Query 021570
Match_columns 311
No_of_seqs 261 out of 2000
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 04:01:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021570.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021570hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK07591 threonine synthase; V 100.0 1.4E-55 3E-60 430.3 26.2 277 10-303 14-317 (421)
2 PRK08197 threonine synthase; V 100.0 2.7E-55 5.8E-60 425.4 26.1 273 14-303 7-307 (394)
3 PRK06260 threonine synthase; V 100.0 8.1E-54 1.7E-58 415.4 24.4 267 16-302 5-293 (397)
4 PLN02569 threonine synthase 100.0 1.6E-52 3.5E-57 413.1 28.6 281 10-303 45-366 (484)
5 PRK05638 threonine synthase; V 100.0 8.8E-53 1.9E-57 413.2 25.1 230 53-303 44-283 (442)
6 PRK08329 threonine synthase; V 100.0 2E-52 4.3E-57 399.0 25.4 260 16-303 3-271 (347)
7 PRK06450 threonine synthase; V 100.0 2E-52 4.4E-57 397.2 24.9 251 16-303 5-270 (338)
8 PLN02565 cysteine synthase 100.0 8.1E-52 1.8E-56 390.9 27.4 231 76-308 7-237 (322)
9 COG1171 IlvA Threonine dehydra 100.0 1.6E-52 3.5E-57 392.3 20.1 229 69-304 10-246 (347)
10 PLN03013 cysteine synthase 100.0 1.7E-51 3.6E-56 398.2 26.8 226 74-301 113-338 (429)
11 PRK06352 threonine synthase; V 100.0 1.6E-51 3.5E-56 393.2 23.3 233 53-302 4-243 (351)
12 PRK02991 D-serine dehydratase; 100.0 2.2E-51 4.9E-56 400.9 22.0 266 30-305 23-345 (441)
13 COG0031 CysK Cysteine synthase 100.0 2E-50 4.3E-55 372.1 25.1 222 77-302 4-227 (300)
14 PLN00011 cysteine synthase 100.0 5.7E-50 1.2E-54 378.7 27.7 228 76-305 9-236 (323)
15 PRK08526 threonine dehydratase 100.0 1.7E-50 3.7E-55 392.1 22.7 226 69-303 5-237 (403)
16 TIGR02035 D_Ser_am_lyase D-ser 100.0 2.2E-50 4.8E-55 392.6 23.0 226 78-306 64-341 (431)
17 PLN02556 cysteine synthase/L-3 100.0 9.7E-50 2.1E-54 382.5 26.2 226 74-301 49-274 (368)
18 PLN02970 serine racemase 100.0 3.6E-50 7.9E-55 380.8 22.5 223 69-300 12-241 (328)
19 PRK11761 cysM cysteine synthas 100.0 9.8E-50 2.1E-54 372.9 24.9 206 75-282 3-208 (296)
20 PRK06382 threonine dehydratase 100.0 5.5E-50 1.2E-54 389.5 22.9 226 70-304 11-243 (406)
21 PRK08198 threonine dehydratase 100.0 8E-50 1.7E-54 388.3 23.7 226 69-303 7-239 (404)
22 TIGR01139 cysK cysteine syntha 100.0 4.7E-49 1E-53 368.5 27.6 222 79-304 2-224 (298)
23 PRK07476 eutB threonine dehydr 100.0 8.2E-50 1.8E-54 377.5 22.7 222 70-300 5-233 (322)
24 PRK10717 cysteine synthase A; 100.0 3.4E-49 7.3E-54 374.5 26.9 229 75-305 4-244 (330)
25 PRK08638 threonine dehydratase 100.0 8E-50 1.7E-54 378.9 22.5 227 68-303 11-244 (333)
26 PRK06721 threonine synthase; R 100.0 2E-49 4.3E-54 379.0 25.3 233 53-302 4-243 (352)
27 PRK12483 threonine dehydratase 100.0 1.2E-49 2.6E-54 395.3 24.6 220 76-303 29-255 (521)
28 TIGR01136 cysKM cysteine synth 100.0 6.8E-49 1.5E-53 367.6 27.8 207 79-286 2-208 (299)
29 cd06447 D-Ser-dehyd D-Serine d 100.0 1.2E-49 2.6E-54 384.7 23.2 223 80-305 48-322 (404)
30 PRK07409 threonine synthase; V 100.0 1.9E-49 4.1E-54 379.4 24.3 233 53-302 7-247 (353)
31 TIGR01138 cysM cysteine syntha 100.0 6.9E-49 1.5E-53 366.2 25.6 203 78-282 2-204 (290)
32 cd01563 Thr-synth_1 Threonine 100.0 3.2E-49 7E-54 373.5 23.4 230 55-302 1-247 (324)
33 PRK06110 hypothetical protein; 100.0 2.3E-49 5E-54 374.4 22.4 225 70-303 7-238 (322)
34 PRK06608 threonine dehydratase 100.0 4E-49 8.6E-54 374.9 22.9 228 67-303 6-241 (338)
35 TIGR02991 ectoine_eutB ectoine 100.0 5.1E-49 1.1E-53 371.3 22.8 221 70-299 5-232 (317)
36 TIGR02079 THD1 threonine dehyd 100.0 4.7E-49 1E-53 383.1 22.7 225 72-304 4-238 (409)
37 PRK07048 serine/threonine dehy 100.0 6.3E-49 1.4E-53 371.3 23.0 225 69-302 9-240 (321)
38 cd01561 CBS_like CBS_like: Thi 100.0 5E-48 1.1E-52 360.3 27.7 217 83-302 1-219 (291)
39 PLN02550 threonine dehydratase 100.0 9.4E-49 2E-53 391.5 23.8 219 77-303 102-327 (591)
40 PRK08639 threonine dehydratase 100.0 5.6E-49 1.2E-53 384.0 21.3 229 68-304 9-249 (420)
41 cd06448 L-Ser-dehyd Serine deh 100.0 1.8E-48 4E-53 367.4 23.3 217 84-304 1-227 (316)
42 TIGR01127 ilvA_1Cterm threonin 100.0 1.4E-48 3.1E-53 376.8 22.8 211 85-304 1-218 (380)
43 TIGR03844 cysteate_syn cysteat 100.0 1.9E-48 4.2E-53 376.8 23.1 265 16-302 4-303 (398)
44 TIGR01124 ilvA_2Cterm threonin 100.0 3.6E-48 7.7E-53 384.4 24.8 220 76-303 9-235 (499)
45 PRK08813 threonine dehydratase 100.0 3.4E-48 7.5E-53 368.3 23.5 215 69-302 24-244 (349)
46 PRK07334 threonine dehydratase 100.0 2.7E-48 5.9E-53 377.4 22.0 226 69-303 8-238 (403)
47 PLN02356 phosphateglycerate ki 100.0 1.1E-47 2.5E-52 371.2 26.1 229 76-305 45-329 (423)
48 KOG1250 Threonine/serine dehyd 100.0 2.6E-48 5.6E-53 362.6 20.7 225 71-303 53-284 (457)
49 PRK09224 threonine dehydratase 100.0 1.2E-47 2.5E-52 381.8 25.0 220 76-303 12-238 (504)
50 PRK06815 hypothetical protein; 100.0 9.9E-48 2.2E-52 362.6 21.2 224 69-301 5-235 (317)
51 cd01562 Thr-dehyd Threonine de 100.0 2.5E-47 5.3E-52 357.1 22.4 224 71-303 4-234 (304)
52 PRK08246 threonine dehydratase 100.0 5.1E-47 1.1E-51 356.7 22.9 222 67-303 6-234 (310)
53 TIGR00260 thrC threonine synth 100.0 2.9E-47 6.3E-52 360.7 20.7 229 55-302 1-249 (328)
54 TIGR01137 cysta_beta cystathio 100.0 4.3E-46 9.2E-51 366.9 26.1 222 78-301 5-233 (454)
55 PRK06381 threonine synthase; V 100.0 1.1E-45 2.3E-50 348.9 24.3 198 79-285 10-216 (319)
56 PRK08206 diaminopropionate amm 100.0 8.2E-46 1.8E-50 359.2 23.3 232 69-304 27-300 (399)
57 KOG1252 Cystathionine beta-syn 100.0 3.1E-46 6.8E-51 343.6 17.2 227 73-301 41-272 (362)
58 TIGR01415 trpB_rel pyridoxal-p 100.0 8.1E-45 1.8E-49 353.2 24.6 266 11-305 15-335 (419)
59 TIGR01747 diampropi_NH3ly diam 100.0 6.7E-45 1.5E-49 349.9 23.7 226 74-304 13-281 (376)
60 KOG1251 Serine racemase [Signa 100.0 3.4E-45 7.3E-50 323.2 16.1 232 68-309 9-247 (323)
61 TIGR03528 2_3_DAP_am_ly diamin 100.0 1.6E-43 3.4E-48 342.5 22.8 220 81-304 38-300 (396)
62 PRK12391 tryptophan synthase s 100.0 4.7E-43 1E-47 341.4 25.6 248 11-285 25-301 (427)
63 cd00640 Trp-synth-beta_II Tryp 100.0 7.4E-43 1.6E-47 317.3 24.5 187 85-276 1-188 (244)
64 COG0498 ThrC Threonine synthas 100.0 2.4E-42 5.2E-47 332.5 17.9 272 16-304 7-301 (411)
65 PRK13028 tryptophan synthase s 100.0 1.9E-41 4.1E-46 327.4 23.9 225 76-305 53-319 (402)
66 cd06446 Trp-synth_B Tryptophan 100.0 2.4E-41 5.2E-46 324.8 21.3 245 38-303 3-289 (365)
67 PRK04346 tryptophan synthase s 100.0 4.2E-41 9.2E-46 324.5 22.5 224 77-305 50-315 (397)
68 PLN02618 tryptophan synthase, 100.0 7E-41 1.5E-45 323.7 23.3 227 74-305 55-328 (410)
69 TIGR00263 trpB tryptophan synt 100.0 1.1E-40 2.3E-45 322.2 23.4 219 80-303 45-305 (385)
70 PRK03910 D-cysteine desulfhydr 100.0 2.5E-40 5.5E-45 313.9 20.4 219 76-300 7-243 (331)
71 TIGR01275 ACC_deam_rel pyridox 100.0 1.9E-40 4.2E-45 312.0 19.1 212 82-300 5-229 (311)
72 PF00291 PALP: Pyridoxal-phosp 100.0 1.5E-40 3.2E-45 310.4 17.8 211 78-301 1-231 (306)
73 PRK13802 bifunctional indole-3 100.0 9.8E-40 2.1E-44 331.8 25.1 228 76-308 317-594 (695)
74 TIGR01274 ACC_deam 1-aminocycl 100.0 1.1E-39 2.4E-44 310.2 20.9 220 76-301 6-249 (337)
75 PRK12390 1-aminocyclopropane-1 100.0 1.8E-39 4E-44 308.7 20.2 220 76-301 7-250 (337)
76 KOG1481 Cysteine synthase [Ami 100.0 1.3E-39 2.8E-44 292.5 15.7 230 76-306 41-294 (391)
77 cd06449 ACCD Aminocyclopropane 100.0 1.1E-38 2.5E-43 299.6 20.9 195 85-285 1-218 (307)
78 PRK13803 bifunctional phosphor 100.0 1.6E-38 3.4E-43 322.4 22.2 224 77-305 263-527 (610)
79 PRK14045 1-aminocyclopropane-1 100.0 3E-37 6.4E-42 292.7 20.7 199 75-279 12-222 (329)
80 COG1350 Predicted alternative 100.0 2.4E-31 5.1E-36 243.6 15.0 251 10-285 24-302 (432)
81 COG3048 DsdA D-serine dehydrat 100.0 7.9E-32 1.7E-36 244.8 11.4 270 28-307 24-350 (443)
82 COG0133 TrpB Tryptophan syntha 100.0 8.2E-29 1.8E-33 226.5 16.3 226 78-308 49-315 (396)
83 PRK09225 threonine synthase; V 99.9 1.5E-26 3.2E-31 227.4 20.3 205 84-305 88-315 (462)
84 cd01560 Thr-synth_2 Threonine 99.9 2E-25 4.4E-30 219.4 21.3 204 84-305 87-318 (460)
85 COG2515 Acd 1-aminocyclopropan 99.9 5.2E-24 1.1E-28 194.5 18.2 205 75-285 6-224 (323)
86 KOG1395 Tryptophan synthase be 99.9 1.2E-24 2.6E-29 201.1 12.5 224 78-306 115-381 (477)
87 PF03808 Glyco_tran_WecB: Glyc 91.0 1.6 3.5E-05 37.5 8.6 121 148-275 13-134 (172)
88 PF05368 NmrA: NmrA-like famil 90.6 4.8 0.0001 35.6 11.8 99 139-247 2-100 (233)
89 PRK10669 putative cation:proto 87.5 11 0.00023 38.6 13.0 52 137-191 418-469 (558)
90 cd06533 Glyco_transf_WecG_TagA 87.3 5.7 0.00012 34.0 9.4 119 148-275 11-132 (171)
91 PRK03659 glutathione-regulated 87.2 11 0.00024 39.0 13.0 52 137-191 401-452 (601)
92 PRK03562 glutathione-regulated 86.8 12 0.00025 39.0 13.0 52 137-191 401-452 (621)
93 PF00764 Arginosuc_synth: Argi 86.6 5.5 0.00012 38.9 9.8 127 139-273 1-138 (388)
94 PF09837 DUF2064: Uncharacteri 86.1 15 0.00032 29.8 10.8 97 151-253 2-99 (122)
95 TIGR03201 dearomat_had 6-hydro 86.0 9 0.0002 36.2 11.0 59 126-188 158-216 (349)
96 cd08230 glucose_DH Glucose deh 85.7 5.5 0.00012 37.7 9.4 54 132-186 170-223 (355)
97 cd08294 leukotriene_B4_DH_like 84.4 13 0.00028 34.3 11.0 60 128-190 137-196 (329)
98 TIGR02819 fdhA_non_GSH formald 83.6 14 0.0003 36.0 11.2 58 127-187 178-235 (393)
99 cd01075 NAD_bind_Leu_Phe_Val_D 83.4 13 0.00028 32.7 10.0 68 116-186 6-76 (200)
100 TIGR03366 HpnZ_proposed putati 83.3 8.5 0.00018 35.1 9.2 53 132-187 118-170 (280)
101 COG0604 Qor NADPH:quinone redu 82.1 12 0.00027 35.4 10.0 59 128-189 136-194 (326)
102 PRK09424 pntA NAD(P) transhydr 82.0 34 0.00074 34.8 13.5 51 137-190 166-216 (509)
103 COG1064 AdhP Zn-dependent alco 80.6 10 0.00022 36.5 8.7 63 125-191 157-219 (339)
104 TIGR00670 asp_carb_tr aspartat 80.6 6.5 0.00014 37.1 7.4 61 128-190 144-209 (301)
105 cd08274 MDR9 Medium chain dehy 79.6 18 0.00039 33.7 10.1 59 126-188 169-227 (350)
106 TIGR00696 wecB_tagA_cpsF bacte 79.5 18 0.00039 31.3 9.3 97 148-253 13-112 (177)
107 KOG0023 Alcohol dehydrogenase, 79.5 8.1 0.00018 36.9 7.5 60 127-190 175-234 (360)
108 PF07279 DUF1442: Protein of u 79.2 25 0.00055 31.6 10.2 59 122-183 31-94 (218)
109 PF00107 ADH_zinc_N: Zinc-bind 79.1 14 0.00029 29.3 8.0 39 148-189 3-41 (130)
110 COG0800 Eda 2-keto-3-deoxy-6-p 78.8 37 0.0008 30.4 11.1 92 121-224 29-120 (211)
111 TIGR02825 B4_12hDH leukotriene 78.4 26 0.00057 32.4 10.8 58 128-188 132-189 (325)
112 KOG0025 Zn2+-binding dehydroge 78.2 16 0.00035 34.5 8.9 89 100-191 124-218 (354)
113 cd08281 liver_ADH_like1 Zinc-d 78.1 22 0.00048 33.9 10.4 58 128-188 185-242 (371)
114 cd08256 Zn_ADH2 Alcohol dehydr 78.0 28 0.00061 32.6 11.0 59 127-188 167-225 (350)
115 TIGR03451 mycoS_dep_FDH mycoth 77.8 33 0.00071 32.4 11.5 58 127-187 169-226 (358)
116 cd08295 double_bond_reductase_ 77.7 28 0.00061 32.5 10.9 57 128-187 145-202 (338)
117 PF01210 NAD_Gly3P_dh_N: NAD-d 77.2 4.7 0.0001 33.9 4.9 39 139-180 2-40 (157)
118 PF02826 2-Hacid_dh_C: D-isome 77.0 23 0.00049 30.4 9.2 105 137-264 37-143 (178)
119 COG1063 Tdh Threonine dehydrog 76.9 70 0.0015 30.5 14.2 52 138-191 171-223 (350)
120 TIGR01064 pyruv_kin pyruvate k 76.6 61 0.0013 32.6 13.3 122 151-278 262-406 (473)
121 cd08239 THR_DH_like L-threonin 76.2 48 0.001 30.8 12.0 60 126-188 155-214 (339)
122 cd08293 PTGR2 Prostaglandin re 76.0 38 0.00083 31.5 11.3 60 128-190 146-209 (345)
123 PF00106 adh_short: short chai 75.9 22 0.00047 29.1 8.6 68 137-204 2-73 (167)
124 PRK13656 trans-2-enoyl-CoA red 75.7 45 0.00097 32.8 11.7 56 108-166 15-73 (398)
125 cd08233 butanediol_DH_like (2R 75.6 34 0.00073 32.1 10.8 59 127-188 165-223 (351)
126 PF01041 DegT_DnrJ_EryC1: DegT 75.5 7 0.00015 37.4 6.2 88 137-224 41-130 (363)
127 PLN03154 putative allyl alcoho 75.5 38 0.00083 32.0 11.2 58 128-188 152-210 (348)
128 PF00070 Pyr_redox: Pyridine n 74.9 15 0.00032 26.8 6.6 49 139-187 2-59 (80)
129 TIGR02822 adh_fam_2 zinc-bindi 74.9 15 0.00032 34.5 8.1 58 126-187 157-214 (329)
130 cd08296 CAD_like Cinnamyl alco 74.7 32 0.00069 32.0 10.3 53 131-187 160-212 (333)
131 PRK12823 benD 1,6-dihydroxycyc 74.7 21 0.00045 31.8 8.8 56 136-191 9-64 (260)
132 COG1751 Uncharacterized conser 74.7 26 0.00056 29.9 8.4 75 110-189 7-90 (186)
133 PRK14030 glutamate dehydrogena 74.3 19 0.00041 35.9 8.9 60 115-174 207-274 (445)
134 TIGR03538 DapC_gpp succinyldia 74.3 42 0.00091 32.2 11.3 109 109-222 62-179 (393)
135 PRK09880 L-idonate 5-dehydroge 73.9 27 0.00059 32.8 9.7 60 126-188 161-220 (343)
136 PRK12743 oxidoreductase; Provi 73.6 20 0.00042 32.0 8.3 55 137-191 4-60 (256)
137 PRK08993 2-deoxy-D-gluconate 3 73.5 34 0.00074 30.4 9.9 55 136-191 11-65 (253)
138 cd08231 MDR_TM0436_like Hypoth 73.5 75 0.0016 29.8 12.7 55 129-187 172-227 (361)
139 PRK08703 short chain dehydroge 73.2 44 0.00096 29.2 10.4 31 136-166 7-37 (239)
140 PRK12481 2-deoxy-D-gluconate 3 73.1 29 0.00063 30.9 9.3 55 136-191 9-63 (251)
141 cd08292 ETR_like_2 2-enoyl thi 72.9 35 0.00076 31.2 10.1 59 126-187 131-189 (324)
142 PRK13394 3-hydroxybutyrate deh 72.6 27 0.00058 30.9 8.9 56 136-191 8-64 (262)
143 PF00107 ADH_zinc_N: Zinc-bind 72.6 19 0.00042 28.3 7.3 85 175-278 7-92 (130)
144 cd08287 FDH_like_ADH3 formalde 72.5 45 0.00097 31.0 10.8 56 129-187 163-218 (345)
145 PRK06935 2-deoxy-D-gluconate 3 72.4 30 0.00065 30.8 9.2 66 136-201 16-81 (258)
146 PRK08628 short chain dehydroge 72.4 28 0.00061 30.9 9.0 66 136-201 8-73 (258)
147 PRK09147 succinyldiaminopimela 72.3 50 0.0011 31.7 11.3 80 110-191 64-147 (396)
148 TIGR01832 kduD 2-deoxy-D-gluco 71.9 32 0.00069 30.2 9.2 65 136-201 6-70 (248)
149 PRK10309 galactitol-1-phosphat 71.8 66 0.0014 30.1 11.8 58 127-187 153-210 (347)
150 PRK07109 short chain dehydroge 71.8 19 0.00042 34.0 8.1 68 136-203 9-77 (334)
151 cd08301 alcohol_DH_plants Plan 71.5 89 0.0019 29.6 12.7 57 128-187 181-237 (369)
152 PRK08226 short chain dehydroge 71.5 27 0.00059 31.0 8.8 66 136-201 7-72 (263)
153 cd00401 AdoHcyase S-adenosyl-L 71.5 16 0.00036 36.0 7.7 53 130-186 197-249 (413)
154 cd08289 MDR_yhfp_like Yhfp put 71.5 30 0.00064 31.8 9.2 50 135-187 147-196 (326)
155 PRK08340 glucose-1-dehydrogena 70.9 55 0.0012 29.1 10.6 30 137-166 2-31 (259)
156 cd08284 FDH_like_2 Glutathione 70.8 62 0.0014 29.9 11.3 53 130-185 163-215 (344)
157 PRK06348 aspartate aminotransf 70.6 83 0.0018 30.1 12.4 110 108-221 63-175 (384)
158 PRK08589 short chain dehydroge 70.5 28 0.0006 31.5 8.6 56 136-191 7-62 (272)
159 PRK07523 gluconate 5-dehydroge 70.2 26 0.00056 31.1 8.3 67 136-202 11-78 (255)
160 PRK12779 putative bifunctional 70.2 22 0.00047 38.9 9.0 31 137-167 307-337 (944)
161 PF00185 OTCace: Aspartate/orn 70.1 18 0.00039 30.6 6.7 46 144-189 12-65 (158)
162 PTZ00354 alcohol dehydrogenase 69.8 61 0.0013 29.6 10.9 58 129-189 135-192 (334)
163 PRK05557 fabG 3-ketoacyl-(acyl 69.8 41 0.00089 29.2 9.4 65 137-201 7-73 (248)
164 PRK06139 short chain dehydroge 69.8 21 0.00045 33.8 7.8 69 136-204 8-77 (330)
165 TIGR01751 crot-CoA-red crotony 69.6 29 0.00063 33.4 9.0 56 130-188 185-240 (398)
166 PLN02740 Alcohol dehydrogenase 69.6 85 0.0018 30.0 12.2 57 128-187 192-248 (381)
167 PF13561 adh_short_C2: Enoyl-( 69.5 19 0.00042 31.8 7.2 50 142-191 3-54 (241)
168 PF08659 KR: KR domain; Inter 69.1 27 0.00059 29.8 7.8 70 137-206 2-76 (181)
169 PTZ00079 NADP-specific glutama 68.6 31 0.00067 34.5 8.9 53 115-167 216-268 (454)
170 cd08242 MDR_like Medium chain 68.6 37 0.00079 31.2 9.2 57 127-187 148-204 (319)
171 TIGR02818 adh_III_F_hyde S-(hy 68.6 1E+02 0.0023 29.2 12.5 57 128-187 179-235 (368)
172 PRK06114 short chain dehydroge 68.5 50 0.0011 29.3 9.8 68 136-203 9-78 (254)
173 cd08297 CAD3 Cinnamyl alcohol 68.3 55 0.0012 30.4 10.4 54 131-187 162-215 (341)
174 KOG0024 Sorbitol dehydrogenase 68.0 22 0.00047 34.1 7.3 64 125-191 160-223 (354)
175 PRK10754 quinone oxidoreductas 68.0 71 0.0015 29.3 11.0 57 128-187 134-190 (327)
176 PRK12771 putative glutamate sy 67.9 13 0.00028 37.9 6.4 54 133-187 135-206 (564)
177 cd08285 NADP_ADH NADP(H)-depen 67.8 1.1E+02 0.0023 28.6 15.0 58 127-187 159-216 (351)
178 PRK10537 voltage-gated potassi 67.7 1.1E+02 0.0024 29.9 12.6 49 137-190 241-289 (393)
179 PRK07097 gluconate 5-dehydroge 67.7 32 0.0007 30.8 8.4 67 136-202 11-78 (265)
180 TIGR00561 pntA NAD(P) transhyd 67.6 79 0.0017 32.2 11.7 51 137-190 165-215 (511)
181 PRK08643 acetoin reductase; Va 67.5 37 0.00081 30.0 8.7 67 136-202 3-70 (256)
182 PF04127 DFP: DNA / pantothena 67.3 33 0.00072 29.9 8.0 61 138-208 22-83 (185)
183 PRK12937 short chain dehydroge 67.0 49 0.0011 28.8 9.3 66 136-201 6-73 (245)
184 cd08243 quinone_oxidoreductase 66.9 69 0.0015 28.9 10.6 57 129-188 137-193 (320)
185 PRK07550 hypothetical protein; 66.9 1.1E+02 0.0025 29.0 12.5 77 111-191 67-144 (386)
186 COG0078 ArgF Ornithine carbamo 66.8 26 0.00057 33.1 7.6 56 136-191 154-215 (310)
187 PRK05786 fabG 3-ketoacyl-(acyl 66.4 39 0.00086 29.4 8.5 33 136-168 6-38 (238)
188 PRK08063 enoyl-(acyl carrier p 66.2 54 0.0012 28.7 9.5 57 136-192 5-63 (250)
189 PRK05854 short chain dehydroge 66.1 73 0.0016 29.6 10.7 32 136-167 15-46 (313)
190 PRK07792 fabG 3-ketoacyl-(acyl 65.7 43 0.00093 31.0 9.0 68 136-203 13-82 (306)
191 cd08291 ETR_like_1 2-enoyl thi 65.4 47 0.001 30.7 9.3 52 136-190 144-196 (324)
192 PRK08277 D-mannonate oxidoredu 65.3 46 0.001 29.9 9.0 56 136-191 11-67 (278)
193 PRK05876 short chain dehydroge 65.2 39 0.00085 30.7 8.5 66 136-201 7-73 (275)
194 cd08288 MDR_yhdh Yhdh putative 65.2 45 0.00097 30.5 9.0 51 134-187 146-196 (324)
195 PRK12939 short chain dehydroge 64.8 42 0.0009 29.4 8.4 68 136-203 8-76 (250)
196 PRK05396 tdh L-threonine 3-deh 64.8 41 0.00089 31.3 8.8 52 133-187 162-213 (341)
197 PF00670 AdoHcyase_NAD: S-aden 64.7 33 0.00072 29.4 7.3 95 130-252 18-112 (162)
198 PRK12935 acetoacetyl-CoA reduc 64.7 48 0.001 29.1 8.8 68 136-203 7-76 (247)
199 cd05313 NAD_bind_2_Glu_DH NAD( 64.6 51 0.0011 30.4 9.0 52 116-167 18-69 (254)
200 PRK06182 short chain dehydroge 64.3 99 0.0021 27.7 11.0 53 136-191 4-56 (273)
201 PRK07454 short chain dehydroge 64.2 34 0.00074 29.9 7.7 55 137-191 8-63 (241)
202 PRK07666 fabG 3-ketoacyl-(acyl 63.8 46 0.00099 29.1 8.5 67 137-203 9-76 (239)
203 PRK15408 autoinducer 2-binding 63.8 1.3E+02 0.0029 28.4 17.4 169 94-276 49-243 (336)
204 PRK05867 short chain dehydroge 63.7 42 0.00092 29.7 8.3 56 136-191 10-66 (253)
205 cd05282 ETR_like 2-enoyl thioe 63.6 67 0.0015 29.2 9.8 57 128-187 132-188 (323)
206 cd05286 QOR2 Quinone oxidoredu 63.6 95 0.0021 27.7 10.7 57 129-188 131-187 (320)
207 cd08246 crotonyl_coA_red croto 63.3 28 0.0006 33.4 7.5 55 130-187 189-243 (393)
208 TIGR02824 quinone_pig3 putativ 63.2 1E+02 0.0022 27.7 10.9 58 127-187 132-189 (325)
209 PRK06172 short chain dehydroge 63.1 43 0.00094 29.5 8.2 67 136-202 8-75 (253)
210 TIGR02853 spore_dpaA dipicolin 63.0 72 0.0016 29.7 9.9 88 93-185 108-197 (287)
211 cd08269 Zn_ADH9 Alcohol dehydr 62.9 1.1E+02 0.0023 27.7 11.0 58 127-187 122-179 (312)
212 PRK07478 short chain dehydroge 62.9 44 0.00096 29.5 8.3 56 136-191 7-63 (254)
213 PRK05993 short chain dehydroge 62.9 71 0.0015 28.9 9.7 53 136-191 5-57 (277)
214 cd08300 alcohol_DH_class_III c 62.8 44 0.00096 31.7 8.7 57 128-187 180-236 (368)
215 PRK12744 short chain dehydroge 62.3 50 0.0011 29.3 8.5 66 136-201 9-79 (257)
216 PRK12938 acetyacetyl-CoA reduc 62.2 49 0.0011 29.0 8.4 55 137-191 5-61 (246)
217 PF13460 NAD_binding_10: NADH( 62.2 29 0.00062 29.0 6.6 48 139-191 2-49 (183)
218 PRK08217 fabG 3-ketoacyl-(acyl 62.0 54 0.0012 28.6 8.6 56 136-191 6-62 (253)
219 COG2518 Pcm Protein-L-isoaspar 61.9 39 0.00086 30.2 7.5 110 120-251 58-171 (209)
220 cd08250 Mgc45594_like Mgc45594 61.8 1.1E+02 0.0023 28.1 10.9 56 129-187 134-189 (329)
221 cd08277 liver_alcohol_DH_like 61.8 50 0.0011 31.3 8.9 57 128-187 178-234 (365)
222 cd08244 MDR_enoyl_red Possible 61.5 1.1E+02 0.0024 27.8 10.9 57 127-186 135-191 (324)
223 cd08251 polyketide_synthase po 61.4 1.2E+02 0.0026 27.0 11.1 57 127-186 113-169 (303)
224 PF12000 Glyco_trans_4_3: Gkyc 61.3 11 0.00025 32.5 3.9 41 229-275 55-95 (171)
225 PRK12745 3-ketoacyl-(acyl-carr 61.3 70 0.0015 28.1 9.3 66 137-202 4-71 (256)
226 PRK08085 gluconate 5-dehydroge 61.2 53 0.0012 29.0 8.5 67 136-202 10-77 (254)
227 PRK12826 3-ketoacyl-(acyl-carr 61.1 51 0.0011 28.8 8.3 67 136-202 7-74 (251)
228 PF02254 TrkA_N: TrkA-N domain 60.9 75 0.0016 24.5 10.9 50 139-191 1-50 (116)
229 PRK06194 hypothetical protein; 60.9 62 0.0014 29.2 9.0 56 136-191 7-63 (287)
230 cd08258 Zn_ADH4 Alcohol dehydr 60.9 96 0.0021 28.5 10.4 55 128-184 158-212 (306)
231 TIGR00692 tdh L-threonine 3-de 60.9 63 0.0014 30.1 9.2 53 132-187 159-211 (340)
232 PRK08278 short chain dehydroge 60.8 79 0.0017 28.5 9.7 66 136-201 7-80 (273)
233 PRK06128 oxidoreductase; Provi 60.5 81 0.0018 28.9 9.8 56 136-191 56-114 (300)
234 PRK07832 short chain dehydroge 60.4 1.1E+02 0.0024 27.3 10.6 30 137-166 2-31 (272)
235 PRK07806 short chain dehydroge 60.4 81 0.0017 27.6 9.5 56 136-191 7-64 (248)
236 cd05288 PGDH Prostaglandin deh 60.3 1.1E+02 0.0025 27.8 10.8 58 128-188 139-197 (329)
237 PRK05653 fabG 3-ketoacyl-(acyl 60.3 78 0.0017 27.3 9.3 55 137-191 7-62 (246)
238 TIGR03206 benzo_BadH 2-hydroxy 60.2 51 0.0011 28.9 8.1 66 136-201 4-70 (250)
239 PRK09422 ethanol-active dehydr 60.1 85 0.0018 29.0 10.0 59 127-189 155-214 (338)
240 cd08253 zeta_crystallin Zeta-c 59.9 1.1E+02 0.0025 27.3 10.6 55 130-187 140-194 (325)
241 PRK06701 short chain dehydroge 59.8 70 0.0015 29.3 9.2 65 137-201 48-114 (290)
242 PRK08306 dipicolinate synthase 59.7 85 0.0019 29.3 9.8 47 137-186 153-199 (296)
243 PF01262 AlaDh_PNT_C: Alanine 59.7 37 0.0008 28.7 6.8 51 137-190 21-71 (168)
244 PRK09134 short chain dehydroge 59.5 87 0.0019 27.8 9.6 68 136-203 10-79 (258)
245 PRK10083 putative oxidoreducta 59.4 91 0.002 28.8 10.0 60 126-188 152-212 (339)
246 cd08267 MDR1 Medium chain dehy 59.4 63 0.0014 29.2 8.8 54 129-186 138-191 (319)
247 PRK12809 putative oxidoreducta 59.2 29 0.00063 36.1 7.1 77 112-188 279-380 (639)
248 TIGR02415 23BDH acetoin reduct 59.2 61 0.0013 28.5 8.5 65 137-201 2-67 (254)
249 PRK07035 short chain dehydroge 59.2 70 0.0015 28.2 8.9 55 137-191 10-65 (252)
250 cd05188 MDR Medium chain reduc 59.2 1.1E+02 0.0024 26.6 10.2 55 128-186 128-182 (271)
251 PRK12429 3-hydroxybutyrate deh 59.1 72 0.0016 28.0 9.0 68 136-203 5-73 (258)
252 KOG1201 Hydroxysteroid 17-beta 59.1 1.2E+02 0.0027 28.6 10.5 73 135-208 38-112 (300)
253 TIGR03325 BphB_TodD cis-2,3-di 59.0 76 0.0017 28.2 9.2 53 136-191 6-59 (262)
254 cd08264 Zn_ADH_like2 Alcohol d 59.0 53 0.0011 30.2 8.3 50 128-184 156-205 (325)
255 PRK07890 short chain dehydroge 59.0 52 0.0011 29.0 8.0 67 136-202 6-73 (258)
256 PRK15408 autoinducer 2-binding 59.0 1.6E+02 0.0035 27.8 15.1 73 114-191 37-114 (336)
257 PRK05866 short chain dehydroge 58.9 60 0.0013 29.9 8.6 55 137-191 42-97 (293)
258 PLN00175 aminotransferase fami 58.7 1.8E+02 0.0039 28.2 12.4 108 111-221 91-200 (413)
259 PRK06181 short chain dehydroge 58.5 64 0.0014 28.6 8.5 67 137-203 3-70 (263)
260 PRK06949 short chain dehydroge 58.4 57 0.0012 28.7 8.2 32 136-167 10-41 (258)
261 PRK08068 transaminase; Reviewe 58.4 1.5E+02 0.0033 28.2 11.7 78 111-191 70-148 (389)
262 PRK08936 glucose-1-dehydrogena 58.4 93 0.002 27.6 9.6 56 136-191 8-65 (261)
263 PRK05370 argininosuccinate syn 58.4 2E+02 0.0044 28.7 12.9 131 135-275 11-157 (447)
264 PRK08862 short chain dehydroge 58.2 1.2E+02 0.0026 26.7 10.2 54 136-189 6-60 (227)
265 TIGR02095 glgA glycogen/starch 58.0 80 0.0017 31.1 9.9 29 141-169 16-44 (473)
266 PRK06197 short chain dehydroge 58.0 1.5E+02 0.0032 27.2 11.1 32 136-167 17-48 (306)
267 cd08298 CAD2 Cinnamyl alcohol 57.9 65 0.0014 29.6 8.7 54 128-185 161-214 (329)
268 PRK08862 short chain dehydroge 57.8 66 0.0014 28.4 8.4 11 267-277 175-185 (227)
269 PRK08303 short chain dehydroge 57.8 79 0.0017 29.4 9.3 56 136-191 9-75 (305)
270 cd06324 PBP1_ABC_sugar_binding 57.8 1.5E+02 0.0033 27.0 18.3 45 230-277 192-240 (305)
271 PRK06567 putative bifunctional 57.7 30 0.00064 38.1 7.0 31 137-167 384-414 (1028)
272 TIGR01316 gltA glutamate synth 57.7 42 0.00091 33.2 7.7 52 137-188 273-329 (449)
273 cd05211 NAD_bind_Glu_Leu_Phe_V 57.6 56 0.0012 29.2 7.8 53 117-169 4-56 (217)
274 PRK07677 short chain dehydroge 57.6 62 0.0014 28.6 8.3 65 137-201 3-68 (252)
275 cd08259 Zn_ADH5 Alcohol dehydr 57.6 80 0.0017 28.8 9.3 55 129-186 157-211 (332)
276 PLN02527 aspartate carbamoyltr 57.6 76 0.0016 30.0 9.1 61 128-190 145-211 (306)
277 COG2130 Putative NADP-dependen 57.3 82 0.0018 30.1 9.0 59 127-188 143-202 (340)
278 PRK06077 fabG 3-ketoacyl-(acyl 57.1 65 0.0014 28.2 8.3 66 136-201 7-74 (252)
279 cd08261 Zn_ADH7 Alcohol dehydr 57.0 1.3E+02 0.0029 27.7 10.7 54 128-185 153-206 (337)
280 cd08187 BDH Butanol dehydrogen 56.9 1.8E+02 0.004 28.0 12.0 95 161-262 7-105 (382)
281 KOG2862 Alanine-glyoxylate ami 56.9 1.5E+02 0.0033 28.5 10.6 31 134-165 91-121 (385)
282 PRK08213 gluconate 5-dehydroge 56.8 64 0.0014 28.6 8.2 66 136-201 13-79 (259)
283 PRK06124 gluconate 5-dehydroge 56.7 72 0.0016 28.1 8.6 68 136-203 12-80 (256)
284 PRK03692 putative UDP-N-acetyl 56.7 79 0.0017 28.8 8.8 96 149-253 70-169 (243)
285 PRK06947 glucose-1-dehydrogena 56.7 58 0.0013 28.5 7.9 55 137-191 4-60 (248)
286 PRK06198 short chain dehydroge 56.6 95 0.0021 27.4 9.3 66 136-201 7-74 (260)
287 PRK08261 fabG 3-ketoacyl-(acyl 56.6 92 0.002 30.5 10.0 67 136-204 211-277 (450)
288 PRK09730 putative NAD(P)-bindi 56.6 1.1E+02 0.0023 26.6 9.6 67 137-203 3-71 (247)
289 cd08254 hydroxyacyl_CoA_DH 6-h 56.2 1.3E+02 0.0028 27.5 10.4 58 128-189 159-216 (338)
290 cd08240 6_hydroxyhexanoate_dh_ 56.2 1.4E+02 0.003 27.8 10.8 55 130-187 171-225 (350)
291 cd08235 iditol_2_DH_like L-idi 56.1 1.5E+02 0.0033 27.3 11.0 57 127-186 158-214 (343)
292 COG2085 Predicted dinucleotide 56.0 84 0.0018 28.2 8.5 77 138-216 3-92 (211)
293 PRK11891 aspartate carbamoyltr 55.9 44 0.00094 33.2 7.4 53 138-190 243-301 (429)
294 PLN02827 Alcohol dehydrogenase 55.8 87 0.0019 30.0 9.5 57 128-187 187-243 (378)
295 COG0137 ArgG Argininosuccinate 55.8 67 0.0015 31.4 8.4 130 137-274 6-146 (403)
296 PRK06702 O-acetylhomoserine am 55.7 71 0.0015 31.7 8.9 79 138-221 78-160 (432)
297 PRK02610 histidinol-phosphate 55.4 71 0.0015 30.4 8.7 86 137-222 92-182 (374)
298 COG1587 HemD Uroporphyrinogen- 55.3 1.3E+02 0.0027 27.2 9.9 128 148-284 86-220 (248)
299 cd05279 Zn_ADH1 Liver alcohol 55.1 1.1E+02 0.0025 28.8 10.1 55 128-185 177-231 (365)
300 PRK13982 bifunctional SbtC-lik 55.0 22 0.00048 35.8 5.2 42 143-191 280-322 (475)
301 PRK06113 7-alpha-hydroxysteroi 54.8 74 0.0016 28.2 8.3 66 136-201 12-78 (255)
302 TIGR00936 ahcY adenosylhomocys 54.8 46 0.001 32.8 7.3 53 130-186 190-242 (406)
303 PRK08017 oxidoreductase; Provi 54.7 1.1E+02 0.0023 26.9 9.3 52 137-191 4-55 (256)
304 PRK08265 short chain dehydroge 54.7 1E+02 0.0023 27.4 9.3 63 136-201 7-70 (261)
305 PRK12775 putative trifunctiona 54.7 89 0.0019 34.6 10.2 32 137-168 431-462 (1006)
306 PRK07791 short chain dehydroge 54.6 95 0.0021 28.3 9.2 56 136-191 7-72 (286)
307 PRK07814 short chain dehydroge 54.6 71 0.0015 28.5 8.2 68 136-203 11-79 (263)
308 cd08191 HHD 6-hydroxyhexanoate 54.6 2E+02 0.0044 27.8 11.8 26 233-262 73-98 (386)
309 cd08278 benzyl_alcohol_DH Benz 54.4 1.4E+02 0.0031 28.1 10.7 58 128-188 180-237 (365)
310 PRK12828 short chain dehydroge 54.4 1.3E+02 0.0028 25.8 9.7 56 136-191 8-64 (239)
311 PRK07985 oxidoreductase; Provi 54.3 84 0.0018 28.9 8.8 66 137-202 51-119 (294)
312 PRK07231 fabG 3-ketoacyl-(acyl 54.2 1.1E+02 0.0024 26.6 9.3 55 136-191 6-61 (251)
313 cd05284 arabinose_DH_like D-ar 53.7 1.3E+02 0.0029 27.6 10.1 53 131-187 164-217 (340)
314 TIGR03801 asp_4_decarbox aspar 53.5 1.8E+02 0.0039 29.7 11.6 82 109-190 126-215 (521)
315 cd05281 TDH Threonine dehydrog 53.5 79 0.0017 29.4 8.6 52 133-187 162-213 (341)
316 PRK13376 pyrB bifunctional asp 53.3 1.1E+02 0.0023 31.3 9.8 54 137-190 175-234 (525)
317 COG2242 CobL Precorrin-6B meth 53.2 55 0.0012 28.8 6.8 133 133-285 33-170 (187)
318 PRK06101 short chain dehydroge 53.2 97 0.0021 27.2 8.7 48 137-187 3-50 (240)
319 cd08238 sorbose_phosphate_red 53.1 1.2E+02 0.0027 29.3 10.1 59 129-189 170-238 (410)
320 cd08260 Zn_ADH6 Alcohol dehydr 53.0 1.5E+02 0.0032 27.5 10.4 52 129-184 160-211 (345)
321 cd08205 RuBisCO_IV_RLP Ribulos 53.0 2.2E+02 0.0048 27.5 12.1 68 98-170 159-234 (367)
322 cd08299 alcohol_DH_class_I_II_ 52.9 1.4E+02 0.0031 28.3 10.4 56 127-185 183-238 (373)
323 cd08272 MDR6 Medium chain dehy 52.9 1.6E+02 0.0036 26.4 10.5 57 128-188 138-194 (326)
324 PRK06138 short chain dehydroge 52.9 1E+02 0.0023 26.9 8.9 66 136-202 6-72 (252)
325 PRK08264 short chain dehydroge 52.9 64 0.0014 28.1 7.5 32 136-167 7-39 (238)
326 cd08276 MDR7 Medium chain dehy 52.8 1.8E+02 0.0039 26.4 11.2 55 129-187 155-209 (336)
327 PLN02702 L-idonate 5-dehydroge 52.7 1.1E+02 0.0024 28.8 9.5 57 128-187 175-231 (364)
328 cd08241 QOR1 Quinone oxidoredu 52.6 1.7E+02 0.0037 26.1 10.5 56 129-187 134-189 (323)
329 PRK09257 aromatic amino acid a 52.5 1.7E+02 0.0037 28.0 11.0 81 107-190 65-149 (396)
330 PLN02342 ornithine carbamoyltr 52.5 51 0.0011 31.8 7.1 61 128-189 188-251 (348)
331 cd05280 MDR_yhdh_yhfp Yhdh and 52.4 1.2E+02 0.0025 27.7 9.4 48 137-187 149-196 (325)
332 TIGR03552 F420_cofC 2-phospho- 52.3 1.5E+02 0.0032 25.3 10.8 68 179-252 62-129 (195)
333 PRK05717 oxidoreductase; Valid 52.3 1.2E+02 0.0025 26.8 9.2 53 136-191 11-64 (255)
334 cd08245 CAD Cinnamyl alcohol d 52.2 99 0.0021 28.4 9.0 57 128-188 156-212 (330)
335 TIGR03540 DapC_direct LL-diami 52.0 2.2E+02 0.0047 27.1 12.0 110 110-221 66-177 (383)
336 PRK09072 short chain dehydroge 51.9 94 0.002 27.6 8.5 32 136-167 6-37 (263)
337 smart00822 PKS_KR This enzymat 51.9 1.1E+02 0.0024 24.4 8.4 55 137-191 2-61 (180)
338 PRK00779 ornithine carbamoyltr 51.8 55 0.0012 30.8 7.1 61 128-189 146-209 (304)
339 PRK08192 aspartate carbamoyltr 51.7 64 0.0014 31.0 7.6 54 137-190 160-219 (338)
340 COG2894 MinD Septum formation 51.7 1.9E+02 0.0042 26.4 12.0 115 149-279 21-148 (272)
341 PRK12859 3-ketoacyl-(acyl-carr 51.4 83 0.0018 28.0 8.1 67 137-203 8-88 (256)
342 cd05285 sorbitol_DH Sorbitol d 51.4 1.1E+02 0.0025 28.3 9.3 58 127-187 155-212 (343)
343 PRK06500 short chain dehydroge 51.4 1.3E+02 0.0028 26.2 9.2 52 136-190 7-59 (249)
344 cd08282 PFDH_like Pseudomonas 51.4 92 0.002 29.6 8.8 55 128-185 170-224 (375)
345 TIGR01831 fabG_rel 3-oxoacyl-( 51.4 1.3E+02 0.0028 26.1 9.2 53 139-191 2-56 (239)
346 PRK14031 glutamate dehydrogena 51.3 69 0.0015 32.0 8.0 52 116-167 208-259 (444)
347 COG0623 FabI Enoyl-[acyl-carri 51.2 93 0.002 28.5 8.0 26 254-279 122-148 (259)
348 PLN02253 xanthoxin dehydrogena 51.2 90 0.002 28.0 8.3 32 136-167 19-50 (280)
349 PRK07066 3-hydroxybutyryl-CoA 51.2 1.9E+02 0.0041 27.5 10.7 32 137-168 8-39 (321)
350 cd05278 FDH_like Formaldehyde 51.1 1.1E+02 0.0023 28.3 9.1 57 128-187 161-217 (347)
351 COG4558 ChuT ABC-type hemin tr 51.1 96 0.0021 29.2 8.3 54 221-276 192-274 (300)
352 TIGR02823 oxido_YhdH putative 51.0 1.1E+02 0.0023 28.0 8.9 54 132-188 142-196 (323)
353 cd08249 enoyl_reductase_like e 50.9 92 0.002 29.0 8.6 51 133-187 153-203 (339)
354 COG1010 CobJ Precorrin-3B meth 50.6 1.3E+02 0.0028 27.5 8.8 69 177-249 41-111 (249)
355 PLN02586 probable cinnamyl alc 50.6 86 0.0019 29.8 8.4 55 130-187 179-233 (360)
356 cd08270 MDR4 Medium chain dehy 50.4 1.3E+02 0.0027 27.2 9.2 50 134-186 132-181 (305)
357 PRK05565 fabG 3-ketoacyl-(acyl 50.4 1E+02 0.0023 26.7 8.4 55 137-191 7-63 (247)
358 cd08290 ETR 2-enoyl thioester 50.3 97 0.0021 28.6 8.6 60 130-189 142-202 (341)
359 TIGR01963 PHB_DH 3-hydroxybuty 50.2 1E+02 0.0022 26.9 8.4 55 137-191 3-58 (255)
360 PRK06290 aspartate aminotransf 50.0 2.5E+02 0.0055 27.3 12.2 109 110-221 80-192 (410)
361 PRK12831 putative oxidoreducta 50.0 66 0.0014 32.0 7.8 52 137-188 282-338 (464)
362 TIGR02817 adh_fam_1 zinc-bindi 49.8 1.2E+02 0.0025 27.9 9.1 50 135-187 149-199 (336)
363 PRK07774 short chain dehydroge 49.8 1.1E+02 0.0024 26.7 8.5 55 136-190 7-62 (250)
364 PF02737 3HCDH_N: 3-hydroxyacy 49.8 31 0.00067 29.7 4.7 30 139-168 2-31 (180)
365 cd08279 Zn_ADH_class_III Class 49.6 2E+02 0.0042 27.1 10.7 55 128-185 176-230 (363)
366 COG0399 WecE Predicted pyridox 49.6 1.1E+02 0.0023 30.0 8.8 92 137-231 50-145 (374)
367 PRK07904 short chain dehydroge 49.5 1.5E+02 0.0031 26.5 9.4 54 136-189 9-66 (253)
368 PRK07102 short chain dehydroge 49.5 1.1E+02 0.0023 26.8 8.4 55 137-191 3-59 (243)
369 PRK04284 ornithine carbamoyltr 49.4 1.3E+02 0.0029 28.7 9.4 58 130-189 151-216 (332)
370 cd05283 CAD1 Cinnamyl alcohol 49.3 1.2E+02 0.0025 28.2 9.0 52 132-187 167-218 (337)
371 PRK15452 putative protease; Pr 49.2 2.3E+02 0.005 28.3 11.3 103 163-275 5-117 (443)
372 PRK12414 putative aminotransfe 49.2 2.4E+02 0.0053 26.8 12.3 82 138-221 92-175 (384)
373 PRK08251 short chain dehydroge 49.1 1.3E+02 0.0027 26.4 8.8 65 137-201 4-71 (248)
374 cd08248 RTN4I1 Human Reticulon 49.1 1E+02 0.0022 28.5 8.6 49 135-187 163-211 (350)
375 PRK11658 UDP-4-amino-4-deoxy-L 49.0 1.3E+02 0.0029 28.8 9.5 52 139-190 51-102 (379)
376 COG0159 TrpA Tryptophan syntha 48.9 1.3E+02 0.0029 27.9 8.9 77 105-189 100-178 (265)
377 TIGR00658 orni_carb_tr ornithi 48.9 72 0.0016 30.0 7.4 61 128-189 142-208 (304)
378 PRK08912 hypothetical protein; 48.8 2.4E+02 0.0053 26.7 13.3 80 109-191 61-141 (387)
379 PF08660 Alg14: Oligosaccharid 48.7 1.7E+02 0.0037 25.0 11.9 41 139-179 3-48 (170)
380 COG0300 DltE Short-chain dehyd 48.7 1.2E+02 0.0025 28.2 8.6 66 136-201 7-74 (265)
381 PRK09291 short chain dehydroge 48.6 66 0.0014 28.3 6.9 32 137-168 4-35 (257)
382 PRK06836 aspartate aminotransf 48.5 2.2E+02 0.0048 27.3 11.0 109 110-221 72-181 (394)
383 PRK15481 transcriptional regul 48.3 2E+02 0.0043 28.0 10.7 80 138-221 143-225 (431)
384 PRK08594 enoyl-(acyl carrier p 48.3 1.4E+02 0.0031 26.6 9.1 67 137-203 9-79 (257)
385 PRK02255 putrescine carbamoylt 48.2 72 0.0016 30.6 7.4 53 137-189 156-214 (338)
386 PRK05826 pyruvate kinase; Prov 48.2 2.8E+02 0.006 27.9 11.8 122 151-278 264-406 (465)
387 PRK06123 short chain dehydroge 48.2 91 0.002 27.2 7.7 67 137-203 4-72 (248)
388 PRK11706 TDP-4-oxo-6-deoxy-D-g 48.0 65 0.0014 30.9 7.2 55 137-191 47-101 (375)
389 CHL00194 ycf39 Ycf39; Provisio 47.9 93 0.002 28.8 8.1 32 137-168 2-33 (317)
390 PRK07576 short chain dehydroge 47.8 1.3E+02 0.0028 26.9 8.8 56 136-191 10-66 (264)
391 cd01078 NAD_bind_H4MPT_DH NADP 47.4 1.8E+02 0.0039 24.8 10.9 32 135-166 28-59 (194)
392 PRK13243 glyoxylate reductase; 47.3 1.5E+02 0.0033 28.1 9.5 104 137-264 151-256 (333)
393 PRK06720 hypothetical protein; 47.2 1.8E+02 0.0038 24.7 9.1 53 136-188 17-70 (169)
394 PRK12769 putative oxidoreducta 47.1 34 0.00073 35.7 5.4 51 137-187 328-396 (654)
395 PRK07069 short chain dehydroge 47.1 1.9E+02 0.0042 25.1 10.3 31 138-168 2-32 (251)
396 PRK08642 fabG 3-ketoacyl-(acyl 47.1 1.3E+02 0.0029 26.2 8.7 53 137-191 7-60 (253)
397 PF02310 B12-binding: B12 bind 47.0 97 0.0021 24.0 7.0 92 149-250 18-113 (121)
398 cd05289 MDR_like_2 alcohol deh 46.8 1.7E+02 0.0037 26.0 9.5 52 129-184 139-190 (309)
399 COG1433 Uncharacterized conser 46.8 1.1E+02 0.0024 24.9 7.2 52 148-202 54-105 (121)
400 PRK09275 aspartate aminotransf 46.8 2.6E+02 0.0057 28.6 11.5 114 108-221 131-254 (527)
401 PRK12825 fabG 3-ketoacyl-(acyl 46.8 1.6E+02 0.0035 25.3 9.0 55 137-191 8-64 (249)
402 PRK07326 short chain dehydroge 46.7 1.3E+02 0.0028 26.0 8.5 31 136-166 7-37 (237)
403 PRK07063 short chain dehydroge 46.7 1.3E+02 0.0028 26.6 8.5 56 136-191 8-66 (260)
404 PRK09242 tropinone reductase; 46.6 1.2E+02 0.0026 26.7 8.3 56 136-191 10-68 (257)
405 PRK01077 cobyrinic acid a,c-di 46.6 2.5E+02 0.0053 27.9 11.2 46 231-277 106-152 (451)
406 COG1454 EutG Alcohol dehydroge 46.5 1.7E+02 0.0036 28.7 9.6 99 161-264 7-107 (377)
407 PRK07062 short chain dehydroge 46.5 1.5E+02 0.0033 26.2 9.0 33 136-168 9-41 (265)
408 PLN02178 cinnamyl-alcohol dehy 46.5 64 0.0014 31.0 6.9 52 133-187 177-228 (375)
409 PRK12810 gltD glutamate syntha 46.4 84 0.0018 31.2 7.9 76 112-187 112-212 (471)
410 COG0285 FolC Folylpolyglutamat 46.4 1.2E+02 0.0025 30.3 8.6 96 145-255 56-151 (427)
411 PRK08416 7-alpha-hydroxysteroi 46.3 1.6E+02 0.0034 26.2 9.0 67 136-202 9-78 (260)
412 PRK12827 short chain dehydroge 46.3 1.7E+02 0.0037 25.3 9.2 67 137-203 8-79 (249)
413 TIGR01830 3oxo_ACP_reduc 3-oxo 46.2 1.5E+02 0.0032 25.5 8.7 64 139-202 2-67 (239)
414 PRK05476 S-adenosyl-L-homocyst 46.2 59 0.0013 32.3 6.6 46 137-185 213-258 (425)
415 PRK02102 ornithine carbamoyltr 46.2 1.4E+02 0.0031 28.5 9.0 61 128-190 149-217 (331)
416 PRK05650 short chain dehydroge 46.1 1.2E+02 0.0026 27.1 8.3 55 137-191 2-57 (270)
417 TIGR01829 AcAcCoA_reduct aceto 46.0 1.1E+02 0.0023 26.5 7.8 66 137-202 2-69 (242)
418 PRK12747 short chain dehydroge 45.9 1E+02 0.0022 27.2 7.7 55 136-190 5-61 (252)
419 PF03807 F420_oxidored: NADP o 45.9 1.2E+02 0.0026 22.4 7.7 49 139-189 2-54 (96)
420 cd06268 PBP1_ABC_transporter_L 45.8 2.1E+02 0.0045 25.0 15.9 150 120-281 56-229 (298)
421 COG0796 MurI Glutamate racemas 45.7 1.1E+02 0.0023 28.6 7.7 86 196-284 16-107 (269)
422 cd08286 FDH_like_ADH2 formalde 45.6 2E+02 0.0043 26.6 10.0 54 129-186 161-215 (345)
423 COG0826 Collagenase and relate 45.5 2.9E+02 0.0062 26.6 11.1 104 165-278 10-124 (347)
424 PRK08339 short chain dehydroge 45.4 90 0.002 28.0 7.4 31 136-166 9-39 (263)
425 PRK14807 histidinol-phosphate 45.1 1.2E+02 0.0026 28.5 8.5 81 138-221 78-161 (351)
426 PRK07324 transaminase; Validat 45.0 1.2E+02 0.0025 29.0 8.4 104 110-221 61-166 (373)
427 PRK09414 glutamate dehydrogena 44.9 81 0.0018 31.5 7.3 53 115-167 211-263 (445)
428 PRK07775 short chain dehydroge 44.7 1.7E+02 0.0037 26.3 9.1 65 137-201 12-77 (274)
429 PRK08220 2,3-dihydroxybenzoate 44.5 1.4E+02 0.0031 26.0 8.4 33 136-168 9-41 (252)
430 PRK06924 short chain dehydroge 44.4 1.6E+02 0.0034 25.8 8.7 54 137-191 3-56 (251)
431 PRK00654 glgA glycogen synthas 44.3 1.4E+02 0.003 29.5 9.0 101 142-257 17-134 (466)
432 PRK14804 ornithine carbamoyltr 44.2 73 0.0016 30.2 6.7 35 137-171 155-189 (311)
433 cd08234 threonine_DH_like L-th 44.2 2E+02 0.0043 26.3 9.7 54 128-184 153-206 (334)
434 PRK12384 sorbitol-6-phosphate 43.9 2E+02 0.0043 25.3 9.3 31 137-167 4-34 (259)
435 PRK12824 acetoacetyl-CoA reduc 43.6 1.9E+02 0.004 25.1 9.0 67 137-203 4-72 (245)
436 cd05276 p53_inducible_oxidored 43.6 2.4E+02 0.0051 25.1 10.9 55 130-187 135-189 (323)
437 PRK08175 aminotransferase; Val 43.5 3E+02 0.0065 26.3 13.0 109 110-221 66-177 (395)
438 PTZ00345 glycerol-3-phosphate 43.5 86 0.0019 30.4 7.2 33 136-168 11-50 (365)
439 cd08255 2-desacetyl-2-hydroxye 43.4 1.5E+02 0.0032 26.4 8.5 52 127-182 90-142 (277)
440 PLN02477 glutamate dehydrogena 43.3 1.6E+02 0.0034 29.1 9.0 51 116-167 186-237 (410)
441 cd08551 Fe-ADH iron-containing 43.2 3E+02 0.0066 26.2 11.3 22 233-255 71-93 (370)
442 PLN02583 cinnamoyl-CoA reducta 43.2 1.5E+02 0.0033 27.1 8.6 33 136-168 7-39 (297)
443 PRK01688 histidinol-phosphate 43.1 2.3E+02 0.005 26.7 10.0 54 137-191 75-129 (351)
444 PLN02494 adenosylhomocysteinas 43.0 90 0.0019 31.5 7.3 52 130-185 249-300 (477)
445 PRK06079 enoyl-(acyl carrier p 43.0 1.2E+02 0.0027 26.8 7.8 31 136-166 8-40 (252)
446 TIGR01318 gltD_gamma_fam gluta 42.8 96 0.0021 30.9 7.6 51 137-187 142-210 (467)
447 cd08185 Fe-ADH1 Iron-containin 42.7 2.1E+02 0.0045 27.6 9.8 94 162-262 5-102 (380)
448 PRK12746 short chain dehydroge 42.6 1.9E+02 0.0041 25.3 8.9 56 136-191 7-64 (254)
449 PRK05166 histidinol-phosphate 42.6 1.3E+02 0.0028 28.6 8.3 80 138-221 90-172 (371)
450 PRK07366 succinyldiaminopimela 42.4 3.1E+02 0.0067 26.1 12.3 109 110-222 67-179 (388)
451 PRK08945 putative oxoacyl-(acy 42.3 1.9E+02 0.0041 25.3 8.9 32 136-167 13-44 (247)
452 cd06451 AGAT_like Alanine-glyo 42.3 2E+02 0.0043 26.8 9.4 15 176-190 91-105 (356)
453 cd03791 GT1_Glycogen_synthase_ 42.2 1.2E+02 0.0027 29.6 8.3 28 142-169 16-43 (476)
454 PRK05872 short chain dehydroge 42.2 1.5E+02 0.0033 27.1 8.5 31 136-166 10-40 (296)
455 PRK07023 short chain dehydroge 42.2 1.4E+02 0.0029 26.1 7.9 51 137-191 3-53 (243)
456 cd08176 LPO Lactadehyde:propan 42.2 3.2E+02 0.007 26.2 11.6 95 160-262 5-104 (377)
457 PRK12748 3-ketoacyl-(acyl-carr 42.1 1.9E+02 0.0042 25.4 8.9 66 137-202 7-86 (256)
458 PRK06953 short chain dehydroge 42.1 2.2E+02 0.0049 24.4 9.7 52 137-191 3-54 (222)
459 PRK04870 histidinol-phosphate 42.1 1.5E+02 0.0032 27.8 8.6 81 138-221 83-166 (356)
460 PRK07856 short chain dehydroge 41.9 1.4E+02 0.0031 26.2 8.1 32 136-167 7-38 (252)
461 PRK10538 malonic semialdehyde 41.9 2.4E+02 0.0052 24.7 9.5 52 137-191 2-54 (248)
462 PRK06463 fabG 3-ketoacyl-(acyl 41.8 2.4E+02 0.0053 24.7 10.9 54 136-191 8-61 (255)
463 PRK07067 sorbitol dehydrogenas 41.2 2.3E+02 0.005 24.9 9.3 32 136-167 7-38 (257)
464 PRK13984 putative oxidoreducta 41.1 97 0.0021 31.8 7.6 51 137-187 284-352 (604)
465 PRK15407 lipopolysaccharide bi 41.1 2.3E+02 0.005 28.0 10.0 55 137-191 79-141 (438)
466 cd01011 nicotinamidase Nicotin 41.0 1.8E+02 0.004 25.1 8.4 61 122-186 129-196 (196)
467 PRK10624 L-1,2-propanediol oxi 41.0 1.9E+02 0.0041 27.9 9.2 26 232-261 80-105 (382)
468 KOG1176 Acyl-CoA synthetase [L 41.0 2.9E+02 0.0063 28.3 10.8 60 132-191 69-128 (537)
469 PRK06841 short chain dehydroge 41.0 2.3E+02 0.0049 24.8 9.2 32 136-167 16-47 (255)
470 COG1062 AdhC Zn-dependent alco 40.9 3.5E+02 0.0076 26.3 12.1 76 125-205 176-251 (366)
471 PRK08410 2-hydroxyacid dehydro 40.8 2E+02 0.0043 27.1 9.1 113 136-278 145-259 (311)
472 PRK05693 short chain dehydroge 40.7 2.7E+02 0.0058 24.9 10.8 52 137-191 3-54 (274)
473 cd06297 PBP1_LacI_like_12 Liga 40.7 2.6E+02 0.0056 24.7 19.5 36 241-278 180-219 (269)
474 TIGR02379 ECA_wecE TDP-4-keto- 40.6 90 0.002 30.1 6.9 55 137-191 47-101 (376)
475 PRK13581 D-3-phosphoglycerate 40.6 2E+02 0.0044 29.2 9.7 104 137-264 141-246 (526)
476 cd08265 Zn_ADH3 Alcohol dehydr 40.4 2.3E+02 0.0049 27.0 9.7 55 130-187 199-253 (384)
477 PRK05957 aspartate aminotransf 40.2 3.4E+02 0.0073 25.9 12.3 54 137-191 90-143 (389)
478 PRK11749 dihydropyrimidine deh 40.1 1.1E+02 0.0025 30.0 7.7 52 137-188 274-331 (457)
479 PRK06200 2,3-dihydroxy-2,3-dih 40.0 2.6E+02 0.0057 24.7 9.5 51 136-189 7-58 (263)
480 PRK07831 short chain dehydroge 39.8 2.3E+02 0.0049 25.1 9.1 31 136-166 18-49 (262)
481 COG1648 CysG Siroheme synthase 39.8 2.2E+02 0.0048 25.3 8.7 114 137-264 13-141 (210)
482 PHA02542 41 41 helicase; Provi 39.8 4E+02 0.0086 26.8 11.4 43 130-173 185-231 (473)
483 PRK06125 short chain dehydroge 39.8 1.1E+02 0.0024 27.1 7.0 32 136-167 8-39 (259)
484 PRK06180 short chain dehydroge 39.7 2.2E+02 0.0048 25.5 9.1 64 136-202 5-69 (277)
485 cd08550 GlyDH-like Glycerol_de 39.4 1.4E+02 0.0031 28.3 8.0 33 241-276 77-109 (349)
486 PRK08248 O-acetylhomoserine am 39.1 2.2E+02 0.0047 28.1 9.4 78 138-221 81-162 (431)
487 PF00208 ELFV_dehydrog: Glutam 39.0 1.2E+02 0.0026 27.6 7.0 51 116-166 11-62 (244)
488 PRK12770 putative glutamate sy 39.0 1.2E+02 0.0027 28.6 7.5 52 137-188 173-230 (352)
489 PRK01713 ornithine carbamoyltr 38.9 1.3E+02 0.0029 28.7 7.6 53 138-190 158-218 (334)
490 COG0836 {ManC} Mannose-1-phosp 38.8 85 0.0018 30.0 6.1 54 138-207 80-137 (333)
491 PF08323 Glyco_transf_5: Starc 38.8 38 0.00083 30.6 3.8 98 143-255 17-147 (245)
492 PRK15454 ethanol dehydrogenase 38.8 2.1E+02 0.0046 27.9 9.2 27 231-261 98-124 (395)
493 PLN02450 1-aminocyclopropane-1 38.5 4.1E+02 0.0088 26.4 12.0 78 109-190 84-165 (468)
494 PTZ00188 adrenodoxin reductase 38.5 2.2E+02 0.0048 29.0 9.4 34 137-170 40-74 (506)
495 COG0240 GpsA Glycerol-3-phosph 38.4 3.7E+02 0.008 25.8 10.8 31 138-168 3-33 (329)
496 PRK07201 short chain dehydroge 38.3 1.5E+02 0.0032 30.5 8.4 67 136-202 372-439 (657)
497 PRK05479 ketol-acid reductoiso 38.3 3.6E+02 0.0079 25.8 11.4 119 137-284 18-138 (330)
498 PF11814 DUF3335: Peptidase_C3 38.3 71 0.0015 28.5 5.2 33 137-169 43-77 (207)
499 TIGR03537 DapC succinyldiamino 38.2 3.4E+02 0.0074 25.4 12.5 108 109-222 34-150 (350)
500 PF01494 FAD_binding_3: FAD bi 38.2 47 0.001 30.5 4.4 27 139-165 4-30 (356)
No 1
>PRK07591 threonine synthase; Validated
Probab=100.00 E-value=1.4e-55 Score=430.30 Aligned_cols=277 Identities=17% Similarity=0.177 Sum_probs=237.6
Q ss_pred cCCCCcccccCCCCCccccccCcCccchH--------HHhhccccccccc--CCCcccccccCCCCCCCccccchhhhcc
Q 021570 10 SPLTAPLCISKKSSLATLKLGYISPITAA--------RRLKQNLYKVSYK--PCNSVVCKAVSVKPQTGIEGLNIAEDVT 79 (311)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~--~~~~wRy~~llP~~~~~~~~~~~~~~i~ 79 (311)
++...-.|+.|..+|+.... |.+|.+.. +.++....+..+. ..++|||+++||+++ ...++
T Consensus 14 ~~~~~l~C~~Cg~~~~~~~~-~~C~~cg~~l~~~y~~~~~~~~~~~~~~~~~~~~~wry~~~lp~~~--------~~~v~ 84 (421)
T PRK07591 14 GPAVALKCRECGAEYPLGPI-HVCEECFGPLEVAYDYDAIRKRVSRESIEAGPKSIWRYRDLLPVPA--------DNPVD 84 (421)
T ss_pred cceeEEEeCCCCCcCCCCCC-ccCCCCCCeEEEEechhhhccccChhhhhccccchhcchhhCcccc--------CCCCc
Confidence 55566779999999987655 88886532 2222222222222 248999999999831 12488
Q ss_pred cccCCCceeecccccccCCC-eEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHHHHHHHHHc
Q 021570 80 QLIGKTPMVYLNTIVKGCVA-NIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASK 158 (311)
Q Consensus 80 ~~~g~TPL~~~~~l~~~~g~-~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~ 158 (311)
+++|+|||+++++|++.+|. +||+|+|++|||||||||++.+++.+|++.|. ++|+++|+||||+|+|++|+++
T Consensus 85 l~eG~TPLv~~~~l~~~lG~~~l~~K~E~~nPtGSfKdRga~~~v~~A~~~g~-----~~vv~aSsGN~g~alA~~aa~~ 159 (421)
T PRK07591 85 LGPGFTPLVKADRLARELGLKNLYIKDDSVNPTHSFKDRVVSVALTAARELGF-----TTVACASTGNLANSVAAHAARA 159 (421)
T ss_pred CCCCCCcceEhHHHHHHhCCCcEEEEeCCCCCccChHHHHHHHHHHHHHHcCC-----CEEEEeCCCHHHHHHHHHHHHc
Confidence 99999999999999998885 99999999999999999999999999999995 6799999999999999999999
Q ss_pred CCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCCCCCCcchHhhHHHHHHHHHHHc
Q 021570 159 GYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEIWEDT 238 (311)
Q Consensus 159 Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~t~a~Ei~~Ql 238 (311)
|++|+||||+++++.|+.+++.|||+|+.++++ ++++.+.+.+++++.++++|++++.||+.++ |++|+++||++|+
T Consensus 160 Gl~~~I~vP~~~~~~k~~~~~~~GA~Vi~v~g~--~d~a~~~a~~~~~~~~~~~~~n~~~~p~~ie-G~~Tia~Ei~eQl 236 (421)
T PRK07591 160 GLDSCVFIPADLEAGKIVGTLVYGPTLVAVDGN--YDDVNRLCSELANEHEGWGFVNINLRPYYAE-GSKTLGYEVAEQL 236 (421)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhcCCEEEecCCCCccccc-chHHHHHHHHHHc
Confidence 999999999999999999999999999999987 8999999999988765789999988999995 9999999999999
Q ss_pred CCC-CCEEEEccChhhHHHHHHHHHHhc-------CCCCEEEEEeCCCCchhhhcCC--------CCCccccccccCCcc
Q 021570 239 RGK-VDIFIGGIGTGGTISGAGRYLKEK-------NPNIKVIIFVLFISKPYLACVP--------YPPPSLCLTCQSESV 302 (311)
Q Consensus 239 ~~~-pD~vv~pvG~Gg~~~Gi~~~lk~~-------~p~~~iigVe~~~s~~~~~~~~--------~~~~tiadgl~~~~~ 302 (311)
++. ||+||+|+|+||+++|++++|+++ .+.+|||+|||++++++.+++. ...+|+|+||+++.+
T Consensus 237 ~~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~Vq~~g~~~~~~~~~~g~~~~~~~~~~tia~~l~~~~p 316 (421)
T PRK07591 237 GWRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGAQAEGCSPIAQAFKEGRDVVKPVKPNTIAKSLAIGNP 316 (421)
T ss_pred CCCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEEEecCCCCHHHHHHHcCCCcccCCCCCchhhheecCCC
Confidence 865 999999999999999999999997 5789999999999999987532 246899999988775
Q ss_pred c
Q 021570 303 L 303 (311)
Q Consensus 303 ~ 303 (311)
.
T Consensus 317 ~ 317 (421)
T PRK07591 317 A 317 (421)
T ss_pred C
Confidence 3
No 2
>PRK08197 threonine synthase; Validated
Probab=100.00 E-value=2.7e-55 Score=425.39 Aligned_cols=273 Identities=19% Similarity=0.175 Sum_probs=232.6
Q ss_pred CcccccCCCCCccccccCcCccc--------hHHHhhccccccccc--CCCcccccccCCCCCCCccccchhhhcccccC
Q 021570 14 APLCISKKSSLATLKLGYISPIT--------AARRLKQNLYKVSYK--PCNSVVCKAVSVKPQTGIEGLNIAEDVTQLIG 83 (311)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~--~~~~wRy~~llP~~~~~~~~~~~~~~i~~~~g 83 (311)
.-.|+.|..++......|.+ .+ ++..+++.+....+. ..++|||+++||++. ....+++++|
T Consensus 7 ~~~C~~Cg~~~~~~~~~~~C-~cg~~l~~~~d~~~~~~~~~~~~~~~~~~~~~ry~~~lp~~~-------~~~~vslgeG 78 (394)
T PRK08197 7 HLECSKCGETYDADQVHNLC-KCGKPLLVRYDLEAVKQAVTREALAGRPANLWRYHELLPVRD-------PEHIVSLGEG 78 (394)
T ss_pred EEEECCCCCCCCCCCcceec-CCCCeeEEEechhhhhhccchhhhccCCcchhcchhhCCCCC-------CCCCCccCcC
Confidence 35688888888776666766 33 223223223222222 238999999999831 1235889999
Q ss_pred CCceeecccccccCCC-eEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeE
Q 021570 84 KTPMVYLNTIVKGCVA-NIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKL 162 (311)
Q Consensus 84 ~TPL~~~~~l~~~~g~-~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~ 162 (311)
+|||++++++++.+|. +||+|+|++|||||||||++.+++.+|++.|. ++|+++|+||||+|+|++|+++|++|
T Consensus 79 ~TPL~~~~~l~~~~G~~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~aa~~G~~~ 153 (394)
T PRK08197 79 MTPLLPLPRLGKALGIGRLWVKDEGLNPTGSFKARGLAVGVSRAKELGV-----KHLAMPTNGNAGAAWAAYAARAGIRA 153 (394)
T ss_pred CCCceEhHHHHHHhCCCcEEEEeCCCCCCcCcHHhHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHHHHcCCcE
Confidence 9999999999988885 99999999999999999999999999999995 78999999999999999999999999
Q ss_pred EEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCCCCCCcchHhhHHHHHHHHHHHcCCC-
Q 021570 163 ILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEIWEDTRGK- 241 (311)
Q Consensus 163 ~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~t~a~Ei~~Ql~~~- 241 (311)
+||||+++++.|+.+++.|||+|+.++++ ++++.+.+.+++++. ++|+++++.||++++ |++|+++||++|+++.
T Consensus 154 ~v~vp~~~~~~k~~~~~~~GA~Vi~v~~~--~~~~~~~a~~~~~~~-g~~~~~~~~np~~ie-G~~t~a~Ei~eQl~~~~ 229 (394)
T PRK08197 154 TIFMPADAPEITRLECALAGAELYLVDGL--ISDAGKIVAEAVAEY-GWFDVSTLKEPYRIE-GKKTMGLELAEQLGWRL 229 (394)
T ss_pred EEEEcCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhc-CcccccCCCCccchh-cHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999986 788999998888775 789999999999995 9999999999999864
Q ss_pred CCEEEEccChhhHHHHHHHHHHhc-------CCCCEEEEEeCCCCchhhhcCC---------CCCccccccccCCccc
Q 021570 242 VDIFIGGIGTGGTISGAGRYLKEK-------NPNIKVIIFVLFISKPYLACVP---------YPPPSLCLTCQSESVL 303 (311)
Q Consensus 242 pD~vv~pvG~Gg~~~Gi~~~lk~~-------~p~~~iigVe~~~s~~~~~~~~---------~~~~tiadgl~~~~~~ 303 (311)
||+||+|+|+|++++|++++|+++ .+.+|||+|||++++++.+++. ..++|+|+|++++.+.
T Consensus 230 pD~vvvpvG~Gg~~~Gi~~~~k~~~~~g~~~~~~p~ii~Vq~~g~~~l~~~~~~g~~~~~~~~~~~tia~gl~~~~~~ 307 (394)
T PRK08197 230 PDVILYPTGGGVGLIGIWKAFDELEALGWIGGKRPRLVAVQAEGCAPIVKAWEEGKEESEFWEDAHTVAFGIRVPKAL 307 (394)
T ss_pred CCEEEEeCCChHHHHHHHHHHHHHHHcCCcCCCCCeEEEEEeCCCCHHHHHHHcCCCccccCCCCCceehhhhCCCCC
Confidence 999999999999999999999986 3788999999999999987521 2468999999988764
No 3
>PRK06260 threonine synthase; Validated
Probab=100.00 E-value=8.1e-54 Score=415.41 Aligned_cols=267 Identities=21% Similarity=0.180 Sum_probs=226.8
Q ss_pred ccccCCCCCccccccCcCccchHHHhhcccccc----cccCCCcccccccCCCCCCCccccchhhhcccccCCCceeecc
Q 021570 16 LCISKKSSLATLKLGYISPITAARRLKQNLYKV----SYKPCNSVVCKAVSVKPQTGIEGLNIAEDVTQLIGKTPMVYLN 91 (311)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~wRy~~llP~~~~~~~~~~~~~~i~~~~g~TPL~~~~ 91 (311)
.|+.|..+++...+.|.+|.+..- +.-..... +-...++|||+++||++ ...+++++|+|||++++
T Consensus 5 ~C~~cg~~~~~~~~~~~Cp~cg~~-l~~~y~~~~~~~~~~~~~~wry~~~lp~~---------~~~v~l~~G~TPLv~~~ 74 (397)
T PRK06260 5 KCIECGKEYDPDEIIYTCPECGGL-LEVIYDLDKIFDKLRGRGVWRYKELLPVK---------KKIVSLNEGGTPLYRCP 74 (397)
T ss_pred EECCCCCCCCCCCccccCCCCCCe-EEEEecchhhhhccCCcceeeehhhcCCC---------CCcccCCCCCCCeEEch
Confidence 578888888776677888765321 11111100 11124899999999982 13588999999999999
Q ss_pred cccccCCC-eEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCC-
Q 021570 92 TIVKGCVA-NIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPAS- 169 (311)
Q Consensus 92 ~l~~~~g~-~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~- 169 (311)
++++.+|. +||+|+|++|||||||||++.++|.+|++.|. ++|+++|+||||+|+|++|+++|++|+||||++
T Consensus 75 ~l~~~~g~~~l~~K~E~~nPTGSfKdRga~~~v~~a~~~g~-----~~vv~aSsGN~g~alA~~aa~~G~~~~i~vP~~~ 149 (397)
T PRK06260 75 NLEKELGVKELYVKHEGANPTGSFKDRGMTVGVTKALELGV-----KTVACASTGNTSASLAAYAARAGLKCYVLLPAGK 149 (397)
T ss_pred hhHHHhCCCcEEEEeCCCCCCcCcHHHHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHHHHcCCcEEEEEeCCC
Confidence 99988887 99999999999999999999999999999995 689999999999999999999999999999997
Q ss_pred CCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCCCCCCcchHhhHHHHHHHHHHHcCC-CCCEEEEc
Q 021570 170 MSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEIWEDTRG-KVDIFIGG 248 (311)
Q Consensus 170 ~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~t~a~Ei~~Ql~~-~pD~vv~p 248 (311)
++..|+.+++.|||+|+.++++ ++++++.+++++++. ++|+++++ ||++++ ||+|+++||++|+++ .||+||+|
T Consensus 150 ~~~~k~~~~~~~GA~vi~v~~~--~~~~~~~a~~~~~~~-g~y~~~~~-np~~~~-G~~t~a~Ei~eQl~~~~pd~vvvp 224 (397)
T PRK06260 150 VALGKLAQALLHGAKVLEVDGN--FDDALDMVVELAKEG-KIYLLNSI-NPFRLE-GQKTIGFEIADQLGWEVPDRVVLP 224 (397)
T ss_pred ccHHHHHHHHhcCCEEEEECCc--HHHHHHHHHHHHhhC-CEEeecCC-Cchhhc-chhhHHHHHHHHhCCCCCCEEEEe
Confidence 7999999999999999999986 899999999988875 78888887 999995 999999999999987 69999999
Q ss_pred cChhhHHHHHHHHHHhcC------CCCEEEEEeCCCCchhhhcCC---------CCCccccccccCCcc
Q 021570 249 IGTGGTISGAGRYLKEKN------PNIKVIIFVLFISKPYLACVP---------YPPPSLCLTCQSESV 302 (311)
Q Consensus 249 vG~Gg~~~Gi~~~lk~~~------p~~~iigVe~~~s~~~~~~~~---------~~~~tiadgl~~~~~ 302 (311)
+|+||+++|++++|+++. +.+|||+|||++++++.+++. ..++|+|+|+.++.+
T Consensus 225 vG~Gg~~~Gi~~~~~~l~~~G~i~~~prii~Vq~~g~~~~~~a~~~g~~~~~~~~~~~tia~~i~i~~p 293 (397)
T PRK06260 225 VGNAGNISAIWKGFKELVELGIIDKLPKMTGIQAEGAAPIVEAIKKGKDEIEPVENPETVATAIRIGNP 293 (397)
T ss_pred CCcHHHHHHHHHHHHHHHhcCCcCCCCeEEEEecCCCcHHHHHHHcCCCcccccCCCCceeeeeEeCCC
Confidence 999999999999999875 236999999999999976521 247899999988654
No 4
>PLN02569 threonine synthase
Probab=100.00 E-value=1.6e-52 Score=413.15 Aligned_cols=281 Identities=16% Similarity=0.117 Sum_probs=232.4
Q ss_pred cCCCCcccccCCCCCccccccCcCccc--------hHHHhh---ccccccc---------cc-CCCcccccc-cCCCCCC
Q 021570 10 SPLTAPLCISKKSSLATLKLGYISPIT--------AARRLK---QNLYKVS---------YK-PCNSVVCKA-VSVKPQT 67 (311)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~---~~~~~~~---------~~-~~~~wRy~~-llP~~~~ 67 (311)
+..+.-.|+.|..+|+.....|.++ + +++.++ ...++.. +. ..++|||++ +||..+
T Consensus 45 ~~~~~l~C~~Cg~~y~~~~~~~~C~-cgg~l~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~wry~~~~lP~~~- 122 (484)
T PLN02569 45 KYVPFLECPLTGEKYSLDEVVYRSK-SGGLLDVRHDMEALKRYDGKYWRALFDSRVGKTTWPYGSGVWSKKEWVLPEID- 122 (484)
T ss_pred ccccccEeCCCCCcCCCccccccCC-CCCeEEEecchhhhccccchhhhhhHhcccccccCCCCCCccccccccCCCCC-
Confidence 3445567999999998888888883 3 222121 1111111 11 137999999 789731
Q ss_pred CccccchhhhcccccCCCceeeccccccc-CCC-eEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcC
Q 021570 68 GIEGLNIAEDVTQLIGKTPMVYLNTIVKG-CVA-NIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSG 145 (311)
Q Consensus 68 ~~~~~~~~~~i~~~~g~TPL~~~~~l~~~-~g~-~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsG 145 (311)
....+++++|+|||++++++.+. +|. +||+|+|++|||||||||++.+++..+.+.|........|+++|+|
T Consensus 123 ------~~~~vsl~eG~TPLv~~~~l~~~~~G~~~l~~K~E~~nPTGSFKDRga~~~vs~a~~~g~~~~~~~~Vv~ASSG 196 (484)
T PLN02569 123 ------DDDIVSLFEGNSNLFWAERLGKEFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMAKPVVGVGCASTG 196 (484)
T ss_pred ------cccceecCCCCCceeEhhhhhHhhcCCccEEEEECCCCCCcCHHHHHHHHHHHHHHHhhhccCCccEEEEeCCc
Confidence 12348999999999999999887 785 9999999999999999999999999999877532212579999999
Q ss_pred hHHHHHHHHHHHcCCeEEEEECCC-CCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCCCCCCcchH
Q 021570 146 NTGIGLAFIAASKGYKLILTMPAS-MSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPK 224 (311)
Q Consensus 146 N~g~AlA~~aa~~Gi~~~vv~p~~-~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~ 224 (311)
|||.|+|++|+++|++|+||||++ .+..|+.+++.|||+|+.++++ |+++++.+++++++. ++|+++++ ||++++
T Consensus 197 N~GaAlAayaa~~Gl~~~I~vP~~~~~~~k~~qi~a~GA~Vi~v~g~--~d~a~~~a~e~~~~~-~~~~~n~~-Np~~ie 272 (484)
T PLN02569 197 DTSAALSAYCAAAGIPSIVFLPADKISIAQLVQPIANGALVLSIDTD--FDGCMRLIREVTAEL-PIYLANSL-NSLRLE 272 (484)
T ss_pred HHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHHHHHhcCCEEEEECCC--HHHHHHHHHHHHHHc-CCEecCCC-CcchhH
Confidence 999999999999999999999996 8889999999999999999987 899999999988775 68889987 999995
Q ss_pred hhHHHHHHHHHHHcCCC-CCEEEEccChhhHHHHHHHHHHhcC------CCCEEEEEeCCCCchhhhcCC---------C
Q 021570 225 IHYETTGPEIWEDTRGK-VDIFIGGIGTGGTISGAGRYLKEKN------PNIKVIIFVLFISKPYLACVP---------Y 288 (311)
Q Consensus 225 ~G~~t~a~Ei~~Ql~~~-pD~vv~pvG~Gg~~~Gi~~~lk~~~------p~~~iigVe~~~s~~~~~~~~---------~ 288 (311)
||+|+++||++|++++ ||+||+|+|+||+++|++++||++. +.+|||+|||++++|+.+++. .
T Consensus 273 -G~kT~a~EI~eQl~~~~pD~VvvPvG~Gg~l~Gi~kgfkel~~~G~i~~~Priv~Vqa~g~~pl~~a~~~G~~~~~~~~ 351 (484)
T PLN02569 273 -GQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCKELGLVDRLPRLVCAQAANANPLYRAYKSGWEEFKPVK 351 (484)
T ss_pred -hHHHHHHHHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHHcCCCCCCCeEEEEeeCCCcHHHHHHHcCCCccccCC
Confidence 9999999999999875 9999999999999999999999863 456999999999999986521 2
Q ss_pred CCccccccccCCccc
Q 021570 289 PPPSLCLTCQSESVL 303 (311)
Q Consensus 289 ~~~tiadgl~~~~~~ 303 (311)
..+|+|+||+++.+.
T Consensus 352 ~~~T~A~gi~i~~P~ 366 (484)
T PLN02569 352 ANPTFASAIQIGDPV 366 (484)
T ss_pred CCCccchhhccCCCc
Confidence 478999999988654
No 5
>PRK05638 threonine synthase; Validated
Probab=100.00 E-value=8.8e-53 Score=413.22 Aligned_cols=230 Identities=18% Similarity=0.174 Sum_probs=207.9
Q ss_pred CCcccccccCCCCCCCccccchhhhcccccCCCceeecccccccCCCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCC
Q 021570 53 CNSVVCKAVSVKPQTGIEGLNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLI 132 (311)
Q Consensus 53 ~~~wRy~~llP~~~~~~~~~~~~~~i~~~~g~TPL~~~~~l~~~~g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~ 132 (311)
.++|||++|||+. ...+++++|+|||++++ +.+.+|.+||+|+|++|||||||||++.++|.+|++.|.
T Consensus 44 ~~~wry~~~lp~~---------~~~v~l~~G~TPLv~~~-~~~~~g~~l~~K~E~~nPtGSfKdR~a~~~i~~a~~~g~- 112 (442)
T PRK05638 44 PGVWRYKELLPQV---------KKIISLGEGGTPLIRAR-ISEKLGENVYIKDETRNPTGSFRDRLATVAVSYGLPYAA- 112 (442)
T ss_pred CChhhhhhhCCCc---------CCccccCCCCCcEEccc-chHHhCCeEEEEeCCCCCCCChHHHHHHHHHHHHHHcCC-
Confidence 4899999999983 13478999999999984 666778899999999999999999999999999999884
Q ss_pred CCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCce
Q 021570 133 TPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAY 212 (311)
Q Consensus 133 ~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~ 212 (311)
++|+++|+||||+|+|++|+++|++|+||||+++++.|+.+++.|||+|+.++++ ++++++.+++++++. ++|
T Consensus 113 ----~~vv~aSsGN~g~alA~~aa~~G~~~~i~vp~~~~~~k~~~~~~~GA~vi~v~~~--~~~~~~~a~~~~~~~-~~~ 185 (442)
T PRK05638 113 ----NGFIVASDGNAAASVAAYSARAGKEAFVVVPRKVDKGKLIQMIAFGAKIIRYGES--VDEAIEYAEELARLN-GLY 185 (442)
T ss_pred ----CEEEEeCCChHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHhcCcEEEEECCC--HHHHHHHHHHHHHhC-CeE
Confidence 7799999999999999999999999999999999999999999999999999876 899999999988765 789
Q ss_pred eeCCCCCCcchHhhHHHHHHHHHHHcCCCCCEEEEccChhhHHHHHHHHHHhcCC------CCEEEEEeCCCCchhhhcC
Q 021570 213 MLQQFDNPANPKIHYETTGPEIWEDTRGKVDIFIGGIGTGGTISGAGRYLKEKNP------NIKVIIFVLFISKPYLACV 286 (311)
Q Consensus 213 ~~~~~~n~~~~~~G~~t~a~Ei~~Ql~~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p------~~~iigVe~~~s~~~~~~~ 286 (311)
++++++||++++ ||+|+++||++|++ ||+||+|+|+||+++|++++|+++.+ .+|||+|||++++|+.+++
T Consensus 186 ~~~~~~np~~~e-G~~t~a~Ei~eq~~--pD~vv~pvG~Gg~~~Gi~~gfkel~~~g~i~~~prii~Vq~~~~~p~~~~~ 262 (442)
T PRK05638 186 NVTPEYNIIGLE-GQKTIAFELWEEIN--PTHVIVPTGSGSYLYSIYKGFKELLEIGVIEEIPKLIAVQTERCNPIASEI 262 (442)
T ss_pred ecCCCCChhHhh-hHHHHHHHHHHHHC--cCEEEEeCCchHHHHHHHHHHHHHHhCCcccCCCeEEEEecCCCCHHHHHH
Confidence 999999999995 99999999999996 99999999999999999999999764 3699999999999998763
Q ss_pred C----CCCccccccccCCccc
Q 021570 287 P----YPPPSLCLTCQSESVL 303 (311)
Q Consensus 287 ~----~~~~tiadgl~~~~~~ 303 (311)
. ....|+|+|+.++.+.
T Consensus 263 ~~~~~~~~~t~a~gl~~~~p~ 283 (442)
T PRK05638 263 LGNKTKCNETKALGLYVKNPV 283 (442)
T ss_pred hcCCCCCCCceeeeEeeCCCC
Confidence 2 3467999999877653
No 6
>PRK08329 threonine synthase; Validated
Probab=100.00 E-value=2e-52 Score=399.01 Aligned_cols=260 Identities=18% Similarity=0.138 Sum_probs=216.5
Q ss_pred ccccCCCCCccccccCcCccchHHHh-hccccc--ccccCCCcccccccCCCCCCCccccchhhhcccccCCCceeeccc
Q 021570 16 LCISKKSSLATLKLGYISPITAARRL-KQNLYK--VSYKPCNSVVCKAVSVKPQTGIEGLNIAEDVTQLIGKTPMVYLNT 92 (311)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~wRy~~llP~~~~~~~~~~~~~~i~~~~g~TPL~~~~~ 92 (311)
.|+.|..+++. ...|.+ .+...+. .-++.. .+-...++|||++|||+++ ...+++++|.|||+++.
T Consensus 3 ~C~~Cg~~~~~-~~~~~C-~c~~~l~~~~~~~~~~~~~~~~~~wry~~~lP~~~--------~~~~sl~eg~Tpl~~~~- 71 (347)
T PRK08329 3 RCTKCGRTYEE-KFKLRC-DCGGTLLVEREYGSFDSPREYLDMRRYIDYLPVDE--------EFLPHLTPPITPTVKRS- 71 (347)
T ss_pred CcCCCCCCcCC-CCceec-CCCCcEEEEeccccccccccccchhhhHHhCCCCC--------CCCCcCCCCCCccccCC-
Confidence 47778777775 344666 3321100 000110 0001148999999999831 12478999999999873
Q ss_pred ccccCCCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCH
Q 021570 93 IVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSL 172 (311)
Q Consensus 93 l~~~~g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~ 172 (311)
.+||+|+|++|||||||||++.+++.+|++.|. ++|+++|+||||+|+|++|+++|++|+||||+++++
T Consensus 72 ------~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~aa~~G~~~~v~vp~~~~~ 140 (347)
T PRK08329 72 ------IKVYFKLDYLQPTGSFKDRGTYVTVAKLKEEGI-----NEVVIDSSGNAALSLALYSLSEGIKVHVFVSYNASK 140 (347)
T ss_pred ------CeEEEEeCCCCCCcCCHHHHHHHHHHHHHHcCC-----CEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCChH
Confidence 489999999999999999999999999999995 679999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCCCCCCcchHhhHHHHHHHHHHHcCCCCCEEEEccChh
Q 021570 173 ERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEIWEDTRGKVDIFIGGIGTG 252 (311)
Q Consensus 173 ~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~t~a~Ei~~Ql~~~pD~vv~pvG~G 252 (311)
.|+.+++.|||+|+.++++ ++++.+.+.+++++. +.+|++++.||++++ ||+|+++||++|++ .||+||+|+|+|
T Consensus 141 ~k~~~~~~~GA~v~~v~~~--~~~~~~~a~~l~~~~-~~~~~~~~~np~~~e-G~~t~~~Ei~eql~-~pD~vvvpvG~G 215 (347)
T PRK08329 141 EKISLLSRLGAELHFVEGD--RMEVHEEAVKFSKRN-NIPYVSHWLNPYFLE-GTKTIAYEIYEQIG-VPDYAFVPVGSG 215 (347)
T ss_pred HHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhc-CCeeccCCCCchhhc-cchhHHHHHHHHcC-CCCEEEEeCCcH
Confidence 9999999999999999986 778888888888764 678899999999995 99999999999997 799999999999
Q ss_pred hHHHHHHHHHHhcC------CCCEEEEEeCCCCchhhhcCCCCCccccccccCCccc
Q 021570 253 GTISGAGRYLKEKN------PNIKVIIFVLFISKPYLACVPYPPPSLCLTCQSESVL 303 (311)
Q Consensus 253 g~~~Gi~~~lk~~~------p~~~iigVe~~~s~~~~~~~~~~~~tiadgl~~~~~~ 303 (311)
|+++|++++|+++. +.+|||+|||++++++.... ...+|+|+|++++.+.
T Consensus 216 g~l~Gi~~g~kel~~~g~i~~~p~ii~Vq~~g~~~~~~~~-~~~~t~a~gi~i~~~~ 271 (347)
T PRK08329 216 TLFLGIWKGFKELHEMGEISKMPKLVAVQAEGYESLCKRS-KSENKLADGIAIPEPP 271 (347)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCchHHhcc-CCCCceeeeEEeCCCC
Confidence 99999999999863 56799999999999997653 3568999999998864
No 7
>PRK06450 threonine synthase; Validated
Probab=100.00 E-value=2e-52 Score=397.17 Aligned_cols=251 Identities=18% Similarity=0.179 Sum_probs=211.9
Q ss_pred ccccCCCCCccccccCcCccchHHHhhcccccccccC-CCcccccccCCCCCCCccccchhhhcccccCCCceeeccccc
Q 021570 16 LCISKKSSLATLKLGYISPITAARRLKQNLYKVSYKP-CNSVVCKAVSVKPQTGIEGLNIAEDVTQLIGKTPMVYLNTIV 94 (311)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~wRy~~llP~~~~~~~~~~~~~~i~~~~g~TPL~~~~~l~ 94 (311)
.|+.|..++.. ...|.+|.+..- +.-.. ++.. .++| +++||+. ...+++++|+|||++.+
T Consensus 5 ~C~~Cg~~~~~-~~~~~C~~cg~~-l~~~~---d~~~~~~~~--~~~lp~~---------~~~vslgeG~TPLv~~~--- 65 (338)
T PRK06450 5 VCMKCGKERES-IYEIRCKKCGGP-FEILI---DFEFDKNLE--RKNFPYI---------KHFISLGEGRTPLIKKG--- 65 (338)
T ss_pred EECCcCCcCCC-cccccCCcCCCE-eEEee---cccccchhh--HhhCCCC---------cCCCCCCCCCCCceecC---
Confidence 58889888876 667888876431 11111 1111 2678 5899973 12589999999999875
Q ss_pred ccCCCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHH
Q 021570 95 KGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLER 174 (311)
Q Consensus 95 ~~~g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k 174 (311)
+||+|+|++|||||||||++.+++.+|+++|. ++|+++|+||+|.|+|++|+++|++|+||||+++++.|
T Consensus 66 -----~l~~K~E~~nPTGSfKDRga~~~i~~a~~~g~-----~~vv~aSsGN~g~slA~~aa~~G~~~~i~vP~~~~~~k 135 (338)
T PRK06450 66 -----NIWFKLDFLNPTGSYKDRGSVTLISYLAEKGI-----KQISEDSSGNAGASIAAYGAAAGIEVKIFVPETASGGK 135 (338)
T ss_pred -----CEEEEecCCCCcCCCHHHHHHHHHHHHHHcCC-----CEEEEECCcHHHHHHHHHHHHcCCCEEEEEcCCCCHHH
Confidence 69999999999999999999999999999885 67999999999999999999999999999999999999
Q ss_pred HHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCCCCCCcchHhhHHHHHHHHHHHcCC-CCCEEEEccChhh
Q 021570 175 RVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEIWEDTRG-KVDIFIGGIGTGG 253 (311)
Q Consensus 175 ~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~t~a~Ei~~Ql~~-~pD~vv~pvG~Gg 253 (311)
+.+++.|||+|+.++++ ++++.+. +++. +.+|++++.||++++ ||+|+++||++|+++ .||+||+|+|+||
T Consensus 136 ~~~i~~~GA~vi~v~~~--~~~~~~~----a~~~-g~~~~~~~~np~~ie-G~kTia~EI~eql~~~~pD~vvvpvG~Gg 207 (338)
T PRK06450 136 LKQIESYGAEVVRVRGS--REDVAKA----AENS-GYYYASHVLQPQFRD-GIRTLAYEIAKDLDWKIPNYVFIPVSAGT 207 (338)
T ss_pred HHHHHHcCCEEEEECCC--HHHHHHH----HHhc-CeEeccCCCCccHHH-HHHHHHHHHHHHcCCCCCCEEEEECCchH
Confidence 99999999999999987 6765544 3443 678999999999995 999999999999985 4999999999999
Q ss_pred HHHHHHHHHHhcCC------CCEEEEEeCCCCchhhhcCC-------CCCccccccccCCccc
Q 021570 254 TISGAGRYLKEKNP------NIKVIIFVLFISKPYLACVP-------YPPPSLCLTCQSESVL 303 (311)
Q Consensus 254 ~~~Gi~~~lk~~~p------~~~iigVe~~~s~~~~~~~~-------~~~~tiadgl~~~~~~ 303 (311)
+++|++++|+++.+ .+|||+|||++++|+.+++. ..++|+|+||+++.+.
