Query 021571
Match_columns 310
No_of_seqs 20 out of 22
Neff 2.0
Searched_HMMs 46136
Date Fri Mar 29 04:02:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021571.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021571hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK02224 chromosome segregatio 98.0 0.014 3E-07 58.7 27.9 132 21-160 461-592 (880)
2 KOG0161 Myosin class II heavy 97.9 0.0044 9.4E-08 70.1 24.4 192 43-265 1091-1283(1930)
3 TIGR02168 SMC_prok_B chromosom 97.8 0.041 8.9E-07 54.9 29.0 29 30-58 679-707 (1179)
4 TIGR02168 SMC_prok_B chromosom 97.3 0.21 4.6E-06 49.9 27.8 75 26-100 682-756 (1179)
5 TIGR02169 SMC_prok_A chromosom 97.2 0.33 7.1E-06 49.1 29.4 26 263-288 904-929 (1164)
6 TIGR02169 SMC_prok_A chromosom 97.0 0.53 1.2E-05 47.6 28.4 22 259-280 466-487 (1164)
7 TIGR00606 rad50 rad50. This fa 96.9 0.62 1.3E-05 50.4 25.6 89 26-114 693-781 (1311)
8 COG1196 Smc Chromosome segrega 96.9 0.54 1.2E-05 50.3 24.9 15 252-266 946-960 (1163)
9 COG1196 Smc Chromosome segrega 96.6 1.4 3.1E-05 47.2 28.4 76 28-103 667-742 (1163)
10 KOG0977 Nuclear envelope prote 96.4 0.98 2.1E-05 46.4 21.4 127 17-153 85-217 (546)
11 TIGR00606 rad50 rad50. This fa 95.9 3.4 7.5E-05 44.9 26.6 88 39-126 748-843 (1311)
12 PF09738 DUF2051: Double stran 95.8 0.065 1.4E-06 50.7 9.6 87 23-123 79-165 (302)
13 PF00038 Filament: Intermediat 95.8 1.3 2.9E-05 39.5 21.2 76 29-104 62-151 (312)
14 TIGR03185 DNA_S_dndD DNA sulfu 95.4 3.3 7.1E-05 41.6 23.6 97 26-125 214-313 (650)
15 PRK02224 chromosome segregatio 95.3 3.9 8.5E-05 41.6 24.8 18 46-63 255-272 (880)
16 PF00038 Filament: Intermediat 95.2 2.1 4.6E-05 38.2 21.2 137 30-179 6-142 (312)
17 KOG0612 Rho-associated, coiled 94.7 9.6 0.00021 43.0 24.8 202 47-273 466-692 (1317)
18 PF07888 CALCOCO1: Calcium bin 94.5 6.9 0.00015 40.5 25.5 53 245-297 347-399 (546)
19 PF07888 CALCOCO1: Calcium bin 94.2 7.8 0.00017 40.1 23.7 41 91-131 262-302 (546)
20 PRK04778 septation ring format 94.2 6.6 0.00014 39.2 18.8 71 56-126 289-369 (569)
21 PF09726 Macoilin: Transmembra 93.0 6.6 0.00014 41.1 17.0 71 37-107 483-575 (697)
22 PRK04778 septation ring format 92.4 13 0.00028 37.2 18.1 241 45-287 252-508 (569)
23 PF01576 Myosin_tail_1: Myosin 91.9 0.047 1E-06 57.0 0.0 222 43-287 33-268 (859)
24 PRK04863 mukB cell division pr 91.6 29 0.00062 39.6 23.3 81 185-274 452-539 (1486)
25 smart00787 Spc7 Spc7 kinetocho 91.6 3 6.6E-05 39.5 11.5 72 83-178 217-288 (312)
26 PF05335 DUF745: Protein of un 91.5 3.4 7.4E-05 37.1 11.2 93 80-179 70-169 (188)
27 PRK11637 AmiB activator; Provi 91.5 13 0.00029 35.4 19.1 27 199-227 130-156 (428)
28 PRK09039 hypothetical protein; 91.4 13 0.00029 35.3 16.2 30 147-176 123-152 (343)
