synthase
pdb|4AIR|B Chain B, Leishmania Major Cysteine Synthase
Length = 354
Score = 184 bits (468), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 93/200 (46%), Positives = 129/200 (64%), Gaps = 1/200 (0%)
Query: 73 NIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLI 132
N+A+ + QLIG+TP +YLN + A + K+E P SVKDR+GF++ AE++G +
Sbjct: 31 NVAQSIDQLIGQTPALYLNKL-NNTKAKVVLKMECENPMASVKDRLGFAIYDKAEKEGKL 89
Query: 133 TPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAK 192
PGKS++VE +SGNTG+ LA + A +GYK+I+TMP SMSLERR LL+ FGAE++LT +A
Sbjct: 90 IPGKSVVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAAL 149
Query: 193 GMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEIWEDTRGKVDXXXXXXXXX 252
GMKGAV A++I+ + PNA + QF N IH ETTGPEIWE T VD
Sbjct: 150 GMKGAVTMAKKIVTANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDCFIAGVGTG 209
Query: 253 XXXXXXXRYLKEKNPNIKVI 272
R LK+ + +++
Sbjct: 210 GTLTGVARALKKMGSHARIV 229
>pdb|3T4P|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From
Leishmania Donovani In Complex With Designed
Tetrapeptide
pdb|3TBH|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase In
Complex With Octapeptide Derived From Serine Acetyl
Transferase Of Leishmania Donovani
pdb|3SPX|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From
Leishmania Donovani
Length = 334
Score = 183 bits (464), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 93/200 (46%), Positives = 128/200 (64%), Gaps = 1/200 (0%)
Query: 73 NIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLI 132
N+A+ + QLIG+TP +YLN + A + K+E P SV DR+GF++ AE++G +
Sbjct: 10 NVAQSIDQLIGQTPALYLNKL-NNTKAKVVLKMECENPMASVXDRLGFAIYDKAEKEGKL 68
Query: 133 TPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAK 192
PGKSI+VE +SGNTG+ LA + A +GYK+I+TMP SMSLERR LL+ FGAE++LT +A
Sbjct: 69 IPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAAL 128
Query: 193 GMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEIWEDTRGKVDXXXXXXXXX 252
GMKGAV A++I+ + PNA + QF N IH ETTGPEIWE T VD
Sbjct: 129 GMKGAVAMAKKIVAANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDCFIAGVGTG 188
Query: 253 XXXXXXXRYLKEKNPNIKVI 272
R LK+ + +++
Sbjct: 189 GTLTGVARALKKMGSHARIV 208
>pdb|1Y7L|A Chain A, O-Acetylserine Sulfhydrylase Complex
pdb|3IQG|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex With
Peptide Mnwni
pdb|3IQH|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex With
Peptide Mnydi
pdb|3IQI|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex With
Peptide Mneni
Length = 316
Score = 177 bits (448), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 93/168 (55%), Positives = 118/168 (70%), Gaps = 4/168 (2%)
Query: 72 LNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGL 131
+ I D + IG TP+V L G N+ K+E P SV RIG +M+ AE+ G
Sbjct: 1 MAIYADNSYSIGNTPLVRLKHF--GHNGNVVVKIEGRNPSYSVXCRIGANMVWQAEKDGT 58
Query: 132 ITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSA 191
+T GK I V+ TSGNTGI LA++AA++GYK+ LTMP +MSLER+ LL G LVLT+ A
Sbjct: 59 LTKGKEI-VDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGA 117
Query: 192 KGMKGAVQKAEEILNSTPNAY-MLQQFDNPANPKIHYETTGPEIWEDT 238
KGMKGA+ KAEEI+ S P+ Y ML+QF+NPANP+IH ETTGPEIW+DT
Sbjct: 118 KGMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDT 165
>pdb|2BHS|A Chain A, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|B Chain B, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|C Chain C, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|D Chain D, Crystal Structure Of Cysteine Synthase B
Length = 303
Score = 159 bits (403), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 115/193 (59%), Gaps = 2/193 (1%)
Query: 80 QLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSIL 139
Q IG TP+V L + + + KLE P SVKDR SMI +AE++G I PG +L
Sbjct: 6 QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPG-DVL 64
Query: 140 VEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQ 199
+E TSGNTGI LA IAA KGY++ L MP +MS ERR ++A+GAEL+L +GM+GA
Sbjct: 65 IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARD 124
Query: 200 KAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEIWEDTRGKVDXXXXXXXXXXXXXXXX 259
A E+ N +L QF+NP NP HY TTGPEIW+ T G++
Sbjct: 125 LALEMANRG-EGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVS 183
Query: 260 RYLKEKNPNIKVI 272
R+++E++ + ++
Sbjct: 184 RFMREQSKPVTIV 196
>pdb|2BHT|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|B Chain B, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|C Chain C, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|D Chain D, Crystal Structure Of O-Acetylserine Sulfhydrylase B