T Consensus 208 ll~Gi~~g~~el~~~G~i~~~prii~Vq~~g~~p~~~a~~~~~~~~~~~~~tia~~l~~~~p~ 270 (338)
T PRK06450 208 LLLGVYSGFKHLLDSGVISEMPKIVAVQTEQVSPLCAKFKGISYTPPDKVTSIADALVSTRPF 270 (338)
T ss_pred HHHHHHHHHHHHHhcCCccCCCeEEEEeeCCCCHHHHHhcCCCCCCCCCCCcceeeeecCCCC
Confidence 99999999999753 36999999999999987532 3568999999988764
No 8
>PLN02565 cysteine synthase
Probab=100.00 E-value=8.1e-52 Score=390.91 Aligned_cols=231 Identities=69% Similarity=1.077 Sum_probs=206.7
Q ss_pred hhcccccCCCceeecccccccCCCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHHHHHHH
Q 021570 76 EDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIA 155 (311)
Q Consensus 76 ~~i~~~~g~TPL~~~~~l~~~~g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA~~a 155 (311)
..+...+|+|||++++++....+.+||+|+|++|||||||||+|.+++..+.++|.+.+|.+.||++|+||||+|+|++|
T Consensus 7 ~~~~~~ig~TPLv~l~~l~~~~~~~i~~K~E~~nPtGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA~~a 86 (322)
T PLN02565 7 KDVTELIGKTPLVYLNNVVDGCVARIAAKLEMMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLAFMA 86 (322)
T ss_pred hhHHHHhCCCceEEccccCCCCCceEEEEecccCCccchHHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHHHHHHH
Confidence 45778899999999988876666799999999999999999999999999999999888867899999999999999999
Q ss_pred HHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCCCCCCcchHhhHHHHHHHHH
Q 021570 156 ASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEIW 235 (311)
Q Consensus 156 a~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~t~a~Ei~ 235 (311)
+.+|++|+||||+++++.|+++++.|||+|+.++...+++++.+.+++++++.+++||++||+|+.|+..||+|+|+||+
T Consensus 87 ~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~n~~n~~~~~~t~a~Ei~ 166 (322)
T PLN02565 87 AAKGYKLIITMPASMSLERRIILLAFGAELVLTDPAKGMKGAVQKAEEILAKTPNSYILQQFENPANPKIHYETTGPEIW 166 (322)
T ss_pred HHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCCcHHHHHHHHHHHHhCCCcEeecccCCHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987655688999999998876678999999999998779999999999
Q ss_pred HHcCCCCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCCchhhhcCCCCCccccccccCCcccccccc
Q 021570 236 EDTRGKVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFISKPYLACVPYPPPSLCLTCQSESVLKLVAW 308 (311)
Q Consensus 236 ~Ql~~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s~~~~~~~~~~~~tiadgl~~~~~~~~~~~ 308 (311)
+|+++.||+||+|+|+||+++|++++||+.+|++|||+|||++|+++..+.+ . +...+||.++.+...+.|
T Consensus 167 ~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep~~s~~~~~g~~-~-~~~~~glg~~~~~~~~~~ 237 (322)
T PLN02565 167 KGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPVESAVLSGGKP-G-PHKIQGIGAGFIPGVLDV 237 (322)
T ss_pred HhcCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEecCCCccccCCCC-C-CccCCCCCCCCCCCcCCH
Confidence 9997679999999999999999999999999999999999999998854433 2 334588887655454444
No 9
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-52 Score=392.33 Aligned_cols=229 Identities=22% Similarity=0.254 Sum_probs=210.8
Q ss_pred ccccchhhhcccccCCCceeecccccccCCCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHH
Q 021570 69 IEGLNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTG 148 (311)
Q Consensus 69 ~~~~~~~~~i~~~~g~TPL~~~~~l~~~~g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g 148 (311)
.+...+..++...+.+|||++++.|++.+|.+||+|+|++||+||||.|||++.+....+++... ..||++|+||||
T Consensus 10 ~~i~~A~~ri~~~~~~TPL~~s~~Ls~~~g~~v~lK~E~lQ~~gSFK~RGA~n~i~~Ls~e~~~~---~gViaaSaGNHa 86 (347)
T COG1171 10 ADILAAAARLKGVVNPTPLQRSPSLSERLGAEIYLKRENLQPVGSFKIRGAYNKLSSLSEEEERA---AGVIAASAGNHA 86 (347)
T ss_pred HHHHHHHHHHhCcccCCCcccchhhHHhhCceEEEeeccCcccccchhhhHHHHHHhcChhhhhc---CceEEecCCcHH
Confidence 34455678899999999999999999999999999999999999999999999999976443222 459999999999
Q ss_pred HHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCCCCCCcchHhhHH
Q 021570 149 IGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYE 228 (311)
Q Consensus 149 ~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~ 228 (311)
+++|++|+++|++++||||.++|..|++.++.|||+|++++.+ |+++.+.|.++++++ |+.|+++|++|+.+ +||.
T Consensus 87 QGvA~aa~~lGi~a~IvMP~~tp~~Kv~a~r~~GaeVil~g~~--~dda~~~a~~~a~~~-G~~~i~pfD~p~vi-AGQG 162 (347)
T COG1171 87 QGVAYAAKRLGIKATIVMPETTPKIKVDATRGYGAEVILHGDN--FDDAYAAAEELAEEE-GLTFVPPFDDPDVI-AGQG 162 (347)
T ss_pred HHHHHHHHHhCCCEEEEecCCCcHHHHHHHHhcCCEEEEECCC--HHHHHHHHHHHHHHc-CCEEeCCCCCccee-eccc
Confidence 9999999999999999999999999999999999999999988 899999999999987 99999999999999 6999
Q ss_pred HHHHHHHHHcCCCCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCCchhhhcCC--------CCCccccccccCC
Q 021570 229 TTGPEIWEDTRGKVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFISKPYLACVP--------YPPPSLCLTCQSE 300 (311)
Q Consensus 229 t~a~Ei~~Ql~~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s~~~~~~~~--------~~~~tiadgl~~~ 300 (311)
|+++||++|++..||+||+|+|+||+++|++.++|.+.|++|||||||+++++|++++. ....|||||++|.
T Consensus 163 Ti~lEileq~~~~~d~v~vpvGGGGLisGia~~~k~~~p~~~vIGVEp~~a~~~~~Sl~~G~~~~~~~~~~tiaDG~av~ 242 (347)
T COG1171 163 TIALEILEQLPDLPDAVFVPVGGGGLISGIATALKALSPEIKVIGVEPEGAPSMYASLKAGKIVVVLPDVGTIADGLAVK 242 (347)
T ss_pred HHHHHHHHhccccCCEEEEecCccHHHHHHHHHHHHhCCCCeEEEEeeCCChHHHHHHHcCCceeecCCCCccccccccC
Confidence 99999999998557999999999999999999999999999999999999999998732 4589999999999
Q ss_pred cccc
Q 021570 301 SVLK 304 (311)
Q Consensus 301 ~~~~ 304 (311)
.+..
T Consensus 243 ~~g~ 246 (347)
T COG1171 243 RPGD 246 (347)
T ss_pred CCCH
Confidence 8754
No 10
>PLN03013 cysteine synthase
Probab=100.00 E-value=1.7e-51 Score=398.18 Aligned_cols=226 Identities=76% Similarity=1.167 Sum_probs=207.1
Q ss_pred hhhhcccccCCCceeecccccccCCCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHHHHH
Q 021570 74 IAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAF 153 (311)
Q Consensus 74 ~~~~i~~~~g~TPL~~~~~l~~~~g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA~ 153 (311)
+..++...+|+|||++++.+.+..+.+||+|+|++|||||||||+|.++|.+++++|.+.+|..+||++|+||||+|+|+
T Consensus 113 ~~~~i~~~iG~TPLv~l~~l~~~~g~~Iy~KlE~lNPtGSfKdR~A~~~l~~a~~~G~l~pG~~~VVeaSSGN~G~ALA~ 192 (429)
T PLN03013 113 IADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAF 192 (429)
T ss_pred HHHHHHhcCCCCCeEECcccccccCCeEEEEeccCCCccccHHHHHHHHHHHHHHcCCcCCCCcEEEEECCcHHHHHHHH
Confidence 55778999999999999999887788999999999999999999999999999999999998778999999999999999
Q ss_pred HHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCCCCCCcchHhhHHHHHHH
Q 021570 154 IAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYETTGPE 233 (311)
Q Consensus 154 ~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~t~a~E 233 (311)
+|+.+|++++||||+++++.|+++|+.|||+|+.+++..+++++++.+.+++++.+++||++||+||+++++||+|+|+|
T Consensus 193 ~a~~~G~~~~VvvP~~~s~~K~~~ira~GAeVi~v~~~~~~~~a~~~A~ela~~~~g~~~~~qy~Np~n~~ah~~ttg~E 272 (429)
T PLN03013 193 IAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPE 272 (429)
T ss_pred HHHHcCCCEEEEECCCCcHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHhhcCCeEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887667789999999988766889999999999997799999999
Q ss_pred HHHHcCCCCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCCchhhhcCCCCCccccccccCCc
Q 021570 234 IWEDTRGKVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFISKPYLACVPYPPPSLCLTCQSES 301 (311)
Q Consensus 234 i~~Ql~~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s~~~~~~~~~~~~tiadgl~~~~ 301 (311)
|++|++++||+||+|+|+||+++|++++||+.+|+++||+|||++++++..+.+ .++..+||..+.
T Consensus 273 I~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVep~gs~~l~~g~~--~~~~i~Glg~~~ 338 (429)
T PLN03013 273 IWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKP--GPHKIQGIGAGF 338 (429)
T ss_pred HHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEEeCCCchhhCCCC--CCcccCcccCCc
Confidence 999998789999999999999999999999999999999999999988854332 224457877664
No 11
>PRK06352 threonine synthase; Validated
Probab=100.00 E-value=1.6e-51 Score=393.23 Aligned_cols=233 Identities=20% Similarity=0.225 Sum_probs=208.7
Q ss_pred CCcccccccCCCCCCCccccchhhhcccccCCCceeecccccccCCCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCC
Q 021570 53 CNSVVCKAVSVKPQTGIEGLNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLI 132 (311)
Q Consensus 53 ~~~wRy~~llP~~~~~~~~~~~~~~i~~~~g~TPL~~~~~l~~~~g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~ 132 (311)
..+|||+++||+.+ ...++++++|+|||++++++++.+|.+||+|+|++|||||||||++.+++.+|.++|.
T Consensus 4 ~~~~ry~~~lp~~~-------~~~~~~l~~G~TPL~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~a~~~g~- 75 (351)
T PRK06352 4 GLLEKYKEYLPVTD-------KTPMISLAEGNTPLIPLPNLSKELGVTLYGKYEGLNPTGSFKDRGMVMAVAKAKEEGA- 75 (351)
T ss_pred chHHHHHHhCCCCC-------CcCccccCCCCCCeeEcHhhHHHhCCeEEEEecCCCCccChHHHHHHHHHHHHHHCCC-
Confidence 47999999999831 1235889999999999999998888999999999999999999999999999999985
Q ss_pred CCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCC-CCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCc
Q 021570 133 TPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPAS-MSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNA 211 (311)
Q Consensus 133 ~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~-~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~ 211 (311)
++||++|+||||+|+|++|+.+|++|+||||++ .+..|+.+++.|||+|+.++++ ++++++.+.+++++. ++
T Consensus 76 ----~~vV~aSsGN~G~AlA~~aa~~G~~~~ivvp~~~~~~~k~~~~~a~GA~V~~~~~~--~~~~~~~a~~~~~~~-~~ 148 (351)
T PRK06352 76 ----EAVICASTGNTSAAAAAYATRAGLKAYIVIPEGKVALGKLAQAVMYGADIISIQGN--FDEALKSVRELAETE-AV 148 (351)
T ss_pred ----CEEEEECCcHHHHHHHHHHHHcCCcEEEEEeCCCCcHHHHHHHHhcCCEEEEECCC--HHHHHHHHHHHHHhc-Cc
Confidence 679999999999999999999999999999997 5899999999999999999986 889999999988764 56
Q ss_pred eeeCCCCCCcchHhhHHHHHHHHHHHcCCCCCEEEEccChhhHHHHHHHHHHhcCCC-----CEEEEEeCCCCchhhhcC
Q 021570 212 YMLQQFDNPANPKIHYETTGPEIWEDTRGKVDIFIGGIGTGGTISGAGRYLKEKNPN-----IKVIIFVLFISKPYLACV 286 (311)
Q Consensus 212 ~~~~~~~n~~~~~~G~~t~a~Ei~~Ql~~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~-----~~iigVe~~~s~~~~~~~ 286 (311)
++++ +.||++++ ||+|+++||++|++..||+||+|+|+||+++|++++||+++|+ ++||+|||++++++..+.
T Consensus 149 ~~~~-~~n~~~~~-G~~t~~~EI~~Q~~~~~D~vvv~vG~GG~~~Gi~~~lk~~~~~~~~~~~~vi~Vep~g~~~~~~g~ 226 (351)
T PRK06352 149 TLVN-SVNPYRLE-GQKTAAFEICEQLGSAPDVLAIPVGNAGNISAYWKGFKEWNEAKASGLPRMHGFEAEGAAAIVQGK 226 (351)
T ss_pred cccc-CCCcccee-eHHHHHHHHHHHcCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCCCCCEEEEEeeCCCCHHHhCC
Confidence 6655 56999995 9999999999999767999999999999999999999998876 899999999999887775
Q ss_pred C-CCCccccccccCCcc
Q 021570 287 P-YPPPSLCLTCQSESV 302 (311)
Q Consensus 287 ~-~~~~tiadgl~~~~~ 302 (311)
+ ..++|+++|+.++.+
T Consensus 227 ~~~~~~~ia~~l~~~~~ 243 (351)
T PRK06352 227 PIDNPETIATAIRIGNP 243 (351)
T ss_pred CcCCCCcceeEEEeCCC
Confidence 4 346789999887654
No 12
>PRK02991 D-serine dehydratase; Provisional
Probab=100.00 E-value=2.2e-51 Score=400.93 Aligned_cols=266 Identities=17% Similarity=0.160 Sum_probs=222.1
Q ss_pred cCcCccchH---HHhhcccccccccC--CCcccccccCCCCCCCccccchhhhcccccCCCceeecccccccCC------
Q 021570 30 GYISPITAA---RRLKQNLYKVSYKP--CNSVVCKAVSVKPQTGIEGLNIAEDVTQLIGKTPMVYLNTIVKGCV------ 98 (311)
Q Consensus 30 ~~~~~~~~~---~~~~~~~~~~~~~~--~~~wRy~~llP~~~~~~~~~~~~~~i~~~~g~TPL~~~~~l~~~~g------ 98 (311)
-|+||.... ....-.+...++.. ..+++|.++||.. ......++++++|||++++.+++.+|
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~di~~A~~~i~~~~~~~~~~-------~~~~~~~~~~~~TPL~~~~~l~~~~g~~~~~~ 95 (441)
T PRK02991 23 FWFNPNYTSLAEGLPYVGLTEADVQDAEARLKRFAPYLAKA-------FPETAATGGIIESPLVAIPAMQKALEKEYGQP 95 (441)
T ss_pred eeeCCCCCchhhccccCCCCHHHHHHHHHHHHhhhhhhhhh-------CccccccCCccCCCceehHHHHHHhcccccCC
Confidence 699999332 21111111112222 1788999999862 11235678899999999999987665
Q ss_pred --CeEEEeeCCCCC-CCchhhHHHHHHHHH-----HHHcCCCCCCC----------------ceEEeeCcChHHHHHHHH
Q 021570 99 --ANIAAKLEIMEP-CCSVKDRIGFSMIAD-----AEQKGLITPGK----------------SILVEPTSGNTGIGLAFI 154 (311)
Q Consensus 99 --~~l~vK~E~~nP-tGS~KdRga~~~v~~-----A~~~G~~~~g~----------------~~vv~aSsGN~g~AlA~~ 154 (311)
.+||+|+|++|| |||||||++.++|.. +++.|.+.+|. .+||++|+||||+|+|++
T Consensus 96 ~~~~V~lK~E~~np~tGSFK~RGA~~~i~~l~~~~a~~~G~~~~~~~~~~l~~~~~~~~~~~~~VV~aSsGN~G~alA~a 175 (441)
T PRK02991 96 ISGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLDDDYSKLASPEFRQFFSQYSIAVGSTGNLGLSIGIM 175 (441)
T ss_pred cCceEEEEEcCCCCCcCChHHHHHHHHHHHhhHHHHHHhCCCCcCcchhhhcchhhhhhccCcEEEEECCcHHHHHHHHH
Confidence 699999999999 999999999999975 56888877663 379999999999999999
Q ss_pred HHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCCCCCCcchHhhHHHHHHHH
Q 021570 155 AASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEI 234 (311)
Q Consensus 155 aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~t~a~Ei 234 (311)
|+.+|++|+||||+++++.|+++++.|||+|+.++++ |+++.+.+++++++++++||++++++++.+ +||+|+|+||
T Consensus 176 A~~~G~~~tIvvP~~a~~~K~~~ir~~GAeVi~~~~~--~~~a~~~A~~la~~~~~~~~~~~~~~~~~i-aG~~Tig~EI 252 (441)
T PRK02991 176 SAALGFKVTVHMSADARQWKKDKLRSHGVTVVEYEGD--YGVAVEEGRKAAESDPNCYFIDDENSRTLF-LGYAVAGLRL 252 (441)
T ss_pred HHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECCC--HHHHHHHHHHHHHhcCCeEeCCCCCchhHH-HhHHHHHHHH
Confidence 9999999999999999999999999999999999987 899999999998876578999999888888 5999999999
Q ss_pred HHHcCC--------CCCEEEEccChhhHHHHHHHHHHhc-CCCCEEEEEeCCCCchhhhcCC-------C------CCcc
Q 021570 235 WEDTRG--------KVDIFIGGIGTGGTISGAGRYLKEK-NPNIKVIIFVLFISKPYLACVP-------Y------PPPS 292 (311)
Q Consensus 235 ~~Ql~~--------~pD~vv~pvG~Gg~~~Gi~~~lk~~-~p~~~iigVe~~~s~~~~~~~~-------~------~~~t 292 (311)
++|+++ .||+||+|+|+||+++|++++||++ .|+++||+|||++++++..++. . ..+|
T Consensus 253 ~eQl~~~~~~vD~~~Pd~VvvpvGgGGliaGia~~lk~~~~~~~kVigVEp~ga~~~~~s~~~G~~~~~~~~~~g~~~~T 332 (441)
T PRK02991 253 KAQLAEQGIVVDADHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGLMTGLHDQISVQDIGIDNLT 332 (441)
T ss_pred HHHhhhccCccccCCCCEEEEEeCccHHHHHHHHHHHHhcCCCCEEEEEecCCChHHHHHHhcCCCcceeccccCCCCcc
Confidence 999963 2779999999999999999999997 6889999999999999876521 1 2579
Q ss_pred ccccccCCccccc
Q 021570 293 LCLTCQSESVLKL 305 (311)
Q Consensus 293 iadgl~~~~~~~~ 305 (311)
+||||+++.+..+
T Consensus 333 iadgl~~~~~~~~ 345 (441)
T PRK02991 333 AADGLAVGRASGF 345 (441)
T ss_pred hhhhhcCCCcchh
Confidence 9999999988764
No 13
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-50 Score=372.08 Aligned_cols=222 Identities=52% Similarity=0.829 Sum_probs=202.2
Q ss_pred hcccccCCCceeecccccccCCCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHHHHHHHH
Q 021570 77 DVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAA 156 (311)
Q Consensus 77 ~i~~~~g~TPL~~~~~l~~~~g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa 156 (311)
.+...+|+|||++++++....+++||+|+|++||+||.|||.+.+||.+|+++|.++|| .+||++||||+|++||+.|+
T Consensus 4 ~~~~~iG~TPlvrL~~~~~~~~~~i~~KlE~~NP~gSvKDR~A~~mI~~Ae~~G~l~pG-~tIVE~TSGNTGI~LA~vaa 82 (300)
T COG0031 4 SILDLIGNTPLVRLNRLSPGTGVEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLLKPG-GTIVEATSGNTGIALAMVAA 82 (300)
T ss_pred chHHHhCCCCcEeecccCCCCCceEEEEhhhcCCCCchhHHHHHHHHHHHHHcCCCCCC-CEEEEcCCChHHHHHHHHHH
Confidence 35677899999999999988889999999999999999999999999999999999999 69999999999999999999
Q ss_pred HcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCC-hHHHHHHHHHHHHhCCC-ceeeCCCCCCcchHhhHHHHHHHH
Q 021570 157 SKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKG-MKGAVQKAEEILNSTPN-AYMLQQFDNPANPKIHYETTGPEI 234 (311)
Q Consensus 157 ~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~-~~~a~~~a~~~~~~~~~-~~~~~~~~n~~~~~~G~~t~a~Ei 234 (311)
.+|+++++|||++++.+|+++|++|||+|+.++...+ +.++++++++++++.++ .++.+||+||.|+++||.|+|.||
T Consensus 83 ~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~~~g~~~~a~~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~~tT~~EI 162 (300)
T COG0031 83 AKGYRLIIVMPETMSQERRKLLRALGAEVILTPGAPGNMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTGPEI 162 (300)
T ss_pred HcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCCCCCchHHHHHHHHHHHHhCCCceEchhhcCCCccHHHHHhhhHHHH
Confidence 9999999999999999999999999999999998555 88999999999998888 677789999999999999999999
Q ss_pred HHHcCCCCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCCchhhhcCCCCCccccccccCCcc
Q 021570 235 WEDTRGKVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFISKPYLACVPYPPPSLCLTCQSESV 302 (311)
Q Consensus 235 ~~Ql~~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s~~~~~~~~~~~~tiadgl~~~~~ 302 (311)
++|+++.+|+||+++|||||++|++++||+.+|++++|+|||++|+.+..+. .+..-.||..+.+
T Consensus 163 ~~~~~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S~~~~~G~---g~~~i~GIG~~~i 227 (300)
T COG0031 163 WQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLSGGE---GPHKIEGIGAGFV 227 (300)
T ss_pred HHHhCCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCCcccCCCC---CCcccCCCCCCcC
Confidence 9999888999999999999999999999999999999999999997775432 2233345544443
No 14
>PLN00011 cysteine synthase
Probab=100.00 E-value=5.7e-50 Score=378.71 Aligned_cols=228 Identities=62% Similarity=0.990 Sum_probs=204.9
Q ss_pred hhcccccCCCceeecccccccCCCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHHHHHHH
Q 021570 76 EDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIA 155 (311)
Q Consensus 76 ~~i~~~~g~TPL~~~~~l~~~~g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA~~a 155 (311)
+.+...+|+|||++++++....|.+||+|+|++|||||||||++.+++.+|+++|.+.||.++||++|+||||+|+|++|
T Consensus 9 ~~~~~~~g~TPl~~l~~l~~~~g~~i~~K~E~~nPtGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~alA~~a 88 (323)
T PLN00011 9 NDVTELIGNTPMVYLNNIVDGCVARIAAKLEMMEPCSSVKDRIAYSMIKDAEDKGLITPGKSTLIEATAGNTGIGLACIG 88 (323)
T ss_pred hhHHHHhCCCceEEccccCCCCCceEEEEecccCCccccchHHHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHH
Confidence 44667899999999999887667899999999999999999999999999999999998867899999999999999999
Q ss_pred HHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCCCCCCcchHhhHHHHHHHHH
Q 021570 156 ASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEIW 235 (311)
Q Consensus 156 a~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~t~a~Ei~ 235 (311)
+.+|++|+||||+++++.|+++++.|||+|+.++.+...++.++++.+++++.++++|++||+|+.++..||+++|+||+
T Consensus 89 ~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~n~~n~~~~~~t~~~EI~ 168 (323)
T PLN00011 89 AARGYKVILVMPSTMSLERRIILRALGAEVHLTDQSIGLKGMLEKAEEILSKTPGGYIPQQFENPANPEIHYRTTGPEIW 168 (323)
T ss_pred HHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCcChHHHHHHHHHHHHhCCCeEEeccccCCccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999997644556788888888876678999999999888779999999999
Q ss_pred HHcCCCCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCCchhhhcCCCCCccccccccCCccccc
Q 021570 236 EDTRGKVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFISKPYLACVPYPPPSLCLTCQSESVLKL 305 (311)
Q Consensus 236 ~Ql~~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s~~~~~~~~~~~~tiadgl~~~~~~~~ 305 (311)
+|++++||+||+|+|+||+++|++++||+++|++|||+|||++++++..+.+ ..++++|++++.+...
T Consensus 169 ~q~~~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvigVe~~~~~~~~~~~~--~~~~~~gl~~~~~~~~ 236 (323)
T PLN00011 169 RDSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVESAVLSGGQP--GPHLIQGIGSGIIPFN 236 (323)
T ss_pred HhcCCCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEEEecCCCcccCCCCC--CCCCCCCCCCCCCCcc
Confidence 9997689999999999999999999999999999999999999988865543 3468888888654433
No 15
>PRK08526 threonine dehydratase; Provisional
Probab=100.00 E-value=1.7e-50 Score=392.06 Aligned_cols=226 Identities=22% Similarity=0.258 Sum_probs=206.5
Q ss_pred ccccchhhhcccccCCCceeecccccccCCCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHH
Q 021570 69 IEGLNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTG 148 (311)
Q Consensus 69 ~~~~~~~~~i~~~~g~TPL~~~~~l~~~~g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g 148 (311)
.+...+..++...+++|||+++++|++.+|++||+|+|++|||||||+|++.+.+..+.+++. .+.||++|+||||
T Consensus 5 ~~i~~a~~~i~~~i~~TPl~~~~~Ls~~~g~~iylK~E~lqptGSfK~RgA~n~i~~l~~~~~----~~gVV~aSaGNhg 80 (403)
T PRK08526 5 NKIYQAKQRISGFVNKTPFAYAPFLSKISGAEVYLKKENLQITGAYKIRGAYNKIANLSEEQK----QHGVIAASAGNHA 80 (403)
T ss_pred HHHHHHHHHHhCcCCCCCccchHHHHHHhCCeEEEEecCCCCCCCCHHHHHHHHHHhccHhhc----CCEEEEECccHHH
Confidence 345567788999999999999999999889999999999999999999999999999886654 2569999999999
Q ss_pred HHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCCCCCCcchHhhHH
Q 021570 149 IGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYE 228 (311)
Q Consensus 149 ~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~ 228 (311)
+++|++|+++|++|+||||++++..|++.++.|||+|+.++.+ ++++++.+.+++++. +++|++||+|++++ +||+
T Consensus 81 ~avA~aa~~~Gi~~~IvmP~~~p~~k~~~~r~~GA~Vv~~g~~--~~~a~~~a~~~a~~~-g~~~v~p~~~~~~i-~G~g 156 (403)
T PRK08526 81 QGVAISAKKFGIKAVIVMPEATPLLKVSGTKALGAEVILKGDN--YDEAYAFALEYAKEN-NLTFIHPFEDEEVM-AGQG 156 (403)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHhCCCEEEEECCC--HHHHHHHHHHHHHhc-CCEeeCCCCCHHHH-hhhH
Confidence 9999999999999999999999999999999999999999876 899999999998875 78999999999998 5999
Q ss_pred HHHHHHHHHcCCCCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCCchhhhcC-------CCCCccccccccCCc
Q 021570 229 TTGPEIWEDTRGKVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFISKPYLACV-------PYPPPSLCLTCQSES 301 (311)
Q Consensus 229 t~a~Ei~~Ql~~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s~~~~~~~-------~~~~~tiadgl~~~~ 301 (311)
|+|+||++|++ .||+||+|+|+||+++|++.+||+.+|++|||||||++++++..++ ....+|+|||++++.
T Consensus 157 tia~EI~eq~~-~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvigVep~~~~~~~~s~~~g~~~~~~~~~tiadgiav~~ 235 (403)
T PRK08526 157 TIALEMLDEIS-DLDMVVVPVGGGGLISGIASAAKQINPNIKIIGVGAKGAPAMYESFHAKKIINSKSVRTIADGIAVRD 235 (403)
T ss_pred HHHHHHHHhcC-CCCEEEEecChHHHHHHHHHHHHHhCCCCEEEEEEECCCChHHHHHHcCCcccCCCCCceeccccCCC
Confidence 99999999996 6999999999999999999999999999999999999999997553 145789999999876
Q ss_pred cc
Q 021570 302 VL 303 (311)
Q Consensus 302 ~~ 303 (311)
+.
T Consensus 236 ~~ 237 (403)
T PRK08526 236 AS 237 (403)
T ss_pred CC
Confidence 54
No 16
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=100.00 E-value=2.2e-50 Score=392.63 Aligned_cols=226 Identities=19% Similarity=0.201 Sum_probs=199.9
Q ss_pred cccccCCCceeecccccccC--------CCeEEEeeCCCCC-CCchhhHHHHHHHHH-----HHHcCCCCCCC-------
Q 021570 78 VTQLIGKTPMVYLNTIVKGC--------VANIAAKLEIMEP-CCSVKDRIGFSMIAD-----AEQKGLITPGK------- 136 (311)
Q Consensus 78 i~~~~g~TPL~~~~~l~~~~--------g~~l~vK~E~~nP-tGS~KdRga~~~v~~-----A~~~G~~~~g~------- 136 (311)
-+.++++|||++++++++.+ +.+||+|+|++|| |||||||++.++|.. |++.|.+++++
T Consensus 64 ~~~~~~~TPL~~~~~ls~~~~~~~~~~~~~~v~lKlE~~nP~tGSfKdRGA~~~i~~~~~~~A~~~G~l~~~~~~~~l~e 143 (431)
T TIGR02035 64 ATGGIIESPLVEIFNMQKELEKKYQQEIPGRLLLKMDSHLPISGSIKARGGIYEVLKHAEELALEAGLLKLDDDYSILAE 143 (431)
T ss_pred ccCCccCCCccchHHHHHHhhhcccCCcCceEEEEecccCCccCCcHHHHHHHHHHHhhHHHHHHcCCCCcCcchhhhcc
Confidence 45689999999999998744 4699999999999 999999999999975 77899988764
Q ss_pred ---------ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHh
Q 021570 137 ---------SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNS 207 (311)
Q Consensus 137 ---------~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~ 207 (311)
.+||++|+||||+|+|++|+.+|++|+||||+++++.|+++++.|||+|+.++++ |+++++.+++++++
T Consensus 144 ~~~~~~~~~~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~~~K~~~ir~~GAeVv~~~~~--~~~a~~~A~~la~~ 221 (431)
T TIGR02035 144 KKFKDFFSRYSIAVGSTGNLGLSIGIISAALGFQVTVHMSADAKQWKKDKLRSKGVTVVEYESD--YGVAVEEGRKNADA 221 (431)
T ss_pred hhhhhcccCceEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHh
Confidence 4799999999999999999999999999999999999999999999999999987 89999999999988
Q ss_pred CCCceeeCCCCCCcchHhhHHHHHHHHHHHcCC--------CCCEEEEccChhhHHHHHHHHHHhc-CCCCEEEEEeCCC
Q 021570 208 TPNAYMLQQFDNPANPKIHYETTGPEIWEDTRG--------KVDIFIGGIGTGGTISGAGRYLKEK-NPNIKVIIFVLFI 278 (311)
Q Consensus 208 ~~~~~~~~~~~n~~~~~~G~~t~a~Ei~~Ql~~--------~pD~vv~pvG~Gg~~~Gi~~~lk~~-~p~~~iigVe~~~ 278 (311)
.++.||++++ |+.++.+||+|+|+||++|+++ .||+|++|+|+||+++||+++||++ +|++|||+|||++
T Consensus 222 ~~~~~~~d~~-n~~n~~aG~~T~g~EI~eQl~~~~~~~d~~~pd~V~vp~G~GGli~Gia~~lK~~~~~~vkvi~VEp~~ 300 (431)
T TIGR02035 222 DPMCYFVDDE-NSRNLFLGYAVAASRLKKQFDKKGIVVDKEHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCFFAEPTH 300 (431)
T ss_pred cCCeEECCCC-CcccHHhhHHHHHHHHHHhhhccccccccCCCCEEEEEeCcCHHHHHHHHHHHHhcCCCCEEEEEeeCC
Confidence 7677888885 4444447999999999999953 4789999999999999999999997 7999999999999
Q ss_pred CchhhhcCC-------------CCCccccccccCCcccccc
Q 021570 279 SKPYLACVP-------------YPPPSLCLTCQSESVLKLV 306 (311)
Q Consensus 279 s~~~~~~~~-------------~~~~tiadgl~~~~~~~~~ 306 (311)
++++..+.. ....|+||||++++++.+.
T Consensus 301 s~~~~~s~~~g~~~~~~~~~~g~~~~T~AdGlav~~p~~~~ 341 (431)
T TIGR02035 301 SPCMLLGVYTGLHEKISVQDIGIDNITAADGLAVGRPSGFV 341 (431)
T ss_pred CHHHHHHHhcCCCccccccccCCCCCceeccccCCCcchhH
Confidence 998866521 1357999999999987653
No 17
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=100.00 E-value=9.7e-50 Score=382.45 Aligned_cols=226 Identities=60% Similarity=0.940 Sum_probs=202.9
Q ss_pred hhhhcccccCCCceeecccccccCCCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHHHHH
Q 021570 74 IAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAF 153 (311)
Q Consensus 74 ~~~~i~~~~g~TPL~~~~~l~~~~g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA~ 153 (311)
+..++.+.+|+|||++++++.+..|++||+|+|++|||||||||++.++|.+|+++|.+.||.++||++|+||||+|+|+
T Consensus 49 ~~~~v~~~ig~TPl~~l~~l~~~~g~~I~~KlE~~nPtGS~KdR~A~~~l~~a~~~G~i~pG~~~vV~aSsGN~G~alA~ 128 (368)
T PLN02556 49 IKTDASQLIGKTPLVYLNKVTEGCGAYIAAKQEMFQPTSSIKDRPALAMIEDAEKKNLITPGKTTLIEPTSGNMGISLAF 128 (368)
T ss_pred hhhhHHHhcCCCccEEccccccccCCEEEEEecccCCccchHHHHHHHHHHHHHHcCCcCCCCCEEEEeCCchHHHHHHH
Confidence 34678899999999999999888889999999999999999999999999999999999999889999999999999999
Q ss_pred HHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCCCCCCcchHhhHHHHHHH
Q 021570 154 IAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYETTGPE 233 (311)
Q Consensus 154 ~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~t~a~E 233 (311)
+|+.+|++|+||||++++..|+.+++.|||+|+.++...++.+.++++.++++++++++|++||+||.+++.||+|+|+|
T Consensus 129 ~a~~~G~~~~ivvp~~~~~~k~~~lr~~GA~Vi~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~np~~~~~g~~ttg~E 208 (368)
T PLN02556 129 MAAMKGYKMILTMPSYTSLERRVTMRAFGAELVLTDPTKGMGGTVKKAYELLESTPDAFMLQQFSNPANTQVHFETTGPE 208 (368)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCccHHHHHHHHHHHhcCCCCccCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999865445678889988888877899999999999996799999999
Q ss_pred HHHHcCCCCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCCchhhhcCCCCCccccccccCCc
Q 021570 234 IWEDTRGKVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFISKPYLACVPYPPPSLCLTCQSES 301 (311)
Q Consensus 234 i~~Ql~~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s~~~~~~~~~~~~tiadgl~~~~ 301 (311)
|++|+.+.||+||+|+|+||+++|++++||+.+|++|||+|||++++.+..+.+ ..+.+ +|+.++.
T Consensus 209 I~eq~~~~~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVigVep~~~~~~~~g~~-~~~~i-~g~g~~~ 274 (368)
T PLN02556 209 IWEDTLGQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVEPAESNVLNGGKP-GPHHI-TGNGVGF 274 (368)
T ss_pred HHHhcCCCCCEEEEcCCcchHHHHHHHHHHHhCCCCEEEEEeeCCCccccCCCC-CCeee-eeccCCC
Confidence 999986689999999999999999999999999999999999999977654433 22333 4554443
No 18
>PLN02970 serine racemase
Probab=100.00 E-value=3.6e-50 Score=380.80 Aligned_cols=223 Identities=16% Similarity=0.160 Sum_probs=203.2
Q ss_pred ccccchhhhcccccCCCceeecccccccCCCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHH
Q 021570 69 IEGLNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTG 148 (311)
Q Consensus 69 ~~~~~~~~~i~~~~g~TPL~~~~~l~~~~g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g 148 (311)
.+...+...+...+++|||++++++++.+|.+||+|+|++|||||||||++.+++.++.+++. .++||++|+||||
T Consensus 12 ~~i~~a~~~i~~~i~~TPL~~~~~l~~~~g~~i~~K~E~~nptGSfKdRga~~~i~~~~~~~~----~~~vv~aSsGN~g 87 (328)
T PLN02970 12 SSIREARKRIAPFIHRTPVLTSSSLDALAGRSLFFKCECFQKGGAFKFRGACNAIFSLSDDQA----EKGVVTHSSGNHA 87 (328)
T ss_pred HHHHHHHHHHhCcCCCCCeeechhhHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHHhhHhhc----CCeEEEECCcHHH
Confidence 345566778889999999999999998888999999999999999999999999999886554 2579999999999
Q ss_pred HHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCCCCCCcchHhhHH
Q 021570 149 IGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYE 228 (311)
Q Consensus 149 ~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~ 228 (311)
+|+|++|+.+|++|+||||+++++.|+.+|+.|||+|+.++.+ ++++.+.+.+++++ ++++|++||+|+.+++ ||+
T Consensus 88 ~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~Vi~~~~~--~~~~~~~a~~la~~-~g~~~~~~~~n~~~~~-g~~ 163 (328)
T PLN02970 88 AALALAAKLRGIPAYIVVPKNAPACKVDAVIRYGGIITWCEPT--VESREAVAARVQQE-TGAVLIHPYNDGRVIS-GQG 163 (328)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhcCCEEEEeCCC--HHHHHHHHHHHHHh-cCCEEeCCCCCcchhh-ehH
Confidence 9999999999999999999999999999999999999999976 78888889998876 4899999999999995 999
Q ss_pred HHHHHHHHHcCCCCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCCchhhhcC-------CCCCccccccccCC
Q 021570 229 TTGPEIWEDTRGKVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFISKPYLACV-------PYPPPSLCLTCQSE 300 (311)
Q Consensus 229 t~a~Ei~~Ql~~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s~~~~~~~-------~~~~~tiadgl~~~ 300 (311)
|+|+||++|++ .||+||+|+|+||+++|++++||+.+|++|||+|||++++++..++ .+..+|+++|++++
T Consensus 164 t~g~Ei~~ql~-~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~Vep~~~~~~~~s~~~g~~~~~~~~~tia~gl~~~ 241 (328)
T PLN02970 164 TIALEFLEQVP-ELDVIIVPISGGGLISGIALAAKAIKPSIKIIAAEPKGADDAAQSKAAGEIITLPVTNTIADGLRAS 241 (328)
T ss_pred HHHHHHHHhcc-CCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEEEECCCcHHHHHHHcCCceeCCCCCCccccccCC
Confidence 99999999997 6999999999999999999999999999999999999999987652 14568999999876
No 19
>PRK11761 cysM cysteine synthase B; Provisional
Probab=100.00 E-value=9.8e-50 Score=372.86 Aligned_cols=206 Identities=46% Similarity=0.727 Sum_probs=191.8
Q ss_pred hhhcccccCCCceeecccccccCCCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHHHHHH
Q 021570 75 AEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFI 154 (311)
Q Consensus 75 ~~~i~~~~g~TPL~~~~~l~~~~g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA~~ 154 (311)
+.++...+|+|||+++++|....|.+||+|+|++|||||||||++.+++.+|+++|.+.+| ++|+++|+||||+|+|++
T Consensus 3 ~~~i~~~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~ 81 (296)
T PRK11761 3 YPTLEDTIGNTPLVKLQRLPPDRGNTILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPG-DTLIEATSGNTGIALAMI 81 (296)
T ss_pred cccHHHhcCCCceEeccccccCCCCEEEEEEcccCCCCCchhHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHHHH
Confidence 3457778999999999999888888999999999999999999999999999999988877 679999999999999999
Q ss_pred HHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCCCCCCcchHhhHHHHHHHH
Q 021570 155 AASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEI 234 (311)
Q Consensus 155 aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~t~a~Ei 234 (311)
|+.+|++|+||||+++++.|+++++.|||+|+.++....++++.+.+.+++++. +++|++||+|+.++.+||+|+|+||
T Consensus 82 a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~n~~~~~~~~~t~~~Ei 160 (296)
T PRK11761 82 AAIKGYRMKLIMPENMSQERRAAMRAYGAELILVPKEQGMEGARDLALQMQAEG-EGKVLDQFANPDNPLAHYETTGPEI 160 (296)
T ss_pred HHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhcc-CCEecCCCCChhhHHHHhhchHHHH
Confidence 999999999999999999999999999999999997445888888899988765 7899999999999877899999999
Q ss_pred HHHcCCCCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCCchh
Q 021570 235 WEDTRGKVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFISKPY 282 (311)
Q Consensus 235 ~~Ql~~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s~~~ 282 (311)
++|+++.+|+||+|+|+||+++|++++||+.+|++|||+|||++++++
T Consensus 161 ~eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVep~~~~~i 208 (296)
T PRK11761 161 WRQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPEEGSSI 208 (296)
T ss_pred HHhcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEecCCCCcC
Confidence 999976799999999999999999999999999999999999998766
No 20
>PRK06382 threonine dehydratase; Provisional
Probab=100.00 E-value=5.5e-50 Score=389.55 Aligned_cols=226 Identities=24% Similarity=0.285 Sum_probs=206.2
Q ss_pred cccchhhhcccccCCCceeecccccccCCCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHH
Q 021570 70 EGLNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGI 149 (311)
Q Consensus 70 ~~~~~~~~i~~~~g~TPL~~~~~l~~~~g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~ 149 (311)
+...+..++...+++|||+++++|++..|.+||+|+|++|||||||||++.+++..+.+.+. .+.||++|+||||+
T Consensus 11 ~i~~a~~~~~~~i~~TPl~~~~~ls~~~g~~v~~K~E~~nptGSfK~Rga~~~i~~~~~~~~----~~gvv~aSsGN~g~ 86 (406)
T PRK06382 11 DILYAKSYLEGYLNRTPLIHSTTFGDEYGGDIYFKLENFQKTGSFKSRGAVFKFSKLSEDEL----RNGVITASAGNHAQ 86 (406)
T ss_pred HHHHHHHHHhCcCCCCCeeEhhhhHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHhcchhcc----CCeEEEECCCHHHH
Confidence 44567788999999999999999999889999999999999999999999999998877653 24599999999999
Q ss_pred HHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCCCCCCcchHhhHHH
Q 021570 150 GLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYET 229 (311)
Q Consensus 150 AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~t 229 (311)
|+|++|+.+|++|+||||++++..|++.++.|||+|+.++++ ++++.+.+.+++++. +++|++||+|+++++ ||+|
T Consensus 87 a~A~aa~~~G~~~~ivmp~~~~~~k~~~~~~~GA~Vv~~~~~--~~~a~~~a~~la~~~-~~~~v~~~~~~~~i~-g~~t 162 (406)
T PRK06382 87 GVAYAASINGIDAKIVMPEYTIPQKVNAVEAYGAHVILTGRD--YDEAHRYADKIAMDE-NRTFIEAFNDRWVIS-GQGT 162 (406)
T ss_pred HHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhc-CCEecCccCChHHHH-HHHH
Confidence 999999999999999999999999999999999999999876 899999999998875 789999999999995 9999
Q ss_pred HHHHHHHHcCCCCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCCchhhhcC----C---CCCccccccccCCcc
Q 021570 230 TGPEIWEDTRGKVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFISKPYLACV----P---YPPPSLCLTCQSESV 302 (311)
Q Consensus 230 ~a~Ei~~Ql~~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s~~~~~~~----~---~~~~tiadgl~~~~~ 302 (311)
+|+||++|++ .||+||+|+|+||+++|++++||+..|++|||||||++++++.+++ . ...+|+|||++++.+
T Consensus 163 ~~~Ei~eq~~-~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vigVe~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~ 241 (406)
T PRK06382 163 IGLEIMEDLP-DLDQIIVPVGGGGLISGIALAAKHINPNVKIIGIESELSDSMKASLREGKIVAHTSGVSICDGISVKYP 241 (406)
T ss_pred HHHHHHHhcC-CCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcCCceecCCCCCccccccCCCc
Confidence 9999999997 7999999999999999999999999999999999999999986552 1 356899999999876
Q ss_pred cc
Q 021570 303 LK 304 (311)
Q Consensus 303 ~~ 304 (311)
..
T Consensus 242 ~~ 243 (406)
T PRK06382 242 GD 243 (406)
T ss_pred cH
Confidence 43
No 21
>PRK08198 threonine dehydratase; Provisional
Probab=100.00 E-value=8e-50 Score=388.33 Aligned_cols=226 Identities=26% Similarity=0.320 Sum_probs=206.9
Q ss_pred ccccchhhhcccccCCCceeecccccccCCCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHH
Q 021570 69 IEGLNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTG 148 (311)
Q Consensus 69 ~~~~~~~~~i~~~~g~TPL~~~~~l~~~~g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g 148 (311)
.+...+..++...+++|||+++++|++.+|.+||+|+|++|||||||||++.+++.++.+++. .++||++|+||||
T Consensus 7 ~~i~~a~~~i~~~i~~TPl~~~~~ls~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g 82 (404)
T PRK08198 7 DDIEEARERLKGVVRRTPLEYSRTLSELTGAEVYLKCENLQRTGSFKIRGAYNKIASLSEEER----ARGVVAASAGNHA 82 (404)
T ss_pred HHHHHHHHHHhccCCCCCceehhhHHHHhCCEEEEEECCCCCCCCCHHHHHHHHHHhccHhhc----CCEEEEECCCHHH
Confidence 455667788999999999999999998889999999999999999999999999999885553 3679999999999
Q ss_pred HHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCCCCCCcchHhhHH
Q 021570 149 IGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYE 228 (311)
Q Consensus 149 ~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~ 228 (311)
+++|++|+.+|++|+||||++++..|+++++.|||+|+.++.+ ++++++.+++++++. +++|++||+|+.+++ ||+
T Consensus 83 ~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vi~~~~~--~~~~~~~a~~~~~~~-g~~~~~~~~~~~~~~-g~~ 158 (404)
T PRK08198 83 QGVAYAASLLGIKATIVMPETAPLSKVKATRSYGAEVVLHGDV--YDEALAKAQELAEET-GATFVHPFDDPDVIA-GQG 158 (404)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECCC--HHHHHHHHHHHHHhc-CCEecCCCCCccHHH-HHH
Confidence 9999999999999999999999999999999999999999865 899999999998875 889999999999994 999
Q ss_pred HHHHHHHHHcCCCCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCCchhhhcC----C---CCCccccccccCCc
Q 021570 229 TTGPEIWEDTRGKVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFISKPYLACV----P---YPPPSLCLTCQSES 301 (311)
Q Consensus 229 t~a~Ei~~Ql~~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s~~~~~~~----~---~~~~tiadgl~~~~ 301 (311)
|+|+||++|++ ++|+||+|+|+||+++|++.+||+.+|++|||||||++++++..++ + ...+|++||++++.
T Consensus 159 t~a~EI~~q~~-~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~g~~v~~ 237 (404)
T PRK08198 159 TIGLEILEDLP-DVDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQAEGAPAMPESLAAGRPVELESVDTIADGIAVKR 237 (404)
T ss_pred HHHHHHHHhCC-CCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEEEEeCCChHHHHHHHcCCCEecCCCCccccccccCC
Confidence 99999999996 6999999999999999999999999999999999999999997642 1 45789999999876
Q ss_pred cc
Q 021570 302 VL 303 (311)
Q Consensus 302 ~~ 303 (311)
+.
T Consensus 238 ~~ 239 (404)
T PRK08198 238 PG 239 (404)
T ss_pred cC
Confidence 64
No 22
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=100.00 E-value=4.7e-49 Score=368.46 Aligned_cols=222 Identities=59% Similarity=0.912 Sum_probs=196.0
Q ss_pred ccccCCCceeecccccccCCCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHHHHHHHHHc
Q 021570 79 TQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASK 158 (311)
Q Consensus 79 ~~~~g~TPL~~~~~l~~~~g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~ 158 (311)
...+|+|||+++++ ....|.+||+|+|++|||||||||++.+++.+|+++|.+.+| .+|+++|+||||+|+|++|+++
T Consensus 2 ~~~~g~TPl~~~~~-~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~~ 79 (298)
T TIGR01139 2 SELIGNTPLVRLNR-IEGCNANVFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPG-KTIVEPTSGNTGIALAMVAAAR 79 (298)
T ss_pred ccccCCCceEEccc-cCCCCceEEEEEcccCCCCcchHHHHHHHHHHHHHcCCCCCC-CEEEEeCCChhHHHHHHHHHHc
Confidence 35689999999998 456688999999999999999999999999999999987776 6799999999999999999999
Q ss_pred CCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCC-ceeeCCCCCCcchHhhHHHHHHHHHHH
Q 021570 159 GYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPN-AYMLQQFDNPANPKIHYETTGPEIWED 237 (311)
Q Consensus 159 Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~-~~~~~~~~n~~~~~~G~~t~a~Ei~~Q 237 (311)
|++|+||||+++++.|+++|+.+||+|+.++++..++++++++++++++.++ +++++||+|+.++..||+|+++||++|
T Consensus 80 Gl~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q 159 (298)
T TIGR01139 80 GYKLILTMPETMSIERRKLLKAYGAELVLTPGAEGMKGAIAKAEEIAASTPNSYFMLQQFENPANPEIHRKTTGPEIWRD 159 (298)
T ss_pred CCeEEEEeCCccCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCcEEcccccCCcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999875457888899998887644 558999999998767999999999999
Q ss_pred cCCCCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCCchhhhcCCCCCccccccccCCcccc
Q 021570 238 TRGKVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFISKPYLACVPYPPPSLCLTCQSESVLK 304 (311)
Q Consensus 238 l~~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s~~~~~~~~~~~~tiadgl~~~~~~~ 304 (311)
+++.||+||+|+|+||+++|++++|+++.|++|||+|||++++++..+.. ..+..+|+..+....
T Consensus 160 ~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~--~~~~~~gl~~~~~~~ 224 (298)
T TIGR01139 160 TDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEPAESPVLSGGKP--GPHKIQGIGAGFIPK 224 (298)
T ss_pred hCCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEEecCCCcccCCCCC--CCCCCCCCCCCCCCC
Confidence 97679999999999999999999999999999999999999977765432 234556776554333
No 23
>PRK07476 eutB threonine dehydratase; Provisional
Probab=100.00 E-value=8.2e-50 Score=377.53 Aligned_cols=222 Identities=22% Similarity=0.278 Sum_probs=203.3
Q ss_pred cccchhhhcccccCCCceeecccccccCCCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHH
Q 021570 70 EGLNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGI 149 (311)
Q Consensus 70 ~~~~~~~~i~~~~g~TPL~~~~~l~~~~g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~ 149 (311)
+...++.+|...+++|||++++++++..|.+||+|+|++|||||||||++.++|.++.++|. .++||++|+||||+
T Consensus 5 ~i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~a~~~~~----~~gvv~aSsGN~g~ 80 (322)
T PRK07476 5 DIYRARRRIAGRVRRTPLVASASLSARAGVPVWLKLETLQPTGSFKLRGATNALLSLSAQER----ARGVVTASTGNHGR 80 (322)
T ss_pred HHHHHHHHHhCCCCCCCceechhhHHhhCCeEEEEEccCCCCCCchHHHHHHHHHhhhhhhh----CCeEEEECCChHHH
Confidence 44567788999999999999999998889999999999999999999999999999999886 24599999999999
Q ss_pred HHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCCCCCCcchHhhHHH
Q 021570 150 GLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYET 229 (311)
Q Consensus 150 AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~t 229 (311)
|+|++|+.+|++|+||||+++++.|+.+++.|||+|+.++.+ ++++++.+.+++++. +++|++|++||++++ ||+|
T Consensus 81 alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~V~~~~~~--~~~~~~~a~~~~~~~-g~~~~~~~~n~~~~~-g~~t 156 (322)
T PRK07476 81 ALAYAARALGIRATICMSRLVPANKVDAIRALGAEVRIVGRS--QDDAQAEVERLVREE-GLTMVPPFDDPRIIA-GQGT 156 (322)
T ss_pred HHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhc-CCEEeCCCCCcceee-chhH
Confidence 999999999999999999999999999999999999999976 789999999988775 779999999999995 9999
Q ss_pred HHHHHHHHcCCCCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCCchhhhcC----C---CCCccccccccCC
Q 021570 230 TGPEIWEDTRGKVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFISKPYLACV----P---YPPPSLCLTCQSE 300 (311)
Q Consensus 230 ~a~Ei~~Ql~~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s~~~~~~~----~---~~~~tiadgl~~~ 300 (311)
+++||++|++ ++|+||+|+|+||+++|++++||+..|++|||+|||++++++..++ + ...+|++||+..+
T Consensus 157 ~~~Ei~~Q~~-~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigVe~~~~~~~~~s~~~g~~~~~~~~~t~a~~l~~~ 233 (322)
T PRK07476 157 IGLEILEALP-DVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVSMERGAAMHASLAAGRPVQVEEVPTLADSLGGG 233 (322)
T ss_pred HHHHHHHhCc-CCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEEEECCchHHHHHHHcCCceeCCCCCCcccccccc
Confidence 9999999997 6999999999999999999999999999999999999999887653 1 3578999988644
No 24
>PRK10717 cysteine synthase A; Provisional
Probab=100.00 E-value=3.4e-49 Score=374.46 Aligned_cols=229 Identities=45% Similarity=0.697 Sum_probs=198.9
Q ss_pred hhhcccccCCCceeecccccccCCCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHHHHHH
Q 021570 75 AEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFI 154 (311)
Q Consensus 75 ~~~i~~~~g~TPL~~~~~l~~~~g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA~~ 154 (311)
.+.+...+|+|||++++++++.+|.+||+|+|++|||||||||++.+++.++++.|.+.+| .+|+++|+||||+|+|++
T Consensus 4 ~~~~~~~~g~TPL~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~v~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~ 82 (330)
T PRK10717 4 FEDVSDTIGNTPLIRLNRASEATGCEILGKAEFLNPGGSVKDRAALNIIWDAEKRGLLKPG-GTIVEGTAGNTGIGLALV 82 (330)
T ss_pred hhhHHHHhCCCceEEccccCCCCCCeEEEEeeccCCCCCchHHHHHHHHHHHHHcCCCCCC-CEEEEeCCcHHHHHHHHH
Confidence 3457778999999999999998899999999999999999999999999999999988877 679999999999999999
Q ss_pred HHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCC------ChHHHHHHHHHHHHhC-CCceeeCCCCCCcchHhhH
Q 021570 155 AASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAK------GMKGAVQKAEEILNST-PNAYMLQQFDNPANPKIHY 227 (311)
Q Consensus 155 aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~------~~~~a~~~a~~~~~~~-~~~~~~~~~~n~~~~~~G~ 227 (311)
|+++|++|+||||+.+++.|+++++.|||+|+.++++. ..+.+.+.+.++.++. .+++|++||+||.++++||
T Consensus 83 a~~~G~~~~vv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~ 162 (330)
T PRK10717 83 AAARGYKTVIVMPETQSQEKKDLLRALGAELVLVPAAPYANPNNYVKGAGRLAEELVASEPNGAIWANQFDNPANREAHY 162 (330)
T ss_pred HHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCcccccccchHHHHHHHHHHHHhhCCCCeEecCCCCChhhHHHHH
Confidence 99999999999999999999999999999999999741 1222344444544443 2789999999999876799
Q ss_pred HHHHHHHHHHcCCCCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCCchhhhcCC-----CCCccccccccCCcc
Q 021570 228 ETTGPEIWEDTRGKVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFISKPYLACVP-----YPPPSLCLTCQSESV 302 (311)
Q Consensus 228 ~t~a~Ei~~Ql~~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s~~~~~~~~-----~~~~tiadgl~~~~~ 302 (311)
+|+++||++|+++.||+||+|+|+||+++|++++||+..|+++||+|||+++ ++..+.. ...+++++||+++.+
T Consensus 163 ~t~a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~Vep~~~-~~~~~~~~g~~~~~~~~~~~gl~~~~~ 241 (330)
T PRK10717 163 ETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLADPTGS-ALYSYYKTGELKAEGSSITEGIGQGRI 241 (330)
T ss_pred HhHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEcCCCC-ccccccccCCcCCCCCcccCcCCCCcC
Confidence 9999999999986799999999999999999999999999999999999998 4554321 356799999998875
Q ss_pred ccc
Q 021570 303 LKL 305 (311)
Q Consensus 303 ~~~ 305 (311)
...
T Consensus 242 ~~~ 244 (330)
T PRK10717 242 TAN 244 (330)
T ss_pred Ccc
Confidence 443
No 25
>PRK08638 threonine dehydratase; Validated
Probab=100.00 E-value=8e-50 Score=378.93 Aligned_cols=227 Identities=26% Similarity=0.297 Sum_probs=204.9
Q ss_pred CccccchhhhcccccCCCceeecccccccCCCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChH
Q 021570 68 GIEGLNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNT 147 (311)
Q Consensus 68 ~~~~~~~~~~i~~~~g~TPL~~~~~l~~~~g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~ 147 (311)
+.+...++.++...+++|||+++++|++..|.+||+|+|++|||||||||++.+++.++.+... ..+|+++|+|||
T Consensus 11 ~~~i~~a~~~i~~~i~~TPlv~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~~~~~~~----~~~vv~~SsGN~ 86 (333)
T PRK08638 11 IDDIIEAKQRLAGRIRKTPLPRSNYLSERCKGEIFLKLENMQRTGSFKIRGAFNKLSSLTDAEK----RKGVVACSAGNH 86 (333)
T ss_pred HHHHHHHHHHhhCcCcCCCceechhhHHhhCCeEEEEeccCCccCCcHHHHHHHHHHhccHHhc----CCeEEEeCCcHH
Confidence 3456677888999999999999999998888999999999999999999999999998775332 256999999999
Q ss_pred HHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCCCCCCcchHhhH
Q 021570 148 GIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHY 227 (311)
Q Consensus 148 g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~ 227 (311)
|+|+|++|+.+|++|+||||+++++.|+.+++.|||+|+.++++ ++++++.+++++++. +++|++||+||++++ ||
T Consensus 87 g~alA~~aa~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~--~~~~~~~a~~~a~~~-g~~~~~~~~~~~~~~-g~ 162 (333)
T PRK08638 87 AQGVALSCALLGIDGKVVMPKGAPKSKVAATCGYGAEVVLHGDN--FNDTIAKVEEIVEEE-GRTFIPPYDDPKVIA-GQ 162 (333)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCEEEEECcC--HHHHHHHHHHHHHhc-CCEEcCcCCCcchhc-cc
Confidence 99999999999999999999999999999999999999999866 899999999998876 789999999999995 99
Q ss_pred HHHHHHHHHHcCCCCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCCchhhhcC----C---CCCccccccccCC
Q 021570 228 ETTGPEIWEDTRGKVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFISKPYLACV----P---YPPPSLCLTCQSE 300 (311)
Q Consensus 228 ~t~a~Ei~~Ql~~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s~~~~~~~----~---~~~~tiadgl~~~ 300 (311)
+|+|+||++|++ +||+||+|+|+||+++|++++||+.+|++|||+|||+++++|.+++ + ...+|+++|++++
T Consensus 163 ~t~a~Ei~~q~~-~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigVep~g~~~~~~s~~~g~~~~~~~~~ti~~gl~~~ 241 (333)
T PRK08638 163 GTIGLEILEDLW-DVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGVQSENVHGMAASFYAGEITTHRTTGTLADGCDVS 241 (333)
T ss_pred cHHHHHHHhhcC-CCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHCCCcccCCCCCCeeccccCC
Confidence 999999999995 6999999999999999999999999999999999999999887653 1 3456899999887
Q ss_pred ccc
Q 021570 301 SVL 303 (311)
Q Consensus 301 ~~~ 303 (311)
.+.
T Consensus 242 ~p~ 244 (333)
T PRK08638 242 RPG 244 (333)
T ss_pred Ccc
Confidence 664
No 26
>PRK06721 threonine synthase; Reviewed
Probab=100.00 E-value=2e-49 Score=379.04 Aligned_cols=233 Identities=21% Similarity=0.217 Sum_probs=205.5
Q ss_pred CCcccccccCCCCCCCccccchhhhcccccCCCceeecccccccCCCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCC
Q 021570 53 CNSVVCKAVSVKPQTGIEGLNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLI 132 (311)
Q Consensus 53 ~~~wRy~~llP~~~~~~~~~~~~~~i~~~~g~TPL~~~~~l~~~~g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~ 132 (311)
..+|||+++||.++ ...++++.+|+|||++++++++.+|.+||+|+|++|||||||||++.+++.+|.++|.
T Consensus 4 ~~~~ry~~~lp~~~-------~~~~~~l~~G~TPl~~l~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~a~~~g~- 75 (352)
T PRK06721 4 GLLNQYASYLPVNE-------NTPDVSLMEGNTPLIPLLNISKQLGIQLYGKYEGANPTGSFKDRGMVMAVAKAKEEGS- 75 (352)
T ss_pred chHHHHHHhCCCCC-------CCCccccCcCCCCeeEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCCC-
Confidence 36899999999842 2345788999999999999998888999999999999999999999999999999995
Q ss_pred CCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCC-CHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCc
Q 021570 133 TPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASM-SLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNA 211 (311)
Q Consensus 133 ~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~-~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~ 211 (311)
++||++|+||||+|+|++|+.+|++|+||||++. ++.|+++++.|||+|+.++++ ++++.+.+.+++++. ++
T Consensus 76 ----~~vV~aSsGN~G~alA~~aa~~G~~~~vvvp~~~~~~~k~~~~~~~GA~V~~~~~~--~~~~~~~a~~~~~~~-~~ 148 (352)
T PRK06721 76 ----EAIICASTGNTSASAAAYAARLGMKCIIVIPEGKIAHGKLAQAVAYGAEIISIEGN--FDDALKAVRNIAAEE-PI 148 (352)
T ss_pred ----CEEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhC-Cc
Confidence 6799999999999999999999999999999974 889999999999999999976 889999999988875 56
Q ss_pred eeeCCCCCCcchHhhHHHHHHHHHHHcCCCCCEEEEccChhhHHHHHHHHH----HhcC-CCCEEEEEeCCCCchhhhcC
Q 021570 212 YMLQQFDNPANPKIHYETTGPEIWEDTRGKVDIFIGGIGTGGTISGAGRYL----KEKN-PNIKVIIFVLFISKPYLACV 286 (311)
Q Consensus 212 ~~~~~~~n~~~~~~G~~t~a~Ei~~Ql~~~pD~vv~pvG~Gg~~~Gi~~~l----k~~~-p~~~iigVe~~~s~~~~~~~ 286 (311)
++++ +.||++++ ||+|+++||++|+++.||+||+|+|+||+++|+++++ |+.+ |+++||+|||++++++..+.
T Consensus 149 ~~~~-~~n~~~~~-G~~t~~~Ei~eq~~~~~D~ivv~vG~GG~l~G~~~G~~~~lk~~~~~~~~vigVep~~~~~~~~g~ 226 (352)
T PRK06721 149 TLVN-SVNPYRIE-GQKTAAFEICDQLQRAPDVLAIPVGNAGNITAYWKGFCEYEKEKGYKKPRIHGFEAEGAAAIVKGH 226 (352)
T ss_pred eecc-CCCchhhh-hhhhHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCeEEEEecCCCChHhhCC
Confidence 6665 56899995 9999999999999767999999999999999865554 5554 89999999999999988775
Q ss_pred C-CCCccccccccCCcc
Q 021570 287 P-YPPPSLCLTCQSESV 302 (311)
Q Consensus 287 ~-~~~~tiadgl~~~~~ 302 (311)
. ..++|+++|+.++.+
T Consensus 227 ~~~~~~tia~~l~~~~~ 243 (352)
T PRK06721 227 VIDEPETIATAIRIGNP 243 (352)
T ss_pred cCCCCCceeeccccCCC
Confidence 4 457899999988764
No 27
>PRK12483 threonine dehydratase; Reviewed
Probab=100.00 E-value=1.2e-49 Score=395.26 Aligned_cols=220 Identities=23% Similarity=0.267 Sum_probs=201.5
Q ss_pred hhcccccCCCceeecccccccCCCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHHHHHHH
Q 021570 76 EDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIA 155 (311)
Q Consensus 76 ~~i~~~~g~TPL~~~~~l~~~~g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA~~a 155 (311)
.++...+++|||+++++|++.+|.+||+|+|++|||||||+|||.+++..+.++.. .+.||++|+||||+++|++|
T Consensus 29 ~~i~~~v~~TPL~~~~~Ls~~~g~~IylK~E~lqptGSfK~RGA~n~i~~l~~~~~----~~GVV~aSaGNha~gvA~aA 104 (521)
T PRK12483 29 ARVYDVARETPLQRAPNLSARLGNQVLLKREDLQPVFSFKIRGAYNKMARLPAEQL----ARGVITASAGNHAQGVALAA 104 (521)
T ss_pred HHHhhhcCCCCeeEchhhhHhhCCEEEEEEcCCCCCCchHHHHHHHHHHHhHHHHh----cCcEEEECCCHHHHHHHHHH
Confidence 46778899999999999999999999999999999999999999999998764332 24599999999999999999
Q ss_pred HHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCCCCCCcchHhhHHHHHHHHH
Q 021570 156 ASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEIW 235 (311)
Q Consensus 156 a~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~t~a~Ei~ 235 (311)
+.+|++|+||||++++..|+..++.|||+|+.++++ ++++.+.|.+++++. +++|++||+|++++. ||+|+|+||+
T Consensus 105 ~~lGi~~~IvmP~~tp~~Kv~~~r~~GAeVil~g~~--~d~a~~~A~~la~e~-g~~~v~pfdd~~via-GqgTig~EI~ 180 (521)
T PRK12483 105 ARLGVKAVIVMPRTTPQLKVDGVRAHGGEVVLHGES--FPDALAHALKLAEEE-GLTFVPPFDDPDVIA-GQGTVAMEIL 180 (521)
T ss_pred HHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHhc-CCeeeCCCCChHHHH-HHHHHHHHHH
Confidence 999999999999999999999999999999999876 899999999999876 789999999999995 9999999999
Q ss_pred HHcCCCCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCCchhhhcCC-------CCCccccccccCCccc
Q 021570 236 EDTRGKVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFISKPYLACVP-------YPPPSLCLTCQSESVL 303 (311)
Q Consensus 236 ~Ql~~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s~~~~~~~~-------~~~~tiadgl~~~~~~ 303 (311)
+|+++.||+||+|+|+||+++|++.++|+++|++|||||||+++++|..++. ....|+|||++++.+.
T Consensus 181 eQ~~~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGVep~~a~~~~~sl~~g~~~~~~~~~t~adGiav~~~g 255 (521)
T PRK12483 181 RQHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEPDDSNCLQAALAAGERVVLGQVGLFADGVAVAQIG 255 (521)
T ss_pred HHhCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEEeCCCchhhHHHhcCCcccCCCCCceeceeccCCCC
Confidence 9998679999999999999999999999999999999999999999986532 4567999999988753
No 28
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=100.00 E-value=6.8e-49 Score=367.62 Aligned_cols=207 Identities=59% Similarity=0.953 Sum_probs=192.7
Q ss_pred ccccCCCceeecccccccCCCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHHHHHHHHHc
Q 021570 79 TQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASK 158 (311)
Q Consensus 79 ~~~~g~TPL~~~~~l~~~~g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~ 158 (311)
...+++|||+++++|++..|.+||+|+|++|||||||||++.+++..++++|.+.+| ++|+++|+||||+|+|++|+++
T Consensus 2 ~~~vg~TPL~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~~ 80 (299)
T TIGR01136 2 EELIGNTPLVRLNRLAPGCDARVLAKLEGRNPSGSVKDRIALSMIEDAEKRGLLKPG-DTIIEATSGNTGIALAMVAAAK 80 (299)
T ss_pred ccccCCCceEEccccCCCCCceEEEEEcccCCCCCccHHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHHHHHHHc
Confidence 346899999999999988889999999999999999999999999999999987777 6799999999999999999999
Q ss_pred CCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCCCCCCcchHhhHHHHHHHHHHHc
Q 021570 159 GYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEIWEDT 238 (311)
Q Consensus 159 Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~t~a~Ei~~Ql 238 (311)
|++|+||||+++++.|+++++.+||+|+.++++.+++++++++++++++.++++++++|+|+.++..||+|+++||++|+
T Consensus 81 G~~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql 160 (299)
T TIGR01136 81 GYKLILTMPETMSLERRKLLRAYGAELILTPAEEGMKGAIDKAEELAAETNKYVMLDQFENPANPEAHYKTTGPEIWRDT 160 (299)
T ss_pred CCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhhCCCeEecCCCCCchhHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999998755789999999988876567899999999986579999999999999
Q ss_pred CCCCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCCchhhhcC
Q 021570 239 RGKVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFISKPYLACV 286 (311)
Q Consensus 239 ~~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s~~~~~~~ 286 (311)
+++||+||+|+|+||+++|++++|++..|++|||+|||++++++..+.
T Consensus 161 ~~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~Ve~~~~~~~~~~~ 208 (299)
T TIGR01136 161 DGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEPAESPVLSGGE 208 (299)
T ss_pred CCCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEEecCCCccccCCC
Confidence 867999999999999999999999999999999999999999998763
No 29
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=100.00 E-value=1.2e-49 Score=384.68 Aligned_cols=223 Identities=18% Similarity=0.197 Sum_probs=198.3
Q ss_pred cccCCCceeecccccccCC--------CeEEEeeCCCCC-CCchhhHHHHHHHHH-----HHHcCCCCCCC---------
Q 021570 80 QLIGKTPMVYLNTIVKGCV--------ANIAAKLEIMEP-CCSVKDRIGFSMIAD-----AEQKGLITPGK--------- 136 (311)
Q Consensus 80 ~~~g~TPL~~~~~l~~~~g--------~~l~vK~E~~nP-tGS~KdRga~~~v~~-----A~~~G~~~~g~--------- 136 (311)
+++++|||++++++++.+| .+||+|+|++|| |||||||++.++|.. ++++|.+.||.
T Consensus 48 ~~~~~TPLv~~~~ls~~~g~~~~~~~~~~v~~K~E~~nP~tGSfKdRgA~~~i~~l~~~~a~~~G~l~pg~~~~~~~~~~ 127 (404)
T cd06447 48 HGIIESPLLPIPRMKQALEKLYHQPIKGRLLLKADSHLPISGSIKARGGIYEVLKHAEKLALEHGLLTLEDDYSKLASEK 127 (404)
T ss_pred CCccCCCceehHHHHHHhccccccCcCceEEEEecCCCCCCCChHHHHHHHHHHHHhHHHHHHhCCCCcccchhhhhhhh
Confidence 3499999999999987665 799999999999 999999999999964 78899988874
Q ss_pred -------ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCC
Q 021570 137 -------SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTP 209 (311)
Q Consensus 137 -------~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~ 209 (311)
.+||++|+||||+|+|++|+.+|++|+||||+++++.|+++|+.|||+|+.++++ ++++++.+.+++++.+
T Consensus 128 ~~~~~~~~~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~~~K~~~ira~GAeVv~v~~~--~~~a~~~a~~la~~~~ 205 (404)
T cd06447 128 FRKLFSQYSIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAKQWKKDKLRSKGVTVVEYETD--YSKAVEEGRKQAAADP 205 (404)
T ss_pred hhhcccCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHHCC
Confidence 4899999999999999999999999999999999999999999999999999876 8999999999998876
Q ss_pred CceeeCCCCCCcchHhhHHHHHHHHHHHcCC---C-----CCEEEEccChhhHHHHHHHHHHhc-CCCCEEEEEeCCCCc
Q 021570 210 NAYMLQQFDNPANPKIHYETTGPEIWEDTRG---K-----VDIFIGGIGTGGTISGAGRYLKEK-NPNIKVIIFVLFISK 280 (311)
Q Consensus 210 ~~~~~~~~~n~~~~~~G~~t~a~Ei~~Ql~~---~-----pD~vv~pvG~Gg~~~Gi~~~lk~~-~p~~~iigVe~~~s~ 280 (311)
+.+|++++++++.+ +||+|+|+||++|+++ . ||+||+|+|+||+++|++++||+. .|+++||+|||++++
T Consensus 206 ~~~~v~~~n~~~~i-aG~~T~g~EI~eQl~~~~~~vD~~~Pd~VvvpvG~GGli~GIa~~lK~~~~p~~kVigVeP~~ap 284 (404)
T cd06447 206 MCYFVDDENSRDLF-LGYAVAASRLKAQLAELGIKVDAEHPLFVYLPCGVGGAPGGVAFGLKLIFGDNVHCFFAEPTHSP 284 (404)
T ss_pred CeEeCCCCCchhHH-hhHHHHHHHHHHHhhhccCccccCCCCEEEEecCccHHHHHHHHHHHHhcCCCCEEEEEccCCCh
Confidence 77899998777777 5999999999999962 2 568999999999999999999997 789999999999998
Q ss_pred hhhhcCC-------C------CCccccccccCCccccc
Q 021570 281 PYLACVP-------Y------PPPSLCLTCQSESVLKL 305 (311)
Q Consensus 281 ~~~~~~~-------~------~~~tiadgl~~~~~~~~ 305 (311)
++..+.. . ..+|+||||+++.+..+
T Consensus 285 ~~~~s~~ag~~~~~~~~~~g~~~~TiadGl~~~~p~~~ 322 (404)
T cd06447 285 CMLLGMATGLHDKISVQDIGIDNRTAADGLAVGRPSGL 322 (404)
T ss_pred HHHHHHHcCCCccccccccCCCccchhhhhcCCCcchh
Confidence 8855411 1 36799999999987654
No 30
>PRK07409 threonine synthase; Validated
Probab=100.00 E-value=1.9e-49 Score=379.42 Aligned_cols=233 Identities=19% Similarity=0.205 Sum_probs=207.1
Q ss_pred CCcccccccCCCCCCCccccchhhhcccccCCCceeecccccccCCCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCC
Q 021570 53 CNSVVCKAVSVKPQTGIEGLNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLI 132 (311)
Q Consensus 53 ~~~wRy~~llP~~~~~~~~~~~~~~i~~~~g~TPL~~~~~l~~~~g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~ 132 (311)
..+|||+++||+. ....++++++|+|||++++++++..|.+||+|+|++|||||||||++.+++.+++++|.
T Consensus 7 ~~~~~~~~~lp~~-------~~~~~~~l~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~- 78 (353)
T PRK07409 7 GLIEAYRDRLPVT-------DDTPVVTLGEGNTPLIPAPNLSELLGVEVYVKYEGLNPTGSFKDRGMTMAVTKAKEEGA- 78 (353)
T ss_pred cchHHHHHhCCCC-------CccCcccCCCCCCCEEEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCCC-
Confidence 4689999999983 12345899999999999999988888899999999999999999999999999999884
Q ss_pred CCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCC-CCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCc
Q 021570 133 TPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPAS-MSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNA 211 (311)
Q Consensus 133 ~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~-~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~ 211 (311)
++||++|+||||+++|++|+.+|++|+||||++ .++.|+++++.|||+|+.++++ ++++.+.+++++++. ++
T Consensus 79 ----~~iv~aSsGN~g~alA~~a~~~G~~~~ivvP~~~~~~~k~~~~~~~GA~Vi~~~~~--~~~~~~~a~~l~~~~-~~ 151 (353)
T PRK07409 79 ----KAVICASTGNTSASAAAYAARAGLKAFVLIPEGKIALGKLAQAVMYGAEIIQIDGN--FDDALEIVRELAEKY-PV 151 (353)
T ss_pred ----CEEEEECCcHHHHHHHHHHHHcCCCEEEEEcCCCCchhhHHHHHhcCCEEEEECCC--HHHHHHHHHHHHHhc-Cc
Confidence 679999999999999999999999999999997 6899999999999999999976 899999999988776 46
Q ss_pred eeeCCCCCCcchHhhHHHHHHHHHHHcCCCCCEEEEccChhhHHHHHHHHHHhcCC------CCEEEEEeCCCCchhhhc
Q 021570 212 YMLQQFDNPANPKIHYETTGPEIWEDTRGKVDIFIGGIGTGGTISGAGRYLKEKNP------NIKVIIFVLFISKPYLAC 285 (311)
Q Consensus 212 ~~~~~~~n~~~~~~G~~t~a~Ei~~Ql~~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p------~~~iigVe~~~s~~~~~~ 285 (311)
+++++ .||.+++ ||+|+++||++|+++.||+||+|+|+||+++|++++|++..+ .+|||+|||++++++..+
T Consensus 152 ~~~~~-~n~~~~~-g~~t~~~EI~~q~~~~~d~iv~~vG~GG~~~Gi~~g~~~~~~~~~~~~~~kvigVep~g~~~~~~g 229 (353)
T PRK07409 152 TLVNS-VNPYRIE-GQKTAAFEIVDALGDAPDYHCIPVGNAGNITAYWKGYKEYHQDGKSTKLPRMMGFQAAGAAPIVRG 229 (353)
T ss_pred eecCC-CCchhhh-hHHHHHHHHHHHhCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCccCCCeEEEEecCCCChHhhC
Confidence 77765 5999995 999999999999976799999999999999999999998643 489999999999998876
Q ss_pred CC-CCCccccccccCCcc
Q 021570 286 VP-YPPPSLCLTCQSESV 302 (311)
Q Consensus 286 ~~-~~~~tiadgl~~~~~ 302 (311)
.+ ....|+++|+.++.+
T Consensus 230 ~~~~~~~ti~~~l~~~~~ 247 (353)
T PRK07409 230 EPVKNPETIATAIRIGNP 247 (353)
T ss_pred CcCCCCcceeeeeecCCC
Confidence 54 346799999987643
No 31
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=100.00 E-value=6.9e-49 Score=366.17 Aligned_cols=203 Identities=45% Similarity=0.741 Sum_probs=189.0
Q ss_pred cccccCCCceeecccccccCCCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHHHHHHHHH
Q 021570 78 VTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAAS 157 (311)
Q Consensus 78 i~~~~g~TPL~~~~~l~~~~g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~ 157 (311)
+...+|+|||++++++....|.+||+|+|++|||||||||++.++|.+|.++|.+.+| ++|+++|+||||+|+|++|+.
T Consensus 2 i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~ 80 (290)
T TIGR01138 2 IEQTVGNTPLVRLQRMGPENGSEVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKPG-DVLIEATSGNTGIALAMIAAL 80 (290)
T ss_pred hHHhCCCCceEEccccccCCCCeEEEEEccCCCCccHHHHHHHHHHHHHHHcCCCCCC-CEEEEECCChHHHHHHHHHHH
Confidence 3456899999999999888889999999999999999999999999999999988877 679999999999999999999
Q ss_pred cCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCCCCCCcchHhhHHHHHHHHHHH
Q 021570 158 KGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEIWED 237 (311)
Q Consensus 158 ~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~t~a~Ei~~Q 237 (311)
+|++|+||||+++++.|+++++.|||+|+.++.+.+++++.+.+.+++++. +.+|++||+|+.++.+||+|+++||++|
T Consensus 81 ~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~~~~~~~~~~~t~~~Ei~~q 159 (290)
T TIGR01138 81 KGYRMKLLMPDNMSQERKAAMRAYGAELILVTKEEGMEGARDLALELANRG-EGKLLDQFNNPDNPYAHYTSTGPEIWQQ 159 (290)
T ss_pred cCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhC-CCCCCCccCCcccHHHHhHhHHHHHHHH
Confidence 999999999999999999999999999999997655788889999998876 4468999999999976899999999999
Q ss_pred cCCCCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCCchh
Q 021570 238 TRGKVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFISKPY 282 (311)
Q Consensus 238 l~~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s~~~ 282 (311)
++++||+||+|+|+||+++|++++||+++|++|||+|||++++++
T Consensus 160 ~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Vep~~~~~~ 204 (290)
T TIGR01138 160 TGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPEEGSSI 204 (290)
T ss_pred cCCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEEeCCCCCCc
Confidence 987799999999999999999999999999999999999998775
No 32
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=100.00 E-value=3.2e-49 Score=373.46 Aligned_cols=230 Identities=21% Similarity=0.201 Sum_probs=207.9
Q ss_pred cccccccCCCCCCCccccchhhhcccccCCCceeecccccccCC-CeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCC
Q 021570 55 SVVCKAVSVKPQTGIEGLNIAEDVTQLIGKTPMVYLNTIVKGCV-ANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLIT 133 (311)
Q Consensus 55 ~wRy~~llP~~~~~~~~~~~~~~i~~~~g~TPL~~~~~l~~~~g-~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~ 133 (311)
+|||+++||.+ ...++.+++|+|||+++++|++..| .+||+|+|++|||||||||++.+++.++.++|.
T Consensus 1 ~~~~~~~~~~~--------~~~~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-- 70 (324)
T cd01563 1 LWRYRELLPVT--------EDDIVSLGEGNTPLVRAPRLGERLGGKNLYVKDEGLNPTGSFKDRGMTVAVSKAKELGV-- 70 (324)
T ss_pred CccchhhCCCC--------CCCcccCCCCCCceeechhhHhhcCCCceEEEecCCCCcccHHHhhHHHHHHHHHHcCC--
Confidence 59999999983 2345899999999999999988776 699999999999999999999999999999883
Q ss_pred CCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCcee
Q 021570 134 PGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYM 213 (311)
Q Consensus 134 ~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~ 213 (311)
++|+++|+||||.|+|++|+.+|++|+||||+++++.|+++++.+||+|+.++.+ ++++.+.+.+++++. .+|
T Consensus 71 ---~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~GA~Vi~~~~~--~~~~~~~a~~~~~~~--~~~ 143 (324)
T cd01563 71 ---KAVACASTGNTSASLAAYAARAGIKCVVFLPAGKALGKLAQALAYGATVLAVEGN--FDDALRLVRELAEEN--WIY 143 (324)
T ss_pred ---CEEEEeCCCHHHHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHcCCEEEEECCc--HHHHHHHHHHHHHhc--Cee
Confidence 6799999999999999999999999999999999999999999999999999975 889999999988875 789
Q ss_pred eCCCCCCcchHhhHHHHHHHHHHHcCC-CCCEEEEccChhhHHHHHHHHHHhcC------CCCEEEEEeCCCCchhhhcC
Q 021570 214 LQQFDNPANPKIHYETTGPEIWEDTRG-KVDIFIGGIGTGGTISGAGRYLKEKN------PNIKVIIFVLFISKPYLACV 286 (311)
Q Consensus 214 ~~~~~n~~~~~~G~~t~a~Ei~~Ql~~-~pD~vv~pvG~Gg~~~Gi~~~lk~~~------p~~~iigVe~~~s~~~~~~~ 286 (311)
++|++|+.+++ ||.|++.||++|+++ .||+||+|+|+||+++|++.+||+.. ++++||+|||++++++..++
T Consensus 144 ~~~~~n~~~~~-g~~t~~~Ei~~q~~~~~~d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~~~~~vigve~~~~~~~~~~~ 222 (324)
T cd01563 144 LSNSLNPYRLE-GQKTIAFEIAEQLGWEVPDYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVGVQAEGAAPIVRAF 222 (324)
T ss_pred ccCCCCcceec-chhhhHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHHHHHhCCccccCCeEEEEecCCCCHHHHHH
Confidence 99999999995 999999999999974 59999999999999999999999874 57999999999998886542
Q ss_pred C---------CCCccccccccCCcc
Q 021570 287 P---------YPPPSLCLTCQSESV 302 (311)
Q Consensus 287 ~---------~~~~tiadgl~~~~~ 302 (311)
. ...+|+++||.++.+
T Consensus 223 ~~g~~~~~~~~~~~t~~~gl~~~~~ 247 (324)
T cd01563 223 KEGKDDIEPVENPETIATAIRIGNP 247 (324)
T ss_pred HcCCCccCcCCCCCceeeeeecCCC
Confidence 1 356899999988754
No 33
>PRK06110 hypothetical protein; Provisional
Probab=100.00 E-value=2.3e-49 Score=374.44 Aligned_cols=225 Identities=20% Similarity=0.226 Sum_probs=203.0
Q ss_pred cccchhhhcccccCCCceeecccccccCCCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHH
Q 021570 70 EGLNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGI 149 (311)
Q Consensus 70 ~~~~~~~~i~~~~g~TPL~~~~~l~~~~g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~ 149 (311)
+...++.++...+++|||++++++++.+|.+||+|+|++|||||||||++.+++.++.++|... ..|+++|+||||+
T Consensus 7 ~i~~a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~l~~a~~~~~~~---~~vv~aSsGN~g~ 83 (322)
T PRK06110 7 ELEAAAAVVYAAMPPTPQYRWPLLAERLGCEVWVKHENHTPTGAFKVRGGLVYFDRLARRGPRV---RGVISATRGNHGQ 83 (322)
T ss_pred HHHHHHHHHhCcCcCCCcccchhHHHHhCCeEEEEeccCCCcCCcHHHHHHHHHHHhhhhcCCC---ceEEEECCCHHHH
Confidence 4456678889999999999999999888999999999999999999999999999999887544 3499999999999
Q ss_pred HHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCCCCCCcchHhhHHH
Q 021570 150 GLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYET 229 (311)
Q Consensus 150 AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~t 229 (311)
|+|++|+++|++|+||||+++++.|+++++.|||+|+.++++ ++++++.+.++++++ ++||+++| |+++++ ||+|
T Consensus 84 alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~--~~~~~~~a~~~~~~~-~~~~~~~~-~~~~~~-G~~t 158 (322)
T PRK06110 84 SVAFAARRHGLAATIVVPHGNSVEKNAAMRALGAELIEHGED--FQAAREEAARLAAER-GLHMVPSF-HPDLVR-GVAT 158 (322)
T ss_pred HHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhc-CCEEcCCC-CChHHh-ccch
Confidence 999999999999999999999999999999999999999765 899999999988875 78999998 678884 9999
Q ss_pred HHHHHHHHcCCCCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCCchhhhcCC-------CCCccccccccCCcc
Q 021570 230 TGPEIWEDTRGKVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFISKPYLACVP-------YPPPSLCLTCQSESV 302 (311)
Q Consensus 230 ~a~Ei~~Ql~~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s~~~~~~~~-------~~~~tiadgl~~~~~ 302 (311)
+++||++|++ .+|+||+|+|+||+++|++++||+.+|++|||+|||++++++..++. ...+|+++|++++.+
T Consensus 159 ~~~Ei~~q~~-~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi~Vep~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~ 237 (322)
T PRK06110 159 YALELFRAVP-DLDVVYVPIGMGSGICGAIAARDALGLKTRIVGVVSAHAPAYALSFEAGRVVTTPVATTLADGMACRTP 237 (322)
T ss_pred HHHHHHhhCC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEeeCCChHHHHHHHcCCcccCCCCCCcccccCCCCc
Confidence 9999999997 69999999999999999999999999999999999999999876421 346799999987664
Q ss_pred c
Q 021570 303 L 303 (311)
Q Consensus 303 ~ 303 (311)
.
T Consensus 238 ~ 238 (322)
T PRK06110 238 D 238 (322)
T ss_pred c
Confidence 3
No 34
>PRK06608 threonine dehydratase; Provisional
Probab=100.00 E-value=4e-49 Score=374.85 Aligned_cols=228 Identities=19% Similarity=0.194 Sum_probs=205.9
Q ss_pred CCccccchhhhcccccCCCceeecccccccCCCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcCh
Q 021570 67 TGIEGLNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGN 146 (311)
Q Consensus 67 ~~~~~~~~~~~i~~~~g~TPL~~~~~l~~~~g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN 146 (311)
++.+...++.++...+++|||+++++|++.+|++||+|+|++|||||||||++.+++.++.++|.+. ++|+++|+||
T Consensus 6 ~~~~i~~A~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~---~~vv~~SsGN 82 (338)
T PRK06608 6 NPQNIAAAHNRIKQYLHLTPIVHSESLNEMLGHEIFFKVESLQKTGAFKVRGVLNHLLELKEQGKLP---DKIVAYSTGN 82 (338)
T ss_pred CHHHHHHHHHHHhCcCcCCCccchHhHHHHhCCEEEEEeCCCCCCCCcHHHHHHHHHHHhhhhcCcC---CeEEEECCCH
Confidence 4566777888899999999999999999989999999999999999999999999999999999653 5699999999
Q ss_pred HHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCCCCCCcchHhh
Q 021570 147 TGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIH 226 (311)
Q Consensus 147 ~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G 226 (311)
||+|+|++|+.+|++|+||||+++++.|+++++.|||+|+.++. .+++.+++.+ ++ .+++||++||+|+++++ |
T Consensus 83 ~g~alA~~a~~~G~~~~vv~p~~~~~~k~~~l~~~GA~V~~~~~---~~~~~~~a~~-~~-~~~~~~~~~~~~~~~~~-g 156 (338)
T PRK06608 83 HGQAVAYASKLFGIKTRIYLPLNTSKVKQQAALYYGGEVILTNT---RQEAEEKAKE-DE-EQGFYYIHPSDSDSTIA-G 156 (338)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC---HHHHHHHHHH-HH-hCCCEEcCCCCCHHHhc-c
Confidence 99999999999999999999999999999999999999999974 4677777777 54 35789999999999994 9
Q ss_pred HHHHHHHHHHHcCCCCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCCchhhhcC----C----CCCcccccccc
Q 021570 227 YETTGPEIWEDTRGKVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFISKPYLACV----P----YPPPSLCLTCQ 298 (311)
Q Consensus 227 ~~t~a~Ei~~Ql~~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s~~~~~~~----~----~~~~tiadgl~ 298 (311)
|+|+++||++|+++.||+||+|+|+||+++|+++++|+..|+++||+|||++++++..++ + ..++|+++|++
T Consensus 157 ~~t~a~Ei~~q~~~~~D~vv~~vG~GGt~~Gi~~~~k~~~~~~~vigVep~~~~~~~~s~~~g~~~~~~~~~~t~~~gl~ 236 (338)
T PRK06608 157 AGTLCYEALQQLGFSPDAIFASCGGGGLISGTYLAKELISPTSLLIGSEPLNANDAYLSLKNNKIYRLNYSPNTIADGLK 236 (338)
T ss_pred HHHHHHHHHHhcCCCcCEEEEeechhHHHHHHHHHHHhcCCCCEEEEEeeCCChHHHHHHHcCCeEeCCCCCCCeecccC
Confidence 999999999999877999999999999999999999999999999999999999886541 1 34579999999
Q ss_pred CCccc
Q 021570 299 SESVL 303 (311)
Q Consensus 299 ~~~~~ 303 (311)
++.+.
T Consensus 237 ~~~~~ 241 (338)
T PRK06608 237 TLSVS 241 (338)
T ss_pred CCCCC
Confidence 97763
No 35
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=100.00 E-value=5.1e-49 Score=371.28 Aligned_cols=221 Identities=21% Similarity=0.276 Sum_probs=200.3
Q ss_pred cccchhhhcccccCCCceeecccccccCCCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHH
Q 021570 70 EGLNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGI 149 (311)
Q Consensus 70 ~~~~~~~~i~~~~g~TPL~~~~~l~~~~g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~ 149 (311)
+...++.++...+++|||++++++++.+|.+||+|+|++|||||||||++.+++..+.+... ..+|+++|+||||+
T Consensus 5 ~i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~ 80 (317)
T TIGR02991 5 DIERAAARISGRVEETPLVESPSLSELCGVPVHLKLEHRQTTGSFKLRGATNAVLSLSDTQR----AAGVVAASTGNHGR 80 (317)
T ss_pred HHHHHHHHHhCcCCCCCceechhhHHhhCCeEEEEeccCCCCCCcHHHHHHHHHHhhhHhcc----CCeEEEECCCHHHH
Confidence 45567788999999999999999998888999999999999999999999999998764321 25699999999999
Q ss_pred HHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCCCCCCcchHhhHHH
Q 021570 150 GLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYET 229 (311)
Q Consensus 150 AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~t 229 (311)
|+|++|+++|++|+||||+++++.|+++++.|||+|+.++.+ ++++.+.+.+++++. +++|++||+||+++ +||+|
T Consensus 81 alA~~a~~~G~~~~v~~p~~~~~~k~~~~~~~GA~V~~~~~~--~~~~~~~a~~~~~~~-g~~~~~~~~n~~~~-~g~~t 156 (317)
T TIGR02991 81 ALAYAAAEEGVRATICMSELVPQNKVDEIRRLGAEVRIVGRS--QDDAQEEVERLVADR-GLTMLPPFDHPDIV-AGQGT 156 (317)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHcCCEEEEeCCC--HHHHHHHHHHHHHhc-CCEeeCCCCChHHH-hhHHH
Confidence 999999999999999999999999999999999999999986 889999999988775 78999999999999 49999
Q ss_pred HHHHHHHHcCCCCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCCchhhhcC----C---CCCccccccccC
Q 021570 230 TGPEIWEDTRGKVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFISKPYLACV----P---YPPPSLCLTCQS 299 (311)
Q Consensus 230 ~a~Ei~~Ql~~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s~~~~~~~----~---~~~~tiadgl~~ 299 (311)
+++||++|++ .+|+||+|+|+||+++|++++||+++|++|||+|||++++++..++ + ...+|++|||++
T Consensus 157 ~a~Ei~~q~~-~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~~l~~ 232 (317)
T TIGR02991 157 LGLEVVEQMP-DLATVLVPLSGGGLASGVAMAVKAARPDTRVIGVSMERGAAMKASLQAGRPVLVAELPTLADSLGG 232 (317)
T ss_pred HHHHHHHhCC-CCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEEEECCchHHHHHHHcCCcccCCCCCChhhhhhh
Confidence 9999999996 5899999999999999999999999999999999999999987642 1 457899998864
No 36
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=100.00 E-value=4.7e-49 Score=383.11 Aligned_cols=225 Identities=22% Similarity=0.272 Sum_probs=201.0
Q ss_pred cchhhhcccccCCCceeecccccccCCCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHHH
Q 021570 72 LNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGL 151 (311)
Q Consensus 72 ~~~~~~i~~~~g~TPL~~~~~l~~~~g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~Al 151 (311)
..+..++...+++|||+++++|++.+|.+||+|+|++|||||||||++.+++..+.+... .+.||++|+||||+++
T Consensus 4 ~~a~~~i~~~i~~TPl~~~~~ls~~~g~~iy~K~E~~~ptGSfK~RgA~~~i~~l~~~~~----~~gvv~aSsGN~g~a~ 79 (409)
T TIGR02079 4 EAARKRLKEVVPHTPLQLNERLSEKYGANIYLKREDLQPVRSYKIRGAYNFLKQLSDAQL----AKGVVCASAGNHAQGF 79 (409)
T ss_pred HHHHHHHhCcCCCCCccccHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhh----CCEEEEECccHHHHHH
Confidence 346678899999999999999999889999999999999999999999999987543322 2469999999999999
Q ss_pred HHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEE---EEECCCCChHHHHHHHHHHHHhCCCceeeCCCCCCcchHhhHH
Q 021570 152 AFIAASKGYKLILTMPASMSLERRVLLKAFGAEL---VLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYE 228 (311)
Q Consensus 152 A~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V---~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~ 228 (311)
|++|+++|++|+||||++++..|+.+++.|||+| +.++.+ ++++++.+.+++++. +++|++||+||.+++ ||+
T Consensus 80 A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~vv~v~~~g~~--~~~a~~~a~~~~~~~-g~~~~~~~~~~~~~~-g~~ 155 (409)
T TIGR02079 80 AYACRHLGVHGTVFMPATTPKQKIDRVKIFGGEFIEIILVGDT--FDQCAAAAREHVEDH-GGTFIPPFDDPRIIE-GQG 155 (409)
T ss_pred HHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCCeeEEEEeCCC--HHHHHHHHHHHHHhc-CCEEeCCCCCHhHhh-hhH
Confidence 9999999999999999999999999999999974 445544 899999999998875 789999999999995 999
Q ss_pred HHHHHHHHHcCCCCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCCchhhhcC----C---CCCccccccccCCc
Q 021570 229 TTGPEIWEDTRGKVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFISKPYLACV----P---YPPPSLCLTCQSES 301 (311)
Q Consensus 229 t~a~Ei~~Ql~~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s~~~~~~~----~---~~~~tiadgl~~~~ 301 (311)
|+|+||++|+++.||+||+|+|+||+++|++.+||+.+|+++||||||+++++|..++ + ...+|+|||+++..