29 PF01576 Myosin_tail_1: Myosin 91.1 0.063 1.4E-06 56.1 0.0 223 65-296 168-397 (859)
30 PF09787 Golgin_A5: Golgin sub 90.6 19 0.00041 35.7 19.9 94 39-132 113-234 (511)
31 PF12128 DUF3584: Protein of u 89.9 34 0.00073 37.4 24.9 41 163-206 727-767 (1201)
32 PRK11637 AmiB activator; Provi 89.7 19 0.00042 34.3 20.9 57 46-102 72-128 (428)
33 PF03915 AIP3: Actin interacti 89.6 2.2 4.9E-05 42.3 9.2 203 31-275 74-295 (424)
34 PF05701 WEMBL: Weak chloropla 89.4 25 0.00053 35.2 21.7 34 159-192 335-368 (522)
35 PF12128 DUF3584: Protein of u 89.4 37 0.0008 37.2 25.3 92 158-268 768-861 (1201)
36 PF15294 Leu_zip: Leucine zipp 89.4 4.6 9.9E-05 38.6 10.7 74 171-247 204-277 (278)
37 PF06160 EzrA: Septation ring 89.1 27 0.00058 35.2 18.9 213 25-249 249-491 (560)
38 TIGR03185 DNA_S_dndD DNA sulfu 88.4 31 0.00066 34.9 22.2 93 26-126 184-276 (650)
39 PF08614 ATG16: Autophagy prot 88.0 2.2 4.7E-05 36.9 7.0 98 13-124 59-163 (194)
40 KOG0161 Myosin class II heavy 88.0 64 0.0014 38.2 26.5 47 237-287 1090-1136(1930)
41 PF10174 Cast: RIM-binding pro 86.7 50 0.0011 35.5 24.6 68 224-291 225-302 (775)
42 KOG4674 Uncharacterized conser 86.6 75 0.0016 37.5 25.5 217 42-267 766-1002(1822)
43 COG0419 SbcC ATPase involved i 85.7 51 0.0011 34.7 26.7 57 145-201 387-443 (908)
44 PF09755 DUF2046: Uncharacteri 85.1 40 0.00087 33.0 17.7 157 13-175 12-192 (310)
45 COG1579 Zn-ribbon protein, pos 83.2 41 0.00088 31.6 13.4 38 208-245 160-198 (239)
46 PRK04863 mukB cell division pr 82.9 95 0.0021 35.6 23.4 49 150-198 372-420 (1486)
47 PF00261 Tropomyosin: Tropomyo 82.5 35 0.00077 30.4 17.6 50 112-161 113-162 (237)
48 KOG0996 Structural maintenance 82.2 1E+02 0.0022 35.4 25.6 246 35-292 334-600 (1293)
49 KOG0933 Structural maintenance 81.8 86 0.0019 35.5 16.8 186 82-288 682-901 (1174)
50 PF09730 BicD: Microtubule-ass 81.2 29 0.00062 37.1 12.7 162 112-297 265-426 (717)
51 PF04156 IncA: IncA protein; 81.1 32 0.00069 28.9 11.9 72 47-118 79-150 (191)
52 COG1579 Zn-ribbon protein, pos 80.8 50 0.0011 31.0 15.0 66 140-205 6-75 (239)
53 PHA02562 46 endonuclease subun 79.2 62 0.0013 31.1 15.6 26 29-54 256-281 (562)
54 PF05557 MAD: Mitotic checkpoi 77.9 0.7 1.5E-05 46.9 0.0 32 156-187 187-218 (722)
55 PF08317 Spc7: Spc7 kinetochor 77.8 62 0.0013 30.3 13.8 141 90-255 151-296 (325)
56 PF08317 Spc7: Spc7 kinetochor 77.1 65 0.0014 30.2 15.7 87 75-178 182-268 (325)
57 KOG0946 ER-Golgi vesicle-tethe 76.6 54 0.0012 36.3 13.2 136 26-179 690-831 (970)
58 PF04156 IncA: IncA protein; 75.2 41 0.00088 28.3 9.8 69 22-90 82-150 (191)
59 KOG0971 Microtubule-associated 75.1 40 0.00087 37.8 11.9 115 85-215 397-511 (1243)
60 PF01608 I_LWEQ: I/LWEQ domain 74.1 5.1 0.00011 35.2 4.3 34 254-299 115-148 (152)