Length = 303
Score = 158 bits (400), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 114/193 (59%), Gaps = 2/193 (1%)
Query: 80 QLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSIL 139
Q IG TP+V L + + + KLE P SV DR SMI +AE++G I PG +L
Sbjct: 6 QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVXDRAALSMIVEAEKRGRIKPG-DVL 64
Query: 140 VEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQ 199
+E TSGNTGI LA IAA KGY++ L MP +MS ERR ++A+GAEL+L +GM+GA
Sbjct: 65 IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARD 124
Query: 200 KAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEIWEDTRGKVDXXXXXXXXXXXXXXXX 259
A E+ N +L QF+NP NPK HY TTGPEIW+ T G++
Sbjct: 125 LALEMANRG-EGKLLDQFNNPDNPKAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVS 183
Query: 260 RYLKEKNPNIKVI 272
+++E++ + ++
Sbjct: 184 EFMREQSKPVTIV 196
>pdb|2JC3|A Chain A, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|B Chain B, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|C Chain C, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|D Chain D, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|E Chain E, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|F Chain F, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|G Chain G, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|H Chain H, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
Length = 303
Score = 157 bits (398), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 84/193 (43%), Positives = 112/193 (58%), Gaps = 2/193 (1%)
Query: 80 QLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSIL 139
Q IG TP+V L I + I KLE P SVKDR SMI +AE++G I PG +L
Sbjct: 6 QTIGNTPLVKLQRIGPDNGSEIWVKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPG-DVL 64
Query: 140 VEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQ 199
+E TSGNTGI LA IAA KGY++ L MP +MS ERR ++A+GAEL+L +GM+GA
Sbjct: 65 IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARD 124
Query: 200 KAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEIWEDTRGKVDXXXXXXXXXXXXXXXX 259
A ++ +L QF+NP NP HY TTGPEIW T G++
Sbjct: 125 LA-LAMSERGEGKLLDQFNNPDNPYAHYTTTGPEIWRQTSGRITHFVSSMGTTGTITGVS 183
Query: 260 RYLKEKNPNIKVI 272
R+L+E+ + ++
Sbjct: 184 RFLREQEKPVTIV 196
>pdb|2V03|A Chain A, High Resolution Structure And Catalysis Of An O-
Acetylserine Sulfhydrylase
Length = 303
Score = 157 bits (398), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 114/193 (59%), Gaps = 2/193 (1%)
Query: 80 QLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSIL 139
Q IG TP+V L + + + KLE P SV DR SMI +AE++G I PG +L
Sbjct: 6 QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVXDRAALSMIVEAEKRGEIKPG-DVL 64
Query: 140 VEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQ 199
+E TSGNTGI LA IAA KGY++ L MP +MS ERR ++A+GAEL+L +GM+GA
Sbjct: 65 IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARD 124
Query: 200 KAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEIWEDTRGKVDXXXXXXXXXXXXXXXX 259
A E+ N +L QF+NP NP HY TTGPEIW+ T G++
Sbjct: 125 LALEMANRG-EGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVS 183
Query: 260 RYLKEKNPNIKVI 272
R+++E++ + ++
Sbjct: 184 RFMREQSKPVTIV 196
>pdb|3FCA|A Chain A, Genetic Incorporation Of A Metal-Ion Chelating Amino Acid
Into Proteins As Biophysical Probe
pdb|3FCA|B Chain B, Genetic Incorporation Of A Metal-Ion Chelating Amino Acid
Into Proteins As Biophysical Probe
Length = 291
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/164 (51%), Positives = 108/164 (65%), Gaps = 8/164 (4%)
Query: 80 QLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSIL 139
+LIG TP+V L++I + I KLE P SVKDR MI DAE++GL+ G +
Sbjct: 4 RLIGSTPIVRLDSID----SRIXLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNG---I 56
Query: 140 VEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQ 199
VEPTSGN GI +A I A +G+++ILTMP +MS+ERR +LK GAELVLT GMKGAV+
Sbjct: 57 VEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAVE 116
Query: 200 KAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEIWEDTRGKVD 243
KA EI T A+ML QF+NP N H TTGPEI + ++D
Sbjct: 117 KALEISRET-GAHMLNQFENPYNVYSHQFTTGPEILKQMDYQID 159
>pdb|1O58|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|B Chain B, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|C Chain C, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|D Chain D, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
Length = 303
Score = 149 bits (375), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/164 (51%), Positives = 108/164 (65%), Gaps = 8/164 (4%)