T Consensus 156 ti~~Ei~~q~~~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~g~~v~~ 235 (409)
T TIGR02079 156 TVAAEILDQLPEKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVEPEGAPSMKASLEAGEVVTLDKIDNFVDGAAVKR 235 (409)
T ss_pred HHHHHHHHhcCCCCCEEEEEecHhHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCceecCCCCCeeccccCCC
Confidence 9999999999866999999999999999999999999999999999999999998752 1 35679999999988
Q ss_pred ccc
Q 021570 302 VLK 304 (311)
Q Consensus 302 ~~~ 304 (311)
+..
T Consensus 236 ~g~ 238 (409)
T TIGR02079 236 VGD 238 (409)
T ss_pred CcH
Confidence 754
No 37
>PRK07048 serine/threonine dehydratase; Validated
Probab=100.00 E-value=6.3e-49 Score=371.29 Aligned_cols=225 Identities=17% Similarity=0.199 Sum_probs=203.5
Q ss_pred ccccchhhhcccccCCCceeecccccccCCCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHH
Q 021570 69 IEGLNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTG 148 (311)
Q Consensus 69 ~~~~~~~~~i~~~~g~TPL~~~~~l~~~~g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g 148 (311)
.+...++.++...+++|||++++++++..|.+||+|+|++|||||||||++.+++.++.+++. .++|+++|+||||
T Consensus 9 ~~i~~a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g 84 (321)
T PRK07048 9 DDVAAAAARLAGVAHRTPVLTSRTADARTGAQVFFKCENFQRMGAFKFRGAYNALSQFSPEQR----RAGVVTFSSGNHA 84 (321)
T ss_pred HHHHHHHHHhhCCCCCCCCccchhhHHhcCCeEEEEeccCCCCCCeeHHHHHHHHHhhhHhhc----CCcEEEeCCCHHH
Confidence 455667788999999999999999988888999999999999999999999999999885432 2569999999999
Q ss_pred HHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCCCCCCcchHhhHH
Q 021570 149 IGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYE 228 (311)
Q Consensus 149 ~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~ 228 (311)
+|+|++|+.+|++|+||||+++++.|+.+++.|||+|+.++++ ++++.+.+.+++++. +++|++||+|++++ +||+
T Consensus 85 ~alA~~a~~~G~~~~vvvp~~~~~~k~~~~~~~GAeV~~~~~~--~~~~~~~a~~l~~~~-g~~~~~~~~~~~~~-~g~~ 160 (321)
T PRK07048 85 QAIALSARLLGIPATIVMPQDAPAAKVAATRGYGGEVVTYDRY--TEDREEIGRRLAEER-GLTLIPPYDHPHVI-AGQG 160 (321)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHhc-CCEEECCCCCcchh-hccc
Confidence 9999999999999999999999999999999999999999976 778888888888875 78999999999998 5999
Q ss_pred HHHHHHHHHcCCCCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCCchhhhcC----C---CCCccccccccCCc
Q 021570 229 TTGPEIWEDTRGKVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFISKPYLACV----P---YPPPSLCLTCQSES 301 (311)
Q Consensus 229 t~a~Ei~~Ql~~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s~~~~~~~----~---~~~~tiadgl~~~~ 301 (311)
|+++||++|++ .||+||+|+|+||+++|++++||+..|+++||+|||++++++..++ . ..++|+|||++++.
T Consensus 161 t~~~EI~~q~~-~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~g~~~~~ 239 (321)
T PRK07048 161 TAAKELFEEVG-PLDALFVCLGGGGLLSGCALAARALSPGCKVYGVEPEAGNDGQQSFRSGEIVHIDTPRTIADGAQTQH 239 (321)
T ss_pred hHHHHHHhhcC-CCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEeeCCChhHHHHHHcCCcccCCCCCCcccccccCC
Confidence 99999999996 7999999999999999999999999999999999999999876552 1 36789999998766
Q ss_pred c
Q 021570 302 V 302 (311)
Q Consensus 302 ~ 302 (311)
+
T Consensus 240 ~ 240 (321)
T PRK07048 240 L 240 (321)
T ss_pred c
Confidence 4
No 38
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=100.00 E-value=5e-48 Score=360.32 Aligned_cols=217 Identities=54% Similarity=0.878 Sum_probs=196.2
Q ss_pred CCCceeecccccccCCCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeE
Q 021570 83 GKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKL 162 (311)
Q Consensus 83 g~TPL~~~~~l~~~~g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~ 162 (311)
|+|||++++++.+..|.+||+|+|++|||||||+|++.+++.++.++|.+.+| .+|+++|+||||+|+|++|+++|++|
T Consensus 1 g~TPl~~~~~l~~~~g~~i~~K~E~~~ptgS~K~R~a~~~l~~a~~~g~~~~~-~~vv~~SsGN~g~alA~~a~~~G~~~ 79 (291)
T cd01561 1 GNTPLVRLNRLSPGTGAEIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPG-TTIIEPTSGNTGIGLAMVAAAKGYRF 79 (291)
T ss_pred CCCCEEEccccCCCCCCeEEEEecccCCCCcchHHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHHHHHHHcCCeE
Confidence 68999999999988889999999999999999999999999999999987665 67999999999999999999999999
Q ss_pred EEEECCCCCHHHHHHHHhcCCEEEEECCCC--ChHHHHHHHHHHHHhCCCceeeCCCCCCcchHhhHHHHHHHHHHHcCC
Q 021570 163 ILTMPASMSLERRVLLKAFGAELVLTDSAK--GMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEIWEDTRG 240 (311)
Q Consensus 163 ~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~--~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~t~a~Ei~~Ql~~ 240 (311)
+||||.++++.|+++++.+||+|+.++.+. ..+++++.+++++++.++++|+++|+||.++++|++|+++||++|+++
T Consensus 80 ~i~vp~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~g~~~t~~~Ei~~ql~~ 159 (291)
T cd01561 80 IIVMPETMSEEKRKLLRALGAEVILTPEAEADGMKGAIAKARELAAETPNAFWLNQFENPANPEAHYETTAPEIWEQLDG 159 (291)
T ss_pred EEEECCCCCHHHHHHHHHcCCEEEEeCCCCcCCHHHHHHHHHHHHhhCCCcEEecCCCCchHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999873 237888899998887668999999999999974455999999999986
Q ss_pred CCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCCchhhhcCCCCCccccccccCCcc
Q 021570 241 KVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFISKPYLACVPYPPPSLCLTCQSESV 302 (311)
Q Consensus 241 ~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s~~~~~~~~~~~~tiadgl~~~~~ 302 (311)
.||+||+|+|+||+++|++++|+++.|+++||+|||++++++.. .....++++||.++..
T Consensus 160 ~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~--~~~~~~~~~gi~~~~~ 219 (291)
T cd01561 160 KVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPVGSVLFSG--GPPGPHKIEGIGAGFI 219 (291)
T ss_pred CCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEEecCCCcccCC--CCCCCCcCCCCCCCCC
Confidence 79999999999999999999999999999999999999988821 2345778899988743
No 39
>PLN02550 threonine dehydratase
Probab=100.00 E-value=9.4e-49 Score=391.47 Aligned_cols=219 Identities=20% Similarity=0.265 Sum_probs=200.5
Q ss_pred hcccccCCCceeecccccccCCCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHHHHHHHH
Q 021570 77 DVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAA 156 (311)
Q Consensus 77 ~i~~~~g~TPL~~~~~l~~~~g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa 156 (311)
++...+++|||+++++|++.+|.+||+|+|++|||||||+|++.+.|.++.++. .. ..|+++|+||||+++|++|+
T Consensus 102 ~v~~~i~~TPL~~s~~LS~~~g~~IylK~E~lqptGSFK~RGA~n~I~~L~~e~-~~---~GVV~aSaGNhAqgvA~aA~ 177 (591)
T PLN02550 102 KVYDVAIESPLQLAKKLSERLGVKVLLKREDLQPVFSFKLRGAYNMMAKLPKEQ-LD---KGVICSSAGNHAQGVALSAQ 177 (591)
T ss_pred hhhccccCChhhhhHHhhHhhCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHhc-CC---CCEEEECCCHHHHHHHHHHH
Confidence 566889999999999999999999999999999999999999999999885443 23 44999999999999999999
Q ss_pred HcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCCCCCCcchHhhHHHHHHHHHH
Q 021570 157 SKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEIWE 236 (311)
Q Consensus 157 ~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~t~a~Ei~~ 236 (311)
++|++|+||||++++..|++.++.|||+|+.++.+ ++++.+.|.+++++. +++|+++|+||+++ +||+|+|+||++
T Consensus 178 ~lGika~IvmP~~tp~~Kv~~~r~~GAeVvl~g~~--~dea~~~A~~la~e~-g~~fi~pfddp~vi-aGqgTig~EI~e 253 (591)
T PLN02550 178 RLGCDAVIAMPVTTPEIKWQSVERLGATVVLVGDS--YDEAQAYAKQRALEE-GRTFIPPFDHPDVI-AGQGTVGMEIVR 253 (591)
T ss_pred HcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCC--HHHHHHHHHHHHHhc-CCEEECCCCChHHH-HHHHHHHHHHHH
Confidence 99999999999999999999999999999999876 899999999998875 77999999999999 599999999999
Q ss_pred HcCCCCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCCchhhhcCC-------CCCccccccccCCccc
Q 021570 237 DTRGKVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFISKPYLACVP-------YPPPSLCLTCQSESVL 303 (311)
Q Consensus 237 Ql~~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s~~~~~~~~-------~~~~tiadgl~~~~~~ 303 (311)
|+++.+|+||+|+|+||+++|++.++|+++|++|||||||+++++|..++. ....|+|||++++.+.
T Consensus 254 Ql~~~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVIGVEp~~a~~~~~s~~~G~~v~~~~~~tiAdGiav~~~G 327 (591)
T PLN02550 254 QHQGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGVEPSDANAMALSLHHGERVMLDQVGGFADGVAVKEVG 327 (591)
T ss_pred HcCCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCccccCCCCCccceeecCCCC
Confidence 997669999999999999999999999999999999999999999986632 3567999999998753
No 40
>PRK08639 threonine dehydratase; Validated
Probab=100.00 E-value=5.6e-49 Score=383.97 Aligned_cols=229 Identities=24% Similarity=0.299 Sum_probs=202.7
Q ss_pred CccccchhhhcccccCCCceeecccccccCCCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChH
Q 021570 68 GIEGLNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNT 147 (311)
Q Consensus 68 ~~~~~~~~~~i~~~~g~TPL~~~~~l~~~~g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~ 147 (311)
+.+...++.++...+++|||++++++++..|.+||+|+|++|||||||||+|.+++.++.+... .++|+++|+|||
T Consensus 9 ~~~i~~a~~~i~~~i~~TPl~~~~~ls~~~g~~l~~K~E~~~ptGSfK~RgA~~~i~~l~~~~~----~~~Vv~aSsGN~ 84 (420)
T PRK08639 9 AKDIDKAAKRLKDVVPETPLQRNDYLSEKYGANVYLKREDLQPVRSYKLRGAYNAISQLSDEEL----AAGVVCASAGNH 84 (420)
T ss_pred HHHHHHHHHHHhCcCcCCCccchHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhh----CCEEEEECccHH
Confidence 3455567788999999999999999998889999999999999999999999999988533221 256999999999
Q ss_pred HHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEE---EEECCCCChHHHHHHHHHHHHhCCCceeeCCCCCCcchH
Q 021570 148 GIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAEL---VLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPK 224 (311)
Q Consensus 148 g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V---~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~ 224 (311)
|+++|++|+++|++|+||||++++..|+..++.|||+| +.++.+ ++++++.+.+++++. +++|++||+|++++
T Consensus 85 g~alA~~a~~~G~~~~IvmP~~~~~~k~~~~r~~GA~vv~v~~~g~~--~~~a~~~a~~~a~~~-g~~~~~~~~~~~~~- 160 (420)
T PRK08639 85 AQGVAYACRHLGIPGVIFMPVTTPQQKIDQVRFFGGEFVEIVLVGDT--FDDSAAAAQEYAEET-GATFIPPFDDPDVI- 160 (420)
T ss_pred HHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHcCCCeeEEEEeCcC--HHHHHHHHHHHHHhc-CCcccCCCCChhHh-
Confidence 99999999999999999999999999999999999974 334433 899999999998875 79999999999999
Q ss_pred hhHHHHHHHHHHHcCCC--CCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCCchhhhcC----C---CCCccccc
Q 021570 225 IHYETTGPEIWEDTRGK--VDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFISKPYLACV----P---YPPPSLCL 295 (311)
Q Consensus 225 ~G~~t~a~Ei~~Ql~~~--pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s~~~~~~~----~---~~~~tiad 295 (311)
+||+|+|+||++|+++. ||+||+|+|+||+++|++.+||+.+|++|||||||+++++|..++ + ...+|+||
T Consensus 161 ~G~~tig~EI~eq~~~~~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~ 240 (420)
T PRK08639 161 AGQGTVAVEILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGVEPAGAASMKAALEAGKPVTLEKIDKFVD 240 (420)
T ss_pred cchhHHHHHHHHhccccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCCCcHHHHHhCCCceeCCCCCCeec
Confidence 59999999999999865 999999999999999999999999999999999999999987653 1 45689999
Q ss_pred cccCCcccc
Q 021570 296 TCQSESVLK 304 (311)
Q Consensus 296 gl~~~~~~~ 304 (311)
|++++.+..
T Consensus 241 gi~v~~~g~ 249 (420)
T PRK08639 241 GAAVARVGD 249 (420)
T ss_pred ccccCCccH
Confidence 999887643
No 41
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=100.00 E-value=1.8e-48 Score=367.40 Aligned_cols=217 Identities=22% Similarity=0.259 Sum_probs=195.4
Q ss_pred CCceeecccccccCCCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEE
Q 021570 84 KTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLI 163 (311)
Q Consensus 84 ~TPL~~~~~l~~~~g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~ 163 (311)
+|||++++++.+.+|.+||+|+|++|||||||||++.+++.++.++|. .++ ++|+++|+||||.|+|++|+.+|++|+
T Consensus 1 ~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-~~~-~~vv~aSsGN~g~alA~~a~~~G~~~~ 78 (316)
T cd06448 1 KTPLIESTALSKTAGCNVFLKLENLQPSGSFKIRGIGHLCQKSAKQGL-NEC-VHVVCSSGGNAGLAAAYAARKLGVPCT 78 (316)
T ss_pred CCCccccchhhHhhCCeEEEEeccCCCcCChHHHHHHHHHHHHHHhhc-ccC-CeEEEeCCcHHHHHHHHHHHHcCCCEE
Confidence 599999999998888999999999999999999999999999999985 223 679999999999999999999999999
Q ss_pred EEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCCCCCCcchHhhHHHHHHHHHHHcCC--C
Q 021570 164 LTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEIWEDTRG--K 241 (311)
Q Consensus 164 vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~t~a~Ei~~Ql~~--~ 241 (311)
||||+++++.|+++|+.|||+|+.++++. ++++.+.+.+++++.++++|+++|+||.+++ ||+|+++||++|+++ .
T Consensus 79 iv~p~~~~~~k~~~l~~~GA~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~n~~~~~-g~~t~~~Ei~~q~~~~~~ 156 (316)
T cd06448 79 IVVPESTKPRVVEKLRDEGATVVVHGKVW-WEADNYLREELAENDPGPVYVHPFDDPLIWE-GHSSMVDEIAQQLQSQEK 156 (316)
T ss_pred EEECCCCCHHHHHHHHHcCCEEEEECCch-HHHHHHHHHHHHhccCCcEEeCCCCCchhhc-cccHHHHHHHHHccccCC
Confidence 99999999999999999999999998763 6677777888777655789999999999995 889999999999986 5
Q ss_pred CCEEEEccChhhHHHHHHHHHHhcC-CCCEEEEEeCCCCchhhhcC-------CCCCccccccccCCcccc
Q 021570 242 VDIFIGGIGTGGTISGAGRYLKEKN-PNIKVIIFVLFISKPYLACV-------PYPPPSLCLTCQSESVLK 304 (311)
Q Consensus 242 pD~vv~pvG~Gg~~~Gi~~~lk~~~-p~~~iigVe~~~s~~~~~~~-------~~~~~tiadgl~~~~~~~ 304 (311)
||+||+|+|+||+++|++++||+.+ |+++||+|||++++++..++ ....+|+++||.++.+..
T Consensus 157 ~D~vv~~vG~Gg~~~Gv~~~~k~~~~~~~~ii~Vep~g~~~~~~~~~~g~~~~~~~~~t~a~glg~~~~~~ 227 (316)
T cd06448 157 VDAIVCSVGGGGLLNGIVQGLERNGWGDIPVVAVETEGAHSLNASLKAGKLVTLPKITSVATSLGAKTVSS 227 (316)
T ss_pred CCEEEEEeCchHHHHHHHHHHHhcCCCCCEEEEEeeCCChHHHHHHHcCCcEecCCCCchhhccCCCCcCH
Confidence 9999999999999999999999996 99999999999999997652 134579999998887643
No 42
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=100.00 E-value=1.4e-48 Score=376.77 Aligned_cols=211 Identities=26% Similarity=0.297 Sum_probs=195.7
Q ss_pred CceeecccccccCCCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEE
Q 021570 85 TPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLIL 164 (311)
Q Consensus 85 TPL~~~~~l~~~~g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~v 164 (311)
|||+++++|++..|.+||+|+|++|||||||||++.+++.++.++|.. ++|+++|+||||+|+|++|+++|++|+|
T Consensus 1 TPl~~~~~ls~~~g~~i~~K~E~~~ptgS~K~R~a~~~i~~~~~~~~~----~~vv~aSsGN~g~alA~~a~~~G~~~~i 76 (380)
T TIGR01127 1 TPLIYSTTLSDITGSEVYLKLENLQKTGSFKIRGALNKIANLSEDQRQ----RGVVAASAGNHAQGVAYAAKKFGIKAVI 76 (380)
T ss_pred CCceehHHHHHHhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhccC----CEEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence 899999999998999999999999999999999999999999988862 4699999999999999999999999999
Q ss_pred EECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCCCCCCcchHhhHHHHHHHHHHHcCCCCCE
Q 021570 165 TMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEIWEDTRGKVDI 244 (311)
Q Consensus 165 v~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~t~a~Ei~~Ql~~~pD~ 244 (311)
|||++++..|+++++.|||+|+.++.+ ++++++.|.+++++. +++|++||+|++++ +||+|+|+||++|++ .||+
T Consensus 77 v~p~~~~~~k~~~~~~~GA~V~~~~~~--~~~a~~~a~~~~~~~-~~~~~~~~~~~~~~-~g~~t~~~Ei~~q~~-~~D~ 151 (380)
T TIGR01127 77 VMPESAPPSKVKATKSYGAEVILHGDD--YDEAYAFATSLAEEE-GRVFVHPFDDEFVM-AGQGTIGLEIMEDIP-DVDT 151 (380)
T ss_pred EEcCCCcHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHhc-CCEecCCCCChhhh-hhhHHHHHHHHHhCC-CCCE
Confidence 999999999999999999999999865 899999999998875 78999999999999 599999999999997 6999
Q ss_pred EEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCCchhhhcCC-------CCCccccccccCCcccc
Q 021570 245 FIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFISKPYLACVP-------YPPPSLCLTCQSESVLK 304 (311)
Q Consensus 245 vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s~~~~~~~~-------~~~~tiadgl~~~~~~~ 304 (311)
||+|+|+||+++|++.+||+..|++|||||||++++++..++. ...+|+|||++++.+..
T Consensus 152 vv~~vG~Gg~~aGi~~~~k~~~p~~kvigVe~~~~~~~~~~~~~g~~~~~~~~~~~a~g~~~~~~~~ 218 (380)
T TIGR01127 152 VIVPVGGGGLISGVASAAKQINPNVKVIGVEAEGAPSMYESLREGKIKAVESVRTIADGIAVKKPGD 218 (380)
T ss_pred EEEEeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcCCceecCCCCCeecchhCCCccH
Confidence 9999999999999999999999999999999999999876531 35689999999877643
No 43
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=100.00 E-value=1.9e-48 Score=376.79 Aligned_cols=265 Identities=14% Similarity=0.071 Sum_probs=212.0
Q ss_pred ccccCCCCCccccccCcCccchHHHhhcc--ccccccc-CCCcccccccCCCCCCCccccchhhhcccccCCCceeeccc
Q 021570 16 LCISKKSSLATLKLGYISPITAARRLKQN--LYKVSYK-PCNSVVCKAVSVKPQTGIEGLNIAEDVTQLIGKTPMVYLNT 92 (311)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~wRy~~llP~~~~~~~~~~~~~~i~~~~g~TPL~~~~~ 92 (311)
.|+.|..+++ ....|.+|.+.. .+.-. +....+. ..++|||+++||++. . ...+|.|||+++++
T Consensus 4 ~C~~Cg~~~~-~~~~~~C~~c~g-~l~~~y~~~~~~~~~~~~~wry~~~lP~~~----------~-~~~~g~tpl~~~~~ 70 (398)
T TIGR03844 4 RCPGCGEVLP-DHYTLSCPLDCG-LLRAEYAERQLTLRDLPGIFRYYDWLPVTG----------H-LRTRGGPVTYKSEG 70 (398)
T ss_pred EeCCCCCccC-CccccCCCCCCC-ceEEeecccccccccCCchhhhHhhCCCCC----------C-CCCCCCCceeehHH
Confidence 4888888886 566788875431 11111 1111111 148999999999831 1 45777899999999
Q ss_pred ccccCCC-eEEEeeCC-------CCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEE
Q 021570 93 IVKGCVA-NIAAKLEI-------MEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLIL 164 (311)
Q Consensus 93 l~~~~g~-~l~vK~E~-------~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~v 164 (311)
|++.+|. +||+|+|+ +|||||||||++.++|.++.+.|. +.|+++|+||||+|+|++|+++|++|+|
T Consensus 71 L~~~lG~~~v~~K~e~~~~K~E~~npTGSFKdRga~~~i~~a~~~g~-----~~Vv~aSsGN~g~alA~~aa~~Gi~~~I 145 (398)
T TIGR03844 71 LARELGLSDLYITFSGYWPERGAFMRTCSFKELEALPTMQRLKERGG-----KTLVVASAGNTGRAFAEVSAITGQPVIL 145 (398)
T ss_pred HHHHhCCCeEEEEecCcccchhccCCccccHHHHHHHHHHHHHHcCC-----CEEEEECCCHHHHHHHHHHHHcCCcEEE
Confidence 9999998 99996555 899999999999999999999983 6799999999999999999999999999
Q ss_pred EECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCCCCCCcchHhhHHHHHHHHHHHcCCCCCE
Q 021570 165 TMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEIWEDTRGKVDI 244 (311)
Q Consensus 165 v~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~t~a~Ei~~Ql~~~pD~ 244 (311)
|||++++..+...++.+||+|+.++++ |+++++.+.+++++. +++..++++||+.++ |++|+++||+||+++.||+
T Consensus 146 ~vP~~~~~~~~~~~~~~ga~vv~v~g~--~d~a~~~a~~~a~~~-g~~~~~~~~~p~~ie-G~~Ti~~Ei~eql~~~PD~ 221 (398)
T TIGR03844 146 VVPKSSADRLWTTEPASSVLLVTVDGD--YTDAIALADRIATLP-GFVPEGGARNVARRD-GMGTVMLDAAVTIGSLPDH 221 (398)
T ss_pred EECCChHHHHHHHhhCCcEEEEECCCC--HHHHHHHHHHHHHhC-CccccCCCCCHHHHh-hHHHHHHHHHHHcCCCCCE
Confidence 999986543333357899999999987 899999999998775 655556678999995 9999999999999844999
Q ss_pred EEEccChhhHHHHHHHHHHhcC-------CCCEEEEEeCCCCchhhhcCC--------C-C-C-------ccccccccCC
Q 021570 245 FIGGIGTGGTISGAGRYLKEKN-------PNIKVIIFVLFISKPYLACVP--------Y-P-P-------PSLCLTCQSE 300 (311)
Q Consensus 245 vv~pvG~Gg~~~Gi~~~lk~~~-------p~~~iigVe~~~s~~~~~~~~--------~-~-~-------~tiadgl~~~ 300 (311)
||+|+|+|.++.|++++++++. .-+|+++|||++++||.+++. . . + +|+||||+++
T Consensus 222 VvvPvG~G~~~~~~~~~~~~l~~~g~i~~~~P~l~~VQ~eg~~p~~~a~~~g~~~~~~~~~~~~~~~~~~~t~a~~l~i~ 301 (398)
T TIGR03844 222 YFQAVGSGTGGIAAWEAAMRLIEDGRFGSKLPRLHLAQNLPFVPMVNAWQEGRREIIPESDMPDAENSIEEVYSDVLTNR 301 (398)
T ss_pred EEEecCCCHHHHHHHHHHHHHHHcCCccCCCCCEEEEEcCCchHHHHHHHcCCCccccccCCccccccccceecceeeeC
Confidence 9999999999999999998831 224889999999999997731 1 1 2 6899999877
Q ss_pred cc
Q 021570 301 SV 302 (311)
Q Consensus 301 ~~ 302 (311)
.+
T Consensus 302 ~p 303 (398)
T TIGR03844 302 TP 303 (398)
T ss_pred CC
Confidence 65
No 44
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=100.00 E-value=3.6e-48 Score=384.36 Aligned_cols=220 Identities=23% Similarity=0.257 Sum_probs=201.2
Q ss_pred hhcccccCCCceeecccccccCCCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHHHHHHH
Q 021570 76 EDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIA 155 (311)
Q Consensus 76 ~~i~~~~g~TPL~~~~~l~~~~g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA~~a 155 (311)
.++...+++|||+++++|++.+|.+||+|+|++|||||||+|+|.+++..+.++.. ...||++|+||||+++|++|
T Consensus 9 ~~v~~~i~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~----~~gVV~aSaGNha~~vA~aa 84 (499)
T TIGR01124 9 ARVYEAAQETPLQKAAKLSERLGNRILIKREDLQPVFSFKLRGAYNKMAQLSPEQK----ARGVIAASAGNHAQGVAFSA 84 (499)
T ss_pred hHhhCccCCCCeeehHHHHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHHhhHHhc----CCEEEEECCCHHHHHHHHHH
Confidence 46778899999999999999999999999999999999999999999988743322 25699999999999999999
Q ss_pred HHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCCCCCCcchHhhHHHHHHHHH
Q 021570 156 ASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEIW 235 (311)
Q Consensus 156 a~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~t~a~Ei~ 235 (311)
+++|++|+||||++++..|++.++.|||+|+.++.+ ++++.+.|.+++++. +++|++||+||+++ +||+|+|+||+
T Consensus 85 ~~~Gi~~~IvmP~~tp~~Kv~~~r~~GA~Vvl~g~~--~d~a~~~a~~la~~~-g~~~i~p~~~~~~i-~G~gtig~EI~ 160 (499)
T TIGR01124 85 ARLGLKALIVMPETTPDIKVDAVRGFGGEVVLHGAN--FDDAKAKAIELSQEK-GLTFIHPFDDPLVI-AGQGTLALEIL 160 (499)
T ss_pred HHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEeCcC--HHHHHHHHHHHHHhc-CCEeeCCCCChHHH-HhhHHHHHHHH
Confidence 999999999999999999999999999999999866 899999999998875 78999999999999 59999999999
Q ss_pred HHcCCCCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCCchhhhcCC-------CCCccccccccCCccc
Q 021570 236 EDTRGKVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFISKPYLACVP-------YPPPSLCLTCQSESVL 303 (311)
Q Consensus 236 ~Ql~~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s~~~~~~~~-------~~~~tiadgl~~~~~~ 303 (311)
+|+++.||+||+|+|+||+++|++.++|+.+|++|||||||+++++|..++. ....|+|||++++.+.
T Consensus 161 ~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVIgVep~~~~~~~~s~~~g~~~~~~~~~t~adgiav~~~g 235 (499)
T TIGR01124 161 RQVANPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGVEPTDSDCMKQALDAGEPVDLDQVGLFADGVAVKRVG 235 (499)
T ss_pred HhCCCCCCEEEEccCccHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCceeCCCCCCccCcccCCCcc
Confidence 9997679999999999999999999999999999999999999999987532 4578999999998864
No 45
>PRK08813 threonine dehydratase; Provisional
Probab=100.00 E-value=3.4e-48 Score=368.35 Aligned_cols=215 Identities=21% Similarity=0.251 Sum_probs=195.5
Q ss_pred ccccchhhhcccccCCCceeecccccccCCCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHH
Q 021570 69 IEGLNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTG 148 (311)
Q Consensus 69 ~~~~~~~~~i~~~~g~TPL~~~~~l~~~~g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g 148 (311)
.+...++.++...+++|||++++.+ +||+|+|++|||||||||++.++|.++.++|.. +.||++|+||||
T Consensus 24 ~~i~~A~~~i~~~i~~TPL~~~~~l------~v~lK~E~~nptGSfK~RgA~~~l~~a~~~~~~----~~VV~aSsGN~G 93 (349)
T PRK08813 24 ADVLAAQARLRRYLSPTPLHYAERF------GVWLKLENLQRTGSYKVRGALNALLAGLERGDE----RPVICASAGNHA 93 (349)
T ss_pred HHHHHHHHHHhCcCCCCCeEECCCC------cEEEEecCCCCcCCCHHHHHHHHHHHHHHcCCC----CeEEEECCCHHH
Confidence 3556678899999999999998765 499999999999999999999999999999863 359999999999
Q ss_pred HHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCCCCCCcchHhhHH
Q 021570 149 IGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYE 228 (311)
Q Consensus 149 ~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~ 228 (311)
+|+|++|+.+|++|+||||+++++.|+++++.|||+|+.++++ |+++.+.+.+++++. +++|+++|+||++++ ||+
T Consensus 94 ~alA~aa~~~Gi~~~IvvP~~~~~~K~~~i~~~GAeVv~~g~~--~~~a~~~a~~la~~~-g~~~v~~~~np~~i~-G~~ 169 (349)
T PRK08813 94 QGVAWSAYRLGVQAITVMPHGAPQTKIAGVAHWGATVRQHGNS--YDEAYAFARELADQN-GYRFLSAFDDPDVIA-GQG 169 (349)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhc-CCEEcCccCChHHHH-HHH
Confidence 9999999999999999999999999999999999999999876 899999999999875 889999999999995 999
Q ss_pred HHHHHHHHHcCCCCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCCchhhhcCC------CCCccccccccCCcc
Q 021570 229 TTGPEIWEDTRGKVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFISKPYLACVP------YPPPSLCLTCQSESV 302 (311)
Q Consensus 229 t~a~Ei~~Ql~~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s~~~~~~~~------~~~~tiadgl~~~~~ 302 (311)
|+|+||++| .||+||+|+|+||+++|++++||+ +++|||+|||++++++.+++. ...+|+|||++++.+
T Consensus 170 Tig~EI~e~---~pD~VvvpvGgGGliaGia~~lk~--~~~rVigVqpega~~~~~s~~g~~~~~~~~~tiadgl~~~~p 244 (349)
T PRK08813 170 TVGIELAAH---APDVVIVPIGGGGLASGVALALKS--QGVRVVGAQVEGVDSMARAIRGDLREIAPVATLADGVKVKIP 244 (349)
T ss_pred HHHHHHHcC---CCCEEEEEeCccHHHHHHHHHHhc--CCCEEEEEEECCCchHHHHHcCCCcccCCCCceecccccCCc
Confidence 999999987 489999999999999999999996 468999999999999987642 235799999998765
No 46
>PRK07334 threonine dehydratase; Provisional
Probab=100.00 E-value=2.7e-48 Score=377.39 Aligned_cols=226 Identities=21% Similarity=0.248 Sum_probs=204.3
Q ss_pred ccccchhhhcccccCCCceeecccccccCCCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHH
Q 021570 69 IEGLNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTG 148 (311)
Q Consensus 69 ~~~~~~~~~i~~~~g~TPL~~~~~l~~~~g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g 148 (311)
++...+..++...+++|||++++++++.+|.+||+|+|++|||||||||++.+++.++.+++. .+.|+++|+||||
T Consensus 8 ~~i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~~~~~~~----~~~vv~aSsGN~g 83 (403)
T PRK07334 8 ADIRAAAARLAGQVLRTPCVHSRTLSQITGAEVWLKFENLQFTASFKERGALNKLLLLTEEER----ARGVIAMSAGNHA 83 (403)
T ss_pred HHHHHHHHHHhCCCCCCCccchHHHHHhhCCeEEEEeccCCCCCCchHHHHHHHHHhcCHHHh----CCcEEEECCcHHH
Confidence 345567788999999999999999998888999999999999999999999999998765432 2459999999999
Q ss_pred HHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCCCCCCcchHhhHH
Q 021570 149 IGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYE 228 (311)
Q Consensus 149 ~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~ 228 (311)
+|+|++|+++|++|+||||+++++.|+++++.|||+|+.++++ ++++++.+.+++++. +++|++||+|+.++ +||+
T Consensus 84 ~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~--~~~~~~~a~~l~~~~-~~~~~~~~~~~~~~-~g~~ 159 (403)
T PRK07334 84 QGVAYHAQRLGIPATIVMPRFTPTVKVERTRGFGAEVVLHGET--LDEARAHARELAEEE-GLTFVHPYDDPAVI-AGQG 159 (403)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECcC--HHHHHHHHHHHHHhc-CCEecCCCCCHHHH-HhHH
Confidence 9999999999999999999999999999999999999999865 899999999998875 88999999999999 5999
Q ss_pred HHHHHHHHHcCCCCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCCchhhhcCC-----CCCccccccccCCccc
Q 021570 229 TTGPEIWEDTRGKVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFISKPYLACVP-----YPPPSLCLTCQSESVL 303 (311)
Q Consensus 229 t~a~Ei~~Ql~~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s~~~~~~~~-----~~~~tiadgl~~~~~~ 303 (311)
|+|+||++|++ .||+||+|+|+||+++|++++||+.+|++|||+|||++++++..++. ...+|+++||+++.+.
T Consensus 160 t~~~Ei~~q~~-~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~ve~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~ 238 (403)
T PRK07334 160 TVALEMLEDAP-DLDTLVVPIGGGGLISGMATAAKALKPDIEIIGVQTELYPSMYAAIKGVALPCGGSTIAEGIAVKQPG 238 (403)
T ss_pred HHHHHHHhcCC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHhCCCccCCCCCccceecCCCcc
Confidence 99999999996 79999999999999999999999999999999999999999986532 3467999999987654
No 47
>PLN02356 phosphateglycerate kinase
Probab=100.00 E-value=1.1e-47 Score=371.22 Aligned_cols=229 Identities=32% Similarity=0.537 Sum_probs=192.2
Q ss_pred hhcccccCCCceeecccccccCCCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHHHHHHH
Q 021570 76 EDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIA 155 (311)
Q Consensus 76 ~~i~~~~g~TPL~~~~~l~~~~g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA~~a 155 (311)
..+...+|+|||++++++....|.+||+|+|++|||||||||++.++|.+|.++|.+.++ .+|+++|+||||+|+|++|
T Consensus 45 ~~~~~~ig~TPLv~~~~l~~~~g~~v~~KlE~~nPtGS~KdR~A~~~i~~a~~~g~~~~~-g~VveaSSGN~g~alA~~a 123 (423)
T PLN02356 45 NGLIDAIGNTPLIRINSLSEATGCEILGKCEFLNPGGSVKDRVAVKIIEEALESGQLFPG-GVVTEGSAGSTAISLATVA 123 (423)
T ss_pred hhHHhhcCCCceEECcccccccCCEEEEEeccCCCCCCHHHHHHHHHHHHHHhCCccCCC-CEEEEeCCHHHHHHHHHHH
Confidence 446677899999999999888889999999999999999999999999999999988776 5788899999999999999
Q ss_pred HHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCC-----CCh-HHHH---HHHHHHHHh-------------------
Q 021570 156 ASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSA-----KGM-KGAV---QKAEEILNS------------------- 207 (311)
Q Consensus 156 a~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~-----~~~-~~a~---~~a~~~~~~------------------- 207 (311)
+.+|++|+||||+++++.|+++|+.|||+|+.+++. ..+ ..+. +.+.+++++
T Consensus 124 a~~G~~~~ivvP~~~s~~K~~~ir~~GAeVi~v~~~~~~~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~~~~~~~~~~~~ 203 (423)
T PLN02356 124 PAYGCKCHVVIPDDVAIEKSQILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDGIHLEKTNGCI 203 (423)
T ss_pred HHcCCcEEEEECCCCcHHHHHHHHHcCCEEEEECCccCCCcchhHHHHHHHHHHHHHHHHHhhhcccccccccccccccc
Confidence 999999999999999999999999999999999641 112 1122 224444432
Q ss_pred -------------CCCceeeCCCCCCcchHhhHHHHHHHHHHHcCCCCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEE
Q 021570 208 -------------TPNAYMLQQFDNPANPKIHYETTGPEIWEDTRGKVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIF 274 (311)
Q Consensus 208 -------------~~~~~~~~~~~n~~~~~~G~~t~a~Ei~~Ql~~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigV 274 (311)
.++.+|++||+|+.++..|+..+|+||++|+++.||+||+|+|+||+++|++++||+.+|++|||+|
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~q~~n~~n~~ahg~gTg~EI~eQl~g~~D~vVv~vGtGGti~Gva~~lK~~~P~vkVigV 283 (423)
T PLN02356 204 SEEEKENSLFSSSCTGGFFADQFENLANFRAHYEGTGPEIWEQTQGNLDAFVAAAGTGGTLAGVSRFLQEKNPNIKCFLI 283 (423)
T ss_pred ccccccccccccCCCCcEecCccCCcchHHHHHhhHHHHHHHhcCCCCCEEEeCCCchHHHHHHHHHHHHhCCCCEEEEE
Confidence 1477999999999997666555699999999878999999999999999999999999999999999
Q ss_pred eCCCCchh---------hhc----CC--CCCccccccccCCccccc
Q 021570 275 VLFISKPY---------LAC----VP--YPPPSLCLTCQSESVLKL 305 (311)
Q Consensus 275 e~~~s~~~---------~~~----~~--~~~~tiadgl~~~~~~~~ 305 (311)
||+++..+ .++ .. ...+|+++||+++.+...
T Consensus 284 ep~~s~~~~~~~~~~~~~~s~~~G~~~~~~~~tia~Gig~~~~~~~ 329 (423)
T PLN02356 284 DPPGSGLFNKVTRGVMYTREEAEGRRLKNPFDTITEGIGINRLTQN 329 (423)
T ss_pred ecCCCccccccccchhhhhhhhcCCccCCCCCeecCcCcCCCCChh
Confidence 99998633 111 11 223799999998865443
No 48
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-48 Score=362.60 Aligned_cols=225 Identities=20% Similarity=0.207 Sum_probs=208.7
Q ss_pred ccchhhhcccccCCCceeecccccccCCCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHH
Q 021570 71 GLNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIG 150 (311)
Q Consensus 71 ~~~~~~~i~~~~g~TPL~~~~~l~~~~g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~A 150 (311)
....+..+...+-.|||.+.-.|++.+|.++|+|+|++||+||||.||+.+++.+.-+++. ...|+++|.||||+|
T Consensus 53 ~~~~~~~i~~~~~~TPl~~s~~lS~~~g~~vyLK~E~lQpsgSFK~RGa~~~~~kla~~~~----~~gViasSaGNha~a 128 (457)
T KOG1250|consen 53 ISSAHFKIYPVIVETPLLKSVALSKKAGMPVYLKREDLQPSGSFKIRGAGNALQKLAKQQK----KAGVIASSAGNHAQA 128 (457)
T ss_pred hhhhhhccccceecccchhhhhhhhhcCCceEEEehhcccccceehhhHHHHHHHHHHhhh----cCceEEecCccHHHH
Confidence 3445677888899999999999999999999999999999999999999999998777664 356999999999999
Q ss_pred HHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCCCCCCcchHhhHHHH
Q 021570 151 LAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYETT 230 (311)
Q Consensus 151 lA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~t~ 230 (311)
+|++|+++|++++||||..+|..|.+.++.+||+|++.+.+ +++|...|.++++++ ++.|+++||+|+.+ +|++|+
T Consensus 129 ~Ayaa~~LgipaTIVmP~~tp~~kiq~~~nlGA~Vil~G~~--~deAk~~a~~lAke~-gl~yI~pfDhP~I~-aGqgTi 204 (457)
T KOG1250|consen 129 AAYAARKLGIPATIVMPVATPLMKIQRCRNLGATVILSGED--WDEAKAFAKRLAKEN-GLTYIPPFDHPDIW-AGQGTI 204 (457)
T ss_pred HHHHHHhcCCceEEEecCCChHHHHHHHhccCCEEEEeccc--HHHHHHHHHHHHHhc-CceecCCCCCchhh-cCcchH
Confidence 99999999999999999999999999999999999999988 899999999999987 99999999999999 599999
Q ss_pred HHHHHHHcCCCCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCCchhhhcCC-------CCCccccccccCCccc
Q 021570 231 GPEIWEDTRGKVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFISKPYLACVP-------YPPPSLCLTCQSESVL 303 (311)
Q Consensus 231 a~Ei~~Ql~~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s~~~~~~~~-------~~~~tiadgl~~~~~~ 303 (311)
+.||++|+...+++|++|||+||+++||+.|+|+..|+++|||||+++|.+|..+.. +...|+|||++++.+.
T Consensus 205 g~EIl~ql~~~~~AI~vpVGGGGLiaGIat~vk~~~p~vkIIGVEt~~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg 284 (457)
T KOG1250|consen 205 GLEILEQLKEPDGAIVVPVGGGGLIAGIATGVKRVGPHVKIIGVETEGAHSFNASLKAGKPVTLPKITSLADGLAVKTVG 284 (457)
T ss_pred HHHHHHhhcCCCCeEEEecCCchhHHHHHHHHHHhCCCCceEEEeecCcHHHHHHHhcCCeeecccccchhcccccchhh
Confidence 999999997656699999999999999999999999999999999999999988742 6788999999999875
No 49
>PRK09224 threonine dehydratase; Reviewed
Probab=100.00 E-value=1.2e-47 Score=381.76 Aligned_cols=220 Identities=23% Similarity=0.282 Sum_probs=200.9
Q ss_pred hhcccccCCCceeecccccccCCCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHHHHHHH
Q 021570 76 EDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIA 155 (311)
Q Consensus 76 ~~i~~~~g~TPL~~~~~l~~~~g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA~~a 155 (311)
.++...+++|||+++++|++.+|.+||+|+|++|||||||+|+|.+++..+.++.. .+.||++|+||||+++|++|
T Consensus 12 ~~v~~~~~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~----~~gvV~aSaGNha~avA~aa 87 (504)
T PRK09224 12 ARVYDVAQETPLEKAPKLSARLGNQVLLKREDLQPVFSFKLRGAYNKMAQLTEEQL----ARGVITASAGNHAQGVALSA 87 (504)
T ss_pred HHhcCcCCCCCceehhHhHHHhCCEEEEEecCCCCCCCChHHHHHHHHHhhhHHhc----CCEEEEECcCHHHHHHHHHH
Confidence 46778899999999999999999999999999999999999999999998764321 25699999999999999999
Q ss_pred HHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCCCCCCcchHhhHHHHHHHHH
Q 021570 156 ASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEIW 235 (311)
Q Consensus 156 a~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~t~a~Ei~ 235 (311)
+++|++|+||||++++..|++.++.|||+|+.++.+ |+++.+.|.+++++. +++|+++|+||+++ +||+|+|+||+
T Consensus 88 ~~lGi~~~IvmP~~tp~~K~~~~r~~GA~Vi~~g~~--~~~a~~~a~~l~~~~-g~~~v~~f~~~~~i-~G~gTi~~EI~ 163 (504)
T PRK09224 88 ARLGIKAVIVMPVTTPDIKVDAVRAFGGEVVLHGDS--FDEAYAHAIELAEEE-GLTFIHPFDDPDVI-AGQGTIAMEIL 163 (504)
T ss_pred HHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECCC--HHHHHHHHHHHHHhc-CCEEeCCCCCcHHH-HhHHHHHHHHH
Confidence 999999999999999999999999999999999865 899999999998875 88999999999999 59999999999
Q ss_pred HHcCCCCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCCchhhhcCC-------CCCccccccccCCccc
Q 021570 236 EDTRGKVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFISKPYLACVP-------YPPPSLCLTCQSESVL 303 (311)
Q Consensus 236 ~Ql~~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s~~~~~~~~-------~~~~tiadgl~~~~~~ 303 (311)
+|+++.||+||+|+|+||+++|++.++|++.|++|||||||+++++|..++. +...|+|||++++.+.
T Consensus 164 ~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVigVe~~~~~~~~~s~~~g~~~~~~~~~~~adg~av~~~g 238 (504)
T PRK09224 164 QQHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVEPEDSACLKAALEAGERVDLPQVGLFADGVAVKRIG 238 (504)
T ss_pred HhccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCCccCCCCCcccCcccCCCcc
Confidence 9997569999999999999999999999999999999999999999987531 4567999999988763
No 50
>PRK06815 hypothetical protein; Provisional
Probab=100.00 E-value=9.9e-48 Score=362.59 Aligned_cols=224 Identities=20% Similarity=0.214 Sum_probs=200.3
Q ss_pred ccccchhhhcccccCCCceeecccccccCCCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHH
Q 021570 69 IEGLNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTG 148 (311)
Q Consensus 69 ~~~~~~~~~i~~~~g~TPL~~~~~l~~~~g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g 148 (311)
++...++.++...+++|||++++++++..|.+||+|+|++|||||||||++.+++.++.++.. ..+|+++|+||||
T Consensus 5 ~~i~~a~~~~~~~i~~TPLv~~~~l~~~~g~~i~~K~E~~nptgS~KdR~a~~~~~~l~~~~~----~~~vv~aSsGN~g 80 (317)
T PRK06815 5 DAILEAHQRLRPQVRVTPLEHSPLLSQHTGCEVYLKCEHLQHTGSFKFRGASNKLRLLNEAQR----QQGVITASSGNHG 80 (317)
T ss_pred HHHHHHHHHhhCCCCCCCccccHhHHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhhc----CceEEEECCChHH
Confidence 345567788899999999999999998888999999999999999999999999987543321 2569999999999
Q ss_pred HHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCCCCCCcchHhhHH
Q 021570 149 IGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYE 228 (311)
Q Consensus 149 ~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~ 228 (311)
+|+|++|+.+|++|+||||+++++.|+.+++.|||+|+.++++ ++++...+.+++++. +.+|+++|+|++++ +||+
T Consensus 81 ~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~V~~~~~~--~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~-~g~~ 156 (317)
T PRK06815 81 QGVALAAKLAGIPVTVYAPEQASAIKLDAIRALGAEVRLYGGD--ALNAELAARRAAEQQ-GKVYISPYNDPQVI-AGQG 156 (317)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHhc-CCEEecCCCChhhh-cchh
Confidence 9999999999999999999999999999999999999999986 788888898888765 78999999999998 4999
Q ss_pred HHHHHHHHHcCCCCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCCchhhhcCC-------CCCccccccccCCc
Q 021570 229 TTGPEIWEDTRGKVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFISKPYLACVP-------YPPPSLCLTCQSES 301 (311)
Q Consensus 229 t~a~Ei~~Ql~~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s~~~~~~~~-------~~~~tiadgl~~~~ 301 (311)
|+++||++|++ .||+||+|+|+||+++|++++||++.|+++||||||++++++.+++. ...+|+++|++.+.
T Consensus 157 t~a~Ei~~q~~-~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~ 235 (317)
T PRK06815 157 TIGMELVEQQP-DLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGCWPANSPSLYTSLEAGEIVEVAEQPTLSDGTAGGV 235 (317)
T ss_pred HHHHHHHHhcC-CCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCcccCCCCCChhhhhccCC
Confidence 99999999997 59999999999999999999999999999999999999999987521 34678999986553
No 51
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=100.00 E-value=2.5e-47 Score=357.07 Aligned_cols=224 Identities=22% Similarity=0.257 Sum_probs=204.0
Q ss_pred ccchhhhcccccCCCceeecccccccCCCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHH
Q 021570 71 GLNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIG 150 (311)
Q Consensus 71 ~~~~~~~i~~~~g~TPL~~~~~l~~~~g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~A 150 (311)
+.+++..|...+|+|||+++++|++.+|.+||+|+|++|||||||||++.+++.+++++|. ..+|+++|+||||.|
T Consensus 4 ~~~~~~~i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptgS~Kdr~a~~~l~~~~~~~~----~~~iv~~ssGN~g~a 79 (304)
T cd01562 4 ILAAAARIKPVVRRTPLLTSPTLSELLGAEVYLKCENLQKTGSFKIRGAYNKLLSLSEEER----AKGVVAASAGNHAQG 79 (304)
T ss_pred HHHHHHHHhCcCCCCCcccchhhHHHhCCeEEEEeccCCCcCCcHHHhHHHHHHhcCHhhc----CCcEEEECCCHHHHH
Confidence 4556778889999999999999998889999999999999999999999999999988772 256999999999999
Q ss_pred HHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCCCCCCcchHhhHHHH
Q 021570 151 LAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYETT 230 (311)
Q Consensus 151 lA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~t~ 230 (311)
+|++|+.+|++|++|||++.+..|+++++.+||+|+.++++ ++++++.+.+++++. +++|++|++|+.+++ ||+++
T Consensus 80 lA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~Ga~vi~~~~~--~~~~~~~a~~la~~~-~~~~~~~~~n~~~~~-g~~~~ 155 (304)
T cd01562 80 VAYAAKLLGIPATIVMPETAPAAKVDATRAYGAEVVLYGED--FDEAEAKARELAEEE-GLTFIHPFDDPDVIA-GQGTI 155 (304)
T ss_pred HHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCC--HHHHHHHHHHHHHhc-CCEEeCCCCCcchhc-cHHHH
Confidence 99999999999999999999999999999999999999986 899999999998875 789999999999985 99999
Q ss_pred HHHHHHHcCCCCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCCchhhhcCC-------CCCccccccccCCccc
Q 021570 231 GPEIWEDTRGKVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFISKPYLACVP-------YPPPSLCLTCQSESVL 303 (311)
Q Consensus 231 a~Ei~~Ql~~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s~~~~~~~~-------~~~~tiadgl~~~~~~ 303 (311)
++||++|+++ ||+||+|+|+||+++|++++||+..|++|||+|||++++++..++. ...+|+++|+.++.+.
T Consensus 156 ~~Ei~~q~~~-~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~ 234 (304)
T cd01562 156 GLEILEQVPD-LDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVEPEGAPAMAQSLAAGKPVTLPEVDTIADGLAVKRPG 234 (304)
T ss_pred HHHHHHhcCC-CCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHcCCcccCCCCCcccccccCCCch
Confidence 9999999974 9999999999999999999999999999999999999999876421 3357999999887654
No 52
>PRK08246 threonine dehydratase; Provisional
Probab=100.00 E-value=5.1e-47 Score=356.70 Aligned_cols=222 Identities=23% Similarity=0.276 Sum_probs=198.1
Q ss_pred CCccccchhhhcccccCCCceeecccccccCCCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcCh
Q 021570 67 TGIEGLNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGN 146 (311)
Q Consensus 67 ~~~~~~~~~~~i~~~~g~TPL~~~~~l~~~~g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN 146 (311)
++++...+.+++...+++|||++++++... +.+||+|+|++|||||||||++.+++.++.+ + .++||++|+||
T Consensus 6 ~~~~i~~a~~~i~~~i~~TPl~~~~~l~~~-~~~i~~K~E~~nptGS~K~R~a~~~~~~~~~-~-----~~~vv~aSsGN 78 (310)
T PRK08246 6 TRSDVRAAAQRIAPHIRRTPVLEADGAGFG-PAPVWLKLEHLQHTGSFKARGAFNRLLAAPV-P-----AAGVVAASGGN 78 (310)
T ss_pred CHHHHHHHHHHHhCcCCCCCeeeccccccC-CCEEEEEECCCCCCCCCHHHHHHHHHHhhcc-c-----CCeEEEeCCCH
Confidence 356677788899999999999999998876 7899999999999999999999999988766 2 26799999999
Q ss_pred HHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCCCCCCcchHhh
Q 021570 147 TGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIH 226 (311)
Q Consensus 147 ~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G 226 (311)
||+|+|++|+++|++|+||||+++++.|+.+++.|||+|+.++.+ ++++++.+.+++++. +++|++||+||++++ |
T Consensus 79 ~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~--~~~~~~~a~~~~~~~-g~~~~~~~~n~~~i~-g 154 (310)
T PRK08246 79 AGLAVAYAAAALGVPATVFVPETAPPAKVARLRALGAEVVVVGAE--YADALEAAQAFAAET-GALLCHAYDQPEVLA-G 154 (310)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEeCCC--HHHHHHHHHHHHHhc-CCEeCCCCCChhhhc-c
Confidence 999999999999999999999999999999999999999999876 888999999988775 889999999999995 9
Q ss_pred HHHHHHHHHHHcCCCCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCCchhhhcCC-------CCCccccccccC
Q 021570 227 YETTGPEIWEDTRGKVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFISKPYLACVP-------YPPPSLCLTCQS 299 (311)
Q Consensus 227 ~~t~a~Ei~~Ql~~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s~~~~~~~~-------~~~~tiadgl~~ 299 (311)
|+|+++||++|++ .||+||+|+|+||+++|++++|+. .+|||+|||++++++..++. ....++++++++
T Consensus 155 ~~t~~~Ei~eq~~-~~D~iv~~vG~GG~~~Gi~~~~~~---~~~vi~ve~~~~~~~~~s~~~g~~~~~~~~~~~~~~l~~ 230 (310)
T PRK08246 155 AGTLGLEIEEQAP-GVDTVLVAVGGGGLIAGIAAWFEG---RARVVAVEPEGAPTLHAALAAGEPVDVPVSGIAADSLGA 230 (310)
T ss_pred hHHHHHHHHHhcC-CCCEEEEecCccHHHHHHHHHhcC---CCEEEEEeeCCChHHHHHHHcCCcccCCCCCceeccccC
Confidence 9999999999996 799999999999999999999975 47999999999999987521 234566788888
Q ss_pred Cccc
Q 021570 300 ESVL 303 (311)
Q Consensus 300 ~~~~ 303 (311)
+.+.
T Consensus 231 ~~~~ 234 (310)
T PRK08246 231 RRVG 234 (310)
T ss_pred CCcc
Confidence 7653
No 53
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=100.00 E-value=2.9e-47 Score=360.68 Aligned_cols=229 Identities=20% Similarity=0.147 Sum_probs=200.8
Q ss_pred cccccccCCCCCCCccccchhhhcccccCCCceeecccccccCCC-eEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCC
Q 021570 55 SVVCKAVSVKPQTGIEGLNIAEDVTQLIGKTPMVYLNTIVKGCVA-NIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLIT 133 (311)
Q Consensus 55 ~wRy~~llP~~~~~~~~~~~~~~i~~~~g~TPL~~~~~l~~~~g~-~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~ 133 (311)
+|||+++||++. ..+.+.+.+++|||++++++.+.+|. +||+|+|++|||||||||++.+++.++.++|.
T Consensus 1 ~~~~~~~lp~~~-------~~~~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~-- 71 (328)
T TIGR00260 1 VWRYREFLPVTP-------EKDLVDLGEGVTPLFRSPALVANVGIKNLYVLELFHNPTLSFKDRGMAVALTKALELGN-- 71 (328)
T ss_pred CccchhhcCCCC-------hhhhhhhccCCccCccchHHHHhcCCccEEehhhccCCchhhHhhhHHHHHHHHHHcCC--
Confidence 699999999831 12457889999999999999888887 99999999999999999999999999999884
Q ss_pred CCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCC-CCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCce
Q 021570 134 PGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPAS-MSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAY 212 (311)
Q Consensus 134 ~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~-~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~ 212 (311)
.+|+++|+||||+|+|++|+.+|++|+||||++ +++.|+.+++.|||+|+.++++ ++++.+.+.+++++. +.+
T Consensus 72 ---~~vv~aSsGN~g~a~A~~a~~~g~~~~v~~p~~~~s~~k~~~~~~~GA~Vi~~~~~--~~~~~~~~~~~~~~~-~~~ 145 (328)
T TIGR00260 72 ---DTVLCASTGNTGAAAAAYAGKAGVKVVILYPAGKISLGKLAQALGYNAEVVAIDGN--FDDAQRLVKQLFGDK-EAL 145 (328)
T ss_pred ---CEEEEeCCcHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHhcCcEEEEecCC--HHHHHHHHHHHHhhc-Cee
Confidence 679999999999999999999999999999998 8999999999999999999986 899999999988765 455
Q ss_pred eeCCCCC--CcchHhhHHHHHHHHHHHcCC-CCCEEEEccChhhHHHHHHHHHHhc-------CCCCEEEEEeCCCCchh
Q 021570 213 MLQQFDN--PANPKIHYETTGPEIWEDTRG-KVDIFIGGIGTGGTISGAGRYLKEK-------NPNIKVIIFVLFISKPY 282 (311)
Q Consensus 213 ~~~~~~n--~~~~~~G~~t~a~Ei~~Ql~~-~pD~vv~pvG~Gg~~~Gi~~~lk~~-------~p~~~iigVe~~~s~~~ 282 (311)
++++ .| |.+++ ||+|+++||++|+++ .||+||+|+|+||+++|++.+|++. .| ++++|||++++++
T Consensus 146 ~~~~-~n~~~~~~~-g~~t~~~Ei~~q~~~~~~d~iv~~vG~GG~~~G~~~~~~~~~~~g~~~~p--~v~~Ve~~~~~~~ 221 (328)
T TIGR00260 146 GLNS-VNSIPYRLE-GQKTYAFEAVEQLGWEAPDKVVVPVPNSGNFGAILKGFKEKKEGGLDSLP--VKRGIQAEGAADI 221 (328)
T ss_pred eccc-CCCCCeEee-eehhHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHHHhcCCccCC--ceeEEEcCCCChH
Confidence 5554 44 88885 999999999999985 6999999999999999999999984 45 9999999999888
Q ss_pred hhcC-----C---CCCccccccccCCcc
Q 021570 283 LACV-----P---YPPPSLCLTCQSESV 302 (311)
Q Consensus 283 ~~~~-----~---~~~~tiadgl~~~~~ 302 (311)
...+ . ...+|+++|+.++.+
T Consensus 222 ~~~~~~~g~~~~~~~~~t~~~~l~~~~p 249 (328)
T TIGR00260 222 VRAFLESGQWEPIEDPATLSTAIDIGNP 249 (328)
T ss_pred HHHHHcCCCcCcCCCCCccCcceecCCC
Confidence 6532 1 235799999977654
No 54
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=100.00 E-value=4.3e-46 Score=366.87 Aligned_cols=222 Identities=44% Similarity=0.684 Sum_probs=194.6
Q ss_pred cccccCCCceeecccccccCCCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHHHHHHHHH
Q 021570 78 VTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAAS 157 (311)
Q Consensus 78 i~~~~g~TPL~~~~~l~~~~g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~ 157 (311)
+...+|+|||++++++++..|.+||+|+|++|||||||||++.+++.+|.++|.+.+| ++|+++|+||||+|+|++|+.
T Consensus 5 ~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g-~~vv~~ssGN~g~alA~~a~~ 83 (454)
T TIGR01137 5 IIDLIGNTPLVRLNKVSKGIKCELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLKPG-DTIIEPTSGNTGIGLALVAAI 83 (454)
T ss_pred hHHhcCCCceEEccccCCCCCceEEEEEhhcCCCcchHHHHHHHHHHHHHHcCCCCCC-CEEEEeCCcHHHHHHHHHHHH
Confidence 5566899999999999988888999999999999999999999999999999998887 789999999999999999999
Q ss_pred cCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChH---HHHHHHHHHHHhCCCceeeCCCCCCcchHhhHHHHHHHH
Q 021570 158 KGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMK---GAVQKAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEI 234 (311)
Q Consensus 158 ~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~---~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~t~a~Ei 234 (311)
+|++|+||||+++++.|+.+++.|||+|+.++++..++ ..++.+.+++++.++.+|++||+|+.++.+||+|+|+||
T Consensus 84 ~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~Ei 163 (454)
T TIGR01137 84 KGYKCIIVLPEKMSNEKVDVLKALGAEIVRTPTAAAFDSPESHIGVAKRLVREIPGAHILDQYNNPSNPLAHYDGTGPEI 163 (454)
T ss_pred cCCeEEEEeCCCcCHHHHHHHHHCCCEEEEcCCccCCCchHHHHHHHHHHHHhCCCcEecccCCChhhHHHHHHhhHHHH
Confidence 99999999999999999999999999999998642233 235667777776556788999999999867999999999
Q ss_pred HHHcCCCCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCCchhhhcCC----CCCccccccccCCc
Q 021570 235 WEDTRGKVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFISKPYLACVP----YPPPSLCLTCQSES 301 (311)
Q Consensus 235 ~~Ql~~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s~~~~~~~~----~~~~tiadgl~~~~ 301 (311)
++|+++.||+||+|+|+||+++|++++||+.+|+++||+|||++++ +..+.. ....+.++|+..+.
T Consensus 164 ~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ve~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~ 233 (454)
T TIGR01137 164 LEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADPEGSI-LAQPENLNKTGRTPYKVEGIGYDF 233 (454)
T ss_pred HHHhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEEecCCCc-ccCCCcccCCCCCCccCCCCCCCC
Confidence 9999877999999999999999999999999999999999999985 433321 11246788887653
No 55
>PRK06381 threonine synthase; Validated
Probab=100.00 E-value=1.1e-45 Score=348.90 Aligned_cols=198 Identities=22% Similarity=0.279 Sum_probs=183.2
Q ss_pred ccccCCCceeecccccccCC-CeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHHHHHHHHH
Q 021570 79 TQLIGKTPMVYLNTIVKGCV-ANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAAS 157 (311)
Q Consensus 79 ~~~~g~TPL~~~~~l~~~~g-~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~ 157 (311)
...+|+|||+++++|.+.+| .+||+|+|++|||||||||++.+++.+|+++|. ++|+++|+||||+|+|++|+.
T Consensus 10 ~~~~g~TPL~~~~~l~~~~G~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-----~~lv~aSsGN~g~alA~~aa~ 84 (319)
T PRK06381 10 EKPPGGTPLLRARKLEEELGLRKIYLKFEGANPTGTQKDRIAEAHVRRAMRLGY-----SGITVGTCGNYGASIAYFARL 84 (319)
T ss_pred cccCCCCceeEhHhhHHhcCCceEEEEecCCCCccCcHHHHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHHHH
Confidence 34589999999999998888 599999999999999999999999999999995 679999999999999999999
Q ss_pred cCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCCCC-CC-cchHhhHHHHHHHHH
Q 021570 158 KGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFD-NP-ANPKIHYETTGPEIW 235 (311)
Q Consensus 158 ~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~-n~-~~~~~G~~t~a~Ei~ 235 (311)
+|++|+||||..++..|+++++.|||+|+.++++ ++++++.+.+++++. ++|++++++ |+ .+++ ||+|+++||+
T Consensus 85 ~G~~~~ivvp~~~~~~~~~~l~~~GA~V~~~~~~--~~~~~~~a~~~~~~~-~~~~~~~~~~n~~~~~~-G~~t~a~Ei~ 160 (319)
T PRK06381 85 YGLKAVIFIPRSYSNSRVKEMEKYGAEIIYVDGK--YEEAVERSRKFAKEN-GIYDANPGSVNSVVDIE-AYSAIAYEIY 160 (319)
T ss_pred cCCcEEEEECCCCCHHHHHHHHHcCCEEEEcCCC--HHHHHHHHHHHHHHc-CcEecCCCCCCcchHhh-hHHHHHHHHH
Confidence 9999999999999999999999999999999986 788999999988774 788888886 76 5774 9999999999
Q ss_pred HHcCCCCCEEEEccChhhHHHHHHHHHHhc------CCCCEEEEEeCCCCchhhhc
Q 021570 236 EDTRGKVDIFIGGIGTGGTISGAGRYLKEK------NPNIKVIIFVLFISKPYLAC 285 (311)
Q Consensus 236 ~Ql~~~pD~vv~pvG~Gg~~~Gi~~~lk~~------~p~~~iigVe~~~s~~~~~~ 285 (311)
+|++..||+||+|+|+||+++|++++|+++ .|+++||+|||++++++..+
T Consensus 161 ~ql~~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vigVe~~~~~~~~~~ 216 (319)
T PRK06381 161 EALGDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIGVSTSGGNQIVES 216 (319)
T ss_pred HHhCCCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEEEeeCCCCHHHHH
Confidence 999867999999999999999999999998 78999999999999888765
No 56
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=100.00 E-value=8.2e-46 Score=359.20 Aligned_cols=232 Identities=20% Similarity=0.153 Sum_probs=197.9
Q ss_pred ccccchhhhc--ccccCCCceeecccccccCC-CeEEEeeCCC-CCCCchhhHHHHHHHHHHHH--cCCC----------
Q 021570 69 IEGLNIAEDV--TQLIGKTPMVYLNTIVKGCV-ANIAAKLEIM-EPCCSVKDRIGFSMIADAEQ--KGLI---------- 132 (311)
Q Consensus 69 ~~~~~~~~~i--~~~~g~TPL~~~~~l~~~~g-~~l~vK~E~~-nPtGS~KdRga~~~v~~A~~--~G~~---------- 132 (311)
.+...+..++ ....++|||+++++|++.+| .+||+|+|++ ||||||||||+.+.+.++.. .+.-
T Consensus 27 ~~~~~a~~~~~~~~~~~~TPL~~~~~l~~~~G~~~v~~K~E~~q~ptgSFK~RG~~~~i~~~~~~~~~~~~~~~~~~~l~ 106 (399)
T PRK08206 27 EEAKKARAFHQSFPGYAPTPLVALPDLAAELGVGSILVKDESYRFGLNAFKALGGAYAVARLLAEKLGLDISELSFEELT 106 (399)
T ss_pred HHHHHHHHHHhcCCCCCCCCCcchHHHHHHhCCCcEEEecccCcCCCCChHHhhHHHHHHHHHHHHhCCCcccCCHHHhh
Confidence 3445566777 56889999999999999999 5999999997 59999999999999988763 3320
Q ss_pred -------CCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHH
Q 021570 133 -------TPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEIL 205 (311)
Q Consensus 133 -------~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~ 205 (311)
.++ .+|+++|+||||+|+|++|+.+|++|+||||+++++.|+..++.|||+|+.++++ ++++++.+.+++
T Consensus 107 ~~~~~~~~~~-~~vv~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~~~~k~~~i~~~GA~Vi~v~~~--~~~~~~~a~~~~ 183 (399)
T PRK08206 107 SGEVREKLGD-ITFATATDGNHGRGVAWAAQQLGQKAVIYMPKGSSEERVDAIRALGAECIITDGN--YDDSVRLAAQEA 183 (399)
T ss_pred hhHHHHhccC-CEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCC--HHHHHHHHHHHH
Confidence 011 3699999999999999999999999999999999999999999999999999976 899999999988
Q ss_pred HhCCCceeeC-----CCCC-CcchHhhHHHHHHHHHHHcCC---CCCEEEEccChhhHHHHHHHHHHhcC--CCCEEEEE
Q 021570 206 NSTPNAYMLQ-----QFDN-PANPKIHYETTGPEIWEDTRG---KVDIFIGGIGTGGTISGAGRYLKEKN--PNIKVIIF 274 (311)
Q Consensus 206 ~~~~~~~~~~-----~~~n-~~~~~~G~~t~a~Ei~~Ql~~---~pD~vv~pvG~Gg~~~Gi~~~lk~~~--p~~~iigV 274 (311)
++. +++|++ +|+| +.++.+||+|+++||++|+++ .||+||+|+|+||+++|++++|++++ +.+|||+|
T Consensus 184 ~~~-g~~~v~~~~~~~~~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vvvpvG~GG~~aGi~~~~k~~~~~~~~kii~V 262 (399)
T PRK08206 184 QEN-GWVVVQDTAWEGYEEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFVVV 262 (399)
T ss_pred HHc-CCEEecCccccCcccccHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCccHHHHHHHHHHHHHcCCCCCEEEEE
Confidence 875 788886 6765 455446999999999999976 59999999999999999999999984 47899999
Q ss_pred eCCCCchhhhcC----C----CCCccccccccCCcccc
Q 021570 275 VLFISKPYLACV----P----YPPPSLCLTCQSESVLK 304 (311)
Q Consensus 275 e~~~s~~~~~~~----~----~~~~tiadgl~~~~~~~ 304 (311)
||++++++.+++ + ..++|+|+|++++.+..
T Consensus 263 ep~gs~~l~~s~~~g~~~~~~~~~~tia~gl~~~~~~~ 300 (399)
T PRK08206 263 EPDQADCLYQSAVDGKPVAVTGDMDTIMAGLACGEPNP 300 (399)
T ss_pred CCCCCchHHHHHHcCCcEEeCCCCCceeccCCCCCcCH
Confidence 999999987652 1 23479999999887654
No 57
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=100.00 E-value=3.1e-46 Score=343.56 Aligned_cols=227 Identities=63% Similarity=0.935 Sum_probs=207.1
Q ss_pred chhhhcccccCCCceeecccccccCCCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHHHH
Q 021570 73 NIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLA 152 (311)
Q Consensus 73 ~~~~~i~~~~g~TPL~~~~~l~~~~g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA 152 (311)
.....+...+|+|||+.+++......++||+|+|.+||+||.|||.++.||.+|+.+|.++||++++++++|||+|.++|
T Consensus 41 ~~~~~~~~liG~TPlv~ln~i~~g~~~~i~~K~E~~~p~~SvKdRia~sMi~~Ae~~G~i~pg~stliEpTSGNtGigLA 120 (362)
T KOG1252|consen 41 LILWDVRDLIGNTPLVKLNKIAGGCVARIAAKLEYMNPGGSVKDRIAWSMIEDAEKKGLITPGKSTLIEPTSGNTGIGLA 120 (362)
T ss_pred hhhhhHHHHhCCCceEEeccccCCccceEEEEeeecCCcccHHHHHHHHHHHHHHHcCCccCCceEEEecCCCchHHHHH
Confidence 34566889999999999999977778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHH---HHHHHHHHHHhCCCceeeCCCCCCcchHhhHHH
Q 021570 153 FIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKG---AVQKAEEILNSTPNAYMLQQFDNPANPKIHYET 229 (311)
Q Consensus 153 ~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~---a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~t 229 (311)
++|+..|++|+++||++++.+|+..|++|||+|++++...+++. ++..+.++..+.++.|.++||.||.|+..||.|
T Consensus 121 ~~~a~~Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii~tp~a~~~~~~e~ai~~a~~l~~~~pna~~l~Qf~np~Np~~hy~t 200 (362)
T KOG1252|consen 121 YMAALRGYKCIITMPEKMSKEKRILLRALGAEIILTPPAAGMKGPESAIGKAEELLNKTPNAYILDQFHNPGNPLAHYET 200 (362)
T ss_pred HHHHHcCceEEEEechhhhHHHHHHHHHcCCEEEecChHHccCChHHHHHHHHHHHHhCCChHHHHHhcCCCCccccccc
Confidence 99999999999999999999999999999999999998877777 999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCCchhhhcCCCCC--ccccccccCCc
Q 021570 230 TGPEIWEDTRGKVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFISKPYLACVPYPP--PSLCLTCQSES 301 (311)
Q Consensus 230 ~a~Ei~~Ql~~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s~~~~~~~~~~~--~tiadgl~~~~ 301 (311)
++.||++|+.++||.+|.++|||||++|+++++|+.+|+++|++|||.+|. ++.+....+ +-| .||..+.
T Consensus 201 tg~EI~~q~~g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~-~~~~~~~g~~~~~I-~GIGyg~ 272 (362)
T KOG1252|consen 201 TGPEIWRQLDGKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESI-VLSGGKPGPTFHKI-QGIGYGF 272 (362)
T ss_pred ccHHHHHHhcCCCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCcce-eccCCCCCCCccce-eccccCc
Confidence 999999999889999999999999999999999999999999999999984 444433222 444 3555543
No 58
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=100.00 E-value=8.1e-45 Score=353.23 Aligned_cols=266 Identities=21% Similarity=0.225 Sum_probs=208.6
Q ss_pred CCCCcccccCCCCCccccccCcCccchHHHhhcccccccccCCCcccccccCCCCCCCccccchhhhcccccCCCceeec
Q 021570 11 PLTAPLCISKKSSLATLKLGYISPITAARRLKQNLYKVSYKPCNSVVCKAVSVKPQTGIEGLNIAEDVTQLIGKTPMVYL 90 (311)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wRy~~llP~~~~~~~~~~~~~~i~~~~g~TPL~~~ 90 (311)
||..|+=++ +..+.++..+.+.++.+.++|++ +.|||.++... +.+.+.+..++|||+++
T Consensus 15 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~e~--------~~~r~~~~~~~---------v~~~~~l~g~pTPL~r~ 74 (419)
T TIGR01415 15 PLPPPLDPE---GEEPIAIEKLKRIFPEKLLEQEV--------SGERWIKIPGE---------VLKRYAQIGRPTPLIRA 74 (419)
T ss_pred CCCCCCCCC---CCCcCCHHHHhhhCcHHHHhccc--------cHhhHHhhHHH---------HHHHHHhcCCCCCeEEc
Confidence 444444442 33444566777778888777764 67888877411 34445555568999999
Q ss_pred ccccccCC--CeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEE-eeCcChHHHHHHHHHHHcCCeEEEEEC
Q 021570 91 NTIVKGCV--ANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILV-EPTSGNTGIGLAFIAASKGYKLILTMP 167 (311)
Q Consensus 91 ~~l~~~~g--~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv-~aSsGN~g~AlA~~aa~~Gi~~~vv~p 167 (311)
++|++.+| .+||+|+|++|||||||||++.+++.+++++|. +.++ ++|+||||+|+|++|+.+|++|+||||
T Consensus 75 ~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~~~~a~~~G~-----~~~vtetssGN~G~alA~aaa~~Gl~~~V~mp 149 (419)
T TIGR01415 75 KGLEELLGTPARIYYKYESVSPTGSHKINTAIAQAYYAKIEGA-----KRLVTETGAGQWGSALSLAGALFGLECKVFMV 149 (419)
T ss_pred cchhhhhCCCceEEEEECCCCCCCCcHHHHHHHHHHHHHHcCC-----CeEEEecCchHHHHHHHHHHHHcCCcEEEEEe
Confidence 99998887 699999999999999999999999999999996 3455 568999999999999999999999999
Q ss_pred CC---CCHHHHHHHHhcCCEEEEECCCCChHH------------------HHHHHHHHHHhCCCc-eeeCCCCCCcchHh
Q 021570 168 AS---MSLERRVLLKAFGAELVLTDSAKGMKG------------------AVQKAEEILNSTPNA-YMLQQFDNPANPKI 225 (311)
Q Consensus 168 ~~---~~~~k~~~l~~~GA~V~~v~~~~~~~~------------------a~~~a~~~~~~~~~~-~~~~~~~n~~~~~~ 225 (311)
+. .++.|+.+|+.|||+|+.++.+ +++ +++.|.+.++++++. |+.+++.| ... .
T Consensus 150 ~~s~~~k~~k~~~m~~~GA~Vi~~~~~--~~~~~r~~~~~~p~~~gsl~~ai~~a~e~a~~~~~~~y~~~~~~n-~~~-~ 225 (419)
T TIGR01415 150 RVSFNQKPYRKYLMELYGAEVIPSPSE--FTEFGREVLKEDPDHPGSLGIAISEAIEYALSDEDTKYSLGSVLN-HVL-L 225 (419)
T ss_pred CCCcccCHHHHHHHHHcCCEEEEECCc--hhhHHHHhhhcccccccchHHHHHHHHHHHHhCCCCEEEeCCCCc-HHH-H
Confidence 84 3678999999999999999976 333 366777777665434 55555555 344 5
Q ss_pred hHHHHHHHHHHHcCC---CCCEEEEccChhhHHHHHHHHHHhc----CCCCEEEEEeCCCCchhhhcC------------
Q 021570 226 HYETTGPEIWEDTRG---KVDIFIGGIGTGGTISGAGRYLKEK----NPNIKVIIFVLFISKPYLACV------------ 286 (311)
Q Consensus 226 G~~t~a~Ei~~Ql~~---~pD~vv~pvG~Gg~~~Gi~~~lk~~----~p~~~iigVe~~~s~~~~~~~------------ 286 (311)
||+++|+||++|+++ .||+||+|+|+||+++|++.+|++. .+++|||+|||++|+++.++.
T Consensus 226 h~~~ig~Ei~~Ql~~~g~~pD~vv~~vG~Gg~~~Gi~~~f~~~~l~g~~~~rviaVep~~~~~l~~g~~~yd~~~~~~~~ 305 (419)
T TIGR01415 226 HQTVIGLEAKKQMEEAGEDPDVIIGCVGGGSNFAGLAFPFVADKLSGKIDRRFIAAEPKACPTLTRGEYRYDFGDTAGLT 305 (419)
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEEeCchHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCChhhhcCcccccccccccCC
Confidence 999999999999964 4999999999999999999998432 258999999999999998763
Q ss_pred C-----------CCCccccccccCCccccc
Q 021570 287 P-----------YPPPSLCLTCQSESVLKL 305 (311)
Q Consensus 287 ~-----------~~~~tiadgl~~~~~~~~ 305 (311)
+ ..+.++|+||++..++.+
T Consensus 306 p~~~~~~lG~~~~p~~~~a~gl~~~~~~~~ 335 (419)
T TIGR01415 306 PLLKMYTLGHDFIPPPIHAGGLRYHGVAPT 335 (419)
T ss_pred cceeeeecCCCCCCcceeccccccCCccHH
Confidence 1 145788999998776643
No 59
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=100.00 E-value=6.7e-45 Score=349.90 Aligned_cols=226 Identities=19% Similarity=0.162 Sum_probs=192.3
Q ss_pred hhhhcccccCCCceeecccccccCCC-eEEEeeCCCCC-CCchhhHHHHHHHHHHHHc----------------CCCC--
Q 021570 74 IAEDVTQLIGKTPMVYLNTIVKGCVA-NIAAKLEIMEP-CCSVKDRIGFSMIADAEQK----------------GLIT-- 133 (311)
Q Consensus 74 ~~~~i~~~~g~TPL~~~~~l~~~~g~-~l~vK~E~~nP-tGS~KdRga~~~v~~A~~~----------------G~~~-- 133 (311)
.+.++... .+|||+++++|++.+|. +||+|+|++|+ |||||+||+.+.+.++.++ +.+.
T Consensus 13 ~~~~~~~~-~~TPL~~~~~l~~~~g~~~v~~K~E~~~~~tgSFK~RG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (376)
T TIGR01747 13 FHKKIPGY-RPTPLCALDHLANLLGLKKILVKDESKRFGLNAFKMLGGSYAIAQYLAEKLHLDIETLSFEHLKNDAIGEK 91 (376)
T ss_pred HHHhCCCC-CCCCCcchHHHHHHhCCCcEEEeeCCCCCCCCChHHHHHHHHHHHHHHHHhCCCcccCCHHHHhhhHHHhh
Confidence 34445444 78999999999999995 99999999985 8999999999999987653 1211
Q ss_pred CCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCcee
Q 021570 134 PGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYM 213 (311)
Q Consensus 134 ~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~ 213 (311)
.+..+|+++|+||||+|+|++|+.+|++|+||||+++++.|+.+++.|||+|+.++++ ++++.+.+.+++++. ++++
T Consensus 92 ~~~~~vv~aSsGN~g~a~A~~Aa~~G~~~~I~vP~~~~~~k~~~i~~~GAeVi~v~~~--~~~a~~~a~~~~~~~-g~~~ 168 (376)
T TIGR01747 92 MGQATFATATDGNHGRGVAWAAQQLGQKAVVYMPKGSAQERVENILNLGAECTITDMN--YDDTVRLAMQMAQQH-GWVV 168 (376)
T ss_pred cCCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECCC--HHHHHHHHHHHHHhc-CcEE
Confidence 1236899999999999999999999999999999999999999999999999999976 899999999988775 6788
Q ss_pred eC-----CCCC--CcchHhhHHHHHHHHHHHcCC----CCCEEEEccChhhHHHHHHHHHHhcC-C-CCEEEEEeCCCCc
Q 021570 214 LQ-----QFDN--PANPKIHYETTGPEIWEDTRG----KVDIFIGGIGTGGTISGAGRYLKEKN-P-NIKVIIFVLFISK 280 (311)
Q Consensus 214 ~~-----~~~n--~~~~~~G~~t~a~Ei~~Ql~~----~pD~vv~pvG~Gg~~~Gi~~~lk~~~-p-~~~iigVe~~~s~ 280 (311)
++ +|+| |+.+ +||+|+++||++|+++ .||+||+|+|+||+++|++.+|++.. + .++||+|||++++
T Consensus 169 ~~~~~~~~~~~~~~~ii-~G~~Tia~Ei~eQl~~~~~~~pD~vvvpvG~GGl~~Gi~~~~~~~~~~~~p~vi~Vep~ga~ 247 (376)
T TIGR01747 169 VQDTAWEGYEKIPTWIM-QGYATLADEAVEQLREMGSVTPTHVLLQAGVGSMAGGVLGYFVDVYSENNPHSIVVEPDKAD 247 (376)
T ss_pred eccccccccccCCchHH-HHHHHHHHHHHHHhhccCCCCCCEEEECCchhHHHHHHHHHHHHhcCCCCCEEEEEeeCCCC
Confidence 76 4655 6666 5999999999999963 69999999999999999999998764 3 3699999999999
Q ss_pred hhhhcCC---------C-CCccccccccCCcccc
Q 021570 281 PYLACVP---------Y-PPPSLCLTCQSESVLK 304 (311)
Q Consensus 281 ~~~~~~~---------~-~~~tiadgl~~~~~~~ 304 (311)
++.+++. + .++||||||+++.++.
T Consensus 248 ~~~~s~~~~~g~~~~~~~~~~Tiadgl~~~~~~~ 281 (376)
T TIGR01747 248 CLYQSAVKKDGDIVNVGGDMATIMAGLACGEPNP 281 (376)
T ss_pred HHHHHHHhcCCCeEEcCCCccccccccccCCcch
Confidence 9987621 2 3579999999998754
No 60
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-45 Score=323.21 Aligned_cols=232 Identities=16% Similarity=0.252 Sum_probs=210.7
Q ss_pred CccccchhhhcccccCCCceeecccccccCCCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChH
Q 021570 68 GIEGLNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNT 147 (311)
Q Consensus 68 ~~~~~~~~~~i~~~~g~TPL~~~~~l~~~~g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~ 147 (311)
+.+...++.++...+..||.+.++.+.+..|.+||+|+|++|-+||||.|||.+.+..+.++.. .+.|++.|||||
T Consensus 9 ~~dv~~A~~rik~~ihkTpVlTS~~ln~~~g~~vfFKcE~fQKtGaFKfRGAlNav~~l~~ek~----~kgvithSSGNH 84 (323)
T KOG1251|consen 9 YEDVRAAHQRIKPFIHKTPVLTSENLNEKVGRHVFFKCENFQKTGAFKFRGALNAVSSLKAEKR----AKGVITHSSGNH 84 (323)
T ss_pred HHHHHHHHHHHHhhhccCceechhhHHHHhhhheEeehhhhhhccceehhhhHHHHHHhhHhhh----cCceEeecCCcH
Confidence 4455678889999999999999999999999999999999999999999999999998874433 366999999999
Q ss_pred HHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCCCCCCcchHhhH
Q 021570 148 GIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHY 227 (311)
Q Consensus 148 g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~ 227 (311)
|+|+|++|+..|++++|+||+++|..|+..++.|||+|++++.. .+++.+.+.++.++. +.+.+++|++|..+ +||
T Consensus 85 aqAlalaAk~~giPa~IVvP~~AP~~Kv~a~~~Yga~ii~~e~~--~~sRE~va~~ltee~-g~~~i~Py~~p~vI-aGq 160 (323)
T KOG1251|consen 85 AQALALAAKILGIPATIVVPKDAPICKVAATRGYGANIIFCEPT--VESRESVAKDLTEET-GYYLIHPYNHPSVI-AGQ 160 (323)
T ss_pred HHHHHHHHHhcCCCeEEEecCCChHHHHHHHHhcCceEEEecCc--cchHHHHHHHHHHhc-CcEEeCCCCCccee-ecc
Confidence 99999999999999999999999999999999999999999987 567888889998876 88999999999999 599
Q ss_pred HHHHHHHHHHcCCCCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCCchhhhcC-------CCCCccccccccCC
Q 021570 228 ETTGPEIWEDTRGKVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFISKPYLACV-------PYPPPSLCLTCQSE 300 (311)
Q Consensus 228 ~t~a~Ei~~Ql~~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s~~~~~~~-------~~~~~tiadgl~~~ 300 (311)
+|+++|++||.+ .+|++|+|+|+||+++|++.+.+.+.|+++|++|||++++.-.+++ ...++|||||.++.
T Consensus 161 gTiA~ElleqVg-~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy~veP~~a~d~~qsf~~g~I~~l~tp~TIADG~r~~ 239 (323)
T KOG1251|consen 161 GTIALELLEQVG-EIDALFVPVGGGGLLSGVALAAKSLKPSIEVYAVEPEAADDGQQSFLKGKIVHLDTPKTIADGVRTS 239 (323)
T ss_pred chHHHHHHHhhC-ccceEEEeecCcchhhHHHHHHhccCCCcEEEEecCcccchHHHHHhcCCeEecCCchhhhhhhhhc
Confidence 999999999997 7999999999999999999999999999999999999988776663 26799999999999
Q ss_pred ccccccccc
Q 021570 301 SVLKLVAWT 309 (311)
Q Consensus 301 ~~~~~~~~~ 309 (311)
++ ....|+
T Consensus 240 ~l-G~~t~p 247 (323)
T KOG1251|consen 240 HL-GPLTWP 247 (323)
T ss_pred cc-cccchH
Confidence 85 566665
No 61
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=100.00 E-value=1.6e-43 Score=342.51 Aligned_cols=220 Identities=20% Similarity=0.143 Sum_probs=186.7
Q ss_pred ccCCCceeecccccccCC-CeEEEeeCCCCC-CCchhhHHHHHHHHHHH--HcCCC--------------C--CCCceEE
Q 021570 81 LIGKTPMVYLNTIVKGCV-ANIAAKLEIMEP-CCSVKDRIGFSMIADAE--QKGLI--------------T--PGKSILV 140 (311)
Q Consensus 81 ~~g~TPL~~~~~l~~~~g-~~l~vK~E~~nP-tGS~KdRga~~~v~~A~--~~G~~--------------~--~g~~~vv 140 (311)
...+|||+++++|++.+| .+||+|+|++|+ |||||+||+.+.+..+. +.|.. . ....+||
T Consensus 38 ~~~~TPL~~~~~L~~~~g~~~v~lK~E~~q~~tGSFK~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~vv 117 (396)
T TIGR03528 38 GYQPTPLAELDNLAKHLGVGSILVKDESYRFGLNAFKVLGGSYAIGKYLAEKLGKDISELSFEKLKSNEIREKLGDITFV 117 (396)
T ss_pred CCcCCCCcchHHHHHHhCCCcEEEeeCCCCCCcCChHHHHHHHHHHHHHHHHhCCCcccccHHHhhhHHHHhhccCcEEE
Confidence 447899999999999999 599999999884 99999999999999863 33311 0 0113799
Q ss_pred eeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeC-----
Q 021570 141 EPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQ----- 215 (311)
Q Consensus 141 ~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~----- 215 (311)
++|+||||+|+|++|+.+|++|+||||+++++.|+.+++.|||+|+.++++ ++++.+.+++++++. +++|++
T Consensus 118 ~aSsGN~g~alA~~aa~~Gi~~~IvvP~~~~~~K~~~ir~~GAeVi~~~~~--~~~a~~~a~~~a~~~-g~~~v~~~~~~ 194 (396)
T TIGR03528 118 TATDGNHGRGVAWAANQLGQKSVVYMPKGSAQIRLENIRAEGAECTITDLN--YDDAVRLAWKMAQEN-GWVMVQDTAWE 194 (396)
T ss_pred EECccHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHhcCCEEEEECCC--HHHHHHHHHHHHHhc-CcEeecccccc
Confidence 999999999999999999999999999999999999999999999999976 899999999998875 778885
Q ss_pred CCCC--CcchHhhHHHHHHHHHHHcC----CCCCEEEEccChhhHHHHHHHHHHhc-CCC-CEEEEEeCCCCchhhhcCC
Q 021570 216 QFDN--PANPKIHYETTGPEIWEDTR----GKVDIFIGGIGTGGTISGAGRYLKEK-NPN-IKVIIFVLFISKPYLACVP 287 (311)
Q Consensus 216 ~~~n--~~~~~~G~~t~a~Ei~~Ql~----~~pD~vv~pvG~Gg~~~Gi~~~lk~~-~p~-~~iigVe~~~s~~~~~~~~ 287 (311)
+|+| ++.+ +||+|+++||++|++ ..||+||+|+|+||+++|++.+|++. .+. ++||+|||++++++.+++.
T Consensus 195 ~~~~~~~~~i-~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p~vi~Vep~~a~~l~~s~~ 273 (396)
T TIGR03528 195 GYEKIPTWIM-QGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAYGEERPITVIVEPDAADCLYRSAI 273 (396)
T ss_pred ccccCchHHH-HHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHHHHhcCCCCCEEEEEccCCCchHHHHHH
Confidence 5765 4445 599999999999996 26999999999999999999999654 343 4999999999999987521
Q ss_pred ---------C-CCccccccccCCcccc
Q 021570 288 ---------Y-PPPSLCLTCQSESVLK 304 (311)
Q Consensus 288 ---------~-~~~tiadgl~~~~~~~ 304 (311)
+ ..+|+|||++++.+..
T Consensus 274 ~~~g~~~~~~g~~~Tiadgl~~~~p~~ 300 (396)
T TIGR03528 274 ADDGKPHFVTGDMATIMAGLACGEPNT 300 (396)
T ss_pred hcCCCEEEeCCCccceecccccCCccH
Confidence 2 5679999999987654
No 62
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=100.00 E-value=4.7e-43 Score=341.42 Aligned_cols=248 Identities=20% Similarity=0.214 Sum_probs=197.0
Q ss_pred CCCCcccccCCCCCccccccCcCccchHHHhhcccccccccCCCcccccccCCCCCCCccccchhhhcccccCCCceeec
Q 021570 11 PLTAPLCISKKSSLATLKLGYISPITAARRLKQNLYKVSYKPCNSVVCKAVSVKPQTGIEGLNIAEDVTQLIGKTPMVYL 90 (311)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wRy~~llP~~~~~~~~~~~~~~i~~~~g~TPL~~~ 90 (311)
||..||=+. +.++.++..+.|+++.+.++|+++ .||| +|.|+ ++ ..+....++|||+++
T Consensus 25 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~---~~i~~------~v-~~~~~~~~~TPL~~~ 83 (427)
T PRK12391 25 PLPPPLDPG---TGEPVTPEDLAPIFPMELIEQEVS--------TERY---IDIPE------EV-REIYRLWRPTPLIRA 83 (427)
T ss_pred CCCCCCCCC---CCCCCCHHHhhhcChHHHhhccCC--------cccc---cCChH------HH-HHHHcccCCCCeeEc
Confidence 444555443 455566788889999998888764 4555 24321 12 233456789999999
Q ss_pred ccccccCC--CeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEe-eCcChHHHHHHHHHHHcCCeEEEEEC
Q 021570 91 NTIVKGCV--ANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVE-PTSGNTGIGLAFIAASKGYKLILTMP 167 (311)
Q Consensus 91 ~~l~~~~g--~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~-aSsGN~g~AlA~~aa~~Gi~~~vv~p 167 (311)
++|++.+| .+||+|+|++|||||||||++..++.+++++|. +.+++ +|+||||+|+|++|+.+|++|+||||
T Consensus 84 ~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~a~~a~~~G~-----~~~vtetgsGN~G~alA~aaa~~Gl~~~V~mp 158 (427)
T PRK12391 84 RRLEKALGTPAKIYYKYEGVSPTGSHKPNTAVAQAYYNKKEGI-----KRLTTETGAGQWGSALALACALFGLECTVFMV 158 (427)
T ss_pred hhhHhhhCCCceEEEEEcCCCCCCChHHHHHHHHHHHHHHCCC-----CEEEEccCchHHHHHHHHHHHHcCCcEEEEEe
Confidence 99998887 699999999999999999999999999999996 34554 67999999999999999999999999
Q ss_pred CC---CCHHHHHHHHhcCCEEEEECCCCC----------------hHHHHHHHHHHHHhCCCceeeCCCCCCcchHhhHH
Q 021570 168 AS---MSLERRVLLKAFGAELVLTDSAKG----------------MKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYE 228 (311)
Q Consensus 168 ~~---~~~~k~~~l~~~GA~V~~v~~~~~----------------~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~ 228 (311)
+. .++.|+.+|+.|||+|+.++++.+ ...++++|.+.+.+.++.+|+.++++...+ .||.
T Consensus 159 ~~s~~~k~~r~~~mr~~GA~Vi~~~~~~~~~~~~~~~~~~~~~gsl~~ai~~A~e~a~~~~~~~y~~~s~~~~~~-~~~~ 237 (427)
T PRK12391 159 RVSYEQKPYRRSLMETYGAEVIPSPSDLTEAGRKILAEDPDHPGSLGIAISEAVEDAAKRPDTKYALGSVLNHVL-LHQT 237 (427)
T ss_pred cCCcccCHHHHHHHHHCCCEEEEECCchhhhhhhhhhcCccccccHHHHHHHHHHHHHhCCCcEEEcCCCCcHHH-hhHH
Confidence 74 477899999999999999987521 112577788877765565666555444444 5999
Q ss_pred HHHHHHHHHcC---CCCCEEEEccChhhHHHHHHHHHHh---cC-CCCEEEEEeCCCCchhhhc
Q 021570 229 TTGPEIWEDTR---GKVDIFIGGIGTGGTISGAGRYLKE---KN-PNIKVIIFVLFISKPYLAC 285 (311)
Q Consensus 229 t~a~Ei~~Ql~---~~pD~vv~pvG~Gg~~~Gi~~~lk~---~~-p~~~iigVe~~~s~~~~~~ 285 (311)
++|+||++|++ ..||+||+|+|+||+++|++.+|.+ .. +++|||+|||++|+++.++
T Consensus 238 ~ig~Ei~~Ql~~~g~~pD~Vv~~vG~Gg~~aGi~~~f~~~~~~g~~~~riiaVEp~~~~~l~~g 301 (427)
T PRK12391 238 VIGLEAKKQLELAGEYPDVVIGCVGGGSNFAGLAFPFLGDKLEGKKDTRFIAVEPAACPTLTKG 301 (427)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHHHhcCCCCceEEEEeeccchhhccc
Confidence 99999999996 3699999999999999999997743 34 8899999999999999875
No 63
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=100.00 E-value=7.4e-43 Score=317.27 Aligned_cols=187 Identities=42% Similarity=0.583 Sum_probs=177.2
Q ss_pred CceeecccccccCCCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEE
Q 021570 85 TPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLIL 164 (311)
Q Consensus 85 TPL~~~~~l~~~~g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~v 164 (311)
|||++++++++..+.+||+|+|++|||||||||++.+++..+++.|.+ ++ .+|+++|+||+|.|+|++|+.+|++|+|
T Consensus 1 TPl~~~~~l~~~~~~~l~~K~e~~~ptgS~K~R~a~~~l~~a~~~g~~-~~-~~vv~~ssGN~g~alA~~a~~~g~~~~v 78 (244)
T cd00640 1 TPLVRLKRLSKLGGANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKL-PK-GVIIESTGGNTGIALAAAAARLGLKCTI 78 (244)
T ss_pred CCeeEccccccccCCEEEEEecccCCcCCcHHHHHHHHHHHHHHcCCC-CC-CEEEEeCCcHHHHHHHHHHHHcCCCEEE
Confidence 899999999887778999999999999999999999999999999965 33 6899999999999999999999999999
Q ss_pred EECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCCCCCCcchHhhHHHHHHHHHHHcCC-CCC
Q 021570 165 TMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEIWEDTRG-KVD 243 (311)
Q Consensus 165 v~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~t~a~Ei~~Ql~~-~pD 243 (311)
|+|.+.++.|+++++.+||+|+.++++ ++++.+.+++++++.++++|+++|+|+.+++ |+.++++||++|+++ .||
T Consensus 79 ~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~-g~~~~~~Ei~~q~~~~~~d 155 (244)
T cd00640 79 VMPEGASPEKVAQMRALGAEVVLVPGD--FDDAIALAKELAEEDPGAYYVNQFDNPANIA-GQGTIGLEILEQLGGQKPD 155 (244)
T ss_pred EECCCCCHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHhCCCCEecCCCCCHHHHH-HHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999987 8899999999998866899999999999996 889999999999987 599
Q ss_pred EEEEccChhhHHHHHHHHHHhcCCCCEEEEEeC
Q 021570 244 IFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVL 276 (311)
Q Consensus 244 ~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~ 276 (311)
+||+|+|+||+++|++++|++..|.+|||+|||
T Consensus 156 ~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v~~ 188 (244)
T cd00640 156 AVVVPVGGGGNIAGIARALKELLPNVKVIGVEP 188 (244)
T ss_pred EEEEecCccHHHHHHHHHHHHhCCCCEEEEEee
Confidence 999999999999999999999999999999999
No 64
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-42 Score=332.47 Aligned_cols=272 Identities=18% Similarity=0.111 Sum_probs=230.3
Q ss_pred ccccCCCCCccccccCcCccchHHH---hhc----ccccccccC--CCcccccccCCCCCCCccccchhhhcccccCCCc
Q 021570 16 LCISKKSSLATLKLGYISPITAARR---LKQ----NLYKVSYKP--CNSVVCKAVSVKPQTGIEGLNIAEDVTQLIGKTP 86 (311)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~--~~~wRy~~llP~~~~~~~~~~~~~~i~~~~g~TP 86 (311)
-|..|..++.--.+.+++|++.--. +.. .+.+..... ...|||.++||.. ....+.+.+|.||
T Consensus 7 rc~~cg~~f~~a~~~~~c~~cGl~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~--------~~~~~~l~eg~tp 78 (411)
T COG0498 7 RCLKCGREFSQALLQGLCPDCGLFLPAEYPYFSLEEIDKLLGLSYPELAWRYLELLPVG--------EIPAVSLGEGGTP 78 (411)
T ss_pred ecCCCCcchhhHHhhCcCCcCCcccccccCccchhhhhhhhcccccchHHHHHHHCCCC--------CcchhhhhhccCc
Confidence 4777777776456677777643311 111 111211111 3789999999961 1234688999999
Q ss_pred eeecccccccCCC---eEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEE
Q 021570 87 MVYLNTIVKGCVA---NIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLI 163 (311)
Q Consensus 87 L~~~~~l~~~~g~---~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~ 163 (311)
+++.+++...++. ++|+|.|++|||||||||++..++..+.+.|. .+|+++||||+|.|+|+++++.|++|.