61 PF06818 Fez1: Fez1; InterPro 73.8 30 0.00065 31.9 9.2 73 43-124 32-106 (202)
62 PF05622 HOOK: HOOK protein; 71.5 1.3 2.8E-05 45.1 0.0 45 71-119 261-305 (713)
63 PF00769 ERM: Ezrin/radixin/mo 71.0 85 0.0018 28.8 11.6 53 159-218 174-233 (246)
64 KOG0250 DNA repair protein RAD 71.0 1.9E+02 0.0041 32.8 23.3 20 82-101 233-252 (1074)
65 PF08172 CASP_C: CASP C termin 70.3 23 0.0005 32.8 7.8 100 171-281 2-119 (248)
66 PRK12704 phosphodiesterase; Pr 68.3 51 0.0011 33.4 10.2 19 82-100 80-98 (520)
67 PRK03918 chromosome segregatio 67.7 1.5E+02 0.0032 30.3 25.5 11 212-222 373-383 (880)
68 PF08614 ATG16: Autophagy prot 66.9 22 0.00049 30.7 6.6 68 81-148 99-166 (194)
69 PRK09841 cryptic autophosphory 66.4 1.7E+02 0.0036 30.4 14.2 61 65-125 253-324 (726)
70 PF00261 Tropomyosin: Tropomyo 66.1 99 0.0021 27.6 23.7 44 256-299 184-227 (237)
71 PRK10246 exonuclease subunit S 65.8 2.1E+02 0.0044 31.2 31.8 78 165-244 721-798 (1047)
72 COG3096 MukB Uncharacterized p 65.7 1.7E+02 0.0037 33.0 14.0 161 94-271 372-536 (1480)
73 PF12718 Tropomyosin_1: Tropom 65.6 85 0.0018 26.7 13.6 61 77-137 14-74 (143)
74 KOG4674 Uncharacterized conser 65.0 3E+02 0.0066 32.9 24.9 111 11-122 620-741 (1822)
75 PF12325 TMF_TATA_bd: TATA ele 64.9 78 0.0017 26.7 9.2 68 23-94 18-85 (120)
76 PF13863 DUF4200: Domain of un 64.6 68 0.0015 25.3 8.9 63 32-94 36-98 (126)
77 PF10168 Nup88: Nuclear pore c 64.1 1.1E+02 0.0023 32.6 12.0 88 38-129 561-656 (717)
78 PF06705 SF-assemblin: SF-asse 63.2 1.1E+02 0.0025 27.3 19.1 198 49-248 5-215 (247)
79 PF09730 BicD: Microtubule-ass 63.2 1.7E+02 0.0036 31.6 13.2 74 19-96 344-417 (717)
80 PF05667 DUF812: Protein of un 62.9 2E+02 0.0043 30.1 14.3 106 153-268 327-432 (594)
81 PF05667 DUF812: Protein of un 62.7 2E+02 0.0044 30.0 17.8 38 161-198 447-484 (594)
82 KOG0244 Kinesin-like protein [ 62.2 48 0.001 36.6 9.3 122 158-299 464-602 (913)
83 PF06818 Fez1: Fez1; InterPro 62.2 1.3E+02 0.0029 27.8 15.5 155 108-288 27-185 (202)
84 PF07106 TBPIP: Tat binding pr 62.0 60 0.0013 27.3 8.1 61 23-95 74-134 (169)
85 PF10267 Tmemb_cc2: Predicted 61.1 1.3E+02 0.0027 30.2 11.3 118 25-177 209-326 (395)
86 KOG0250 DNA repair protein RAD 59.6 3.1E+02 0.0067 31.2 21.2 45 152-196 370-415 (1074)
87 PF05483 SCP-1: Synaptonemal c 59.6 2.7E+02 0.0059 30.6 16.9 142 32-202 538-688 (786)
88 TIGR03007 pepcterm_ChnLen poly 59.5 1.7E+02 0.0037 28.1 12.6 22 79-100 256-277 (498)
89 TIGR03007 pepcterm_ChnLen poly 59.5 1.7E+02 0.0037 28.1 15.9 44 160-203 253-296 (498)
90 PF10168 Nup88: Nuclear pore c 59.2 2.5E+02 0.0054 29.9 15.5 33 220-252 682-714 (717)
91 smart00806 AIP3 Actin interact 59.1 2.2E+02 0.0047 29.2 17.0 200 32-267 75-291 (426)
92 KOG0612 Rho-associated, coiled 58.8 3.5E+02 0.0075 31.5 24.2 22 266-287 746-767 (1317)