Query: 80 QLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSIL 139
+LIG TP+V L++I + I KLE P SVKDR MI DAE++GL+ G +
Sbjct: 16 RLIGSTPIVRLDSID----SRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNG---I 68
Query: 140 VEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQ 199
VEPTSGN GI +A I A +G+++ILTMP +MS+ERR +LK GAELVLT GMKGAV+
Sbjct: 69 VEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAVE 128
Query: 200 KAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEIWEDTRGKVD 243
KA EI T A+ML QF+NP N H TTGPEI + ++D
Sbjct: 129 KALEISRET-GAHMLNQFENPYNVYSHQFTTGPEILKQMDYQID 171
>pdb|1M54|A Chain A, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|B Chain B, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|C Chain C, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|D Chain D, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|E Chain E, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|F Chain F, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
Length = 363
Score = 144 bits (362), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 86/204 (42%), Positives = 113/204 (55%), Gaps = 12/204 (5%)
Query: 77 DVTQLIGKTPMVYLNTIVK--GCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITP 134
D+ + IG TPMV +N I K G + AK E SVKDRI MI DAE+ G + P
Sbjct: 36 DILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKP 95
Query: 135 GKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLT------ 188
G +I +EPTSGNTGIGLA AA +GY+ I+ MP MS E+ +L+A GAE+V T
Sbjct: 96 GDTI-IEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARF 154
Query: 189 DSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEIWEDTRGKVDXXXXX 248
DS + G A + N PN+++L Q+ N +NP HY+TT EI + GK+D
Sbjct: 155 DSPESHVGV---AWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVAS 211
Query: 249 XXXXXXXXXXXRYLKEKNPNIKVI 272
R LKEK P ++I
Sbjct: 212 VGTGGTITGIARKLKEKCPGCRII 235
>pdb|1JBQ|A Chain A, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|B Chain B, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|C Chain C, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|D Chain D, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|E Chain E, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|F Chain F, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
Length = 435
Score = 143 bits (361), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 85/204 (41%), Positives = 113/204 (55%), Gaps = 12/204 (5%)
Query: 77 DVTQLIGKTPMVYLNTIVK--GCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITP 134
D+ + IG TPMV +N I K G + AK E SVKDRI MI DAE+ G + P
Sbjct: 101 DILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKP 160
Query: 135 GKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLT------ 188
G +I +EPTSGNTGIGLA AA +GY+ I+ MP MS E+ +L+A GAE+V T
Sbjct: 161 GDTI-IEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARF 219
Query: 189 DSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEIWEDTRGKVDXXXXX 248
DS + G + + N PN+++L Q+ N +NP HY+TT EI + GK+D
Sbjct: 220 DSPESHVGVAWR---LKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVAS 276
Query: 249 XXXXXXXXXXXRYLKEKNPNIKVI 272
R LKEK P ++I
Sbjct: 277 VGTGGTITGIARKLKEKCPGCRII 300
>pdb|3BM5|A Chain A, Crystal Structure Of O-Acetyl-Serine Sulfhydrylase From
Entamoeba Histolytica In Complex With Cysteine
pdb|3BM5|B Chain B, Crystal Structure Of O-Acetyl-Serine Sulfhydrylase From
Entamoeba Histolytica In Complex With Cysteine
Length = 338
Score = 141 bits (356), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 76/177 (42%), Positives = 110/177 (62%), Gaps = 11/177 (6%)
Query: 74 IAEDVTQLIGKTPMVYLNTIV------KGCVANIAAKLEIMEPCCSVKDRIGFSMIADAE 127
I ++ + IG TP+V L+ + KG I KLE P SVKDR+GF+++ A
Sbjct: 12 IYHNILETIGGTPLVELHGVTEHPRIKKGT--RILVKLEYFNPMSSVKDRVGFNIVYQAI 69
Query: 128 QKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVL 187
+ G + PG I +E TSGNTGI L A GY++ + MP++MS+ER++++KAFGAEL+L
Sbjct: 70 KDGRLKPGMEI-IESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELIL 128
Query: 188 TDSAKGMKGAVQKAEEILNSTPNAYML-QQFDNPANPKIHYETTGPEIWEDTRGKVD 243
T+ KGM GA+++ +++ P Y + QF NP N H+ T EIWEDT G+VD
Sbjct: 129 TEGKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHHYTAN-EIWEDTDGEVD 184
>pdb|2PQM|A Chain A, Crystal Structure Of Cysteine Synthase (Oass) From
Entamoeba Histolytica At 1.86 A Resolution
pdb|2PQM|B Chain B, Crystal Structure Of Cysteine Synthase (Oass) From
Entamoeba Histolytica At 1.86 A Resolution
Length = 343
Score = 141 bits (355), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 76/177 (42%), Positives = 110/177 (62%), Gaps = 11/177 (6%)