T Consensus 79 ~~~~~~~~~~l~~~~~~lyvk~~~~nPT~SFKDrg~~~~~~~~~~~g~-----~~I~~ASSGnTgAs~aaya~rag~~v~ 153 (411)
T COG0498 79 LYKAPALAAPLGVLNDNLYVKELGHNPTGSFKDRGMTVLVSLAKELGA-----KTILCASSGNTGASAAAYAARAGLKVF 153 (411)
T ss_pred cccCcccchhhccCCcceehhhhccCCCcchhhhhHHHHHHHHHHhcC-----CEEEEeCCchHHHHHHHHhccCCCeEE
Confidence 9999888888874 59999999999999999999999999999994 469999999999999999999999999
Q ss_pred EEECCC-CCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCCCCCCcchHhhHHHHHHHHHHHcCC-C
Q 021570 164 LTMPAS-MSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEIWEDTRG-K 241 (311)
Q Consensus 164 vv~p~~-~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~t~a~Ei~~Ql~~-~ 241 (311)
|++|++ ++..|+.||..+|++++.++++ ||++++.+++++++. ++++....-||.+++ ||+|+++||++|+++ .
T Consensus 154 Vl~P~g~vs~~k~~q~~~~ga~~i~v~G~--fDda~~~vk~~~~~~-~~~~~~nsiNp~rle-gq~t~~fe~~~ql~~~~ 229 (411)
T COG0498 154 VLYPKGKVSPGKLAQMLTLGAHVIAVDGN--FDDAQELVKEAANRE-GLLSAVNSINPYRLE-GQKTYAFEIAEQLGWKA 229 (411)
T ss_pred EEecCCCCCHHHHHHHHhcCCEEEEEcCc--HHHHHHHHHHHHhhC-CceeeccccCHHHhh-hhhhhHhHHHHHhCCCC
Confidence 999998 9999999999999999999999 999999999999865 568888889999996 999999999999985 6
Q ss_pred CCEEEEccChhhHHHHHHHHHHhcCC------CCEEEEEeCCCCchhhhcCCC---CCccccccccCCcccc
Q 021570 242 VDIFIGGIGTGGTISGAGRYLKEKNP------NIKVIIFVLFISKPYLACVPY---PPPSLCLTCQSESVLK 304 (311)
Q Consensus 242 pD~vv~pvG~Gg~~~Gi~~~lk~~~p------~~~iigVe~~~s~~~~~~~~~---~~~tiadgl~~~~~~~ 304 (311)
||+|++|+|+||++.|+++||++..| -+++.+||++++.|+...+.. .+.|+|++|.++.++.
T Consensus 230 p~~v~vPvGn~gni~a~~~g~~~~~~~g~i~~~p~~~~vqaeg~~p~~~~~~~~~~~~~T~a~am~I~~p~n 301 (411)
T COG0498 230 PDHVVVPVGNGGNLLAIYKGFKEGLPIGKIDKAPNMNGVQAEGFSPGVYAWKEGRETPETIAPAMDIGNPSN 301 (411)
T ss_pred CCeEEEeCCchHHHHHHHHHHHhcccccchhcCchhhhhhHhhccchhhhcccccccccccccccccCCCCC
Confidence 99999999999999999999998653 358999999999999998764 8999999999998864
No 65
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=1.9e-41 Score=327.40 Aligned_cols=225 Identities=19% Similarity=0.132 Sum_probs=183.9
Q ss_pred hhcccccC-CCceeecccccccC-CCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHHHHH
Q 021570 76 EDVTQLIG-KTPMVYLNTIVKGC-VANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAF 153 (311)
Q Consensus 76 ~~i~~~~g-~TPL~~~~~l~~~~-g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA~ 153 (311)
.....++| +|||+++++|++.+ |.+||+|+|++|||||||+|.+..++..|++.|. +..|+++|+||||+|+|+
T Consensus 53 ~~~~~~~g~pTPL~~~~~Ls~~~Gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~G~----~~vI~etgsGnhG~A~A~ 128 (402)
T PRK13028 53 YLLKHYVGRPTPLYHAKRLSEELGGAQIYLKREDLNHTGAHKINNCLGQALLAKRMGK----KRLIAETGAGQHGVATAT 128 (402)
T ss_pred HHHHHhCCCCCCeeehHHhHhhcCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHcCC----CeEEEecCcHHHHHHHHH
Confidence 33456666 79999999999988 5799999999999999999999999999999995 345667999999999999
Q ss_pred HHHHcCCeEEEEECCCCCH---HHHHHHHhcCCEEEEECC-CCChHHHHHHHHH-HHHhCCCceeeCCC-----CCCcch
Q 021570 154 IAASKGYKLILTMPASMSL---ERRVLLKAFGAELVLTDS-AKGMKGAVQKAEE-ILNSTPNAYMLQQF-----DNPANP 223 (311)
Q Consensus 154 ~aa~~Gi~~~vv~p~~~~~---~k~~~l~~~GA~V~~v~~-~~~~~~a~~~a~~-~~~~~~~~~~~~~~-----~n~~~~ 223 (311)
+|+++|++|+||||+...+ .|+.+|+.+||+|+.++. ..+++++++.+.+ .+++.++.+|+.+. ..|.++
T Consensus 129 aaa~~Gl~~~I~m~~~d~~~q~~nv~~mr~~GAeVi~v~~g~~~~~~a~~~a~~~~~~~~~~~~y~~~s~~gp~p~p~~v 208 (402)
T PRK13028 129 AAALFGLECEIYMGEVDIERQHPNVFRMKLLGAEVVPVTRGGRTLKEAVDSAFEDYLKDPDNTHYAIGSVVGPHPFPMMV 208 (402)
T ss_pred HHHHcCCCEEEEECCCcchhhHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHhcCCcEEEecCcCCCCCcHHHH
Confidence 9999999999999986433 567899999999999985 3358899888865 45543456666432 124455
Q ss_pred HhhHHHHHHHHHHHcC----CCCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCC--------CchhhhcCC----
Q 021570 224 KIHYETTGPEIWEDTR----GKVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFI--------SKPYLACVP---- 287 (311)
Q Consensus 224 ~~G~~t~a~Ei~~Ql~----~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~--------s~~~~~~~~---- 287 (311)
..||+|+++||.+|+. ..||+||+|+|+||+++|++.+|++. |+++||||||.+ ++++..+.+
T Consensus 209 ~~~q~tig~Ei~~Q~~~~~g~~pD~vV~~VGgGg~~~Gi~~~f~~~-~~v~iigVE~~G~~~~~~~~aa~l~~g~~g~~~ 287 (402)
T PRK13028 209 RDFQSVIGEEAREQFLEMTGRLPDAVVACVGGGSNAIGLFSAFLDD-ESVRLVGVEPAGRGLDLGEHAATLTLGKPGVIH 287 (402)
T ss_pred HHHhHHHHHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHHHhC-CCceEEEEecCCCCcccccccccccCCCcceec
Confidence 5699999999999973 35999999999999999999999874 899999999999 777766532
Q ss_pred --------------CCCccccccccCCccccc
Q 021570 288 --------------YPPPSLCLTCQSESVLKL 305 (311)
Q Consensus 288 --------------~~~~tiadgl~~~~~~~~ 305 (311)
...+||++||.++.+...
T Consensus 288 g~~~~~l~~~~g~~~~~~sia~gl~~~~vgp~ 319 (402)
T PRK13028 288 GFKSYVLQDEDGEPAPVHSIAAGLDYPGVGPE 319 (402)
T ss_pred ccceeeccccCCCcCCccceeccccCCCCCHH
Confidence 235799999998876543
No 66
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=100.00 E-value=2.4e-41 Score=324.80 Aligned_cols=245 Identities=20% Similarity=0.157 Sum_probs=186.2
Q ss_pred HHHhhcccccccccCCCcccccccCCCCCCCccccchhhhccccc-CCCceeecccccccC-CCeEEEeeCCCCCCCchh
Q 021570 38 ARRLKQNLYKVSYKPCNSVVCKAVSVKPQTGIEGLNIAEDVTQLI-GKTPMVYLNTIVKGC-VANIAAKLEIMEPCCSVK 115 (311)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~wRy~~llP~~~~~~~~~~~~~~i~~~~-g~TPL~~~~~l~~~~-g~~l~vK~E~~nPtGS~K 115 (311)
-++++|++..+++..+ .|. +++....... .+|||++++++++.+ +.+||+|+|++|||||||
T Consensus 3 ~~~~~~~~~~~~~~~~--------~~~--------~~~~~~~~~~~~~TPL~~l~~l~~~~g~~~l~~K~E~~nptgS~K 66 (365)
T cd06446 3 LEELEQEFSKERYDPD--------FPE--------ELRELYKDYVGRPTPLYRAKRLSEYLGGAKIYLKREDLNHTGAHK 66 (365)
T ss_pred HHHHHHHHHHhhcCcc--------cHH--------HHHHHhhccCCCCCCceehHHHHHhhCCceEEEEeccCCCccchh
Confidence 4667777766555421 121 1233333333 489999999999888 569999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCC---HHHHHHHHhcCCEEEEECCCC
Q 021570 116 DRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMS---LERRVLLKAFGAELVLTDSAK 192 (311)
Q Consensus 116 dRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~---~~k~~~l~~~GA~V~~v~~~~ 192 (311)
||++..++..|.++|. ...|+++|+||||+|+|++|+.+|++|+||||+..+ +.|+.+++.+||+|+.++...
T Consensus 67 ~R~a~~~~~~a~~~g~----~~vv~~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~~~~GAeV~~~~~~~ 142 (365)
T cd06446 67 INNALGQALLAKRMGK----KRVIAETGAGQHGVATATACALFGLECEIYMGAVDVERQPLNVFRMELLGAEVVPVPSGS 142 (365)
T ss_pred HHHHHHHHHHHHHcCC----CeEEEecCchHHHHHHHHHHHHhCCCeEEEEcCCccccccchHHHHHHCCCEEEEeCCCC
Confidence 9999999999999985 233444799999999999999999999999998643 367889999999999998642
Q ss_pred -ChHHHHHHHHHHHHhC-CC-ceeeCCCC----CCcchHhhHHHHHHHHHHHcCC----CCCEEEEccChhhHHHHHHHH
Q 021570 193 -GMKGAVQKAEEILNST-PN-AYMLQQFD----NPANPKIHYETTGPEIWEDTRG----KVDIFIGGIGTGGTISGAGRY 261 (311)
Q Consensus 193 -~~~~a~~~a~~~~~~~-~~-~~~~~~~~----n~~~~~~G~~t~a~Ei~~Ql~~----~pD~vv~pvG~Gg~~~Gi~~~ 261 (311)
.+++++..+.+...+. ++ .|+++++. ++.++.+||+|+++||++|+++ .||+||+|+|+||+++|++++
T Consensus 143 ~~~~~~~~~a~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ag~~t~~~EI~~Q~~~~~~~~~D~vv~~vG~GGt~~Gi~~g 222 (365)
T cd06446 143 GTLKDAISEAIRDWVTNVEDTHYLLGSVVGPHPYPNMVRDFQSVIGEEAKKQILEKEGELPDVVIACVGGGSNAAGLFYP 222 (365)
T ss_pred CcHHHHHHHHHHHHHhccCCceEecccccCCCCchHHHHHhhhHHHHHHHHHHHHhcCCCCCEEEEecCccHHHHHHHHH
Confidence 3567765555543332 13 44444331 2345567999999999999963 599999999999999999999
Q ss_pred HHhcCCCCEEEEEeCCCCchhhhc--------------------------CCCCCccccccccCCccc
Q 021570 262 LKEKNPNIKVIIFVLFISKPYLAC--------------------------VPYPPPSLCLTCQSESVL 303 (311)
Q Consensus 262 lk~~~p~~~iigVe~~~s~~~~~~--------------------------~~~~~~tiadgl~~~~~~ 303 (311)
+++ .+++|||+|||++++++..+ ....++|+|+||.++.+.
T Consensus 223 ~~~-~~~~~vigVep~gs~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~ 289 (365)
T cd06446 223 FIN-DKDVKLIGVEAGGCGLETGGHAAYLFGGTAGVLHGLKMYTLQDEDGQIVPPHSISAGLDYPGVG 289 (365)
T ss_pred HHh-CCCceEEEEcCCCCccccccceeeccCCCcceecchhhhccccccCCCCCcccccccccCCCCC
Confidence 987 46899999999999887531 012457899999876543
No 67
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=100.00 E-value=4.2e-41 Score=324.53 Aligned_cols=224 Identities=19% Similarity=0.168 Sum_probs=180.4
Q ss_pred hcccccC-CCceeecccccccC-CCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHHHHHH
Q 021570 77 DVTQLIG-KTPMVYLNTIVKGC-VANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFI 154 (311)
Q Consensus 77 ~i~~~~g-~TPL~~~~~l~~~~-g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA~~ 154 (311)
....++| +|||+++++|++.+ |.+||+|+|++|||||||+|++..++..|++.|. ...|+++|+||||+|+|++
T Consensus 50 ~~~~~~grpTPL~~~~~Ls~~~gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~Gk----~~vIaetgaGnhG~A~A~~ 125 (397)
T PRK04346 50 LLKNYVGRPTPLYFAERLSEHLGGAKIYLKREDLNHTGAHKINNVLGQALLAKRMGK----KRIIAETGAGQHGVATATA 125 (397)
T ss_pred HHHHhcCCCCCceEhHHHHHHcCCCeEEEEECCCCCccchHHHHHHHHHHHHHHcCC----CeEEEecCcHHHHHHHHHH
Confidence 3456677 59999999999988 5799999999999999999999999999999995 3456668999999999999
Q ss_pred HHHcCCeEEEEECCC-CC--HHHHHHHHhcCCEEEEECC-CCChHHHHHHHHH-HHHhCCCceee-CCCCC----CcchH
Q 021570 155 AASKGYKLILTMPAS-MS--LERRVLLKAFGAELVLTDS-AKGMKGAVQKAEE-ILNSTPNAYML-QQFDN----PANPK 224 (311)
Q Consensus 155 aa~~Gi~~~vv~p~~-~~--~~k~~~l~~~GA~V~~v~~-~~~~~~a~~~a~~-~~~~~~~~~~~-~~~~n----~~~~~ 224 (311)
|+++|++|+||||+. ++ ..|+.+|+.+||+|+.++. ..+++++++++.+ +.++.++.+|+ .+..+ |.++.
T Consensus 126 aa~~Gl~c~I~mp~~d~~rq~~nv~~m~~lGA~Vv~v~~g~~~l~da~~ea~~~~~~~~~~~~y~~gs~~gphp~p~~v~ 205 (397)
T PRK04346 126 AALLGLECVIYMGAEDVERQALNVFRMKLLGAEVVPVTSGSRTLKDAVNEALRDWVTNVEDTHYLIGSVAGPHPYPTMVR 205 (397)
T ss_pred HHHcCCcEEEEecCCchhhhhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEeCCcCCCCCchHHHH
Confidence 999999999999985 34 3567889999999999985 3357778777765 45443355565 33322 34455
Q ss_pred hhHHHHHHHHHHHcC----CCCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCC--------chhhhcC------
Q 021570 225 IHYETTGPEIWEDTR----GKVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFIS--------KPYLACV------ 286 (311)
Q Consensus 225 ~G~~t~a~Ei~~Ql~----~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s--------~~~~~~~------ 286 (311)
.||+|+|.||.+|+. ..||+||+|+|+||+++|++.+|++ .|++|||||||.++ .++..+.
T Consensus 206 ~~q~tig~Ei~eQ~~~~~g~~pD~vVa~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~~~~~~~~~a~l~~g~~g~~~g 284 (397)
T PRK04346 206 DFQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAGKGLETGKHAATLTKGRPGVLHG 284 (397)
T ss_pred HhcchHHHHHHHHHHHhhCCCCCEEEEecCccHhHHHHHHHHhh-CCCCeEEEEecCCCccccccccchhhcCCeeeecc
Confidence 699999999999984 2599999999999999999999976 78999999999985 3443331
Q ss_pred ------------CCCCccccccccCCccccc
Q 021570 287 ------------PYPPPSLCLTCQSESVLKL 305 (311)
Q Consensus 287 ------------~~~~~tiadgl~~~~~~~~ 305 (311)
...+++|++||..+.+...
T Consensus 285 ~~~~~~~~~~g~~~~~~sis~gL~~pgvgp~ 315 (397)
T PRK04346 285 AKTYLLQDEDGQILETHSISAGLDYPGVGPE 315 (397)
T ss_pred ccceecccCCCccCCCceeeccccCCCCCHH
Confidence 1346899999998877543
No 68
>PLN02618 tryptophan synthase, beta chain
Probab=100.00 E-value=7e-41 Score=323.71 Aligned_cols=227 Identities=18% Similarity=0.202 Sum_probs=180.5
Q ss_pred hhhhcccccC-CCceeecccccccC------CCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcCh
Q 021570 74 IAEDVTQLIG-KTPMVYLNTIVKGC------VANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGN 146 (311)
Q Consensus 74 ~~~~i~~~~g-~TPL~~~~~l~~~~------g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN 146 (311)
....+...+| +|||+++++|++.+ |++||+|+|++|||||||||.+...+..|++.|. +..|+++|+||
T Consensus 55 ~~~~l~~~vGr~TPL~~~~~Ls~~~g~~~~~g~~IylK~E~lnptGS~K~R~a~~~~l~A~~~g~----~~vIaesgaGN 130 (410)
T PLN02618 55 LAGILKDYVGRETPLYFAERLTEHYKRADGEGPEIYLKREDLNHTGAHKINNAVAQALLAKRLGK----KRIIAETGAGQ 130 (410)
T ss_pred HHHHHHHhcCCCCceeEhhhHHHHhccccCCCCEEEEEeCCCCCccchHHHHHHHHHHHHHHcCC----CEEEEEcCcHH
Confidence 3456778887 89999999999877 4799999999999999999999999999999884 24455667999
Q ss_pred HHHHHHHHHHHcCCeEEEEECCCC---CHHHHHHHHhcCCEEEEECC-CCChHHHHHHH-HHHHHhCCCceee-CCCC--
Q 021570 147 TGIGLAFIAASKGYKLILTMPASM---SLERRVLLKAFGAELVLTDS-AKGMKGAVQKA-EEILNSTPNAYML-QQFD-- 218 (311)
Q Consensus 147 ~g~AlA~~aa~~Gi~~~vv~p~~~---~~~k~~~l~~~GA~V~~v~~-~~~~~~a~~~a-~~~~~~~~~~~~~-~~~~-- 218 (311)
||+|+|++|+++|++|+||||+.. ...|+.+|+.|||+|+.++. +.++++++.++ ++++++.++.+|+ .+..
T Consensus 131 hG~AlA~aaa~~Gl~~~I~m~~~~~~~~~~nv~~mr~lGA~Vi~v~~g~~~~~dA~~ea~~~~~~~~~~~~yi~gs~~gp 210 (410)
T PLN02618 131 HGVATATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAEVRPVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGP 210 (410)
T ss_pred HHHHHHHHHHHcCCcEEEEEcCCchhhhhhhHHHHHHCCCEEEEEeCCCCCHHHHHHHHHHHHHhccCCCEEEecCcCCC
Confidence 999999999999999999999853 34567799999999999954 33488888555 4566653455665 2222
Q ss_pred CC--cchHhhHHHHHHHHHHHc----CCCCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCC--------chhhh
Q 021570 219 NP--ANPKIHYETTGPEIWEDT----RGKVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFIS--------KPYLA 284 (311)
Q Consensus 219 n~--~~~~~G~~t~a~Ei~~Ql----~~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s--------~~~~~ 284 (311)
+| ..+..|++++|.||.+|+ +..||+||+|+|+||+++|++++|++ .|++|||||||+++ .++..
T Consensus 211 ~P~~~~v~~~q~tig~Ei~~Q~~~~~g~~pD~VV~~VGgGg~~~Gi~~~f~~-~~~v~ligVEa~G~~~~~~~~~a~l~~ 289 (410)
T PLN02618 211 HPYPMMVRDFHSVIGKETRRQAMEKWGGKPDVLVACVGGGSNAMGLFHEFID-DEDVRLIGVEAAGFGLDSGKHAATLTK 289 (410)
T ss_pred CCCHHHHHHhhHHHHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHHh-CCCceEEEEEeCCCcccccccccchhc
Confidence 22 233359999999998776 33699999999999999999999976 68999999999997 34443
Q ss_pred cC------------------CCCCccccccccCCccccc
Q 021570 285 CV------------------PYPPPSLCLTCQSESVLKL 305 (311)
Q Consensus 285 ~~------------------~~~~~tiadgl~~~~~~~~ 305 (311)
+. ...++||++||.++.+...
T Consensus 290 g~~gv~~g~~~~~l~~~~g~~~~~~sia~gl~~pgvgp~ 328 (410)
T PLN02618 290 GEVGVLHGAMSYLLQDEDGQIIEPHSISAGLDYPGVGPE 328 (410)
T ss_pred CCcceeccccccccccccCCCCCCcchhhhhcCCCCcHH
Confidence 31 1356899999999876544
No 69
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=100.00 E-value=1.1e-40 Score=322.23 Aligned_cols=219 Identities=20% Similarity=0.180 Sum_probs=175.1
Q ss_pred cccC-CCceeecccccccCC-CeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHHHHHHHHH
Q 021570 80 QLIG-KTPMVYLNTIVKGCV-ANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAAS 157 (311)
Q Consensus 80 ~~~g-~TPL~~~~~l~~~~g-~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~ 157 (311)
.+.+ +|||++++++++.+| .+||+|+|++|||||||||++..++..+++.|. +..|+++|+||||+|+|++|+.
T Consensus 45 ~~~~~~TPL~~~~~l~~~~g~~~iy~K~E~~nptGS~K~R~a~~~~~~a~~~g~----~~vi~e~ssGN~G~alA~~a~~ 120 (385)
T TIGR00263 45 NYAGRPTPLTFAPNLTEALGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----KRIIAETGAGQHGVATATAAAL 120 (385)
T ss_pred HhCCCCCCceehHHHHHHhCCCeEEEEeCCCCCCccchHHHHHHHHHHHHHcCC----CEEEEEcCcHHHHHHHHHHHHH
Confidence 3454 899999999998887 699999999999999999999999999999884 2456679999999999999999
Q ss_pred cCCeEEEEECCC-CCH--HHHHHHHhcCCEEEEECCC-CChHHHHHHH-HHHHHhCCCceee-CCCCC----CcchHhhH
Q 021570 158 KGYKLILTMPAS-MSL--ERRVLLKAFGAELVLTDSA-KGMKGAVQKA-EEILNSTPNAYML-QQFDN----PANPKIHY 227 (311)
Q Consensus 158 ~Gi~~~vv~p~~-~~~--~k~~~l~~~GA~V~~v~~~-~~~~~a~~~a-~~~~~~~~~~~~~-~~~~n----~~~~~~G~ 227 (311)
+|++|+||||+. .+. .++.+|+.|||+|+.++.. ..++++++.+ .+++++.++.+|+ +++.| +.++++||
T Consensus 121 ~Gl~~~Iv~p~~~~~~~~~~~~~~~~~GA~Vv~v~~~~~~~~~a~~~~~~~~~~~~~~~~y~~~~~~~~~p~~~~~~~~~ 200 (385)
T TIGR00263 121 LGLDCEVYMGAEDVERQKPNVFRMELLGAKVIPVTSGSGTLKDAVNEALRDWVTSVDDTHYVLGSAVGPHPFPTMVRDFQ 200 (385)
T ss_pred cCCCEEEEecCCcccccchHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCceEEeCCcCCCCCchHHHHHHh
Confidence 999999999985 443 5788999999999999853 3467776544 4445554455666 44442 24555799
Q ss_pred HHHHHHHHHHcC---C-CCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCC--------chhhhcC---------
Q 021570 228 ETTGPEIWEDTR---G-KVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFIS--------KPYLACV--------- 286 (311)
Q Consensus 228 ~t~a~Ei~~Ql~---~-~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s--------~~~~~~~--------- 286 (311)
+|+|+||++|+. + .||+||+|+|+||+++|++.+|.+ .|+++||+|||+++ .++..+.
T Consensus 201 ~t~g~Ei~~Ql~~~~~~~pD~vv~~vG~Gg~~~Gv~~~~~~-~~~~~iigVe~~gs~~~~~~~~~~~~~g~~~~~~~~~~ 279 (385)
T TIGR00263 201 SVIGEEAKEQILEQEGRLPDAVIACVGGGSNAIGIFYAFID-DPSVQLIGVEAGGLGIDTDKHAATLAKGSPGVLHGMKT 279 (385)
T ss_pred hHHHHHHHHHHHhhhCCCCCEEEEEeCchHHHHHHHHHHhh-CCCCeEEEEEeCCCcccchhhhhhhhcCCeeEecCccc
Confidence 999999999983 2 489999999999999999999865 68999999999985 3343332
Q ss_pred ---------CCCCccccccccCCccc
Q 021570 287 ---------PYPPPSLCLTCQSESVL 303 (311)
Q Consensus 287 ---------~~~~~tiadgl~~~~~~ 303 (311)
.....|||+|++++.+.
T Consensus 280 ~~~~~~~~~~~~~~tia~gl~~~~~~ 305 (385)
T TIGR00263 280 YLLQDEDGQILEAHSVSAGLDYPGVG 305 (385)
T ss_pred ccccCCCCcccccceeeccccCCCCC
Confidence 12356899999887653
No 70
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=100.00 E-value=2.5e-40 Score=313.89 Aligned_cols=219 Identities=21% Similarity=0.148 Sum_probs=182.4
Q ss_pred hhcccccCCCceeecccccccCCCeEEEeeCCCCCC--CchhhHHHHHHHHHHHHcCCCCCCCceEEeeC--cChHHHHH
Q 021570 76 EDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPC--CSVKDRIGFSMIADAEQKGLITPGKSILVEPT--SGNTGIGL 151 (311)
Q Consensus 76 ~~i~~~~g~TPL~~~~~l~~~~g~~l~vK~E~~nPt--GS~KdRga~~~v~~A~~~G~~~~g~~~vv~aS--sGN~g~Al 151 (311)
+++...+++|||++++.+++..|.+||+|+|++||+ ||||||++.+++.+++++|. ++||+++ +||||+|+
T Consensus 7 ~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~lnp~g~gs~K~R~~~~~l~~a~~~g~-----~~vvt~g~s~gN~g~al 81 (331)
T PRK03910 7 PRLELAGLPTPLEPLPRLSAALGPDIYIKRDDLTGLALGGNKTRKLEFLLADALAQGA-----DTLITAGAIQSNHARQT 81 (331)
T ss_pred CCccccCCCCCceEhhhhhHhhCCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHcCC-----CEEEEcCcchhHHHHHH
Confidence 457889999999999999888889999999999996 59999999999999999985 5688764 58999999
Q ss_pred HHHHHHcCCeEEEEECCCCCH--------HHHHHHHhcCCEEEEECCCCChHH-HHHHHHHHHHhCCCce-eeCCCCCCc
Q 021570 152 AFIAASKGYKLILTMPASMSL--------ERRVLLKAFGAELVLTDSAKGMKG-AVQKAEEILNSTPNAY-MLQQFDNPA 221 (311)
Q Consensus 152 A~~aa~~Gi~~~vv~p~~~~~--------~k~~~l~~~GA~V~~v~~~~~~~~-a~~~a~~~~~~~~~~~-~~~~~~n~~ 221 (311)
|++|+.+|++|+||||+..+. .|+..++.|||+|+.++.+.++.+ +...+.++.++.+..+ +..++.|+.
T Consensus 82 A~~a~~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ 161 (331)
T PRK03910 82 AAAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVPAGTDMDAQLEELAEELRAQGRRPYVIPVGGSNAL 161 (331)
T ss_pred HHHHHHhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeCccchHHHHHHHHHHHHHHcCCceEEECCCCCCch
Confidence 999999999999999998775 456899999999999987533333 3445566665543333 346778999
Q ss_pred chHhhHHHHHHHHHHHcCC---CCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCCchhhhcCC-CCCccccccc
Q 021570 222 NPKIHYETTGPEIWEDTRG---KVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFISKPYLACVP-YPPPSLCLTC 297 (311)
Q Consensus 222 ~~~~G~~t~a~Ei~~Ql~~---~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s~~~~~~~~-~~~~tiadgl 297 (311)
+.+ |+.+++.||++|+++ .||+||+|+|+||+++|++++||+++|+++||||||++++.+..... ...+++++++
T Consensus 162 ~~~-g~~~~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~~a~~~ 240 (331)
T PRK03910 162 GAL-GYVACALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAALGPDIPVIGVTVSRSAAEQEPKVAKLAQATAELL 240 (331)
T ss_pred hHH-HHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHc
Confidence 985 889999999999974 59999999999999999999999999999999999999987765422 2346777877
Q ss_pred cCC
Q 021570 298 QSE 300 (311)
Q Consensus 298 ~~~ 300 (311)
..+
T Consensus 241 g~~ 243 (331)
T PRK03910 241 GLP 243 (331)
T ss_pred CCC
Confidence 665
No 71
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=100.00 E-value=1.9e-40 Score=311.97 Aligned_cols=212 Identities=20% Similarity=0.130 Sum_probs=173.8
Q ss_pred cCCCceeecccccccCCCeEEEeeCCCCCC--CchhhHHHHHHHHHHHHcCCCCCCCceEEee--CcChHHHHHHHHHHH
Q 021570 82 IGKTPMVYLNTIVKGCVANIAAKLEIMEPC--CSVKDRIGFSMIADAEQKGLITPGKSILVEP--TSGNTGIGLAFIAAS 157 (311)
Q Consensus 82 ~g~TPL~~~~~l~~~~g~~l~vK~E~~nPt--GS~KdRga~~~v~~A~~~G~~~~g~~~vv~a--SsGN~g~AlA~~aa~ 157 (311)
..+|||++++++++..|.+||+|+|++||+ ||||||++.+++.+++++|. ++||++ |+||||+|+|++|++
T Consensus 5 ~~~TPl~~~~~l~~~~g~~l~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~g~-----~~vv~~g~ssGN~g~alA~~a~~ 79 (311)
T TIGR01275 5 PWPTPIQYLPRISREIGAEIYIKRDDLTGLGIGGNKIRKLEYLLADALSKGA-----DTVITVGAIQSNHARATALAAKK 79 (311)
T ss_pred CCCCcceechhhhhhcCCeEEEEeccCcCCCCCchhHHHHHHHHHHHHHcCC-----CEEEEcCCchhHHHHHHHHHHHH
Confidence 457999999999888889999999999998 99999999999999999995 678887 669999999999999
Q ss_pred cCCeEEEEECCCC-CHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHH----hCC-CceeeCCCCCCcchHhhHHHHH
Q 021570 158 KGYKLILTMPASM-SLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILN----STP-NAYMLQQFDNPANPKIHYETTG 231 (311)
Q Consensus 158 ~Gi~~~vv~p~~~-~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~----~~~-~~~~~~~~~n~~~~~~G~~t~a 231 (311)
+|++++||||... +..+..+++.|||+|+.++... +++..+.+.++++ +.+ .+++.+++.|+.+.+ |+++++
T Consensus 80 ~G~~~~ivvp~~~~~~~~~~~~~~~Ga~v~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-g~~~~~ 157 (311)
T TIGR01275 80 LGLDAVLVLREKEELNGNLLLDKLMGAETRVYSAEE-YFEIMKYAEELAEELEKEGRKPYVIPVGGSNSLGTL-GYVEAV 157 (311)
T ss_pred hCCceEEEecCCccCCCCHHHHHHcCCEEEEECchh-hhhhHHHHHHHHHHHHhcCCCeEEECCCCCcHHHHH-HHHHHH
Confidence 9999999999865 4566778899999999998632 4444455444433 222 234558888999996 778899
Q ss_pred HHHHHHcCC--CCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCCchhhhc-CCCCCccccccccCC
Q 021570 232 PEIWEDTRG--KVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFISKPYLAC-VPYPPPSLCLTCQSE 300 (311)
Q Consensus 232 ~Ei~~Ql~~--~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s~~~~~~-~~~~~~tiadgl~~~ 300 (311)
+||++|+++ .||+||+|+|+||+++|++++||+++|+++||||||+.+.+.... .....+++++|+..+
T Consensus 158 ~EI~~q~~~~~~~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~vigV~~~~~~~~~~~~~~~~~~~~~~g~~~~ 229 (311)
T TIGR01275 158 LEIATQLESEVKFDSIVVAAGSGGTIAGLSLGLSILNEDIRPVGVAVGRFGEDMTDKFVNLVKEIAEGLEVK 229 (311)
T ss_pred HHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCcEEEEEecccHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999964 699999999999999999999999999999999999876332221 122456788888765
No 72
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=100.00 E-value=1.5e-40 Score=310.42 Aligned_cols=211 Identities=33% Similarity=0.443 Sum_probs=176.9
Q ss_pred cccccCCCceeecc--cccccCCCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHHHHHHH
Q 021570 78 VTQLIGKTPMVYLN--TIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIA 155 (311)
Q Consensus 78 i~~~~g~TPL~~~~--~l~~~~g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA~~a 155 (311)
|++++++|||++++ .+.+..+.+||+|+|++|||||||||++.+++.+++++|. ++|+++|+||||.|+|++|
T Consensus 1 i~~~~~~TPl~~~~~~~~~~~~~~~i~~K~E~~~ptgs~K~R~a~~~l~~a~~~~~-----~~vv~assGN~g~a~A~~a 75 (306)
T PF00291_consen 1 ISLGIGPTPLVRLPSRLLSELGGANIYLKREDLNPTGSFKDRGAYYLLSRAKEKGG-----RTVVGASSGNHGRALAYAA 75 (306)
T ss_dssp GGGGSSSS-EEEEHEHHHHHCTTSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTT-----SEEEEESSSHHHHHHHHHH
T ss_pred CcCCCcCCCEEECccccchhccCCeEEEEECCCCCcCCcccccchhhhhhcccccc-----ceeeeeccCCceehhhhhh
Confidence 56789999999975 4455567899999999999999999999999999999874 7799999999999999999
Q ss_pred HHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHh-------CCCceeeCCCCCCcchHhhHH
Q 021570 156 ASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNS-------TPNAYMLQQFDNPANPKIHYE 228 (311)
Q Consensus 156 a~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~-------~~~~~~~~~~~n~~~~~~G~~ 228 (311)
+.+|++|+||||+++++.|+.+++.+||+|+.++.+ ++++.+.+.+++++ .++. +++++|+..+ .||.
T Consensus 76 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~g~~ 150 (306)
T PF00291_consen 76 ARLGLKCTIVVPEDVSPEKLKQMRALGAEVILVPGD--VEGAFDDAQELAKERAELLSPFNGE--LNQYNNPNVI-AGYA 150 (306)
T ss_dssp HHHTCEEEEEEETTSHHHHHHHHHHTTCEEEEESST--HHHHHHHHHHHHHHHHHHHHHSTTE--ESTTTSHHHH-HHHH
T ss_pred hhccccceeeeccccccccccceeeecceEEEcccc--ccccccccccccccccccccccccc--cCcccchhhh-hhhh
Confidence 999999999999999999999999999999999876 45555554444432 1122 6777566666 5999
Q ss_pred HHHHHHHHHcCCCCCE--EEEccChhhHHHHHHHHHHh--cCCCCEEEEEeCCCCchhhhcCC------CCC-ccccccc
Q 021570 229 TTGPEIWEDTRGKVDI--FIGGIGTGGTISGAGRYLKE--KNPNIKVIIFVLFISKPYLACVP------YPP-PSLCLTC 297 (311)
Q Consensus 229 t~a~Ei~~Ql~~~pD~--vv~pvG~Gg~~~Gi~~~lk~--~~p~~~iigVe~~~s~~~~~~~~------~~~-~tiadgl 297 (311)
++++||++|++ .||+ ||+|+|+||+++|++++|++ . |++++|+|||.+++++.+++. ... ++++ ||
T Consensus 151 ~~~~Ei~~q~~-~~d~d~vvv~~GtGg~~~Gi~~~~~~~~~-~~~~vigv~~~~~~~~~~~~~~g~~~~~~~~~~~~-gl 227 (306)
T PF00291_consen 151 TIGLEIYEQLG-KPDPDYVVVPVGTGGTAAGIAAGLKELIL-PPVRVIGVEPEGSDPLYRSFKAGKPIRLPGESTIA-GL 227 (306)
T ss_dssp HHHHHHHHHHT-TESESEEEEEESSSHHHHHHHHHHHHHCH-TTSEEEEEEETTGHHHHHHHHHTSCEHSSCHHSST-GG
T ss_pred hcchhcccccc-cccceEEEecCCchhHHHHHHhhhhhhhc-ccccceeeeccCCccccccccccccccccceeeee-cc
Confidence 99999999997 7766 99999999999999999999 7 899999999999999986532 112 4555 99
Q ss_pred cCCc
Q 021570 298 QSES 301 (311)
Q Consensus 298 ~~~~ 301 (311)
+++.
T Consensus 228 ~~~~ 231 (306)
T PF00291_consen 228 GVPM 231 (306)
T ss_dssp TSSS
T ss_pred cCCc
Confidence 8877
No 73
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=9.8e-40 Score=331.76 Aligned_cols=228 Identities=17% Similarity=0.166 Sum_probs=188.2
Q ss_pred hhcccccC-CCceeeccccccc----CC--CeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHH
Q 021570 76 EDVTQLIG-KTPMVYLNTIVKG----CV--ANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTG 148 (311)
Q Consensus 76 ~~i~~~~g-~TPL~~~~~l~~~----~g--~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g 148 (311)
.....++| +|||+++++|++. +| .+||+|+|++|||||||||++.+++..|++.|. .++|+++|+||||
T Consensus 317 ~~~~~~iGrpTPL~~~~~Ls~~l~~~~G~g~~IylK~E~lNpTGS~KdR~Al~~i~~A~~~G~----~~~IvetssGNhG 392 (695)
T PRK13802 317 TLNQRYVGRPSPLTEAPRFAERVKEKTGLDARVFLKREDLNHTGAHKINNALGQALLVKRMGK----TRVIAETGAGQHG 392 (695)
T ss_pred HHHHhcCCCCCceeEchhhhhhhHhhcCCCceEEEEEccCCCcCCcHHHHHHHHHHHHHHcCC----CCEEEEECcHHHH
Confidence 34557788 9999999998753 44 699999999999999999999999999999996 3578899999999
Q ss_pred HHHHHHHHHcCCeEEEEECCC---CCHHHHHHHHhcCCEEEEECC-CCChHHHHHHHHH-HHHhCC-CceeeCCCCCC--
Q 021570 149 IGLAFIAASKGYKLILTMPAS---MSLERRVLLKAFGAELVLTDS-AKGMKGAVQKAEE-ILNSTP-NAYMLQQFDNP-- 220 (311)
Q Consensus 149 ~AlA~~aa~~Gi~~~vv~p~~---~~~~k~~~l~~~GA~V~~v~~-~~~~~~a~~~a~~-~~~~~~-~~~~~~~~~n~-- 220 (311)
+|+|++|+++|++|+||||+. .+..|+.+|+.|||+|+.++. ..+++++++++.+ ++++.+ ..|+++++.|+
T Consensus 393 ~AlA~aaA~~Gl~c~Ivmp~~~~~~~~~nv~~mr~lGAeVi~v~~g~~~l~~Ai~ea~~~~~~~~~~~~y~i~~~~g~~P 472 (695)
T PRK13802 393 VATATVCAMLGLKCRIYMGQIDARRQALNVARMRMLGAEVVEVTLGDRILKDAINEALRDWVTNVKDTHYLLGTVAGPHP 472 (695)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcccccHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHHHhcCCceEeecccCCCCC
Confidence 999999999999999999985 467899999999999999984 3357888776644 555433 44677887654
Q ss_pred --cchHhhHHHHHHHHHHHcCC-----CCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCCchhh--------h-
Q 021570 221 --ANPKIHYETTGPEIWEDTRG-----KVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFISKPYL--------A- 284 (311)
Q Consensus 221 --~~~~~G~~t~a~Ei~~Ql~~-----~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s~~~~--------~- 284 (311)
.++.+||+|+|+||++|+.+ .||+||+|+|+||+++|++++|++ .|++|||||||+++.+.. .
T Consensus 473 ~p~~v~agq~tiG~EI~eQ~~~~~g~~~pD~VVa~VGgGg~~~Gi~~~f~~-~~~vkligVE~~g~g~~~g~h~~~~~~g 551 (695)
T PRK13802 473 FPAMVRDFQKIIGEEAKQQLQDWYGIDHPDAICACVGGGSNAIGVMNAFLD-DERVNLYGYEAGGNGPESGKHAIRFAPG 551 (695)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEEcCCchHHHHHHHHHHHh-CCCceEEEEEecCCCccccchhhhhhhc
Confidence 34557999999999999953 599999999999999999999976 589999999999875332 1
Q ss_pred -cC-----------C-------CCCccccccccCCcccccccc
Q 021570 285 -CV-----------P-------YPPPSLCLTCQSESVLKLVAW 308 (311)
Q Consensus 285 -~~-----------~-------~~~~tiadgl~~~~~~~~~~~ 308 (311)
+. + .+.++|+.||..|.+.+..+|
T Consensus 552 ~g~~g~~~g~~~~~~~~~~g~~~~~~sis~gLdy~gvgp~~~~ 594 (695)
T PRK13802 552 TGELGMFQGAKSYLLENDEGQTLDTYSISAGLDYASVGPEHAW 594 (695)
T ss_pred cCCccccccceeecccCCCCCccCccccccccCCCCCCchhHH
Confidence 10 1 234789999998888877776
No 74
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=100.00 E-value=1.1e-39 Score=310.17 Aligned_cols=220 Identities=19% Similarity=0.116 Sum_probs=182.5
Q ss_pred hhcccccCCCceeecccccccCCC--eEEEeeCCCCCC---CchhhHHHHHHHHHHHHcCCCCCCCceEEee--CcChHH
Q 021570 76 EDVTQLIGKTPMVYLNTIVKGCVA--NIAAKLEIMEPC---CSVKDRIGFSMIADAEQKGLITPGKSILVEP--TSGNTG 148 (311)
Q Consensus 76 ~~i~~~~g~TPL~~~~~l~~~~g~--~l~vK~E~~nPt---GS~KdRga~~~v~~A~~~G~~~~g~~~vv~a--SsGN~g 148 (311)
.++.+.+|+|||++++++++.+|. +||+|+|++||+ ||||||.+.+++.+|+++|. .+|+++ |+||||
T Consensus 6 ~~~~l~~g~TPl~~~~~l~~~~g~~~~l~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~-----~~vvs~ggs~gN~g 80 (337)
T TIGR01274 6 PRYPLTFGPSPIHPLPRLSQHLGGKVTLYAKREDCNSGLAFGGNKTRKLEYLIPDAQAQGC-----TTLVSIGGIQSNQT 80 (337)
T ss_pred CccccCCCCCCceEhHhhHHhcCCCceEEEEccCCcCCcCccchHHHHHHHHHHHHHHcCC-----CEEEECCCCcchHH
Confidence 567889999999999999988874 999999999986 77899999999999999996 567766 779999
Q ss_pred HHHHHHHHHcCCeEEEEECCCCC--------HHHHHHHHhcCCEEEEECCCC--ChHHHHHHHHHHHHhCC-CceeeCCC
Q 021570 149 IGLAFIAASKGYKLILTMPASMS--------LERRVLLKAFGAELVLTDSAK--GMKGAVQKAEEILNSTP-NAYMLQQF 217 (311)
Q Consensus 149 ~AlA~~aa~~Gi~~~vv~p~~~~--------~~k~~~l~~~GA~V~~v~~~~--~~~~a~~~a~~~~~~~~-~~~~~~~~ 217 (311)
+|+|++|+++|++|+||||+..+ ..|+.+++.|||+|+.++.+. ...++...+.+.+++.+ ..|+++.+
T Consensus 81 ~alA~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~i~~~ 160 (337)
T TIGR01274 81 RQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDPDGFDIGHRNSWERALEEVRGAGGKPYPIPAG 160 (337)
T ss_pred HHHHHHHHHcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEeCCcccccchHHHHHHHHHHHhcCCceEEeCCC
Confidence 99999999999999999998542 589999999999999998752 12356666666665553 33666555
Q ss_pred C--CCcchHhhHHHHHHHHHHHc---CCCCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCCchhhhcCC-CCCc
Q 021570 218 D--NPANPKIHYETTGPEIWEDT---RGKVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFISKPYLACVP-YPPP 291 (311)
Q Consensus 218 ~--n~~~~~~G~~t~a~Ei~~Ql---~~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s~~~~~~~~-~~~~ 291 (311)
. ++.... |+.++++||++|+ +..||+||+|+|+||+++|++++|++..+++|||+|||++++++..... ...+
T Consensus 161 ~~~~~~~~~-G~~~~~~Ei~eq~~~~~~~~D~vvv~vGtGgt~aGl~~~~~~~~~~~~vigV~~~~~~~~~~~~~~~~~~ 239 (337)
T TIGR01274 161 CSDHPLGGL-GFVGFAFEVREQEGELGFKFDYVVVCSVTGSTQAGMVAGFAADGRKDRVIGIDASATPEQTRAQILRIAR 239 (337)
T ss_pred CCCCccchh-HHHHHHHHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHH
Confidence 3 466664 8999999999995 3469999999999999999999999999999999999999988865432 2356
Q ss_pred cccccccCCc
Q 021570 292 SLCLTCQSES 301 (311)
Q Consensus 292 tiadgl~~~~ 301 (311)
++++++.++.
T Consensus 240 ~~a~~~~~~~ 249 (337)
T TIGR01274 240 NTAEKIGLER 249 (337)
T ss_pred HHHHHhCCCC
Confidence 7888877654
No 75
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=1.8e-39 Score=308.72 Aligned_cols=220 Identities=17% Similarity=0.103 Sum_probs=180.8
Q ss_pred hhcccccCCCceeecccccccCC--CeEEEeeCCCCCC---CchhhHHHHHHHHHHHHcCCCCCCCceEEee--CcChHH
Q 021570 76 EDVTQLIGKTPMVYLNTIVKGCV--ANIAAKLEIMEPC---CSVKDRIGFSMIADAEQKGLITPGKSILVEP--TSGNTG 148 (311)
Q Consensus 76 ~~i~~~~g~TPL~~~~~l~~~~g--~~l~vK~E~~nPt---GS~KdRga~~~v~~A~~~G~~~~g~~~vv~a--SsGN~g 148 (311)
.++.+.+|+|||++++++.+..| .+||+|+|++||+ ||||||.+.+++.+|+++|. .+|+++ |+||||
T Consensus 7 ~~~~l~~g~TPL~~~~~l~~~~g~~~~v~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~-----~~vvs~G~s~GN~g 81 (337)
T PRK12390 7 PRYPLTFGPTPIHPLKRLSAHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDALAQGA-----DTLVSIGGVQSNHT 81 (337)
T ss_pred CccccCCCCCcceeHHHHHHHhCCCCeEEEEeCCCCCCCCccchhHHHHHHHHHHHHHcCC-----CEEEEeCCCccHHH
Confidence 45788899999999999988887 6999999999987 78899999999999999996 667877 889999
Q ss_pred HHHHHHHHHcCCeEEEEECCCCC--------HHHHHHHHhcCCEEEEECCCC--ChHHHHHHHHHHHHhCCCcee-eCCC
Q 021570 149 IGLAFIAASKGYKLILTMPASMS--------LERRVLLKAFGAELVLTDSAK--GMKGAVQKAEEILNSTPNAYM-LQQF 217 (311)
Q Consensus 149 ~AlA~~aa~~Gi~~~vv~p~~~~--------~~k~~~l~~~GA~V~~v~~~~--~~~~a~~~a~~~~~~~~~~~~-~~~~ 217 (311)
+|+|++|+++|++|+||||..++ ..|+.+++.|||+|+.++.+. .+.++.+.+.+.+++..+..| ++.+
T Consensus 82 ~alA~aa~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (337)
T PRK12390 82 RQVAAVAAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLVPDGFDIGIRKSWEDALEDVRAAGGKPYAIPAG 161 (337)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEeCCCcchhHHHHHHHHHHHHHhCCCceEEeCCc
Confidence 99999999999999999876544 337779999999999998752 234677777777766434444 5444
Q ss_pred CC--CcchHhhHHHHHHHHHHH---cCCCCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCCchhhhcCC-CCCc
Q 021570 218 DN--PANPKIHYETTGPEIWED---TRGKVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFISKPYLACVP-YPPP 291 (311)
Q Consensus 218 ~n--~~~~~~G~~t~a~Ei~~Q---l~~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s~~~~~~~~-~~~~ 291 (311)
.+ +... .|+.++++||++| ++++||+||+|+|+||+++|++++||+..|++|||+|||++++++..+.. ...+
T Consensus 162 ~~~~~~~~-~G~~~~a~Ei~~q~~~~~~~~d~vvv~vGtGgtlaGi~~~~k~~~~~~rvigV~~~~~~~~~~~~~~~~~~ 240 (337)
T PRK12390 162 ASDHPLGG-LGFVGFAEEVRAQEAELGFKFDYIVVCSVTGSTQAGMVVGFAADGRARRVIGIDASAKPEQTRAQVLRIAR 240 (337)
T ss_pred CCCCCccc-HHHHHHHHHHHHHHHhcCCCCCEEEEecCcchhHHHHHHHHHhcCCCceEEEEEecCchHHHHHHHHHHHH
Confidence 33 4455 3899999999998 54579999999999999999999999999999999999999988866521 2356
Q ss_pred cccccccCCc
Q 021570 292 SLCLTCQSES 301 (311)
Q Consensus 292 tiadgl~~~~ 301 (311)
++++++.++.
T Consensus 241 ~~a~~~g~~~ 250 (337)
T PRK12390 241 NTAELVELGR 250 (337)
T ss_pred HHHHHhCCCC
Confidence 7777776654
No 76
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-39 Score=292.51 Aligned_cols=230 Identities=37% Similarity=0.541 Sum_probs=199.5
Q ss_pred hhcccccCCCceeecccccccCCCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHHHHHHH
Q 021570 76 EDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIA 155 (311)
Q Consensus 76 ~~i~~~~g~TPL~~~~~l~~~~g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA~~a 155 (311)
.-+...+|+|||++++.|++..|++|+.|.|.+||.||.|||.|.++|..|+|.|.+.+| .+|++.++||+|+++|..|
T Consensus 41 ~Gv~~~IGnTpliri~sLs~aTGcnIlaK~Ef~NPggS~KDRvAl~iir~Aee~GkL~~g-g~v~EGtaGsTgIslA~v~ 119 (391)
T KOG1481|consen 41 SGVEGAIGNTPLIRINSLSNATGCNILAKAEFLNPGGSVKDRVALYIIRTAEEKGKLVRG-GTVVEGTAGSTGISLAHVA 119 (391)
T ss_pred chhHHhhCCCceEEeeccccccccchhhhhhccCCCCChhhhhHHHHHHHHHHcCCcccC-ceEEecCCCccchhHHHhh
Confidence 357788999999999999999999999999999999999999999999999999999999 7899999999999999999
Q ss_pred HHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCC-----h-HHHHHHHHHHHHhCC--CceeeCCCCCCcchHhhH
Q 021570 156 ASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKG-----M-KGAVQKAEEILNSTP--NAYMLQQFDNPANPKIHY 227 (311)
Q Consensus 156 a~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~-----~-~~a~~~a~~~~~~~~--~~~~~~~~~n~~~~~~G~ 227 (311)
..+|++|+|+||.+.+.+|.+.++.+||+|..|++..- | ..|.+.|.+...+.. ..+|.+||+|+.|+.+||
T Consensus 120 ~a~Gyk~~I~mPddqs~eK~~ile~LGA~V~rV~pa~i~dp~~yvn~Arr~an~~~~~~ngi~g~fAdQFeN~AN~~aHy 199 (391)
T KOG1481|consen 120 RALGYKCHIYMPDDQSQEKSDILEFLGAEVHRVPPAPIVDPNHYVNQARRAANETPNASNGIRGWFADQFENVANWLAHY 199 (391)
T ss_pred hhcCcceEEECCChHHHHHHHHHHHhcceeeecCCcCccChhHHHHHHHHHhhhcccccCCcccchhhhhcCHHHHHHHh
Confidence 99999999999999999999999999999999876431 2 223333333333221 247789999999999999
Q ss_pred HHHHHHHHHHcCCCCCEEEEccChhhHHHHHHHHHHhcCCC-CEEEEEeCCCCchhhh---cC------------CCCCc
Q 021570 228 ETTGPEIWEDTRGKVDIFIGGIGTGGTISGAGRYLKEKNPN-IKVIIFVLFISKPYLA---CV------------PYPPP 291 (311)
Q Consensus 228 ~t~a~Ei~~Ql~~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~-~~iigVe~~~s~~~~~---~~------------~~~~~ 291 (311)
.|+|.||+.|..+++|++++.+|+|||++|+.++||+..+. ++++.++|-||--..+ +. ....+
T Consensus 200 etTGPEIw~QtkGniDaFia~~GTGGTiaGVskyLkek~~~~v~~~laDPpGSGlYnkV~~GVmy~~~e~eG~r~r~q~d 279 (391)
T KOG1481|consen 200 ETTGPEIWHQTKGNIDAFIAGTGTGGTIAGVSKYLKEKSDGRVAVFLADPPGSGLYNKVNYGVMYDHIETEGTRRRNQVD 279 (391)
T ss_pred cCcCcHHHHhhcCCcceEEeccCCCcchHHHHHHHhhcCCCceEEEEeCCCCCchhhhhhhhhhhhhhhhcCcccCCCcc
Confidence 99999999999999999999999999999999999999876 8999999999843222 11 14678
Q ss_pred cccccccCCcccccc
Q 021570 292 SLCLTCQSESVLKLV 306 (311)
Q Consensus 292 tiadgl~~~~~~~~~ 306 (311)
||..||...++.+.+
T Consensus 280 ti~EGIGinRiT~Nf 294 (391)
T KOG1481|consen 280 TITEGIGINRITGNF 294 (391)
T ss_pred hhhhccccccccccc
Confidence 999999988877665
No 77
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=100.00 E-value=1.1e-38 Score=299.59 Aligned_cols=195 Identities=22% Similarity=0.180 Sum_probs=164.2
Q ss_pred CceeecccccccC--CCeEEEeeCCCCCC---CchhhHHHHHHHHHHHHcCCCCCCCceEEee--CcChHHHHHHHHHHH
Q 021570 85 TPMVYLNTIVKGC--VANIAAKLEIMEPC---CSVKDRIGFSMIADAEQKGLITPGKSILVEP--TSGNTGIGLAFIAAS 157 (311)
Q Consensus 85 TPL~~~~~l~~~~--g~~l~vK~E~~nPt---GS~KdRga~~~v~~A~~~G~~~~g~~~vv~a--SsGN~g~AlA~~aa~ 157 (311)
|||++++++++.+ +.+||+|+|++||+ ||||||++.+++.+|+++|. ++|+++ |+||||+|+|++|+.
T Consensus 1 TPl~~~~~l~~~~g~~~~l~~K~E~~np~gsfgs~K~R~~~~~l~~a~~~g~-----~~vv~~ggs~GN~g~alA~~a~~ 75 (307)
T cd06449 1 TPIQYLPRLSEHLGGKVEIYAKRDDCNSGLAFGGNKIRKLEYLLPDALAKGA-----DTLVTVGGIQSNHTRQVAAVAAK 75 (307)
T ss_pred CcccchhHHHHhhCCCCcEEEecccccCCCCccchHHHHHHHHHHHHHHcCC-----CEEEECCCchhHHHHHHHHHHHH
Confidence 8999999998877 56999999999998 56699999999999999996 678887 689999999999999
Q ss_pred cCCeEEEEECCCCC--------HHHHHHHHhcCCEEEEECCCCC--hHHHHHHHHHHHHhC-CCcee-eCCC-CCCcchH
Q 021570 158 KGYKLILTMPASMS--------LERRVLLKAFGAELVLTDSAKG--MKGAVQKAEEILNST-PNAYM-LQQF-DNPANPK 224 (311)
Q Consensus 158 ~Gi~~~vv~p~~~~--------~~k~~~l~~~GA~V~~v~~~~~--~~~a~~~a~~~~~~~-~~~~~-~~~~-~n~~~~~ 224 (311)
+|++|+||||.+.+ ..|+.+++.|||+|+.++.+.. ..++.+.+.+..++. +..|+ .+++ +|+.+++
T Consensus 76 ~G~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (307)
T cd06449 76 LGLKCVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLVSAGFDIGIRKSFEEAAEEVEAKGGKPYVIPAGGSEHPLGGL 155 (307)
T ss_pred cCCeEEEEecCCCCcccccccccccHHHHHHCCCEEEEECCcchhhHHHHHHHHHHHHHHcCCceEEecCCCCCCcccHH
Confidence 99999999999876 4689999999999999987631 123333443333333 23344 4454 4999996
Q ss_pred hhHHHHHHHHHHHcCC---CCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCCchhhhc
Q 021570 225 IHYETTGPEIWEDTRG---KVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFISKPYLAC 285 (311)
Q Consensus 225 ~G~~t~a~Ei~~Ql~~---~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s~~~~~~ 285 (311)
||.|+++||++|+++ .||+||+|+|+||+++|++++||+.+|++|||+|||++++++...
T Consensus 156 -G~~t~~~Ei~~q~~~~~~~~d~vv~~~GtGgt~~G~~~~~~~~~~~~~ii~V~~~~~~~~~~~ 218 (307)
T cd06449 156 -GYVGFVLEIAQQEEELGFKFDSIVVCSVTGSTHAGLSVGLAALGRQRRVIGIDASAKPEKTKA 218 (307)
T ss_pred -HHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhcCCCCeEEEEEecCchHHHHH
Confidence 999999999999964 699999999999999999999999999999999999999887643
No 78
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=1.6e-38 Score=322.38 Aligned_cols=224 Identities=21% Similarity=0.159 Sum_probs=180.7
Q ss_pred hcccccC-CCceeecccccccCCCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHHHHHHH
Q 021570 77 DVTQLIG-KTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIA 155 (311)
Q Consensus 77 ~i~~~~g-~TPL~~~~~l~~~~g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA~~a 155 (311)
....+.| +|||+++++|++.+|.+||+|+|++|||||||+|.+..++..|++.|. +..|+++|+||||+|+|++|
T Consensus 263 ~~~~~~grpTPL~~~~~Ls~~~G~~IylK~E~lnptGS~K~r~al~~~~~a~~~g~----~~vi~e~gsGnhG~A~A~~a 338 (610)
T PRK13803 263 LLQNYAGRPTPLTEAKRLSDIYGARIYLKREDLNHTGSHKINNALGQALLAKRMGK----TRIIAETGAGQHGVATATAC 338 (610)
T ss_pred HHHHhCCCCCcceeHHHHHHhhCCEEEEEeCCCCCcccHHHHHHHHHHHHHHHcCC----CEEEEecChHHHHHHHHHHH
Confidence 3445566 799999999998889999999999999999999999999999999884 24566789999999999999
Q ss_pred HHcCCeEEEEECCCC---CHHHHHHHHhcCCEEEEECCC-CChHHHHHHHHHH-HHhCCCceeeCCCC---C--CcchHh
Q 021570 156 ASKGYKLILTMPASM---SLERRVLLKAFGAELVLTDSA-KGMKGAVQKAEEI-LNSTPNAYMLQQFD---N--PANPKI 225 (311)
Q Consensus 156 a~~Gi~~~vv~p~~~---~~~k~~~l~~~GA~V~~v~~~-~~~~~a~~~a~~~-~~~~~~~~~~~~~~---n--~~~~~~ 225 (311)
+++|++|+||||+.. ...|+.+|+.|||+|+.++.. .++.++++++.+. ..+.++.+|+.++. + |.++..
T Consensus 339 a~~Gl~~~I~m~~~~~~~~~~nv~~m~~~GA~Vi~v~~~~~~~~~a~~~a~~~~~~~~~~~~y~~~~~~g~~p~p~~v~~ 418 (610)
T PRK13803 339 ALFGLKCTIFMGEEDIKRQALNVERMKLLGANVIPVLSGSKTLKDAVNEAIRDWVASVPDTHYLIGSAVGPHPYPEMVAY 418 (610)
T ss_pred HHcCCcEEEEEeCCcccchhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEeCCcCCCCCcHHHHHH
Confidence 999999999999863 256788999999999999853 3467777666554 24444667765432 2 445545
Q ss_pred hHHHHHHHHHHHcCC----CCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCC--------chhhhcC-------
Q 021570 226 HYETTGPEIWEDTRG----KVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFIS--------KPYLACV------- 286 (311)
Q Consensus 226 G~~t~a~Ei~~Ql~~----~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s--------~~~~~~~------- 286 (311)
||+|+|.||.+|+.. .||+||+|+|+||+++|++.+|++ .|+++||||||.++ .++..+.
T Consensus 419 ~~~tig~Ei~~Q~~~~~g~~pD~vV~~vGgGg~~~Gi~~~f~~-~~~v~iigVE~~g~~~~~~~~~a~l~~g~~g~~~g~ 497 (610)
T PRK13803 419 FQSVIGEEAKEQLKEQTGKLPDAIIACVGGGSNAIGIFYHFLD-DPSVKLIGVEAGGKGVNTGEHAATIKKGRKGVLHGS 497 (610)
T ss_pred HhhHHHHHHHHHHHHhhCCCCCEEEEEeCcCHhHHHHHHHHhh-CCCceEEEEecCCCCcccccccchhhcCCeeeeccc
Confidence 899999999999842 599999999999999999999975 68999999999985 3343331
Q ss_pred -----------CCCCccccccccCCccccc
Q 021570 287 -----------PYPPPSLCLTCQSESVLKL 305 (311)
Q Consensus 287 -----------~~~~~tiadgl~~~~~~~~ 305 (311)
...++||++||..+.+...
T Consensus 498 ~~~~~~~~~g~~~~~~sia~gl~~~gvg~~ 527 (610)
T PRK13803 498 MTYLMQDENGQILEPHSISAGLDYPGIGPM 527 (610)
T ss_pred eeeeecccCCcccCCceeeccCCCCCCCHH
Confidence 1346799999998876543
No 79
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=3e-37 Score=292.67 Aligned_cols=199 Identities=21% Similarity=0.233 Sum_probs=167.2
Q ss_pred hhhcccccCCCceeecccccccCCCeEEEeeCCCCCC--CchhhHHHHHHHHHHHHcCCCCCCCceEE--eeCcChHHHH
Q 021570 75 AEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPC--CSVKDRIGFSMIADAEQKGLITPGKSILV--EPTSGNTGIG 150 (311)
Q Consensus 75 ~~~i~~~~g~TPL~~~~~l~~~~g~~l~vK~E~~nPt--GS~KdRga~~~v~~A~~~G~~~~g~~~vv--~aSsGN~g~A 150 (311)
.+++.+.+++|||++++++++..|++||+|+|++||+ ||||||++.+++.+|.++|. ++|+ ++|+||||+|
T Consensus 12 ~~~~~l~~~~TPl~~~~~l~~~~g~~v~~K~E~l~~~~~gg~K~R~~~~~l~~a~~~G~-----~~vv~~~~ssGN~g~a 86 (329)
T PRK14045 12 FPRVELIPWETPIQYLPNISRELGADVYVKRDDLTGLGIGGNKIRKLEYLLGDALSRGA-----DVVITVGAVHSNHAFV 86 (329)
T ss_pred CCCcccCCCCCCcccchhhHHHhCCeEEEEcccccCCCCCcchHHHHHhHHHHHHHcCC-----CEEEEeCccHHHHHHH
Confidence 4578899999999999999888889999999999996 89999999999999999996 5566 5899999999
Q ss_pred HHHHHHHcCCeEEEEECCCCCHH-HHHHHHhcCCEEEEECCCCC---hHHHHHHHHHHHHhCCCcee-eCCCCCCcchHh
Q 021570 151 LAFIAASKGYKLILTMPASMSLE-RRVLLKAFGAELVLTDSAKG---MKGAVQKAEEILNSTPNAYM-LQQFDNPANPKI 225 (311)
Q Consensus 151 lA~~aa~~Gi~~~vv~p~~~~~~-k~~~l~~~GA~V~~v~~~~~---~~~a~~~a~~~~~~~~~~~~-~~~~~n~~~~~~ 225 (311)
+|++|+.+|+++++|||...+.. +...++.+||+++.++.... .+.+.+.+.++.++.+..|+ .+++.|+.+.+
T Consensus 87 lA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~n~~~~~- 165 (329)
T PRK14045 87 TGLAAKKLGLDAVLVLRGKEELKGNYLLDKIMGIETRVYEAKDSFELMKYAEEVAEELKGEGRKPYIIPPGGASPVGTL- 165 (329)
T ss_pred HHHHHHHcCCeEEEEEeCCCCCCcCHHHHHHCCCEEEEECCCcccchHHHHHHHHHHHHhcCCCEEEECCCCCchhHHH-
Confidence 99999999999999999875433 66678999999998874321 33556666666655444555 46667899986
Q ss_pred hHHHHHHHHHHHcC---CCCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCC
Q 021570 226 HYETTGPEIWEDTR---GKVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFIS 279 (311)
Q Consensus 226 G~~t~a~Ei~~Ql~---~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s 279 (311)
|+.+...||++|++ ..+|+||+|+||||+++|+++++|+.+|+++||+|+|.+.
T Consensus 166 g~~~~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~~~~ 222 (329)
T PRK14045 166 GYVRAVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAVGSF 222 (329)
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCC
Confidence 66555569999996 3699999999999999999999999999999999999773
No 80
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=99.97 E-value=2.4e-31 Score=243.63 Aligned_cols=251 Identities=20% Similarity=0.172 Sum_probs=202.8
Q ss_pred cCCCCcccccCCCCCccccccCcCccchHHHhhcccccccccCCCcccccccCCCCCCCccccchhhhcccccCCCceee
Q 021570 10 SPLTAPLCISKKSSLATLKLGYISPITAARRLKQNLYKVSYKPCNSVVCKAVSVKPQTGIEGLNIAEDVTQLIGKTPMVY 89 (311)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wRy~~llP~~~~~~~~~~~~~~i~~~~g~TPL~~ 89 (311)
+||.-|+=+.- -.+.++..+.++++++.++|+++.++|.++ |. ++.+.....-.+|||+|
T Consensus 24 epLppP~dP~t---~~~~~~e~L~~ifp~~lieqE~s~eR~i~I---------P~--------Ev~e~Y~~~gRPTPL~R 83 (432)
T COG1350 24 EPLPPPLDPET---GEPIRPELLKKIFPKKLIEQEFSGERYIKI---------PE--------EVREAYLQIGRPTPLIR 83 (432)
T ss_pred CCCCCCCCccc---cCCCCHHHHHHhccHHHHHHHhhhhhcccC---------cH--------HHHHHHHHhCCCCchhh
Confidence 46666665542 233467788899999999999999999876 43 23333333335899999
Q ss_pred cccccccCC--CeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEEC
Q 021570 90 LNTIVKGCV--ANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMP 167 (311)
Q Consensus 90 ~~~l~~~~g--~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p 167 (311)
+.+|.+.++ ++||+|.|+..||||||.+.|......++.+|. +..+.+..+|+||.|++.+|+.+|++|+|||-
T Consensus 84 A~~LE~~L~tparIYyK~Eg~tptGSHKiNTAlAqaYyak~eg~----~rl~TETGAGQWGsAlslA~alf~lk~~V~Mv 159 (432)
T COG1350 84 AKNLEEALGTPARIYYKYEGVTPTGSHKINTALAQAYYAKKEGA----KRLTTETGAGQWGSALSLAAALFGLKATVFMV 159 (432)
T ss_pred hhhHHHHhCCCcEEEEEecccCCCCCCCcchHHHHHHHHHhcCc----eeeecccCCchHHHHHHHHHHHhCceeEEEEE
Confidence 999999886 599999999999999999999999999999997 45566677899999999999999999999996
Q ss_pred C---CCCHHHHHHHHhcCCEEEEECCCCChH----------------HHHHHHHHHHHhCCCceeeCCCCCCcchHhhHH
Q 021570 168 A---SMSLERRVLLKAFGAELVLTDSAKGMK----------------GAVQKAEEILNSTPNAYMLQQFDNPANPKIHYE 228 (311)
Q Consensus 168 ~---~~~~~k~~~l~~~GA~V~~v~~~~~~~----------------~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~ 228 (311)
. ...+.++.+|+.|||+|+..+.+.+.. =|+.+|.|.+-++++..|...+--...++ ||.
T Consensus 160 r~Sy~qKpyRk~lM~~yGa~V~pSPS~~Te~Grk~l~e~p~hPGSLGIAISEAiE~al~~~~~kY~lGSVlnhvll-hQT 238 (432)
T COG1350 160 RVSYYQKPYRKYLMELYGAEVVPSPSELTEFGRKILKEDPDHPGSLGIAISEAIEYALKNENTKYSLGSVLNHVLL-HQT 238 (432)
T ss_pred ehhhhcchHHHHHHHHhCCeecCCCcchhHHHHHHHhcCCCCCchhHHHHHHHHHHHHhCCCceecchhHHHHHHH-HHH
Confidence 5 468889999999999999988764311 17888888887776677776666566665 999
Q ss_pred HHHHHHHHHc---CCCCCEEEEccChhhHHHHHHHHHHh--cC--CCCEEEEEeCCCCchhhhc
Q 021570 229 TTGPEIWEDT---RGKVDIFIGGIGTGGTISGAGRYLKE--KN--PNIKVIIFVLFISKPYLAC 285 (311)
Q Consensus 229 t~a~Ei~~Ql---~~~pD~vv~pvG~Gg~~~Gi~~~lk~--~~--p~~~iigVe~~~s~~~~~~ 285 (311)
.+|+|..+|+ +..||++|.+||+|++++|+..-|-. +. ..+++|+|||..|+.|.++
T Consensus 239 ViGlEakkQle~~~e~PDv~igcvGGGSNfag~~yPfi~d~l~g~~~~~fiAvep~a~P~lT~G 302 (432)
T COG1350 239 VIGLEAKKQLEQAGEDPDVIIGCVGGGSNFAGLTYPFIGDKLRGKKETRFIAVEPKACPKLTKG 302 (432)
T ss_pred HHhHHHHHHHHhcCCCCCEEEEeccCCCccccccchhhhhhhcCCceeEEEEeCCccCCccccc
Confidence 9999996554 56799999999999999999766643 11 2379999999999999987
No 81
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=99.97 E-value=7.9e-32 Score=244.82 Aligned_cols=270 Identities=17% Similarity=0.157 Sum_probs=221.4
Q ss_pred cccCcCccchH-HH--hhcccccccccCC--CcccccccCCCCCCCccccchhhhcccccCCCceeeccccc----ccC-
Q 021570 28 KLGYISPITAA-RR--LKQNLYKVSYKPC--NSVVCKAVSVKPQTGIEGLNIAEDVTQLIGKTPMVYLNTIV----KGC- 97 (311)
Q Consensus 28 ~~~~~~~~~~~-~~--~~~~~~~~~~~~~--~~wRy~~llP~~~~~~~~~~~~~~i~~~~g~TPL~~~~~l~----~~~- 97 (311)
.-.|+||...+ +. .+..+...++.+. .+-||++++-. .|++ ..-..++-..||+.++.+. +++
T Consensus 24 ev~W~NP~~~~~~e~l~~~~l~~~dv~dA~~Rl~RFAPyiak--~FPe-----T~~~~GiIES~lv~i~~mq~~Le~~Y~ 96 (443)
T COG3048 24 EVTWFNPGITSLAEGLPYVGLTEQDVQDAEARLQRFAPYIAK--AFPE-----TAATGGIIESPLVEIPAMQKRLEKEYQ 96 (443)
T ss_pred cccccCcCccchhcccccCCCchhHHHHHHHHHHHhhHHHHH--hCcc-----ccccCCeeccchhhhHHHHHHHHHHhc
Confidence 56899998544 21 2223333344433 67788876532 0111 2345677789999876543 333
Q ss_pred ---CCeEEEeeCCCCC-CCchhhHHHHHHHHH-----HHHcCCCCCCCc----------------eEEeeCcChHHHHHH
Q 021570 98 ---VANIAAKLEIMEP-CCSVKDRIGFSMIAD-----AEQKGLITPGKS----------------ILVEPTSGNTGIGLA 152 (311)
Q Consensus 98 ---g~~l~vK~E~~nP-tGS~KdRga~~~v~~-----A~~~G~~~~g~~----------------~vv~aSsGN~g~AlA 152 (311)
..++|+|.|++.| +||+|.||..|.|.. |+|.|.++-.++ .|.+.|+||.|.++.
T Consensus 97 ~~i~G~llLK~DshLpIsGSIKARGGIYEVL~hAE~LAle~Gll~~~DDYs~L~~~~f~~FFs~ysIaVGSTGNLGlSIG 176 (443)
T COG3048 97 QPIPGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLEDDYSILLSEEFKDFFSRYSIAVGSTGNLGLSIG 176 (443)
T ss_pred CCCCcceeeeccCCCCcccceeccccHHHHHHHHHHHHHhcCcccccchHHHhhcHHHHHHHHhheEeecccCccceehh
Confidence 3599999999999 899999999998864 667887765433 799999999999999
Q ss_pred HHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCCCCCCcchHhhHHHHHH
Q 021570 153 FIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYETTGP 232 (311)
Q Consensus 153 ~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~t~a~ 232 (311)
...+.+|++++|.|+.++..+|.+.+|..|.+|+....+ |..|+++-++.++.+|.+||++..++-..++ ||...+.
T Consensus 177 I~sA~lGF~vtVHMSADAr~WKKd~LRs~gV~ViEYe~D--Y~~AVeeGRk~a~~DP~c~FiDDE~S~~LFL-GYaVAa~ 253 (443)
T COG3048 177 IMSAALGFKVTVHMSADARAWKKDKLRSHGVTVVEYEQD--YGVAVEEGRKEAESDPNCFFIDDENSRTLFL-GYAVAAQ 253 (443)
T ss_pred hhhhhhcceEEEEecchHHHHHHHHHHhcCceEEEecch--hhHHHHHhhhhhccCCceEEecccchhhhhh-hHHHHHH
Confidence 999999999999999999999999999999999999988 8899999999999999999999988888886 9999999
Q ss_pred HHHHHcC--------CCCCEEEEccChhhHHHHHHHHHHhcC-CCCEEEEEeCCCCchhhhcCC-------------CCC
Q 021570 233 EIWEDTR--------GKVDIFIGGIGTGGTISGAGRYLKEKN-PNIKVIIFVLFISKPYLACVP-------------YPP 290 (311)
Q Consensus 233 Ei~~Ql~--------~~pD~vv~pvG~Gg~~~Gi~~~lk~~~-p~~~iigVe~~~s~~~~~~~~-------------~~~ 290 (311)
.|-.|+. .+|-.|.+|||.||...|++.|+|..+ .+++++.+||..||+|..+.. .+.
T Consensus 254 Rlk~Q~d~~gi~vd~ehPLfVylPCGVGGgPGGVafGLKl~fgd~VhcfFaEPthsPcMlLGv~tGlHe~ISVqdiGidn 333 (443)
T COG3048 254 RLKKQFDEQGIVVDAEHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGVYTGLHEQISVQDIGIDN 333 (443)
T ss_pred HHHHHHHhcCceecCCCceEEEeecCCCCCcchhhhhhHhhhcCceEEEEecCCCChHHHHhhhhccccceeeEeecccc
Confidence 9999984 258899999999999999999999865 689999999999999988731 578
Q ss_pred ccccccccCCccccccc
Q 021570 291 PSLCLTCQSESVLKLVA 307 (311)
Q Consensus 291 ~tiadgl~~~~~~~~~~ 307 (311)
.|-||||+|+++|.+|.
T Consensus 334 ~TaADGLAVgRpSgfVg 350 (443)
T COG3048 334 LTAADGLAVGRPSGFVG 350 (443)
T ss_pred cccccceeecCccchHH
Confidence 89999999999999985
No 82
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.96 E-value=8.2e-29 Score=226.53 Aligned_cols=226 Identities=18% Similarity=0.162 Sum_probs=183.7
Q ss_pred cccccC-CCceeecccccccCCCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHHHHHHHH
Q 021570 78 VTQLIG-KTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAA 156 (311)
Q Consensus 78 i~~~~g-~TPL~~~~~l~~~~g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa 156 (311)
+..+.| +|||+.+++|.+.+|.+||+|+|++|.||++|.+-+...+.-|++.|+ ++.|.+..+|.||.|.|.+|+
T Consensus 49 l~~Y~GRptpLy~a~~Lt~~~gakiyLKREDL~HtGAHKiNN~lGQ~LLAkrMGK----~riIAETGAGQHGVAtAta~A 124 (396)
T COG0133 49 LKDYAGRPTPLYFAERLTEHLGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----TRIIAETGAGQHGVATATAAA 124 (396)
T ss_pred HHHhCCCCChhHHHHHHHHhhCceEEEehhhhcccchhhHHHHHHHHHHHHHhCC----ceEEeecCCCcccHHHHHHHH
Confidence 444555 599999999999999999999999999999999999999999999997 577888899999999999999
Q ss_pred HcCCeEEEEECC-CCCH--HHHHHHHhcCCEEEEECC-CCChHHHHHHHHHH-HHhCCCceeeCC-----CCCCcchHhh
Q 021570 157 SKGYKLILTMPA-SMSL--ERRVLLKAFGAELVLTDS-AKGMKGAVQKAEEI-LNSTPNAYMLQQ-----FDNPANPKIH 226 (311)
Q Consensus 157 ~~Gi~~~vv~p~-~~~~--~k~~~l~~~GA~V~~v~~-~~~~~~a~~~a~~~-~~~~~~~~~~~~-----~~n~~~~~~G 226 (311)
++|++|+|||-. ++.. .++.+|+.+||+|+.|.. +.+..||+++|.+. ...-...+|+.. .--|..+...
T Consensus 125 ~fgl~C~iYMGa~Dv~RQ~~NVfRM~LlGA~V~pV~sGs~TLKDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP~iVRdF 204 (396)
T COG0133 125 LFGLECVIYMGAEDVERQALNVFRMRLLGAEVVPVTSGSGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVRDF 204 (396)
T ss_pred HhCCceEEEecchhhhhcccchhhhhhcCceEEEeccCCchHHHHHHHHHHHHHhccccceEEEeeccCCCCchHHHHHH
Confidence 999999999965 4433 356688999999998864 44578999888664 343345666533 2235555558
Q ss_pred HHHHHHHHHHHc----CCCCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCC--------CchhhhcC--------
Q 021570 227 YETTGPEIWEDT----RGKVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFI--------SKPYLACV-------- 286 (311)
Q Consensus 227 ~~t~a~Ei~~Ql----~~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~--------s~~~~~~~-------- 286 (311)
|+.||.|.-+|+ +.-||+||.+||+|++..|+...|.+. +++++||||+.| ++++..+.
T Consensus 205 Q~vIG~E~k~Qile~egrlPD~vvACVGGGSNAiG~F~~Fi~d-~~V~LiGvEaaG~Gi~t~~HaAtl~~G~~GvlhG~~ 283 (396)
T COG0133 205 QSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFIDD-ESVRLIGVEAAGKGIETGKHAATLTAGRPGVLHGMK 283 (396)
T ss_pred HHHHhHHHHHHHHHHhCCCCCeEEEeccCCcchhhhcccccCC-CCceEEEeccCcCccCCCccceeecCCCceeeeccc
Confidence 999999998886 334999999999999999998888653 689999999987 44555442
Q ss_pred ----------CCCCccccccccCCcccccccc
Q 021570 287 ----------PYPPPSLCLTCQSESVLKLVAW 308 (311)
Q Consensus 287 ----------~~~~~tiadgl~~~~~~~~~~~ 308 (311)
....++|..||..|.+.+--||
T Consensus 284 tyllQd~~GQi~e~hSISAGLDYPgVGPeha~ 315 (396)
T COG0133 284 TYLLQDEDGQILESHSISAGLDYPGVGPEHAY 315 (396)
T ss_pred ceeeEcCCCCEeeeeeeccCCCCCCCChhHHH
Confidence 1467899999999998887776
No 83
>PRK09225 threonine synthase; Validated
Probab=99.95 E-value=1.5e-26 Score=227.36 Aligned_cols=205 Identities=14% Similarity=0.078 Sum_probs=167.1
Q ss_pred CCceeecccccccCCCeEEEeeCCCCCCCchhhHHHHH---HHHHHHHcCCCCCCCceEEeeCcChHHHHH-HHHHHHcC
Q 021570 84 KTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFS---MIADAEQKGLITPGKSILVEPTSGNTGIGL-AFIAASKG 159 (311)
Q Consensus 84 ~TPL~~~~~l~~~~g~~l~vK~E~~nPtGS~KdRga~~---~v~~A~~~G~~~~g~~~vv~aSsGN~g~Al-A~~aa~~G 159 (311)
.+||.+++. ++|+.--+++||||||||++.. ++.++++ |. ..+|+++||||+|.|+ |.++++.|
T Consensus 88 ~~pl~~l~~-------~~~~lELfhGPT~sFKD~a~~~l~~~l~~a~~-~~----~~~Il~ATSGdtG~Aa~aaf~~~~g 155 (462)
T PRK09225 88 IAPLVQLDD-------NLYVLELFHGPTLAFKDFALQFLAQLLEYVLK-GE----KITILGATSGDTGSAAAEAFRGKPN 155 (462)
T ss_pred ccceEEeCC-------CceeHhhccCCccchhhhHHHHHHHHHHHHHh-CC----CcEEEEcCCCcHHHHHHHHHhCcCC
Confidence 488887742 6888888899999999999988 8888887 42 3689999999999999 79999999
Q ss_pred CeEEEEECCC-CCHHHHHHHHhc-CCEE--EEECCCCChHHHHHHHHHHHHhC-----CCceeeCCCCCCcchHhhHHHH
Q 021570 160 YKLILTMPAS-MSLERRVLLKAF-GAEL--VLTDSAKGMKGAVQKAEEILNST-----PNAYMLQQFDNPANPKIHYETT 230 (311)
Q Consensus 160 i~~~vv~p~~-~~~~k~~~l~~~-GA~V--~~v~~~~~~~~a~~~a~~~~~~~-----~~~~~~~~~~n~~~~~~G~~t~ 230 (311)
++|+|++|++ ++..++.||..+ |++| +.++++ ||++.+.+.++.++. .+++-.+. -|+.+++ ||++.
T Consensus 156 i~~~V~~P~g~vs~~q~~Qm~t~~g~nv~vi~V~G~--fDD~q~~vk~~~~d~~~~~~~~l~saNS-iN~~Ri~-gQ~~y 231 (462)
T PRK09225 156 VRVVILYPKGKVSPVQEKQMTTLQGDNIHVVAVEGN--FDDCQALVKAAFNDEELKEKLKLSSANS-INIGRLL-AQIVY 231 (462)
T ss_pred CEEEEEEcCCCCCHHHHHHHHhhcCCCeEEEEeCCC--HHHHHHHHHHHhhchhhhhcCceEEEec-cCHHHHH-HHHHH
Confidence 9999999996 999999999999 9977 677776 999999888876541 14444454 5899996 99999
Q ss_pred HHHHHHHcCC---CCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCCchhhhcC------C-CCCccccccccCC
Q 021570 231 GPEIWEDTRG---KVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFISKPYLACV------P-YPPPSLCLTCQSE 300 (311)
Q Consensus 231 a~Ei~~Ql~~---~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s~~~~~~~------~-~~~~tiadgl~~~ 300 (311)
++|+++|+++ .||.|++|+|+||++.|.+++.+.-.|-.|+|+++ ..++++.+.+ + ....|++++|.++
T Consensus 232 yfea~~ql~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~A~-n~n~~l~~~~~~G~y~~~~~~~T~s~amdI~ 310 (462)
T PRK09225 232 YFYAYLQLGIEAGEKVNFSVPSGNFGNILAGYYAKKMGLPIKRLIVAT-NENDVLTRFLKTGVYDPRPTVATLSPAMDIS 310 (462)
T ss_pred HHHHHHHhccccCCCCEEEEECCcHHHHHHHHHHHHcCCCcceEEEEe-cCChHHHHHHHcCCCccCCCCCCcCchhhcC
Confidence 9999999975 39999999999999999999943333655999997 5555655531 1 3578999999999
Q ss_pred ccccc
Q 021570 301 SVLKL 305 (311)
Q Consensus 301 ~~~~~ 305 (311)
.++.+
T Consensus 311 ~psn~ 315 (462)
T PRK09225 311 VSSNF 315 (462)
T ss_pred CCCcH
Confidence 87653
No 84
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=99.94 E-value=2e-25 Score=219.37 Aligned_cols=204 Identities=14% Similarity=0.046 Sum_probs=166.9
Q ss_pred CCceeecccccccCCCeEEEeeCCCCCCCchhhHHHHHH---HHHHHHc--CCCCCCCceEEeeCcChHHHH-HHHHHHH
Q 021570 84 KTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSM---IADAEQK--GLITPGKSILVEPTSGNTGIG-LAFIAAS 157 (311)
Q Consensus 84 ~TPL~~~~~l~~~~g~~l~vK~E~~nPtGS~KdRga~~~---v~~A~~~--G~~~~g~~~vv~aSsGN~g~A-lA~~aa~ 157 (311)
-+||.++.. ++|++-.+++||||||||++..+ +.+++++ | ...|+++||||+|.| ++.++++
T Consensus 87 ~~pl~~l~~-------~~~~lELfhGPT~sFKD~a~~~l~~l~~~~~~~~~~-----~~~Il~ATSGdTG~Aa~aaf~~~ 154 (460)
T cd01560 87 IAPLVQLGD-------NLYVLELFHGPTLAFKDMALQFLGRLLEYFLKRRNE-----RITILVATSGDTGSAAIEGFRGK 154 (460)
T ss_pred ccceEEeCC-------CcEEeeeeeCCCcchHHhHHHHHHHHHHHHHHhcCC-----CeEEEEcCCCcHHHHHHHHHhCc
Confidence 388887652 78999999999999999999876 6677655 4 368999999999999 5899999
Q ss_pred cCCeEEEEECCC-CCHHHHHHHHhcCC---EEEEECCCCChHHHHHHHHHHHHhC-----CCceeeCCCCCCcchHhhHH
Q 021570 158 KGYKLILTMPAS-MSLERRVLLKAFGA---ELVLTDSAKGMKGAVQKAEEILNST-----PNAYMLQQFDNPANPKIHYE 228 (311)
Q Consensus 158 ~Gi~~~vv~p~~-~~~~k~~~l~~~GA---~V~~v~~~~~~~~a~~~a~~~~~~~-----~~~~~~~~~~n~~~~~~G~~ 228 (311)
.|++|+|++|++ +++.++.||..+|+ +++.++++ ||++.+.+.++.++. -+++-.+. -|+.+++ ||+
T Consensus 155 ~gi~v~Vl~P~g~vs~~Q~~Qm~t~g~~Nv~vi~V~G~--fDd~q~~vk~~~~d~~~~~~~~l~saNS-iN~~Ri~-~Q~ 230 (460)
T cd01560 155 PNVDVVVLYPKGGVSPIQELQMTTLPADNVHVVAVEGD--FDDCQSLVKALFADEDFNKKLKLSSANS-INWARIL-AQI 230 (460)
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhhCCCceEEEEEcCC--HHHHHHHHHHHhcChhhHhcceEEEEec-cCHHHHH-HHH
Confidence 999999999996 99999999999996 88889887 999999888876431 13344444 5899996 999
Q ss_pred HHHHHHHHHcCC----CCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCCchhhhc-----C---C-CCCccccc
Q 021570 229 TTGPEIWEDTRG----KVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFISKPYLAC-----V---P-YPPPSLCL 295 (311)
Q Consensus 229 t~a~Ei~~Ql~~----~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s~~~~~~-----~---~-~~~~tiad 295 (311)
+..+|+++|+.+ .||.|+||+|+||++.|.+++.+.-.|-.|+|++ .+++++... . . ....|+++
T Consensus 231 ~yyf~a~~ql~~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~a--~n~n~il~~~~~~G~y~~~~~~~~T~sp 308 (460)
T cd01560 231 VYYFYAYLQLLKRGEGEKVEFSVPTGNFGNILAGYYAKKMGLPIKKLIVA--TNENDVLRRFFKTGRYDRRESLKQTLSP 308 (460)
T ss_pred HHHHHHHHHhccccCCCCCEEEEECCcHHHHHHHHHHHHcCCCCccEEEE--eCCChHHHHHHHcCCCcCCCCCCCCcCc
Confidence 999999999974 5999999999999999999996654466689986 456676542 1 1 35789999
Q ss_pred cccCCccccc
Q 021570 296 TCQSESVLKL 305 (311)
Q Consensus 296 gl~~~~~~~~ 305 (311)
+|.++.++.+
T Consensus 309 amdI~~psn~ 318 (460)
T cd01560 309 AMDILKSSNF 318 (460)
T ss_pred hhhcCCCCCH
Confidence 9999987643
No 85
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=99.92 E-value=5.2e-24 Score=194.53 Aligned_cols=205 Identities=21% Similarity=0.176 Sum_probs=169.7
Q ss_pred hhhcccccCCCceeecccccccCCCeEEEeeCCCCC--CCchhhHHHHHHHHHHHHcCCCCCCCceEEee--CcChHHHH
Q 021570 75 AEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEP--CCSVKDRIGFSMIADAEQKGLITPGKSILVEP--TSGNTGIG 150 (311)
Q Consensus 75 ~~~i~~~~g~TPL~~~~~l~~~~g~~l~vK~E~~nP--tGS~KdRga~~~v~~A~~~G~~~~g~~~vv~a--SsGN~g~A 150 (311)
.+|+....++||+.+++++++.+|.+||+|+|+..+ .|.+|.|...+.+.+|..+|. +++|+. ..+||.++
T Consensus 6 f~R~~l~~~pTPiq~L~rls~~lg~eiYiKRDD~t~l~~gGNK~RKLefll~eal~~g~-----dTlvT~GgiQSNh~r~ 80 (323)
T COG2515 6 FPRMELIFGPTPIQKLPRLSAHLGVEIYIKRDDLTGLAFGGNKIRKLEFLLGEALRKGA-----DTLVTYGGIQSNHVRQ 80 (323)
T ss_pred CCccccCCCCChhhhHHHHHHhcCeEEEEEcccccccccCccHHHHHHHHHhhhhhcCC-----cEEEEecccchhHHHH
Confidence 456778888999999999999999999999999976 689999999999999999996 678877 45999999
Q ss_pred HHHHHHHcCCeEEEEECCCC----CHHHHHHHHhcCCEEEEECCCCCh--HHHHHHHHHHHHhCCCceeeCCCC--CCcc
Q 021570 151 LAFIAASKGYKLILTMPASM----SLERRVLLKAFGAELVLTDSAKGM--KGAVQKAEEILNSTPNAYMLQQFD--NPAN 222 (311)
Q Consensus 151 lA~~aa~~Gi~~~vv~p~~~----~~~k~~~l~~~GA~V~~v~~~~~~--~~a~~~a~~~~~~~~~~~~~~~~~--n~~~ 222 (311)
+|++|+++|++|+.++.... -..++...+.+|+++..++...++ ....+...+..++.++..|+.+.. ||..
T Consensus 81 tAavA~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~~e~~~~~g~kpyvIp~GG~~~~g 160 (323)
T COG2515 81 TAAVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEELAEEVRKQGGKPYVIPEGGSSPLG 160 (323)
T ss_pred HHHHHHhcCCcEEEEEeccccccccccchhhhhhcCceEEEecCCCChhhchhhHHHHHHHHhcCCCCcEeccCCcCccc
Confidence 99999999999999996543 233566778899999999887544 334445555555555655554433 5555
Q ss_pred hHhhHHHHHHHHHHHcC--CCCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCCchhhhc
Q 021570 223 PKIHYETTGPEIWEDTR--GKVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFISKPYLAC 285 (311)
Q Consensus 223 ~~~G~~t~a~Ei~~Ql~--~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s~~~~~~ 285 (311)
-. ||...+.||.+|.. -.+|+||+++|||||.+|+..++....++.+|||+...+.....+.
T Consensus 161 ~l-Gyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~ViG~~v~~~~~~~~~ 224 (323)
T COG2515 161 AL-GYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVSADPEKLKE 224 (323)
T ss_pred cc-cHHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHhhhccCCCceEEEeecCCHHHHHH
Confidence 54 99999999999987 4699999999999999999999999999999999999998877654
No 86
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.92 E-value=1.2e-24 Score=201.15 Aligned_cols=224 Identities=17% Similarity=0.160 Sum_probs=166.8
Q ss_pred cccccC-CCceeecccccccC--CCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHHHHHH
Q 021570 78 VTQLIG-KTPMVYLNTIVKGC--VANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFI 154 (311)
Q Consensus 78 i~~~~g-~TPL~~~~~l~~~~--g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA~~ 154 (311)
+..++| +|||++++||.+.+ |.+||+|+|++|||||+|.+.+...+..|++.|+ +..|.+..+|+||.|+|.+
T Consensus 115 iy~y~gRpspL~~AkRLte~~q~ga~IylKrEdlnh~GsHKiNnav~QallakrlGk----knviaETGAGQhGvatA~a 190 (477)
T KOG1395|consen 115 IYKYLGRPSPLIRAKRLTEHCQTGARIYLKREDLNHTGSHKINNAVAQALLAKRLGK----KNVIAETGAGQHGVATATA 190 (477)
T ss_pred HHHHcCCCchhHHHHHHHHHhCCCCEEEEEecCCCccccCCcccHHHHHHHHHHhcc----cceeeccCCCccchHHHHH
Confidence 343444 69999999998876 5799999999999999999999999999999997 5678888999999999999
Q ss_pred HHHcCCeEEEEECCC---CCHHHHHHHHhcCCEEEEECCC-CChHHHHHHHHHHHH-hCCCceeeCCC-CC----CcchH
Q 021570 155 AASKGYKLILTMPAS---MSLERRVLLKAFGAELVLTDSA-KGMKGAVQKAEEILN-STPNAYMLQQF-DN----PANPK 224 (311)
Q Consensus 155 aa~~Gi~~~vv~p~~---~~~~k~~~l~~~GA~V~~v~~~-~~~~~a~~~a~~~~~-~~~~~~~~~~~-~n----~~~~~ 224 (311)
|+++|++|+|+|-.+ ..+.++.+||.+||+|+.+... .+..++...+.++-- .....+|+... .. |..+.