93 cd07591 BAR_Rvs161p The Bin/Am 57.8 85 0.0018 28.3 8.8 100 73-183 14-121 (224)
94 PHA02562 46 endonuclease subun 57.7 1.8E+02 0.004 28.0 20.2 22 160-181 298-319 (562)
95 PF09755 DUF2046: Uncharacteri 57.5 2E+02 0.0043 28.3 18.1 47 153-199 127-173 (310)
96 PRK09039 hypothetical protein; 57.5 1.8E+02 0.0039 27.8 16.7 7 185-191 193-199 (343)
97 PF08232 Striatin: Striatin fa 57.3 20 0.00043 30.2 4.5 40 256-295 33-72 (134)
98 PTZ00491 major vault protein; 55.7 2.7E+02 0.0059 30.9 13.4 43 186-228 789-839 (850)
99 TIGR01843 type_I_hlyD type I s 55.6 1.6E+02 0.0035 26.7 17.3 25 32-56 78-102 (423)
100 PF04799 Fzo_mitofusin: fzo-li 55.4 42 0.0009 30.3 6.4 24 74-97 117-140 (171)
101 PF14282 FlxA: FlxA-like prote 55.0 46 0.001 26.9 6.1 34 15-48 6-39 (106)
102 PF06657 Cep57_MT_bd: Centroso 54.8 37 0.00081 26.6 5.3 68 18-101 7-74 (79)
103 PF08826 DMPK_coil: DMPK coile 54.4 55 0.0012 25.1 6.0 23 73-95 35-57 (61)
104 PF05529 Bap31: B-cell recepto 53.5 80 0.0017 27.0 7.6 55 45-99 121-176 (192)
105 TIGR03752 conj_TIGR03752 integ 52.6 60 0.0013 33.4 7.7 69 38-120 55-124 (472)
106 TIGR01005 eps_transp_fam exopo 52.4 2.8E+02 0.006 28.4 13.8 32 33-64 185-216 (754)
107 smart00307 ILWEQ I/LWEQ domain 52.0 23 0.0005 32.3 4.3 38 249-299 159-196 (200)
108 PF05911 DUF869: Plant protein 50.9 3.6E+02 0.0078 29.3 13.7 100 74-180 593-692 (769)
109 PRK00106 hypothetical protein; 50.9 1.5E+02 0.0033 30.7 10.3 9 260-268 299-307 (535)
110 COG3883 Uncharacterized protei 50.7 2.4E+02 0.0051 27.2 13.7 151 16-178 19-182 (265)
111 PF13094 CENP-Q: CENP-Q, a CEN 50.6 1.5E+02 0.0032 24.8 9.5 70 24-93 16-85 (160)
112 PF10174 Cast: RIM-binding pro 50.2 3.7E+02 0.008 29.2 25.0 148 32-179 235-410 (775)
113 PF05701 WEMBL: Weak chloropla 50.1 2.8E+02 0.0062 27.9 22.6 42 160-201 280-321 (522)
114 PF05266 DUF724: Protein of un 49.3 2E+02 0.0043 25.8 11.2 53 72-124 126-185 (190)
115 PF13166 AAA_13: AAA domain 48.7 2.9E+02 0.0064 27.6 12.4 32 29-60 371-402 (712)
116 PTZ00446 vacuolar sorting prot 48.6 2.1E+02 0.0046 26.0 10.6 103 158-279 78-183 (191)
117 KOG4643 Uncharacterized coiled 48.5 1.2E+02 0.0026 34.5 9.6 91 11-120 154-244 (1195)
118 KOG0994 Extracellular matrix g 48.2 5.4E+02 0.012 30.5 15.9 21 75-95 1610-1630(1758)
119 PF11932 DUF3450: Protein of u 47.8 1.4E+02 0.003 26.7 8.5 78 121-198 12-93 (251)
120 COG0419 SbcC ATPase involved i 47.2 3.8E+02 0.0082 28.5 25.1 25 45-69 493-517 (908)
121 PF05483 SCP-1: Synaptonemal c 47.2 4.3E+02 0.0094 29.2 20.3 159 90-262 449-612 (786)
122 PRK10884 SH3 domain-containing 46.9 2.1E+02 0.0046 26.0 9.5 29 39-67 90-118 (206)
123 PF04871 Uso1_p115_C: Uso1 / p 46.8 1.8E+02 0.0039 24.7 10.5 35 133-170 80-114 (136)