Query: 74 IAEDVTQLIGKTPMVYLNTIV------KGCVANIAAKLEIMEPCCSVKDRIGFSMIADAE 127
I ++ + IG TP+V L+ + KG I KLE P SVKDR+GF+++ A
Sbjct: 13 IYHNILETIGGTPLVELHGVTEHPRIKKGT--RILVKLEYFNPMSSVKDRVGFNIVYQAI 70
Query: 128 QKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVL 187
+ G + PG I +E TSGNTGI L A GY++ + MP++MS+ER++++KAFGAEL+L
Sbjct: 71 KDGRLKPGMEI-IESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELIL 129
Query: 188 TDSAKGMKGAVQKAEEILNSTPNAYML-QQFDNPANPKIHYETTGPEIWEDTRGKVD 243
T+ KGM GA+++ +++ P Y + QF NP N H+ T EIWEDT G+VD
Sbjct: 130 TEGKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHHYTAN-EIWEDTDGEVD 185
>pdb|3PC2|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila
pdb|3PC3|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Aminoacrylate
pdb|3PC4|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Serine
Length = 527
Score = 137 bits (346), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 81/208 (38%), Positives = 117/208 (56%), Gaps = 12/208 (5%)
Query: 73 NIAEDVTQLIGKTPMVYLNTI--VKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKG 130
I ++ ++IG TP+V LN I G + AK E + P SVKDRIG+ M+ DAE++G
Sbjct: 49 QITPNILEVIGCTPLVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQDAEEQG 108
Query: 131 LITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLT-- 188
L+ PG +I +EPTSGNTGIGLA A KGYK I+ MP MS E+ L+ GA+++ T
Sbjct: 109 LLKPGYTI-IEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPT 167
Query: 189 ----DSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEIWEDTRGKVDX 244
DS +G+ + A+++ TPN+ +L Q+ N NP HY+ T EI KVD
Sbjct: 168 EAAYDSPEGL---IYVAQQLQRETPNSIVLDQYRNAGNPLAHYDGTAAEILWQLDNKVDM 224
Query: 245 XXXXXXXXXXXXXXXRYLKEKNPNIKVI 272
R +KE+ P+ +++
Sbjct: 225 IVVSAGTAGTISGIGRKIKEQVPSCQIV 252
>pdb|3DWG|A Chain A, Crystal Structure Of A Sulfur Carrier Protein Complex
Found In The Cysteine Biosynthetic Pathway Of
Mycobacterium Tuberculosis
pdb|3DWG|B Chain B, Crystal Structure Of A Sulfur Carrier Protein Complex
Found In The Cysteine Biosynthetic Pathway Of
Mycobacterium Tuberculosis
Length = 325
Score = 131 bits (330), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 110/204 (53%), Gaps = 9/204 (4%)
Query: 76 EDVTQLIGKTPMVYLNTIV-------KGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQ 128
+ + Q +G TP+V L + G + AKLE P S+KDR MI AE
Sbjct: 7 DSLLQALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEA 66
Query: 129 KGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLT 188
GL+ PG +IL EPTSGNTGI LA A KGY+LI MP + S+ERR LL+ +GA+++ +
Sbjct: 67 DGLLRPGATIL-EPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFS 125
Query: 189 DSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEIWEDTRGKVDXXXXX 248
+ G AV A+E+ + P+ ML Q+ NPAN HY TGPE+ D ++
Sbjct: 126 AAEGGSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADLP-EITHFVAG 184
Query: 249 XXXXXXXXXXXRYLKEKNPNIKVI 272
R+L+E N+K++
Sbjct: 185 LGTTGTLMGTGRFLREHVANVKIV 208
>pdb|3DWI|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cysm, The
Cysteine Synthase B
pdb|3DWI|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Cysm, The
Cysteine Synthase B
Length = 323
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/204 (37%), Positives = 109/204 (53%), Gaps = 9/204 (4%)
Query: 76 EDVTQLIGKTPMVYLNTIV-------KGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQ 128
+ + Q +G TP+V L + G + AKLE P S+KDR MI AE
Sbjct: 5 DSLLQALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEA 64
Query: 129 KGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLT 188
GL+ PG +IL EPTSGNTGI LA A KGY+LI MP + S+ERR LL+ +GA+++ +
Sbjct: 65 DGLLRPGATIL-EPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFS 123
Query: 189 DSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEIWEDTRGKVDXXXXX 248
+ G AV A+E+ + P+ ML Q+ NPAN HY TGPE+ D ++
Sbjct: 124 AAEGGSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADLP-EITHFVAG 182
Query: 249 XXXXXXXXXXXRYLKEKNPNIKVI 272
R+L+E N+ ++
Sbjct: 183 LGTTGTLMGTGRFLREHVANVAIV 206
>pdb|3DKI|A Chain A, 2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobacterium
Tuberculosis An O-Phosphoserine Dependent Cysteine
Synthase
pdb|3DKI|B Chain B, 2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobacterium
Tuberculosis An O-Phosphoserine Dependent Cysteine
Synthase
pdb|3FGP|A Chain A, 2.05 A Crystal Structure Of Cysm From Mycobacterium
Tuberculosis - Open And Closed Conformations
pdb|3FGP|B Chain B, 2.05 A Crystal Structure Of Cysm From Mycobacterium
Tuberculosis - Open And Closed Conformations
Length = 326