T Consensus 191 ~a~FGl~C~v~mgAed~~rqalnvfrmrllGAkV~pv~sGt~tLrda~sea~r~wvt~~ett~y~~gs~~gphp~pt~vr 270 (477)
T KOG1395|consen 191 CAKFGLDCTVYMGAEDYRRQALNVFRMRLLGAKVHPVTSGTRTLRDATSEAGRLWVTNSETTHYAAGSAIGPHPYPTVVR 270 (477)
T ss_pred HHHhCCceEEEechhHHHHHHHHHHHHHHhCceEeecCCCceehhcccchhhhhhhhhhheeeeeecccCCCCCcHHHHH
Confidence 999999999999653 3566788999999999998753 234455555544311 11133443222 22 22222
Q ss_pred hhHHHHHHHHHHHc----CCCCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCCc--------hhhhc-------
Q 021570 225 IHYETTGPEIWEDT----RGKVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFISK--------PYLAC------- 285 (311)
Q Consensus 225 ~G~~t~a~Ei~~Ql----~~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s~--------~~~~~------- 285 (311)
--+.+|+-|-..|. ++.||.||.++|+|++.+|+..-|..- ..+++|+||..+-. .++.+
T Consensus 271 ~fhsvIg~Et~~Q~me~~g~~PD~vvaCvGGGSN~~Glf~pF~~d-k~v~~igveaagdg~dtp~hsatltagd~Gv~hG 349 (477)
T KOG1395|consen 271 TFHSVIGKETKIQQMEKFGKLPDAVVACVGGGSNSAGLFSPFIRD-KSVGMIGVEAAGDGVDTPKHSATLTAGDVGVFHG 349 (477)
T ss_pred HHHHHHhHHHHHHHHHHhCCCCCeEEEeccCCCccccccchhhcc-chhheeeeeecccccCCcchhceeeccccccccc
Confidence 35678888876664 345999999999999999998888753 35688999887622 12222
Q ss_pred -----------CCCCCccccccccCCcccccc
Q 021570 286 -----------VPYPPPSLCLTCQSESVLKLV 306 (311)
Q Consensus 286 -----------~~~~~~tiadgl~~~~~~~~~ 306 (311)
+...+++|..||..|-+.+.+
T Consensus 350 ~~ty~lq~~dGqi~~phsIsAGLdYpGvgPel 381 (477)
T KOG1395|consen 350 VTTYVLQDTDGQIFDPHSISAGLDYPGVGPEL 381 (477)
T ss_pred ceeeeeeccCCccccCCccccCCCCCCCChhH
Confidence 115688999999988877654
No 87
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=90.98 E-value=1.6 Score=37.51 Aligned_cols=121 Identities=13% Similarity=0.066 Sum_probs=67.7
Q ss_pred HHHHHHHHHHcCCeE-EEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCCCCCCcchHhh
Q 021570 148 GIGLAFIAASKGYKL-ILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIH 226 (311)
Q Consensus 148 g~AlA~~aa~~Gi~~-~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G 226 (311)
|..+..+++.+|.++ .-+.+.+.-..-+..+...|-+|.++++.. +...+.+..+.++.|+.-.+..++-+.... -
T Consensus 13 G~~i~~~~~~~g~~~~~rv~g~dl~~~l~~~~~~~~~~ifllG~~~--~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~-~ 89 (172)
T PF03808_consen 13 GMPIVWAARLLGRPLPERVTGSDLFPDLLRRAEQRGKRIFLLGGSE--EVLEKAAANLRRRYPGLRIVGYHHGYFDEE-E 89 (172)
T ss_pred CHHHHHHHHHcCCCCCcccCHHHHHHHHHHHHHHcCCeEEEEeCCH--HHHHHHHHHHHHHCCCeEEEEecCCCCChh-h
Confidence 477899999999887 333333444455566677889999999872 333334445556666655544333333221 2
Q ss_pred HHHHHHHHHHHcCCCCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEe
Q 021570 227 YETTGPEIWEDTRGKVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFV 275 (311)
Q Consensus 227 ~~t~a~Ei~~Ql~~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe 275 (311)
...+..+|- + ..||.|+++.|+---=. .....+...+..-+++|-
T Consensus 90 ~~~i~~~I~-~--~~pdiv~vglG~PkQE~-~~~~~~~~l~~~v~i~vG 134 (172)
T PF03808_consen 90 EEAIINRIN-A--SGPDIVFVGLGAPKQER-WIARHRQRLPAGVIIGVG 134 (172)
T ss_pred HHHHHHHHH-H--cCCCEEEEECCCCHHHH-HHHHHHHHCCCCEEEEEC
Confidence 233333332 2 25999999999865432 222333333433444443
No 88
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=90.64 E-value=4.8 Score=35.58 Aligned_cols=99 Identities=20% Similarity=0.259 Sum_probs=62.0
Q ss_pred EEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCCCC
Q 021570 139 LVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFD 218 (311)
Q Consensus 139 vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~ 218 (311)
+|.+.+|+.|..++.+....+.++++++... +......++..|++++..+-+ -.+.+..+.+ .-...+...+..
T Consensus 2 ~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~-~~~~~~~l~~~g~~vv~~d~~--~~~~l~~al~---g~d~v~~~~~~~ 75 (233)
T PF05368_consen 2 LVTGATGNQGRSVVRALLSAGFSVRALVRDP-SSDRAQQLQALGAEVVEADYD--DPESLVAALK---GVDAVFSVTPPS 75 (233)
T ss_dssp EEETTTSHHHHHHHHHHHHTTGCEEEEESSS-HHHHHHHHHHTTTEEEES-TT---HHHHHHHHT---TCSEEEEESSCS
T ss_pred EEECCccHHHHHHHHHHHhCCCCcEEEEecc-chhhhhhhhcccceEeecccC--CHHHHHHHHc---CCceEEeecCcc
Confidence 6788999999999999999999999998655 455677788899999866643 1334444432 222334444433
Q ss_pred CCcchHhhHHHHHHHHHHHcCCCCCEEEE
Q 021570 219 NPANPKIHYETTGPEIWEDTRGKVDIFIG 247 (311)
Q Consensus 219 n~~~~~~G~~t~a~Ei~~Ql~~~pD~vv~ 247 (311)
++.... ....+ .+.+.+.+ +.++|.
T Consensus 76 ~~~~~~-~~~~l-i~Aa~~ag--Vk~~v~ 100 (233)
T PF05368_consen 76 HPSELE-QQKNL-IDAAKAAG--VKHFVP 100 (233)
T ss_dssp CCCHHH-HHHHH-HHHHHHHT---SEEEE
T ss_pred hhhhhh-hhhhH-HHhhhccc--cceEEE
Confidence 344443 44444 35555543 676653
No 89
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=87.48 E-value=11 Score=38.55 Aligned_cols=52 Identities=23% Similarity=0.162 Sum_probs=41.2
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCC
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSA 191 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~ 191 (311)
++++....|+.|+.+|..-+..|.+++++=. ++++.+.++.+|.+++.-|..
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~---d~~~~~~~~~~g~~~i~GD~~ 469 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIET---SRTRVDELRERGIRAVLGNAA 469 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEEC---CHHHHHHHHHCCCeEEEcCCC
Confidence 5689999999999999999999999877633 356677777778777776654
No 90
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=87.27 E-value=5.7 Score=34.04 Aligned_cols=119 Identities=21% Similarity=0.181 Sum_probs=66.9
Q ss_pred HHHHHHHHHHcCCeEEEEECC-CCCHHHHHHHHhcCCEEEEECCCCChHHHHHHH-HHHHHhCCCceeeCCCCCCcchHh
Q 021570 148 GIGLAFIAASKGYKLILTMPA-SMSLERRVLLKAFGAELVLTDSAKGMKGAVQKA-EEILNSTPNAYMLQQFDNPANPKI 225 (311)
Q Consensus 148 g~AlA~~aa~~Gi~~~vv~p~-~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a-~~~~~~~~~~~~~~~~~n~~~~~~ 225 (311)
|..+.++++.+|.+..--++. +.-..-+..+...+-+|.++++. .+..+.+ ..+.++.|+...+..++.+...+
T Consensus 11 G~~l~~~~~~~~~~~~~r~~g~dl~~~ll~~~~~~~~~v~llG~~---~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~- 86 (171)
T cd06533 11 GIGVVWAARLLGGPLPERVTGSDLMPALLELAAQKGLRVFLLGAK---PEVLEKAAERLRARYPGLKIVGYHHGYFGPE- 86 (171)
T ss_pred cHHHHHHHHHcCCCCCcccCcHHHHHHHHHHHHHcCCeEEEECCC---HHHHHHHHHHHHHHCCCcEEEEecCCCCChh-
Confidence 467889999999883222222 22233445556678999999887 3444444 44556666655544333333332
Q ss_pred hHHHHHHHHHHHcC-CCCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEe
Q 021570 226 HYETTGPEIWEDTR-GKVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFV 275 (311)
Q Consensus 226 G~~t~a~Ei~~Ql~-~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe 275 (311)
... +|++++. ..||.|+++.|+---=. .....++..+..-+++|-
T Consensus 87 ~~~----~i~~~I~~~~pdiv~vglG~PkQE~-~~~~~~~~l~~~v~~~vG 132 (171)
T cd06533 87 EEE----EIIERINASGADILFVGLGAPKQEL-WIARHKDRLPVPVAIGVG 132 (171)
T ss_pred hHH----HHHHHHHHcCCCEEEEECCCCHHHH-HHHHHHHHCCCCEEEEec
Confidence 211 2444443 25999999999865432 223334444444566654
No 91
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=87.21 E-value=11 Score=38.95 Aligned_cols=52 Identities=10% Similarity=0.187 Sum_probs=41.5
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCC
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSA 191 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~ 191 (311)
.+++.+..|..|+.+|..-...|++++++= .++.+.+.++.+|.+++.-|..
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID---~d~~~v~~~~~~g~~v~~GDat 452 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLE---RDISAVNLMRKYGYKVYYGDAT 452 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEE---CCHHHHHHHHhCCCeEEEeeCC
Confidence 468889999999999999999999987773 3466777788888877776654
No 92
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=86.77 E-value=12 Score=38.97 Aligned_cols=52 Identities=17% Similarity=0.241 Sum_probs=44.0
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCC
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSA 191 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~ 191 (311)
.+++.+..|..|+.+|..-...|++++++ +.++.+.+.++.+|.+++.-|..
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvI---D~d~~~v~~~~~~g~~v~~GDat 452 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVL---DHDPDHIETLRKFGMKVFYGDAT 452 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEE---ECCHHHHHHHHhcCCeEEEEeCC
Confidence 56899999999999999999999998887 44567788888899888887765
No 93
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=86.57 E-value=5.5 Score=38.94 Aligned_cols=127 Identities=17% Similarity=0.227 Sum_probs=73.0
Q ss_pred EEeeCcC-hHHHHHHHHHHHcCCeEEEEECC-CCC----HHHHHHHHhcCC-EEEEECCCCChHHHHHHHHHHHHhC---
Q 021570 139 LVEPTSG-NTGIGLAFIAASKGYKLILTMPA-SMS----LERRVLLKAFGA-ELVLTDSAKGMKGAVQKAEEILNST--- 208 (311)
Q Consensus 139 vv~aSsG-N~g~AlA~~aa~~Gi~~~vv~p~-~~~----~~k~~~l~~~GA-~V~~v~~~~~~~~a~~~a~~~~~~~--- 208 (311)
|...|+| .+...+.+.....+++++.|.-. ..+ ..-.+....+|| +++.+|....|. .+.+....+.+
T Consensus 1 VLAySGGLDTS~~l~~L~e~~~~~Via~~aDlGq~~~d~~~i~~kA~~~Ga~~~~vvD~r~ef~--~~~i~~aI~anA~Y 78 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWLKEEGGYEVIAVTADLGQPDEDLEAIEEKALKLGASKHIVVDARDEFA--EDYIFPAIKANALY 78 (388)
T ss_dssp EEE--SSHHHHHHHHHHHHTTTEEEEEEEEESSST-S-HHHHHHHHHHHT-SEEEEEE-HHHHH--HHTHHHHHHTT--B
T ss_pred CeeeCCChHHHHHHHHHHhhcCceEEEEEEECCCcHHHHHHHHHHHHhcCCceeeecchHHHHH--HHHHHHHHHHHHHh
Confidence 3456777 77788888888888999888733 333 223345677899 999998642222 12222222321
Q ss_pred CCceeeCCCCCCcchHhhHHHHHHHHHHHcCCCCCEEEE-ccChhhHHHHHHHHHHhcCCCCEEEE
Q 021570 209 PNAYMLQQFDNPANPKIHYETTGPEIWEDTRGKVDIFIG-GIGTGGTISGAGRYLKEKNPNIKVII 273 (311)
Q Consensus 209 ~~~~~~~~~~n~~~~~~G~~t~a~Ei~~Ql~~~pD~vv~-pvG~Gg~~~Gi~~~lk~~~p~~~iig 273 (311)
.+.|++.. ...++. ......|++++.+ .++|.- ++|-|--..-.-.+++.+.|+.+|++
T Consensus 79 eg~YpL~t--sl~Rpl--Ia~~~v~~A~~~g--a~~vaHG~TgkGNDqvRFe~~~~al~P~l~via 138 (388)
T PF00764_consen 79 EGRYPLST--SLARPL--IAKKLVEVAREEG--ADAVAHGCTGKGNDQVRFELSIRALAPELKVIA 138 (388)
T ss_dssp TTTB--CC--CCHHHH--HHHHHHHHHHHHT---SEEE----TTSSHHHHHHHHHHHHSTTSEEE-
T ss_pred CCCccccc--cchHHH--HHHHHHHHHHHcC--CeEEeccCCcCCCchhHHHHHHHHhCcCCcEec
Confidence 23333321 223332 2334457777764 688887 56889999999999999999999885
No 94
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=86.10 E-value=15 Score=29.77 Aligned_cols=97 Identities=18% Similarity=0.203 Sum_probs=54.1
Q ss_pred HHHHHHHcCCeEEEEECC-CCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCCCCCCcchHhhHHH
Q 021570 151 LAFIAASKGYKLILTMPA-SMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYET 229 (311)
Q Consensus 151 lA~~aa~~Gi~~~vv~p~-~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~t 229 (311)
|+...+..+.+..|+... .............+.+++.-.+.. +.+++..|.+.+.+......+...+.|..-. .+-
T Consensus 2 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Q~g~d-LG~Rm~~a~~~~~~g~~~vvliGsD~P~l~~-~~l- 78 (122)
T PF09837_consen 2 LAALAQADGADVVLAYTPDGDHAAFRQLWLPSGFSFFPQQGGD-LGERMANAFQQAARGYEPVVLIGSDCPDLTP-DDL- 78 (122)
T ss_dssp ------TSSSEEEEEE----TTHHHHHHHH-TTSEEEE--SSS-HHHHHHHHHHHHHTT-SEEEEE-SS-TT--H-HHH-
T ss_pred ccccccCCCcCEEEEEcCCccHHHHhccccCCCCEEeecCCCC-HHHHHHHHHHHHHcCCCcEEEEcCCCCCCCH-HHH-
Confidence 345566778888888844 444444333556677777655443 8899999888774444567777888888764 222
Q ss_pred HHHHHHHHcCCCCCEEEEccChhh
Q 021570 230 TGPEIWEDTRGKVDIFIGGIGTGG 253 (311)
Q Consensus 230 ~a~Ei~~Ql~~~pD~vv~pvG~Gg 253 (311)
.+.++.+. +-|.|+.|+--||
T Consensus 79 --~~A~~~L~-~~d~VlgPa~DGG 99 (122)
T PF09837_consen 79 --EQAFEALQ-RHDVVLGPAEDGG 99 (122)
T ss_dssp --HHHHHHTT-T-SEEEEEBTTSS
T ss_pred --HHHHHHhc-cCCEEEeeccCCC
Confidence 34455554 4599999998887
No 95
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=86.03 E-value=9 Score=36.16 Aligned_cols=59 Identities=24% Similarity=0.371 Sum_probs=42.0
Q ss_pred HHHcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEE
Q 021570 126 AEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLT 188 (311)
Q Consensus 126 A~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v 188 (311)
+.....+.+|++.+|.+ .|..|.+++.+|+.+|.+++++ +.++.|+..++.+|++.+..
T Consensus 158 a~~~~~~~~g~~VlV~G-~G~vG~~a~~~a~~~G~~vi~~---~~~~~~~~~~~~~Ga~~~i~ 216 (349)
T TIGR03201 158 AAVQAGLKKGDLVIVIG-AGGVGGYMVQTAKAMGAAVVAI---DIDPEKLEMMKGFGADLTLN 216 (349)
T ss_pred HHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEE---cCCHHHHHHHHHhCCceEec
Confidence 34445567775555555 4999999999999999974433 33567888889999976543
No 96
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=85.75 E-value=5.5 Score=37.69 Aligned_cols=54 Identities=17% Similarity=0.241 Sum_probs=41.9
Q ss_pred CCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEE
Q 021570 132 ITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELV 186 (311)
Q Consensus 132 ~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~ 186 (311)
+.+|++.+|. .+|..|...+..|+.+|.+++++.....++.|++.++.+|++.+
T Consensus 170 ~~~g~~vlI~-G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v 223 (355)
T cd08230 170 TWNPRRALVL-GAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYV 223 (355)
T ss_pred cCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEe
Confidence 3456555555 57999999999999999986666555557889999999999964
No 97
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=84.42 E-value=13 Score=34.31 Aligned_cols=60 Identities=25% Similarity=0.284 Sum_probs=44.9
Q ss_pred HcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECC
Q 021570 128 QKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDS 190 (311)
Q Consensus 128 ~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~ 190 (311)
+.+.+.+|+..+|.+.+|..|.++...|+.+|.+++++. .+..+.+.++.+|++-+....
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~---~s~~~~~~l~~~Ga~~vi~~~ 196 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCA---GSDDKVAWLKELGFDAVFNYK 196 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHcCCCEEEeCC
Confidence 456677776666777789999999999999999855443 345788888899997555433
No 98
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=83.63 E-value=14 Score=35.97 Aligned_cols=58 Identities=21% Similarity=0.342 Sum_probs=43.1
Q ss_pred HHcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEE
Q 021570 127 EQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVL 187 (311)
Q Consensus 127 ~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~ 187 (311)
.+...+.+|++.+| ..+|..|..++..|+.+|.+.+++. +..+.|++..+.+|++.+.
T Consensus 178 ~~~~~~~~g~~VlV-~G~G~iG~~aiqlAk~~Ga~~vi~~--d~~~~r~~~a~~~Ga~~v~ 235 (393)
T TIGR02819 178 AVTAGVGPGSTVYI-AGAGPVGLAAAASAQLLGAAVVIVG--DLNPARLAQARSFGCETVD 235 (393)
T ss_pred HHhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCceEEEe--CCCHHHHHHHHHcCCeEEe
Confidence 34455677755444 7779999999999999999876643 2346789999999998543
No 99
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=83.41 E-value=13 Score=32.75 Aligned_cols=68 Identities=24% Similarity=0.196 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHHc--CCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHH-hcCCEEE
Q 021570 116 DRIGFSMIADAEQK--GLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLK-AFGAELV 186 (311)
Q Consensus 116 dRga~~~v~~A~~~--G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~-~~GA~V~ 186 (311)
-+|..+.+..+.+. |......++++.-..||.|..+|......|.+++++ . ....++..+. .+|++.+
T Consensus 6 g~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~-D--~~~~~~~~~~~~~g~~~v 76 (200)
T cd01075 6 AYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVA-D--INEEAVARAAELFGATVV 76 (200)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE-c--CCHHHHHHHHHHcCCEEE
Confidence 47788888887765 222322367888888999999999999999988854 2 3345555543 3477643
No 100
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=83.35 E-value=8.5 Score=35.15 Aligned_cols=53 Identities=26% Similarity=0.317 Sum_probs=39.7
Q ss_pred CCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEE
Q 021570 132 ITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVL 187 (311)
Q Consensus 132 ~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~ 187 (311)
..+|++ |+....|..|..++..|+.+|.+.++++ +.++.|++.++.+|++.+.
T Consensus 118 ~~~g~~-VlV~G~G~vG~~~~~~ak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~i 170 (280)
T TIGR03366 118 DLKGRR-VLVVGAGMLGLTAAAAAAAAGAARVVAA--DPSPDRRELALSFGATALA 170 (280)
T ss_pred CCCCCE-EEEECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCcEec
Confidence 346644 4445679999999999999999855555 4467888899999997544
No 101
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=82.07 E-value=12 Score=35.43 Aligned_cols=59 Identities=27% Similarity=0.461 Sum_probs=45.4
Q ss_pred HcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEEC
Q 021570 128 QKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTD 189 (311)
Q Consensus 128 ~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~ 189 (311)
+.+.+++|++.+|.+.+|.-|..+...|+.+|...++... +..|.+.++.+||+.+..-
T Consensus 136 ~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~---s~~k~~~~~~lGAd~vi~y 194 (326)
T COG0604 136 DRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVS---SSEKLELLKELGADHVINY 194 (326)
T ss_pred HhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEec---CHHHHHHHHhcCCCEEEcC
Confidence 3566777888889999999999999999999994444332 2466669999999876653
No 102
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=81.98 E-value=34 Score=34.77 Aligned_cols=51 Identities=20% Similarity=0.140 Sum_probs=42.1
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECC
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDS 190 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~ 190 (311)
.+|+.-..|..|.+.+..|+.+|-+++++ +..+.++++.+.+||+.+.++.
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~---D~~~~rle~aeslGA~~v~i~~ 216 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAF---DTRPEVAEQVESMGAEFLELDF 216 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEE---eCCHHHHHHHHHcCCeEEEecc
Confidence 57899999999999999999999864443 4568899999999999665543
No 103
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=80.62 E-value=10 Score=36.48 Aligned_cols=63 Identities=27% Similarity=0.302 Sum_probs=50.1
Q ss_pred HHHHcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCC
Q 021570 125 DAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSA 191 (311)
Q Consensus 125 ~A~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~ 191 (311)
+++.+..+.|| +.|.....|-.|.-...+|+.+|.++++| +.++.|++..+.+||+.+....+
T Consensus 157 ~alk~~~~~pG-~~V~I~G~GGlGh~avQ~Aka~ga~Via~---~~~~~K~e~a~~lGAd~~i~~~~ 219 (339)
T COG1064 157 RALKKANVKPG-KWVAVVGAGGLGHMAVQYAKAMGAEVIAI---TRSEEKLELAKKLGADHVINSSD 219 (339)
T ss_pred eehhhcCCCCC-CEEEEECCcHHHHHHHHHHHHcCCeEEEE---eCChHHHHHHHHhCCcEEEEcCC
Confidence 45666677888 56777777788888888999999888887 45678999999999999887653
No 104
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=80.61 E-value=6.5 Score=37.09 Aligned_cols=61 Identities=28% Similarity=0.219 Sum_probs=45.2
Q ss_pred HcCCCCCCCceEEeeCc---ChHHHHHHHHHHHcCCeEEEEECCC--CCHHHHHHHHhcCCEEEEECC
Q 021570 128 QKGLITPGKSILVEPTS---GNTGIGLAFIAASKGYKLILTMPAS--MSLERRVLLKAFGAELVLTDS 190 (311)
Q Consensus 128 ~~G~~~~g~~~vv~aSs---GN~g~AlA~~aa~~Gi~~~vv~p~~--~~~~k~~~l~~~GA~V~~v~~ 190 (311)
..|.+. | .+|+-... +|.+.|+..+++++|++++++.|+. .++..+..++..|++|...+.
T Consensus 144 ~~g~l~-g-~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d 209 (301)
T TIGR00670 144 EFGRLD-G-LKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETES 209 (301)
T ss_pred HhCCCC-C-CEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECC
Confidence 346443 3 34444444 6999999999999999999999986 455666777778998877653
No 105
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=79.60 E-value=18 Score=33.71 Aligned_cols=59 Identities=25% Similarity=0.404 Sum_probs=43.6
Q ss_pred HHHcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEE
Q 021570 126 AEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLT 188 (311)
Q Consensus 126 A~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v 188 (311)
+.+.+.+.+|++.+|.+.+|..|.+++..|+.+|.+++++... . ++..++.+|++.+..
T Consensus 169 ~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~---~-~~~~~~~~g~~~~~~ 227 (350)
T cd08274 169 MLERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGA---A-KEEAVRALGADTVIL 227 (350)
T ss_pred HHhhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCc---h-hhHHHHhcCCeEEEe
Confidence 3455667777677777777999999999999999996555432 2 677778899975443
No 106
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=79.53 E-value=18 Score=31.33 Aligned_cols=97 Identities=14% Similarity=0.170 Sum_probs=53.5
Q ss_pred HHHHHHHHHHcCCeEEEEECC-CCCHHHHHHHHhcCCEEEEECCCCChHHHHHH-HHHHHHhCCCceeeCCCCCCcchHh
Q 021570 148 GIGLAFIAASKGYKLILTMPA-SMSLERRVLLKAFGAELVLTDSAKGMKGAVQK-AEEILNSTPNAYMLQQFDNPANPKI 225 (311)
Q Consensus 148 g~AlA~~aa~~Gi~~~vv~p~-~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~-a~~~~~~~~~~~~~~~~~n~~~~~~ 225 (311)
|..+.++++.+|.+..--++. +.-..-.......|..|.++++. .+..+. +..+.++.|+.-.+. ++.++..+
T Consensus 13 G~~iv~~~r~~g~~~~~Rv~G~dl~~~l~~~~~~~~~~vfllG~~---~~v~~~~~~~l~~~yP~l~i~g-~~g~f~~~- 87 (177)
T TIGR00696 13 GIGVVWGLKLLGYPQQSRVAGPDLMEELCQRAGKEKLPIFLYGGK---PDVLQQLKVKLIKEYPKLKIVG-AFGPLEPE- 87 (177)
T ss_pred cHHHHHHHHHcCCCCCCccChHHHHHHHHHHHHHcCCeEEEECCC---HHHHHHHHHHHHHHCCCCEEEE-ECCCCChH-
Confidence 367888999998764222221 11122334455678899999887 344444 444555566654432 22222221
Q ss_pred hHHHHHHHHHHHcCC-CCCEEEEccChhh
Q 021570 226 HYETTGPEIWEDTRG-KVDIFIGGIGTGG 253 (311)
Q Consensus 226 G~~t~a~Ei~~Ql~~-~pD~vv~pvG~Gg 253 (311)
-. .+|++++.. .||.|+++.|+--
T Consensus 88 ~~----~~i~~~I~~s~~dil~VglG~Pk 112 (177)
T TIGR00696 88 ER----KAALAKIARSGAGIVFVGLGCPK 112 (177)
T ss_pred HH----HHHHHHHHHcCCCEEEEEcCCcH
Confidence 11 234444432 4999999998743
No 107
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=79.50 E-value=8.1 Score=36.87 Aligned_cols=60 Identities=22% Similarity=0.356 Sum_probs=43.4
Q ss_pred HHcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECC
Q 021570 127 EQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDS 190 (311)
Q Consensus 127 ~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~ 190 (311)
++.|. .||+..-+..-.| .|.---.+|+++|++++++-. .+..|.+.++.+||+......
T Consensus 175 k~~g~-~pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~--~~~kkeea~~~LGAd~fv~~~ 234 (360)
T KOG0023|consen 175 KRSGL-GPGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVIST--SSKKKEEAIKSLGADVFVDST 234 (360)
T ss_pred HHcCC-CCCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeC--CchhHHHHHHhcCcceeEEec
Confidence 34454 5885544444445 888888899999999999843 234677788999999987765
No 108
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=79.24 E-value=25 Score=31.55 Aligned_cols=59 Identities=29% Similarity=0.318 Sum_probs=38.8
Q ss_pred HHHHHHHcCCCCCCCceEEee-CcC---hHHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhcCC
Q 021570 122 MIADAEQKGLITPGKSILVEP-TSG---NTGIGLAFIAASKGYKLILTMPASMS-LERRVLLKAFGA 183 (311)
Q Consensus 122 ~v~~A~~~G~~~~g~~~vv~a-SsG---N~g~AlA~~aa~~Gi~~~vv~p~~~~-~~k~~~l~~~GA 183 (311)
.+..|+..|-- .+.+|++ |.| -+.+|||.+|++-|=+.+.++|+..+ ..-...|..+|.
T Consensus 31 EfISAlAAG~n---AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~ 94 (218)
T PF07279_consen 31 EFISALAAGWN---AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL 94 (218)
T ss_pred HHHHHHhcccc---ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc
Confidence 34456666642 2445555 554 37899999999999999999998654 233444544553
No 109
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=79.06 E-value=14 Score=29.25 Aligned_cols=39 Identities=33% Similarity=0.338 Sum_probs=22.6
Q ss_pred HHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEEC
Q 021570 148 GIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTD 189 (311)
Q Consensus 148 g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~ 189 (311)
|......|+.+|.+++++.+ .+.|++.++.+||+.+...
T Consensus 3 G~~a~q~ak~~G~~vi~~~~---~~~k~~~~~~~Ga~~~~~~ 41 (130)
T PF00107_consen 3 GLMAIQLAKAMGAKVIATDR---SEEKLELAKELGADHVIDY 41 (130)
T ss_dssp HHHHHHHHHHTTSEEEEEES---SHHHHHHHHHTTESEEEET
T ss_pred HHHHHHHHHHcCCEEEEEEC---CHHHHHHHHhhcccccccc
Confidence 55566666777744444432 4556666777776555444
No 110
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=78.79 E-value=37 Score=30.39 Aligned_cols=92 Identities=10% Similarity=0.096 Sum_probs=60.0
Q ss_pred HHHHHHHHcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHH
Q 021570 121 SMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQK 200 (311)
Q Consensus 121 ~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~ 200 (311)
.++....+.|. ...=++-.+=....++...++.++ ++.|=.-.-.+++..++....||+.++.++-. .+
T Consensus 29 ~~a~Ali~gGi----~~IEITl~sp~a~e~I~~l~~~~p-~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~~~--~e---- 97 (211)
T COG0800 29 PLAKALIEGGI----PAIEITLRTPAALEAIRALAKEFP-EALIGAGTVLNPEQARQAIAAGAQFIVSPGLN--PE---- 97 (211)
T ss_pred HHHHHHHHcCC----CeEEEecCCCCHHHHHHHHHHhCc-ccEEccccccCHHHHHHHHHcCCCEEECCCCC--HH----
Confidence 33344445554 122244567778888888899888 55554444568888999999999999998752 22
Q ss_pred HHHHHHhCCCceeeCCCCCCcchH
Q 021570 201 AEEILNSTPNAYMLQQFDNPANPK 224 (311)
Q Consensus 201 a~~~~~~~~~~~~~~~~~n~~~~~ 224 (311)
..+.+.+. +..|+..-.+|.-+.
T Consensus 98 v~~~a~~~-~ip~~PG~~TptEi~ 120 (211)
T COG0800 98 VAKAANRY-GIPYIPGVATPTEIM 120 (211)
T ss_pred HHHHHHhC-CCcccCCCCCHHHHH
Confidence 23334444 677777776666553
No 111
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=78.40 E-value=26 Score=32.44 Aligned_cols=58 Identities=24% Similarity=0.357 Sum_probs=44.3
Q ss_pred HcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEE
Q 021570 128 QKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLT 188 (311)
Q Consensus 128 ~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v 188 (311)
+.+.+.+|+..+|.+.+|-.|.+++..|+.+|.++++... +..|...++.+|++.++.
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~---s~~~~~~~~~lGa~~vi~ 189 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAG---SDEKVAYLKKLGFDVAFN 189 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEEe
Confidence 4566777766667676899999999999999998655433 456888889999975544
No 112
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=78.22 E-value=16 Score=34.47 Aligned_cols=89 Identities=24% Similarity=0.274 Sum_probs=64.0
Q ss_pred eEEEeeCCCCC-----CCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCC-HH
Q 021570 100 NIAAKLEIMEP-----CCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMS-LE 173 (311)
Q Consensus 100 ~l~vK~E~~nP-----tGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~-~~ 173 (311)
+-++|.+..-| |-+.---.|+-|+.+..+.. +|+..|--+..+--|+++--.|+.+||+.+=++..... .+
T Consensus 124 ~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~---~GD~vIQNganS~VG~~ViQlaka~GiktinvVRdR~~iee 200 (354)
T KOG0025|consen 124 SDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLN---KGDSVIQNGANSGVGQAVIQLAKALGIKTINVVRDRPNIEE 200 (354)
T ss_pred cceEEcCCcCChhhhheeccCchHHHHHHHHHHhcC---CCCeeeecCcccHHHHHHHHHHHHhCcceEEEeecCccHHH
Confidence 56788888655 55666666788888776543 34443444455677888889999999999999866443 44
Q ss_pred HHHHHHhcCCEEEEECCC
Q 021570 174 RRVLLKAFGAELVLTDSA 191 (311)
Q Consensus 174 k~~~l~~~GA~V~~v~~~ 191 (311)
-..+|+.+||+-++.+..
T Consensus 201 l~~~Lk~lGA~~ViTeee 218 (354)
T KOG0025|consen 201 LKKQLKSLGATEVITEEE 218 (354)
T ss_pred HHHHHHHcCCceEecHHH
Confidence 556889999999988743
No 113
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=78.10 E-value=22 Score=33.86 Aligned_cols=58 Identities=19% Similarity=0.376 Sum_probs=41.9
Q ss_pred HcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEE
Q 021570 128 QKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLT 188 (311)
Q Consensus 128 ~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v 188 (311)
+...+.+|++.+|. .+|-.|..++..|+.+|.+.++.+ +.++.|++.++.+|++.++.
T Consensus 185 ~~~~i~~g~~VlV~-G~G~vG~~a~~lak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~i~ 242 (371)
T cd08281 185 NTAGVRPGQSVAVV-GLGGVGLSALLGAVAAGASQVVAV--DLNEDKLALARELGATATVN 242 (371)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEE--cCCHHHHHHHHHcCCceEeC
Confidence 44556777665665 479999999999999999544443 23567888889999975543
No 114
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=77.95 E-value=28 Score=32.58 Aligned_cols=59 Identities=25% Similarity=0.375 Sum_probs=43.6
Q ss_pred HHcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEE
Q 021570 127 EQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLT 188 (311)
Q Consensus 127 ~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v 188 (311)
.+...+.+|+..++ ..+|..|.++...|+.+|.+.++.+.. .+.|...++.+|++.++.
T Consensus 167 ~~~~~~~~g~~vlI-~g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~v~~ 225 (350)
T cd08256 167 VDRANIKFDDVVVL-AGAGPLGLGMIGAARLKNPKKLIVLDL--KDERLALARKFGADVVLN 225 (350)
T ss_pred HHhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCcEEEEEcC--CHHHHHHHHHcCCcEEec
Confidence 35566677755444 777999999999999999887666554 367778888899876543
No 115
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=77.81 E-value=33 Score=32.42 Aligned_cols=58 Identities=22% Similarity=0.251 Sum_probs=42.3
Q ss_pred HHcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEE
Q 021570 127 EQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVL 187 (311)
Q Consensus 127 ~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~ 187 (311)
.+.+.+.+|++.+|. .+|-.|.+++..|+.+|.+.++.+. .++.|++.++.+|++-++
T Consensus 169 ~~~~~~~~g~~VlV~-G~g~vG~~a~~~ak~~G~~~Vi~~~--~~~~~~~~~~~~Ga~~~i 226 (358)
T TIGR03451 169 VNTGGVKRGDSVAVI-GCGGVGDAAIAGAALAGASKIIAVD--IDDRKLEWAREFGATHTV 226 (358)
T ss_pred HhccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHcCCceEE
Confidence 345567777666665 5699999999999999997455443 346788888999996544
No 116
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=77.71 E-value=28 Score=32.46 Aligned_cols=57 Identities=25% Similarity=0.279 Sum_probs=43.5
Q ss_pred HcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHh-cCCEEEE
Q 021570 128 QKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKA-FGAELVL 187 (311)
Q Consensus 128 ~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~-~GA~V~~ 187 (311)
+.+.+.+|+..+|.+.+|..|.+++..|+.+|.++++... +..|.+.++. +|++-+.
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~---~~~~~~~~~~~lGa~~vi 202 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAG---SDEKVDLLKNKLGFDDAF 202 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHhcCCceeE
Confidence 4456778877777777899999999999999998555432 3577888887 9986544
No 117
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=77.24 E-value=4.7 Score=33.88 Aligned_cols=39 Identities=23% Similarity=0.221 Sum_probs=31.5
Q ss_pred EEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHh
Q 021570 139 LVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKA 180 (311)
Q Consensus 139 vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~ 180 (311)
|..-.+||+|.|+|...+..|.+++++.++. ...+.++.
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~---~~~~~i~~ 40 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDE---EQIEEINE 40 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCH---HHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccH---HHHHHHHH
Confidence 6778999999999999999999999997754 44444443
No 118
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=76.97 E-value=23 Score=30.35 Aligned_cols=105 Identities=13% Similarity=0.104 Sum_probs=68.2
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCC
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQ 216 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~ 216 (311)
++|..-..|+-|+++|..++.+|++++++-|...+.. .....|.+. .+ +++.++. . +...+.-
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~---~~~~~~~~~--~~----l~ell~~-------a-Div~~~~ 99 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEE---GADEFGVEY--VS----LDELLAQ-------A-DIVSLHL 99 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHH---HHHHTTEEE--SS----HHHHHHH---------SEEEE-S
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhh---hccccccee--ee----hhhhcch-------h-hhhhhhh
Confidence 6788889999999999999999999999877653322 333444422 11 4443322 2 3343332
Q ss_pred CCCCcchHhhHHHHHHHHHHHcCCCCCEEEEccChhhHH--HHHHHHHHh
Q 021570 217 FDNPANPKIHYETTGPEIWEDTRGKVDIFIGGIGTGGTI--SGAGRYLKE 264 (311)
Q Consensus 217 ~~n~~~~~~G~~t~a~Ei~~Ql~~~pD~vv~pvG~Gg~~--~Gi~~~lk~ 264 (311)
-.++.+ ..-+..|.+++++ ++++++-+|-|+.+ ..+..++++
T Consensus 100 plt~~T----~~li~~~~l~~mk--~ga~lvN~aRG~~vde~aL~~aL~~ 143 (178)
T PF02826_consen 100 PLTPET----RGLINAEFLAKMK--PGAVLVNVARGELVDEDALLDALES 143 (178)
T ss_dssp SSSTTT----TTSBSHHHHHTST--TTEEEEESSSGGGB-HHHHHHHHHT
T ss_pred cccccc----ceeeeeeeeeccc--cceEEEeccchhhhhhhHHHHHHhh
Confidence 223322 2345678888984 79999999999987 667777775
No 119
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=76.93 E-value=70 Score=30.51 Aligned_cols=52 Identities=27% Similarity=0.293 Sum_probs=44.1
Q ss_pred eEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHh-cCCEEEEECCC
Q 021570 138 ILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKA-FGAELVLTDSA 191 (311)
Q Consensus 138 ~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~-~GA~V~~v~~~ 191 (311)
+++....|.-|+..+..++.+|...+|++ +..+.|++..+. .|++++.....
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~--d~~~~Rl~~A~~~~g~~~~~~~~~ 223 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVV--DRSPERLELAKEAGGADVVVNPSE 223 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEe--CCCHHHHHHHHHhCCCeEeecCcc
Confidence 79999999999999999999999999988 556888998877 77777766543
No 120
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=76.55 E-value=61 Score=32.59 Aligned_cols=122 Identities=15% Similarity=0.128 Sum_probs=74.9
Q ss_pred HHHHHHHcCCeEEEEE-----------CCCCCHHHHHHHHhcCCEEEEECCCCC----hHHHHHHHHHHHHhCCCce---
Q 021570 151 LAFIAASKGYKLILTM-----------PASMSLERRVLLKAFGAELVLTDSAKG----MKGAVQKAEEILNSTPNAY--- 212 (311)
Q Consensus 151 lA~~aa~~Gi~~~vv~-----------p~~~~~~k~~~l~~~GA~V~~v~~~~~----~~~a~~~a~~~~~~~~~~~--- 212 (311)
+..+|+..|+++.+.. |..+....+......|++.+....+.. -.++++...+++++-+..+
T Consensus 262 ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~G~yP~~~v~~m~~I~~~~E~~~~~~ 341 (473)
T TIGR01064 262 MIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKGKYPVEAVKMMAKIAKEAEKALAYL 341 (473)
T ss_pred HHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhcCCCHHHHHHHHHHHHHHHHhccchh
Confidence 4567889999988764 333456677777778999888765431 2345555544443221111
Q ss_pred --eeCCCC-CC--cchHhhHHHHHHHHHHHcCCCCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCC
Q 021570 213 --MLQQFD-NP--ANPKIHYETTGPEIWEDTRGKVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFI 278 (311)
Q Consensus 213 --~~~~~~-n~--~~~~~G~~t~a~Ei~~Ql~~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~ 278 (311)
|-.... .. ..........+.++.+.++ .++||+.+-+|.++--++++ .|.+.|+++.|..
T Consensus 342 ~~~~~~~~~~~~~~~~~~~ia~~a~~~a~~~~--akaIVv~T~SG~TA~~vSr~----rp~~PIiAvT~~~ 406 (473)
T TIGR01064 342 TNFNDRKNSDPKPSTITEAIALSAVEAAEKLD--AKAIVVLTESGRTARLLSKY----RPNAPIIAVTPNE 406 (473)
T ss_pred hhhhhhhcccccCCChHHHHHHHHHHHHhhcC--CCEEEEEcCChHHHHHHHhh----CCCCCEEEEcCCH
Confidence 101100 00 0111234445566777763 78999999999998877664 5888899998865
No 121
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=76.18 E-value=48 Score=30.80 Aligned_cols=60 Identities=28% Similarity=0.407 Sum_probs=41.9
Q ss_pred HHHcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEE
Q 021570 126 AEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLT 188 (311)
Q Consensus 126 A~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v 188 (311)
+.+...+.+|+..+|. .+|-.|.+++..|+.+|.+-++++. .++.|++.++.+|++.+..
T Consensus 155 ~l~~~~~~~g~~vlV~-G~G~vG~~~~~~ak~~G~~~vi~~~--~~~~~~~~~~~~ga~~~i~ 214 (339)
T cd08239 155 ALRRVGVSGRDTVLVV-GAGPVGLGALMLARALGAEDVIGVD--PSPERLELAKALGADFVIN 214 (339)
T ss_pred HHHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHhCCCEEEc
Confidence 3444456677565555 5699999999999999998333332 3467788888999965543
No 122
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=76.03 E-value=38 Score=31.45 Aligned_cols=60 Identities=28% Similarity=0.400 Sum_probs=41.8
Q ss_pred HcCCCCCC--CceEEeeCcChHHHHHHHHHHHcCC-eEEEEECCCCCHHHHHHHHh-cCCEEEEECC
Q 021570 128 QKGLITPG--KSILVEPTSGNTGIGLAFIAASKGY-KLILTMPASMSLERRVLLKA-FGAELVLTDS 190 (311)
Q Consensus 128 ~~G~~~~g--~~~vv~aSsGN~g~AlA~~aa~~Gi-~~~vv~p~~~~~~k~~~l~~-~GA~V~~v~~ 190 (311)
+.+.+.+| +..+|.+.+|..|.++...|+.+|. +++++.. ++.|.+.++. +|++-+....
T Consensus 146 ~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~---s~~~~~~~~~~lGa~~vi~~~ 209 (345)
T cd08293 146 EKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICG---SDEKCQLLKSELGFDAAINYK 209 (345)
T ss_pred HhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcC---CHHHHHHHHHhcCCcEEEECC
Confidence 34455554 5666767779999999999999998 5555433 3567777765 9997655443
No 123
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=75.95 E-value=22 Score=29.14 Aligned_cols=68 Identities=22% Similarity=0.240 Sum_probs=45.9
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHH----HHHHHHhcCCEEEEECCCCChHHHHHHHHHH
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLE----RRVLLKAFGAELVLTDSAKGMKGAVQKAEEI 204 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~----k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~ 204 (311)
..+|++.++.-|.++|..-...|-..++++..+.+.. ....++..|.++.....|..-.+.++.+.+.
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 73 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEE 73 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccccccccccccccccccccccccc
Confidence 4588899999999999999988877777776552222 2345567789888776553334444444433
No 124
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=75.68 E-value=45 Score=32.79 Aligned_cols=56 Identities=21% Similarity=0.214 Sum_probs=37.2
Q ss_pred CCCCCchhhHHHHHHHHHHHHcCCCCCC-CceEEeeCcChHHHH--HHHHHHHcCCeEEEEE
Q 021570 108 MEPCCSVKDRIGFSMIADAEQKGLITPG-KSILVEPTSGNTGIG--LAFIAASKGYKLILTM 166 (311)
Q Consensus 108 ~nPtGS~KdRga~~~v~~A~~~G~~~~g-~~~vv~aSsGN~g~A--lA~~aa~~Gi~~~vv~ 166 (311)
-+|.|-- +....+|.+.+.+|.+..| +..+|++.++..|.| +|.+. ..|.+++++.
T Consensus 15 ~hp~gc~--~~v~~qi~~~~~~~~~~~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~ 73 (398)
T PRK13656 15 AHPVGCE--ANVKEQIEYVKAQGPIANGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVF 73 (398)
T ss_pred CCCHHHH--HHHHHHHHHHHhcCCcCCCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEe
Confidence 3455543 3345677788888877443 556777777777777 56666 6888877764
No 125
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=75.62 E-value=34 Score=32.06 Aligned_cols=59 Identities=27% Similarity=0.366 Sum_probs=41.8
Q ss_pred HHcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEE
Q 021570 127 EQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLT 188 (311)
Q Consensus 127 ~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v 188 (311)
.+...+.+|+..+|. .+|..|.+++..|+.+|.+.++++. .+..+...++.+|++.+..
T Consensus 165 l~~~~~~~g~~vlI~-g~g~vG~~a~q~a~~~G~~~v~~~~--~~~~~~~~~~~~ga~~~i~ 223 (351)
T cd08233 165 VRRSGFKPGDTALVL-GAGPIGLLTILALKAAGASKIIVSE--PSEARRELAEELGATIVLD 223 (351)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHhCCCEEEC
Confidence 345556677555555 4689999999999999995444443 3566777888899976554
No 126
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=75.49 E-value=7 Score=37.39 Aligned_cols=88 Identities=22% Similarity=0.224 Sum_probs=54.1
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCC-CChHHHHHHHHHHHHhCC-Cceee
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSA-KGMKGAVQKAEEILNSTP-NAYML 214 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~-~~~~~a~~~a~~~~~~~~-~~~~~ 214 (311)
..++..++|..|.-+|+.+...+-.-.|++|.-+...-...+...|++++++|-+ .++.=..+...+...++. -.+.+
T Consensus 41 ~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~~~G~~pv~~Di~~~~~~id~~~~~~~i~~~t~ai~~~ 120 (363)
T PF01041_consen 41 KYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATASAILWAGAEPVFVDIDPETLNIDPEALEKAITPKTKAILVV 120 (363)
T ss_dssp SEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHHHHHHHTT-EEEEE-BETTTSSB-HHHHHHHHHTTEEEEEEE
T ss_pred CeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHHHHHHHhccEEEEEeccCCcCCcCHHHHHHHhccCccEEEEe
Confidence 5788899999999999998444434788899988888899999999999999865 222111222233333222 23455
Q ss_pred CCCCCCcchH
Q 021570 215 QQFDNPANPK 224 (311)
Q Consensus 215 ~~~~n~~~~~ 224 (311)
+.++++..+.
T Consensus 121 h~~G~~~d~~ 130 (363)
T PF01041_consen 121 HLFGNPADMD 130 (363)
T ss_dssp -GGGB---HH
T ss_pred cCCCCcccHH
Confidence 6666766654
No 127
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=75.48 E-value=38 Score=32.02 Aligned_cols=58 Identities=22% Similarity=0.257 Sum_probs=43.0
Q ss_pred HcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHH-hcCCEEEEE
Q 021570 128 QKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLK-AFGAELVLT 188 (311)
Q Consensus 128 ~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~-~~GA~V~~v 188 (311)
+.+.+.+|+..+|.+.+|-.|..+...|+.+|.++++.. .+..|...++ .+|++-+.-
T Consensus 152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~---~~~~k~~~~~~~lGa~~vi~ 210 (348)
T PLN03154 152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSA---GSSQKVDLLKNKLGFDEAFN 210 (348)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEc---CCHHHHHHHHHhcCCCEEEE
Confidence 346677786666777779999999999999999854432 3456778776 799976554
No 128
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=74.92 E-value=15 Score=26.80 Aligned_cols=49 Identities=24% Similarity=0.207 Sum_probs=37.7
Q ss_pred EEeeCcChHHHHHHHHHHHcCCeEEEEECCCC-----CHH----HHHHHHhcCCEEEE
Q 021570 139 LVEPTSGNTGIGLAFIAASKGYKLILTMPASM-----SLE----RRVLLKAFGAELVL 187 (311)
Q Consensus 139 vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~-----~~~----k~~~l~~~GA~V~~ 187 (311)
++.-.+|..|.-+|.+.+.+|.+++++...+. ++. -.+.++..|.+++.
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 67788999999999999999999999986542 222 23456777877764
No 129
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=74.90 E-value=15 Score=34.53 Aligned_cols=58 Identities=21% Similarity=0.166 Sum_probs=41.5
Q ss_pred HHHcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEE
Q 021570 126 AEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVL 187 (311)
Q Consensus 126 A~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~ 187 (311)
+.+...+++|++.+|.+ .|..|.+++..|+.+|.+++++.. ++.|++.++.+||+.+.
T Consensus 157 ~~~~~~~~~g~~VlV~G-~g~iG~~a~~~a~~~G~~vi~~~~---~~~~~~~a~~~Ga~~vi 214 (329)
T TIGR02822 157 ALLRASLPPGGRLGLYG-FGGSAHLTAQVALAQGATVHVMTR---GAAARRLALALGAASAG 214 (329)
T ss_pred HHHhcCCCCCCEEEEEc-CCHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHhCCceec
Confidence 34446677775555554 588999999999999997444322 36678899999997654
No 130
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=74.74 E-value=32 Score=32.03 Aligned_cols=53 Identities=21% Similarity=0.281 Sum_probs=39.1
Q ss_pred CCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEE
Q 021570 131 LITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVL 187 (311)
Q Consensus 131 ~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~ 187 (311)
.+.+|+..+|.+ +|..|.+++..|+.+|.+++++.. ...++..++.+|++-+.
T Consensus 160 ~~~~~~~vlV~g-~g~iG~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~~i 212 (333)
T cd08296 160 GAKPGDLVAVQG-IGGLGHLAVQYAAKMGFRTVAISR---GSDKADLARKLGAHHYI 212 (333)
T ss_pred CCCCCCEEEEEC-CcHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHcCCcEEe
Confidence 456665555555 899999999999999998555433 35677788889986544
No 131
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=74.74 E-value=21 Score=31.75 Aligned_cols=56 Identities=25% Similarity=0.353 Sum_probs=38.7
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCC
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSA 191 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~ 191 (311)
+..+|++.+|.-|.++|......|.+++++-...........+...|.++..+..+
T Consensus 9 k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D 64 (260)
T PRK12823 9 KVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAAELRAAGGEALALTAD 64 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHHHHHHHHHhcCCeEEEEEEe
Confidence 36789999999999999999999998776643321222334455667777654433
No 132
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=74.71 E-value=26 Score=29.92 Aligned_cols=75 Identities=23% Similarity=0.271 Sum_probs=55.0
Q ss_pred CCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECC---------CCCHHHHHHHHh
Q 021570 110 PCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPA---------SMSLERRVLLKA 180 (311)
Q Consensus 110 PtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~---------~~~~~k~~~l~~ 180 (311)
|.--+-++.....+.+|.+.|. +..||.+|+|.++.-+.-+... .+++++|.-. ..+++-...++.
T Consensus 7 pG~eNT~~tle~a~erA~elgi----k~~vVAS~tG~tA~k~lemveg-~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~e 81 (186)
T COG1751 7 PGKENTDETLEIAVERAKELGI----KHIVVASSTGYTALKALEMVEG-DLKVVVVTHHAGFEEKGTQEMDEEVRKELKE 81 (186)
T ss_pred CcccchHHHHHHHHHHHHhcCc----ceEEEEecccHHHHHHHHhccc-CceEEEEEeecccccCCceecCHHHHHHHHH
Confidence 4445668889999999999997 3456666778888776666543 2888887632 256778888999
Q ss_pred cCCEEEEEC
Q 021570 181 FGAELVLTD 189 (311)
Q Consensus 181 ~GA~V~~v~ 189 (311)
.|++|..-.
T Consensus 82 rGa~v~~~s 90 (186)
T COG1751 82 RGAKVLTQS 90 (186)
T ss_pred cCceeeeeh
Confidence 999997654
No 133
>PRK14030 glutamate dehydrogenase; Provisional
Probab=74.32 E-value=19 Score=35.90 Aligned_cols=60 Identities=18% Similarity=0.117 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEE--------ECCCCCHHH
Q 021570 115 KDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILT--------MPASMSLER 174 (311)
Q Consensus 115 KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv--------~p~~~~~~k 174 (311)
=-||..+.+..+.+..-......+|+.-..||-|..+|.+...+|.+++.+ -|+..+..+
T Consensus 207 Tg~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~ 274 (445)
T PRK14030 207 TGFGALYFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEK 274 (445)
T ss_pred cHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHH
Confidence 357888888776544323443478999999999999999999999999984 455555555
No 134
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=74.30 E-value=42 Score=32.20 Aligned_cols=109 Identities=14% Similarity=0.075 Sum_probs=58.9
Q ss_pred CCCCchhhHHHHHHHHHHHHcCC---CCCCCceEEeeCcChHHHHHHHHHHH-cCCeEEEEECCCCCHHHHHHHHhcCCE
Q 021570 109 EPCCSVKDRIGFSMIADAEQKGL---ITPGKSILVEPTSGNTGIGLAFIAAS-KGYKLILTMPASMSLERRVLLKAFGAE 184 (311)
Q Consensus 109 nPtGS~KdRga~~~v~~A~~~G~---~~~g~~~vv~aSsGN~g~AlA~~aa~-~Gi~~~vv~p~~~~~~k~~~l~~~GA~ 184 (311)
.+.|.-..|-+........ .|. +.+. ..|+..++++.+..++..+-. -|=...|++|.-.-..-....+.+|++
T Consensus 62 ~~~G~~~lr~aia~~~~~~-~~~~~~~~~~-~~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~~~~~~g~~ 139 (393)
T TIGR03538 62 TTKGLPELRQAIARWLERR-FDLPTGVDPE-RHVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGAALLAGAE 139 (393)
T ss_pred CCCCCHHHHHHHHHHHHHh-hCCcccCCCC-ceEEECCCcHHHHHHHHHHHcCCCCcceEEecCCCCcchHHHHHhcCCe
Confidence 3467777776655433222 232 2321 357777778888877665532 343345777764433334567789999
Q ss_pred EEEECCCC--ChH---HHHHHHHHHHHhCCCceeeCCCCCCcc
Q 021570 185 LVLTDSAK--GMK---GAVQKAEEILNSTPNAYMLQQFDNPAN 222 (311)
Q Consensus 185 V~~v~~~~--~~~---~a~~~a~~~~~~~~~~~~~~~~~n~~~ 222 (311)
++.++-+. ++. +.++.+ ..++...+|+...+||..
T Consensus 140 ~~~v~~~~~~~~~~d~~~l~~~---~~~~~k~i~l~~p~NPtG 179 (393)
T TIGR03538 140 PYFLNCTAENGFLPDFDAVPES---VWRRCQLLFVCSPGNPTG 179 (393)
T ss_pred EEEeeccccCCCCCCHHHHHHH---HhhcceEEEEeCCCCCcC
Confidence 99886431 121 222222 222335667655555543
No 135
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=73.93 E-value=27 Score=32.79 Aligned_cols=60 Identities=20% Similarity=0.233 Sum_probs=41.7
Q ss_pred HHHcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEE
Q 021570 126 AEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLT 188 (311)
Q Consensus 126 A~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v 188 (311)
+.++....+|++.+|. .+|..|.+....|+.+|.+.++++. .++.|++.++.+||+.+..
T Consensus 161 al~~~~~~~g~~VlV~-G~G~vG~~aiqlak~~G~~~Vi~~~--~~~~~~~~a~~lGa~~vi~ 220 (343)
T PRK09880 161 AAHQAGDLQGKRVFVS-GVGPIGCLIVAAVKTLGAAEIVCAD--VSPRSLSLAREMGADKLVN 220 (343)
T ss_pred HHHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEEe--CCHHHHHHHHHcCCcEEec
Confidence 3343334456555554 5699999999999999996554443 3467888899999986543
No 136
>PRK12743 oxidoreductase; Provisional
Probab=73.64 E-value=20 Score=32.02 Aligned_cols=55 Identities=15% Similarity=0.247 Sum_probs=40.1
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCC--HHHHHHHHhcCCEEEEECCC
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMS--LERRVLLKAFGAELVLTDSA 191 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~--~~k~~~l~~~GA~V~~v~~~ 191 (311)
+.+|++.+|.-|.++|......|.+++++...+.. ......++.+|.++..+..+
T Consensus 4 ~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 60 (256)
T PRK12743 4 VAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLD 60 (256)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEcc
Confidence 67888999999999999999999988776543322 22234566778877765544
No 137
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=73.53 E-value=34 Score=30.42 Aligned_cols=55 Identities=18% Similarity=0.191 Sum_probs=40.0
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCC
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSA 191 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~ 191 (311)
+..+|++.+|.-|.++|...+..|.+++++ ...........++..|.++..+..+
T Consensus 11 k~~lItG~~~gIG~a~a~~l~~~G~~vv~~-~~~~~~~~~~~~~~~~~~~~~~~~D 65 (253)
T PRK08993 11 KVAVVTGCDTGLGQGMALGLAEAGCDIVGI-NIVEPTETIEQVTALGRRFLSLTAD 65 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEe-cCcchHHHHHHHHhcCCeEEEEECC
Confidence 467999999999999999999999987765 2223344455666677777665544
No 138
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=73.51 E-value=75 Score=29.84 Aligned_cols=55 Identities=27% Similarity=0.410 Sum_probs=38.8
Q ss_pred cCCCCCCCceEEeeCcChHHHHHHHHHHHcCC-eEEEEECCCCCHHHHHHHHhcCCEEEE
Q 021570 129 KGLITPGKSILVEPTSGNTGIGLAFIAASKGY-KLILTMPASMSLERRVLLKAFGAELVL 187 (311)
Q Consensus 129 ~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi-~~~vv~p~~~~~~k~~~l~~~GA~V~~ 187 (311)
.+...+|+..+|. .+|..|.+++..|+.+|. +++++. .+..+...++.+|++-+.
T Consensus 172 ~~~~~~g~~vlI~-g~g~vG~~~~~lak~~G~~~v~~~~---~~~~~~~~~~~~g~~~vi 227 (361)
T cd08231 172 AGPVGAGDTVVVQ-GAGPLGLYAVAAAKLAGARRVIVID---GSPERLELAREFGADATI 227 (361)
T ss_pred ccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEc---CCHHHHHHHHHcCCCeEE
Confidence 3444466556665 479999999999999999 554442 246677788889985433
No 139
>PRK08703 short chain dehydrogenase; Provisional
Probab=73.17 E-value=44 Score=29.22 Aligned_cols=31 Identities=35% Similarity=0.354 Sum_probs=26.1
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEE
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTM 166 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~ 166 (311)
+..+|++.+|..|.++|......|.+++++-
T Consensus 7 k~vlItG~sggiG~~la~~l~~~g~~V~~~~ 37 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAAGATVILVA 37 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEe
Confidence 3678899999999999999988999866654
No 140
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=73.12 E-value=29 Score=30.92 Aligned_cols=55 Identities=18% Similarity=0.248 Sum_probs=39.4
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCC
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSA 191 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~ 191 (311)
+..+|++.++.-|.++|...+..|.+++++-... .+.....++..|.++..+..|
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~-~~~~~~~~~~~~~~~~~~~~D 63 (251)
T PRK12481 9 KVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE-APETQAQVEALGRKFHFITAD 63 (251)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch-HHHHHHHHHHcCCeEEEEEeC
Confidence 4678999999999999999999999987764322 223334556678777655444
No 141
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=72.91 E-value=35 Score=31.18 Aligned_cols=59 Identities=22% Similarity=0.272 Sum_probs=41.8
Q ss_pred HHHcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEE
Q 021570 126 AEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVL 187 (311)
Q Consensus 126 A~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~ 187 (311)
+.+.+.+.+|...+|...+|..|.+++..|+.+|.+.+++... ..+...++.+|++-+.
T Consensus 131 ~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~---~~~~~~~~~~g~~~~~ 189 (324)
T cd08292 131 LLDFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRR---DAGVAELRALGIGPVV 189 (324)
T ss_pred HHHhhCCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecC---HHHHHHHHhcCCCEEE
Confidence 3444567777666666677999999999999999987666443 3455666667875443
No 142
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=72.60 E-value=27 Score=30.93 Aligned_cols=56 Identities=13% Similarity=0.077 Sum_probs=40.2
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCC-CHHHHHHHHhcCCEEEEECCC
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASM-SLERRVLLKAFGAELVLTDSA 191 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~-~~~k~~~l~~~GA~V~~v~~~ 191 (311)
+..+|++.+|..|.+++......|.+++++..... ...-...++..|.++..+..+
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 64 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMD 64 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECC
Confidence 46799999999999999999999998776654321 122334556678888766554
No 143
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=72.59 E-value=19 Score=28.32 Aligned_cols=85 Identities=25% Similarity=0.375 Sum_probs=49.7
Q ss_pred HHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCCCCCCcchHhhHHHHHHHHHHHcCC-CCCEEEEccChhh
Q 021570 175 RVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEIWEDTRG-KVDIFIGGIGTGG 253 (311)
Q Consensus 175 ~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~t~a~Ei~~Ql~~-~pD~vv~pvG~Gg 253 (311)
++..+.+|++|+.++.+ ++..+.+ ++.+...+++. .+.+ ...+|.+..++ .+|.||-++|++.
T Consensus 7 ~q~ak~~G~~vi~~~~~---~~k~~~~----~~~Ga~~~~~~-~~~~--------~~~~i~~~~~~~~~d~vid~~g~~~ 70 (130)
T PF00107_consen 7 IQLAKAMGAKVIATDRS---EEKLELA----KELGADHVIDY-SDDD--------FVEQIRELTGGRGVDVVIDCVGSGD 70 (130)
T ss_dssp HHHHHHTTSEEEEEESS---HHHHHHH----HHTTESEEEET-TTSS--------HHHHHHHHTTTSSEEEEEESSSSHH
T ss_pred HHHHHHcCCEEEEEECC---HHHHHHH----Hhhcccccccc-cccc--------cccccccccccccceEEEEecCcHH
Confidence 45678899999999876 3344444 33322333333 2322 23455555554 5999999999887
Q ss_pred HHHHHHHHHHhcCCCCEEEEEeCCC
Q 021570 254 TISGAGRYLKEKNPNIKVIIFVLFI 278 (311)
Q Consensus 254 ~~~Gi~~~lk~~~p~~~iigVe~~~ 278 (311)
++.-....++ ++=+++.+--.+
T Consensus 71 ~~~~~~~~l~---~~G~~v~vg~~~ 92 (130)
T PF00107_consen 71 TLQEAIKLLR---PGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHHEE---EEEEEEEESSTS
T ss_pred HHHHHHHHhc---cCCEEEEEEccC
Confidence 6655444443 333555554443
No 144
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=72.49 E-value=45 Score=31.01 Aligned_cols=56 Identities=25% Similarity=0.462 Sum_probs=40.5
Q ss_pred cCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEE
Q 021570 129 KGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVL 187 (311)
Q Consensus 129 ~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~ 187 (311)
...+.+|+..+| ..+|..|.++...|+.+|++.++.+... +.+...++.+|++-+.
T Consensus 163 ~~~~~~g~~vlI-~g~g~vg~~~~~lak~~G~~~v~~~~~~--~~~~~~~~~~ga~~v~ 218 (345)
T cd08287 163 SAGVRPGSTVVV-VGDGAVGLCAVLAAKRLGAERIIAMSRH--EDRQALAREFGATDIV 218 (345)
T ss_pred hcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEECCC--HHHHHHHHHcCCceEe
Confidence 445566655555 5589999999999999999866555433 4677788889985433
No 145
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=72.43 E-value=30 Score=30.80 Aligned_cols=66 Identities=21% Similarity=0.234 Sum_probs=42.3
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHH
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKA 201 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a 201 (311)
+..+|++.+|.-|.++|..-...|.+++++............+...|.++..+..+-.-.+.++.+
T Consensus 16 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~ 81 (258)
T PRK06935 16 KVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEKEGRKVTFVQVDLTKPESAEKV 81 (258)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHH
Confidence 367889999999999999999999998887654211222334455676665554443223334333
No 146
>PRK08628 short chain dehydrogenase; Provisional
Probab=72.41 E-value=28 Score=30.87 Aligned_cols=66 Identities=14% Similarity=0.110 Sum_probs=43.8
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHH
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKA 201 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a 201 (311)
+..+|++.+|-.|.++|..-...|.+++++............++..|.++..+..+-.-.+.++.+
T Consensus 8 ~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 73 (258)
T PRK08628 8 KVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTDDAQCRDA 73 (258)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhHHHHHHHHhcCCceEEEEccCCCHHHHHHH
Confidence 367888889999999999999999998776543322233345566787776665543223334443
No 147
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=72.32 E-value=50 Score=31.72 Aligned_cols=80 Identities=10% Similarity=0.027 Sum_probs=45.4
Q ss_pred CCCchhhHHHHHHHHHHHHcCC--CCCCCceEEeeCcChHHHHHHHHHHHcC--CeEEEEECCCCCHHHHHHHHhcCCEE
Q 021570 110 PCCSVKDRIGFSMIADAEQKGL--ITPGKSILVEPTSGNTGIGLAFIAASKG--YKLILTMPASMSLERRVLLKAFGAEL 185 (311)
Q Consensus 110 PtGS~KdRga~~~v~~A~~~G~--~~~g~~~vv~aSsGN~g~AlA~~aa~~G--i~~~vv~p~~~~~~k~~~l~~~GA~V 185 (311)
+.|.-+.|-+...... ...|. +.+. ..|+..+++..+..++..+-.-. -.-.|++|.-.-..-...++.+|+++
T Consensus 64 ~~G~~~lr~~ia~~~~-~~~g~~~~~~~-~~i~it~G~~~al~~~~~~l~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~ 141 (396)
T PRK09147 64 TAGLPALREAIAAWLE-RRYGLPALDPA-TQVLPVNGSREALFAFAQTVIDRDGPGPLVVCPNPFYQIYEGAALLAGAEP 141 (396)
T ss_pred CCCCHHHHHHHHHHHH-HHhCCCcCCcc-ceEEECCChHHHHHHHHHHHcCCCCCCCEEEEcCCCccchHHHHHhcCCEE
Confidence 4676777765443332 22353 3332 35777777788877666544221 12345555433344455677899999
Q ss_pred EEECCC
Q 021570 186 VLTDSA 191 (311)
Q Consensus 186 ~~v~~~ 191 (311)
+.++-+
T Consensus 142 ~~vp~~ 147 (396)
T PRK09147 142 YFLNCD 147 (396)
T ss_pred EEeccC
Confidence 998753
No 148
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=71.88 E-value=32 Score=30.23 Aligned_cols=65 Identities=20% Similarity=0.183 Sum_probs=43.0
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHH
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKA 201 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a 201 (311)
++.+|++.+|.-|.++|......|.+++++-. +........++.++.++..+..+..-.+.++.+
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 70 (248)
T TIGR01832 6 KVALVTGANTGLGQGIAVGLAEAGADIVGAGR-SEPSETQQQVEALGRRFLSLTADLSDIEAIKAL 70 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcC-chHHHHHHHHHhcCCceEEEECCCCCHHHHHHH
Confidence 46788888999999999999999998777653 222333455566777666655543223444433
No 149
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=71.83 E-value=66 Score=30.06 Aligned_cols=58 Identities=21% Similarity=0.258 Sum_probs=42.3
Q ss_pred HHcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEE
Q 021570 127 EQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVL 187 (311)
Q Consensus 127 ~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~ 187 (311)
.+...+.+|++.+|. .+|..|.+++..|+.+|.+.++.+. .++.|+..++.+|++-++
T Consensus 153 ~~~~~~~~g~~vlV~-G~g~vG~~~~~~a~~~G~~~v~~~~--~~~~~~~~~~~~Ga~~~i 210 (347)
T PRK10309 153 FHLAQGCEGKNVIII-GAGTIGLLAIQCAVALGAKSVTAID--INSEKLALAKSLGAMQTF 210 (347)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEC--CCHHHHHHHHHcCCceEe
Confidence 445556677555555 5799999999999999998655543 256778888899996544
No 150
>PRK07109 short chain dehydrogenase; Provisional
Probab=71.77 E-value=19 Score=34.00 Aligned_cols=68 Identities=21% Similarity=0.201 Sum_probs=44.8
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMS-LERRVLLKAFGAELVLTDSAKGMKGAVQKAEE 203 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~-~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~ 203 (311)
+..+|++.+|--|.++|...+..|.+++++...... ......++.+|++++.+..|-.-.+.++.+.+
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~ 77 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAAD 77 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHH
Confidence 367888899999999999999999987776543211 12234566778888766554322344444433
No 151
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=71.52 E-value=89 Score=29.55 Aligned_cols=57 Identities=18% Similarity=0.222 Sum_probs=40.4
Q ss_pred HcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEE
Q 021570 128 QKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVL 187 (311)
Q Consensus 128 ~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~ 187 (311)
+...+.+|+..+|. .+|..|.+++..|+.+|...++.+.. ...+++.++.+|++.+.
T Consensus 181 ~~~~~~~g~~VlV~-G~g~vG~~a~q~ak~~G~~~vi~~~~--~~~~~~~~~~~Ga~~~i 237 (369)
T cd08301 181 NVAKVKKGSTVAIF-GLGAVGLAVAEGARIRGASRIIGVDL--NPSKFEQAKKFGVTEFV 237 (369)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHcCCceEE
Confidence 34556777555555 57999999999999999843344332 35688888999997554
No 152
>PRK08226 short chain dehydrogenase; Provisional
Probab=71.51 E-value=27 Score=31.05 Aligned_cols=66 Identities=21% Similarity=0.108 Sum_probs=41.1
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHH
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKA 201 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a 201 (311)
+..+|++.+|.-|.++|......|.+++++-...........+...|.++..+..|-.-.+.++.+
T Consensus 7 ~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~ 72 (263)
T PRK08226 7 KTALITGALQGIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAA 72 (263)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHH
Confidence 367888999999999999999999997666433211122333444576765554443223334443
No 153
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=71.46 E-value=16 Score=35.99 Aligned_cols=53 Identities=21% Similarity=0.285 Sum_probs=41.7
Q ss_pred CCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEE
Q 021570 130 GLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELV 186 (311)
Q Consensus 130 G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~ 186 (311)
+..-+| ++|+....|.-|..+|..++.+|.+++++ +..+.+....+.+|++++
T Consensus 197 ~~~l~G-ktVvViG~G~IG~~va~~ak~~Ga~ViV~---d~d~~R~~~A~~~G~~~~ 249 (413)
T cd00401 197 DVMIAG-KVAVVAGYGDVGKGCAQSLRGQGARVIVT---EVDPICALQAAMEGYEVM 249 (413)
T ss_pred CCCCCC-CEEEEECCCHHHHHHHHHHHHCCCEEEEE---ECChhhHHHHHhcCCEEc
Confidence 444455 67999999999999999999999975553 334667778888998764
No 154
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=71.46 E-value=30 Score=31.78 Aligned_cols=50 Identities=26% Similarity=0.364 Sum_probs=36.6
Q ss_pred CCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEE
Q 021570 135 GKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVL 187 (311)
Q Consensus 135 g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~ 187 (311)
++..+|.+.+|..|.+++..|+.+|.++++... .+.+...++.+|++-+.
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~v~ 196 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAKLGYEVVASTG---KADAADYLKKLGAKEVI 196 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCeEEEEec---CHHHHHHHHHcCCCEEE
Confidence 445566666799999999999999998655433 34567777889985443
No 155
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=70.94 E-value=55 Score=29.10 Aligned_cols=30 Identities=23% Similarity=0.403 Sum_probs=25.0
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEE
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTM 166 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~ 166 (311)
+.+|++++|.-|.++|...+..|.++++.-
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~ 31 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISS 31 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEe
Confidence 358889999999999999999998866653
No 156
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=70.83 E-value=62 Score=29.95 Aligned_cols=53 Identities=25% Similarity=0.315 Sum_probs=38.1
Q ss_pred CCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEE
Q 021570 130 GLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAEL 185 (311)
Q Consensus 130 G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V 185 (311)
..+.+|+..+|. .+|..|.+++..|+.+|+..++++ .....+...++.+|+.+
T Consensus 163 ~~~~~~~~vlI~-g~g~vg~~~~~~a~~~g~~~v~~~--~~~~~~~~~~~~~g~~~ 215 (344)
T cd08284 163 AQVRPGDTVAVI-GCGPVGLCAVLSAQVLGAARVFAV--DPVPERLERAAALGAEP 215 (344)
T ss_pred cCCccCCEEEEE-CCcHHHHHHHHHHHHcCCceEEEE--cCCHHHHHHHHHhCCeE
Confidence 445566555555 589999999999999998433444 33467778888899875
No 157
>PRK06348 aspartate aminotransferase; Provisional
Probab=70.61 E-value=83 Score=30.07 Aligned_cols=110 Identities=14% Similarity=0.151 Sum_probs=58.1
Q ss_pred CCCCCchhhHHHHHHHHHHHHcCC-CCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEE
Q 021570 108 MEPCCSVKDRIGFSMIADAEQKGL-ITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELV 186 (311)
Q Consensus 108 ~nPtGS~KdRga~~~v~~A~~~G~-~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~ 186 (311)
-.+.|.--.|.+...... .+.|. +.+ ..|+..+++.+|..++..+-. +-.-.|+++.-.-..-...++.+|++++
T Consensus 63 ~~~~G~~~lr~~ia~~~~-~~~~~~~~~--~~i~it~G~~~al~~~~~~~~-~~gd~vlv~~p~y~~~~~~~~~~g~~~~ 138 (384)
T PRK06348 63 TDSGGDVELIEEIIKYYS-KNYDLSFKR--NEIMATVGACHGMYLALQSIL-DPGDEVIIHEPYFTPYKDQIEMVGGKPI 138 (384)
T ss_pred CCCCCcHHHHHHHHHHHH-HHhCCCCCh--hhEEEcCChHHHHHHHHHHhc-CCCCEEEEeCCCCcchHHHHHHcCCEEE
Confidence 345676666655444332 22232 232 457788888888877766642 2223556665444455667778899998
Q ss_pred EECCC--CChHHHHHHHHHHHHhCCCceeeCCCCCCc
Q 021570 187 LTDSA--KGMKGAVQKAEEILNSTPNAYMLQQFDNPA 221 (311)
Q Consensus 187 ~v~~~--~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~ 221 (311)
.++.. .++.-..+...+..++....+++...+||.
T Consensus 139 ~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPt 175 (384)
T PRK06348 139 ILETYEEDGFQINVKKLEALITSKTKAIILNSPNNPT 175 (384)
T ss_pred EecCCcCcCCcCCHHHHHHhhCcCccEEEEeCCCCCC
Confidence 87632 122111122222222333566765445554
No 158
>PRK08589 short chain dehydrogenase; Validated
Probab=70.50 E-value=28 Score=31.48 Aligned_cols=56 Identities=18% Similarity=0.092 Sum_probs=38.2
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCC
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSA 191 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~ 191 (311)
+..+|++.+|--|.++|..-...|.+++++-...........++..|.++..+..|
T Consensus 7 k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~D 62 (272)
T PRK08589 7 KVAVITGASTGIGQASAIALAQEGAYVLAVDIAEAVSETVDKIKSNGGKAKAYHVD 62 (272)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHhcCCeEEEEEee
Confidence 46788889999999999999999998887754411122234555567666554443
No 159
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=70.17 E-value=26 Score=31.09 Aligned_cols=67 Identities=24% Similarity=0.117 Sum_probs=42.3
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHHH
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMS-LERRVLLKAFGAELVLTDSAKGMKGAVQKAE 202 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~-~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~ 202 (311)
++.+|++.+|..|.++|......|.+++++-..... ......++..|.++..+..+..-.+.++.+.
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~ 78 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAI 78 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHH
Confidence 467888999999999999999999987665432111 1223345556777776654432233444443
No 160
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=70.15 E-value=22 Score=38.94 Aligned_cols=31 Identities=19% Similarity=0.314 Sum_probs=28.7
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEEC
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMP 167 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p 167 (311)
+.|+.-.+|-.|.+.|.+.++.|++++||=.
T Consensus 307 kkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~ 337 (944)
T PRK12779 307 PPIAVVGSGPSGLINAYLLAVEGFPVTVFEA 337 (944)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEee
Confidence 6799999999999999999999999999943
No 161
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=70.08 E-value=18 Score=30.61 Aligned_cols=46 Identities=22% Similarity=0.253 Sum_probs=36.3
Q ss_pred cChHHHHHHHHHHHcCCeEEEEECCC--CCH--HHH----HHHHhcCCEEEEEC
Q 021570 144 SGNTGIGLAFIAASKGYKLILTMPAS--MSL--ERR----VLLKAFGAELVLTD 189 (311)
Q Consensus 144 sGN~g~AlA~~aa~~Gi~~~vv~p~~--~~~--~k~----~~l~~~GA~V~~v~ 189 (311)
-+|.+.|++..++++|+.++++.|+. .+. ..+ +.....|.++..++
T Consensus 12 ~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 65 (158)
T PF00185_consen 12 HNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITD 65 (158)
T ss_dssp TSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEES
T ss_pred CChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEe
Confidence 38999999999999999999999998 555 233 23455699998884
No 162
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=69.83 E-value=61 Score=29.63 Aligned_cols=58 Identities=24% Similarity=0.338 Sum_probs=43.3
Q ss_pred cCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEEC
Q 021570 129 KGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTD 189 (311)
Q Consensus 129 ~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~ 189 (311)
.+.+.+|+..+|.+.+|..|.+++..|+.+|.+.+++.. +..+...++.+|++.+...
T Consensus 135 ~~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~~~~ 192 (334)
T PTZ00354 135 HGDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTS---SEEKVDFCKKLAAIILIRY 192 (334)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEEEec
Confidence 356677766677777899999999999999998765432 4567777788998655443
No 163
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=69.81 E-value=41 Score=29.19 Aligned_cols=65 Identities=18% Similarity=0.205 Sum_probs=43.1
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCC--HHHHHHHHhcCCEEEEECCCCChHHHHHHH
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMS--LERRVLLKAFGAELVLTDSAKGMKGAVQKA 201 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~--~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a 201 (311)
+.+|++.+|..|.+++......|.+++++.....+ ......++..+.++..+..+..-.+.+..+
T Consensus 7 ~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 73 (248)
T PRK05557 7 VALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERA 73 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHH
Confidence 67889999999999999999999997666643322 122334555677887776553333444443
No 164
>PRK06139 short chain dehydrogenase; Provisional
Probab=69.75 E-value=21 Score=33.83 Aligned_cols=69 Identities=17% Similarity=0.188 Sum_probs=44.1
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHHHHH
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMS-LERRVLLKAFGAELVLTDSAKGMKGAVQKAEEI 204 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~-~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~ 204 (311)
+..+|++.+|--|.++|...+..|.+++++...... ......++.+|+++..+..|-.-.+.++.+.+.
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~ 77 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQ 77 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHH
Confidence 367888889999999999999999997766532211 122345667788876554442223444444433
No 165
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=69.62 E-value=29 Score=33.41 Aligned_cols=56 Identities=23% Similarity=0.356 Sum_probs=42.3
Q ss_pred CCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEE
Q 021570 130 GLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLT 188 (311)
Q Consensus 130 G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v 188 (311)
..+.+|...+|.+.+|..|.+++..|+.+|.+.++.. .+..+...++.+|+..+.-
T Consensus 185 ~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~---~~~~~~~~~~~~g~~~~v~ 240 (398)
T TIGR01751 185 ATVKPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVV---SSPEKAEYCRELGAEAVID 240 (398)
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEc---CCHHHHHHHHHcCCCEEec
Confidence 4556666666777779999999999999999865543 3456778888899876643
No 166
>PLN02740 Alcohol dehydrogenase-like
Probab=69.55 E-value=85 Score=30.01 Aligned_cols=57 Identities=19% Similarity=0.244 Sum_probs=41.3
Q ss_pred HcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEE
Q 021570 128 QKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVL 187 (311)
Q Consensus 128 ~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~ 187 (311)
+...+.+|++.+|. ..|.-|.+++..|+.+|.+-++.+ +.++.|++.++.+|++.+.
T Consensus 192 ~~~~~~~g~~VlV~-G~G~vG~~a~q~ak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~i 248 (381)
T PLN02740 192 NTANVQAGSSVAIF-GLGAVGLAVAEGARARGASKIIGV--DINPEKFEKGKEMGITDFI 248 (381)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHCCCCcEEEE--cCChHHHHHHHHcCCcEEE
Confidence 44567777555555 579999999999999998534443 2346788888999997544
No 167
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=69.46 E-value=19 Score=31.80 Aligned_cols=50 Identities=28% Similarity=0.337 Sum_probs=33.0
Q ss_pred eCcChHHHHHHHHHHHcCCeEEEEECCCCC-HH-HHHHHHhcCCEEEEECCC
Q 021570 142 PTSGNTGIGLAFIAASKGYKLILTMPASMS-LE-RRVLLKAFGAELVLTDSA 191 (311)
Q Consensus 142 aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~-~~-k~~~l~~~GA~V~~v~~~ 191 (311)
++++.-|.++|....+.|.++++.-..... .. .....+.+|.+++.++-.
T Consensus 3 ~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~~ 54 (241)
T PF13561_consen 3 GSSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAEVIQCDLS 54 (241)
T ss_dssp SSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSEEEESCTT
T ss_pred CCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCceEeecCc
Confidence 356778999999999999988877544321 11 223445678887666654
No 168
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=69.13 E-value=27 Score=29.79 Aligned_cols=70 Identities=21% Similarity=0.163 Sum_probs=46.2
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCC-----CCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHH
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPAS-----MSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILN 206 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~-----~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~ 206 (311)
.-+|++..|..|..+|..-+..|-.-+|++... .....++.++..|++|.....|-.-.+.++.+.+...
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~ 76 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLR 76 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSH
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHH
Confidence 457888899999999999888886666666443 2335677889999999987765433445555544443
No 169
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=68.64 E-value=31 Score=34.52 Aligned_cols=53 Identities=13% Similarity=-0.072 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEEC
Q 021570 115 KDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMP 167 (311)
Q Consensus 115 KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p 167 (311)
=-+|+.+.+..+.+.--.....++|+....||-|..+|.....+|.+++.+..
T Consensus 216 TG~Gv~~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD 268 (454)
T PTZ00079 216 TGYGLVYFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSD 268 (454)
T ss_pred cHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence 35778888877765432232247899999999999999999999999885543
No 170
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=68.62 E-value=37 Score=31.20 Aligned_cols=57 Identities=30% Similarity=0.404 Sum_probs=41.4
Q ss_pred HHcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEE
Q 021570 127 EQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVL 187 (311)
Q Consensus 127 ~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~ 187 (311)
.+.+.+.+|+..+|. .+|-.|.+++..|+.+|.+.+++ . .++.+...++.+|+..+.
T Consensus 148 ~~~~~~~~g~~vlV~-g~g~vg~~~~q~a~~~G~~vi~~-~--~~~~~~~~~~~~g~~~~~ 204 (319)
T cd08242 148 LEQVPITPGDKVAVL-GDGKLGLLIAQVLALTGPDVVLV-G--RHSEKLALARRLGVETVL 204 (319)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEE-c--CCHHHHHHHHHcCCcEEe
Confidence 355667777565565 57999999999999999995443 2 236778888889987543
No 171
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=68.59 E-value=1e+02 Score=29.22 Aligned_cols=57 Identities=18% Similarity=0.216 Sum_probs=41.3
Q ss_pred HcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEE
Q 021570 128 QKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVL 187 (311)
Q Consensus 128 ~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~ 187 (311)
+.+.+.+|++.+|. .+|..|.+++..|+.+|.+-++.+ +..+.|++.++.+|++.+.
T Consensus 179 ~~~~~~~g~~VlV~-G~G~iG~~a~q~Ak~~G~~~Vi~~--~~~~~~~~~a~~~Ga~~~i 235 (368)
T TIGR02818 179 NTAKVEEGDTVAVF-GLGGIGLSVIQGARMAKASRIIAI--DINPAKFELAKKLGATDCV 235 (368)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEE--cCCHHHHHHHHHhCCCeEE
Confidence 44566777555555 569999999999999999434443 3356788888999996544
No 172
>PRK06114 short chain dehydrogenase; Provisional
Probab=68.46 E-value=50 Score=29.30 Aligned_cols=68 Identities=16% Similarity=0.114 Sum_probs=43.8
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCC--HHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMS--LERRVLLKAFGAELVLTDSAKGMKGAVQKAEE 203 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~--~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~ 203 (311)
+..+|++.+|--|.++|......|.++++....... ......++..|.++..+..+-.-.+.++.+.+
T Consensus 9 k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~ 78 (254)
T PRK06114 9 QVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVA 78 (254)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 367888999999999999999999988876543221 22234566667776655544322334444433
No 173
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=68.33 E-value=55 Score=30.35 Aligned_cols=54 Identities=22% Similarity=0.279 Sum_probs=39.7
Q ss_pred CCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEE
Q 021570 131 LITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVL 187 (311)
Q Consensus 131 ~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~ 187 (311)
.+.++...+|.+.+|..|.+++..|+.+|+++++.... +.+...++.+|++-+.
T Consensus 162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~v~ 215 (341)
T cd08297 162 GLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVG---DEKLELAKELGADAFV 215 (341)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC---HHHHHHHHHcCCcEEE
Confidence 45666666667777789999999999999986665443 4566677778876543
No 174
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=68.00 E-value=22 Score=34.06 Aligned_cols=64 Identities=22% Similarity=0.278 Sum_probs=53.1
Q ss_pred HHHHcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCC
Q 021570 125 DAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSA 191 (311)
Q Consensus 125 ~A~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~ 191 (311)
+|-..+.+++| +++..-..|--|...-..|+.+|-.=+|++ +..+.+++..+.+||+++.-...
T Consensus 160 HAcr~~~vk~G-s~vLV~GAGPIGl~t~l~Aka~GA~~VVi~--d~~~~Rle~Ak~~Ga~~~~~~~~ 223 (354)
T KOG0024|consen 160 HACRRAGVKKG-SKVLVLGAGPIGLLTGLVAKAMGASDVVIT--DLVANRLELAKKFGATVTDPSSH 223 (354)
T ss_pred hhhhhcCcccC-CeEEEECCcHHHHHHHHHHHHcCCCcEEEe--ecCHHHHHHHHHhCCeEEeeccc
Confidence 46677778888 678889999999999999999998888775 35678899999999999765543
No 175
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=67.99 E-value=71 Score=29.31 Aligned_cols=57 Identities=28% Similarity=0.275 Sum_probs=41.6
Q ss_pred HcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEE
Q 021570 128 QKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVL 187 (311)
Q Consensus 128 ~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~ 187 (311)
+.+.+.+|+..+|.+.+|..|.+++..|+.+|++++++.+ ...+...++.+|++-+.
T Consensus 134 ~~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~---~~~~~~~~~~~g~~~~~ 190 (327)
T PRK10754 134 KTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVG---SAQKAQRAKKAGAWQVI 190 (327)
T ss_pred hhcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHCCCCEEE
Confidence 3466677756666667899999999999999998665543 35566777788875443
No 176
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=67.87 E-value=13 Score=37.92 Aligned_cols=54 Identities=15% Similarity=0.182 Sum_probs=41.7
Q ss_pred CCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCC------------------CCHHHHHHHHhcCCEEEE
Q 021570 133 TPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPAS------------------MSLERRVLLKAFGAELVL 187 (311)
Q Consensus 133 ~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~------------------~~~~k~~~l~~~GA~V~~ 187 (311)
.+| +.|+.-.+|-.|++.|.+++++|.+++||=... ....+++.++.+|++++.
T Consensus 135 ~~g-~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~ 206 (564)
T PRK12771 135 DTG-KRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRL 206 (564)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEe
Confidence 445 678999999999999999999999988774221 234566778889998765
No 177
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=67.79 E-value=1.1e+02 Score=28.64 Aligned_cols=58 Identities=22% Similarity=0.242 Sum_probs=41.5
Q ss_pred HHcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEE
Q 021570 127 EQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVL 187 (311)
Q Consensus 127 ~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~ 187 (311)
.+...+.+|+..+|. .+|..|.+++..|+.+|...++.+.. ...+....+.+|++.+.
T Consensus 159 ~~~~~~~~g~~vlI~-g~g~iG~~~~~lak~~G~~~v~~~~~--~~~~~~~~~~~g~~~~v 216 (351)
T cd08285 159 AELANIKLGDTVAVF-GIGPVGLMAVAGARLRGAGRIIAVGS--RPNRVELAKEYGATDIV 216 (351)
T ss_pred HHccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCceEe
Confidence 345556777555555 57999999999999999975555433 35677888889986443
No 178
>PRK10537 voltage-gated potassium channel; Provisional
Probab=67.67 E-value=1.1e+02 Score=29.95 Aligned_cols=49 Identities=14% Similarity=0.078 Sum_probs=34.6
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECC
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDS 190 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~ 190 (311)
++++.+..|+.|..++-.-+..|.+++|+.++. .+.....|.+++.-+.
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~-----~~~~~~~g~~vI~GD~ 289 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQRGQAVTVIVPLG-----LEHRLPDDADLIPGDS 289 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHCCCCEEEEECch-----hhhhccCCCcEEEeCC
Confidence 578899999999999988888899998887641 2223334555554444
No 179
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=67.66 E-value=32 Score=30.76 Aligned_cols=67 Identities=16% Similarity=0.054 Sum_probs=42.3
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHHH
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMS-LERRVLLKAFGAELVLTDSAKGMKGAVQKAE 202 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~-~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~ 202 (311)
+..+|++.+|..|.++|...+..|.+++++-..... ......++..|.+++.+..|-.-.+.++.+.
T Consensus 11 k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 78 (265)
T PRK07097 11 KIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMV 78 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHH
Confidence 367899999999999999999999997766322111 1123345566777766655432233444433
No 180
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=67.61 E-value=79 Score=32.20 Aligned_cols=51 Identities=20% Similarity=0.158 Sum_probs=41.3
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECC
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDS 190 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~ 190 (311)
..++.-..|..|++.+..++.+|..++++ +....++++.+.+|++.+.++.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~---d~~~~rle~a~~lGa~~v~v~~ 215 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAF---DTRPEVKEQVQSMGAEFLELDF 215 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEE---eCCHHHHHHHHHcCCeEEeccc
Confidence 46777789999999999999999885555 3345678889999999977764
No 181
>PRK08643 acetoin reductase; Validated
Probab=67.51 E-value=37 Score=30.02 Aligned_cols=67 Identities=16% Similarity=0.147 Sum_probs=42.1
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHH-HHHHHHhcCCEEEEECCCCChHHHHHHHH
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLE-RRVLLKAFGAELVLTDSAKGMKGAVQKAE 202 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~-k~~~l~~~GA~V~~v~~~~~~~~a~~~a~ 202 (311)
+..+|++.+|.-|.++|......|.+++++-....... ....+...|.++..+..|-.-.+.++.+.
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 70 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAV 70 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHH
Confidence 35688899999999999999999998766643321111 22334556777766655432234444443
No 182
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=67.33 E-value=33 Score=29.89 Aligned_cols=61 Identities=25% Similarity=0.363 Sum_probs=38.7
Q ss_pred eEEeeCcChHHHHHHHHHHHcCCeEEEEECCC-CCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhC
Q 021570 138 ILVEPTSGNTGIGLAFIAASKGYKLILTMPAS-MSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNST 208 (311)
Q Consensus 138 ~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~-~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~ 208 (311)
-|--.|||-+|.++|.++..+|.+++++.... .+. -.|.+++.+.. .++-.+.+.+...+.
T Consensus 22 ~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~-------p~~~~~i~v~s---a~em~~~~~~~~~~~ 83 (185)
T PF04127_consen 22 FITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLPP-------PPGVKVIRVES---AEEMLEAVKELLPSA 83 (185)
T ss_dssp EEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS-----------TTEEEEE-SS---HHHHHHHHHHHGGGG
T ss_pred EecCCCcCHHHHHHHHHHHHCCCEEEEEecCccccc-------cccceEEEecc---hhhhhhhhccccCcc
Confidence 34456999999999999999999999998553 222 24778888876 355555555555443
No 183
>PRK12937 short chain dehydrogenase; Provisional
Probab=67.04 E-value=49 Score=28.84 Aligned_cols=66 Identities=20% Similarity=0.224 Sum_probs=43.9
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCC--HHHHHHHHhcCCEEEEECCCCChHHHHHHH
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMS--LERRVLLKAFGAELVLTDSAKGMKGAVQKA 201 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~--~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a 201 (311)
...+|++.+|..|.++|..-...|.+++++.....+ ......++.+|.++..+..+-.-.+.++.+
T Consensus 6 ~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 73 (245)
T PRK12937 6 KVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRL 73 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHH
Confidence 367888999999999999999999988776543321 122345566788887766553223334333
No 184
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=66.94 E-value=69 Score=28.94 Aligned_cols=57 Identities=26% Similarity=0.396 Sum_probs=41.2
Q ss_pred cCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEE
Q 021570 129 KGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLT 188 (311)
Q Consensus 129 ~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v 188 (311)
.+.+.+|+..+|.+.+|..|.++...|+.+|.+++++... ..+...++.+|++-+..
T Consensus 137 ~~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~~~ 193 (320)
T cd08243 137 SLGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRS---PERAALLKELGADEVVI 193 (320)
T ss_pred hcCCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHhcCCcEEEe
Confidence 3445666666666677999999999999999996555332 45677778889865543
No 185
>PRK07550 hypothetical protein; Provisional
Probab=66.93 E-value=1.1e+02 Score=29.03 Aligned_cols=77 Identities=14% Similarity=0.135 Sum_probs=47.9
Q ss_pred CCchhhHHHHHHHHHHHHcCC-CCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEEC
Q 021570 111 CCSVKDRIGFSMIADAEQKGL-ITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTD 189 (311)
Q Consensus 111 tGS~KdRga~~~v~~A~~~G~-~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~ 189 (311)
.|.-..|.+....... ..|. +.+ ..|+..++++.+..++..+- .+-.-.|++|.-.-..-...++..|++++.++
T Consensus 67 ~G~~~lr~~ia~~~~~-~~g~~~~~--~~i~~t~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~ 142 (386)
T PRK07550 67 EGLPELREAYAAHYSR-LYGAAISP--EQVHITSGCNQAFWAAMVTL-AGAGDEVILPLPWYFNHKMWLDMLGIRPVYLP 142 (386)
T ss_pred CCCHHHHHHHHHHHHH-HhCCCCCc--ceEEEecCcHHHHHHHHHHh-cCCCCEEEEcCCCCcchHHHHHhcCCEEEEEe
Confidence 5777777655543322 2332 332 45777777788877776554 34445677776544444567788999999887
Q ss_pred CC
Q 021570 190 SA 191 (311)
Q Consensus 190 ~~ 191 (311)
.+
T Consensus 143 ~~ 144 (386)
T PRK07550 143 CD 144 (386)
T ss_pred cC
Confidence 64
No 186
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=66.78 E-value=26 Score=33.08 Aligned_cols=56 Identities=20% Similarity=0.209 Sum_probs=41.3
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCH--HHHHH----HHhcCCEEEEECCC
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSL--ERRVL----LKAFGAELVLTDSA 191 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~--~k~~~----l~~~GA~V~~v~~~ 191 (311)
.+.+.++-+.|.+.|+-.+|+.+|++++|..|+...+ .-+.. .+..|+.|..+...
T Consensus 154 ~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d~ 215 (310)
T COG0078 154 LKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTEDP 215 (310)
T ss_pred cEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecCH
Confidence 3555566668999999999999999999999996433 22222 24458899888653
No 187
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=66.39 E-value=39 Score=29.38 Aligned_cols=33 Identities=18% Similarity=0.315 Sum_probs=28.5
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECC
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPA 168 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~ 168 (311)
+..+|++.+|..|.+++......|.+++++...
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~ 38 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRN 38 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 467899999999999999999999988877654
No 188
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=66.23 E-value=54 Score=28.73 Aligned_cols=57 Identities=23% Similarity=0.310 Sum_probs=40.6
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCH--HHHHHHHhcCCEEEEECCCC
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSL--ERRVLLKAFGAELVLTDSAK 192 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~--~k~~~l~~~GA~V~~v~~~~ 192 (311)
+..+|++.+|.-|.+++..-...|.+++++...+... .....++..|.++..+..+.
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~ 63 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANV 63 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCC
Confidence 3678999999999999999999999887754433221 22345566788877765553
No 189
>PRK05854 short chain dehydrogenase; Provisional
Probab=66.13 E-value=73 Score=29.61 Aligned_cols=32 Identities=34% Similarity=0.445 Sum_probs=25.8
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEEC
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMP 167 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p 167 (311)
+..||++.+|--|.++|..-++.|.+++++..
T Consensus 15 k~~lITGas~GIG~~~a~~La~~G~~Vil~~R 46 (313)
T PRK05854 15 KRAVVTGASDGLGLGLARRLAAAGAEVILPVR 46 (313)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 36788888888999999988889988776643
No 190
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=65.67 E-value=43 Score=31.02 Aligned_cols=68 Identities=18% Similarity=0.131 Sum_probs=44.7
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCC--CHHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASM--SLERRVLLKAFGAELVLTDSAKGMKGAVQKAEE 203 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~--~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~ 203 (311)
+..||++.+|.-|.++|..-...|.++++.-.... .......++..|.+++.+..|-.-.+.++.+.+
T Consensus 13 k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~ 82 (306)
T PRK07792 13 KVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVA 82 (306)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHH
Confidence 36788899999999999999999998776543221 123345567778888777655322334444433
No 191
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=65.41 E-value=47 Score=30.67 Aligned_cols=52 Identities=31% Similarity=0.362 Sum_probs=38.1
Q ss_pred CceEEe-eCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECC
Q 021570 136 KSILVE-PTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDS 190 (311)
Q Consensus 136 ~~~vv~-aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~ 190 (311)
++.++. ..+|..|.++...|+.+|.+++++.+ ++.|++.++.+|++-+....