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/204 (37%), Positives = 109/204 (53%), Gaps = 9/204 (4%)
Query: 76 EDVTQLIGKTPMVYLNTIV-------KGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQ 128
+ + Q +G TP+V L + G + AKLE P S+ DR MI AE
Sbjct: 8 DSLLQALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIXDRPAVRMIEQAEA 67
Query: 129 KGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLT 188
GL+ PG +IL EPTSGNTGI LA A KGY+LI MP + S+ERR LL+ +GA+++ +
Sbjct: 68 DGLLRPGATIL-EPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFS 126
Query: 189 DSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEIWEDTRGKVDXXXXX 248
+ G AV A+E+ + P+ ML Q+ NPAN HY TGPE+ D ++
Sbjct: 127 AAEGGSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADLP-EITHFVAG 185
Query: 249 XXXXXXXXXXXRYLKEKNPNIKVI 272
R+L+E N+K++
Sbjct: 186 LGTTGTLMGTGRFLREHVANVKIV 209
>pdb|1WKV|A Chain A, Crystal Structure Of O-Phosphoserine Sulfhydrylase
pdb|1WKV|B Chain B, Crystal Structure Of O-Phosphoserine Sulfhydrylase
pdb|3VSA|A Chain A, Crystal Structure Of O-Phosphoserine Sulfhydrylase Without
Acetate
pdb|3VSA|B Chain B, Crystal Structure Of O-Phosphoserine Sulfhydrylase Without
Acetate
Length = 389
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 9/139 (6%)
Query: 104 KLEIMEP-CCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKL 162
KLE P SVKDR +I+ ++ + G S++ + TS N G+ L+ +A GY+
Sbjct: 115 KLEWYNPFSLSVKDRPAVEIISRLSRR--VEKG-SLVADATSSNFGVALSAVARLYGYRA 171
Query: 163 ILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQ--QFDNP 220
+ +P + ++L + GA++++ A V ++ + N + QF N
Sbjct: 172 RVYLPGAAEEFGKLLPRLLGAQVIVDPEA---PSTVHLLPRVMKDSKNEGFVHVNQFYND 228
Query: 221 ANPKIHYETTGPEIWEDTR 239
AN + H T EI+ +R
Sbjct: 229 ANFEAHMRGTAREIFVQSR 247
>pdb|3VSC|A Chain A, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Phospho-L-Serine
pdb|3VSC|B Chain B, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Phospho-L-Serine
pdb|3VSD|A Chain A, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Acetyl-L-Serine
pdb|3VSD|B Chain B, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Acetyl-L-Serine
Length = 389
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 9/139 (6%)
Query: 104 KLEIMEP-CCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKL 162
KLE P SV DR +I+ ++ + G S++ + TS N G+ L+ +A GY+
Sbjct: 115 KLEWYNPFSLSVADRPAVEIISRLSRR--VEKG-SLVADATSSNFGVALSAVARLYGYRA 171
Query: 163 ILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQ--QFDNP 220
+ +P + ++L + GA++++ A V ++ + N + QF N
Sbjct: 172 RVYLPGAAEEFGKLLPRLLGAQVIVDPEA---PSTVHLLPRVMKDSKNEGFVHVNQFYND 228
Query: 221 ANPKIHYETTGPEIWEDTR 239
AN + H T EI+ +R
Sbjct: 229 ANFEAHMRGTAREIFVQSR 247
>pdb|1TDJ|A Chain A, Threonine Deaminase (Biosynthetic) From E. Coli
Length = 514
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 12/91 (13%)
Query: 101 IAAKLEIMEPCCSVKDRIGFSMIAD--AEQK--GLITPGKSILVEPTSGNTGIGLAFIAA 156
I K E +P S K R ++M+A EQK G+IT ++GN G+AF +A
Sbjct: 48 ILVKREDRQPVHSFKLRGAYAMMAGLTEEQKAHGVITA--------SAGNHAQGVAFSSA 99
Query: 157 SKGYKLILTMPASMSLERRVLLKAFGAELVL 187
G K ++ MP + + + ++ FG E++L
Sbjct: 100 RLGVKALIVMPTATADIKVDAVRGFGGEVLL 130
>pdb|4D9I|A Chain A, Crystal Structure Of Holo Diaminopropionate Ammonia Lyase
From Escherichia Coli
pdb|4D9I|B Chain B, Crystal Structure Of Holo Diaminopropionate Ammonia Lyase
From Escherichia Coli
pdb|4D9N|A Chain A, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With D-Serine
pdb|4D9N|B Chain B, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With D-Serine
Length = 398
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKG-- 193
K T GN G G+A+ A G ++ MP + ER + GAE ++TD
Sbjct: 112 KMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTDMNYDDT 171
Query: 194 ----MKGAVQKAEEILNST 208
M+ A Q E++ T
Sbjct: 172 VRLTMQHAQQHGWEVVQDT 190
>pdb|4D9M|A Chain A, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With Aminoacrylate-Plp
Azomethine Reaction Intermediate
pdb|4D9M|B Chain B, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With Aminoacrylate-Plp
Azomethine Reaction Intermediate
Length = 398
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKG-- 193
K T GN G G+A+ A G ++ MP + ER + GAE ++TD
Sbjct: 112 KMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTDMNYDDT 171
Query: 194 ----MKGAVQKAEEILNST 208
M+ A Q E++ T
Sbjct: 172 VRLTMQHAQQHGWEVVQDT 190
>pdb|4D9K|A Chain A, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|D Chain D, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|B Chain B, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|C Chain C, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