T Consensus 144 ~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~~i~~~ 196 (324)
T cd08291 144 AKAVVHTAAASALGRMLVRLCKADGIKVINIVR---RKEQVDLLKKIGAEYVLNSS 196 (324)
T ss_pred CcEEEEccCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEEEECC
Confidence 355554 67889999999999999998555433 45788888889997655443
No 192
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=65.28 E-value=46 Score=29.93 Aligned_cols=56 Identities=20% Similarity=0.137 Sum_probs=38.9
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCC-CHHHHHHHHhcCCEEEEECCC
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASM-SLERRVLLKAFGAELVLTDSA 191 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~-~~~k~~~l~~~GA~V~~v~~~ 191 (311)
+..+|++.+|..|.++|......|.+++++-.... .......++.+|.++..+..+
T Consensus 11 k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 67 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKAD 67 (278)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECC
Confidence 36788889999999999999999998777654321 112233455567777665554
No 193
>PRK05876 short chain dehydrogenase; Provisional
Probab=65.21 E-value=39 Score=30.72 Aligned_cols=66 Identities=12% Similarity=0.095 Sum_probs=41.1
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHH
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMS-LERRVLLKAFGAELVLTDSAKGMKGAVQKA 201 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~-~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a 201 (311)
+..+|++.+|.-|.++|..-+..|.+++++...... ......++..|.++..+..|-.-.+.+..+
T Consensus 7 k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~ 73 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHL 73 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHH
Confidence 357888999999999999999999987665422111 112234555677776655443223334433
No 194
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=65.21 E-value=45 Score=30.53 Aligned_cols=51 Identities=22% Similarity=0.353 Sum_probs=38.4
Q ss_pred CCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEE
Q 021570 134 PGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVL 187 (311)
Q Consensus 134 ~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~ 187 (311)
+|+..+|.+.+|..|.+++..|+.+|.+++++.. .++|.+.++.+|++-++
T Consensus 146 ~~~~vlI~ga~g~vg~~~~~~A~~~G~~vi~~~~---~~~~~~~~~~~g~~~~~ 196 (324)
T cd08288 146 GDGPVLVTGAAGGVGSVAVALLARLGYEVVASTG---RPEEADYLRSLGASEII 196 (324)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeC---CHHHHHHHHhcCCCEEE
Confidence 4445566666799999999999999998655543 45778888899985444
No 195
>PRK12939 short chain dehydrogenase; Provisional
Probab=64.82 E-value=42 Score=29.37 Aligned_cols=68 Identities=19% Similarity=0.129 Sum_probs=41.8
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCC-CHHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASM-SLERRVLLKAFGAELVLTDSAKGMKGAVQKAEE 203 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~-~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~ 203 (311)
...+|++.+|.-|.++|......|.+++++..... .......++..|+++..+..+..-.+.++.+.+
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 76 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFD 76 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 36788889999999999999999998766632211 111223445567776665544322344444433
No 196
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=64.79 E-value=41 Score=31.31 Aligned_cols=52 Identities=23% Similarity=0.334 Sum_probs=38.2
Q ss_pred CCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEE
Q 021570 133 TPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVL 187 (311)
Q Consensus 133 ~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~ 187 (311)
.+|+..+|. ..|..|.++...|+.+|.+.++++ +.++.|...++.+|++.+.
T Consensus 162 ~~g~~vlV~-~~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~lg~~~~~ 213 (341)
T PRK05396 162 LVGEDVLIT-GAGPIGIMAAAVAKHVGARHVVIT--DVNEYRLELARKMGATRAV 213 (341)
T ss_pred CCCCeEEEE-CCCHHHHHHHHHHHHcCCCEEEEE--cCCHHHHHHHHHhCCcEEe
Confidence 355555564 579999999999999999644444 3456788888889997544
No 197
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=64.74 E-value=33 Score=29.39 Aligned_cols=95 Identities=17% Similarity=0.195 Sum_probs=57.8
Q ss_pred CCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCC
Q 021570 130 GLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTP 209 (311)
Q Consensus 130 G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~ 209 (311)
+..-.| +.+++..-|+-|.++|..++.+|.+++|+ +..+.+..+....|=++.. .+++. . .
T Consensus 18 ~~~l~G-k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~---e~DPi~alqA~~dGf~v~~------~~~a~-------~-~- 78 (162)
T PF00670_consen 18 NLMLAG-KRVVVIGYGKVGKGIARALRGLGARVTVT---EIDPIRALQAAMDGFEVMT------LEEAL-------R-D- 78 (162)
T ss_dssp -S--TT-SEEEEE--SHHHHHHHHHHHHTT-EEEEE----SSHHHHHHHHHTT-EEE-------HHHHT-------T-T-
T ss_pred ceeeCC-CEEEEeCCCcccHHHHHHHhhCCCEEEEE---ECChHHHHHhhhcCcEecC------HHHHH-------h-h-
Confidence 333344 67999999999999999999999998887 4467777777778888753 22222 1 2
Q ss_pred CceeeCCCCCCcchHhhHHHHHHHHHHHcCCCCCEEEEccChh
Q 021570 210 NAYMLQQFDNPANPKIHYETTGPEIWEDTRGKVDIFIGGIGTG 252 (311)
Q Consensus 210 ~~~~~~~~~n~~~~~~G~~t~a~Ei~~Ql~~~pD~vv~pvG~G 252 (311)
.-+++.-..+...+ -.|.++|++ -++|++.+|.-
T Consensus 79 adi~vtaTG~~~vi-------~~e~~~~mk--dgail~n~Gh~ 112 (162)
T PF00670_consen 79 ADIFVTATGNKDVI-------TGEHFRQMK--DGAILANAGHF 112 (162)
T ss_dssp -SEEEE-SSSSSSB--------HHHHHHS---TTEEEEESSSS
T ss_pred CCEEEECCCCcccc-------CHHHHHHhc--CCeEEeccCcC
Confidence 23555444444433 357788885 47888887753
No 198
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=64.65 E-value=48 Score=29.09 Aligned_cols=68 Identities=15% Similarity=0.136 Sum_probs=44.0
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCC--HHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMS--LERRVLLKAFGAELVLTDSAKGMKGAVQKAEE 203 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~--~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~ 203 (311)
...+|++.+|--|.++|......|.++++....... ......++..|.++..+..|....+.++.+.+
T Consensus 7 ~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 76 (247)
T PRK12935 7 KVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVE 76 (247)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 367888999999999999999999987765432211 12224455678888777655433344444433
No 199
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=64.55 E-value=51 Score=30.35 Aligned_cols=52 Identities=13% Similarity=-0.081 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEEC
Q 021570 116 DRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMP 167 (311)
Q Consensus 116 dRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p 167 (311)
-||..+.+..+.+.-.......+|+.-..||-|..+|.+...+|.+++.+..
T Consensus 18 g~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD 69 (254)
T cd05313 18 GYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSD 69 (254)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 5778888877765443333347899999999999999999999999886654
No 200
>PRK06182 short chain dehydrogenase; Validated
Probab=64.31 E-value=99 Score=27.70 Aligned_cols=53 Identities=23% Similarity=0.239 Sum_probs=39.4
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCC
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSA 191 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~ 191 (311)
+..+|++++|.-|.++|......|.+++++... ..++..+...+.+++..|-.
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~---~~~l~~~~~~~~~~~~~Dv~ 56 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGYTVYGAARR---VDKMEDLASLGVHPLSLDVT 56 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHhCCCeEEEeeCC
Confidence 367888999999999999999999988776543 34455555567777776654
No 201
>PRK07454 short chain dehydrogenase; Provisional
Probab=64.21 E-value=34 Score=29.94 Aligned_cols=55 Identities=18% Similarity=0.184 Sum_probs=36.7
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhcCCEEEEECCC
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMS-LERRVLLKAFGAELVLTDSA 191 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~-~~k~~~l~~~GA~V~~v~~~ 191 (311)
..+|++.+|..|.+++......|.+++++...... ......++..+.++..+..+
T Consensus 8 ~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 63 (241)
T PRK07454 8 RALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSID 63 (241)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEcc
Confidence 56888899999999999999999987776532211 11222344556666555444
No 202
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=63.83 E-value=46 Score=29.11 Aligned_cols=67 Identities=18% Similarity=0.195 Sum_probs=42.5
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMS-LERRVLLKAFGAELVLTDSAKGMKGAVQKAEE 203 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~-~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~ 203 (311)
..+|++.+|..|.+++......|.+++++.....+ ......++..|.+++.+..+..-.+.++.+.+
T Consensus 9 ~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 76 (239)
T PRK07666 9 NALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIE 76 (239)
T ss_pred EEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHH
Confidence 57888899999999999988999987776543211 11223445567777766554322334444433
No 203
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=63.78 E-value=1.3e+02 Score=28.36 Aligned_cols=169 Identities=13% Similarity=0.125 Sum_probs=85.6
Q ss_pred cccCCCeEEEeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeC-cChHHHHHHHHHHHcCCeEEEEECCC---
Q 021570 94 VKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPT-SGNTGIGLAFIAASKGYKLILTMPAS--- 169 (311)
Q Consensus 94 ~~~~g~~l~vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aS-sGN~g~AlA~~aa~~Gi~~~vv~p~~--- 169 (311)
.++.|.++.+. .|+..-.. .-...+..+.++|. +.|+... ..+.-...-..+...|++++.+-...
T Consensus 49 a~~~G~~v~~~----~~~~~d~~-~q~~~i~~li~~~v-----dgIiv~~~d~~al~~~l~~a~~~gIpVV~~d~~~~~~ 118 (336)
T PRK15408 49 GKELGVDVTYD----GPTEPSVS-GQVQLINNFVNQGY-----NAIIVSAVSPDGLCPALKRAMQRGVKVLTWDSDTKPE 118 (336)
T ss_pred HHHhCCEEEEE----CCCCCCHH-HHHHHHHHHHHcCC-----CEEEEecCCHHHHHHHHHHHHHCCCeEEEeCCCCCCc
Confidence 34556666542 23221122 22356677777886 4455543 33433455556778899988874321
Q ss_pred -----C---CH---HHH--HHH-HhcC---CEEEEECCCCCh---HHHHHHHHH-HHHhCCCceeeCCCCCCcchHhhHH
Q 021570 170 -----M---SL---ERR--VLL-KAFG---AELVLTDSAKGM---KGAVQKAEE-ILNSTPNAYMLQQFDNPANPKIHYE 228 (311)
Q Consensus 170 -----~---~~---~k~--~~l-~~~G---A~V~~v~~~~~~---~~a~~~a~~-~~~~~~~~~~~~~~~n~~~~~~G~~ 228 (311)
+ .. .+. +.+ +.+| .+|..+.+..+. .+..+-..+ +.++.++...+......+....++.
T Consensus 119 ~~~~~V~~~~~~~~G~~~~~~l~~~l~~g~gki~il~g~~~~~~~~~r~~g~~~~l~~~~p~~~vv~~~~~~~d~~~a~~ 198 (336)
T PRK15408 119 CRSYYINQGTPEQLGSMLVEMAAKQVGKDKAKVAFFYSSPTVTDQNQWVKEAKAKIAKEHPGWEIVTTQFGYNDATKSLQ 198 (336)
T ss_pred cceEEEecCCHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCccHHHHHHHHHHHHHhhCCCCEEEeecCCCCcHHHHHH
Confidence 0 11 111 111 2233 577665443211 122222222 2234455555543222222222433
Q ss_pred HHHHHHHHHcCCCCCEEEEccChhhHHHHHHHHHHhcCC-CCEEEEEeC
Q 021570 229 TTGPEIWEDTRGKVDIFIGGIGTGGTISGAGRYLKEKNP-NIKVIIFVL 276 (311)
Q Consensus 229 t~a~Ei~~Ql~~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p-~~~iigVe~ 276 (311)
...++++.-+ ++|.||++ +...+.|+.+++++.+. ++.|+|++-
T Consensus 199 -~~~~lL~~~p-di~aI~~~--~~~~~~Ga~~Al~~~g~~~v~VvG~D~ 243 (336)
T PRK15408 199 -TAEGILKAYP-DLDAIIAP--DANALPAAAQAAENLKRDKVAIVGFST 243 (336)
T ss_pred -HHHHHHHHCC-CCcEEEEC--CCccHHHHHHHHHhCCCCCEEEEEeCC
Confidence 4556776654 68999987 34445588899988653 678888873
No 204
>PRK05867 short chain dehydrogenase; Provisional
Probab=63.66 E-value=42 Score=29.70 Aligned_cols=56 Identities=14% Similarity=0.102 Sum_probs=37.2
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhcCCEEEEECCC
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMS-LERRVLLKAFGAELVLTDSA 191 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~-~~k~~~l~~~GA~V~~v~~~ 191 (311)
+..+|++.+|.-|.++|..-...|.+++++-..... ......++..|.++..+..+
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D 66 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCD 66 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 367888999999999999999999987665432111 11223455567776655444
No 205
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=63.60 E-value=67 Score=29.23 Aligned_cols=57 Identities=26% Similarity=0.307 Sum_probs=40.8
Q ss_pred HcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEE
Q 021570 128 QKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVL 187 (311)
Q Consensus 128 ~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~ 187 (311)
+.+.+.+|...+|...+|..|.+++..|+.+|.+.++.... ..+.+.++.+|++-+.
T Consensus 132 ~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~~ 188 (323)
T cd05282 132 EYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRR---DEQVEELKALGADEVI 188 (323)
T ss_pred HhccCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecC---hHHHHHHHhcCCCEEe
Confidence 34555667566666677999999999999999997665443 3456677778875433
No 206
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=63.57 E-value=95 Score=27.70 Aligned_cols=57 Identities=32% Similarity=0.429 Sum_probs=41.2
Q ss_pred cCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEE
Q 021570 129 KGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLT 188 (311)
Q Consensus 129 ~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v 188 (311)
.+.+.+|...+|...+|..|.+++..|+.+|.+++++. .+..+.+.++.+|++-+..
T Consensus 131 ~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~---~~~~~~~~~~~~g~~~~~~ 187 (320)
T cd05286 131 TYPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTV---SSEEKAELARAAGADHVIN 187 (320)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEc---CCHHHHHHHHHCCCCEEEe
Confidence 45566676666666689999999999999999865553 2456677777888754443
No 207
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=63.31 E-value=28 Score=33.36 Aligned_cols=55 Identities=27% Similarity=0.370 Sum_probs=41.6
Q ss_pred CCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEE
Q 021570 130 GLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVL 187 (311)
Q Consensus 130 G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~ 187 (311)
..+.+|+..+|.+.+|..|.+++..|+.+|.+.+++. .+..+...++.+|++.+.
T Consensus 189 ~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~---~s~~~~~~~~~~G~~~~i 243 (393)
T cd08246 189 NTVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVV---SSEEKAEYCRALGAEGVI 243 (393)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEe---CCHHHHHHHHHcCCCEEE
Confidence 3456665656666679999999999999999976553 356788888889986543
No 208
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=63.24 E-value=1e+02 Score=27.73 Aligned_cols=58 Identities=22% Similarity=0.345 Sum_probs=41.6
Q ss_pred HHcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEE
Q 021570 127 EQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVL 187 (311)
Q Consensus 127 ~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~ 187 (311)
.+.+.+.+|+..+|.+.+|..|.+++..++.+|.+++++.. +..+...++.+|++.+.
T Consensus 132 ~~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~~ 189 (325)
T TIGR02824 132 FQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAG---SDEKCAACEALGADIAI 189 (325)
T ss_pred HHhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEEE
Confidence 34566777767777777899999999999999998765543 24455566778875443
No 209
>PRK06172 short chain dehydrogenase; Provisional
Probab=63.11 E-value=43 Score=29.55 Aligned_cols=67 Identities=19% Similarity=0.219 Sum_probs=42.7
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHHH
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMS-LERRVLLKAFGAELVLTDSAKGMKGAVQKAE 202 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~-~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~ 202 (311)
+..+|++.+|.-|.++|......|.+++++...... ......++..|.++..+..+-.-.+.++.+.
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~ 75 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALV 75 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHH
Confidence 367888899999999999999999987766533211 1223455667777766544432233444433
No 210
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=63.01 E-value=72 Score=29.73 Aligned_cols=88 Identities=11% Similarity=0.008 Sum_probs=52.5
Q ss_pred ccccCCCeEE--EeeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCC
Q 021570 93 IVKGCVANIA--AKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASM 170 (311)
Q Consensus 93 l~~~~g~~l~--vK~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~ 170 (311)
..+..|..++ .++|+. ..-+-.=.+...+..+.+.-..+-..+++..-..|+.|.++|..++.+|.+++++-..
T Consensus 108 ~a~~~gi~v~~~~~~~~v--a~~n~~~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~-- 183 (287)
T TIGR02853 108 LAADAGVKLIELFERDDV--AIYNSIPTAEGAIMMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARS-- 183 (287)
T ss_pred HHHHCCCeEEEEEeccce--EEEccHhHHHHHHHHHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCC--
Confidence 3344565554 444433 3333344466666666654211211367888888999999999999999987766432
Q ss_pred CHHHHHHHHhcCCEE
Q 021570 171 SLERRVLLKAFGAEL 185 (311)
Q Consensus 171 ~~~k~~~l~~~GA~V 185 (311)
..+......+|.+.
T Consensus 184 -~~~~~~~~~~g~~~ 197 (287)
T TIGR02853 184 -SADLARITEMGLIP 197 (287)
T ss_pred -HHHHHHHHHCCCee
Confidence 33445555566553
No 211
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=62.95 E-value=1.1e+02 Score=27.69 Aligned_cols=58 Identities=26% Similarity=0.404 Sum_probs=40.0
Q ss_pred HHcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEE
Q 021570 127 EQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVL 187 (311)
Q Consensus 127 ~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~ 187 (311)
.+...+.+|+..+|. .+|-.|.+++..|+.+|.+.++++.. .+.+...++.+|++-+.
T Consensus 122 ~~~~~~~~~~~vlI~-g~g~vg~~~~~la~~~g~~~v~~~~~--~~~~~~~~~~~g~~~~~ 179 (312)
T cd08269 122 FRRGWIRAGKTVAVI-GAGFIGLLFLQLAAAAGARRVIAIDR--RPARLALARELGATEVV 179 (312)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHhCCceEe
Confidence 345566677666666 46889999999999999983333332 35667777888985433
No 212
>PRK07478 short chain dehydrogenase; Provisional
Probab=62.95 E-value=44 Score=29.53 Aligned_cols=56 Identities=20% Similarity=0.185 Sum_probs=37.8
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhcCCEEEEECCC
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMS-LERRVLLKAFGAELVLTDSA 191 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~-~~k~~~l~~~GA~V~~v~~~ 191 (311)
+..+|++.+|.-|.++|..-...|.+++++.....+ ..-...++.+|.++..+..+
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 63 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGD 63 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcC
Confidence 367888889999999999999999987666432111 11223455667777666544
No 213
>PRK05993 short chain dehydrogenase; Provisional
Probab=62.86 E-value=71 Score=28.87 Aligned_cols=53 Identities=30% Similarity=0.271 Sum_probs=39.7
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCC
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSA 191 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~ 191 (311)
+..+|++.+|..|.++|...+..|.+++++... ..++..+...|.+++.+|-.
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~---~~~~~~l~~~~~~~~~~Dl~ 57 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGWRVFATCRK---EEDVAALEAEGLEAFQLDYA 57 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHCCceEEEccCC
Confidence 357888999999999999999999987776543 34555566667777766654
No 214
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=62.84 E-value=44 Score=31.72 Aligned_cols=57 Identities=23% Similarity=0.349 Sum_probs=41.0
Q ss_pred HcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEE
Q 021570 128 QKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVL 187 (311)
Q Consensus 128 ~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~ 187 (311)
+.+.+++|+..+|. .+|..|.+++..|+.+|.+.++.+. .+..|++.++.+|++.++
T Consensus 180 ~~~~~~~g~~VlV~-G~G~vG~~a~~~ak~~G~~~vi~~~--~~~~~~~~~~~lGa~~~i 236 (368)
T cd08300 180 NTAKVEPGSTVAVF-GLGAVGLAVIQGAKAAGASRIIGID--INPDKFELAKKFGATDCV 236 (368)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEe--CCHHHHHHHHHcCCCEEE
Confidence 44566777565555 5799999999999999995444442 245678888889997554
No 215
>PRK12744 short chain dehydrogenase; Provisional
Probab=62.26 E-value=50 Score=29.31 Aligned_cols=66 Identities=29% Similarity=0.192 Sum_probs=41.7
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCC-CC----HHHHHHHHhcCCEEEEECCCCChHHHHHHH
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPAS-MS----LERRVLLKAFGAELVLTDSAKGMKGAVQKA 201 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~-~~----~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a 201 (311)
+..+|++.+|.-|.++|..-...|.+++++.... .. ....+.++..|.++..+..|-.-.+.++.+
T Consensus 9 k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~ 79 (257)
T PRK12744 9 KVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKL 79 (257)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHH
Confidence 3678888999999999999999999977665321 11 122334555677776655443223344433
No 216
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=62.24 E-value=49 Score=29.01 Aligned_cols=55 Identities=15% Similarity=0.216 Sum_probs=38.6
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCC--CHHHHHHHHhcCCEEEEECCC
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASM--SLERRVLLKAFGAELVLTDSA 191 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~--~~~k~~~l~~~GA~V~~v~~~ 191 (311)
..+|++.+|.-|.++|......|.+++++..... .......++..|.+++....+
T Consensus 5 ~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 61 (246)
T PRK12938 5 IAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEGN 61 (246)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcC
Confidence 5688999999999999999999998766543221 122344556678887765444
No 217
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=62.20 E-value=29 Score=29.04 Aligned_cols=48 Identities=23% Similarity=0.223 Sum_probs=37.5
Q ss_pred EEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCC
Q 021570 139 LVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSA 191 (311)
Q Consensus 139 vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~ 191 (311)
+|.+.+|+.|..++......|.++++++....+..+ ..+.+++..+-.
T Consensus 2 ~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-----~~~~~~~~~d~~ 49 (183)
T PF13460_consen 2 LVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-----SPGVEIIQGDLF 49 (183)
T ss_dssp EEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-----CTTEEEEESCTT
T ss_pred EEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-----ccccccceeeeh
Confidence 677889999999999999999999999976543333 556676666543
No 218
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=62.01 E-value=54 Score=28.62 Aligned_cols=56 Identities=25% Similarity=0.146 Sum_probs=37.7
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCC-CHHHHHHHHhcCCEEEEECCC
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASM-SLERRVLLKAFGAELVLTDSA 191 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~-~~~k~~~l~~~GA~V~~v~~~ 191 (311)
...+|++.+|-.|.++|......|.+++++..... .......++..|+++..+..+
T Consensus 6 ~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 62 (253)
T PRK08217 6 KVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAAN 62 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcC
Confidence 36788888899999999999999998766543321 122233455568877655544
No 219
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=61.87 E-value=39 Score=30.18 Aligned_cols=110 Identities=15% Similarity=0.147 Sum_probs=62.8
Q ss_pred HHHHHHHHHcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCC---HHHHHHHHhcCC-EEEEECCCCChH
Q 021570 120 FSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMS---LERRVLLKAFGA-ELVLTDSAKGMK 195 (311)
Q Consensus 120 ~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~---~~k~~~l~~~GA-~V~~v~~~~~~~ 195 (311)
-+++.+..+.=.+++| ..|.+-.+| .|...|..|+..| .|+.=+..+ ..-.+.++.+|- +|...-+|.
T Consensus 58 P~~vA~m~~~L~~~~g-~~VLEIGtG-sGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG--- 129 (209)
T COG2518 58 PHMVARMLQLLELKPG-DRVLEIGTG-SGYQAAVLARLVG---RVVSIERIEELAEQARRNLETLGYENVTVRHGDG--- 129 (209)
T ss_pred cHHHHHHHHHhCCCCC-CeEEEECCC-chHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCc---
Confidence 3455555555556666 567777776 5777788888777 444333221 122334666776 465554442
Q ss_pred HHHHHHHHHHHhCCCceeeCCCCCCcchHhhHHHHHHHHHHHcCCCCCEEEEccCh
Q 021570 196 GAVQKAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEIWEDTRGKVDIFIGGIGT 251 (311)
Q Consensus 196 ~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~t~a~Ei~~Ql~~~pD~vv~pvG~ 251 (311)
..|+--..+||-.... ++..++-.-+++|+. .--.+|+|+|+
T Consensus 130 ------------~~G~~~~aPyD~I~Vt-aaa~~vP~~Ll~QL~-~gGrlv~PvG~ 171 (209)
T COG2518 130 ------------SKGWPEEAPYDRIIVT-AAAPEVPEALLDQLK-PGGRLVIPVGS 171 (209)
T ss_pred ------------ccCCCCCCCcCEEEEe-eccCCCCHHHHHhcc-cCCEEEEEEcc
Confidence 1133333455544443 354555567799995 34578999983
No 220
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=61.85 E-value=1.1e+02 Score=28.14 Aligned_cols=56 Identities=29% Similarity=0.402 Sum_probs=41.7
Q ss_pred cCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEE
Q 021570 129 KGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVL 187 (311)
Q Consensus 129 ~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~ 187 (311)
.+.+.+|+..+|.+.+|-.|.+++..|+.+|.+++++.. +..+...++.+|++-+.
T Consensus 134 ~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~v~ 189 (329)
T cd08250 134 VGEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCS---SDEKAEFLKSLGCDRPI 189 (329)
T ss_pred hcCCCCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeC---cHHHHHHHHHcCCceEE
Confidence 356677767777777899999999999999998655543 34566677788875443
No 221
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=61.80 E-value=50 Score=31.30 Aligned_cols=57 Identities=21% Similarity=0.285 Sum_probs=41.1
Q ss_pred HcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEE
Q 021570 128 QKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVL 187 (311)
Q Consensus 128 ~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~ 187 (311)
+.+.+.+|++.+|. .+|..|.+++..|+.+|...++++.. ...|++.++.+|++-+.
T Consensus 178 ~~~~~~~g~~vlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~~--~~~~~~~~~~~ga~~~i 234 (365)
T cd08277 178 NTAKVEPGSTVAVF-GLGAVGLSAIMGAKIAGASRIIGVDI--NEDKFEKAKEFGATDFI 234 (365)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCCcEe
Confidence 45667777665555 57999999999999999953343322 46788888889986443
No 222
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=61.51 E-value=1.1e+02 Score=27.80 Aligned_cols=57 Identities=25% Similarity=0.412 Sum_probs=41.0
Q ss_pred HHcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEE
Q 021570 127 EQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELV 186 (311)
Q Consensus 127 ~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~ 186 (311)
.+.+.+.++...+|...+|..|.+++..|+.+|.+++++.+ ...+...++.+|++-+
T Consensus 135 ~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~---~~~~~~~~~~~g~~~~ 191 (324)
T cd08244 135 LDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAG---GPAKTALVRALGADVA 191 (324)
T ss_pred HHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCCCEE
Confidence 34556677766677777899999999999999998655432 2445666777888543
No 223
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=61.43 E-value=1.2e+02 Score=26.97 Aligned_cols=57 Identities=25% Similarity=0.360 Sum_probs=41.7
Q ss_pred HHcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEE
Q 021570 127 EQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELV 186 (311)
Q Consensus 127 ~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~ 186 (311)
.+.+.+.+|+..++...+|..|.++...++.+|++.+++.+. ..+...++.+|++-+
T Consensus 113 l~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~ 169 (303)
T cd08251 113 FARAGLAKGEHILIQTATGGTGLMAVQLARLKGAEIYATASS---DDKLEYLKQLGVPHV 169 (303)
T ss_pred HHhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEcCC---HHHHHHHHHcCCCEE
Confidence 346677777666666778999999999999999986655333 456667777887533
No 224
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=61.33 E-value=11 Score=32.49 Aligned_cols=41 Identities=22% Similarity=0.349 Sum_probs=31.5
Q ss_pred HHHHHHHHHcCCCCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEe
Q 021570 229 TTGPEIWEDTRGKVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFV 275 (311)
Q Consensus 229 t~a~Ei~~Ql~~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe 275 (311)
.++.+|.+| +..||.|+.=.|=|.++ .+|+.+|++++++-.
T Consensus 55 ~a~~~L~~~-Gf~PDvI~~H~GWGe~L-----flkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 55 RAARQLRAQ-GFVPDVIIAHPGWGETL-----FLKDVFPDAPLIGYF 95 (171)
T ss_pred HHHHHHHHc-CCCCCEEEEcCCcchhh-----hHHHhCCCCcEEEEE
Confidence 444555555 56799999999988877 589999999988753
No 225
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=61.28 E-value=70 Score=28.11 Aligned_cols=66 Identities=20% Similarity=0.242 Sum_probs=42.2
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCC--HHHHHHHHhcCCEEEEECCCCChHHHHHHHH
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMS--LERRVLLKAFGAELVLTDSAKGMKGAVQKAE 202 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~--~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~ 202 (311)
..+|++.+|.-|.++|..-...|.+++++.....+ ......++..+.++..+..+-.-.+.+..+.
T Consensus 4 ~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 71 (256)
T PRK12745 4 VALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAML 71 (256)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHH
Confidence 56888999999999999999999988776533221 2233445556777666554432233334333
No 226
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=61.19 E-value=53 Score=29.02 Aligned_cols=67 Identities=21% Similarity=0.107 Sum_probs=41.3
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHHH
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMS-LERRVLLKAFGAELVLTDSAKGMKGAVQKAE 202 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~-~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~ 202 (311)
+..+|++.+|.-|.++|......|.+++++--.... ......++..|.++..+..+-.-.+.++.+.
T Consensus 10 k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~ 77 (254)
T PRK08085 10 KNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAI 77 (254)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHH
Confidence 367899999999999999999999887765432111 1122344555767666554432234444433
No 227
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=61.12 E-value=51 Score=28.75 Aligned_cols=67 Identities=18% Similarity=0.168 Sum_probs=42.8
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHHH
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMS-LERRVLLKAFGAELVLTDSAKGMKGAVQKAE 202 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~-~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~ 202 (311)
.+.+|++.+|..|.+++......|.+++++.....+ ......++..+.++..+..+-.-.+.++.+.
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~ 74 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAV 74 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHH
Confidence 367888899999999999999999987776543211 2233445666777766655432233444443
No 228
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=60.93 E-value=75 Score=24.47 Aligned_cols=50 Identities=22% Similarity=0.236 Sum_probs=35.9
Q ss_pred EEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCC
Q 021570 139 LVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSA 191 (311)
Q Consensus 139 vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~ 191 (311)
|+....|+.|..++..-...+.+++++-. .+.+...++..|.+++.-+..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~---d~~~~~~~~~~~~~~i~gd~~ 50 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDR---DPERVEELREEGVEVIYGDAT 50 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEES---SHHHHHHHHHTTSEEEES-TT
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEEC---CcHHHHHHHhcccccccccch
Confidence 45567789999999999987777877743 356677788888777665544
No 229
>PRK06194 hypothetical protein; Provisional
Probab=60.93 E-value=62 Score=29.17 Aligned_cols=56 Identities=25% Similarity=0.280 Sum_probs=38.0
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhcCCEEEEECCC
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMS-LERRVLLKAFGAELVLTDSA 191 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~-~~k~~~l~~~GA~V~~v~~~ 191 (311)
...+|++.+|.-|.++|......|.+++++-..... ......+...|.++..+..+
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 63 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTD 63 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECC
Confidence 367899999999999999999999987665432111 12233444557787666555
No 230
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=60.90 E-value=96 Score=28.49 Aligned_cols=55 Identities=24% Similarity=0.370 Sum_probs=39.6
Q ss_pred HcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCE
Q 021570 128 QKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAE 184 (311)
Q Consensus 128 ~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~ 184 (311)
..+.+.+|...+|. .+|..|.+++..|+.+|+++++ +-.+....+...++.+|++
T Consensus 158 ~~~~~~~g~~vlI~-g~g~~g~~~~~la~~~G~~v~~-~~~~~~~~~~~~~~~~g~~ 212 (306)
T cd08258 158 ERSGIRPGDTVVVF-GPGPIGLLAAQVAKLQGATVVV-VGTEKDEVRLDVAKELGAD 212 (306)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCEEEE-ECCCCCHHHHHHHHHhCCc
Confidence 34556666566665 4799999999999999999543 3233446777888889985
No 231
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=60.89 E-value=63 Score=30.08 Aligned_cols=53 Identities=28% Similarity=0.328 Sum_probs=39.0
Q ss_pred CCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEE
Q 021570 132 ITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVL 187 (311)
Q Consensus 132 ~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~ 187 (311)
+.+|+..+|.+ +|-.|.+++..|+.+|.+.++++ +.++.+...++.+|++.+.
T Consensus 159 ~~~g~~vlI~~-~g~vg~~a~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~~~v 211 (340)
T TIGR00692 159 PISGKSVLVTG-AGPIGLMAIAVAKASGAYPVIVS--DPNEYRLELAKKMGATYVV 211 (340)
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCCcEEE
Confidence 45565666654 68899999999999999855555 3467888888889986443
No 232
>PRK08278 short chain dehydrogenase; Provisional
Probab=60.85 E-value=79 Score=28.50 Aligned_cols=66 Identities=17% Similarity=0.231 Sum_probs=42.9
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCC--------HHHHHHHHhcCCEEEEECCCCChHHHHHHH
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMS--------LERRVLLKAFGAELVLTDSAKGMKGAVQKA 201 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~--------~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a 201 (311)
+..+|++.+|--|.++|......|.+++++.....+ ..-...++..|.+++.+..+-.-.+.++.+
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~ 80 (273)
T PRK08278 7 KTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAA 80 (273)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHH
Confidence 367888889999999999999999998877643221 111234566787776655443223334333
No 233
>PRK06128 oxidoreductase; Provisional
Probab=60.49 E-value=81 Score=28.94 Aligned_cols=56 Identities=20% Similarity=0.206 Sum_probs=40.1
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECC-CC--CHHHHHHHHhcCCEEEEECCC
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPA-SM--SLERRVLLKAFGAELVLTDSA 191 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~-~~--~~~k~~~l~~~GA~V~~v~~~ 191 (311)
+..+|++.+|--|.++|..-...|.++++.... .. .......++..|.+++.+..|
T Consensus 56 k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 114 (300)
T PRK06128 56 RKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGD 114 (300)
T ss_pred CEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecC
Confidence 367999999999999999999999998776432 21 122344566778887766554
No 234
>PRK07832 short chain dehydrogenase; Provisional
Probab=60.45 E-value=1.1e+02 Score=27.34 Aligned_cols=30 Identities=27% Similarity=0.308 Sum_probs=24.9
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEE
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTM 166 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~ 166 (311)
+.+|++.+|..|.++|...+..|.+++++-
T Consensus 2 ~vlItGas~giG~~la~~la~~G~~vv~~~ 31 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGAELFLTD 31 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 458888999999999999999998866554
No 235
>PRK07806 short chain dehydrogenase; Provisional
Probab=60.45 E-value=81 Score=27.62 Aligned_cols=56 Identities=20% Similarity=0.203 Sum_probs=37.7
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCC-HH-HHHHHHhcCCEEEEECCC
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMS-LE-RRVLLKAFGAELVLTDSA 191 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~-~~-k~~~l~~~GA~V~~v~~~ 191 (311)
+..+|++.+|.-|.+++......|.+++++...... .. -...++..|.++..+..|
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D 64 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGAD 64 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcC
Confidence 367888899999999999999999998776543211 11 123345557776655544
No 236
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=60.33 E-value=1.1e+02 Score=27.84 Aligned_cols=58 Identities=22% Similarity=0.324 Sum_probs=40.6
Q ss_pred HcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHh-cCCEEEEE
Q 021570 128 QKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKA-FGAELVLT 188 (311)
Q Consensus 128 ~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~-~GA~V~~v 188 (311)
+.+.+.+|+..+|.+.+|-.|.+++..|+.+|.+++++.+ ...+...++. +|++-+..
T Consensus 139 ~~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~~g~~~~~~ 197 (329)
T cd05288 139 EIGKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAG---SDEKCRWLVEELGFDAAIN 197 (329)
T ss_pred hccCCCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhhcCCceEEe
Confidence 3355666656666666899999999999999997655533 3456666666 88854433
No 237
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=60.30 E-value=78 Score=27.34 Aligned_cols=55 Identities=24% Similarity=0.228 Sum_probs=38.1
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHH-HHHHHhcCCEEEEECCC
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLER-RVLLKAFGAELVLTDSA 191 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k-~~~l~~~GA~V~~v~~~ 191 (311)
+.+|++.+|..|..++......|.+++++........+ ...++..|.++..+..+
T Consensus 7 ~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 62 (246)
T PRK05653 7 TALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFD 62 (246)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEcc
Confidence 57888899999999999988999996555433222222 34455678777765544
No 238
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=60.18 E-value=51 Score=28.86 Aligned_cols=66 Identities=17% Similarity=0.082 Sum_probs=41.4
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHH
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMS-LERRVLLKAFGAELVLTDSAKGMKGAVQKA 201 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~-~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a 201 (311)
+..+|++.+|.-|.++|......|.+++++...... ......++..+.++..+..+..-.+.++.+
T Consensus 4 ~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 70 (250)
T TIGR03206 4 KTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTA 70 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHH
Confidence 367889999999999999999999987776533211 111223455566666655543223344443
No 239
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=60.13 E-value=85 Score=28.96 Aligned_cols=59 Identities=24% Similarity=0.214 Sum_probs=41.7
Q ss_pred HHcCCCCCCCceEEeeCcChHHHHHHHHHHH-cCCeEEEEECCCCCHHHHHHHHhcCCEEEEEC
Q 021570 127 EQKGLITPGKSILVEPTSGNTGIGLAFIAAS-KGYKLILTMPASMSLERRVLLKAFGAELVLTD 189 (311)
Q Consensus 127 ~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~-~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~ 189 (311)
.+...+.+|+..+|.+ +|-.|.+++..|+. +|.+++++.. ++.+++.++.+|++.+...
T Consensus 155 ~~~~~~~~g~~vlV~g-~g~vG~~~~~la~~~~g~~v~~~~~---~~~~~~~~~~~g~~~v~~~ 214 (338)
T PRK09422 155 IKVSGIKPGQWIAIYG-AGGLGNLALQYAKNVFNAKVIAVDI---NDDKLALAKEVGADLTINS 214 (338)
T ss_pred HHhcCCCCCCEEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC---ChHHHHHHHHcCCcEEecc
Confidence 3445567776666666 78899999999997 4998655533 3567888888998765443
No 240
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=59.93 E-value=1.1e+02 Score=27.30 Aligned_cols=55 Identities=27% Similarity=0.363 Sum_probs=40.2
Q ss_pred CCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEE
Q 021570 130 GLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVL 187 (311)
Q Consensus 130 G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~ 187 (311)
+.+.+|+..++.+.+|..|.+++..++.+|.++++..+. ..+.+.++.+|++-+.
T Consensus 140 ~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~~ 194 (325)
T cd08253 140 AGAKAGETVLVHGGSGAVGHAAVQLARWAGARVIATASS---AEGAELVRQAGADAVF 194 (325)
T ss_pred hCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHcCCCEEE
Confidence 556666677777778999999999999999886655442 4566666778875443
No 241
>PRK06701 short chain dehydrogenase; Provisional
Probab=59.84 E-value=70 Score=29.31 Aligned_cols=65 Identities=14% Similarity=0.161 Sum_probs=43.0
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCC--HHHHHHHHhcCCEEEEECCCCChHHHHHHH
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMS--LERRVLLKAFGAELVLTDSAKGMKGAVQKA 201 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~--~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a 201 (311)
..+|++.+|--|.++|......|.+++++...... ......++..|.++..+..|-.-.+.++.+
T Consensus 48 ~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 114 (290)
T PRK06701 48 VALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDA 114 (290)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHH
Confidence 57888899999999999999999998776543221 223345566787776655443223444443
No 242
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=59.73 E-value=85 Score=29.32 Aligned_cols=47 Identities=17% Similarity=0.140 Sum_probs=36.4
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEE
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELV 186 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~ 186 (311)
+.+..-..|+.|.+++..++.+|.+++++-.. +.+..+.+.+|++.+
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~---~~~~~~~~~~G~~~~ 199 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVGARK---SAHLARITEMGLSPF 199 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHcCCeee
Confidence 56777778999999999999999877776433 455667778888754
No 243
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=59.71 E-value=37 Score=28.70 Aligned_cols=51 Identities=27% Similarity=0.346 Sum_probs=41.0
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECC
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDS 190 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~ 190 (311)
..|+...+||.|.+.+..+..+|.+.+++ +....++...+..++..+.++.
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~---d~~~~~~~~~~~~~~~~i~~~~ 71 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVP---DERPERLRQLESLGAYFIEVDY 71 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEE---ESSHHHHHHHHHTTTEESEETT
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEec---cCCHHHHHhhhcccCceEEEcc
Confidence 46888899999999999999999997776 3356778888889999888853
No 244
>PRK09134 short chain dehydrogenase; Provisional
Probab=59.54 E-value=87 Score=27.75 Aligned_cols=68 Identities=16% Similarity=0.208 Sum_probs=42.6
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCH--HHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSL--ERRVLLKAFGAELVLTDSAKGMKGAVQKAEE 203 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~--~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~ 203 (311)
+..+|++.+|.-|.+++......|.+++++...+... .-...++..|.++..+..|-.-.+.+..+.+
T Consensus 10 k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 79 (258)
T PRK09134 10 RAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAEVRALVA 79 (258)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHH
Confidence 3678999999999999999999999887765432211 1122344457777665544322334444433
No 245
>PRK10083 putative oxidoreductase; Provisional
Probab=59.35 E-value=91 Score=28.81 Aligned_cols=60 Identities=20% Similarity=0.212 Sum_probs=42.7
Q ss_pred HHHcCCCCCCCceEEeeCcChHHHHHHHHHHH-cCCeEEEEECCCCCHHHHHHHHhcCCEEEEE
Q 021570 126 AEQKGLITPGKSILVEPTSGNTGIGLAFIAAS-KGYKLILTMPASMSLERRVLLKAFGAELVLT 188 (311)
Q Consensus 126 A~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~-~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v 188 (311)
+.+.+.+.+|++.+|.+ .|-.|.+++..|+. +|.+.++.+.. .+.|...++.+|++-++.
T Consensus 152 ~~~~~~~~~g~~vlI~g-~g~vG~~~~~~a~~~~G~~~v~~~~~--~~~~~~~~~~~Ga~~~i~ 212 (339)
T PRK10083 152 VTGRTGPTEQDVALIYG-AGPVGLTIVQVLKGVYNVKAVIVADR--IDERLALAKESGADWVIN 212 (339)
T ss_pred HHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHhCCCCEEEEEcC--CHHHHHHHHHhCCcEEec
Confidence 34556677775555555 78888888888886 69886666543 568888888999975543
No 246
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=59.35 E-value=63 Score=29.20 Aligned_cols=54 Identities=26% Similarity=0.422 Sum_probs=39.7
Q ss_pred cCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEE
Q 021570 129 KGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELV 186 (311)
Q Consensus 129 ~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~ 186 (311)
.+.+.+|...++.+.+|..|.+++..|+.+|.+++++.+. .+...++.+|++-+
T Consensus 138 ~~~~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~----~~~~~~~~~g~~~~ 191 (319)
T cd08267 138 AGKVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST----RNAELVRSLGADEV 191 (319)
T ss_pred hcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH----HHHHHHHHcCCCEe
Confidence 3445666666666677999999999999999987666532 56677788887433
No 247
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=59.22 E-value=29 Score=36.11 Aligned_cols=77 Identities=22% Similarity=0.223 Sum_probs=51.9
Q ss_pred CchhhHHHHHHHH-HHHHcCC------CCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCC---------C----
Q 021570 112 CSVKDRIGFSMIA-DAEQKGL------ITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASM---------S---- 171 (311)
Q Consensus 112 GS~KdRga~~~v~-~A~~~G~------~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~---------~---- 171 (311)
++.-++.+.-.+. ++.+.|. ..+..+.|+.-.+|-.|.+.|+.+++.|.+++||-.... +
T Consensus 279 ~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l 358 (639)
T PRK12809 279 GAVSIGNLERYITDTALAMGWRPDVSKVVPRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKL 358 (639)
T ss_pred CCcChhHHHHHHHHHHHHhCCCCCCCcccCCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccC
Confidence 4556666554443 3444442 112236788899999999999999999999999853321 1
Q ss_pred -----HHHHHHHHhcCCEEEEE
Q 021570 172 -----LERRVLLKAFGAELVLT 188 (311)
Q Consensus 172 -----~~k~~~l~~~GA~V~~v 188 (311)
......++.+|.+++.-
T Consensus 359 ~~~~~~~~~~~~~~~Gv~~~~~ 380 (639)
T PRK12809 359 DKTVLSQRREIFTAMGIDFHLN 380 (639)
T ss_pred CHHHHHHHHHHHHHCCeEEEcC
Confidence 12456778899988653
No 248
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=59.21 E-value=61 Score=28.47 Aligned_cols=65 Identities=20% Similarity=0.147 Sum_probs=41.4
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHH
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMS-LERRVLLKAFGAELVLTDSAKGMKGAVQKA 201 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~-~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a 201 (311)
..+|++.+|.-|.++|......|.+++++-..... ......++..|.++..+..+-.-.+.+..+
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~ 67 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSA 67 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHH
Confidence 45888899999999999999999987666433211 122345566787776655443223444443
No 249
>PRK07035 short chain dehydrogenase; Provisional
Probab=59.17 E-value=70 Score=28.15 Aligned_cols=55 Identities=18% Similarity=0.111 Sum_probs=36.8
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhcCCEEEEECCC
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMS-LERRVLLKAFGAELVLTDSA 191 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~-~~k~~~l~~~GA~V~~v~~~ 191 (311)
..+|++.+|.-|.+++......|.+++++-..... ....+.+...|.++..+..+
T Consensus 10 ~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 65 (252)
T PRK07035 10 IALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACH 65 (252)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcC
Confidence 67899999999999999999999987766532211 11223344557666554433
No 250
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=59.17 E-value=1.1e+02 Score=26.62 Aligned_cols=55 Identities=33% Similarity=0.517 Sum_probs=37.4
Q ss_pred HcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEE
Q 021570 128 QKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELV 186 (311)
Q Consensus 128 ~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~ 186 (311)
+.+.+.+|.+.++.+.++ .|.+++..++..|.+++++.+. +.+.+.++.+|++.+
T Consensus 128 ~~~~~~~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~ 182 (271)
T cd05188 128 RAGVLKPGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRS---DEKLELAKELGADHV 182 (271)
T ss_pred hccCCCCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCC---HHHHHHHHHhCCcee
Confidence 334445665666666666 9999999999999776666443 456666777776543
No 251
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=59.12 E-value=72 Score=27.96 Aligned_cols=68 Identities=16% Similarity=0.190 Sum_probs=43.4
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCH-HHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSL-ERRVLLKAFGAELVLTDSAKGMKGAVQKAEE 203 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~-~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~ 203 (311)
+..+|++.+|..|.++|..-...|.+++++.....+. .....++..+.++..+..+..-.+.++.+.+
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 73 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGID 73 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 3678888999999999999888999887775443222 2223455567776655544322344444433
No 252
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=59.11 E-value=1.2e+02 Score=28.60 Aligned_cols=73 Identities=19% Similarity=0.197 Sum_probs=51.4
Q ss_pred CCceEEeeCcChHHHHHHHHHHHcCCeEEEEE-CCCCCHHHHHHHHhcC-CEEEEECCCCChHHHHHHHHHHHHhC
Q 021570 135 GKSILVEPTSGNTGIGLAFIAASKGYKLILTM-PASMSLERRVLLKAFG-AELVLTDSAKGMKGAVQKAEEILNST 208 (311)
Q Consensus 135 g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~-p~~~~~~k~~~l~~~G-A~V~~v~~~~~~~~a~~~a~~~~~~~ 208 (311)
|+..+++++++-.|+++|.--+++|-+.++.= -...-.+..+.++..| +.-..+|-.. +++-.+.|.+..++.
T Consensus 38 g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~-~eei~~~a~~Vk~e~ 112 (300)
T KOG1201|consen 38 GEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISD-REEIYRLAKKVKKEV 112 (300)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCCC-HHHHHHHHHHHHHhc
Confidence 34678888999999999999999998555443 2234466677777767 3334566543 677777788877765
No 253
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=58.99 E-value=76 Score=28.23 Aligned_cols=53 Identities=17% Similarity=0.162 Sum_probs=36.1
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHH-hcCCEEEEECCC
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLK-AFGAELVLTDSA 191 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~-~~GA~V~~v~~~ 191 (311)
+..+|++.+|.-|.++|......|.+++++- .+ ..+++.+. .+|.++..+..+
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~-r~--~~~~~~l~~~~~~~~~~~~~D 59 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAEGARVAVLD-KS--AAGLQELEAAHGDAVVGVEGD 59 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEe-CC--HHHHHHHHhhcCCceEEEEec
Confidence 4678889999999999999999999877653 22 23344443 346566554433
No 254
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=58.99 E-value=53 Score=30.16 Aligned_cols=50 Identities=36% Similarity=0.514 Sum_probs=35.7
Q ss_pred HcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCE
Q 021570 128 QKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAE 184 (311)
Q Consensus 128 ~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~ 184 (311)
+...+.+|+..+|...+|..|.+++..|+.+|.+++++. +.+.++.+|++
T Consensus 156 ~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~~-------~~~~~~~~g~~ 205 (325)
T cd08264 156 KTAGLGPGETVVVFGASGNTGIFAVQLAKMMGAEVIAVS-------RKDWLKEFGAD 205 (325)
T ss_pred HhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEe-------HHHHHHHhCCC
Confidence 445667776666666679999999999999999866653 12444556763
No 255
>PRK07890 short chain dehydrogenase; Provisional
Probab=58.98 E-value=52 Score=28.99 Aligned_cols=67 Identities=16% Similarity=0.145 Sum_probs=41.2
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHHH
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMS-LERRVLLKAFGAELVLTDSAKGMKGAVQKAE 202 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~-~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~ 202 (311)
+..+|++.+|.-|.++|......|.+++++-..... ..-...++..|.++..+..+-.-.+.++.+.
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 73 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLV 73 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHH
Confidence 467899999999999999999999987766432111 1112334445666655544432234444443
No 256
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=58.97 E-value=1.6e+02 Score=27.77 Aligned_cols=73 Identities=14% Similarity=0.100 Sum_probs=40.4
Q ss_pred hhhHHHHHHHHHHHHcCCCCCCCceEEee-CcChHHHHHHH--HHHHcCCeEEEEECCCCC--HHHHHHHHhcCCEEEEE
Q 021570 114 VKDRIGFSMIADAEQKGLITPGKSILVEP-TSGNTGIGLAF--IAASKGYKLILTMPASMS--LERRVLLKAFGAELVLT 188 (311)
Q Consensus 114 ~KdRga~~~v~~A~~~G~~~~g~~~vv~a-SsGN~g~AlA~--~aa~~Gi~~~vv~p~~~~--~~k~~~l~~~GA~V~~v 188 (311)
|=.+.....-..+.+.|. ..++.. +..+....+.. .....|...+++.|.+.. ...++.++..|--|+.+
T Consensus 37 f~~~~~~Gi~~aa~~~G~-----~v~~~~~~~~d~~~q~~~i~~li~~~vdgIiv~~~d~~al~~~l~~a~~~gIpVV~~ 111 (336)
T PRK15408 37 FFTSGGNGAKEAGKELGV-----DVTYDGPTEPSVSGQVQLINNFVNQGYNAIIVSAVSPDGLCPALKRAMQRGVKVLTW 111 (336)
T ss_pred HHHHHHHHHHHHHHHhCC-----EEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHCCCeEEEe
Confidence 444444444555666774 333322 33333333322 244567888888876543 45566667778888877
Q ss_pred CCC
Q 021570 189 DSA 191 (311)
Q Consensus 189 ~~~ 191 (311)
+.+
T Consensus 112 d~~ 114 (336)
T PRK15408 112 DSD 114 (336)
T ss_pred CCC
Confidence 654
No 257
>PRK05866 short chain dehydrogenase; Provisional
Probab=58.86 E-value=60 Score=29.87 Aligned_cols=55 Identities=15% Similarity=0.068 Sum_probs=36.9
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhcCCEEEEECCC
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMS-LERRVLLKAFGAELVLTDSA 191 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~-~~k~~~l~~~GA~V~~v~~~ 191 (311)
..+|++.+|.-|.++|...+..|.+++++...... ......+...|.++..+..|
T Consensus 42 ~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~D 97 (293)
T PRK05866 42 RILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCD 97 (293)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 56888999999999999999999988776543211 11223444456666555444
No 258
>PLN00175 aminotransferase family protein; Provisional
Probab=58.69 E-value=1.8e+02 Score=28.22 Aligned_cols=108 Identities=11% Similarity=0.081 Sum_probs=55.3
Q ss_pred CCchhhHHHHHHHHHHHHcCC-CCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEEC
Q 021570 111 CCSVKDRIGFSMIADAEQKGL-ITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTD 189 (311)
Q Consensus 111 tGS~KdRga~~~v~~A~~~G~-~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~ 189 (311)
.|.-..|-+...... ...|. +.+. ..|+..+++..|..++..+- +.-.-.|++++-.-..-...++.+|++++.++
T Consensus 91 ~G~~~Lr~aia~~~~-~~~g~~~~~~-~~I~vt~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~ 167 (413)
T PLN00175 91 FGVPELNSAIAERFK-KDTGLVVDPE-KEVTVTSGCTEAIAATILGL-INPGDEVILFAPFYDSYEATLSMAGAKIKTVT 167 (413)
T ss_pred CCCHHHHHHHHHHHH-HHhCCCCCCC-CCEEEeCCHHHHHHHHHHHh-CCCCCEEEEeCCCchhHHHHHHHcCCEEEEEE
Confidence 465556655444332 23343 3332 24676777778877766644 33233455555444445667788999999886
Q ss_pred CCC-ChHHHHHHHHHHHHhCCCceeeCCCCCCc
Q 021570 190 SAK-GMKGAVQKAEEILNSTPNAYMLQQFDNPA 221 (311)
Q Consensus 190 ~~~-~~~~a~~~a~~~~~~~~~~~~~~~~~n~~ 221 (311)
-+. ++.-..+...+....+...++++..+||.
T Consensus 168 ~~~~~~~~~~~~l~~~~~~~~k~i~i~~p~NPt 200 (413)
T PLN00175 168 LRPPDFAVPEDELKAAFTSKTRAILINTPHNPT 200 (413)
T ss_pred CCcccCCCCHHHHHHhcCcCceEEEecCCCCCC
Confidence 431 11111122222222233556666555654
No 259
>PRK06181 short chain dehydrogenase; Provisional
Probab=58.54 E-value=64 Score=28.64 Aligned_cols=67 Identities=19% Similarity=0.212 Sum_probs=42.0
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMS-LERRVLLKAFGAELVLTDSAKGMKGAVQKAEE 203 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~-~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~ 203 (311)
..+|++.+|..|.+++......|.+++++...... ......++..|.++..+..+..-.+.++.+.+
T Consensus 3 ~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~ 70 (263)
T PRK06181 3 VVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIE 70 (263)
T ss_pred EEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 56888899999999999999999987776543211 11233445567777665544322344444433
No 260
>PRK06949 short chain dehydrogenase; Provisional
Probab=58.44 E-value=57 Score=28.72 Aligned_cols=32 Identities=31% Similarity=0.365 Sum_probs=27.2
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEEC
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMP 167 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p 167 (311)
+..+|++.+|.-|.++|....+.|.+++++..
T Consensus 10 k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r 41 (258)
T PRK06949 10 KVALVTGASSGLGARFAQVLAQAGAKVVLASR 41 (258)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 46788889999999999999999998776654
No 261
>PRK08068 transaminase; Reviewed
Probab=58.40 E-value=1.5e+02 Score=28.21 Aligned_cols=78 Identities=8% Similarity=-0.098 Sum_probs=45.2
Q ss_pred CCchhhHHHHHHHHHHHHcCC-CCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEEC
Q 021570 111 CCSVKDRIGFSMIADAEQKGL-ITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTD 189 (311)
Q Consensus 111 tGS~KdRga~~~v~~A~~~G~-~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~ 189 (311)
.|.-..|.+....... ..|. +.++ ..|+..++|..+..++..+ ..+-.-.|++|.-.-..-...++.+|++++.++
T Consensus 70 ~g~~~lr~aia~~~~~-~~g~~~~~~-~~i~it~G~~~~l~~~~~~-~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~ 146 (389)
T PRK08068 70 RGYPFLKEAAADFYKR-EYGVTLDPE-TEVAILFGGKAGLVELPQC-LMNPGDTILVPDPGYPDYLSGVALARAQFETMP 146 (389)
T ss_pred CCCHHHHHHHHHHHHH-HhCCCCCCC-ccEEEcCCcHHHHHHHHHH-hCCCCCEEEEcCCCCcchHHHHHhcCCEEEEee
Confidence 5666677655544332 2343 3332 2467777777777665443 233334566665444444556778999998887
Q ss_pred CC
Q 021570 190 SA 191 (311)
Q Consensus 190 ~~ 191 (311)
-+
T Consensus 147 ~~ 148 (389)
T PRK08068 147 LI 148 (389)
T ss_pred cc
Confidence 53
No 262
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=58.39 E-value=93 Score=27.60 Aligned_cols=56 Identities=14% Similarity=0.177 Sum_probs=39.2
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCH--HHHHHHHhcCCEEEEECCC
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSL--ERRVLLKAFGAELVLTDSA 191 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~--~k~~~l~~~GA~V~~v~~~ 191 (311)
+..+|++.+|.-|.++|......|.++++......+. .....++..|.++..+..+
T Consensus 8 k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~D 65 (261)
T PRK08936 8 KVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGD 65 (261)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEec
Confidence 4678899999999999999999999887765533221 2233455667777655433
No 263
>PRK05370 argininosuccinate synthase; Validated
Probab=58.36 E-value=2e+02 Score=28.71 Aligned_cols=131 Identities=17% Similarity=0.158 Sum_probs=74.0
Q ss_pred CCceEEeeCcC-hHHHHHHHHHHHcCCeEEEEECC-CCC-----HHHHHHHHhcCC-EEEEECCCCChHHHHHHHHHHHH
Q 021570 135 GKSILVEPTSG-NTGIGLAFIAASKGYKLILTMPA-SMS-----LERRVLLKAFGA-ELVLTDSAKGMKGAVQKAEEILN 206 (311)
Q Consensus 135 g~~~vv~aSsG-N~g~AlA~~aa~~Gi~~~vv~p~-~~~-----~~k~~~l~~~GA-~V~~v~~~~~~~~a~~~a~~~~~ 206 (311)
|++.+.+.|+| .+...+-+.-.. |++++.|.-. ..+ ..-.+....+|| +++.+|-...|.+-. . ...+
T Consensus 11 ~~KVvLAYSGGLDTSv~l~wL~e~-~~eVia~~aDvGQ~~~ed~~~i~~kA~~~GA~~~~viDlr~eF~e~~--i-~aI~ 86 (447)
T PRK05370 11 GQRVGIAFSGGLDTSAALLWMRQK-GAVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDCRAQLVAEG--I-AAIQ 86 (447)
T ss_pred CCEEEEEecCCchHHHHHHHHHhc-CCeEEEEEEECCCCCccchHHHHHHHHHhCCCEEEEeccHHHHHHHH--H-HHHH
Confidence 44666666777 455555555555 9998888733 221 233445677899 688888653332221 1 3233
Q ss_pred hCCCceee----CCCCC---CcchHhhHHHHHHHHHHHcCCCCCEEEEc-cChhhHHHHHHHHHHhcCCCCEEEEEe
Q 021570 207 STPNAYML----QQFDN---PANPKIHYETTGPEIWEDTRGKVDIFIGG-IGTGGTISGAGRYLKEKNPNIKVIIFV 275 (311)
Q Consensus 207 ~~~~~~~~----~~~~n---~~~~~~G~~t~a~Ei~~Ql~~~pD~vv~p-vG~Gg~~~Gi~~~lk~~~p~~~iigVe 275 (311)
. +..|. +.|.. ..++. ......|++++.+ .|+|... +|-|--..-.-.+++.+.|+.+||+=-
T Consensus 87 a--nA~Y~~~~e~~Y~l~t~LaRpl--ia~~lv~~A~~~g--a~aIAHG~TGKGNDQvRFE~~~~aL~P~l~ViaPw 157 (447)
T PRK05370 87 C--GAFHISTGGVTYFNTTPLGRAV--TGTMLVAAMKEDG--VNIWGDGSTYKGNDIERFYRYGLLTNPELKIYKPW 157 (447)
T ss_pred c--CCccccccCccccCCCcchHHH--HHHHHHHHHHHhC--CcEEEEcCCCCCCchHHHHHHHHHhCCCCeEecch
Confidence 2 22221 11111 11111 1223345566553 6777665 467877888888889999998888753
No 264
>PRK08862 short chain dehydrogenase; Provisional
Probab=58.22 E-value=1.2e+02 Score=26.68 Aligned_cols=54 Identities=17% Similarity=0.105 Sum_probs=35.5
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhcCCEEEEEC
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMS-LERRVLLKAFGAELVLTD 189 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~-~~k~~~l~~~GA~V~~v~ 189 (311)
+..+|++.++.-|.++|...+..|.+++++-..... ....+.++..|.+++.+.
T Consensus 6 k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~ 60 (227)
T PRK08862 6 SIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQ 60 (227)
T ss_pred eEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEE
Confidence 366888888889999999999999987665332211 112334555676665543
No 265
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=58.03 E-value=80 Score=31.13 Aligned_cols=29 Identities=17% Similarity=0.078 Sum_probs=25.0
Q ss_pred eeCcChHHHHHHHHHHHcCCeEEEEECCC
Q 021570 141 EPTSGNTGIGLAFIAASKGYKLILTMPAS 169 (311)
Q Consensus 141 ~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~ 169 (311)
++.-|.+..+|+.+-+++|.++.|++|.-
T Consensus 16 ~GGl~~~v~~L~~aL~~~G~~v~v~~p~y 44 (473)
T TIGR02095 16 TGGLADVVGALPKALAALGHDVRVLLPAY 44 (473)
T ss_pred cCcHHHHHHHHHHHHHHcCCeEEEEecCC
Confidence 45567888999999999999999999974
No 266
>PRK06197 short chain dehydrogenase; Provisional
Probab=57.95 E-value=1.5e+02 Score=27.23 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=26.3
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEEC
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMP 167 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p 167 (311)
+..+|++.+|--|.++|..-+..|.+++++..
T Consensus 17 k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r 48 (306)
T PRK06197 17 RVAVVTGANTGLGYETAAALAAKGAHVVLAVR 48 (306)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 36788888899999999988888998777654
No 267
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=57.88 E-value=65 Score=29.63 Aligned_cols=54 Identities=19% Similarity=0.198 Sum_probs=39.3
Q ss_pred HcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEE
Q 021570 128 QKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAEL 185 (311)
Q Consensus 128 ~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V 185 (311)
+.+.+.+|...+| ..+|..|.+++..|+..|++++++.+. ..++..++.+|++-
T Consensus 161 ~~~~~~~~~~vlV-~g~g~vg~~~~~la~~~g~~v~~~~~~---~~~~~~~~~~g~~~ 214 (329)
T cd08298 161 KLAGLKPGQRLGL-YGFGASAHLALQIARYQGAEVFAFTRS---GEHQELARELGADW 214 (329)
T ss_pred HhhCCCCCCEEEE-ECCcHHHHHHHHHHHHCCCeEEEEcCC---hHHHHHHHHhCCcE
Confidence 5566677755555 457899999999999999987666444 35667777788754
No 268
>PRK08862 short chain dehydrogenase; Provisional
Probab=57.78 E-value=66 Score=28.40 Aligned_cols=11 Identities=36% Similarity=-0.013 Sum_probs=7.5
Q ss_pred CCCEEEEEeCC
Q 021570 267 PNIKVIIFVLF 277 (311)
Q Consensus 267 p~~~iigVe~~ 277 (311)
.+++|..|.|-
T Consensus 175 ~~Irvn~v~PG 185 (227)
T PRK08862 175 FNIRVGGVVPS 185 (227)
T ss_pred cCcEEEEEecC
Confidence 35777777774
No 269
>PRK08303 short chain dehydrogenase; Provisional
Probab=57.77 E-value=79 Score=29.41 Aligned_cols=56 Identities=21% Similarity=0.216 Sum_probs=37.5
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCC-----------CHHHHHHHHhcCCEEEEECCC
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASM-----------SLERRVLLKAFGAELVLTDSA 191 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~-----------~~~k~~~l~~~GA~V~~v~~~ 191 (311)
+..+|++.++--|.++|..-+..|.+++++-.... -......+...|.+++.+..|
T Consensus 9 k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D 75 (305)
T PRK08303 9 KVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVD 75 (305)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcC
Confidence 36788888888999999999999998777643211 112234556677776655443
No 270
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=57.75 E-value=1.5e+02 Score=27.01 Aligned_cols=45 Identities=13% Similarity=0.029 Sum_probs=31.8
Q ss_pred HHHHHHHHcCCCCCEEEEccChhhHHHHHHHHHHhcC----CCCEEEEEeCC
Q 021570 230 TGPEIWEDTRGKVDIFIGGIGTGGTISGAGRYLKEKN----PNIKVIIFVLF 277 (311)
Q Consensus 230 ~a~Ei~~Ql~~~pD~vv~pvG~Gg~~~Gi~~~lk~~~----p~~~iigVe~~ 277 (311)
...+++++.+ ++|+||+. +...+.|+.+++++.+ .++.|+|.+-.
T Consensus 192 ~~~~~l~~~~-~~~ai~~~--~d~~A~g~~~al~~~g~~vp~di~vig~D~~ 240 (305)
T cd06324 192 QAENLLKRYP-DVRLIWAA--NDQMAFGALRAAKEAGRKPGRDVLFGGVNWS 240 (305)
T ss_pred HHHHHHHHCC-CccEEEEC--CchHHHHHHHHHHHcCCCcCCCEEEEecCCC
Confidence 4456665543 58988863 5667779999999865 36888888753
No 271
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=57.71 E-value=30 Score=38.08 Aligned_cols=31 Identities=13% Similarity=0.176 Sum_probs=28.7
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEEC
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMP 167 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p 167 (311)
+.|++..+|-.|.++|++.++.|.+++||=.
T Consensus 384 KKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~ 414 (1028)
T PRK06567 384 YNILVTGLGPAGFSLSYYLLRSGHNVTAIDG 414 (1028)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCeEEEEcc
Confidence 5799999999999999999999999999954
No 272
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=57.65 E-value=42 Score=33.19 Aligned_cols=52 Identities=17% Similarity=0.117 Sum_probs=41.1
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCC-----CCHHHHHHHHhcCCEEEEE
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPAS-----MSLERRVLLKAFGAELVLT 188 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~-----~~~~k~~~l~~~GA~V~~v 188 (311)
+.|+...+||.|.-+|..+.++|.+++++...+ .....++.++..|.+++..
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~l~~~GV~~~~~ 329 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTARVEEIAHAEEEGVKFHFL 329 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEec
Confidence 578999999999999999999999999887542 2334446677888888754
No 273
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=57.60 E-value=56 Score=29.20 Aligned_cols=53 Identities=19% Similarity=0.034 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCC
Q 021570 117 RIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPAS 169 (311)
Q Consensus 117 Rga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~ 169 (311)
+|..+.+..+.++-.......+|+.-..||-|..+|......|.+.+.+...+
T Consensus 4 ~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~ 56 (217)
T cd05211 4 YGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPD 56 (217)
T ss_pred hHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC
Confidence 56777777665432223334789999999999999999999999888877543
No 274
>PRK07677 short chain dehydrogenase; Provisional
Probab=57.60 E-value=62 Score=28.58 Aligned_cols=65 Identities=17% Similarity=0.208 Sum_probs=39.3
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHH
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMS-LERRVLLKAFGAELVLTDSAKGMKGAVQKA 201 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~-~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a 201 (311)
..+|++.+|.-|.++|......|.+++++-..... ......++..+.+++.+..|-.-.+.++.+
T Consensus 3 ~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 68 (252)
T PRK07677 3 VVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKM 68 (252)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHH
Confidence 56888899999999999999999976665432211 112223444566666554432223344443
No 275
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=57.58 E-value=80 Score=28.78 Aligned_cols=55 Identities=29% Similarity=0.454 Sum_probs=40.9
Q ss_pred cCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEE
Q 021570 129 KGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELV 186 (311)
Q Consensus 129 ~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~ 186 (311)
.+.+.++.+.+|.+.+|..|.+++..++.+|.+++++.. ...+...++.+|++.+
T Consensus 157 ~~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~~~~~~ 211 (332)
T cd08259 157 RAGVKKGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTR---SPEKLKILKELGADYV 211 (332)
T ss_pred HhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeC---CHHHHHHHHHcCCcEE
Confidence 356667767777888899999999999999999776653 2345666677777543
No 276
>PLN02527 aspartate carbamoyltransferase
Probab=57.57 E-value=76 Score=29.96 Aligned_cols=61 Identities=21% Similarity=0.232 Sum_probs=41.8
Q ss_pred HcCCCCCCCceEEeeCc---ChHHHHHHHHHHHc-CCeEEEEECCC--CCHHHHHHHHhcCCEEEEECC
Q 021570 128 QKGLITPGKSILVEPTS---GNTGIGLAFIAASK-GYKLILTMPAS--MSLERRVLLKAFGAELVLTDS 190 (311)
Q Consensus 128 ~~G~~~~g~~~vv~aSs---GN~g~AlA~~aa~~-Gi~~~vv~p~~--~~~~k~~~l~~~GA~V~~v~~ 190 (311)
+.|.+. | .+|+-... +|.+.+++.+++++ |++++++.|+. .+......++..|.++..++.
T Consensus 145 ~~g~l~-g-~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d 211 (306)
T PLN02527 145 EIGRLD-G-IKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESSD 211 (306)
T ss_pred HhCCcC-C-CEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEcC
Confidence 345443 2 34444443 46899999998887 99999999986 455555566667888776653
No 277
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=57.30 E-value=82 Score=30.06 Aligned_cols=59 Identities=20% Similarity=0.303 Sum_probs=47.8
Q ss_pred HHcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHh-cCCEEEEE
Q 021570 127 EQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKA-FGAELVLT 188 (311)
Q Consensus 127 ~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~-~GA~V~~v 188 (311)
++-|..+.|++.+|.+.+|-.|.-+.-.|+..|.+++-+.- .++|.+.+.. +|-+...=
T Consensus 143 l~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaG---g~eK~~~l~~~lGfD~~id 202 (340)
T COG2130 143 LDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAG---GAEKCDFLTEELGFDAGID 202 (340)
T ss_pred HHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecC---CHHHHHHHHHhcCCceeee
Confidence 45577777888888999999999999999999999988865 4688888877 77766543
No 278
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=57.08 E-value=65 Score=28.21 Aligned_cols=66 Identities=15% Similarity=0.151 Sum_probs=42.4
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCC--CHHHHHHHHhcCCEEEEECCCCChHHHHHHH
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASM--SLERRVLLKAFGAELVLTDSAKGMKGAVQKA 201 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~--~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a 201 (311)
...+|++.+|--|.+++......|.++++...... .......++..|.++..+..+..-.+.+..+
T Consensus 7 ~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 74 (252)
T PRK06077 7 KVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCETL 74 (252)
T ss_pred cEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHH
Confidence 36788889999999999999999998776553221 1223445666777776555443223334333
No 279
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=57.01 E-value=1.3e+02 Score=27.70 Aligned_cols=54 Identities=26% Similarity=0.463 Sum_probs=39.4
Q ss_pred HcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEE
Q 021570 128 QKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAEL 185 (311)
Q Consensus 128 ~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V 185 (311)
+...+.+|+..++. .+|-.|.+++..|+.+|++++++.. +.++...++.+|++-
T Consensus 153 ~~~~l~~g~~vLI~-g~g~vG~~a~~lA~~~g~~v~~~~~---s~~~~~~~~~~g~~~ 206 (337)
T cd08261 153 RRAGVTAGDTVLVV-GAGPIGLGVIQVAKARGARVIVVDI---DDERLEFARELGADD 206 (337)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEECC---CHHHHHHHHHhCCCE
Confidence 44566777665665 5788899999999999999765533 366777778888653
No 280
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=56.95 E-value=1.8e+02 Score=27.99 Aligned_cols=95 Identities=21% Similarity=0.293 Sum_probs=42.8
Q ss_pred eEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChH--HHHHHHHHHHHhCCCcee-eCCC-CCCcchHhhHHHHHHHHHH
Q 021570 161 KLILTMPASMSLERRVLLKAFGAELVLTDSAKGMK--GAVQKAEEILNSTPNAYM-LQQF-DNPANPKIHYETTGPEIWE 236 (311)
Q Consensus 161 ~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~--~a~~~a~~~~~~~~~~~~-~~~~-~n~~~~~~G~~t~a~Ei~~ 236 (311)
+..|+.-.+.-..--..++.+|-++.++.+...+. +..+...+..++.+-.+. .+.. .||..- . -.-+.+.++
T Consensus 7 p~~i~~G~g~~~~l~~~~~~~~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~--~-v~~~~~~~~ 83 (382)
T cd08187 7 PTKIIFGKGTESELGKELKKYGKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLE--T-VREGIELCK 83 (382)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHH--H-HHHHHHHHH
Confidence 44455544443444455666677776664432122 223444444443311121 2221 133211 1 112334444
Q ss_pred HcCCCCCEEEEccChhhHHHHHHHHH
Q 021570 237 DTRGKVDIFIGGIGTGGTISGAGRYL 262 (311)
Q Consensus 237 Ql~~~pD~vv~pvG~Gg~~~Gi~~~l 262 (311)
+. ++|. |+++|||+.+ =++|++
T Consensus 84 ~~--~~D~-IIaiGGGS~i-D~aK~i 105 (382)
T cd08187 84 EE--KVDF-ILAVGGGSVI-DSAKAI 105 (382)
T ss_pred Hc--CCCE-EEEeCChHHH-HHHHHH
Confidence 43 4776 5788887765 344443
No 281
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=56.86 E-value=1.5e+02 Score=28.45 Aligned_cols=31 Identities=23% Similarity=0.245 Sum_probs=20.4
Q ss_pred CCCceEEeeCcChHHHHHHHHHHHcCCeEEEE
Q 021570 134 PGKSILVEPTSGNTGIGLAFIAASKGYKLILT 165 (311)
Q Consensus 134 ~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv 165 (311)
|| +.|+..++|-||.-.|=.++++|.++.++
T Consensus 91 Pg-d~vLv~~~G~wg~ra~D~~~r~ga~V~~v 121 (385)
T KOG2862|consen 91 PG-DNVLVVSTGTWGQRAADCARRYGAEVDVV 121 (385)
T ss_pred CC-CeEEEEEechHHHHHHHHHHhhCceeeEE
Confidence 44 45666667777776666666666666666
No 282
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=56.76 E-value=64 Score=28.58 Aligned_cols=66 Identities=18% Similarity=0.258 Sum_probs=41.5
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHH
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMS-LERRVLLKAFGAELVLTDSAKGMKGAVQKA 201 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~-~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a 201 (311)
+..+|++.+|--|.++|......|.+++++...... ......++..|.++..+..+..-.+.++.+
T Consensus 13 k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~ 79 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERL 79 (259)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHH
Confidence 367888999999999999998899987665432111 111233455677776665553223444443
No 283
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=56.74 E-value=72 Score=28.14 Aligned_cols=68 Identities=18% Similarity=0.112 Sum_probs=41.6
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMS-LERRVLLKAFGAELVLTDSAKGMKGAVQKAEE 203 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~-~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~ 203 (311)
+..+|++.+|.-|.++|......|.+++++...... ..-...++..|.++..+..+-.-.+.+..+.+
T Consensus 12 k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 80 (256)
T PRK06124 12 QVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFA 80 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHH
Confidence 467888899999999999988899987776543211 12223355567666555443222333444433
No 284
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=56.74 E-value=79 Score=28.84 Aligned_cols=96 Identities=13% Similarity=0.108 Sum_probs=45.8
Q ss_pred HHHHHHHHHc--CCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHH-HHHhCCCceeeCCCCCCcchHh
Q 021570 149 IGLAFIAASK--GYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEE-ILNSTPNAYMLQQFDNPANPKI 225 (311)
Q Consensus 149 ~AlA~~aa~~--Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~-~~~~~~~~~~~~~~~n~~~~~~ 225 (311)
..+.++++.+ |.+..-+-..+.-..-+......|-.|.++++.. +..+.+.+ +.++. +.-.+...+-+...+
T Consensus 70 ~gvv~~~~~~~~~~~~~Rv~G~dl~~~ll~~~~~~~~~v~llG~~~---~v~~~a~~~l~~~y-~l~i~g~~~Gyf~~~- 144 (243)
T PRK03692 70 ISVVRSIRKKYPQAQVSRVAGADLWEALMARAGKEGTPVFLVGGKP---EVLAQTEAKLRTQW-NVNIVGSQDGYFTPE- 144 (243)
T ss_pred HHHHHHHHHhcCCCCCCeeChHHHHHHHHHHHHhcCCeEEEECCCH---HHHHHHHHHHHHHh-CCEEEEEeCCCCCHH-
Confidence 4566666655 4331111111112233344456788999998873 44444444 33333 332221111112221
Q ss_pred hHHHHHHHHHHHcCC-CCCEEEEccChhh
Q 021570 226 HYETTGPEIWEDTRG-KVDIFIGGIGTGG 253 (311)
Q Consensus 226 G~~t~a~Ei~~Ql~~-~pD~vv~pvG~Gg 253 (311)
-. .+|++++.. .||.|+++.|.-=
T Consensus 145 e~----~~i~~~I~~s~~dil~VglG~Pk 169 (243)
T PRK03692 145 QR----QALFERIHASGAKIVTVAMGSPK 169 (243)
T ss_pred HH----HHHHHHHHhcCCCEEEEECCCcH
Confidence 11 234444432 4999999998753
No 285
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=56.66 E-value=58 Score=28.53 Aligned_cols=55 Identities=18% Similarity=0.284 Sum_probs=38.1
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCC--HHHHHHHHhcCCEEEEECCC
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMS--LERRVLLKAFGAELVLTDSA 191 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~--~~k~~~l~~~GA~V~~v~~~ 191 (311)
..+|++.+|.-|.++|..-.+.|.++++..-.+.. ......++..+.+++.+..+
T Consensus 4 ~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 60 (248)
T PRK06947 4 VVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVAGD 60 (248)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEec
Confidence 56888899999999999999999987765433211 12234556677777665544
No 286
>PRK06198 short chain dehydrogenase; Provisional
Probab=56.61 E-value=95 Score=27.37 Aligned_cols=66 Identities=18% Similarity=0.182 Sum_probs=41.5
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCH--HHHHHHHhcCCEEEEECCCCChHHHHHHH
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSL--ERRVLLKAFGAELVLTDSAKGMKGAVQKA 201 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~--~k~~~l~~~GA~V~~v~~~~~~~~a~~~a 201 (311)
+..+|++.+|..|..++......|.+.++++..+... .....++..|.++..+..+..-.+.+..+
T Consensus 7 k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~ 74 (260)
T PRK06198 7 KVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRV 74 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHH
Confidence 3578888899999999999999999844445443221 12335566788876554443223334443
No 287
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=56.59 E-value=92 Score=30.48 Aligned_cols=67 Identities=16% Similarity=0.151 Sum_probs=43.9
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHH
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEI 204 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~ 204 (311)
+..+|++.+|.-|.++|...+..|.+++++-...............+++++.+|-.. .+.++.+.+.
T Consensus 211 ~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~--~~~~~~~~~~ 277 (450)
T PRK08261 211 KVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRVGGTALALDITA--PDAPARIAEH 277 (450)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEeCCC--HHHHHHHHHH
Confidence 467888889999999999999999997776443222222333345677777777543 3444444443
No 288
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=56.56 E-value=1.1e+02 Score=26.64 Aligned_cols=67 Identities=18% Similarity=0.201 Sum_probs=42.7
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCC--HHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMS--LERRVLLKAFGAELVLTDSAKGMKGAVQKAEE 203 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~--~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~ 203 (311)
..+|++.+|.-|.+++......|.+++++...+.. ......++.+|.++..+..+-.-.+.++.+.+
T Consensus 3 ~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~ 71 (247)
T PRK09730 3 IALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQADISDENQVVAMFT 71 (247)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHH
Confidence 46888999999999999999999988775544321 12223455667776655544322344444444
No 289
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=56.22 E-value=1.3e+02 Score=27.53 Aligned_cols=58 Identities=31% Similarity=0.432 Sum_probs=40.4
Q ss_pred HcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEEC
Q 021570 128 QKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTD 189 (311)
Q Consensus 128 ~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~ 189 (311)
..+.+.++...++. .+|..|.+++..|+.+|.++++..+ ++.+.+.++.+|++-+...
T Consensus 159 ~~~~~~~~~~vli~-g~g~vG~~~~~la~~~G~~V~~~~~---s~~~~~~~~~~g~~~~~~~ 216 (338)
T cd08254 159 RAGEVKPGETVLVI-GLGGLGLNAVQIAKAMGAAVIAVDI---KEEKLELAKELGADEVLNS 216 (338)
T ss_pred hccCCCCCCEEEEE-CCcHHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHhCCCEEEcC
Confidence 34556677566664 5688999999999999998554433 4566777788888654443
No 290
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=56.20 E-value=1.4e+02 Score=27.79 Aligned_cols=55 Identities=18% Similarity=0.197 Sum_probs=38.2
Q ss_pred CCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEE
Q 021570 130 GLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVL 187 (311)
Q Consensus 130 G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~ 187 (311)
+.+.+|+. |+...+|..|.+++..|+.+|.+.++++. .+..|...++.+|++.+.
T Consensus 171 ~~~~~~~~-vlI~g~g~vg~~~~~~a~~~G~~~v~~~~--~~~~~~~~~~~~g~~~~~ 225 (350)
T cd08240 171 MPLVADEP-VVIIGAGGLGLMALALLKALGPANIIVVD--IDEAKLEAAKAAGADVVV 225 (350)
T ss_pred ccCCCCCE-EEEECCcHHHHHHHHHHHHcCCCeEEEEe--CCHHHHHHHHHhCCcEEe
Confidence 33334534 44446799999999999999996555553 346777888888986443
No 291
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=56.06 E-value=1.5e+02 Score=27.30 Aligned_cols=57 Identities=26% Similarity=0.425 Sum_probs=38.7
Q ss_pred HHcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEE
Q 021570 127 EQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELV 186 (311)
Q Consensus 127 ~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~ 186 (311)
.+...+.+|+..+|. .+|-.|.+++..|+.+|++.+++.. .+..+...++.+|++-+
T Consensus 158 l~~~~~~~g~~VlV~-g~g~vg~~~~~la~~~g~~~v~~~~--~s~~~~~~~~~~g~~~~ 214 (343)
T cd08235 158 QRKAGIKPGDTVLVI-GAGPIGLLHAMLAKASGARKVIVSD--LNEFRLEFAKKLGADYT 214 (343)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEEC--CCHHHHHHHHHhCCcEE
Confidence 344456777666666 4688999999999999999444432 24556666677887543
No 292
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=56.03 E-value=84 Score=28.17 Aligned_cols=77 Identities=17% Similarity=0.143 Sum_probs=49.8
Q ss_pred eEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHH-------------HHHHHhcCCEEEEECCCCChHHHHHHHHHH
Q 021570 138 ILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLER-------------RVLLKAFGAELVLTDSAKGMKGAVQKAEEI 204 (311)
Q Consensus 138 ~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k-------------~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~ 204 (311)
++....+||-|.++|..-+..|.+++|--.......+ ......-+++|++.--. |........++
T Consensus 3 ~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP--~~a~~~v~~~l 80 (211)
T COG2085 3 IIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVP--FEAIPDVLAEL 80 (211)
T ss_pred EEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEecc--HHHHHhHHHHH
Confidence 4677899999999999999999998887544321111 01123345777776655 66666666666
Q ss_pred HHhCCCceeeCC
Q 021570 205 LNSTPNAYMLQQ 216 (311)
Q Consensus 205 ~~~~~~~~~~~~ 216 (311)
....++...++.
T Consensus 81 ~~~~~~KIvID~ 92 (211)
T COG2085 81 RDALGGKIVIDA 92 (211)
T ss_pred HHHhCCeEEEec
Confidence 654445565554
No 293
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=55.87 E-value=44 Score=33.24 Aligned_cols=53 Identities=21% Similarity=0.160 Sum_probs=39.0
Q ss_pred eEEeeCc---ChHHHHHHHHHHHc-CCeEEEEECCCC--CHHHHHHHHhcCCEEEEECC
Q 021570 138 ILVEPTS---GNTGIGLAFIAASK-GYKLILTMPASM--SLERRVLLKAFGAELVLTDS 190 (311)
Q Consensus 138 ~vv~aSs---GN~g~AlA~~aa~~-Gi~~~vv~p~~~--~~~k~~~l~~~GA~V~~v~~ 190 (311)
+|+-... +|.+.|++..++.+ |++++++.|+.. +...+..++..|..|..++.
T Consensus 243 kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~d 301 (429)
T PRK11891 243 HIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTDD 301 (429)
T ss_pred EEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEcC
Confidence 4444444 69999999997765 999999999864 45555666677888877653
No 294
>PLN02827 Alcohol dehydrogenase-like
Probab=55.80 E-value=87 Score=29.98 Aligned_cols=57 Identities=21% Similarity=0.294 Sum_probs=41.2
Q ss_pred HcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEE
Q 021570 128 QKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVL 187 (311)
Q Consensus 128 ~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~ 187 (311)
+.+.+.+|++.+|. .+|-.|.+++..|+.+|.+.++.+.. ++.|++.++.+|++-++
T Consensus 187 ~~~~~~~g~~VlV~-G~G~vG~~~iqlak~~G~~~vi~~~~--~~~~~~~a~~lGa~~~i 243 (378)
T PLN02827 187 NVADVSKGSSVVIF-GLGTVGLSVAQGAKLRGASQIIGVDI--NPEKAEKAKTFGVTDFI 243 (378)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEECC--CHHHHHHHHHcCCcEEE
Confidence 44566777555555 56899999999999999865554432 45788888999997543
No 295
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=55.79 E-value=67 Score=31.43 Aligned_cols=130 Identities=18% Similarity=0.214 Sum_probs=74.4
Q ss_pred ceEEeeCcC-hHHHHHHHHHHHcCCeEEEEECC-CCCHHH----HHHHHhcCCE-EEEECCCCChHHHHHHHHHHHHhCC
Q 021570 137 SILVEPTSG-NTGIGLAFIAASKGYKLILTMPA-SMSLER----RVLLKAFGAE-LVLTDSAKGMKGAVQKAEEILNSTP 209 (311)
Q Consensus 137 ~~vv~aSsG-N~g~AlA~~aa~~Gi~~~vv~p~-~~~~~k----~~~l~~~GA~-V~~v~~~~~~~~a~~~a~~~~~~~~ 209 (311)
+.|...|+| .+..++-+.-...|..++-|+-. ..+... ......+||. .+.+|....|. .+.+....+.
T Consensus 6 kvvLAYSGGLDTSv~i~wL~e~~~~eVia~tadvGQ~eed~~~i~eKA~~~Ga~~~~viD~reeF~--~~yi~~~i~a-- 81 (403)
T COG0137 6 KVVLAYSGGLDTSVAIKWLKEKGGAEVIAVTADVGQPEEDLDAIREKALELGAEEAYVIDAREEFV--EDYIFPAIKA-- 81 (403)
T ss_pred EEEEEecCCccHHHHHHHHHHhcCceEEEEEEeCCCChHHhHHHHHHHHHhCCceEEEeecHHHHH--HHHHHHHHHh--
Confidence 455666777 89999999999999888888743 333222 2334568987 66666532121 1222222222
Q ss_pred CceeeCCCCCC---cchHhhHHHHHHHHHHHcCCCCCEEEEc-cChhhHHHHHHHHHHhcCCCCEEEEE
Q 021570 210 NAYMLQQFDNP---ANPKIHYETTGPEIWEDTRGKVDIFIGG-IGTGGTISGAGRYLKEKNPNIKVIIF 274 (311)
Q Consensus 210 ~~~~~~~~~n~---~~~~~G~~t~a~Ei~~Ql~~~pD~vv~p-vG~Gg~~~Gi~~~lk~~~p~~~iigV 274 (311)
+..|-..|-.. .++. ....-.|++++.+ .++|--. +|=|--..=.-.+++.++|+.+||+=
T Consensus 82 na~Yeg~YpL~TalaRPL--Iak~lVe~A~k~g--a~avaHGcTGKGNDQvRFe~~~~al~p~lkiiAP 146 (403)
T COG0137 82 NALYEGVYPLGTALARPL--IAKKLVEAAKKEG--ADAVAHGCTGKGNDQVRFELAILALNPDLKIIAP 146 (403)
T ss_pred hceeeccccccchhhHHH--HHHHHHHHHHHcC--CCEEEecCCCCCCceeeeeeehhhhCCCcEEEee
Confidence 34444443221 1222 1233468888875 4655543 45555554455566677899998873
No 296
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=55.72 E-value=71 Score=31.71 Aligned_cols=79 Identities=18% Similarity=0.171 Sum_probs=49.6
Q ss_pred eEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHH----HHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCcee
Q 021570 138 ILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVL----LKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYM 213 (311)
Q Consensus 138 ~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~----l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~ 213 (311)
..+..++|-.+..++..+- ++-.-.|++|...-...... +..+|+++.+++...+. +.++.+. .++...+|
T Consensus 78 ~av~~~SG~aAi~~al~al-l~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~-~~l~~~I---~~~Tk~I~ 152 (432)
T PRK06702 78 GAVATASGQAAIMLAVLNI-CSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTA-DEIVALA---NDKTKLVY 152 (432)
T ss_pred cEEEECCHHHHHHHHHHHh-cCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECCCCCH-HHHHHhC---CcCCeEEE
Confidence 4677889999988888754 33334666776544333332 67899999999864211 3343332 33345677
Q ss_pred eCCCCCCc
Q 021570 214 LQQFDNPA 221 (311)
Q Consensus 214 ~~~~~n~~ 221 (311)
+....||.
T Consensus 153 ~e~pgnP~ 160 (432)
T PRK06702 153 AESLGNPA 160 (432)
T ss_pred EEcCCCcc
Confidence 77777877
No 297
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=55.40 E-value=71 Score=30.45 Aligned_cols=86 Identities=15% Similarity=0.125 Sum_probs=49.1
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCC---ChH-HHHHHHHHHH-HhCCCc
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAK---GMK-GAVQKAEEIL-NSTPNA 211 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~---~~~-~a~~~a~~~~-~~~~~~ 211 (311)
..|+.++++..+..++..+....-+-.|+++.-.-..-...++.+|++++.++.+. +.+ +.++.+.+.. ......
T Consensus 92 ~~I~it~Ga~~al~~~~~~~~~~g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~ 171 (374)
T PRK02610 92 ANISVGNGSDELIRSLLIATCLGGEGSILVAEPTFSMYGILAQTLGIPVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRV 171 (374)
T ss_pred HHEEEcCChHHHHHHHHHHHcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEecCCcccCCCCHHHHHHHHHhhcCCCceE
Confidence 34777777788887666554433222466666555566677789999999987432 111 3333332211 023356
Q ss_pred eeeCCCCCCcc
Q 021570 212 YMLQQFDNPAN 222 (311)
Q Consensus 212 ~~~~~~~n~~~ 222 (311)
+|+...+||..
T Consensus 172 i~l~~P~NPTG 182 (374)
T PRK02610 172 VFVVHPNSPTG 182 (374)
T ss_pred EEEeCCCCCCC
Confidence 77765566653
No 298
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=55.35 E-value=1.3e+02 Score=27.17 Aligned_cols=128 Identities=13% Similarity=0.082 Sum_probs=75.0
Q ss_pred HHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhc---CCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCCCCCCcchH
Q 021570 148 GIGLAFIAASKGYKLILTMPASMSLERRVLLKAF---GAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPK 224 (311)
Q Consensus 148 g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~---GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~ 224 (311)
|.++|.+.+.+|+++.++-++..+...+..+..+ |.+|....++.. .+.+ ..++.+..-....+..|.+-....
T Consensus 86 G~~Ta~~l~~~G~~~~~~p~~~~~~~l~~~l~~~~~~~~~vl~~~~~~~-r~~l--~~~L~~~G~~v~~~~~Y~~~~~~~ 162 (248)
T COG1587 86 GEKTAEALRKLGIKVDFIPEDGDSEGLLEELPELLKGGKRVLILRGNGG-REVL--EEKLEERGAEVREVEVYRTEPPPL 162 (248)
T ss_pred cHHHHHHHHHhCCCCCcCCCccchHHHHHHhhhhccCCCeEEEEcCCCc-hHHH--HHHHHhCCCEEEEEeeeeecCCCc
Confidence 4678899999999998876656667777777777 678877766532 1112 222322221234455554433221
Q ss_pred hhHHHHHHHHHHHcCCCCCEEEEccChhhHHHHHHHHHHhcCC----CCEEEEEeCCCCchhhh
Q 021570 225 IHYETTGPEIWEDTRGKVDIFIGGIGTGGTISGAGRYLKEKNP----NIKVIIFVLFISKPYLA 284 (311)
Q Consensus 225 ~G~~t~a~Ei~~Ql~~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p----~~~iigVe~~~s~~~~~ 284 (311)
...+. .+++ +. ...|+|+... +.++-.+...+....+ +.+++.+-|..+..+.+
T Consensus 163 -~~~~~-~~~~-~~-~~~d~v~ftS--~~~v~~~~~~~~~~~~~~~~~~~v~~IG~~Ta~~l~~ 220 (248)
T COG1587 163 -DEATL-IELL-KL-GEVDAVVFTS--SSAVRALLALAPESGIEFLERKRVASIGPRTAETLKE 220 (248)
T ss_pred -cHHHH-HHHH-Hh-CCCCEEEEeC--HHHHHHHHHHccccchhHhhCceEEEecHHHHHHHHH
Confidence 11111 1222 22 3689999884 5566677777766553 46788887766655544
No 299
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=55.07 E-value=1.1e+02 Score=28.82 Aligned_cols=55 Identities=20% Similarity=0.286 Sum_probs=40.3
Q ss_pred HcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEE
Q 021570 128 QKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAEL 185 (311)
Q Consensus 128 ~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V 185 (311)
+...+.+|+..+|. ..|..|.+++..|+.+|.+.++.+.. +..|...++.+|++-
T Consensus 177 ~~~~~~~g~~vlI~-g~g~vG~~a~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~ 231 (365)
T cd05279 177 NTAKVTPGSTCAVF-GLGGVGLSVIMGCKAAGASRIIAVDI--NKDKFEKAKQLGATE 231 (365)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHhCCCe
Confidence 44566777665665 67999999999999999875555432 566777778899853
No 300
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=54.99 E-value=22 Score=35.76 Aligned_cols=42 Identities=29% Similarity=0.510 Sum_probs=32.8
Q ss_pred CcChHHHHHHHHHHHcCCeEEEEE-CCCCCHHHHHHHHhcCCEEEEECCC
Q 021570 143 TSGNTGIGLAFIAASKGYKLILTM-PASMSLERRVLLKAFGAELVLTDSA 191 (311)
Q Consensus 143 SsGN~g~AlA~~aa~~Gi~~~vv~-p~~~~~~k~~~l~~~GA~V~~v~~~ 191 (311)
|||-+|.++|.++..+|-+++++. |.+.+ .-+|.+++.+...
T Consensus 280 SSGkmG~alA~aa~~~GA~VtlI~Gp~~~~-------~p~~v~~i~V~ta 322 (475)
T PRK13982 280 SSGKQGFAIAAAAAAAGAEVTLISGPVDLA-------DPQGVKVIHVESA 322 (475)
T ss_pred CchHHHHHHHHHHHHCCCcEEEEeCCcCCC-------CCCCceEEEecCH
Confidence 899999999999999999999998 33321 2357777777654
No 301
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=54.82 E-value=74 Score=28.15 Aligned_cols=66 Identities=9% Similarity=0.111 Sum_probs=41.6
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCH-HHHHHHHhcCCEEEEECCCCChHHHHHHH
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSL-ERRVLLKAFGAELVLTDSAKGMKGAVQKA 201 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~-~k~~~l~~~GA~V~~v~~~~~~~~a~~~a 201 (311)
+..+|++.+|.-|.+++......|.+++++....... .-...++..|.++..+..|-.-.+.+..+
T Consensus 12 k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~ 78 (255)
T PRK06113 12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSAL 78 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHH
Confidence 4678889999999999999999999877765432111 11234455677766554443223444443
No 302
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=54.80 E-value=46 Score=32.79 Aligned_cols=53 Identities=25% Similarity=0.289 Sum_probs=37.7
Q ss_pred CCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEE
Q 021570 130 GLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELV 186 (311)
Q Consensus 130 G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~ 186 (311)
+..-.| ++|+....|+-|..+|..++.+|.+++++=. .+.+.......|+++.
T Consensus 190 ~~~l~G-k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~---dp~r~~~A~~~G~~v~ 242 (406)
T TIGR00936 190 NLLIAG-KTVVVAGYGWCGKGIAMRARGMGARVIVTEV---DPIRALEAAMDGFRVM 242 (406)
T ss_pred CCCCCc-CEEEEECCCHHHHHHHHHHhhCcCEEEEEeC---ChhhHHHHHhcCCEeC
Confidence 433444 6799999999999999999999999666422 2334455556677553
No 303
>PRK08017 oxidoreductase; Provisional
Probab=54.74 E-value=1.1e+02 Score=26.91 Aligned_cols=52 Identities=19% Similarity=0.335 Sum_probs=38.8
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCC
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSA 191 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~ 191 (311)
+.+|++.+|.-|.++|......|.+++++... ..+++.++..|++.+.++-.