Length = 398
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKG-- 193
K T GN G G+A+ A G ++ MP + ER + GAE ++TD
Sbjct: 112 KMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTDMNYDDT 171
Query: 194 ----MKGAVQKAEEILNST 208
M+ A Q E++ T
Sbjct: 172 VRLTMQHAQQHGWEVVQDT 190
>pdb|1VE5|A Chain A, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|B Chain B, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|C Chain C, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|D Chain D, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
Length = 311
Score = 34.7 bits (78), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 143 TSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAE 202
+SGN G+A+ A G K ++ MP S ++ +A+GAE+V D K + A
Sbjct: 72 SSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVV--DRGVTAKNREEVAR 129
Query: 203 EILNSTPNAYMLQQFDNP 220
+ T A ++ FD+P
Sbjct: 130 ALQEETGYA-LIHPFDDP 146
>pdb|3SS7|X Chain X, Crystal Structure Of Holo D-Serine Dehydratase From
Escherichia Coli At 1.55 A Resolution
pdb|3SS9|X Chain X, Crystal Structure Of Holo D-Serine Dehydratase From
Escherichia Coli At 1.97 A Resolution
Length = 442
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 143 TSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAE 202
++GN G+ + ++A G+K+ + M A ++ L++ G +V + G+ AV++
Sbjct: 167 STGNLGLSIGIMSARIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEQDYGV--AVEEGR 224
Query: 203 EILNSTPNAYMLQQFDNPANPKIHYETTGPEI 234
+ S PN + + +N + Y G +
Sbjct: 225 KAAQSDPNCFFIDD-ENSRTLFLGYSVAGQRL 255
>pdb|3R0Z|A Chain A, Crystal Structure Of Apo D-Serine Deaminase From
Salmonella Typhimurium
Length = 448
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 64/143 (44%), Gaps = 24/143 (16%)
Query: 113 SVKDRIG-FSMIADAE----QKGLITPGK--SILVEP--------------TSGNTGIGL 151
S+K R G + ++ AE + GL+T S+L+ P ++GN G+ +
Sbjct: 114 SIKARGGIYEVLTHAEKLALEAGLLTTDDDYSVLLSPEFKQFFSQYSIAVGSTGNLGLSI 173
Query: 152 AFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNA 211
++A G+K+ + M A ++ L++ G +V + G+ AV++ + S PN
Sbjct: 174 GIMSACIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEDDYGV--AVEQGRKAAQSDPNC 231
Query: 212 YMLQQFDNPANPKIHYETTGPEI 234
+ + +N + Y G +
Sbjct: 232 FFIDD-ENSRTLFLGYAVAGQRL 253
>pdb|4D9G|A Chain A, Crystal Structure Of Selenomethionine Incorporated Holo
Diaminopropionate Ammonia Lyase From Escherichia Coli
pdb|4D9G|B Chain B, Crystal Structure Of Selenomethionine Incorporated Holo
Diaminopropionate Ammonia Lyase From Escherichia Coli
Length = 398
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTD 189
K T GN G G+A+ A G ++ P + ER + GAE ++TD
Sbjct: 112 KXTFATTTDGNHGRGVAWAAQQLGQNAVIYXPKGSAQERVDAILNLGAECIVTD 165
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 32.0 bits (71), Expect = 0.39, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 129 KGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKA 180
+G + PG+S+L+ SG G IA S+G ++ T+ S E+R L+A
Sbjct: 1662 RGRMQPGESVLIHSGSGGVGQAAIAIALSRGCRVFTTVG---SAEKRAYLQA 1710
>pdb|2VCY|A Chain A, Crystal Structure Of 2-Enoyl Thioester Reductase Of Human
Fas Ii
pdb|2VCY|B Chain B, Crystal Structure Of 2-Enoyl Thioester Reductase Of Human
Fas Ii
Length = 344
Score = 30.8 bits (68), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 18/87 (20%)
Query: 108 MEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAF--IAASKGYK---L 162
+ PC + + M+ D EQ + PG S++ + N+G+G A IAA+ G + +
Sbjct: 137 VNPCTA------YRMLMDFEQ---LQPGDSVI--QNASNSGVGQAVIQIAAALGLRTINV 185
Query: 163 ILTMPASMSLERRVLLKAFGAELVLTD 189
+ P L R LK+ GAE V+T+
Sbjct: 186 VRDRPDIQKLSDR--LKSLGAEHVITE 210
>pdb|1ZSY|A Chain A, The Structure Of Human Mitochondrial 2-Enoyl Thioester
Reductase (Cgi- 63)
Length = 357
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 18/87 (20%)
Query: 108 MEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAF--IAASKGYK---L 162
+ PC + + M+ D EQ + PG S++ + N+G+G A IAA+ G + +
Sbjct: 150 VNPCTA------YRMLMDFEQ---LQPGDSVI--QNASNSGVGQAVIQIAAALGLRTINV 198
Query: 163 ILTMPASMSLERRVLLKAFGAELVLTD 189
+ P L R LK+ GAE V+T+
Sbjct: 199 VRDRPDIQKLSDR--LKSLGAEHVITE 223
>pdb|2QA2|A Chain A, Crystal Structure Of Cabe, An Aromatic Hydroxylase From
Angucycline Biosynthesis, Determined To 2.7 A Resolution
Length = 499
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 76 EDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGF--SMIADAEQKGLIT 133
+++ + GKT L +G + +IA E+ E DR+ + + DA +G ++
Sbjct: 404 QELVRAHGKTSTTELLHPARGVLLDIADDAEVREAATGWSDRVDIVTASLHDAPPQGPLS 463