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~---~~~~~~~~~~~~~~~~~D~~ 55 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACRK---PDDVARMNSLGFTGILLDLD 55 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHhHHHHhCCCeEEEeecC
Confidence 46888889999999999999999987665432 34555566678877776644
No 304
>PRK08265 short chain dehydrogenase; Provisional
Probab=54.69 E-value=1e+02 Score=27.40 Aligned_cols=63 Identities=13% Similarity=0.163 Sum_probs=39.3
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHH-HHHhcCCEEEEECCCCChHHHHHHH
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRV-LLKAFGAELVLTDSAKGMKGAVQKA 201 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~-~l~~~GA~V~~v~~~~~~~~a~~~a 201 (311)
+..+|++.+|--|.++|......|.+++++-. + ..+.. ..+..|.++..+..|-.-.+.++.+
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r-~--~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 70 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGARVAIVDI-D--ADNGAAVAASLGERARFIATDITDDAAIERA 70 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeC-C--HHHHHHHHHHhCCeeEEEEecCCCHHHHHHH
Confidence 36788889999999999999999998766633 2 22222 2334466665554443223344443
No 305
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=54.66 E-value=89 Score=34.57 Aligned_cols=32 Identities=16% Similarity=0.085 Sum_probs=28.8
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECC
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPA 168 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~ 168 (311)
..|+.-.+|-.|.+.|.+.++.|++++||=..
T Consensus 431 ~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~ 462 (1006)
T PRK12775 431 GKVAICGSGPAGLAAAADLVKYGVDVTVYEAL 462 (1006)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Confidence 56999999999999999999999999999543
No 306
>PRK07791 short chain dehydrogenase; Provisional
Probab=54.60 E-value=95 Score=28.33 Aligned_cols=56 Identities=18% Similarity=0.219 Sum_probs=37.9
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCC----------CCHHHHHHHHhcCCEEEEECCC
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPAS----------MSLERRVLLKAFGAELVLTDSA 191 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~----------~~~~k~~~l~~~GA~V~~v~~~ 191 (311)
+..+|++.++--|.++|...+..|.+++++.... ........++..|.++..+..|
T Consensus 7 k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D 72 (286)
T PRK07791 7 RVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDD 72 (286)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCC
Confidence 4678888999999999999999999877764221 1112234455667777665444
No 307
>PRK07814 short chain dehydrogenase; Provisional
Probab=54.57 E-value=71 Score=28.50 Aligned_cols=68 Identities=13% Similarity=0.126 Sum_probs=40.8
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMS-LERRVLLKAFGAELVLTDSAKGMKGAVQKAEE 203 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~-~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~ 203 (311)
+..+|++.+|--|.+++......|.+++++...... ......++..|.++..+..+..-.+.+..+.+
T Consensus 11 ~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 79 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAG 79 (263)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 467899999999999999999999987766543111 11122344446666554433222344444433
No 308
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=54.56 E-value=2e+02 Score=27.81 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=15.2
Q ss_pred HHHHHcCCCCCEEEEccChhhHHHHHHHHH
Q 021570 233 EIWEDTRGKVDIFIGGIGTGGTISGAGRYL 262 (311)
Q Consensus 233 Ei~~Ql~~~pD~vv~pvG~Gg~~~Gi~~~l 262 (311)
+++++ .++|. |+++|||+.+ =+++++
T Consensus 73 ~~~~~--~~~D~-IIaiGGGS~i-D~aK~i 98 (386)
T cd08191 73 SAAAR--AGPDV-IIGLGGGSCI-DLAKIA 98 (386)
T ss_pred HHHHh--cCCCE-EEEeCCchHH-HHHHHH
Confidence 44444 24776 6788888765 334443
No 309
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=54.39 E-value=1.4e+02 Score=28.12 Aligned_cols=58 Identities=28% Similarity=0.312 Sum_probs=41.3
Q ss_pred HcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEE
Q 021570 128 QKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLT 188 (311)
Q Consensus 128 ~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v 188 (311)
+.+.+.+|+..+|. .+|..|.+++..|+.+|.+.++.+.. .+.|...++.+|++.++.
T Consensus 180 ~~~~~~~g~~vlI~-g~g~vG~~~~~la~~~G~~~v~~~~~--~~~k~~~~~~~g~~~~i~ 237 (365)
T cd08278 180 NVLKPRPGSSIAVF-GAGAVGLAAVMAAKIAGCTTIIAVDI--VDSRLELAKELGATHVIN 237 (365)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCcEEec
Confidence 34556667555555 57999999999999999975544433 467778888899865543
No 310
>PRK12828 short chain dehydrogenase; Provisional
Probab=54.37 E-value=1.3e+02 Score=25.82 Aligned_cols=56 Identities=16% Similarity=0.058 Sum_probs=39.4
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhcCCEEEEECCC
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMS-LERRVLLKAFGAELVLTDSA 191 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~-~~k~~~l~~~GA~V~~v~~~ 191 (311)
++.+|++++|--|.+++......|.+++++.....+ ......+...+.+++..+-.
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~ 64 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDLV 64 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeecC
Confidence 467889999999999999988889997666543221 12234455667777776644
No 311
>PRK07985 oxidoreductase; Provisional
Probab=54.31 E-value=84 Score=28.86 Aligned_cols=66 Identities=14% Similarity=0.144 Sum_probs=41.2
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECC-CCC-H-HHHHHHHhcCCEEEEECCCCChHHHHHHHH
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPA-SMS-L-ERRVLLKAFGAELVLTDSAKGMKGAVQKAE 202 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~-~~~-~-~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~ 202 (311)
..+|++.+|.-|.++|......|.+++++-.. +.. . .....++..|.+++.+..|-.-.+.+..+.
T Consensus 51 ~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 119 (294)
T PRK07985 51 KALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLV 119 (294)
T ss_pred EEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHH
Confidence 67899999999999999999999998765322 111 1 112234456777765544432234444443
No 312
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=54.23 E-value=1.1e+02 Score=26.61 Aligned_cols=55 Identities=24% Similarity=0.295 Sum_probs=35.8
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHH-HHHHHhcCCEEEEECCC
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLER-RVLLKAFGAELVLTDSA 191 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k-~~~l~~~GA~V~~v~~~ 191 (311)
...+|++.+|..|.+++......|.+++++......... ...+.. |.++..+..+
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D 61 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-GGRAIAVAAD 61 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-CCeEEEEECC
Confidence 367899999999999999999999996666543211111 122232 5566555444
No 313
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=53.66 E-value=1.3e+02 Score=27.64 Aligned_cols=53 Identities=26% Similarity=0.274 Sum_probs=37.2
Q ss_pred CCCCCCceEEeeCcChHHHHHHHHHHHcC-CeEEEEECCCCCHHHHHHHHhcCCEEEE
Q 021570 131 LITPGKSILVEPTSGNTGIGLAFIAASKG-YKLILTMPASMSLERRVLLKAFGAELVL 187 (311)
Q Consensus 131 ~~~~g~~~vv~aSsGN~g~AlA~~aa~~G-i~~~vv~p~~~~~~k~~~l~~~GA~V~~ 187 (311)
.+.+|+..+|.+ +|..|.+++..|+.+| .+++++.. ++.+...++.+|++-+.
T Consensus 164 ~~~~~~~vlI~g-~~~vg~~~~~~a~~~g~~~v~~~~~---~~~~~~~~~~~g~~~~~ 217 (340)
T cd05284 164 YLDPGSTVVVIG-VGGLGHIAVQILRALTPATVIAVDR---SEEALKLAERLGADHVL 217 (340)
T ss_pred cCCCCCEEEEEc-CcHHHHHHHHHHHHhCCCcEEEEeC---CHHHHHHHHHhCCcEEE
Confidence 355565566666 6669999999999999 77665533 34667777889975433
No 314
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=53.52 E-value=1.8e+02 Score=29.66 Aligned_cols=82 Identities=15% Similarity=0.046 Sum_probs=45.3
Q ss_pred CCCCchhhHHHHHHHHHHHHcC-CCCCC-CceEEeeCcChHHHHHHHHHH----Hc--CCeEEEEECCCCCHHHHHHHHh
Q 021570 109 EPCCSVKDRIGFSMIADAEQKG-LITPG-KSILVEPTSGNTGIGLAFIAA----SK--GYKLILTMPASMSLERRVLLKA 180 (311)
Q Consensus 109 nPtGS~KdRga~~~v~~A~~~G-~~~~g-~~~vv~aSsGN~g~AlA~~aa----~~--Gi~~~vv~p~~~~~~k~~~l~~ 180 (311)
.|.|....|-+...-....+.+ ...+. ...|+...+|..|..++..+- .+ |=++.+..|.-..-...-.+..
T Consensus 126 ~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~l~~ 205 (521)
T TIGR03801 126 VPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPELPR 205 (521)
T ss_pred CCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHHHhc
Confidence 4678888777555433333333 22222 116888888999888877651 22 3333333343322223334556
Q ss_pred cCCEEEEECC
Q 021570 181 FGAELVLTDS 190 (311)
Q Consensus 181 ~GA~V~~v~~ 190 (311)
+|++++.++.
T Consensus 206 ~g~~vv~i~~ 215 (521)
T TIGR03801 206 YDFEVVRIKA 215 (521)
T ss_pred CCcEEEEeec
Confidence 7899887764
No 315
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=53.52 E-value=79 Score=29.39 Aligned_cols=52 Identities=29% Similarity=0.444 Sum_probs=37.8
Q ss_pred CCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEE
Q 021570 133 TPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVL 187 (311)
Q Consensus 133 ~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~ 187 (311)
.+|...+|. ..|..|.+++..|+.+|.+.+++. ..+..|....+.+|++-+.
T Consensus 162 ~~g~~vlV~-g~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~~~~ 213 (341)
T cd05281 162 VSGKSVLIT-GCGPIGLMAIAVAKAAGASLVIAS--DPNPYRLELAKKMGADVVI 213 (341)
T ss_pred CCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCcceee
Confidence 456566665 468999999999999998644555 3456778888889985443
No 316
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=53.26 E-value=1.1e+02 Score=31.34 Aligned_cols=54 Identities=17% Similarity=-0.012 Sum_probs=41.3
Q ss_pred ceEEeeCc---ChHHHHHHHHHHHcC-CeEEEEECCCC--CHHHHHHHHhcCCEEEEECC
Q 021570 137 SILVEPTS---GNTGIGLAFIAASKG-YKLILTMPASM--SLERRVLLKAFGAELVLTDS 190 (311)
Q Consensus 137 ~~vv~aSs---GN~g~AlA~~aa~~G-i~~~vv~p~~~--~~~k~~~l~~~GA~V~~v~~ 190 (311)
.+|+-... +|.+.|++..++.+| ++++++.|+.. +...+..++..|+.+..++.
T Consensus 175 lkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~d 234 (525)
T PRK13376 175 IHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFSS 234 (525)
T ss_pred CEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEcC
Confidence 34554444 799999999999998 99999999864 55556677778988876653
No 317
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=53.21 E-value=55 Score=28.76 Aligned_cols=133 Identities=15% Similarity=0.113 Sum_probs=68.9
Q ss_pred CCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCC---CCHHHHHHHHhcCCE-EEEECCCCChHHHHHHHHHHHHhC
Q 021570 133 TPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPAS---MSLERRVLLKAFGAE-LVLTDSAKGMKGAVQKAEEILNST 208 (311)
Q Consensus 133 ~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~---~~~~k~~~l~~~GA~-V~~v~~~~~~~~a~~~a~~~~~~~ 208 (311)
++| +.+..-..|.-++++-++ +.+=.+.|+.=+. .-..-.+..+.+|.+ +..+.++. .+++. .+. .
T Consensus 33 ~~g-~~l~DIGaGtGsi~iE~a--~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~A--p~~L~---~~~--~ 102 (187)
T COG2242 33 RPG-DRLWDIGAGTGSITIEWA--LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDA--PEALP---DLP--S 102 (187)
T ss_pred CCC-CEEEEeCCCccHHHHHHH--HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccc--hHhhc---CCC--C
Confidence 344 568777777777777776 4444444444222 112223345566653 55555542 12211 111 3
Q ss_pred CCceeeCCCCCCcchHhhHHHHHHHHHHH-cCCCCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCCchhhhc
Q 021570 209 PNAYMLQQFDNPANPKIHYETTGPEIWED-TRGKVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFISKPYLAC 285 (311)
Q Consensus 209 ~~~~~~~~~~n~~~~~~G~~t~a~Ei~~Q-l~~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s~~~~~~ 285 (311)
++..|+....+... + +|.+.+ +. .-..||+-+-+=-+++-+...++++.-. .|+-++-..+-++..+
T Consensus 103 ~daiFIGGg~~i~~-------i-le~~~~~l~-~ggrlV~naitlE~~~~a~~~~~~~g~~-ei~~v~is~~~~lg~~ 170 (187)
T COG2242 103 PDAIFIGGGGNIEE-------I-LEAAWERLK-PGGRLVANAITLETLAKALEALEQLGGR-EIVQVQISRGKPLGGG 170 (187)
T ss_pred CCEEEECCCCCHHH-------H-HHHHHHHcC-cCCeEEEEeecHHHHHHHHHHHHHcCCc-eEEEEEeecceeccCe
Confidence 46677766422111 1 233222 32 2356777776777777777777776544 6776766665555444
No 318
>PRK06101 short chain dehydrogenase; Provisional
Probab=53.17 E-value=97 Score=27.19 Aligned_cols=48 Identities=19% Similarity=0.210 Sum_probs=33.6
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEE
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVL 187 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~ 187 (311)
..+|++.+|.-|.++|..-...|.+++++... ..+.+.+...+.++..
T Consensus 3 ~vlItGas~giG~~la~~L~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~ 50 (240)
T PRK06101 3 AVLITGATSGIGKQLALDYAKQGWQVIACGRN---QSVLDELHTQSANIFT 50 (240)
T ss_pred EEEEEcCCcHHHHHHHHHHHhCCCEEEEEECC---HHHHHHHHHhcCCCeE
Confidence 56889999999999999998999997766432 3455555444433433
No 319
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=53.08 E-value=1.2e+02 Score=29.26 Aligned_cols=59 Identities=20% Similarity=0.238 Sum_probs=40.0
Q ss_pred cCCCCCCCceEEeeCcChHHHHHHHHHHHcCC--eEEEEECCCCCHHHHHHHHhc--------CCEEEEEC
Q 021570 129 KGLITPGKSILVEPTSGNTGIGLAFIAASKGY--KLILTMPASMSLERRVLLKAF--------GAELVLTD 189 (311)
Q Consensus 129 ~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi--~~~vv~p~~~~~~k~~~l~~~--------GA~V~~v~ 189 (311)
...+++|++.+|...+|-.|..+...|+.+|. ..++++ +.++.|++.++.+ ||+...++
T Consensus 170 ~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~--~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~ 238 (410)
T cd08238 170 RMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVT--DVNDERLARAQRLFPPEAASRGIELLYVN 238 (410)
T ss_pred hcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEE--cCCHHHHHHHHHhccccccccCceEEEEC
Confidence 35567776666666689999999999999876 223333 3356778887776 77654444
No 320
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=53.03 E-value=1.5e+02 Score=27.48 Aligned_cols=52 Identities=23% Similarity=0.396 Sum_probs=38.3
Q ss_pred cCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCE
Q 021570 129 KGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAE 184 (311)
Q Consensus 129 ~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~ 184 (311)
.+.+.++...+|.+ .|..|.++...|+.+|++++++.. +..+.+.++.+|++
T Consensus 160 ~~~~~~~~~vlV~g-~g~vg~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~g~~ 211 (345)
T cd08260 160 QARVKPGEWVAVHG-CGGVGLSAVMIASALGARVIAVDI---DDDKLELARELGAV 211 (345)
T ss_pred ccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEeC---CHHHHHHHHHhCCC
Confidence 44456665666666 799999999999999998766533 35566777778874
No 321
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=53.01 E-value=2.2e+02 Score=27.54 Aligned_cols=68 Identities=21% Similarity=0.237 Sum_probs=42.4
Q ss_pred CCeEEEeeCCC---CCCCchhhHHHHHHHH--HHH-HcCCCCCCCceEEeeCcC--hHHHHHHHHHHHcCCeEEEEECCC
Q 021570 98 VANIAAKLEIM---EPCCSVKDRIGFSMIA--DAE-QKGLITPGKSILVEPTSG--NTGIGLAFIAASKGYKLILTMPAS 169 (311)
Q Consensus 98 g~~l~vK~E~~---nPtGS~KdRga~~~v~--~A~-~~G~~~~g~~~vv~aSsG--N~g~AlA~~aa~~Gi~~~vv~p~~ 169 (311)
|++ ++|++.. ++.-+++.|.....-. ++. +.|. ...++...++ +-.+..|..++..|.+++++.|..
T Consensus 159 GvD-~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~----~~~y~~nit~~~~e~i~~a~~a~~~Gad~vmv~~~~ 233 (367)
T cd08205 159 GID-LIKDDELLADQPYAPFEERVRACMEAVRRANEETGR----KTLYAPNITGDPDELRRRADRAVEAGANALLINPNL 233 (367)
T ss_pred CCC-eeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCC----cceEEEEcCCCHHHHHHHHHHHHHcCCCEEEEeccc
Confidence 344 4566544 4678999888665443 333 3353 1223333333 566677888999999999998874
Q ss_pred C
Q 021570 170 M 170 (311)
Q Consensus 170 ~ 170 (311)
.
T Consensus 234 ~ 234 (367)
T cd08205 234 V 234 (367)
T ss_pred c
Confidence 3
No 322
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=52.94 E-value=1.4e+02 Score=28.34 Aligned_cols=56 Identities=20% Similarity=0.285 Sum_probs=40.0
Q ss_pred HHcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEE
Q 021570 127 EQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAEL 185 (311)
Q Consensus 127 ~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V 185 (311)
.+.+.+++|+..+|. .+|..|.+++..|+.+|.+-++++. ....+++.++.+|++-
T Consensus 183 ~~~~~~~~g~~VlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~--~~~~~~~~a~~lGa~~ 238 (373)
T cd08299 183 VNTAKVTPGSTCAVF-GLGGVGLSAIMGCKAAGASRIIAVD--INKDKFAKAKELGATE 238 (373)
T ss_pred HhccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHcCCce
Confidence 345667777555555 6799999999999999994344443 2457788888899853
No 323
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=52.93 E-value=1.6e+02 Score=26.36 Aligned_cols=57 Identities=19% Similarity=0.422 Sum_probs=41.8
Q ss_pred HcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEE
Q 021570 128 QKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLT 188 (311)
Q Consensus 128 ~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v 188 (311)
+.+.+.+|...++.+.+|..|.+++..|+.+|.++++..+ + .+...++.+|++-+.-
T Consensus 138 ~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~---~-~~~~~~~~~g~~~~~~ 194 (326)
T cd08272 138 DRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGARVYATAS---S-EKAAFARSLGADPIIY 194 (326)
T ss_pred HhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEec---h-HHHHHHHHcCCCEEEe
Confidence 4566677766666666899999999999999998766543 2 5666677788865443
No 324
>PRK06138 short chain dehydrogenase; Provisional
Probab=52.91 E-value=1e+02 Score=26.87 Aligned_cols=66 Identities=14% Similarity=0.152 Sum_probs=39.9
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHHH
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMS-LERRVLLKAFGAELVLTDSAKGMKGAVQKAE 202 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~-~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~ 202 (311)
++.+|++.+|-.|.++|..-...|.+++++.-.... ......++ .|.++..+..+-.-.+.++.+.
T Consensus 6 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~ 72 (252)
T PRK06138 6 RVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AGGRAFARQGDVGSAEAVEALV 72 (252)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-cCCeEEEEEcCCCCHHHHHHHH
Confidence 367899999999999999988889886666532211 11222333 5776665554432233444443
No 325
>PRK08264 short chain dehydrogenase; Validated
Probab=52.86 E-value=64 Score=28.08 Aligned_cols=32 Identities=19% Similarity=0.212 Sum_probs=26.8
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCC-eEEEEEC
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGY-KLILTMP 167 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi-~~~vv~p 167 (311)
...+|++.+|.-|.++|......|. +++++..
T Consensus 7 ~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r 39 (238)
T PRK08264 7 KVVLVTGANRGIGRAFVEQLLARGAAKVYAAAR 39 (238)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCcccEEEEec
Confidence 3678889999999999999999998 7666553
No 326
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=52.84 E-value=1.8e+02 Score=26.40 Aligned_cols=55 Identities=31% Similarity=0.422 Sum_probs=38.5
Q ss_pred cCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEE
Q 021570 129 KGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVL 187 (311)
Q Consensus 129 ~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~ 187 (311)
.+.+.+|...++ ..+|..|.+++..|+..|.++++..+ +..+++.++.+|++.++
T Consensus 155 ~~~~~~g~~vli-~g~g~~g~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~~~ 209 (336)
T cd08276 155 LGPLKPGDTVLV-QGTGGVSLFALQFAKAAGARVIATSS---SDEKLERAKALGADHVI 209 (336)
T ss_pred hcCCCCCCEEEE-ECCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEE
Confidence 355666644444 46788999999999999999655543 34667777777876544
No 327
>PLN02702 L-idonate 5-dehydrogenase
Probab=52.73 E-value=1.1e+02 Score=28.83 Aligned_cols=57 Identities=25% Similarity=0.350 Sum_probs=42.2
Q ss_pred HcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEE
Q 021570 128 QKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVL 187 (311)
Q Consensus 128 ~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~ 187 (311)
+...+.+|+..+|. ..|..|.++...|+.+|.+.++.+.. ...|...++.+|++...
T Consensus 175 ~~~~~~~g~~vlI~-g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~~~ 231 (364)
T PLN02702 175 RRANIGPETNVLVM-GAGPIGLVTMLAARAFGAPRIVIVDV--DDERLSVAKQLGADEIV 231 (364)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHhCCCEEE
Confidence 44556666555555 57899999999999999986555543 46778888889987654
No 328
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=52.55 E-value=1.7e+02 Score=26.08 Aligned_cols=56 Identities=27% Similarity=0.512 Sum_probs=39.1
Q ss_pred cCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEE
Q 021570 129 KGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVL 187 (311)
Q Consensus 129 ~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~ 187 (311)
.+.+.+|+..++.+.+|..|.+++..++.+|.+++++... ..+.+.++.+|++.+.
T Consensus 134 ~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~~ 189 (323)
T cd08241 134 RARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASS---EEKLALARALGADHVI 189 (323)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCC---HHHHHHHHHcCCceee
Confidence 4556666666666667999999999999999985555332 3556666677875444
No 329
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=52.53 E-value=1.7e+02 Score=27.98 Aligned_cols=81 Identities=10% Similarity=0.010 Sum_probs=48.5
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCC--CCCCCce-EEeeCcChHHHHHHHHHHH-cCCeEEEEECCCCCHHHHHHHHhcC
Q 021570 107 IMEPCCSVKDRIGFSMIADAEQKGL--ITPGKSI-LVEPTSGNTGIGLAFIAAS-KGYKLILTMPASMSLERRVLLKAFG 182 (311)
Q Consensus 107 ~~nPtGS~KdRga~~~v~~A~~~G~--~~~g~~~-vv~aSsGN~g~AlA~~aa~-~Gi~~~vv~p~~~~~~k~~~l~~~G 182 (311)
+..+.|....|-+..... ...+. +.+. .. |+..+++..|..++..+-. ..-.-.|++|.-.-+.-...++.+|
T Consensus 65 Y~~~~G~~~lR~aia~~~--~~~~~~~~~~~-~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~~~g 141 (396)
T PRK09257 65 YLPIEGLAAYRQAVQELL--FGADSPALAAG-RVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFEAAG 141 (396)
T ss_pred cCCCCCCHHHHHHHHHHh--cCCCCcccccC-eEEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHHHHHHHcC
Confidence 334578888887655443 22332 2332 21 3677777888888864332 1212356666655555577788899
Q ss_pred CEEEEECC
Q 021570 183 AELVLTDS 190 (311)
Q Consensus 183 A~V~~v~~ 190 (311)
++++.++-
T Consensus 142 ~~~v~v~~ 149 (396)
T PRK09257 142 LEVKTYPY 149 (396)
T ss_pred CcEEEEec
Confidence 99998863
No 330
>PLN02342 ornithine carbamoyltransferase
Probab=52.48 E-value=51 Score=31.80 Aligned_cols=61 Identities=15% Similarity=0.236 Sum_probs=41.2
Q ss_pred HcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCC--CHHHHHHHHhcCC-EEEEEC
Q 021570 128 QKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASM--SLERRVLLKAFGA-ELVLTD 189 (311)
Q Consensus 128 ~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~--~~~k~~~l~~~GA-~V~~v~ 189 (311)
+.|.+. |.+..+++-..|.+.+++.+++++|++++++.|+.. +...++.++..|. ++...+
T Consensus 188 ~~G~l~-glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~ 251 (348)
T PLN02342 188 HIGRLE-GTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITN 251 (348)
T ss_pred HhCCcC-CCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEc
Confidence 456543 323334444468999999999999999999999863 4445555666674 665554
No 331
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=52.41 E-value=1.2e+02 Score=27.67 Aligned_cols=48 Identities=31% Similarity=0.391 Sum_probs=36.1
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEE
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVL 187 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~ 187 (311)
..+|.+.+|..|.+++..|+.+|.+++++.+ +..++..++.+|++-+.
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~~ 196 (325)
T cd05280 149 PVLVTGATGGVGSIAVAILAKLGYTVVALTG---KEEQADYLKSLGASEVL 196 (325)
T ss_pred EEEEECCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhcCCcEEE
Confidence 5566666799999999999999999554433 35677788889986443
No 332
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=52.29 E-value=1.5e+02 Score=25.25 Aligned_cols=68 Identities=16% Similarity=0.186 Sum_probs=37.7
Q ss_pred HhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCCCCCCcchHhhHHHHHHHHHHHcCCCCCEEEEccChh
Q 021570 179 KAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEIWEDTRGKVDIFIGGIGTG 252 (311)
Q Consensus 179 ~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~t~a~Ei~~Ql~~~pD~vv~pvG~G 252 (311)
..+|.+++.-+. .+..+++..+.+.......++++-+.+.|..-. .+ -.++++++. ..|.+++|.-.|
T Consensus 62 ~~~~v~~i~~~~-~G~~~si~~al~~~~~~~~~vlv~~~D~P~l~~---~~-i~~l~~~~~-~~~~vi~p~~~G 129 (195)
T TIGR03552 62 RNLGAPVLRDPG-PGLNNALNAALAEAREPGGAVLILMADLPLLTP---RE-LKRLLAAAT-EGDVVIAPDRGG 129 (195)
T ss_pred HhcCCEEEecCC-CCHHHHHHHHHHHhhccCCeEEEEeCCCCCCCH---HH-HHHHHHhcc-cCCEEEEecCCC
Confidence 345655543322 236677777766544322367777778887553 22 234555543 356777777555
No 333
>PRK05717 oxidoreductase; Validated
Probab=52.27 E-value=1.2e+02 Score=26.82 Aligned_cols=53 Identities=23% Similarity=0.349 Sum_probs=35.6
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHH-HHHHhcCCEEEEECCC
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERR-VLLKAFGAELVLTDSA 191 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~-~~l~~~GA~V~~v~~~ 191 (311)
+..+|++.+|.-|.++|......|.+++++-.. ..+. ...+..+.+++.+..|
T Consensus 11 k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~D 64 (255)
T PRK05717 11 RVALVTGAARGIGLGIAAWLIAEGWQVVLADLD---RERGSKVAKALGENAWFIAMD 64 (255)
T ss_pred CEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCC---HHHHHHHHHHcCCceEEEEcc
Confidence 467889999999999999999999887776322 1222 2233456566555444
No 334
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=52.22 E-value=99 Score=28.39 Aligned_cols=57 Identities=23% Similarity=0.315 Sum_probs=39.9
Q ss_pred HcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEE
Q 021570 128 QKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLT 188 (311)
Q Consensus 128 ~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v 188 (311)
+...+.+|+..++. ..|..|.+++..|+.+|++++++.+ +..+++.++.+|++.+..
T Consensus 156 ~~~~~~~~~~vlI~-g~g~iG~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~~~~ 212 (330)
T cd08245 156 RDAGPRPGERVAVL-GIGGLGHLAVQYARAMGFETVAITR---SPDKRELARKLGADEVVD 212 (330)
T ss_pred HhhCCCCCCEEEEE-CCCHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHhCCcEEec
Confidence 33456666555665 5677999999999999998766644 345667777788765543
No 335
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=52.04 E-value=2.2e+02 Score=27.05 Aligned_cols=110 Identities=13% Similarity=0.025 Sum_probs=53.3
Q ss_pred CCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEEC
Q 021570 110 PCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTD 189 (311)
Q Consensus 110 PtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~ 189 (311)
+.|..-.|.+...... ...|.-......|+..+++..+..++..+- ..-.-.|++|.-.-..-....+.+|++|+.++
T Consensus 66 ~~G~~~lr~~ia~~~~-~~~~~~~~~~~~vi~t~G~~~~l~~~~~~~-~~~gd~vlv~~P~y~~~~~~~~~~G~~v~~v~ 143 (383)
T TIGR03540 66 YEGMLAYRQAVADWYK-RRFGVELDPETEVLSLIGSKEGIAHIPLAF-VNPGDIVLVPDPGYPVYRIGTLFAGGEPYEMP 143 (383)
T ss_pred CCCCHHHHHHHHHHHH-HhhCCCCCCCCeEEECCCcHHHHHHHHHHh-CCCCCEEEEeCCCCcchHHHHHhcCCEEEEEe
Confidence 3565555654443322 223431111124666666777777766553 22223455555333334456778999998876
Q ss_pred CCC--ChHHHHHHHHHHHHhCCCceeeCCCCCCc
Q 021570 190 SAK--GMKGAVQKAEEILNSTPNAYMLQQFDNPA 221 (311)
Q Consensus 190 ~~~--~~~~a~~~a~~~~~~~~~~~~~~~~~n~~ 221 (311)
-+. ++.--.+...+...++...+|+..-+||.
T Consensus 144 ~~~~~g~~~d~~~l~~~~~~~~~~v~i~~P~NPt 177 (383)
T TIGR03540 144 LKEENGFLPDFDAIPEDIAKKAKLMFINYPNNPT 177 (383)
T ss_pred cCcccCCccCHHHHHhhccccceEEEEeCCCCCc
Confidence 531 22111122222222334667776334554
No 336
>PRK09072 short chain dehydrogenase; Provisional
Probab=51.95 E-value=94 Score=27.62 Aligned_cols=32 Identities=34% Similarity=0.435 Sum_probs=27.3
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEEC
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMP 167 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p 167 (311)
...+|++.+|-.|.+++......|.+++++..
T Consensus 6 ~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r 37 (263)
T PRK09072 6 KRVLLTGASGGIGQALAEALAAAGARLLLVGR 37 (263)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEEC
Confidence 36788899999999999999999998777654
No 337
>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=51.87 E-value=1.1e+02 Score=24.44 Aligned_cols=55 Identities=24% Similarity=0.309 Sum_probs=36.0
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCC-CCHH----HHHHHHhcCCEEEEECCC
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPAS-MSLE----RRVLLKAFGAELVLTDSA 191 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~-~~~~----k~~~l~~~GA~V~~v~~~ 191 (311)
..++++.+|..|.+++......|...++++-.+ .+.. ....++..|.++..+..+
T Consensus 2 ~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D 61 (180)
T smart00822 2 TYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVACD 61 (180)
T ss_pred EEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEECC
Confidence 357788889999999999988887544444322 2211 134556678887766554
No 338
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=51.80 E-value=55 Score=30.85 Aligned_cols=61 Identities=23% Similarity=0.275 Sum_probs=41.9
Q ss_pred HcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCC--CHHHHHH-HHhcCCEEEEEC
Q 021570 128 QKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASM--SLERRVL-LKAFGAELVLTD 189 (311)
Q Consensus 128 ~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~--~~~k~~~-l~~~GA~V~~v~ 189 (311)
+.|.+. |.+..+++-.+|...+++..++++|++++++.|+.. +...++. .+..|.++...+
T Consensus 146 ~~g~l~-gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~ 209 (304)
T PRK00779 146 HRGSLK-GLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTH 209 (304)
T ss_pred HhCCcC-CcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEc
Confidence 346543 224444444589999999999999999999999863 2333333 456788887654
No 339
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=51.71 E-value=64 Score=30.98 Aligned_cols=54 Identities=19% Similarity=0.161 Sum_probs=39.5
Q ss_pred ceEEeeCc---ChHHHHHHHH-HHHcCCeEEEEECCC--CCHHHHHHHHhcCCEEEEECC
Q 021570 137 SILVEPTS---GNTGIGLAFI-AASKGYKLILTMPAS--MSLERRVLLKAFGAELVLTDS 190 (311)
Q Consensus 137 ~~vv~aSs---GN~g~AlA~~-aa~~Gi~~~vv~p~~--~~~~k~~~l~~~GA~V~~v~~ 190 (311)
.+|+-... +|.+.+++.. ++.+|++++++.|+. .+...++.++..|.++..++.
T Consensus 160 ~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d 219 (338)
T PRK08192 160 MHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQ 219 (338)
T ss_pred CEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcC
Confidence 34544445 6889999976 567799999999986 355556667778888877654
No 340
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=51.65 E-value=1.9e+02 Score=26.45 Aligned_cols=115 Identities=17% Similarity=0.179 Sum_probs=63.2
Q ss_pred HHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCE--EEE--E---CCCCChHHHHHHHHHHHHhCCCceeeCCCC---
Q 021570 149 IGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAE--LVL--T---DSAKGMKGAVQKAEEILNSTPNAYMLQQFD--- 218 (311)
Q Consensus 149 ~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~--V~~--v---~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~--- 218 (311)
.+++.+-+++|-+++++ .-++--.+++.+ +|.| |++ + .++.. +++|.---++.++.+.++...
T Consensus 21 Anig~aLA~~GkKv~li-D~DiGLRNLDli--mGlE~RiVYd~vdVi~g~~~----l~QALIkDKr~~nL~lLPAsQtrd 93 (272)
T COG2894 21 ANIGTALAQLGKKVVLI-DFDIGLRNLDLI--MGLENRIVYDLVDVIEGEAT----LNQALIKDKRLENLFLLPASQTRD 93 (272)
T ss_pred HHHHHHHHHcCCeEEEE-ecCcCchhhhhh--hcccceeeeeehhhhcCccc----hhhHhhccccCCceEecccccccC
Confidence 44444555788887765 556666666665 4554 432 1 22222 222221112223445443322
Q ss_pred -CCcchHhhHHHHHHHHHHHcCCCCCEEEEccChhhHHHHHHHHHHhc--CCCCEEEEEeCCCC
Q 021570 219 -NPANPKIHYETTGPEIWEDTRGKVDIFIGGIGTGGTISGAGRYLKEK--NPNIKVIIFVLFIS 279 (311)
Q Consensus 219 -n~~~~~~G~~t~a~Ei~~Ql~~~pD~vv~pvG~Gg~~~Gi~~~lk~~--~p~~~iigVe~~~s 279 (311)
+....+ +.+.+-.|+.+ .++|+|++=+ .+||-+||+.. +-+--|+.+.||-|
T Consensus 94 Kdalt~E-~v~~vv~eL~~---~~fDyIi~Ds-----PAGIE~G~~~A~~~Ad~AiVVtnPEvS 148 (272)
T COG2894 94 KDALTPE-GVKKVVNELKA---MDFDYIIIDS-----PAGIEQGFKNAVYFADEAIVVTNPEVS 148 (272)
T ss_pred cccCCHH-HHHHHHHHHHh---cCCCEEEecC-----cchHHHHHHhhhhccceEEEEcCCCcc
Confidence 233443 66666666654 3699999865 67888888753 23556777777765
No 341
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=51.44 E-value=83 Score=27.97 Aligned_cols=67 Identities=15% Similarity=0.088 Sum_probs=40.8
Q ss_pred ceEEeeCc--ChHHHHHHHHHHHcCCeEEEEEC----CCC----CH----HHHHHHHhcCCEEEEECCCCChHHHHHHHH
Q 021570 137 SILVEPTS--GNTGIGLAFIAASKGYKLILTMP----ASM----SL----ERRVLLKAFGAELVLTDSAKGMKGAVQKAE 202 (311)
Q Consensus 137 ~~vv~aSs--GN~g~AlA~~aa~~Gi~~~vv~p----~~~----~~----~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~ 202 (311)
..+|++.+ +.-|.++|......|.++++... ... .. .....++..|.+++.+..|-.-.+.++.+.
T Consensus 8 ~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~i~~~~ 87 (256)
T PRK12859 8 VAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDAPKELL 87 (256)
T ss_pred EEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHH
Confidence 56777766 48999999999999998777521 110 11 122445677888876655432234444443
Q ss_pred H
Q 021570 203 E 203 (311)
Q Consensus 203 ~ 203 (311)
+
T Consensus 88 ~ 88 (256)
T PRK12859 88 N 88 (256)
T ss_pred H
Confidence 3
No 342
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=51.42 E-value=1.1e+02 Score=28.35 Aligned_cols=58 Identities=22% Similarity=0.311 Sum_probs=40.9
Q ss_pred HHcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEE
Q 021570 127 EQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVL 187 (311)
Q Consensus 127 ~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~ 187 (311)
.+.+.+.+|++.+|. .+|-.|.+++..|+.+|.+.++++.. +..+...++.+|++-+.
T Consensus 155 ~~~~~~~~g~~vlI~-g~g~vG~~a~~lak~~G~~~v~~~~~--~~~~~~~~~~~g~~~vi 212 (343)
T cd05285 155 CRRAGVRPGDTVLVF-GAGPIGLLTAAVAKAFGATKVVVTDI--DPSRLEFAKELGATHTV 212 (343)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHcCCcEEe
Confidence 466777888666665 56888999999999999984444422 25566777778886544
No 343
>PRK06500 short chain dehydrogenase; Provisional
Probab=51.40 E-value=1.3e+02 Score=26.23 Aligned_cols=52 Identities=13% Similarity=0.155 Sum_probs=35.7
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHH-HHHhcCCEEEEECC
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRV-LLKAFGAELVLTDS 190 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~-~l~~~GA~V~~v~~ 190 (311)
+..+|++.+|..|.+++......|.+++++.. + ..+.. ..+.+|.++..+..
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~v~~~~r-~--~~~~~~~~~~~~~~~~~~~~ 59 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGARVAITGR-D--PASLEAARAELGESALVIRA 59 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecC-C--HHHHHHHHHHhCCceEEEEe
Confidence 46788999999999999999999998766533 2 22322 23345777655443
No 344
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=51.40 E-value=92 Score=29.61 Aligned_cols=55 Identities=24% Similarity=0.311 Sum_probs=39.9
Q ss_pred HcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEE
Q 021570 128 QKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAEL 185 (311)
Q Consensus 128 ~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V 185 (311)
+...+.+|+..+| ...|..|.+++..|+.+|...++++ +....|...++.+|+..
T Consensus 170 ~~~~~~~g~~vlI-~g~g~vg~~~~~~a~~~G~~~vi~~--~~~~~~~~~~~~~g~~~ 224 (375)
T cd08282 170 ELAGVQPGDTVAV-FGAGPVGLMAAYSAILRGASRVYVV--DHVPERLDLAESIGAIP 224 (375)
T ss_pred HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCeE
Confidence 4445666755555 5679999999999999998544444 33578888888999854
No 345
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=51.37 E-value=1.3e+02 Score=26.15 Aligned_cols=53 Identities=21% Similarity=0.203 Sum_probs=36.7
Q ss_pred EEeeCcChHHHHHHHHHHHcCCeEEEEECCCCC--HHHHHHHHhcCCEEEEECCC
Q 021570 139 LVEPTSGNTGIGLAFIAASKGYKLILTMPASMS--LERRVLLKAFGAELVLTDSA 191 (311)
Q Consensus 139 vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~--~~k~~~l~~~GA~V~~v~~~ 191 (311)
+|++.+|.-|.++|......|.+++++...+.+ ......++..+.++..+..|
T Consensus 2 lItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D 56 (239)
T TIGR01831 2 LVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQAQGGNARLLQFD 56 (239)
T ss_pred EEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEcc
Confidence 678889999999999999999997766533221 12234455667777666554
No 346
>PRK14031 glutamate dehydrogenase; Provisional
Probab=51.34 E-value=69 Score=32.02 Aligned_cols=52 Identities=12% Similarity=-0.035 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEEC
Q 021570 116 DRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMP 167 (311)
Q Consensus 116 dRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p 167 (311)
-||..+.+..+.+..-+.....+|+.-..||-|..+|.....+|.+++++.+
T Consensus 208 g~Gv~~~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD 259 (444)
T PRK14031 208 GYGNIYFLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSD 259 (444)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 5788888877654432344347899999999999999999999999999876
No 347
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=51.18 E-value=93 Score=28.54 Aligned_cols=26 Identities=8% Similarity=0.119 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhc-CCCCEEEEEeCCCC
Q 021570 254 TISGAGRYLKEK-NPNIKVIIFVLFIS 279 (311)
Q Consensus 254 ~~~Gi~~~lk~~-~p~~~iigVe~~~s 279 (311)
.+..+++.++.+ +++-.++...--++
T Consensus 122 S~~~lak~a~~lM~~ggSiltLtYlgs 148 (259)
T COG0623 122 SFTALAKAARPLMNNGGSILTLTYLGS 148 (259)
T ss_pred hHHHHHHHHHHhcCCCCcEEEEEeccc
Confidence 455666666653 23334554444443
No 348
>PLN02253 xanthoxin dehydrogenase
Probab=51.16 E-value=90 Score=28.03 Aligned_cols=32 Identities=19% Similarity=0.169 Sum_probs=27.2
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEEC
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMP 167 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p 167 (311)
+..+|++.+|.-|.++|...+..|.+++++-.
T Consensus 19 k~~lItGas~gIG~~la~~l~~~G~~v~~~~~ 50 (280)
T PLN02253 19 KVALVTGGATGIGESIVRLFHKHGAKVCIVDL 50 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeC
Confidence 36789999999999999999999998777643
No 349
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=51.15 E-value=1.9e+02 Score=27.52 Aligned_cols=32 Identities=25% Similarity=0.285 Sum_probs=28.5
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECC
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPA 168 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~ 168 (311)
++|..-.+|..|.++|..++..|++++++=+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~ 39 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPA 39 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 45778899999999999999999999999764
No 350
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=51.15 E-value=1.1e+02 Score=28.32 Aligned_cols=57 Identities=26% Similarity=0.278 Sum_probs=38.7
Q ss_pred HcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEE
Q 021570 128 QKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVL 187 (311)
Q Consensus 128 ~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~ 187 (311)
..+.+.+|+..++. .+|-.|.++...|+.+|...++.+ ..+..+...++.+|++-+.
T Consensus 161 ~~~~~~~~~~VlI~-g~g~vg~~~iqlak~~g~~~v~~~--~~~~~~~~~~~~~g~~~vi 217 (347)
T cd05278 161 ELAGIKPGSTVAVI-GAGPVGLCAVAGARLLGAARIIAV--DSNPERLDLAKEAGATDII 217 (347)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEE--eCCHHHHHHHHHhCCcEEE
Confidence 34556677565664 568889999999999997444444 3345777777888875433
No 351
>COG4558 ChuT ABC-type hemin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=51.07 E-value=96 Score=29.18 Aligned_cols=54 Identities=19% Similarity=0.001 Sum_probs=34.3
Q ss_pred cchHhhHHHHHHHHHHHcCC---------------------CCCEEEEccChhhHHHHHHHHHHhc--------CCCCEE
Q 021570 221 ANPKIHYETTGPEIWEDTRG---------------------KVDIFIGGIGTGGTISGAGRYLKEK--------NPNIKV 271 (311)
Q Consensus 221 ~~~~~G~~t~a~Ei~~Ql~~---------------------~pD~vv~pvG~Gg~~~Gi~~~lk~~--------~p~~~i 271 (311)
..+ +|..|.+.+|++-.++ +||.|++..-++-..+|.- .+.++ ..+-|+
T Consensus 192 ~~v-aG~~t~ad~iI~lAGG~~a~~~~~~yKpls~EAliaa~PDvivm~~r~~~~~gg~d-~L~~~PgiA~TpAgknkrl 269 (300)
T COG4558 192 PLV-AGKGTAADAIIELAGGVNAAAGIEGYKPLSAEALIAANPDVIVMMSRGLDGDGGAD-ELFALPGIAQTPAGKNKRL 269 (300)
T ss_pred eEe-ecCCccHHHHHHhccCcccccccccccccCHHHHhhcCCCEEEEecCCccccccHH-HHhhCcccccCccccCCcE
Confidence 344 5888888888776652 5899998877666666654 44432 124466
Q ss_pred EEEeC
Q 021570 272 IIFVL 276 (311)
Q Consensus 272 igVe~ 276 (311)
|.++.
T Consensus 270 i~~D~ 274 (300)
T COG4558 270 ITVDG 274 (300)
T ss_pred EEECC
Confidence 66654
No 352
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=50.99 E-value=1.1e+02 Score=28.03 Aligned_cols=54 Identities=28% Similarity=0.434 Sum_probs=38.9
Q ss_pred CCCCC-ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEE
Q 021570 132 ITPGK-SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLT 188 (311)
Q Consensus 132 ~~~g~-~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v 188 (311)
+.+|+ +.+|.+.+|..|.+++..|+.+|.+.++.... ..+.+.++.+|++-+..
T Consensus 142 ~~~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~---~~~~~~~~~~g~~~~~~ 196 (323)
T TIGR02823 142 LTPEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGK---AEEEDYLKELGASEVID 196 (323)
T ss_pred CCCCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHhcCCcEEEc
Confidence 56665 56666667999999999999999986555432 34557778889854433
No 353
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=50.93 E-value=92 Score=29.02 Aligned_cols=51 Identities=33% Similarity=0.421 Sum_probs=38.0
Q ss_pred CCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEE
Q 021570 133 TPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVL 187 (311)
Q Consensus 133 ~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~ 187 (311)
.+++..+|.+.+|-.|.+++..|+.+|.+.++.. + ..|...++.+|++-++
T Consensus 153 ~~~~~vlI~ga~g~vg~~~~~~a~~~G~~v~~~~--~--~~~~~~~~~~g~~~v~ 203 (339)
T cd08249 153 SKGKPVLIWGGSSSVGTLAIQLAKLAGYKVITTA--S--PKNFDLVKSLGADAVF 203 (339)
T ss_pred CCCCEEEEEcChhHHHHHHHHHHHHcCCeEEEEE--C--cccHHHHHhcCCCEEE
Confidence 5565666666779999999999999999876654 2 2667777889985443
No 354
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=50.60 E-value=1.3e+02 Score=27.53 Aligned_cols=69 Identities=14% Similarity=0.028 Sum_probs=46.7
Q ss_pred HHHhcC-CEEEEECCCCChHHHHHHHHHHHHhCCCceeeCCCCCCcchHhhHHHHHHHHHHHcCC-CCCEEEEcc
Q 021570 177 LLKAFG-AELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEIWEDTRG-KVDIFIGGI 249 (311)
Q Consensus 177 ~l~~~G-A~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~t~a~Ei~~Ql~~-~pD~vv~pv 249 (311)
+++..+ -+++..+-.. .-+.-++|.+++++. ..+-+-..++|... |...+.+|++++.+| .+|.=|+|-
T Consensus 41 ~i~l~~~k~v~~s~m~~-Ei~Ra~~AielA~~G-~~ValVSsGDpgVY--gMA~lv~E~~~~~~~~~v~veVvPG 111 (249)
T COG1010 41 LIELRPGKEVIRSGMRE-EIERAKEAIELAAEG-RDVALVSSGDPGVY--GMAGLVLEAAEEEGWYDVDVEVVPG 111 (249)
T ss_pred HHhcCCCCEEEeCCcHh-HHHHHHHHHHHHhcC-CeEEEEeCCCccHH--HhHHHHHHHHHhcCCCCccEEEeCC
Confidence 333444 4555555332 345667778888764 45666666777765 889999999998764 589999993
No 355
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=50.59 E-value=86 Score=29.78 Aligned_cols=55 Identities=25% Similarity=0.332 Sum_probs=36.6
Q ss_pred CCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEE
Q 021570 130 GLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVL 187 (311)
Q Consensus 130 G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~ 187 (311)
+.+.+|+. |+...+|..|.++...|+.+|.+++++.... ..+....+.+|++.+.
T Consensus 179 ~~~~~g~~-VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~--~~~~~~~~~~Ga~~vi 233 (360)
T PLN02586 179 GMTEPGKH-LGVAGLGGLGHVAVKIGKAFGLKVTVISSSS--NKEDEAINRLGADSFL 233 (360)
T ss_pred cccCCCCE-EEEECCCHHHHHHHHHHHHCCCEEEEEeCCc--chhhhHHHhCCCcEEE
Confidence 44556644 5556679999999999999999865543322 2334455678886544
No 356
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=50.42 E-value=1.3e+02 Score=27.17 Aligned_cols=50 Identities=30% Similarity=0.338 Sum_probs=38.1
Q ss_pred CCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEE
Q 021570 134 PGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELV 186 (311)
Q Consensus 134 ~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~ 186 (311)
+|+..++.+.+|..|.+++..|+.+|.+.++... ...+...++.+|+...
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~ 181 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVG---SPARAEGLRELGAAEV 181 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEE
Confidence 3666777777799999999999999998555432 3577888888998633
No 357
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=50.40 E-value=1e+02 Score=26.66 Aligned_cols=55 Identities=20% Similarity=0.267 Sum_probs=37.0
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCH--HHHHHHHhcCCEEEEECCC
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSL--ERRVLLKAFGAELVLTDSA 191 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~--~k~~~l~~~GA~V~~v~~~ 191 (311)
..+|++.+|..|.++|......|.+++++...+... .....+...+.++..+..+
T Consensus 7 ~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 63 (247)
T PRK05565 7 VAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKAD 63 (247)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECC
Confidence 578888999999999999888899877763433211 1223344456677666554
No 358
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=50.27 E-value=97 Score=28.60 Aligned_cols=60 Identities=27% Similarity=0.302 Sum_probs=41.9
Q ss_pred CCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCC-CHHHHHHHHhcCCEEEEEC
Q 021570 130 GLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASM-SLERRVLLKAFGAELVLTD 189 (311)
Q Consensus 130 G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~-~~~k~~~l~~~GA~V~~v~ 189 (311)
+.+.+|+..+|-..+|..|.+++..|+.+|.++++...... -..+...++.+|++-+...
T Consensus 142 ~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 202 (341)
T cd08290 142 VKLQPGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERLKALGADHVLTE 202 (341)
T ss_pred cccCCCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCCcchhHHHHHHhcCCCEEEeC
Confidence 44566655555556799999999999999999777664321 1256667777898755443
No 359
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=50.25 E-value=1e+02 Score=26.88 Aligned_cols=55 Identities=15% Similarity=0.247 Sum_probs=37.1
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHH-HHHHhcCCEEEEECCC
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERR-VLLKAFGAELVLTDSA 191 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~-~~l~~~GA~V~~v~~~ 191 (311)
..+|++.+|-.|.+++......|.+++++........++ ..++..+.++..+..+
T Consensus 3 ~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 58 (255)
T TIGR01963 3 TALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVAD 58 (255)
T ss_pred EEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECC
Confidence 568888999999999999888999877765432211122 2334456677665544
No 360
>PRK06290 aspartate aminotransferase; Provisional
Probab=50.00 E-value=2.5e+02 Score=27.25 Aligned_cols=109 Identities=9% Similarity=0.030 Sum_probs=56.2
Q ss_pred CCCchhhHHHHHHHHHHHHcCC--CCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEE
Q 021570 110 PCCSVKDRIGFSMIADAEQKGL--ITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVL 187 (311)
Q Consensus 110 PtGS~KdRga~~~v~~A~~~G~--~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~ 187 (311)
+.|.-..|.+....... ..|. +.+. ..|+.+++++.+..++..+-. +-.-.|++|.-.-..-...++.+|++++.
T Consensus 80 ~~G~~~lr~aia~~~~~-~~g~~~~~~~-~~I~it~Gs~~al~~~~~~~~-~~gd~Vlv~~P~y~~~~~~~~~~g~~v~~ 156 (410)
T PRK06290 80 DNGIQEFKEAAARYMEK-VFGVKDIDPV-TEVIHSIGSKPALAMLPSCFI-NPGDVTLMTVPGYPVTGTHTKYYGGEVYN 156 (410)
T ss_pred CCCcHHHHHHHHHHHHH-HcCCCcCCCc-ceEEEccCHHHHHHHHHHHhC-CCCCEEEEeCCCCccHHHHHHHcCCEEEE
Confidence 35666666544433221 2343 3332 247777777888777665432 22234555554444456677889999998
Q ss_pred ECCCC--ChHHHHHHHHHHHHhCCCceeeCCCCCCc
Q 021570 188 TDSAK--GMKGAVQKAEEILNSTPNAYMLQQFDNPA 221 (311)
Q Consensus 188 v~~~~--~~~~a~~~a~~~~~~~~~~~~~~~~~n~~ 221 (311)
++-+. .+....+...+...+.....|++.-+||.
T Consensus 157 v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~nP~NPT 192 (410)
T PRK06290 157 LPLLEENNFLPDLDSIPKDIKEKAKLLYLNYPNNPT 192 (410)
T ss_pred EecCCCcCCcCCHHHHHHhhcccceEEEEECCCCCC
Confidence 87542 12111222222222233566666335554
No 361
>PRK12831 putative oxidoreductase; Provisional
Probab=49.97 E-value=66 Score=32.02 Aligned_cols=52 Identities=19% Similarity=0.132 Sum_probs=40.2
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCC---C--CHHHHHHHHhcCCEEEEE
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPAS---M--SLERRVLLKAFGAELVLT 188 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~---~--~~~k~~~l~~~GA~V~~v 188 (311)
+.|++-.+||.|.-+|..+.++|.+++++...+ + ....+..++..|.+++..
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~~~a~~eGV~i~~~ 338 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEVHHAKEEGVIFDLL 338 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHHcCCEEEec
Confidence 578999999999999999999999988887532 2 234445567778887654
No 362
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=49.82 E-value=1.2e+02 Score=27.93 Aligned_cols=50 Identities=24% Similarity=0.316 Sum_probs=36.8
Q ss_pred CCceEEeeCcChHHHHHHHHHHHc-CCeEEEEECCCCCHHHHHHHHhcCCEEEE
Q 021570 135 GKSILVEPTSGNTGIGLAFIAASK-GYKLILTMPASMSLERRVLLKAFGAELVL 187 (311)
Q Consensus 135 g~~~vv~aSsGN~g~AlA~~aa~~-Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~ 187 (311)
|+..+|.+.+|..|.+++..|+.+ |.+++++... ..+.+.++.+|++-+.
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~---~~~~~~l~~~g~~~~~ 199 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATASR---PESQEWVLELGAHHVI 199 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCc---HHHHHHHHHcCCCEEE
Confidence 556666667899999999999988 9887665433 4567777888986544
No 363
>PRK07774 short chain dehydrogenase; Provisional
Probab=49.78 E-value=1.1e+02 Score=26.74 Aligned_cols=55 Identities=16% Similarity=0.150 Sum_probs=35.9
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCH-HHHHHHHhcCCEEEEECC
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSL-ERRVLLKAFGAELVLTDS 190 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~-~k~~~l~~~GA~V~~v~~ 190 (311)
...+|++.+|--|.+++......|.+++++....... ...+.++..+.++..+..
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 62 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQV 62 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEc
Confidence 3678899999999999999999999877765432111 112334444555544433
No 364
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=49.75 E-value=31 Score=29.73 Aligned_cols=30 Identities=27% Similarity=0.401 Sum_probs=25.0
Q ss_pred EEeeCcChHHHHHHHHHHHcCCeEEEEECC
Q 021570 139 LVEPTSGNTGIGLAFIAASKGYKLILTMPA 168 (311)
Q Consensus 139 vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~ 168 (311)
|..-.+|..|.++|..++..|++++++-+.
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~ 31 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRS 31 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SS
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 556678999999999999999999999764
No 365
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=49.62 E-value=2e+02 Score=27.11 Aligned_cols=55 Identities=24% Similarity=0.340 Sum_probs=38.0
Q ss_pred HcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEE
Q 021570 128 QKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAEL 185 (311)
Q Consensus 128 ~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V 185 (311)
+.+.+.+|++.+|. ..|..|.+++..|+.+|.+.++++.. +..+...++.+|++-
T Consensus 176 ~~~~~~~g~~vLI~-g~g~vG~a~i~lak~~G~~~Vi~~~~--~~~~~~~~~~~g~~~ 230 (363)
T cd08279 176 NTARVRPGDTVAVI-GCGGVGLNAIQGARIAGASRIIAVDP--VPEKLELARRFGATH 230 (363)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEEcC--CHHHHHHHHHhCCeE
Confidence 34556667666666 56999999999999999874444322 445666777888743
No 366
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=49.56 E-value=1.1e+02 Score=29.98 Aligned_cols=92 Identities=16% Similarity=0.163 Sum_probs=64.9
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCC-h--H-HHHHHHHHHHHhCCCce
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKG-M--K-GAVQKAEEILNSTPNAY 212 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~-~--~-~a~~~a~~~~~~~~~~~ 212 (311)
+..+..++|-.+..+|+.|-..|=.-.|++|.-+-....+.+...||+.+++|-+.. + + +.++.+.. .+-....
T Consensus 50 k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATan~i~~~Ga~PVFvDid~~T~nid~~~ie~aIt--~~tKAIi 127 (374)
T COG0399 50 KYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATANAVLLVGAKPVFVDIDPDTLNIDPDLIEAAIT--PRTKAII 127 (374)
T ss_pred CeEEEecChHHHHHHHHHhcCCCCCCEEEecCCchHHHHHHHHHcCCeEEEEecCCcccCCCHHHHHHHcc--cCCeEEE
Confidence 668888999999999998666777788999998888999999999999999987631 1 1 23333322 1122345
Q ss_pred eeCCCCCCcchHhhHHHHH
Q 021570 213 MLQQFDNPANPKIHYETTG 231 (311)
Q Consensus 213 ~~~~~~n~~~~~~G~~t~a 231 (311)
.++-++++..++ ....++
T Consensus 128 pVhl~G~~~dm~-~i~~la 145 (374)
T COG0399 128 PVHLAGQPCDMD-AIMALA 145 (374)
T ss_pred EehhccCCCCHH-HHHHHH
Confidence 677788887774 433333
No 367
>PRK07904 short chain dehydrogenase; Provisional
Probab=49.49 E-value=1.5e+02 Score=26.50 Aligned_cols=54 Identities=17% Similarity=0.190 Sum_probs=34.7
Q ss_pred CceEEeeCcChHHHHHHHHHHHc-CCeEEEEECCCCC--HHHHHHHHhcCC-EEEEEC
Q 021570 136 KSILVEPTSGNTGIGLAFIAASK-GYKLILTMPASMS--LERRVLLKAFGA-ELVLTD 189 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~-Gi~~~vv~p~~~~--~~k~~~l~~~GA-~V~~v~ 189 (311)
...+|++.+|-.|.++|...... |.+++++.....+ ....+.++..|. ++..+.
T Consensus 9 ~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~ 66 (253)
T PRK07904 9 QTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVID 66 (253)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEE
Confidence 36788888999999999987777 4888777543322 222344555553 554443
No 368
>PRK07102 short chain dehydrogenase; Provisional
Probab=49.47 E-value=1.1e+02 Score=26.80 Aligned_cols=55 Identities=16% Similarity=0.071 Sum_probs=35.9
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCH-HHHHHHH-hcCCEEEEECCC
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSL-ERRVLLK-AFGAELVLTDSA 191 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~-~k~~~l~-~~GA~V~~v~~~ 191 (311)
+.+|++.+|.-|.+++......|.+++++....... .....++ ..+.++..+..|
T Consensus 3 ~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D 59 (243)
T PRK07102 3 KILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELD 59 (243)
T ss_pred EEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 568889999999999999999999877765432111 1122222 235566665544
No 369
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=49.40 E-value=1.3e+02 Score=28.73 Aligned_cols=58 Identities=19% Similarity=0.106 Sum_probs=39.1
Q ss_pred CCCCCCCceEEeeCc--ChHHHHHHHHHHHcCCeEEEEECCCC--CHHHHHH----HHhcCCEEEEEC
Q 021570 130 GLITPGKSILVEPTS--GNTGIGLAFIAASKGYKLILTMPASM--SLERRVL----LKAFGAELVLTD 189 (311)
Q Consensus 130 G~~~~g~~~vv~aSs--GN~g~AlA~~aa~~Gi~~~vv~p~~~--~~~k~~~----l~~~GA~V~~v~ 189 (311)
|.+. | .+|+-... .|.+.|++.+++.+|++++++.|+.. +...+.. .+..|+++...+
T Consensus 151 g~l~-g-~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 216 (332)
T PRK04284 151 KPYK-D-IKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITD 216 (332)
T ss_pred CCcC-C-cEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 5543 2 33444433 48999999999999999999999853 3333322 345788887664
No 370
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=49.31 E-value=1.2e+02 Score=28.25 Aligned_cols=52 Identities=19% Similarity=0.191 Sum_probs=37.3
Q ss_pred CCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEE
Q 021570 132 ITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVL 187 (311)
Q Consensus 132 ~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~ 187 (311)
+.+|...+|. ..|..|.+++..|+.+|++++++.+. ..+...++.+|++-++
T Consensus 167 ~~~g~~vlV~-g~g~vG~~~~~~a~~~G~~v~~~~~~---~~~~~~~~~~g~~~vi 218 (337)
T cd05283 167 VGPGKRVGVV-GIGGLGHLAVKFAKALGAEVTAFSRS---PSKKEDALKLGADEFI 218 (337)
T ss_pred CCCCCEEEEE-CCcHHHHHHHHHHHHcCCeEEEEcCC---HHHHHHHHHcCCcEEe
Confidence 5666555664 57999999999999999976555332 4566677778876544
No 371
>PRK15452 putative protease; Provisional
Probab=49.25 E-value=2.3e+02 Score=28.29 Aligned_cols=103 Identities=17% Similarity=0.124 Sum_probs=58.6
Q ss_pred EEEECCCCCHHHHHHHHhcCCEEEEECCCC--------Ch-HHHHHHHHHHHHhCCCceeeCCCCCCcchHhhHHHHHHH
Q 021570 163 ILTMPASMSLERRVLLKAFGAELVLTDSAK--------GM-KGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYETTGPE 233 (311)
Q Consensus 163 ~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~--------~~-~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~t~a~E 233 (311)
.+.+|.. +.+++...-.+||+-+.++... .| .+-++++.+++.+.+..+|+.-..-+. + +.-....+
T Consensus 5 eLlapag-~~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~--e-~el~~~~~ 80 (443)
T PRK15452 5 ELLSPAG-TLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPH--N-AKLKTFIR 80 (443)
T ss_pred EEEEECC-CHHHHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCC--H-HHHHHHHH
Confidence 3555654 3556666667899988886542 01 134566666666664455543211111 1 22222334
Q ss_pred HHHHcC-CCCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEe
Q 021570 234 IWEDTR-GKVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFV 275 (311)
Q Consensus 234 i~~Ql~-~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe 275 (311)
.++++. ..+|.|++.- .|+...+++..|+.+|++=.
T Consensus 81 ~l~~l~~~gvDgvIV~d------~G~l~~~ke~~p~l~ih~st 117 (443)
T PRK15452 81 DLEPVIAMKPDALIMSD------PGLIMMVREHFPEMPIHLSV 117 (443)
T ss_pred HHHHHHhCCCCEEEEcC------HHHHHHHHHhCCCCeEEEEe
Confidence 445443 2499999873 47777788888888887643
No 372
>PRK12414 putative aminotransferase; Provisional
Probab=49.18 E-value=2.4e+02 Score=26.85 Aligned_cols=82 Identities=12% Similarity=0.073 Sum_probs=41.4
Q ss_pred eEEeeCcChHHHHHHHHHHH-cCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCC-ChHHHHHHHHHHHHhCCCceeeC
Q 021570 138 ILVEPTSGNTGIGLAFIAAS-KGYKLILTMPASMSLERRVLLKAFGAELVLTDSAK-GMKGAVQKAEEILNSTPNAYMLQ 215 (311)
Q Consensus 138 ~vv~aSsGN~g~AlA~~aa~-~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~-~~~~a~~~a~~~~~~~~~~~~~~ 215 (311)
.|+..++|..+..++..+-. -|= .|+++.-.-..-...++.+|++++.++-+. ++.--.+...+..+++...+++.
T Consensus 92 ~i~it~g~~~al~~~~~~l~~~gd--~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~i~ 169 (384)
T PRK12414 92 EVTVIASASEGLYAAISALVHPGD--EVIYFEPSFDSYAPIVRLQGATPVAIKLSPEDFRVNWDEVAAAITPRTRMIIVN 169 (384)
T ss_pred cEEEECChHHHHHHHHHHhcCCCC--EEEEeCCCccchHHHHHHcCCEEEEEecCccccccCHHHHHhhcCcccEEEEEc
Confidence 47777777887776665432 233 344443222233445667899998887541 11101122222222333566665
Q ss_pred CCCCCc
Q 021570 216 QFDNPA 221 (311)
Q Consensus 216 ~~~n~~ 221 (311)
..+||.
T Consensus 170 ~p~NPT 175 (384)
T PRK12414 170 TPHNPS 175 (384)
T ss_pred CCCCCC
Confidence 445553
No 373
>PRK08251 short chain dehydrogenase; Provisional
Probab=49.10 E-value=1.3e+02 Score=26.36 Aligned_cols=65 Identities=26% Similarity=0.268 Sum_probs=38.9
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHH-HHHHHhc--CCEEEEECCCCChHHHHHHH
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLER-RVLLKAF--GAELVLTDSAKGMKGAVQKA 201 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k-~~~l~~~--GA~V~~v~~~~~~~~a~~~a 201 (311)
..+|++.+|..|.++|..-...|.++++.......... ...+... |+++..+..|-.-.+.+..+
T Consensus 4 ~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 71 (248)
T PRK08251 4 KILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEV 71 (248)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHH
Confidence 57888999999999999998999876666433211111 1222222 66777665543223334333
No 374
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=49.08 E-value=1e+02 Score=28.54 Aligned_cols=49 Identities=27% Similarity=0.341 Sum_probs=35.8
Q ss_pred CCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEE
Q 021570 135 GKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVL 187 (311)
Q Consensus 135 g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~ 187 (311)
|++.+|.+.+|..|.+++..|+.+|+++++.... .+...++.+|++-+.
T Consensus 163 g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~----~~~~~~~~~g~~~~~ 211 (350)
T cd08248 163 GKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST----DAIPLVKSLGADDVI 211 (350)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc----chHHHHHHhCCceEE
Confidence 6566666668999999999999999986655432 356677778875433
No 375
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=48.96 E-value=1.3e+02 Score=28.80 Aligned_cols=52 Identities=17% Similarity=0.246 Sum_probs=29.5
Q ss_pred EEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECC
Q 021570 139 LVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDS 190 (311)
Q Consensus 139 vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~ 190 (311)
++..++|..|..++..+-..+-.-.|++|...-......+..+|++++.++-
T Consensus 51 ~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~~~~~~~~~~~G~~~v~vd~ 102 (379)
T PRK11658 51 AIAVSSATAGMHITLMALGIGPGDEVITPSLTWVSTLNMIVLLGATPVMVDV 102 (379)
T ss_pred EEEECCHHHHHHHHHHHcCCCCCCEEEECCCcHHHHHHHHHHcCCEEEEEec
Confidence 4455666666555554432222235666665545555566677888877764
No 376
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=48.88 E-value=1.3e+02 Score=27.87 Aligned_cols=77 Identities=14% Similarity=0.116 Sum_probs=56.5
Q ss_pred eCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCceEEee-CcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcC-
Q 021570 105 LEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEP-TSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFG- 182 (311)
Q Consensus 105 ~E~~nPtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~a-SsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~G- 182 (311)
+=+.||-. -+|....+.++.+.|+ +.++.. --=.+...+-.+|.++|+..+.+++.+++..++..+....
T Consensus 100 m~Y~Npi~---~~Gie~F~~~~~~~Gv-----dGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~ 171 (265)
T COG0159 100 MTYYNPIF---NYGIEKFLRRAKEAGV-----DGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAAS 171 (265)
T ss_pred EEeccHHH---HhhHHHHHHHHHHcCC-----CEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCC
Confidence 33556642 4566778888999886 344444 3346677888899999999999999999999888887766
Q ss_pred CEEEEEC
Q 021570 183 AELVLTD 189 (311)
Q Consensus 183 A~V~~v~ 189 (311)
.-|+.+.
T Consensus 172 GFiY~vs 178 (265)
T COG0159 172 GFIYYVS 178 (265)
T ss_pred CcEEEEe
Confidence 6666654
No 377
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=48.87 E-value=72 Score=30.05 Aligned_cols=61 Identities=18% Similarity=0.244 Sum_probs=41.1
Q ss_pred HcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCC--CHHHHHHH----HhcCCEEEEEC
Q 021570 128 QKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASM--SLERRVLL----KAFGAELVLTD 189 (311)
Q Consensus 128 ~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~--~~~k~~~l----~~~GA~V~~v~ 189 (311)
+.|.+. |.+..+++-.+|...|++.+++++|++++++.|+.. +....+.+ +..|+++...+
T Consensus 142 ~~g~l~-g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 208 (304)
T TIGR00658 142 HFGKLK-GVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTH 208 (304)
T ss_pred HhCCCC-CcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 345443 223333444479999999999999999999999863 33333333 45788887665
No 378
>PRK08912 hypothetical protein; Provisional
Probab=48.77 E-value=2.4e+02 Score=26.75 Aligned_cols=80 Identities=11% Similarity=0.039 Sum_probs=46.9
Q ss_pred CCCCchhhHHHHHHHHHHHHcCC-CCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEE
Q 021570 109 EPCCSVKDRIGFSMIADAEQKGL-ITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVL 187 (311)
Q Consensus 109 nPtGS~KdRga~~~v~~A~~~G~-~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~ 187 (311)
.+.|.-..|.+...... ...|. +.+. ..|+..+++..+..++..+-. +-.-.|+++.-.-..-...++.+|++++.
T Consensus 61 ~~~G~~~lr~~ia~~~~-~~~g~~~~~~-~~i~~t~G~~~al~~~~~~~~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~ 137 (387)
T PRK08912 61 PMMGLPELRQAVAAHYA-RFQGLDLDPE-TEVMVTSGATEALAAALLALV-EPGDEVVLFQPLYDAYLPLIRRAGGVPRL 137 (387)
T ss_pred CCCCcHHHHHHHHHHHH-HHhCCCCCCc-ccEEEeCCcHHHHHHHHHHhc-CCCCEEEEeCCCchhhHHHHHHcCCEEEE
Confidence 34677777765554332 22342 2321 257777888888876666542 22234555554444445677889999988
Q ss_pred ECCC
Q 021570 188 TDSA 191 (311)
Q Consensus 188 v~~~ 191 (311)
++-+
T Consensus 138 ~~~~ 141 (387)
T PRK08912 138 VRLE 141 (387)
T ss_pred EecC
Confidence 7653
No 379
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=48.74 E-value=1.7e+02 Score=24.98 Aligned_cols=41 Identities=17% Similarity=0.126 Sum_probs=24.3
Q ss_pred EEeeCcChHHHHHHHHHHH----cCCeEEEEECC-CCCHHHHHHHH
Q 021570 139 LVEPTSGNTGIGLAFIAAS----KGYKLILTMPA-SMSLERRVLLK 179 (311)
Q Consensus 139 vv~aSsGN~g~AlA~~aa~----~Gi~~~vv~p~-~~~~~k~~~l~ 179 (311)
+|.+|+|.++.-+...-.. ...+..++.-. ..+..|..+++
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~ 48 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLE 48 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHH
Confidence 5666777777777776665 45555555533 34555555443
No 380
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=48.70 E-value=1.2e+02 Score=28.18 Aligned_cols=66 Identities=27% Similarity=0.302 Sum_probs=44.5
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHH-HHH-HhcCCEEEEECCCCChHHHHHHH
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERR-VLL-KAFGAELVLTDSAKGMKGAVQKA 201 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~-~~l-~~~GA~V~~v~~~~~~~~a~~~a 201 (311)
...+|++.|+.-|.++|..-++.|.+++++......-..+ .++ +.+|.+|...+-|-.-.+..+..
T Consensus 7 ~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l 74 (265)
T COG0300 7 KTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERL 74 (265)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHH
Confidence 4678999999999999999999999999998654322222 123 34677776666553223344443
No 381
>PRK09291 short chain dehydrogenase; Provisional
Probab=48.65 E-value=66 Score=28.31 Aligned_cols=32 Identities=25% Similarity=0.326 Sum_probs=27.9
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECC
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPA 168 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~ 168 (311)
..+|++.+|..|.+++......|.++++....
T Consensus 4 ~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~ 35 (257)
T PRK09291 4 TILITGAGSGFGREVALRLARKGHNVIAGVQI 35 (257)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 57899999999999999999999998877653
No 382
>PRK06836 aspartate aminotransferase; Provisional
Probab=48.51 E-value=2.2e+02 Score=27.25 Aligned_cols=109 Identities=14% Similarity=0.142 Sum_probs=53.3
Q ss_pred CCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEEC
Q 021570 110 PCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTD 189 (311)
Q Consensus 110 PtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~ 189 (311)
+.|.-..|.+..........-.+.+ ..|+..++++.+..++..+- ..-.-.|+++...-..-...++.+|++++.++
T Consensus 72 ~~g~~~lr~~ia~~l~~~~~~~~~~--~~i~~t~G~~~al~~~~~~l-~~~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~ 148 (394)
T PRK06836 72 NAGYPEVREAIAESLNRRFGTPLTA--DHIVMTCGAAGALNVALKAI-LNPGDEVIVFAPYFVEYRFYVDNHGGKLVVVP 148 (394)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCc--CcEEEeCChHHHHHHHHHHh-cCCCCEEEEcCCCCccHHHHHHHcCCEEEEEe
Confidence 3555555654433332221112233 34666677777776665443 22223455555433334556778999999887
Q ss_pred CCCC-hHHHHHHHHHHHHhCCCceeeCCCCCCc
Q 021570 190 SAKG-MKGAVQKAEEILNSTPNAYMLQQFDNPA 221 (311)
Q Consensus 190 ~~~~-~~~a~~~a~~~~~~~~~~~~~~~~~n~~ 221 (311)
.+.. +.--.+...+...++...+++...+||.
T Consensus 149 ~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPt 181 (394)
T PRK06836 149 TDTDTFQPDLDALEAAITPKTKAVIINSPNNPT 181 (394)
T ss_pred cCCccCcCCHHHHHhhcCcCceEEEEeCCCCCC
Confidence 5421 1101122222223333556665445554
No 383
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=48.34 E-value=2e+02 Score=27.99 Aligned_cols=80 Identities=15% Similarity=0.120 Sum_probs=47.2
Q ss_pred eEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCC-ChH-HHHHHHHHHHHhCCCceeeC
Q 021570 138 ILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAK-GMK-GAVQKAEEILNSTPNAYMLQ 215 (311)
Q Consensus 138 ~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~-~~~-~a~~~a~~~~~~~~~~~~~~ 215 (311)
.|+..++++.+..++..+-..-=+ .|+++.-.-..-...++.+|++++.++-+. +++ +.++. ..++....+|+.
T Consensus 143 ~Iiit~G~~~al~~~~~~l~~pgd-~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~g~~~~~l~~---~~~~~~k~i~~~ 218 (431)
T PRK15481 143 EIDLTSGAIDAIERLLCAHLLPGD-SVAVEDPCFLSSINMLRYAGFSASPVSVDAEGMQPEKLER---ALAQGARAVILT 218 (431)
T ss_pred eEEEecCcHHHHHHHHHHhCCCCC-EEEEeCCCcHHHHHHHHHcCCeEEeeccCCCCCCHHHHHH---HHhcCCCEEEEC
Confidence 588888888888877765432112 344554444555777888999999987542 222 23322 222334566665
Q ss_pred -CCCCCc
Q 021570 216 -QFDNPA 221 (311)
Q Consensus 216 -~~~n~~ 221 (311)
..+||.
T Consensus 219 p~p~NPT 225 (431)
T PRK15481 219 PRAHNPT 225 (431)
T ss_pred CCCCCCC
Confidence 455654
No 384
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=48.33 E-value=1.4e+02 Score=26.62 Aligned_cols=67 Identities=18% Similarity=0.157 Sum_probs=37.4
Q ss_pred ceEEeeCc--ChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHH-hc-CCEEEEECCCCChHHHHHHHHH
Q 021570 137 SILVEPTS--GNTGIGLAFIAASKGYKLILTMPASMSLERRVLLK-AF-GAELVLTDSAKGMKGAVQKAEE 203 (311)
Q Consensus 137 ~~vv~aSs--GN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~-~~-GA~V~~v~~~~~~~~a~~~a~~ 203 (311)
..+|++.+ +.-|.++|..-++.|.++++.-.......+++.+. .. |.+++.+..|-.-.+.++.+.+
T Consensus 9 ~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 79 (257)
T PRK08594 9 TYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFE 79 (257)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHH
Confidence 55677754 78999999999999998776533222233343332 22 4555544333222344444433
No 385
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=48.25 E-value=72 Score=30.60 Aligned_cols=53 Identities=19% Similarity=0.343 Sum_probs=37.5
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCC--CCHHHHHHHH----hcCCEEEEEC
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPAS--MSLERRVLLK----AFGAELVLTD 189 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~--~~~~k~~~l~----~~GA~V~~v~ 189 (311)
+..+++-..|.+.++...++++|++++++.|+. .+...+..++ ..|+++...+
T Consensus 156 kv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 214 (338)
T PRK02255 156 KVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTD 214 (338)
T ss_pred EEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEc
Confidence 333444447999999999999999999999986 3444444433 3587776654
No 386
>PRK05826 pyruvate kinase; Provisional
Probab=48.23 E-value=2.8e+02 Score=27.93 Aligned_cols=122 Identities=12% Similarity=0.083 Sum_probs=71.9
Q ss_pred HHHHHHHcCCeEEEE-----------ECCCCCHHHHHHHHhcCCEEEEECCCC----ChHHHHHHHHHHHHhCCCceeeC
Q 021570 151 LAFIAASKGYKLILT-----------MPASMSLERRVLLKAFGAELVLTDSAK----GMKGAVQKAEEILNSTPNAYMLQ 215 (311)
Q Consensus 151 lA~~aa~~Gi~~~vv-----------~p~~~~~~k~~~l~~~GA~V~~v~~~~----~~~~a~~~a~~~~~~~~~~~~~~ 215 (311)
+...|+..|.++.+- .|..+....+...-..|++-+...+.. .-.++++...+++++-+..++..
T Consensus 264 Ii~~c~~~gKpvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~vmLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~ 343 (465)
T PRK05826 264 IIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGKYPVEAVEAMARICKGAEKEFSIN 343 (465)
T ss_pred HHHHHHHcCCCEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEEEeccccccCcCHHHHHHHHHHHHHHHHhccchh
Confidence 345688889988763 243344445556667799977665432 12455555444443222211110
Q ss_pred ---CC-CC--CcchHhhHHHHHHHHHHHcCCCCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeCCC
Q 021570 216 ---QF-DN--PANPKIHYETTGPEIWEDTRGKVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFI 278 (311)
Q Consensus 216 ---~~-~n--~~~~~~G~~t~a~Ei~~Ql~~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~ 278 (311)
.. .. .... ......+.++.++++ ..++||+.+-+|.++-.++++ .|.+.|+++.+..
T Consensus 344 ~~~~~~~~~~~~~~-~~ia~aa~~~a~~l~-~a~~Ivv~T~sG~ta~~isk~----RP~~pI~~~t~~~ 406 (465)
T PRK05826 344 LSKHRLDRQFDRID-EAIAMSAMYAANHLK-GVKAIVALTESGRTARLISRF----RPGAPIFAVTRDE 406 (465)
T ss_pred hhhhhccccccchH-HHHHHHHHHHHHhcC-CCCEEEEECCCcHHHHHHHhh----CCCCCEEEEcCCH
Confidence 00 01 1112 244556677777774 267899999999988776554 5888899998764
No 387
>PRK06123 short chain dehydrogenase; Provisional
Probab=48.18 E-value=91 Score=27.22 Aligned_cols=67 Identities=18% Similarity=0.237 Sum_probs=40.2
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCC--CHHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASM--SLERRVLLKAFGAELVLTDSAKGMKGAVQKAEE 203 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~--~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~ 203 (311)
..+|++.+|.-|.++|..-...|..+++...... .......++..|.+++.+..+-.-.+.++.+.+
T Consensus 4 ~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~ 72 (248)
T PRK06123 4 VMIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFE 72 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHH
Confidence 5688889999999999998888987555432221 112233455667776655444322344444433
No 388
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=47.97 E-value=65 Score=30.86 Aligned_cols=55 Identities=15% Similarity=0.105 Sum_probs=36.0
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCC
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSA 191 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~ 191 (311)
+.++..++|..|..++..+...+-.-.|++|...-..-...++..|++++.++.+
T Consensus 47 ~~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~~~~~~~G~~~v~~d~d 101 (375)
T PRK11706 47 AKVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIR 101 (375)
T ss_pred CeEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecC
Confidence 4567777777776666554333333467777766666677777788888887654
No 389
>CHL00194 ycf39 Ycf39; Provisional
Probab=47.90 E-value=93 Score=28.82 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=27.7
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECC
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPA 168 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~ 168 (311)
+.+|++.+|..|..++......|.+++++...
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcC
Confidence 35888999999999999999999998888743
No 390
>PRK07576 short chain dehydrogenase; Provisional
Probab=47.77 E-value=1.3e+02 Score=26.86 Aligned_cols=56 Identities=16% Similarity=0.157 Sum_probs=36.7
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhcCCEEEEECCC
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMS-LERRVLLKAFGAELVLTDSA 191 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~-~~k~~~l~~~GA~V~~v~~~ 191 (311)
+..+|++.+|.-|.+++...+..|.+++++...... ......+...+.+++.+..|
T Consensus 10 k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 66 (264)
T PRK07576 10 KNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSAD 66 (264)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECC
Confidence 367888899999999999999999987666433211 11123445556666555443
No 391
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=47.42 E-value=1.8e+02 Score=24.84 Aligned_cols=32 Identities=28% Similarity=0.417 Sum_probs=25.4
Q ss_pred CCceEEeeCcChHHHHHHHHHHHcCCeEEEEE
Q 021570 135 GKSILVEPTSGNTGIGLAFIAASKGYKLILTM 166 (311)
Q Consensus 135 g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~ 166 (311)
+.+.++.+.+|..|.+++......|.+++++-
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~ 59 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVG 59 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEc
Confidence 34567777789999999999999998776664
No 392
>PRK13243 glyoxylate reductase; Reviewed
Probab=47.27 E-value=1.5e+02 Score=28.15 Aligned_cols=104 Identities=18% Similarity=0.189 Sum_probs=65.6
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCC
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQ 216 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~ 216 (311)
++|..-..|+-|.++|..++.+|+++.++=+.. ... ....+|+.. . + .++. .++. +...+.-
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~-~~~---~~~~~~~~~--~--~--l~el-------l~~a-DiV~l~l 212 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTR-KPE---AEKELGAEY--R--P--LEEL-------LRES-DFVSLHV 212 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCC-Chh---hHHHcCCEe--c--C--HHHH-------HhhC-CEEEEeC
Confidence 678888999999999999999999987765432 221 223445431 1 1 2322 2222 3444433
Q ss_pred CCCCcchHhhHHHHHHHHHHHcCCCCCEEEEccChhhHH--HHHHHHHHh
Q 021570 217 FDNPANPKIHYETTGPEIWEDTRGKVDIFIGGIGTGGTI--SGAGRYLKE 264 (311)
Q Consensus 217 ~~n~~~~~~G~~t~a~Ei~~Ql~~~pD~vv~pvG~Gg~~--~Gi~~~lk~ 264 (311)
|... +-...+..|.+++++ ++++++-+|.|+.+ -.+..++++
T Consensus 213 ---P~t~-~T~~~i~~~~~~~mk--~ga~lIN~aRg~~vd~~aL~~aL~~ 256 (333)
T PRK13243 213 ---PLTK-ETYHMINEERLKLMK--PTAILVNTARGKVVDTKALVKALKE 256 (333)
T ss_pred ---CCCh-HHhhccCHHHHhcCC--CCeEEEECcCchhcCHHHHHHHHHc
Confidence 2222 133445668888884 89999999999987 556666664
No 393
>PRK06720 hypothetical protein; Provisional
Probab=47.17 E-value=1.8e+02 Score=24.66 Aligned_cols=53 Identities=23% Similarity=0.215 Sum_probs=32.7
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHH-HHHHHhcCCEEEEE
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLER-RVLLKAFGAELVLT 188 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k-~~~l~~~GA~V~~v 188 (311)
+..+|++.+|--|.++|......|.+++++-........ ...++..|.++..+
T Consensus 17 k~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~ 70 (169)
T PRK06720 17 KVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGGEALFV 70 (169)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEE
Confidence 356788888889999999888889886665432211111 23444556555444
No 394
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=47.15 E-value=34 Score=35.67 Aligned_cols=51 Identities=22% Similarity=0.271 Sum_probs=39.2
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCC---------C---------HHHHHHHHhcCCEEEE
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASM---------S---------LERRVLLKAFGAELVL 187 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~---------~---------~~k~~~l~~~GA~V~~ 187 (311)
+.|+.-.+|-.|++.|.+.++.|.+++||=.... + ...+..++.+|.++..
T Consensus 328 ~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~ 396 (654)
T PRK12769 328 KRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFEL 396 (654)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEEC
Confidence 5799999999999999999999999988843211 1 1235567788988764
No 395
>PRK07069 short chain dehydrogenase; Validated
Probab=47.12 E-value=1.9e+02 Score=25.09 Aligned_cols=31 Identities=26% Similarity=0.310 Sum_probs=25.2
Q ss_pred eEEeeCcChHHHHHHHHHHHcCCeEEEEECC
Q 021570 138 ILVEPTSGNTGIGLAFIAASKGYKLILTMPA 168 (311)
Q Consensus 138 ~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~ 168 (311)
.+|++.+|.-|.++|..-.+.|.+++++...
T Consensus 2 ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~ 32 (251)
T PRK07069 2 AFITGAAGGLGRAIARRMAEQGAKVFLTDIN 32 (251)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 4788888999999999988889887776543
No 396
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=47.10 E-value=1.3e+02 Score=26.16 Aligned_cols=53 Identities=17% Similarity=0.245 Sum_probs=35.1
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHH-HHhcCCEEEEECCC
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVL-LKAFGAELVLTDSA 191 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~-l~~~GA~V~~v~~~ 191 (311)
..+|++.+|.-|.++|..-...|.++++...... .+... ...++.++..+..|
T Consensus 7 ~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~D 60 (253)
T PRK08642 7 TVLVTGGSRGLGAAIARAFAREGARVVVNYHQSE--DAAEALADELGDRAIALQAD 60 (253)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCH--HHHHHHHHHhCCceEEEEcC
Confidence 6789999999999999999999998877554322 22222 23345555544433
No 397
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=46.99 E-value=97 Score=24.00 Aligned_cols=92 Identities=21% Similarity=0.179 Sum_probs=47.0
Q ss_pred HHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECC--CCChHHHHHHHHHHHHhCCCceeeCCCCCCcchHhh
Q 021570 149 IGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDS--AKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIH 226 (311)
Q Consensus 149 ~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~--~~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G 226 (311)
..+|.+.++.|+++.++=.......-.+.++.+..+++.+.. ...+....+.+....+..++...+-. |
T Consensus 18 ~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~G---------G 88 (121)
T PF02310_consen 18 LYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVG---------G 88 (121)
T ss_dssp HHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEE---------E
T ss_pred HHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEE---------C
Confidence 445566677788888663322234445667778888877654 22234444444443333334333322 2
Q ss_pred H-HHHHHH-HHHHcCCCCCEEEEccC
Q 021570 227 Y-ETTGPE-IWEDTRGKVDIFIGGIG 250 (311)
Q Consensus 227 ~-~t~a~E-i~~Ql~~~pD~vv~pvG 250 (311)
. .|...| +++... ..|+++..=|
T Consensus 89 ~~~t~~~~~~l~~~~-~~D~vv~Geg 113 (121)
T PF02310_consen 89 PHATADPEEILREYP-GIDYVVRGEG 113 (121)
T ss_dssp SSSGHHHHHHHHHHH-TSEEEEEETT
T ss_pred CchhcChHHHhccCc-CcceecCCCh
Confidence 1 233333 343311 3788777655
No 398
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=46.84 E-value=1.7e+02 Score=25.96 Aligned_cols=52 Identities=25% Similarity=0.468 Sum_probs=37.3
Q ss_pred cCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCE
Q 021570 129 KGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAE 184 (311)
Q Consensus 129 ~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~ 184 (311)
.+.+.+|+..+|...+|..|.+++..++..|.+++++.+.. +...++.+|++
T Consensus 139 ~~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~----~~~~~~~~g~~ 190 (309)
T cd05289 139 LGGLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA----NADFLRSLGAD 190 (309)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch----hHHHHHHcCCC
Confidence 34466775556666679999999999999999977665432 45556778863
No 399
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=46.81 E-value=1.1e+02 Score=24.89 Aligned_cols=52 Identities=17% Similarity=0.298 Sum_probs=36.6
Q ss_pred HHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHH
Q 021570 148 GIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAE 202 (311)
Q Consensus 148 g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~ 202 (311)
|..+|-.....|++++|. ...-+.-...++.+|.+|+..++. +.+++++...
T Consensus 54 G~~~a~~l~~~gvdvvi~--~~iG~~a~~~l~~~GIkv~~~~~~-~V~e~i~~~~ 105 (121)
T COG1433 54 GIRIAELLVDEGVDVVIA--SNIGPNAYNALKAAGIKVYVAPGG-TVEEAIKAFL 105 (121)
T ss_pred hHHHHHHHHHcCCCEEEE--CccCHHHHHHHHHcCcEEEecCCC-CHHHHHHHHh
Confidence 456666777777777765 345566678889999999998874 3666665554
No 400
>PRK09275 aspartate aminotransferase; Provisional
Probab=46.81 E-value=2.6e+02 Score=28.55 Aligned_cols=114 Identities=13% Similarity=0.045 Sum_probs=57.7
Q ss_pred CCCCCchhhHHHHHHHHHHHHcC-CCCC-CCceEEeeCcChHHHHHHHHHH----HcCCeEEEEECCCCCHHHH--HHHH
Q 021570 108 MEPCCSVKDRIGFSMIADAEQKG-LITP-GKSILVEPTSGNTGIGLAFIAA----SKGYKLILTMPASMSLERR--VLLK 179 (311)
Q Consensus 108 ~nPtGS~KdRga~~~v~~A~~~G-~~~~-g~~~vv~aSsGN~g~AlA~~aa----~~Gi~~~vv~p~~~~~~k~--~~l~ 179 (311)
-.|.|-...|-+...-....+.+ ...+ +...|+...++..|..++..+- .++=.-.|++|.-.-..-. ..+.
T Consensus 131 ~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~l~ 210 (527)
T PRK09275 131 PVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCYIFDSLKENGLLKAGDKIALMTPIFTPYLEIPELP 210 (527)
T ss_pred CCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhhhhcCCCCCEEEEeCCChHHHHHHHHHc
Confidence 34578888888776633333322 2222 2236888888888888887752 2332234444443322223 3344
Q ss_pred hcCCEEEEECCC--CChHHHHHHHHHHHHhCCCceeeCCCCCCc
Q 021570 180 AFGAELVLTDSA--KGMKGAVQKAEEILNSTPNAYMLQQFDNPA 221 (311)
Q Consensus 180 ~~GA~V~~v~~~--~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~ 221 (311)
.+|++++.++.+ .++.--.+...+........++++.-+||.
T Consensus 211 g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~~tkai~l~nP~NPT 254 (527)
T PRK09275 211 RYDLEVVHINADEENEWQYPDSELEKLRDPSIKALFLVNPSNPP 254 (527)
T ss_pred CCCeEEEEeecCcccCCCCCHHHHHhhcCCCCCEEEEeCCcCCc
Confidence 557777777532 112211222233333333566665445554
No 401
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=46.76 E-value=1.6e+02 Score=25.31 Aligned_cols=55 Identities=15% Similarity=0.165 Sum_probs=38.0
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHH--HHHHHHhcCCEEEEECCC
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLE--RRVLLKAFGAELVLTDSA 191 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~--k~~~l~~~GA~V~~v~~~ 191 (311)
+.+|++.+|..|.+++......|.+++++...+.... ....+...+.++..+..+
T Consensus 8 ~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 64 (249)
T PRK12825 8 VALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEALGRRAQAVQAD 64 (249)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCceEEEECC
Confidence 6788999999999999999999999877665443221 223344556666655544
No 402
>PRK07326 short chain dehydrogenase; Provisional
Probab=46.72 E-value=1.3e+02 Score=25.98 Aligned_cols=31 Identities=29% Similarity=0.413 Sum_probs=26.6
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEE
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTM 166 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~ 166 (311)
...++++.+|..|.+++......|.+++++.
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~ 37 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITA 37 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEee
Confidence 3678888999999999999988999977765
No 403
>PRK07063 short chain dehydrogenase; Provisional
Probab=46.69 E-value=1.3e+02 Score=26.61 Aligned_cols=56 Identities=18% Similarity=0.152 Sum_probs=35.7
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHh--cCCEEEEECCC
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMS-LERRVLLKA--FGAELVLTDSA 191 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~-~~k~~~l~~--~GA~V~~v~~~ 191 (311)
+..+|++.+|--|.++|..-...|.+++++-..... ......++. .+.++..+..+
T Consensus 8 k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D 66 (260)
T PRK07063 8 KVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPAD 66 (260)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEcc
Confidence 367888899999999999999999987666432111 111223333 46666555443
No 404
>PRK09242 tropinone reductase; Provisional
Probab=46.64 E-value=1.2e+02 Score=26.74 Aligned_cols=56 Identities=16% Similarity=0.131 Sum_probs=36.8
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHH-HHHHHHhc--CCEEEEECCC
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLE-RRVLLKAF--GAELVLTDSA 191 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~-k~~~l~~~--GA~V~~v~~~ 191 (311)
+..+|++.+|.-|.+++......|.+++++........ ....++.. +.++..+..|
T Consensus 10 k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D 68 (257)
T PRK09242 10 QTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAAD 68 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECC
Confidence 36788889999999999999999998766654321111 12233333 6677766554
No 405
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=46.61 E-value=2.5e+02 Score=27.91 Aligned_cols=46 Identities=7% Similarity=0.036 Sum_probs=29.5
Q ss_pred HHHHHHHcCCCCCEEEEccCh-hhHHHHHHHHHHhcCCCCEEEEEeCC
Q 021570 231 GPEIWEDTRGKVDIFIGGIGT-GGTISGAGRYLKEKNPNIKVIIFVLF 277 (311)
Q Consensus 231 a~Ei~~Ql~~~pD~vv~pvG~-Gg~~~Gi~~~lk~~~p~~~iigVe~~ 277 (311)
..||.++++ -|=.+|+.... +.+++.+..++....+++++.||--.
T Consensus 106 ~adiA~~l~-~pviLV~~~~~~~~~~a~l~~~~~~~~~~i~i~GvI~N 152 (451)
T PRK01077 106 TADIAKLLG-APVVLVVDASGMAQSAAALVLGFATFDPDVRIAGVILN 152 (451)
T ss_pred HHHHHHHhC-CCEEEEECCchHHHHHHHHHHHHHHhCCCCCEEEEEEE
Confidence 458888885 45555555544 66777888887776556666665433
No 406
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=46.55 E-value=1.7e+02 Score=28.66 Aligned_cols=99 Identities=18% Similarity=0.190 Sum_probs=48.0
Q ss_pred eEEEEECCCCCHHHHHHHHhcCCE-E-EEECCCCChHHHHHHHHHHHHhCCCceeeCCCCCCcchHhhHHHHHHHHHHHc
Q 021570 161 KLILTMPASMSLERRVLLKAFGAE-L-VLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEIWEDT 238 (311)
Q Consensus 161 ~~~vv~p~~~~~~k~~~l~~~GA~-V-~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~t~a~Ei~~Ql 238 (311)
+..|+.-.+.-..-...+..+|.+ + +++++...-.+-.+...+..++.+-.+.+...-.|+-.. ....-+.|.+++.
T Consensus 7 p~~i~fG~g~l~~l~~~~~~~g~~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~-~~v~~~~~~~~~~ 85 (377)
T COG1454 7 PTEILFGRGSLKELGEEVKRLGAKRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEPEPTI-ETVEAGAEVAREF 85 (377)
T ss_pred CceEEecCChHHHHHHHHHhcCCCceEEEECCccccchhHHHHHHHHHhcCCeEEEecCCCCCCCH-HHHHHHHHHHHhc
Confidence 334444445445555566666643 3 333332111223444444444442123332222222221 3345567888776
Q ss_pred CCCCCEEEEccChhhHHHHHHHHHHh
Q 021570 239 RGKVDIFIGGIGTGGTISGAGRYLKE 264 (311)
Q Consensus 239 ~~~pD~vv~pvG~Gg~~~Gi~~~lk~ 264 (311)
+||.| +++|+|+.+ -++|++.-
T Consensus 86 --~~D~i-IalGGGS~~-D~AK~i~~ 107 (377)
T COG1454 86 --GPDTI-IALGGGSVI-DAAKAIAL 107 (377)
T ss_pred --CCCEE-EEeCCccHH-HHHHHHHH
Confidence 48866 678887765 56666543
No 407
>PRK07062 short chain dehydrogenase; Provisional
Probab=46.51 E-value=1.5e+02 Score=26.23 Aligned_cols=33 Identities=12% Similarity=0.142 Sum_probs=27.7
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECC
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPA 168 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~ 168 (311)
+..+|++.+|.-|.++|......|.+++++...