Query: 134 PGKSILVEPTS 144
+++LV P
Sbjct: 464 DARAVLVRPDG 474
>pdb|1WYT|B Chain B, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Apo Form
pdb|1WYT|D Chain D, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Apo Form
pdb|1WYU|B Chain B, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Holo Form
pdb|1WYU|D Chain D, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Holo Form
pdb|1WYU|F Chain F, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Holo Form
pdb|1WYU|H Chain H, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Holo Form
pdb|1WYV|B Chain B, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Inhibitor-Bound Form
pdb|1WYV|D Chain D, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Inhibitor-Bound Form
pdb|1WYV|F Chain F, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Inhibitor-Bound Form
pdb|1WYV|H Chain H, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Inhibitor-Bound Form
Length = 474
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 18 ISKKSSLATLKLGYISPITAARRLKQNLYKVSYKPCNSVVCKAVSVKPQTGIEGLNIAED 77
+ K ++LA L Y+ + LK+ Y+V P + +P G L++A+
Sbjct: 342 LKKAAALAVLNARYLKEL-----LKEKGYRV---PYDGPSMHEFVAQPPEGFRALDLAKG 393
Query: 78 VTQLIGKTPMVYLNTIVK 95
+ +L P VY IVK
Sbjct: 394 LLELGFHPPTVYFPLIVK 411
>pdb|3R0X|A Chain A, Crystal Structure Of Selenomethionine Incorporated Apo
D-Serine Deaminase From Salmonella Tyhimurium
Length = 448
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 72/174 (41%), Gaps = 29/174 (16%)
Query: 65 PQTGIEGLNIAEDVTQLIGKTPMV---YLNTIVKGCVANIAAKLEIMEPCCSVKDRIG-F 120
PQT G I DV + + Y TI + + L I S+K R G +
Sbjct: 66 PQTAAAGGXIESDVVAIPAXQKRLEKEYGQTINGEXLLKKDSHLAI---SGSIKARGGIY 122
Query: 121 SMIADAE----QKGLITPGK--SILVEP--------------TSGNTGIGLAFIAASKGY 160
++ AE + GL+T S+L+ P ++GN G+ + +A G+
Sbjct: 123 EVLTHAEKLALEAGLLTTDDDYSVLLSPEFKQFFSQYSIAVGSTGNLGLSIGIXSACIGF 182
Query: 161 KLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYML 214
K+ + A ++ L++ G +V + G+ AV++ + S PN + +
Sbjct: 183 KVTVHXSADARAWKKAKLRSHGVTVVEYEDDYGV--AVEQGRKAAQSDPNCFFI 234
>pdb|3HMK|A Chain A, Crystal Structure Of Serine Racemase
pdb|3HMK|B Chain B, Crystal Structure Of Serine Racemase
pdb|3L6C|A Chain A, X-Ray Crystal Structure Of Rat Serine Racemase In Complex
Wi Malonate A Potent Inhibitor
pdb|3L6C|B Chain B, X-Ray Crystal Structure Of Rat Serine Racemase In Complex
Wi Malonate A Potent Inhibitor
Length = 339
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 11/113 (9%)
Query: 100 NIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLI---TPGK-SILVEPTSGNTGIGLAFIA 155
N+ K E+ + S K R + I +GLI GK +V +SGN G L + A
Sbjct: 41 NLFFKCELFQKTGSFKIRGALNAI-----RGLIPDTLEGKPKAVVTHSSGNHGQALTYAA 95
Query: 156 ASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNST 208
+G + +P + +++ ++A+GA +V ++ + + V A+ I+ T
Sbjct: 96 KLEGIPAYIVVPQTAPNCKKLAIQAYGASIVYSEPSDESRENV--AQRIIQET 146
>pdb|2D1F|A Chain A, Structure Of Mycobacterium Tuberculosis Threonine Synthase
pdb|2D1F|B Chain B, Structure Of Mycobacterium Tuberculosis Threonine Synthase
Length = 360
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 78 VTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSM-IADAEQKGLITPGK 136
VT L G TP++ + K I K+E + P S KDR G +M + DA + G+
Sbjct: 32 VTLLEGGTPLIAATNLSKQTGCTIHLKVEGLNPTGSFKDR-GMTMAVTDA-----LAHGQ 85
Query: 137 SILVEPTSGNT 147
++ ++GNT
Sbjct: 86 RAVLCASTGNT 96
>pdb|2NTN|A Chain A, Crystal Structure Of Maba-c60v/g139a/s144l
pdb|2NTN|B Chain B, Crystal Structure Of Maba-c60v/g139a/s144l
Length = 267
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 9/57 (15%)
Query: 136 KSILVEPTSGNTGIGLAFIA--ASKGYKLILTMPASMSLERRVLLKAFGAELVLTDS 190
+S+LV T GN GIGLA A+ G+K+ +T S + + FG E+ +TDS
Sbjct: 36 RSVLV--TGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPK-----GLFGVEVDVTDS 85
>pdb|1UZM|A Chain A, Maba From Mycobacterium Tuberculosis
pdb|1UZM|B Chain B, Maba From Mycobacterium Tuberculosis
pdb|1UZN|A Chain A, Maba From Mycobacterium Tuberculosis
pdb|1UZN|B Chain B, Maba From Mycobacterium Tuberculosis
Length = 247
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 9/57 (15%)
Query: 136 KSILVEPTSGNTGIGLAFIA--ASKGYKLILTMPASMSLERRVLLKAFGAELVLTDS 190
+S+LV T GN GIGLA A+ G+K+ +T S + + FG E+ +TDS
Sbjct: 16 RSVLV--TGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPK-----GLFGVEVDVTDS 65
>pdb|1V71|A Chain A, Crystal Structure Of S.pombe Serine Racemase
pdb|1WTC|A Chain A, Crystal Structure Of S.ponbe Serine Racemase Complex With
Amppcp
pdb|2ZPU|A Chain A, Crystal Structure Of Modified Serine Racemase From
S.Pombe.