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~ 41 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGASVAICGRD 41 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 467888999999999999999999997766543
No 408
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=46.46 E-value=64 Score=31.00 Aligned_cols=52 Identities=23% Similarity=0.239 Sum_probs=35.6
Q ss_pred CCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEE
Q 021570 133 TPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVL 187 (311)
Q Consensus 133 ~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~ 187 (311)
.+|+ +|+...+|..|.+++..|+.+|.+++++.+. +..+...++.+|++.+.
T Consensus 177 ~~g~-~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~--~~~~~~~a~~lGa~~~i 228 (375)
T PLN02178 177 ESGK-RLGVNGLGGLGHIAVKIGKAFGLRVTVISRS--SEKEREAIDRLGADSFL 228 (375)
T ss_pred CCCC-EEEEEcccHHHHHHHHHHHHcCCeEEEEeCC--hHHhHHHHHhCCCcEEE
Confidence 4564 4555567999999999999999985554332 23345666788986543
No 409
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=46.42 E-value=84 Score=31.22 Aligned_cols=76 Identities=24% Similarity=0.111 Sum_probs=49.7
Q ss_pred CchhhHHHHHHHHH-HHHcCC---CC---CCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCC--------------
Q 021570 112 CSVKDRIGFSMIAD-AEQKGL---IT---PGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASM-------------- 170 (311)
Q Consensus 112 GS~KdRga~~~v~~-A~~~G~---~~---~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~-------------- 170 (311)
++..+|.....+.. +.+.+. .. .....|+.-.+|-.|.+.|.++++.|.+++||-....
T Consensus 112 ~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~ 191 (471)
T PRK12810 112 GPVTIKNIERYIIDKAFEEGWVKPDPPVKRTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKL 191 (471)
T ss_pred CCccHHHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccC
Confidence 45566666555543 233331 10 1124688899999999999999999999999864321
Q ss_pred C----HHHHHHHHhcCCEEEE
Q 021570 171 S----LERRVLLKAFGAELVL 187 (311)
Q Consensus 171 ~----~~k~~~l~~~GA~V~~ 187 (311)
+ .....++..+|.+++.
T Consensus 192 ~~~~~~~~~~~~~~~gv~~~~ 212 (471)
T PRK12810 192 EKEVIDRRIELMEAEGIEFRT 212 (471)
T ss_pred CHHHHHHHHHHHHhCCcEEEe
Confidence 1 1234567888998864
No 410
>COG0285 FolC Folylpolyglutamate synthase [Coenzyme metabolism]
Probab=46.37 E-value=1.2e+02 Score=30.27 Aligned_cols=96 Identities=21% Similarity=0.234 Sum_probs=57.2
Q ss_pred ChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCCCCCCcchH
Q 021570 145 GNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPANPK 224 (311)
Q Consensus 145 GN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~ 224 (311)
|.++.=+...-...|+++-+|.+...-..+ ++++..| + .++... +.+++++..+..... . +..+..+|
T Consensus 56 GSt~afl~siL~~aG~~VG~yTSPHL~~~~-ERI~ing-~--~Isd~~-~~~~~~~ve~~~~~~-~------~~~~T~FE 123 (427)
T COG0285 56 GSTCAFLESILREAGYKVGVYTSPHLLSFN-ERIRING-E--PISDEE-LAAAFERVEEAAGSL-D------LISLTYFE 123 (427)
T ss_pred hhHHHHHHHHHHHcCCCceEECCCccCccc-eEEEECC-E--ECCHHH-HHHHHHHHHHHhccc-c------cCCCcHHH
Confidence 677777777778899999999866543322 3333333 1 222111 334444333333222 1 34455664
Q ss_pred hhHHHHHHHHHHHcCCCCCEEEEccChhhHH
Q 021570 225 IHYETTGPEIWEDTRGKVDIFIGGIGTGGTI 255 (311)
Q Consensus 225 ~G~~t~a~Ei~~Ql~~~pD~vv~pvG~Gg~~ 255 (311)
--.-+++-.+.|. ++|++|+=||=||-+
T Consensus 124 -~~Ta~Af~~F~~~--~vD~aIlEVGLGGRl 151 (427)
T COG0285 124 -VLTAMAFLYFAEA--KVDVAILEVGLGGRL 151 (427)
T ss_pred -HHHHHHHHHHHhC--CCCEEEEeccccccc
Confidence 5566778888886 389999999888754
No 411
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=46.29 E-value=1.6e+02 Score=26.21 Aligned_cols=67 Identities=10% Similarity=0.105 Sum_probs=40.4
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCH-H-HHHHHH-hcCCEEEEECCCCChHHHHHHHH
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSL-E-RRVLLK-AFGAELVLTDSAKGMKGAVQKAE 202 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~-~-k~~~l~-~~GA~V~~v~~~~~~~~a~~~a~ 202 (311)
+..+|++.++.-|.++|..-...|.+++++...+... . ....++ ..|.++..+..|-.-.+.++.+.
T Consensus 9 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 78 (260)
T PRK08416 9 KTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELF 78 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHH
Confidence 4678888999999999999999999977664332211 1 112232 35766665554432233444433
No 412
>PRK12827 short chain dehydrogenase; Provisional
Probab=46.25 E-value=1.7e+02 Score=25.30 Aligned_cols=67 Identities=18% Similarity=0.121 Sum_probs=42.6
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCC-CCHHHH----HHHHhcCCEEEEECCCCChHHHHHHHHH
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPAS-MSLERR----VLLKAFGAELVLTDSAKGMKGAVQKAEE 203 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~-~~~~k~----~~l~~~GA~V~~v~~~~~~~~a~~~a~~ 203 (311)
..+|++.+|-.|.++|......|.+++++.... ....+. ..+...|.++..+..+..-.+.++.+.+
T Consensus 8 ~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 79 (249)
T PRK12827 8 RVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALD 79 (249)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 578889999999999999999999877754321 122222 3345567777666555322344444433
No 413
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=46.24 E-value=1.5e+02 Score=25.53 Aligned_cols=64 Identities=27% Similarity=0.244 Sum_probs=40.5
Q ss_pred EEeeCcChHHHHHHHHHHHcCCeEEEEECCCCC--HHHHHHHHhcCCEEEEECCCCChHHHHHHHH
Q 021570 139 LVEPTSGNTGIGLAFIAASKGYKLILTMPASMS--LERRVLLKAFGAELVLTDSAKGMKGAVQKAE 202 (311)
Q Consensus 139 vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~--~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~ 202 (311)
+|++++|-.|..+|......|.+++++.....+ ......++..|+++..+..+-.-.+.++.+.
T Consensus 2 lItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 67 (239)
T TIGR01830 2 LVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAYGVKALGVVCDVSDREDVKAVV 67 (239)
T ss_pred EEECCCcHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHH
Confidence 678889999999999988899987666543211 1223445667877766554432233444443
No 414
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=46.22 E-value=59 Score=32.29 Aligned_cols=46 Identities=20% Similarity=0.162 Sum_probs=32.4
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEE
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAEL 185 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V 185 (311)
++++....|+-|..+|..++.+|.+++++=. .+.+.......|.++
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~---dp~ra~~A~~~G~~v 258 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEV---DPICALQAAMDGFRV 258 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcC---CchhhHHHHhcCCEe
Confidence 6788888999999999999999998655422 233333444446553
No 415
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=46.21 E-value=1.4e+02 Score=28.54 Aligned_cols=61 Identities=25% Similarity=0.299 Sum_probs=40.9
Q ss_pred HcCCCCCCCceEEeeCcC--hHHHHHHHHHHHcCCeEEEEECCCC--CHHHHHH----HHhcCCEEEEECC
Q 021570 128 QKGLITPGKSILVEPTSG--NTGIGLAFIAASKGYKLILTMPASM--SLERRVL----LKAFGAELVLTDS 190 (311)
Q Consensus 128 ~~G~~~~g~~~vv~aSsG--N~g~AlA~~aa~~Gi~~~vv~p~~~--~~~k~~~----l~~~GA~V~~v~~ 190 (311)
+.|.+. | .+|+-...+ |.+.+++..++.+|++++++.|+.. ++..+.. .+..|.++..++.
T Consensus 149 ~~g~l~-g-~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d 217 (331)
T PRK02102 149 HFGPLK-G-LKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITED 217 (331)
T ss_pred HhCCCC-C-CEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcC
Confidence 345443 2 345444443 8999999999999999999999863 3333332 3457888776653
No 416
>PRK05650 short chain dehydrogenase; Provisional
Probab=46.07 E-value=1.2e+02 Score=27.11 Aligned_cols=55 Identities=18% Similarity=0.259 Sum_probs=37.8
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhcCCEEEEECCC
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMS-LERRVLLKAFGAELVLTDSA 191 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~-~~k~~~l~~~GA~V~~v~~~ 191 (311)
..+|++.+|.-|.+++..-...|.+++++...... ......++..|.++..+..+
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D 57 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCD 57 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcc
Confidence 35888999999999999999999997776543211 22233455667777665544
No 417
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=45.99 E-value=1.1e+02 Score=26.52 Aligned_cols=66 Identities=15% Similarity=0.138 Sum_probs=40.3
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCH--HHHHHHHhcCCEEEEECCCCChHHHHHHHH
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSL--ERRVLLKAFGAELVLTDSAKGMKGAVQKAE 202 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~--~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~ 202 (311)
..+|++.+|..|..+|......|.+++++.-.+... .....+...+.++..+..+..-.+.++.+.
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 69 (242)
T TIGR01829 2 IALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAV 69 (242)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHH
Confidence 458888999999999999999999887765422111 112234445666665554432233444443
No 418
>PRK12747 short chain dehydrogenase; Provisional
Probab=45.90 E-value=1e+02 Score=27.17 Aligned_cols=55 Identities=18% Similarity=0.126 Sum_probs=36.5
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCC--CHHHHHHHHhcCCEEEEECC
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASM--SLERRVLLKAFGAELVLTDS 190 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~--~~~k~~~l~~~GA~V~~v~~ 190 (311)
+..+|++.+|--|.++|..-+..|.++++...... .......++..|.++..+..
T Consensus 5 k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (252)
T PRK12747 5 KVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGA 61 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhcCCceEEEec
Confidence 46789999999999999999999998777532221 11223345555666654443
No 419
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=45.88 E-value=1.2e+02 Score=22.41 Aligned_cols=49 Identities=27% Similarity=0.310 Sum_probs=34.6
Q ss_pred EEeeCcChHHHHHHHHHHHcC---CeEEEEECCCCCHHHHHHH-HhcCCEEEEEC
Q 021570 139 LVEPTSGNTGIGLAFIAASKG---YKLILTMPASMSLERRVLL-KAFGAELVLTD 189 (311)
Q Consensus 139 vv~aSsGN~g~AlA~~aa~~G---i~~~vv~p~~~~~~k~~~l-~~~GA~V~~v~ 189 (311)
|..-.+||.|.+++......| .++.++... .+++...+ +.+|.++...+
T Consensus 2 I~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r--~~~~~~~~~~~~~~~~~~~~ 54 (96)
T PF03807_consen 2 IGIIGAGNMGSALARGLLASGIKPHEVIIVSSR--SPEKAAELAKEYGVQATADD 54 (96)
T ss_dssp EEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES--SHHHHHHHHHHCTTEEESEE
T ss_pred EEEECCCHHHHHHHHHHHHCCCCceeEEeeccC--cHHHHHHHHHhhccccccCC
Confidence 334489999999999999999 777765433 35555554 67787766543
No 420
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=45.79 E-value=2.1e+02 Score=25.03 Aligned_cols=150 Identities=13% Similarity=0.104 Sum_probs=77.6
Q ss_pred HHHHHHHHHcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCC---------------C-----HHHHHHHH
Q 021570 120 FSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASM---------------S-----LERRVLLK 179 (311)
Q Consensus 120 ~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~---------------~-----~~k~~~l~ 179 (311)
...+..+.+++. ..|+...+......++..+...|++++.+..... + ..-...+.
T Consensus 56 ~~~~~~l~~~~v-----~~iig~~~~~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (298)
T cd06268 56 AAAARELVDDGV-----DAVIGPLSSGVALAAAPVAEEAGVPLISPGATSPALTGKGNPYVFRTAPSDAQQAAALADYLA 130 (298)
T ss_pred HHHHHHHHhCCc-----eEEEcCCcchhHHhhHHHHHhCCCcEEccCCCCcccccCCCceEEEcccCcHHHHHHHHHHHH
Confidence 344455556664 4566555555556777888889988765532110 0 11123344
Q ss_pred hcC--CEEEEECCCCChHHHH-HHHHHHHHhCCCceeeCC-CCCCcchHhhHHHHHHHHHHHcCCCCCEEEEccChhhHH
Q 021570 180 AFG--AELVLTDSAKGMKGAV-QKAEEILNSTPNAYMLQQ-FDNPANPKIHYETTGPEIWEDTRGKVDIFIGGIGTGGTI 255 (311)
Q Consensus 180 ~~G--A~V~~v~~~~~~~~a~-~~a~~~~~~~~~~~~~~~-~~n~~~~~~G~~t~a~Ei~~Ql~~~pD~vv~pvG~Gg~~ 255 (311)
..| -+|..+..+..+.... +...+..++. +.-.+.. ..+... ..+.....+|.+ ..||.|++. +.+...
T Consensus 131 ~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~-g~~i~~~~~~~~~~--~~~~~~~~~l~~---~~~~~vi~~-~~~~~~ 203 (298)
T cd06268 131 EKGKVKKVAIIYDDYAYGRGLAAAFREALKKL-GGEVVAEETYPPGA--TDFSPLIAKLKA---AGPDAVFLA-GYGGDA 203 (298)
T ss_pred HhcCCCEEEEEEcCCchhHHHHHHHHHHHHHc-CCEEEEEeccCCCC--ccHHHHHHHHHh---cCCCEEEEc-cccchH
Confidence 444 5666665443233222 2223333333 3221111 111111 122333334432 248888776 455777
Q ss_pred HHHHHHHHhcCCCCEEEEEeCCCCch
Q 021570 256 SGAGRYLKEKNPNIKVIIFVLFISKP 281 (311)
Q Consensus 256 ~Gi~~~lk~~~p~~~iigVe~~~s~~ 281 (311)
.++.+.+++...++++++........
T Consensus 204 ~~~~~~~~~~g~~~~~~~~~~~~~~~ 229 (298)
T cd06268 204 ALFLKQAREAGLKVPIVGGDGAAAPA 229 (298)
T ss_pred HHHHHHHHHcCCCCcEEecCccCCHH
Confidence 88999999877678898887765543
No 421
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=45.67 E-value=1.1e+02 Score=28.58 Aligned_cols=86 Identities=16% Similarity=0.137 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhCCCc--eeeC-CCCCCcch--HhhHHHHHHHHHHHcCC-CCCEEEEccChhhHHHHHHHHHHhcCCCC
Q 021570 196 GAVQKAEEILNSTPNA--YMLQ-QFDNPANP--KIHYETTGPEIWEDTRG-KVDIFIGGIGTGGTISGAGRYLKEKNPNI 269 (311)
Q Consensus 196 ~a~~~a~~~~~~~~~~--~~~~-~~~n~~~~--~~G~~t~a~Ei~~Ql~~-~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~ 269 (311)
+.+...+++.++.|+. +|+. .-+-|+.. .+-...-..||++.+.. .++.+|++|-|.++++ ...+++.+ ++
T Consensus 16 GGLsVlrei~~~LP~e~~iY~~D~a~~PYG~ks~e~I~~~~~~i~~~l~~~~ik~lVIACNTASa~a--l~~LR~~~-~i 92 (269)
T COG0796 16 GGLSVLREIRRQLPDEDIIYVGDTARFPYGEKSEEEIRERTLEIVDFLLERGIKALVIACNTASAVA--LEDLREKF-DI 92 (269)
T ss_pred CcHHHHHHHHHHCCCCcEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEEecchHHHHH--HHHHHHhC-CC
Confidence 3455666665555543 3332 22223321 11223445566655532 3999999998887765 45667766 67
Q ss_pred EEEEEeCCCCchhhh
Q 021570 270 KVIIFVLFISKPYLA 284 (311)
Q Consensus 270 ~iigVe~~~s~~~~~ 284 (311)
.|+||.|.-.+....
T Consensus 93 PVvGviPaik~A~~~ 107 (269)
T COG0796 93 PVVGVIPAIKPAVAL 107 (269)
T ss_pred CEEEeccchHHHHHh
Confidence 799999876655543
No 422
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=45.60 E-value=2e+02 Score=26.63 Aligned_cols=54 Identities=22% Similarity=0.415 Sum_probs=37.8
Q ss_pred cCCCCCCCceEEeeCcChHHHHHHHHHHHcC-CeEEEEECCCCCHHHHHHHHhcCCEEE
Q 021570 129 KGLITPGKSILVEPTSGNTGIGLAFIAASKG-YKLILTMPASMSLERRVLLKAFGAELV 186 (311)
Q Consensus 129 ~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~G-i~~~vv~p~~~~~~k~~~l~~~GA~V~ 186 (311)
...+.+|...+|. ..|..|.+++..|+.+| .++++ + +.+..|...++.+|++-+
T Consensus 161 ~~~~~~g~~vlI~-g~g~~g~~~~~~a~~~G~~~v~~-~--~~~~~~~~~~~~~g~~~~ 215 (345)
T cd08286 161 NGKVKPGDTVAIV-GAGPVGLAALLTAQLYSPSKIIM-V--DLDDNRLEVAKKLGATHT 215 (345)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEE-E--cCCHHHHHHHHHhCCCce
Confidence 3445666566665 56999999999999999 55444 3 335677778888998533
No 423
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=45.51 E-value=2.9e+02 Score=26.64 Aligned_cols=104 Identities=18% Similarity=0.126 Sum_probs=60.2
Q ss_pred EECCCCCHHHHHHHHhcCCEEEEECCCC--------Ch-HHHHHHHHHHHHhCCCceeeCCCCCCcchHhhHHHHHHHHH
Q 021570 165 TMPASMSLERRVLLKAFGAELVLTDSAK--------GM-KGAVQKAEEILNSTPNAYMLQQFDNPANPKIHYETTGPEIW 235 (311)
Q Consensus 165 v~p~~~~~~k~~~l~~~GA~V~~v~~~~--------~~-~~a~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~t~a~Ei~ 235 (311)
+.|.. ...++...-.+||+.+.++... .| .+-++++.+++.+.+..+|+--. .........+ ..+.+
T Consensus 10 l~pag-~l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N--~~~~~~~~~~-~~~~l 85 (347)
T COG0826 10 LAPAG-NLEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVN--TLLHNDELET-LERYL 85 (347)
T ss_pred ecCCC-CHHHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEec--cccccchhhH-HHHHH
Confidence 33443 3455666667899999888541 01 23367777777777554665432 2222123333 23444
Q ss_pred HHcC-CCCCEEEEccChhhHHHHHHHHHHhcCCCCEEEE-EeCCC
Q 021570 236 EDTR-GKVDIFIGGIGTGGTISGAGRYLKEKNPNIKVII-FVLFI 278 (311)
Q Consensus 236 ~Ql~-~~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iig-Ve~~~ 278 (311)
+++. -.+|+|+++ =-|+...+++..|+.++++ +|..-
T Consensus 86 ~~l~e~GvDaviv~------Dpg~i~l~~e~~p~l~ih~S~q~~v 124 (347)
T COG0826 86 DRLVELGVDAVIVA------DPGLIMLARERGPDLPIHVSTQANV 124 (347)
T ss_pred HHHHHcCCCEEEEc------CHHHHHHHHHhCCCCcEEEeeeEec
Confidence 4442 249999987 3577777888888877664 44433
No 424
>PRK08339 short chain dehydrogenase; Provisional
Probab=45.38 E-value=90 Score=28.00 Aligned_cols=31 Identities=29% Similarity=0.386 Sum_probs=26.6
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEE
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTM 166 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~ 166 (311)
+..+|++.+|.-|.++|......|.+++++-
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~V~~~~ 39 (263)
T PRK08339 9 KLAFTTASSKGIGFGVARVLARAGADVILLS 39 (263)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEe
Confidence 3568889999999999999999999877664
No 425
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=45.07 E-value=1.2e+02 Score=28.51 Aligned_cols=81 Identities=17% Similarity=0.117 Sum_probs=43.0
Q ss_pred eEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCC--hH-HHHHHHHHHHHhCCCceee
Q 021570 138 ILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKG--MK-GAVQKAEEILNSTPNAYML 214 (311)
Q Consensus 138 ~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~--~~-~a~~~a~~~~~~~~~~~~~ 214 (311)
.|+..+++..+..++..+- .+-.-.|+++.-.-..-....+..|++++.++.+.+ ++ +.++.+. ...+....++
T Consensus 78 ~i~it~G~~~~l~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~--~~~~~k~v~l 154 (351)
T PRK14807 78 NIFVGNGSDEIIHLIMLAF-INKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLKEDYTYDVGSFIKVI--EKYQPKLVFL 154 (351)
T ss_pred cEEEecCHHHHHHHHHHHh-cCCCCEEEEeCCChHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHh--hccCCCEEEE
Confidence 4666666677766665543 222234555543334455567889999998875432 11 2222221 1123456776
Q ss_pred CCCCCCc
Q 021570 215 QQFDNPA 221 (311)
Q Consensus 215 ~~~~n~~ 221 (311)
...+||.
T Consensus 155 ~~p~NPt 161 (351)
T PRK14807 155 CNPNNPT 161 (351)
T ss_pred eCCCCCC
Confidence 6545554
No 426
>PRK07324 transaminase; Validated
Probab=45.02 E-value=1.2e+02 Score=29.01 Aligned_cols=104 Identities=10% Similarity=0.059 Sum_probs=53.3
Q ss_pred CCCchhhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEEC
Q 021570 110 PCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTD 189 (311)
Q Consensus 110 PtGS~KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~ 189 (311)
+.|.-..|-+...... + +.+ ..|+..+++..|..++..+- .+-.-.|+++...-..-....+.+|++++.++
T Consensus 61 ~~G~~~lr~~ia~~~~----~-~~~--~~vi~t~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~ 132 (373)
T PRK07324 61 IEGSPEFKEAVASLYQ----N-VKP--ENILQTNGATGANFLVLYAL-VEPGDHVISVYPTYQQLYDIPESLGAEVDYWQ 132 (373)
T ss_pred CCCCHHHHHHHHHHhc----C-CCh--hhEEEcCChHHHHHHHHHHh-CCCCCEEEEcCCCchhHHHHHHHcCCEEEEEe
Confidence 3566666655443321 1 222 34666677777777766554 33223455554333444567788999999887
Q ss_pred CCC--ChHHHHHHHHHHHHhCCCceeeCCCCCCc
Q 021570 190 SAK--GMKGAVQKAEEILNSTPNAYMLQQFDNPA 221 (311)
Q Consensus 190 ~~~--~~~~a~~~a~~~~~~~~~~~~~~~~~n~~ 221 (311)
-+. ++.--.+...+....+...++++..+||.
T Consensus 133 ~~~~~~~~~d~~~l~~~~~~~~kli~i~~p~NPt 166 (373)
T PRK07324 133 LKEENGWLPDLDELRRLVRPNTKLICINNANNPT 166 (373)
T ss_pred cccccCCCCCHHHHHHhCCCCCcEEEEeCCCCCC
Confidence 532 11101122222222333556666555654
No 427
>PRK09414 glutamate dehydrogenase; Provisional
Probab=44.90 E-value=81 Score=31.53 Aligned_cols=53 Identities=15% Similarity=-0.062 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEEC
Q 021570 115 KDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMP 167 (311)
Q Consensus 115 KdRga~~~v~~A~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p 167 (311)
=-||..+.+..+.+.........+|+.-..||-|..+|.....+|.+++.+..
T Consensus 211 Tg~Gv~~~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsD 263 (445)
T PRK09414 211 TGYGLVYFAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSD 263 (445)
T ss_pred ccHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence 35788888877765543343347899999999999999999999988887754
No 428
>PRK07775 short chain dehydrogenase; Provisional
Probab=44.66 E-value=1.7e+02 Score=26.26 Aligned_cols=65 Identities=22% Similarity=0.136 Sum_probs=40.8
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCH-HHHHHHHhcCCEEEEECCCCChHHHHHHH
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSL-ERRVLLKAFGAELVLTDSAKGMKGAVQKA 201 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~-~k~~~l~~~GA~V~~v~~~~~~~~a~~~a 201 (311)
..+|++.+|-.|.+++......|.+++++....... .-...++..|.++..+..+-.-.+.+..+
T Consensus 12 ~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 77 (274)
T PRK07775 12 PALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSF 77 (274)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHH
Confidence 568888899999999999999999876665322111 11223555677877655543223334333
No 429
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=44.53 E-value=1.4e+02 Score=26.02 Aligned_cols=33 Identities=24% Similarity=0.251 Sum_probs=28.2
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECC
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPA 168 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~ 168 (311)
+..+|++.+|..|.++|......|.+++++...
T Consensus 9 k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~ 41 (252)
T PRK08220 9 KTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQA 41 (252)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEecc
Confidence 367888899999999999999999998887644
No 430
>PRK06924 short chain dehydrogenase; Provisional
Probab=44.40 E-value=1.6e+02 Score=25.76 Aligned_cols=54 Identities=19% Similarity=0.212 Sum_probs=34.7
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCC
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSA 191 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~ 191 (311)
..+|++.+|.-|.++|......|.+++++.... ...........+.+++.+..+
T Consensus 3 ~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~D 56 (251)
T PRK06924 3 YVIITGTSQGLGEAIANQLLEKGTHVISISRTE-NKELTKLAEQYNSNLTFHSLD 56 (251)
T ss_pred EEEEecCCchHHHHHHHHHHhcCCEEEEEeCCc-hHHHHHHHhccCCceEEEEec
Confidence 468888999999999999999999877665332 122222223345555444433
No 431
>PRK00654 glgA glycogen synthase; Provisional
Probab=44.28 E-value=1.4e+02 Score=29.51 Aligned_cols=101 Identities=16% Similarity=0.106 Sum_probs=55.2
Q ss_pred eCcChHHHHHHHHHHHcCCeEEEEECCCCCHH-HHHHH----------------HhcCCEEEEECCCCChHHHHHHHHHH
Q 021570 142 PTSGNTGIGLAFIAASKGYKLILTMPASMSLE-RRVLL----------------KAFGAELVLTDSAKGMKGAVQKAEEI 204 (311)
Q Consensus 142 aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~-k~~~l----------------~~~GA~V~~v~~~~~~~~a~~~a~~~ 204 (311)
+.-|.+..+|+-+-++.|.++.|++|.--.-. ..... ..-|.+|++++.+. .
T Consensus 17 GGl~~~v~~L~~~L~~~G~~V~v~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~v~~~~-----------~ 85 (466)
T PRK00654 17 GGLGDVVGALPKALAALGHDVRVLLPGYPAIREKLRDAQVVGRLDLFTVLFGHLEGDGVPVYLIDAPH-----------L 85 (466)
T ss_pred CcHHHHHHHHHHHHHHCCCcEEEEecCCcchhhhhcCceEEEEeeeEEEEEEeEEcCCceEEEEeCHH-----------H
Confidence 45578888899998899999999999732111 00000 11356666665421 0
Q ss_pred HHhCCCceeeCCCCCCcchHhhHHHHHHHHHHHcCCCCCEEEEccChhhHHHH
Q 021570 205 LNSTPNAYMLQQFDNPANPKIHYETTGPEIWEDTRGKVDIFIGGIGTGGTISG 257 (311)
Q Consensus 205 ~~~~~~~~~~~~~~n~~~~~~G~~t~a~Ei~~Ql~~~pD~vv~pvG~Gg~~~G 257 (311)
.. . ..+| ...+|..++ .-....+.|++.+++.+||.|.+=---.+.++.
T Consensus 86 ~~-~-~~~y-~~~d~~~r~-~~f~~~~~~~~~~~~~~pDiiH~h~w~~~~~~~ 134 (466)
T PRK00654 86 FD-R-PSGY-GYPDNGERF-AFFSWAAAEFAEGLDPRPDIVHAHDWHTGLIPA 134 (466)
T ss_pred cC-C-CCCC-CCcChHHHH-HHHHHHHHHHHHhcCCCCceEEECCcHHHHHHH
Confidence 00 1 1111 112233333 134455678888876679988776444444433
No 432
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=44.25 E-value=73 Score=30.16 Aligned_cols=35 Identities=23% Similarity=0.185 Sum_probs=29.1
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCC
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMS 171 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~ 171 (311)
+..+++-.+|.+.|+..+++++|++++++.|+..+
T Consensus 155 ~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~ 189 (311)
T PRK14804 155 QLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAK 189 (311)
T ss_pred EEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCcc
Confidence 44445556899999999999999999999998854
No 433
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=44.18 E-value=2e+02 Score=26.32 Aligned_cols=54 Identities=30% Similarity=0.319 Sum_probs=38.9
Q ss_pred HcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCE
Q 021570 128 QKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAE 184 (311)
Q Consensus 128 ~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~ 184 (311)
+...+.+|+..++. ..|..|.+++..|+.+|++.++++.. +..+...++.+|+.
T Consensus 153 ~~~~~~~g~~vlI~-g~g~vg~~~~~la~~~G~~~v~~~~~--~~~~~~~~~~~g~~ 206 (334)
T cd08234 153 DLLGIKPGDSVLVF-GAGPIGLLLAQLLKLNGASRVTVAEP--NEEKLELAKKLGAT 206 (334)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHhCCe
Confidence 45556677555555 57899999999999999985444433 35677777888886
No 434
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=43.85 E-value=2e+02 Score=25.33 Aligned_cols=31 Identities=19% Similarity=0.159 Sum_probs=26.7
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEEC
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMP 167 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p 167 (311)
..+|++.+|.-|.++|..-+..|.+++++-.
T Consensus 4 ~ilItG~~~~IG~~la~~l~~~g~~vi~~~r 34 (259)
T PRK12384 4 VAVVIGGGQTLGAFLCHGLAEEGYRVAVADI 34 (259)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEEC
Confidence 5789999999999999999999998776643
No 435
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=43.62 E-value=1.9e+02 Score=25.05 Aligned_cols=67 Identities=15% Similarity=0.066 Sum_probs=40.3
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHH--HHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLER--RVLLKAFGAELVLTDSAKGMKGAVQKAEE 203 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k--~~~l~~~GA~V~~v~~~~~~~~a~~~a~~ 203 (311)
..+|++.+|.-|.++|..-...|.++++.........+ .......+.++..+..+..-.+.++.+.+
T Consensus 4 ~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 72 (245)
T PRK12824 4 IALVTGAKRGIGSAIARELLNDGYRVIATYFSGNDCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALA 72 (245)
T ss_pred EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHH
Confidence 45788899999999999988889887777644321111 12222345566665544322344444443
No 436
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=43.56 E-value=2.4e+02 Score=25.10 Aligned_cols=55 Identities=24% Similarity=0.392 Sum_probs=39.2
Q ss_pred CCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEE
Q 021570 130 GLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVL 187 (311)
Q Consensus 130 G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~ 187 (311)
..+.++...+|.+.+|..|.+++..++..|.+++++.. +..+...++.+|++.+.
T Consensus 135 ~~~~~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~---~~~~~~~~~~~g~~~~~ 189 (323)
T cd05276 135 GGLKAGETVLIHGGASGVGTAAIQLAKALGARVIATAG---SEEKLEACRALGADVAI 189 (323)
T ss_pred cCCCCCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHcCCCEEE
Confidence 44566666677777889999999999999999655433 34566666777875443
No 437
>PRK08175 aminotransferase; Validated
Probab=43.50 E-value=3e+02 Score=26.28 Aligned_cols=109 Identities=15% Similarity=0.101 Sum_probs=54.1
Q ss_pred CCCchhhHHHHHHHHHHHHcCC-CCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEE
Q 021570 110 PCCSVKDRIGFSMIADAEQKGL-ITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLT 188 (311)
Q Consensus 110 PtGS~KdRga~~~v~~A~~~G~-~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v 188 (311)
+.|....|.+...... ...|. +.+. ..++..++++.|..+...+- ..-.-.|++|.-.-..-....+.+|++++.+
T Consensus 66 ~~G~~~lr~aia~~~~-~~~g~~~~~~-~~i~~t~G~~~~l~~~~~~~-~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v 142 (395)
T PRK08175 66 SRGIPRLRRAISRWYQ-DRYDVDIDPE-SEAIVTIGSKEGLAHLMLAT-LDHGDTVLVPNPSYPIHIYGAVIAGAQVRSV 142 (395)
T ss_pred CCCCHHHHHHHHHHHH-HHhCCCCCCC-CcEEEccCcHHHHHHHHHHh-CCCCCEEEEcCCCCcchHHHHHHcCCeEEEE
Confidence 4566667765554432 23343 2222 24777788888887655433 2222345555543333344456789999887
Q ss_pred CCCCC--hHHHHHHHHHHHHhCCCceeeCCCCCCc
Q 021570 189 DSAKG--MKGAVQKAEEILNSTPNAYMLQQFDNPA 221 (311)
Q Consensus 189 ~~~~~--~~~a~~~a~~~~~~~~~~~~~~~~~n~~ 221 (311)
+.+.. +.+.++.+.+........+++..-+||.
T Consensus 143 ~~~~~~~~~~~l~~~l~~~~~~~~~v~i~~p~NPt 177 (395)
T PRK08175 143 PLVEGVDFFNELERAIRESYPKPKMMILGFPSNPT 177 (395)
T ss_pred ecccCCCcHHHHHHHHhhccCCceEEEEeCCCCCC
Confidence 65421 2333433322111123456655334444
No 438
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=43.48 E-value=86 Score=30.42 Aligned_cols=33 Identities=12% Similarity=0.071 Sum_probs=27.0
Q ss_pred CceEEeeCcChHHHHHHHHHHHcC-------CeEEEEECC
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKG-------YKLILTMPA 168 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~G-------i~~~vv~p~ 168 (311)
+..|..-.+|+||.|+|...+..| -++.++..+
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~ 50 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLE 50 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEec
Confidence 356888899999999999999887 577777654
No 439
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=43.40 E-value=1.5e+02 Score=26.37 Aligned_cols=52 Identities=23% Similarity=0.263 Sum_probs=36.8
Q ss_pred HHcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCe-EEEEECCCCCHHHHHHHHhcC
Q 021570 127 EQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYK-LILTMPASMSLERRVLLKAFG 182 (311)
Q Consensus 127 ~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~-~~vv~p~~~~~~k~~~l~~~G 182 (311)
.+.+.+.+|++.++. ..|..|.++...|+.+|.+ ++++ ..+.++...++.+|
T Consensus 90 ~~~~~~~~g~~vlI~-g~g~vg~~~i~~a~~~g~~~vi~~---~~~~~~~~~~~~~g 142 (277)
T cd08255 90 VRDAEPRLGERVAVV-GLGLVGLLAAQLAKAAGAREVVGV---DPDAARRELAEALG 142 (277)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEE---CCCHHHHHHHHHcC
Confidence 345666777565555 5799999999999999998 4443 23456666777777
No 440
>PLN02477 glutamate dehydrogenase
Probab=43.27 E-value=1.6e+02 Score=29.13 Aligned_cols=51 Identities=20% Similarity=0.091 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHc-CCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEEC
Q 021570 116 DRIGFSMIADAEQK-GLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMP 167 (311)
Q Consensus 116 dRga~~~v~~A~~~-G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p 167 (311)
-||..+.+..+.+. |. .....+|+.-..||-|..+|......|.+++.+..
T Consensus 186 g~Gv~~~~~~~~~~~g~-~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD 237 (410)
T PLN02477 186 GRGVVFATEALLAEHGK-SIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSD 237 (410)
T ss_pred hHHHHHHHHHHHHHcCC-CccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEC
Confidence 47888888777653 43 33346788889999999999999999998886643
No 441
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=43.24 E-value=3e+02 Score=26.24 Aligned_cols=22 Identities=18% Similarity=0.228 Sum_probs=13.3
Q ss_pred HHHHHcC-CCCCEEEEccChhhHH
Q 021570 233 EIWEDTR-GKVDIFIGGIGTGGTI 255 (311)
Q Consensus 233 Ei~~Ql~-~~pD~vv~pvG~Gg~~ 255 (311)
++.+++. .++|. |+++|+|+.+
T Consensus 71 ~~~~~~~~~~~d~-IiaiGGGs~~ 93 (370)
T cd08551 71 AAVAAYREEGCDG-VIAVGGGSVL 93 (370)
T ss_pred HHHHHHHhcCCCE-EEEeCCchHH
Confidence 4444442 24775 6788888765
No 442
>PLN02583 cinnamoyl-CoA reductase
Probab=43.16 E-value=1.5e+02 Score=27.15 Aligned_cols=33 Identities=30% Similarity=0.352 Sum_probs=28.9
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECC
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPA 168 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~ 168 (311)
+..+|++.+|-.|..++......|.+++++...
T Consensus 7 k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~ 39 (297)
T PLN02583 7 KSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQK 39 (297)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 467899999999999999999999999888753
No 443
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=43.13 E-value=2.3e+02 Score=26.69 Aligned_cols=54 Identities=13% Similarity=0.016 Sum_probs=32.7
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCe-EEEEECCCCCHHHHHHHHhcCCEEEEECCC
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYK-LILTMPASMSLERRVLLKAFGAELVLTDSA 191 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~-~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~ 191 (311)
..|+.+.+++.+..++..+- .+-. -.|+++.-.-..-....+.+|++++.++-+
T Consensus 75 ~~I~~~~Gs~e~i~~~~~~~-~~~g~~~vli~~P~y~~y~~~~~~~G~~~~~v~~~ 129 (351)
T PRK01688 75 EQVLVSRGADEGIELLIRAF-CEPGKDAILYCPPTYGMYSVSAETIGVEIRTVPTL 129 (351)
T ss_pred HHEEEcCCHHHHHHHHHHHh-cCCCCCEEEEcCCCHHHHHHHHHHcCCEEEEeecC
Confidence 34777777788777776554 2221 344444333233345677899999988654
No 444
>PLN02494 adenosylhomocysteinase
Probab=43.05 E-value=90 Score=31.50 Aligned_cols=52 Identities=19% Similarity=0.195 Sum_probs=36.6
Q ss_pred CCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEE
Q 021570 130 GLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAEL 185 (311)
Q Consensus 130 G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V 185 (311)
+..-.| ++++....|+-|.++|..++.+|.+++++=. ++.+.......|.++
T Consensus 249 ~i~LaG-KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~---dp~r~~eA~~~G~~v 300 (477)
T PLN02494 249 DVMIAG-KVAVICGYGDVGKGCAAAMKAAGARVIVTEI---DPICALQALMEGYQV 300 (477)
T ss_pred CCccCC-CEEEEECCCHHHHHHHHHHHHCCCEEEEEeC---CchhhHHHHhcCCee
Confidence 333344 7899999999999999999999998555422 334444455567764
No 445
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=43.01 E-value=1.2e+02 Score=26.84 Aligned_cols=31 Identities=26% Similarity=0.276 Sum_probs=24.6
Q ss_pred CceEEeeCc--ChHHHHHHHHHHHcCCeEEEEE
Q 021570 136 KSILVEPTS--GNTGIGLAFIAASKGYKLILTM 166 (311)
Q Consensus 136 ~~~vv~aSs--GN~g~AlA~~aa~~Gi~~~vv~ 166 (311)
+..+|++.+ +.-|.++|...++.|.++++.-
T Consensus 8 k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~ 40 (252)
T PRK06079 8 KKIVVMGVANKRSIAWGCAQAIKDQGATVIYTY 40 (252)
T ss_pred CEEEEeCCCCCCchHHHHHHHHHHCCCEEEEec
Confidence 356777766 6899999999999999977654
No 446
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=42.83 E-value=96 Score=30.88 Aligned_cols=51 Identities=24% Similarity=0.331 Sum_probs=39.7
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCC---------CC---------HHHHHHHHhcCCEEEE
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPAS---------MS---------LERRVLLKAFGAELVL 187 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~---------~~---------~~k~~~l~~~GA~V~~ 187 (311)
+.|+.-.+|-.|.+.|..+++.|.+++|+-... .+ .....+++.+|.+++.
T Consensus 142 ~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~ 210 (467)
T TIGR01318 142 KRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHL 210 (467)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEEC
Confidence 579999999999999999999999988884322 11 1345677889998864
No 447
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=42.72 E-value=2.1e+02 Score=27.59 Aligned_cols=94 Identities=14% Similarity=0.226 Sum_probs=41.2
Q ss_pred EEEEECCCCCHHHHHHHHhcCCEEEEECCCCC--hHHHHHHHHHHHHhCCCcee-eCCC-CCCcchHhhHHHHHHHHHHH
Q 021570 162 LILTMPASMSLERRVLLKAFGAELVLTDSAKG--MKGAVQKAEEILNSTPNAYM-LQQF-DNPANPKIHYETTGPEIWED 237 (311)
Q Consensus 162 ~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~--~~~a~~~a~~~~~~~~~~~~-~~~~-~n~~~~~~G~~t~a~Ei~~Q 237 (311)
..|+.-.+.-..--..++.+|-++.++.+... ..+..++..+..++.+-.+. .+.. .||..- - -.-+.+++++
T Consensus 5 ~~i~fG~g~l~~l~~~~~~~g~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~--~-v~~~~~~~~~ 81 (380)
T cd08185 5 TKIVFGAGKLNELGEEALKPGKKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTT--T-VMEGAALARE 81 (380)
T ss_pred CeEEECcCHHHHHHHHHHhcCCeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHH--H-HHHHHHHHHH
Confidence 33444434333333445556766666554321 12344455544444311122 2222 233321 1 1122344444
Q ss_pred cCCCCCEEEEccChhhHHHHHHHHH
Q 021570 238 TRGKVDIFIGGIGTGGTISGAGRYL 262 (311)
Q Consensus 238 l~~~pD~vv~pvG~Gg~~~Gi~~~l 262 (311)
. ++|.| +++|||+.+ =++|++
T Consensus 82 ~--~~D~I-iavGGGS~i-D~aK~i 102 (380)
T cd08185 82 E--GCDFV-VGLGGGSSM-DTAKAI 102 (380)
T ss_pred c--CCCEE-EEeCCccHH-HHHHHH
Confidence 3 47754 778887765 344443
No 448
>PRK12746 short chain dehydrogenase; Provisional
Probab=42.63 E-value=1.9e+02 Score=25.33 Aligned_cols=56 Identities=20% Similarity=0.208 Sum_probs=36.7
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCH--HHHHHHHhcCCEEEEECCC
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSL--ERRVLLKAFGAELVLTDSA 191 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~--~k~~~l~~~GA~V~~v~~~ 191 (311)
...+|++.+|--|.++|......|.++++....+... .....+...+.++..+..|
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 64 (254)
T PRK12746 7 KVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESNGGKAFLIEAD 64 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcC
Confidence 3678999999999999999999999877764333211 1122334446666555444
No 449
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=42.58 E-value=1.3e+02 Score=28.59 Aligned_cols=80 Identities=11% Similarity=0.028 Sum_probs=42.4
Q ss_pred eEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCC--hH-HHHHHHHHHHHhCCCceee
Q 021570 138 ILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKG--MK-GAVQKAEEILNSTPNAYML 214 (311)
Q Consensus 138 ~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~--~~-~a~~~a~~~~~~~~~~~~~ 214 (311)
.|+..+++..+..++..+- ..-.-.|+++.-.-..-...++.+|++++.++.+.. ++ +.++. ...+....+++
T Consensus 90 ~i~~t~G~~~~l~~~~~~~-~~~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~---~~~~~~~~v~l 165 (371)
T PRK05166 90 RIILGNGSEDLIAVICRAV-LRPGDRVVTLYPSFPLHEDYPTMMGARVERVTVTPDLGFDLDALCA---AVARAPRMLMF 165 (371)
T ss_pred HEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCChHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHH---hhhcCCCEEEE
Confidence 4666666677766555443 222234455544434455677889999998875421 21 22322 22233356666
Q ss_pred CCCCCCc
Q 021570 215 QQFDNPA 221 (311)
Q Consensus 215 ~~~~n~~ 221 (311)
...+||.
T Consensus 166 ~~p~NPt 172 (371)
T PRK05166 166 SNPSNPV 172 (371)
T ss_pred eCCCCCC
Confidence 5445554
No 450
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=42.38 E-value=3.1e+02 Score=26.07 Aligned_cols=109 Identities=10% Similarity=0.039 Sum_probs=55.8
Q ss_pred CCCchhhHHHHHHHHHHHHcCC-CCCCCceEEeeCcChHHHHHHHHHHH-cCCeEEEEECCCCCHHHHHHHHhcCCEEEE
Q 021570 110 PCCSVKDRIGFSMIADAEQKGL-ITPGKSILVEPTSGNTGIGLAFIAAS-KGYKLILTMPASMSLERRVLLKAFGAELVL 187 (311)
Q Consensus 110 PtGS~KdRga~~~v~~A~~~G~-~~~g~~~vv~aSsGN~g~AlA~~aa~-~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~ 187 (311)
+.|....|-+...... ...|. +.+. ..|+..++++.+..++..+-. -| + .|+++.-.-..-...++.+|++++.
T Consensus 67 ~~G~~~lr~aia~~~~-~~~g~~~~~~-~~I~it~Gs~~al~~~~~~l~~~g-d-~Vlv~~P~y~~~~~~~~~~g~~~~~ 142 (388)
T PRK07366 67 FHGTLDFREAAAQWYE-QRFGLAVDPE-TEVLPLIGSQEGTAHLPLAVLNPG-D-FALLLDPGYPSHAGGVYLAGGQIYP 142 (388)
T ss_pred CCCCHHHHHHHHHHHH-HhhCCcCCCc-CeEEECCCcHHHHHHHHHHhCCCC-C-EEEEcCCCCcchHHHHHhcCCEEEE
Confidence 4676677765443322 22353 3332 247777777888777665432 23 2 3444443333335666789999998
Q ss_pred ECCCC--ChHHHHHHHHHHHHhCCCceeeCCCCCCcc
Q 021570 188 TDSAK--GMKGAVQKAEEILNSTPNAYMLQQFDNPAN 222 (311)
Q Consensus 188 v~~~~--~~~~a~~~a~~~~~~~~~~~~~~~~~n~~~ 222 (311)
++-+. .+..-.+...+........+|+...+||..
T Consensus 143 v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~p~NPTG 179 (388)
T PRK07366 143 MPLRAENDFLPVFADIPTEVLAQARLMVLSYPHNPTT 179 (388)
T ss_pred EECCCccCCCCCHHHHHHhhcccceEEEEeCCCCCCC
Confidence 86532 121112222222222345677776666653
No 451
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=42.33 E-value=1.9e+02 Score=25.27 Aligned_cols=32 Identities=28% Similarity=0.280 Sum_probs=26.9
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEEC
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMP 167 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p 167 (311)
+..+|++.+|+.|.+++......|.+++++..
T Consensus 13 k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r 44 (247)
T PRK08945 13 RIILVTGAGDGIGREAALTYARHGATVILLGR 44 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCcEEEEeC
Confidence 46789999999999999998889997766543
No 452
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=42.30 E-value=2e+02 Score=26.82 Aligned_cols=15 Identities=13% Similarity=0.437 Sum_probs=8.0
Q ss_pred HHHHhcCCEEEEECC
Q 021570 176 VLLKAFGAELVLTDS 190 (311)
Q Consensus 176 ~~l~~~GA~V~~v~~ 190 (311)
...+.+|++++.++.
T Consensus 91 ~~~~~~g~~~~~v~~ 105 (356)
T cd06451 91 DMAERYGADVDVVEK 105 (356)
T ss_pred HHHHHhCCCeEEeec
Confidence 344555666665543
No 453
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=42.24 E-value=1.2e+02 Score=29.57 Aligned_cols=28 Identities=21% Similarity=0.135 Sum_probs=23.6
Q ss_pred eCcChHHHHHHHHHHHcCCeEEEEECCC
Q 021570 142 PTSGNTGIGLAFIAASKGYKLILTMPAS 169 (311)
Q Consensus 142 aSsGN~g~AlA~~aa~~Gi~~~vv~p~~ 169 (311)
+.-|.+..+|+.+-+.+|.+++|++|.-
T Consensus 16 GGl~~~~~~L~~aL~~~G~~V~Vi~p~y 43 (476)
T cd03791 16 GGLGDVVGALPKALAKLGHDVRVIMPKY 43 (476)
T ss_pred CcHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 4457888889999899999999999973
No 454
>PRK05872 short chain dehydrogenase; Provisional
Probab=42.20 E-value=1.5e+02 Score=27.06 Aligned_cols=31 Identities=29% Similarity=0.310 Sum_probs=26.4
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEE
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTM 166 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~ 166 (311)
+..+|++.+|.-|.++|...+..|.+++++-
T Consensus 10 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~ 40 (296)
T PRK05872 10 KVVVVTGAARGIGAELARRLHARGAKLALVD 40 (296)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 4678999999999999999999999866654
No 455
>PRK07023 short chain dehydrogenase; Provisional
Probab=42.16 E-value=1.4e+02 Score=26.14 Aligned_cols=51 Identities=20% Similarity=0.135 Sum_probs=35.7
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCC
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSA 191 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~ 191 (311)
+.+|++.+|.-|.++|......|.+++++..... .. .....|.++..+..+
T Consensus 3 ~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~-~~---~~~~~~~~~~~~~~D 53 (243)
T PRK07023 3 RAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRH-PS---LAAAAGERLAEVELD 53 (243)
T ss_pred eEEEecCCcchHHHHHHHHHhCCCEEEEEecCcc-hh---hhhccCCeEEEEEec
Confidence 4688999999999999999999999877654322 11 133456666655444
No 456
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=42.15 E-value=3.2e+02 Score=26.24 Aligned_cols=95 Identities=19% Similarity=0.206 Sum_probs=42.2
Q ss_pred CeEEEEECCCCCHHHHHHHHhcCC-EEEEECCCCChH-HHHHHHHHHHHhCCCcee-eCCC-CCCcchHhhHHHHHHHHH
Q 021570 160 YKLILTMPASMSLERRVLLKAFGA-ELVLTDSAKGMK-GAVQKAEEILNSTPNAYM-LQQF-DNPANPKIHYETTGPEIW 235 (311)
Q Consensus 160 i~~~vv~p~~~~~~k~~~l~~~GA-~V~~v~~~~~~~-~a~~~a~~~~~~~~~~~~-~~~~-~n~~~~~~G~~t~a~Ei~ 235 (311)
.+..|+.-.+.-..--..++.+|. ++.++.+..... +..++..+..++.+-.+. .+.. .||..- . ..++.
T Consensus 5 ~p~~i~~G~g~l~~l~~~l~~~g~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~--~----v~~~~ 78 (377)
T cd08176 5 LPPTNLFGAGAIKEIGDELKNLGFKKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTIT--N----VKDGL 78 (377)
T ss_pred CCCeEEECcCHHHHHHHHHHHhCCCeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHH--H----HHHHH
Confidence 345555544443333345666774 555554332122 234455554444311122 2221 133321 1 23343
Q ss_pred HHcC-CCCCEEEEccChhhHHHHHHHHH
Q 021570 236 EDTR-GKVDIFIGGIGTGGTISGAGRYL 262 (311)
Q Consensus 236 ~Ql~-~~pD~vv~pvG~Gg~~~Gi~~~l 262 (311)
+++. .++|. |+++|||+.+ =++|++
T Consensus 79 ~~~~~~~~D~-IIavGGGS~i-D~aK~i 104 (377)
T cd08176 79 AVFKKEGCDF-IISIGGGSPH-DCAKAI 104 (377)
T ss_pred HHHHhcCCCE-EEEeCCcHHH-HHHHHH
Confidence 3332 24775 5778887764 444444
No 457
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=42.15 E-value=1.9e+02 Score=25.44 Aligned_cols=66 Identities=17% Similarity=0.144 Sum_probs=39.3
Q ss_pred ceEEeeCc--ChHHHHHHHHHHHcCCeEEEEECCCC---------CHH---HHHHHHhcCCEEEEECCCCChHHHHHHHH
Q 021570 137 SILVEPTS--GNTGIGLAFIAASKGYKLILTMPASM---------SLE---RRVLLKAFGAELVLTDSAKGMKGAVQKAE 202 (311)
Q Consensus 137 ~~vv~aSs--GN~g~AlA~~aa~~Gi~~~vv~p~~~---------~~~---k~~~l~~~GA~V~~v~~~~~~~~a~~~a~ 202 (311)
..+|++.+ |.-|.++|..-+..|.+++++..... ... -...+..+|.+++.+..+-.-.+.++.+.
T Consensus 7 ~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 86 (256)
T PRK12748 7 IALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQPYAPNRVF 86 (256)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHH
Confidence 56677766 47999999998899998777653310 111 12334556877777665532233444433
No 458
>PRK06953 short chain dehydrogenase; Provisional
Probab=42.09 E-value=2.2e+02 Score=24.41 Aligned_cols=52 Identities=25% Similarity=0.317 Sum_probs=37.7
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCC
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSA 191 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~ 191 (311)
..++++.+|.-|.++|..-...|.+++++... ..+...++..+.+.+..+-.
T Consensus 3 ~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~---~~~~~~~~~~~~~~~~~D~~ 54 (222)
T PRK06953 3 TVLIVGASRGIGREFVRQYRADGWRVIATARD---AAALAALQALGAEALALDVA 54 (222)
T ss_pred eEEEEcCCCchhHHHHHHHHhCCCEEEEEECC---HHHHHHHHhccceEEEecCC
Confidence 46888899999999999888889987776543 33445555567776666544
No 459
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=42.06 E-value=1.5e+02 Score=27.84 Aligned_cols=81 Identities=19% Similarity=0.111 Sum_probs=45.1
Q ss_pred eEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCCh--H-HHHHHHHHHHHhCCCceee
Q 021570 138 ILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGM--K-GAVQKAEEILNSTPNAYML 214 (311)
Q Consensus 138 ~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~--~-~a~~~a~~~~~~~~~~~~~ 214 (311)
.|+..++++.+..++..+- .+-.-.|++|.-.-..-....+.+|++++.++-+.++ + +.++.+. .......+++
T Consensus 83 ~I~~t~G~~~~i~~~~~~~-~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~~--~~~~~~~v~l 159 (356)
T PRK04870 83 DVLLGNGSDELIQLLALAC-AKPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLTADFTLDLPAMLAAI--AEHRPALVFL 159 (356)
T ss_pred cEEEcCCHHHHHHHHHHHh-cCCCCEEEECCCCHHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHh--hcCCCCEEEE
Confidence 4666676677776665543 2222345566544455566778899999988754221 1 2332222 1223456777
Q ss_pred CCCCCCc
Q 021570 215 QQFDNPA 221 (311)
Q Consensus 215 ~~~~n~~ 221 (311)
...+||.
T Consensus 160 ~~p~NPt 166 (356)
T PRK04870 160 AYPNNPT 166 (356)
T ss_pred cCCCCCC
Confidence 6445654
No 460
>PRK07856 short chain dehydrogenase; Provisional
Probab=41.95 E-value=1.4e+02 Score=26.19 Aligned_cols=32 Identities=19% Similarity=0.281 Sum_probs=27.3
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEEC
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMP 167 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p 167 (311)
+..+|++.+|--|.++|...+..|.+++++..
T Consensus 7 k~~lItGas~gIG~~la~~l~~~g~~v~~~~r 38 (252)
T PRK07856 7 RVVLVTGGTRGIGAGIARAFLAAGATVVVCGR 38 (252)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 46789999999999999999999998777654
No 461
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=41.92 E-value=2.4e+02 Score=24.73 Aligned_cols=52 Identities=23% Similarity=0.223 Sum_probs=34.9
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHH-HhcCCEEEEECCC
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLL-KAFGAELVLTDSA 191 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l-~~~GA~V~~v~~~ 191 (311)
..+|++.+|..|.++|......|.+++++... +.++..+ ...|.++..+..+
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~~D 54 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGHKVIATGRR---QERLQELKDELGDNLYIAQLD 54 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHHhccceEEEEec
Confidence 35788999999999999999999987766432 2333333 2346565554443
No 462
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=41.83 E-value=2.4e+02 Score=24.74 Aligned_cols=54 Identities=17% Similarity=0.137 Sum_probs=38.1
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCC
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSA 191 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~ 191 (311)
+..+|++.+|--|.++|..-...|.++++..... ..+...++..+...+.+|-.
T Consensus 8 k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~--~~~~~~l~~~~~~~~~~Dl~ 61 (255)
T PRK06463 8 KVALITGGTRGIGRAIAEAFLREGAKVAVLYNSA--ENEAKELREKGVFTIKCDVG 61 (255)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCc--HHHHHHHHhCCCeEEEecCC
Confidence 3678888999999999999999999877654332 33444555556666666644
No 463
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=41.23 E-value=2.3e+02 Score=24.87 Aligned_cols=32 Identities=16% Similarity=0.194 Sum_probs=27.3
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEEC
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMP 167 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p 167 (311)
+..+|++++|-.|.++|......|.+++++..
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r 38 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGARVVIADI 38 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEcC
Confidence 36789999999999999999999998777643
No 464
>PRK13984 putative oxidoreductase; Provisional
Probab=41.10 E-value=97 Score=31.84 Aligned_cols=51 Identities=22% Similarity=0.354 Sum_probs=38.2
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCC--------------C----HHHHHHHHhcCCEEEE
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASM--------------S----LERRVLLKAFGAELVL 187 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~--------------~----~~k~~~l~~~GA~V~~ 187 (311)
+.|+...+|-.|.+.|...++.|++++|+=.... + ......++.+|.+++.
T Consensus 284 ~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~ 352 (604)
T PRK13984 284 KKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHL 352 (604)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEEC
Confidence 4566667999999999999999999999843221 1 2345678889988764
No 465
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=41.07 E-value=2.3e+02 Score=28.01 Aligned_cols=55 Identities=18% Similarity=0.029 Sum_probs=38.2
Q ss_pred ceEEeeCcChHHHHHHHHHHH------cCC--eEEEEECCCCCHHHHHHHHhcCCEEEEECCC
Q 021570 137 SILVEPTSGNTGIGLAFIAAS------KGY--KLILTMPASMSLERRVLLKAFGAELVLTDSA 191 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~------~Gi--~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~ 191 (311)
..++..++|..+..+|+.+.. .++ .-.|++|...-......+..+|++++.++-+
T Consensus 79 ~~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~G~~pv~vdvd 141 (438)
T PRK15407 79 RYALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQNGLVPVFVDVE 141 (438)
T ss_pred CeEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecC
Confidence 346777778888877776542 132 2457777766666677778899999988754
No 466
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=41.02 E-value=1.8e+02 Score=25.09 Aligned_cols=61 Identities=16% Similarity=0.163 Sum_probs=39.5
Q ss_pred HHHHHHHcCCCCCCCceEEeeCcChHHH-HHHHHHHHcCCeEEEEECCCC--C----HHHHHHHHhcCCEEE
Q 021570 122 MIADAEQKGLITPGKSILVEPTSGNTGI-GLAFIAASKGYKLILTMPASM--S----LERRVLLKAFGAELV 186 (311)
Q Consensus 122 ~v~~A~~~G~~~~g~~~vv~aSsGN~g~-AlA~~aa~~Gi~~~vv~p~~~--~----~~k~~~l~~~GA~V~ 186 (311)
+.....+.|. ++.++++-..|.+. +.+..|..+|++++|+..... + ..-++.|+..|++|+
T Consensus 129 L~~~L~~~~i----~~lii~G~~t~~CV~~T~~~a~~~g~~v~v~~Da~~~~~~~~~~~al~~~~~~G~~i~ 196 (196)
T cd01011 129 LAEYLRERGI----DRVDVVGLATDYCVKATALDALKAGFEVRVLEDACRAVDPETIERAIEEMKEAGVVLV 196 (196)
T ss_pred HHHHHHHCCC----CEEEEEEecccHHHHHHHHHHHHCCCEEEEeccccCCCCHHHHHHHHHHHHHccCEEC
Confidence 3444556676 45677777777665 556668888999999876532 2 223556677788763
No 467
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=41.00 E-value=1.9e+02 Score=27.93 Aligned_cols=26 Identities=19% Similarity=0.417 Sum_probs=15.7
Q ss_pred HHHHHHcCCCCCEEEEccChhhHHHHHHHH
Q 021570 232 PEIWEDTRGKVDIFIGGIGTGGTISGAGRY 261 (311)
Q Consensus 232 ~Ei~~Ql~~~pD~vv~pvG~Gg~~~Gi~~~ 261 (311)
.+++++. ++| +|+++|||+.+ =++|+
T Consensus 80 ~~~~~~~--~~D-~IIaiGGGS~i-D~aK~ 105 (382)
T PRK10624 80 VEVFKAS--GAD-YLIAIGGGSPQ-DTCKA 105 (382)
T ss_pred HHHHHhc--CCC-EEEEeCChHHH-HHHHH
Confidence 3444443 477 56888888766 34443
No 468
>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=40.99 E-value=2.9e+02 Score=28.31 Aligned_cols=60 Identities=20% Similarity=0.158 Sum_probs=48.9
Q ss_pred CCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCC
Q 021570 132 ITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSA 191 (311)
Q Consensus 132 ~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~ 191 (311)
+++|+...+.+...-+-..++++|-..|...+-+=|.....+...+++.-++++++++.+
T Consensus 69 i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~kiif~d~~ 128 (537)
T KOG1176|consen 69 IKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNPRLTASEIAKQLKDSKPKLIFVDED 128 (537)
T ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCcccCHHHHHHHHHhcCCeEEEEcCc
Confidence 555655555556666778888889999998888878888888889999999999999987
No 469
>PRK06841 short chain dehydrogenase; Provisional
Probab=40.98 E-value=2.3e+02 Score=24.81 Aligned_cols=32 Identities=25% Similarity=0.266 Sum_probs=26.5
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEEC
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMP 167 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p 167 (311)
+..+|++.+|--|.++|......|.+++++-.
T Consensus 16 k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r 47 (255)
T PRK06841 16 KVAVVTGGASGIGHAIAELFAAKGARVALLDR 47 (255)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 36788888999999999999999998666543
No 470
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=40.90 E-value=3.5e+02 Score=26.28 Aligned_cols=76 Identities=20% Similarity=0.256 Sum_probs=56.8
Q ss_pred HHHHcCCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHH
Q 021570 125 DAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEI 204 (311)
Q Consensus 125 ~A~~~G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~ 204 (311)
.+...+.+.+| .+++...-|--|.|.-..|+..|-.-+|-+.- .++|+...+.+||.=.+-+.+ .++..+..+++
T Consensus 176 av~nta~v~~G-~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~--~~~Kl~~A~~fGAT~~vn~~~--~~~vv~~i~~~ 250 (366)
T COG1062 176 AVVNTAKVEPG-DTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDI--NPEKLELAKKFGATHFVNPKE--VDDVVEAIVEL 250 (366)
T ss_pred HhhhcccCCCC-CeEEEEeccHhHHHHHHHHHHcCCceEEEEeC--CHHHHHHHHhcCCceeecchh--hhhHHHHHHHh
Confidence 45566677887 67899999999999999999999888887654 578999999999987666654 23444444444
Q ss_pred H
Q 021570 205 L 205 (311)
Q Consensus 205 ~ 205 (311)
.
T Consensus 251 T 251 (366)
T COG1062 251 T 251 (366)
T ss_pred c
Confidence 3
No 471
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=40.85 E-value=2e+02 Score=27.06 Aligned_cols=113 Identities=17% Similarity=0.161 Sum_probs=72.4
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeC
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQ 215 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~ 215 (311)
+++|..-..|+-|+++|..++.+|+++..+=|..... ..+.+ .++ +++ +.++. +...++
T Consensus 145 gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~-------~~~~~--~~~----l~e-------ll~~s-Dvv~lh 203 (311)
T PRK08410 145 GKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK-------NEEYE--RVS----LEE-------LLKTS-DIISIH 203 (311)
T ss_pred CCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc-------ccCce--eec----HHH-------HhhcC-CEEEEe
Confidence 3678888999999999999999999988775532110 11111 111 222 22222 334333
Q ss_pred CCCCCcchHhhHHHHHHHHHHHcCCCCCEEEEccChhhHH--HHHHHHHHhcCCCCEEEEEeCCC
Q 021570 216 QFDNPANPKIHYETTGPEIWEDTRGKVDIFIGGIGTGGTI--SGAGRYLKEKNPNIKVIIFVLFI 278 (311)
Q Consensus 216 ~~~n~~~~~~G~~t~a~Ei~~Ql~~~pD~vv~pvG~Gg~~--~Gi~~~lk~~~p~~~iigVe~~~ 278 (311)
- |.+.+ -+.-+..|.+++++ ++++++-+|-|+.+ ..+..+++.- .+. .|.+...
T Consensus 204 ~---Plt~~-T~~li~~~~~~~Mk--~~a~lIN~aRG~vVDe~AL~~AL~~g--~i~-AaLDV~~ 259 (311)
T PRK08410 204 A---PLNEK-TKNLIAYKELKLLK--DGAILINVGRGGIVNEKDLAKALDEK--DIY-AGLDVLE 259 (311)
T ss_pred C---CCCch-hhcccCHHHHHhCC--CCeEEEECCCccccCHHHHHHHHHcC--CeE-EEEecCC
Confidence 2 33332 44567788899994 89999999999987 6778888753 445 5655543
No 472
>PRK05693 short chain dehydrogenase; Provisional
Probab=40.71 E-value=2.7e+02 Score=24.85 Aligned_cols=52 Identities=27% Similarity=0.231 Sum_probs=38.1
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCC
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSA 191 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~ 191 (311)
..+|++.+|-.|.++|......|.+++++... ..+...+...|.+.+.+|-.
T Consensus 3 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~Dl~ 54 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKAAGYEVWATARK---AEDVEALAAAGFTAVQLDVN 54 (274)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHCCCeEEEeeCC
Confidence 46888899999999999999999987776543 34455555567776666644
No 473
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=40.68 E-value=2.6e+02 Score=24.71 Aligned_cols=36 Identities=14% Similarity=0.011 Sum_probs=27.7
Q ss_pred CCCEEEEccChhhHHHHHHHHHHhcC----CCCEEEEEeCCC
Q 021570 241 KVDIFIGGIGTGGTISGAGRYLKEKN----PNIKVIIFVLFI 278 (311)
Q Consensus 241 ~pD~vv~pvG~Gg~~~Gi~~~lk~~~----p~~~iigVe~~~ 278 (311)
.||+||+. +...+.|+.+++++.+ .++.|+|++-..
T Consensus 180 ~~~ai~~~--~d~~a~g~~~~l~~~g~~vP~di~vvg~d~~~ 219 (269)
T cd06297 180 PPLAVFAS--ADQQALGALQEAVELGLTVGEDVRVVGFDDHP 219 (269)
T ss_pred CCcEEEEc--CcHHHHHHHHHHHHcCCCCCCceEEEEECCch
Confidence 58999887 4456779999999865 378999997653
No 474
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=40.64 E-value=90 Score=30.08 Aligned_cols=55 Identities=15% Similarity=0.080 Sum_probs=32.6
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCC
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSA 191 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~ 191 (311)
+.++..++|..|..++..+...+=.-.|++|...-......+...|++++.++-+
T Consensus 47 ~~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~~~~~~~~~G~~~v~vd~d 101 (376)
T TIGR02379 47 KKALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIR 101 (376)
T ss_pred CeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecC
Confidence 4466666666665555544322223456666655555566666778888887654
No 475
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=40.60 E-value=2e+02 Score=29.17 Aligned_cols=104 Identities=26% Similarity=0.241 Sum_probs=67.9
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCC
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQ 216 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~ 216 (311)
++|..-..|+-|.++|..++.+|++++++=|.. +..+ ...+|++.. + .++. .++. +...+.-
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~-~~~~---~~~~g~~~~--~----l~el-------l~~a-DiV~l~l 202 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYI-SPER---AAQLGVELV--S----LDEL-------LARA-DFITLHT 202 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCC-ChhH---HHhcCCEEE--c----HHHH-------HhhC-CEEEEcc
Confidence 578888999999999999999999988886642 2222 234565532 1 3332 2222 3444433
Q ss_pred CCCCcchHhhHHHHHHHHHHHcCCCCCEEEEccChhhHH--HHHHHHHHh
Q 021570 217 FDNPANPKIHYETTGPEIWEDTRGKVDIFIGGIGTGGTI--SGAGRYLKE 264 (311)
Q Consensus 217 ~~n~~~~~~G~~t~a~Ei~~Ql~~~pD~vv~pvG~Gg~~--~Gi~~~lk~ 264 (311)
-.++. -...+..|.+.+++ ++.+++-+|-|+.+ ..+..+++.
T Consensus 203 P~t~~----t~~li~~~~l~~mk--~ga~lIN~aRG~~vde~aL~~aL~~ 246 (526)
T PRK13581 203 PLTPE----TRGLIGAEELAKMK--PGVRIINCARGGIIDEAALAEALKS 246 (526)
T ss_pred CCChH----hhcCcCHHHHhcCC--CCeEEEECCCCceeCHHHHHHHHhc
Confidence 22222 22344568888884 79999999999987 666777765
No 476
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=40.41 E-value=2.3e+02 Score=27.02 Aligned_cols=55 Identities=31% Similarity=0.491 Sum_probs=39.6
Q ss_pred CCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEE
Q 021570 130 GLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVL 187 (311)
Q Consensus 130 G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~ 187 (311)
+.+.+|+..+|. ..|..|.+++..|+.+|...++.+.. ...|...++.+|++-+.
T Consensus 199 ~~~~~g~~VlV~-g~g~vG~~ai~lA~~~G~~~vi~~~~--~~~~~~~~~~~g~~~~v 253 (384)
T cd08265 199 GGFRPGAYVVVY-GAGPIGLAAIALAKAAGASKVIAFEI--SEERRNLAKEMGADYVF 253 (384)
T ss_pred CCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcC--CHHHHHHHHHcCCCEEE
Confidence 566777666666 57999999999999999854444432 34478888889985443
No 477
>PRK05957 aspartate aminotransferase; Provisional
Probab=40.24 E-value=3.4e+02 Score=25.91 Aligned_cols=54 Identities=11% Similarity=0.137 Sum_probs=31.3
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCC
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSA 191 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~ 191 (311)
..|+..++++.|..++..+- +.-.-.|+++.-.-..-...++..|++++.++.+
T Consensus 90 ~~i~~t~G~~~~l~~~~~~~-~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~ 143 (389)
T PRK05957 90 QAIVVTAGSNMAFMNAILAI-TDPGDEIILNTPYYFNHEMAITMAGCQPILVPTD 143 (389)
T ss_pred CeEEEeCChHHHHHHHHHHh-cCCCCEEEEeCCCCcCHHHHHHhcCCEEEEeecC
Confidence 45777777888876665443 2222334444322222234567889999888654
No 478
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=40.13 E-value=1.1e+02 Score=30.05 Aligned_cols=52 Identities=23% Similarity=0.139 Sum_probs=39.7
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCC-eEEEEECCC-----CCHHHHHHHHhcCCEEEEE
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGY-KLILTMPAS-----MSLERRVLLKAFGAELVLT 188 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi-~~~vv~p~~-----~~~~k~~~l~~~GA~V~~v 188 (311)
+.|+...+||.|.-+|..+.++|. +++++...+ ........++..|.+++.-
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~~~~~~~~~GV~i~~~ 331 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEEEVEHAKEEGVEFEWL 331 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHCCCEEEec
Confidence 568888899999999999999998 788876532 2344556777888887753
No 479
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=40.04 E-value=2.6e+02 Score=24.65 Aligned_cols=51 Identities=16% Similarity=0.265 Sum_probs=34.2
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHH-HhcCCEEEEEC
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLL-KAFGAELVLTD 189 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l-~~~GA~V~~v~ 189 (311)
+..+|++.+|.-|.++|...+..|.+++++-.. ..+...+ ..++.++..+.
T Consensus 7 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~ 58 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFLAEGARVAVLERS---AEKLASLRQRFGDHVLVVE 58 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHHhCCcceEEE
Confidence 467888999999999999999999987665432 2333333 23454444443
No 480
>PRK07831 short chain dehydrogenase; Provisional
Probab=39.83 E-value=2.3e+02 Score=25.06 Aligned_cols=31 Identities=26% Similarity=0.407 Sum_probs=24.3
Q ss_pred CceEEeeCcC-hHHHHHHHHHHHcCCeEEEEE
Q 021570 136 KSILVEPTSG-NTGIGLAFIAASKGYKLILTM 166 (311)
Q Consensus 136 ~~~vv~aSsG-N~g~AlA~~aa~~Gi~~~vv~ 166 (311)
+..+|++.+| .-|.+++...+..|.+++++-
T Consensus 18 k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~ 49 (262)
T PRK07831 18 KVVLVTAAAGTGIGSATARRALEEGARVVISD 49 (262)
T ss_pred CEEEEECCCcccHHHHHHHHHHHcCCEEEEEe
Confidence 3567777776 699999999999999865543
No 481
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=39.79 E-value=2.2e+02 Score=25.29 Aligned_cols=114 Identities=16% Similarity=0.165 Sum_probs=61.5
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcC---------------CEEEEECCCCChHHHHHHH
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFG---------------AELVLTDSAKGMKGAVQKA 201 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~G---------------A~V~~v~~~~~~~~a~~~a 201 (311)
+.|+...+|.-|.-=|..-...|-+++|+-|+- .++-....+..+ +.+++...+. .+--++.
T Consensus 13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~-~~el~~~~~~~~i~~~~~~~~~~~~~~~~lviaAt~d--~~ln~~i 89 (210)
T COG1648 13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEF-EPELKALIEEGKIKWIEREFDAEDLDDAFLVIAATDD--EELNERI 89 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCc-cHHHHHHHHhcCcchhhcccChhhhcCceEEEEeCCC--HHHHHHH
Confidence 457788888888888888888899999988876 333222222222 4444444331 1111222
Q ss_pred HHHHHhCCCceeeCCCCCCcchHhhHHHHHHHHHHHcCCCCCEEEEccChhhHHHHHHHHHHh
Q 021570 202 EEILNSTPNAYMLQQFDNPANPKIHYETTGPEIWEDTRGKVDIFIGGIGTGGTISGAGRYLKE 264 (311)
Q Consensus 202 ~~~~~~~~~~~~~~~~~n~~~~~~G~~t~a~Ei~~Ql~~~pD~vv~pvG~Gg~~~Gi~~~lk~ 264 (311)
.+.+++. ..++|-.++|..-. -.+...+ +..-|.++++|||..--+++.+++
T Consensus 90 ~~~a~~~--~i~vNv~D~p~~~~---f~~Pa~~------~r~~l~iaIsT~G~sP~la~~ir~ 141 (210)
T COG1648 90 AKAARER--RILVNVVDDPELCD---FIFPAIV------DRGPLQIAISTGGKSPVLARLLRE 141 (210)
T ss_pred HHHHHHh--CCceeccCCcccCc---eecceee------ccCCeEEEEECCCCChHHHHHHHH
Confidence 3333332 24444444443210 0111111 122388888888877778888876
No 482
>PHA02542 41 41 helicase; Provisional
Probab=39.76 E-value=4e+02 Score=26.83 Aligned_cols=43 Identities=19% Similarity=0.090 Sum_probs=24.0
Q ss_pred CCCCCCCceEEeeCc--C--hHHHHHHHHHHHcCCeEEEEECCCCCHH
Q 021570 130 GLITPGKSILVEPTS--G--NTGIGLAFIAASKGYKLILTMPASMSLE 173 (311)
Q Consensus 130 G~~~~g~~~vv~aSs--G--N~g~AlA~~aa~~Gi~~~vv~p~~~~~~ 173 (311)
|-+.+|.-.|+.+.. | .++..+|..++..|.++.+|-= .++..
T Consensus 185 gGl~~G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSL-EM~~~ 231 (473)
T PHA02542 185 GGAERKTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISM-EMAEE 231 (473)
T ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEec-cCCHH
Confidence 345666555666643 4 4444455555567888766643 34433
No 483
>PRK06125 short chain dehydrogenase; Provisional
Probab=39.75 E-value=1.1e+02 Score=27.09 Aligned_cols=32 Identities=28% Similarity=0.305 Sum_probs=26.5
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEEC
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMP 167 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p 167 (311)
+..+|++.+|..|.++|......|.+++++-.
T Consensus 8 k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r 39 (259)
T PRK06125 8 KRVLITGASKGIGAAAAEAFAAEGCHLHLVAR 39 (259)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC
Confidence 36788889999999999999999997666643
No 484
>PRK06180 short chain dehydrogenase; Provisional
Probab=39.70 E-value=2.2e+02 Score=25.49 Aligned_cols=64 Identities=17% Similarity=0.088 Sum_probs=39.4
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHH-hcCCEEEEECCCCChHHHHHHHH
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLK-AFGAELVLTDSAKGMKGAVQKAE 202 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~-~~GA~V~~v~~~~~~~~a~~~a~ 202 (311)
+..+|++.+|..|.+++......|.+++++... +.++..+. ..+.++..+..+-.-.+.+..+.
T Consensus 5 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~---~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~ 69 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAALAAGHRVVGTVRS---EAARADFEALHPDRALARLLDVTDFDAIDAVV 69 (277)
T ss_pred CEEEEecCCChHHHHHHHHHHhCcCEEEEEeCC---HHHHHHHHhhcCCCeeEEEccCCCHHHHHHHH
Confidence 357899999999999999999999997776542 23333333 23444544433322234444443
No 485
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=39.41 E-value=1.4e+02 Score=28.32 Aligned_cols=33 Identities=21% Similarity=0.443 Sum_probs=16.6
Q ss_pred CCCEEEEccChhhHHHHHHHHHHhcCCCCEEEEEeC
Q 021570 241 KVDIFIGGIGTGGTISGAGRYLKEKNPNIKVIIFVL 276 (311)
Q Consensus 241 ~pD~vv~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~ 276 (311)
++| +|+++|+|+.+ =+++++.... ..++|.|=.
T Consensus 77 ~~d-~IIavGGGs~~-D~aK~ia~~~-~~p~i~VPT 109 (349)
T cd08550 77 EAD-VIIGVGGGKTL-DTAKAVADRL-DKPIVIVPT 109 (349)
T ss_pred CCC-EEEEecCcHHH-HHHHHHHHHc-CCCEEEeCC
Confidence 356 45677766654 4455543321 234555543
No 486
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=39.06 E-value=2.2e+02 Score=28.11 Aligned_cols=78 Identities=14% Similarity=0.164 Sum_probs=43.5
Q ss_pred eEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHH----HHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCcee
Q 021570 138 ILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLE----RRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYM 213 (311)
Q Consensus 138 ~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~----k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~ 213 (311)
..+..++|-.+...+..+- ..-.-.|+++...-.. -...++.+|++++.++... . +.++.+ ..++...+|
T Consensus 81 ~al~~~sG~~Ai~~al~~l-l~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~~d-~-e~l~~a---i~~~tklV~ 154 (431)
T PRK08248 81 GALAVSSGQAAITYSILNI-ASAGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVDPSD-P-ENFEAA---ITDKTKALF 154 (431)
T ss_pred cEEEECCHHHHHHHHHHHH-hCCCCEEEEccCchhhHHHHHHHHHHhCCEEEEEECCCC-H-HHHHHh---cCCCCeEEE
Confidence 3566788888888777654 2222345555532211 1234677999999998642 2 233322 223335677
Q ss_pred eCCCCCCc
Q 021570 214 LQQFDNPA 221 (311)
Q Consensus 214 ~~~~~n~~ 221 (311)
+....||.
T Consensus 155 l~sp~NPt 162 (431)
T PRK08248 155 AETIGNPK 162 (431)
T ss_pred EECCCCCC
Confidence 76555664
No 487
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=39.03 E-value=1.2e+02 Score=27.64 Aligned_cols=51 Identities=20% Similarity=0.014 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHc-CCCCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEE
Q 021570 116 DRIGFSMIADAEQK-GLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTM 166 (311)
Q Consensus 116 dRga~~~v~~A~~~-G~~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~ 166 (311)
-+|..+.+..+.+. |.-.....+++.-..||-|..+|..-..+|.+++.+.
T Consensus 11 g~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vs 62 (244)
T PF00208_consen 11 GYGVAYAIEAALEHLGGDSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVS 62 (244)
T ss_dssp HHHHHHHHHHHHHHTTCHSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEe
Confidence 35667777776665 4332224678888889999999999999999988773
No 488
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=38.96 E-value=1.2e+02 Score=28.61 Aligned_cols=52 Identities=21% Similarity=0.125 Sum_probs=39.2
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCe-EEEEECCC-----CCHHHHHHHHhcCCEEEEE
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYK-LILTMPAS-----MSLERRVLLKAFGAELVLT 188 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~-~~vv~p~~-----~~~~k~~~l~~~GA~V~~v 188 (311)
+.++...+|+.|.-+|......|.+ ++|+.... .....+..++.+|.+++.-
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~~~~~~~~~l~~~gi~i~~~ 230 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPAGKYEIERLIARGVEFLEL 230 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCCCCHHHHHHHHHcCCEEeec
Confidence 5688889999999999988888997 88887532 1234456678888888654
No 489
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=38.91 E-value=1.3e+02 Score=28.70 Aligned_cols=53 Identities=25% Similarity=0.305 Sum_probs=36.0
Q ss_pred eEEeeCcC--hHHHHHHHHHHHcCCeEEEEECCCC--CHHHHH----HHHhcCCEEEEECC
Q 021570 138 ILVEPTSG--NTGIGLAFIAASKGYKLILTMPASM--SLERRV----LLKAFGAELVLTDS 190 (311)
Q Consensus 138 ~vv~aSsG--N~g~AlA~~aa~~Gi~~~vv~p~~~--~~~k~~----~l~~~GA~V~~v~~ 190 (311)
+|+-...+ |.+.|+..+++++|++++++.|+.. +...+. ..+..|+.+...+.
T Consensus 158 ~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d 218 (334)
T PRK01713 158 SYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDD 218 (334)
T ss_pred EEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcC
Confidence 34444443 6899999999999999999999863 222222 23456888876653
No 490
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=38.77 E-value=85 Score=30.01 Aligned_cols=54 Identities=31% Similarity=0.484 Sum_probs=36.1
Q ss_pred eEEeeCcChHHHHHHHHHHHc----CCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHh
Q 021570 138 ILVEPTSGNTGIGLAFIAASK----GYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNS 207 (311)
Q Consensus 138 ~vv~aSsGN~g~AlA~~aa~~----Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~ 207 (311)
.|++.-+=|++-|+|++|... |=..++|+|.+- .+.....|.++++.|.+++++
T Consensus 80 illEP~gRnTApAIA~aa~~~~~~~~d~~~lVlpsDH----------------~I~d~~af~~av~~A~~~A~~ 137 (333)
T COG0836 80 IILEPEGRNTAPAIALAALSATAEGGDALVLVLPSDH----------------VIADEEAFLNAVKKAEKAAEE 137 (333)
T ss_pred eEeccCCCCcHHHHHHHHHHHHHhCCCcEEEEecCcc----------------eeccHHHHHHHHHHHHHHHHc
Confidence 688999999999999987543 433566778762 222222266777777777765
No 491
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=38.76 E-value=38 Score=30.58 Aligned_cols=98 Identities=15% Similarity=0.105 Sum_probs=54.1
Q ss_pred CcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHH-----H------------------------HhcCCEEEEECCCCC
Q 021570 143 TSGNTGIGLAFIAASKGYKLILTMPASMSLERRVL-----L------------------------KAFGAELVLTDSAKG 193 (311)
Q Consensus 143 SsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~-----l------------------------~~~GA~V~~v~~~~~ 193 (311)
.=|....+|+.+-+..|.++.|+||.- ...+... + ..-|.++++++...
T Consensus 17 GLgdv~~~L~kaL~~~G~~V~Vi~P~y-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~~~~~~~v~v~~i~~~~- 94 (245)
T PF08323_consen 17 GLGDVVGSLPKALAKQGHDVRVIMPKY-GFIDEEYFQLEPVRRLSVPFGGPVPVGVWYEVRVYRYPVDGVPVYFIDNPE- 94 (245)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEEE-T-HHHHHHCTTEEEEEEES-STTCEEEEE----EEEEEEEETTEEEEEEESHH-
T ss_pred cHhHHHHHHHHHHHhcCCeEEEEEccc-hhhhhhhhcceEEEEeccccccccccccceEEEEEEEEcCCccEEEecChh-
Confidence 346888889999999999999999975 2222211 0 01255555555431
Q ss_pred hHHHHHHHHHHHHhCCCceeeC----CCCCCcchHhhHHHHHHHHHHHcCCCCCEEEEccChhhHH
Q 021570 194 MKGAVQKAEEILNSTPNAYMLQ----QFDNPANPKIHYETTGPEIWEDTRGKVDIFIGGIGTGGTI 255 (311)
Q Consensus 194 ~~~a~~~a~~~~~~~~~~~~~~----~~~n~~~~~~G~~t~a~Ei~~Ql~~~pD~vv~pvG~Gg~~ 255 (311)
+. ++++ .|-+ ..+|..++ +-....+.|+++++++.||.|-+==--.+++
T Consensus 95 ----------~f-~r~~-iY~~~~~~~~d~~~rf-~~fs~a~le~~~~l~~~pDIIH~hDW~tal~ 147 (245)
T PF08323_consen 95 ----------YF-DRPG-IYGDNGGDYPDNAERF-AFFSRAALELLKKLGWKPDIIHCHDWHTALA 147 (245)
T ss_dssp ----------HH-GSSS-SSBSTSSBHTTHHHHH-HHHHHHHHHHHCTCT-S-SEEEEECGGGTTH
T ss_pred ----------hc-cccc-eeccCCCcchhHHHHH-HHHHHHHHHHHHhhCCCCCEEEecCchHHHH
Confidence 11 2323 4432 12333444 2456777899999877899997643333333
No 492
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=38.75 E-value=2.1e+02 Score=27.86 Aligned_cols=27 Identities=15% Similarity=0.233 Sum_probs=16.3
Q ss_pred HHHHHHHcCCCCCEEEEccChhhHHHHHHHH
Q 021570 231 GPEIWEDTRGKVDIFIGGIGTGGTISGAGRY 261 (311)
Q Consensus 231 a~Ei~~Ql~~~pD~vv~pvG~Gg~~~Gi~~~ 261 (311)
+.+++++. ++|. |+++|||+.+ =++|+
T Consensus 98 ~~~~~r~~--~~D~-IiavGGGS~i-D~AKa 124 (395)
T PRK15454 98 AVAQLRES--GCDG-VIAFGGGSVL-DAAKA 124 (395)
T ss_pred HHHHHHhc--CcCE-EEEeCChHHH-HHHHH
Confidence 44555554 4775 5788888876 33443
No 493
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=38.53 E-value=4.1e+02 Score=26.39 Aligned_cols=78 Identities=13% Similarity=0.073 Sum_probs=43.7
Q ss_pred CCCCchhhHHHHHHHHHHHHcC--C-CCCCCceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHH-hcCCE
Q 021570 109 EPCCSVKDRIGFSMIADAEQKG--L-ITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLK-AFGAE 184 (311)
Q Consensus 109 nPtGS~KdRga~~~v~~A~~~G--~-~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~-~~GA~ 184 (311)
.+.|....|.+....... ..| . +.+ ..|+..++++.+..+...+- .+-.-.|++|.-.-..-...+. ..|++
T Consensus 84 ~~~G~~~LR~aiA~~l~~-~~~~~~~v~~--~~Iiit~Ga~~al~~l~~~l-~~pGd~Vlv~~P~Y~~~~~~~~~~~g~~ 159 (468)
T PLN02450 84 DYHGLPAFKNALAEFMSE-IRGNKVTFDP--NKLVLTAGATSANETLMFCL-AEPGDAFLLPTPYYPGFDRDLKWRTGVE 159 (468)
T ss_pred CCCChHHHHHHHHHHHHH-hhCCCCCcCh--HHeEEccChHHHHHHHHHHh-CCCCCEEEECCCCCCchHHHHhhcCCcE
Confidence 356887888765544332 123 1 333 34777777788776666543 2333455555433222223344 58999
Q ss_pred EEEECC
Q 021570 185 LVLTDS 190 (311)
Q Consensus 185 V~~v~~ 190 (311)
++.++.
T Consensus 160 ~v~v~~ 165 (468)
T PLN02450 160 IVPIHC 165 (468)
T ss_pred EEEEec
Confidence 998874
No 494
>PTZ00188 adrenodoxin reductase; Provisional
Probab=38.48 E-value=2.2e+02 Score=28.97 Aligned_cols=34 Identities=6% Similarity=-0.175 Sum_probs=27.8
Q ss_pred ceEEeeCcChHHHHHHHH-HHHcCCeEEEEECCCC
Q 021570 137 SILVEPTSGNTGIGLAFI-AASKGYKLILTMPASM 170 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~-aa~~Gi~~~vv~p~~~ 170 (311)
..|++-.+|-.|...|.+ +++.|.+++||-....
T Consensus 40 krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~ 74 (506)
T PTZ00188 40 FKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPN 74 (506)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 468999999999999885 6678999999965443
No 495
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=38.38 E-value=3.7e+02 Score=25.82 Aligned_cols=31 Identities=23% Similarity=0.170 Sum_probs=27.1
Q ss_pred eEEeeCcChHHHHHHHHHHHcCCeEEEEECC
Q 021570 138 ILVEPTSGNTGIGLAFIAASKGYKLILTMPA 168 (311)
Q Consensus 138 ~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~ 168 (311)
.|..-.+|+||.|+|..++..|.+++++.-+
T Consensus 3 kI~ViGaGswGTALA~~la~ng~~V~lw~r~ 33 (329)
T COG0240 3 KIAVIGAGSWGTALAKVLARNGHEVRLWGRD 33 (329)
T ss_pred eEEEEcCChHHHHHHHHHHhcCCeeEEEecC
Confidence 4777899999999999999999888888754
No 496
>PRK07201 short chain dehydrogenase; Provisional
Probab=38.35 E-value=1.5e+02 Score=30.51 Aligned_cols=67 Identities=19% Similarity=0.140 Sum_probs=42.1
Q ss_pred CceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHHH
Q 021570 136 KSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMS-LERRVLLKAFGAELVLTDSAKGMKGAVQKAE 202 (311)
Q Consensus 136 ~~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~-~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~ 202 (311)
+..+|++.+|..|.++|..-...|.+++++...... ......++..|.++..+..|-.-.+.++.+.
T Consensus 372 k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~ 439 (657)
T PRK07201 372 KVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTV 439 (657)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHH
Confidence 357888899999999999988999987776543211 1222345556777766554432233444433
No 497
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=38.33 E-value=3.6e+02 Score=25.77 Aligned_cols=119 Identities=13% Similarity=0.028 Sum_probs=66.1
Q ss_pred ceEEeeCcChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCCceeeCC
Q 021570 137 SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQ 216 (311)
Q Consensus 137 ~~vv~aSsGN~g~AlA~~aa~~Gi~~~vv~p~~~~~~k~~~l~~~GA~V~~v~~~~~~~~a~~~a~~~~~~~~~~~~~~~ 216 (311)
++|..-..||.|.++|...+..|++++++.+......+ ..+..|.++. + ..++ +++. +..++.-
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~--~A~~~G~~~~----s--~~ea-------a~~A-DVVvLaV 81 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWK--KAEADGFEVL----T--VAEA-------AKWA-DVIMILL 81 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHH--HHHHCCCeeC----C--HHHH-------HhcC-CEEEEcC
Confidence 56777899999999999999999998887765433222 3445676542 1 2222 2221 3444322
Q ss_pred CCCCcchHhhHHHHH-HHHHHHcCCCCCEE-EEccChhhHHHHHHHHHHhcCCCCEEEEEeCCCCchhhh
Q 021570 217 FDNPANPKIHYETTG-PEIWEDTRGKVDIF-IGGIGTGGTISGAGRYLKEKNPNIKVIIFVLFISKPYLA 284 (311)
Q Consensus 217 ~~n~~~~~~G~~t~a-~Ei~~Ql~~~pD~v-v~pvG~Gg~~~Gi~~~lk~~~p~~~iigVe~~~s~~~~~ 284 (311)
|.. .+..+. .+|...+. ++.+ +++.| - .+..+-....++++|+-|.|.+.....+
T Consensus 82 ---Pd~---~~~~V~~~~I~~~Lk--~g~iL~~a~G--~---~i~~~~~~p~~~~~Vi~vaPn~Pg~~vr 138 (330)
T PRK05479 82 ---PDE---VQAEVYEEEIEPNLK--EGAALAFAHG--F---NIHFGQIVPPADVDVIMVAPKGPGHLVR 138 (330)
T ss_pred ---CHH---HHHHHHHHHHHhcCC--CCCEEEECCC--C---ChhhceeccCCCCcEEEeCCCCCchhhh
Confidence 211 123333 45666553 4444 44444 1 2222212223477899999988766333
No 498
>PF11814 DUF3335: Peptidase_C39 like family; InterPro: IPR021770 This family of proteins are functionally uncharacterised. This family is only found in bacteria. This presumed domain is typically between 226 to 230 amino acids in length.
Probab=38.25 E-value=71 Score=28.51 Aligned_cols=33 Identities=24% Similarity=0.444 Sum_probs=24.5
Q ss_pred ceEEeeC--cChHHHHHHHHHHHcCCeEEEEECCC
Q 021570 137 SILVEPT--SGNTGIGLAFIAASKGYKLILTMPAS 169 (311)
Q Consensus 137 ~~vv~aS--sGN~g~AlA~~aa~~Gi~~~vv~p~~ 169 (311)
++|.-.| +|-.-.+||.+|++.|+++.|++...
T Consensus 43 TTifmtsGhGGC~P~GLAlAA~rrG~~vev~~~~~ 77 (207)
T PF11814_consen 43 TTIFMTSGHGGCGPFGLALAAARRGFKVEVWVSTD 77 (207)
T ss_pred ceecccCCCCCcChHHHHHHHHHcCCceEEEECCC
Confidence 3454444 36677788888889999999999764
No 499
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=38.22 E-value=3.4e+02 Score=25.38 Aligned_cols=108 Identities=11% Similarity=0.031 Sum_probs=56.7
Q ss_pred CCCCchhhHHHHHHHHHHHHcCC-CCCCCceEEeeCcChHHHHHHHHHHHcCCe---EEEEECCCCCHHHHHHHHhcCCE
Q 021570 109 EPCCSVKDRIGFSMIADAEQKGL-ITPGKSILVEPTSGNTGIGLAFIAASKGYK---LILTMPASMSLERRVLLKAFGAE 184 (311)
Q Consensus 109 nPtGS~KdRga~~~v~~A~~~G~-~~~g~~~vv~aSsGN~g~AlA~~aa~~Gi~---~~vv~p~~~~~~k~~~l~~~GA~ 184 (311)
.|.|.-..|.+...... ...|. +.++ ..|+..++++.+.-++..+- .+-. -.|++|.-.-..-...++.+|++
T Consensus 34 ~~~G~~~lr~aia~~~~-~~~g~~~~~~-~~Iiit~Gs~~ai~~~~~~~-~~~g~~~d~Vl~~~p~y~~~~~~~~~~g~~ 110 (350)
T TIGR03537 34 SALGTKALREAISGWFE-RRFGVKLDPD-AQVLPSAGSKEAIFHFPLVF-IDPEEDRRRVIFGTPGYPVYERGALFAGGE 110 (350)
T ss_pred CCCCCHHHHHHHHHHHH-HHhCCCCCCC-CcEEEcCChHHHHHHHHHHH-cCCCCCCceEEEcCCCCcchHHHHHhcCCE
Confidence 34677777765444332 23353 2222 24776776666665554433 2221 25666654444555667889999
Q ss_pred EEEECCC--CCh--H-HHHHHHHHHHHhCCCceeeCCCCCCcc
Q 021570 185 LVLTDSA--KGM--K-GAVQKAEEILNSTPNAYMLQQFDNPAN 222 (311)
Q Consensus 185 V~~v~~~--~~~--~-~a~~~a~~~~~~~~~~~~~~~~~n~~~ 222 (311)
++.++-+ .++ + +.++.+ ..++...+++...+||..
T Consensus 111 ~~~v~~~~~~~~~~d~~~l~~~---~~~~~~~i~i~~p~NPtG 150 (350)
T TIGR03537 111 PTAVKLKKEDGFLLRLEKVEKS---ILEETKIVWINYPHNPTG 150 (350)
T ss_pred EEEcccCcccCCccCHHHHHHh---hhhccEEEEEeCCCCCcC
Confidence 9988653 122 1 233332 222335666665455543
No 500
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=38.15 E-value=47 Score=30.48 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=0.0
Q ss_pred EEeeCcChHHHHHHHHHHHcCCeEEEE
Q 021570 139 LVEPTSGNTGIGLAFIAASKGYKLILT 165 (311)
Q Consensus 139 vv~aSsGN~g~AlA~~aa~~Gi~~~vv 165 (311)
|+...+|=.|.++|.+.++.|++++||
T Consensus 4 V~IvGaG~aGl~~A~~L~~~G~~v~i~ 30 (356)
T PF01494_consen 4 VAIVGAGPAGLAAALALARAGIDVTII 30 (356)
T ss_dssp EEEE--SHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEECCCHHHHHHHHHHHhcccccccc
Done!