pdb|2ZR8|A Chain A, Crystal Structure Of Modified Serine Racemase Complexed
With Serine
Length = 323
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 12/122 (9%)
Query: 75 AEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDR---IGFSMIADAEQK-G 130
+E + + KTP++ +T+ K VA + K E + + K R S + +A++K G
Sbjct: 17 SERIKKFANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLNEAQRKAG 76
Query: 131 LITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDS 190
++T +SGN +A A G + MP + K +G ++++ D
Sbjct: 77 VLTF--------SSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDR 128
Query: 191 AK 192
K
Sbjct: 129 YK 130
>pdb|3UNA|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With Nad Bound
pdb|3UNA|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With Nad Bound
pdb|3UNC|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase To
1.65a Resolution
pdb|3UNC|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase To
1.65a Resolution
pdb|3UNI|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With Nadh Bound
pdb|3UNI|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With Nadh Bound
Length = 1332
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%)
Query: 167 PASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIH 226
P M RR L +F + LT K K + K ++ + +A +L Q D PAN ++
Sbjct: 501 PGGMIEFRRTLTLSFFFKFYLTVLKKLGKDSKDKCGKLDPTYTSATLLFQKDPPANIQLF 560
Query: 227 YETTGPEIWEDTRGK 241
E + EDT G+
Sbjct: 561 QEVPNGQSKEDTVGR 575
>pdb|2DFV|A Chain A, Hyperthermophilic Threonine Dehydrogenase From Pyrococcus
Horikoshii
pdb|2DFV|B Chain B, Hyperthermophilic Threonine Dehydrogenase From Pyrococcus
Horikoshii
pdb|2DFV|C Chain C, Hyperthermophilic Threonine Dehydrogenase From Pyrococcus
Horikoshii
Length = 347
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 135 GKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLT 188
GKS+L+ +G+A AS Y +I++ P+ RR L K GA+ V+
Sbjct: 167 GKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDF---RRELAKKVGADYVIN 217
>pdb|2D8A|A Chain A, Crystal Structure Of Ph0655 From Pyrococcus Horikoshii Ot3
Length = 348
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 135 GKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLT 188
GKS+L+ +G+A AS Y +I++ P+ RR L K GA+ V+
Sbjct: 168 GKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDF---RRELAKKVGADYVIN 218
>pdb|3L6B|A Chain A, X-Ray Crystal Structure Of Human Serine Racemase In
Complex Malonate A Potent Inhibitor
Length = 346
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 100 NIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKG 159
N+ K E+ + S K R + + L K+++ +SGN G L + A +G
Sbjct: 41 NLFFKCELFQKTGSFKIRGALNAVRSLVPDALERKPKAVVTH-SSGNHGQALTYAAKLEG 99
Query: 160 YKLILTMPASMSLERRVLLKAFGAELV 186
+ +P + +++ ++A+GA +V
Sbjct: 100 IPAYIVVPQTAPDCKKLAIQAYGASIV 126
>pdb|3L6R|A Chain A, The Structure Of Mammalian Serine Racemase: Evidence For
Conformational Changes Upon Inhibitor Binding
Length = 346
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 32/62 (51%)
Query: 139 LVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAV 198
+V +SGN G L + A +G + +P + +++ ++A+GA +V + + + V
Sbjct: 79 VVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSDESRENV 138
Query: 199 QK 200
K
Sbjct: 139 AK 140
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,165,706
Number of Sequences: 62578
Number of extensions: 288073
Number of successful extensions: 768
Number of sequences better than 100.0: 67
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 674
Number of HSP's gapped (non-prelim): 68
length of query: 311
length of database: 14,973,337
effective HSP length: 99
effective length of query: 212
effective length of database: 8,778,115
effective search space: 1860960380
effective search space used: 1860960380
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)