124 PRK01156 chromosome segregatio 46.6 3.6E+02 0.0079 28.1 27.0 55 221-275 672-729 (895)
125 PF12718 Tropomyosin_1: Tropom 45.8 1.9E+02 0.0041 24.6 10.1 80 30-114 37-117 (143)
126 PF05791 Bacillus_HBL: Bacillu 45.5 1.5E+02 0.0033 25.8 8.2 71 29-102 111-181 (184)
127 PF13863 DUF4200: Domain of un 44.7 1.5E+02 0.0033 23.3 11.9 87 80-176 24-110 (126)
128 PF15272 BBP1_C: Spindle pole 44.5 84 0.0018 29.0 6.7 30 235-268 105-134 (196)
129 PF03148 Tektin: Tektin family 44.4 3E+02 0.0066 26.6 11.8 23 79-101 274-296 (384)
130 TIGR02680 conserved hypothetic 44.0 5.3E+02 0.011 29.2 19.2 64 240-303 336-402 (1353)
131 TIGR02680 conserved hypothetic 43.0 5.5E+02 0.012 29.1 15.1 40 111-150 332-371 (1353)
132 TIGR01843 type_I_hlyD type I s 42.5 2.7E+02 0.0058 25.4 16.2 11 233-243 315-325 (423)
133 TIGR03017 EpsF chain length de 41.6 3.1E+02 0.0066 25.8 15.4 159 70-297 164-349 (444)
134 PF12126 DUF3583: Protein of u 40.8 1.2E+02 0.0026 30.1 7.5 71 233-303 31-102 (324)
135 PRK10803 tol-pal system protei 40.7 50 0.0011 30.3 4.7 67 55-121 39-105 (263)
136 PRK11519 tyrosine kinase; Prov 39.3 4.6E+02 0.01 27.2 13.2 47 77-123 267-322 (719)
137 KOG0288 WD40 repeat protein Ti 39.1 1.8E+02 0.0039 30.2 8.6 63 48-111 12-81 (459)
138 KOG0980 Actin-binding protein 39.0 6.3E+02 0.014 28.7 17.2 167 33-209 429-600 (980)
139 PF10186 Atg14: UV radiation r 38.7 2.6E+02 0.0057 24.3 14.1 19 111-129 90-108 (302)
140 PF05557 MAD: Mitotic checkpoi 38.7 10 0.00022 38.8 0.0 36 25-60 69-104 (722)
141 PF01496 V_ATPase_I: V-type AT 38.1 1.6E+02 0.0034 30.6 8.2 30 65-94 26-55 (759)
142 PF12761 End3: Actin cytoskele 38.0 1.5E+02 0.0032 27.4 7.2 34 155-188 161-194 (195)
143 PF10267 Tmemb_cc2: Predicted 37.9 3.2E+02 0.007 27.4 10.0 50 226-282 265-318 (395)
144 PF07926 TPR_MLP1_2: TPR/MLP1/ 37.7 2.3E+02 0.005 23.3 14.1 23 156-178 107-129 (132)
145 KOG0977 Nuclear envelope prote 36.6 5.4E+02 0.012 27.2 20.7 104 73-176 109-219 (546)
146 PF10473 CENP-F_leu_zip: Leuci 36.5 2.9E+02 0.0063 24.1 14.0 127 30-174 12-139 (140)
147 PF06419 COG6: Conserved oligo 36.0 2.3E+02 0.005 29.1 9.0 68 55-125 26-93 (618)
148 PF10158 LOH1CR12: Tumour supp 35.5 2.8E+02 0.0062 23.7 9.8 78 42-129 27-104 (131)
149 PF06160 EzrA: Septation ring 35.4 5E+02 0.011 26.4 19.3 142 141-282 116-272 (560)
150 KOG0996 Structural maintenance 35.0 8E+02 0.017 28.7 25.8 62 28-89 813-877 (1293)
151 PF12522 UL73_N: Cytomegalovir 34.8 25 0.00055 23.8 1.4 14 4-17 13-26 (27)
152 PF12329 TMF_DNA_bd: TATA elem 34.5 1.2E+02 0.0026 23.4 5.3 24 228-251 3-26 (74)
153 PF03999 MAP65_ASE1: Microtubu 34.3 13 0.00029 37.6 0.0 34 160-193 141-174 (619)
154 PLN03229 acetyl-coenzyme A car 34.2 1.2E+02 0.0027 33.0 7.0 115 163-280 431-569 (762)
155 PF06120 Phage_HK97_TLTM: Tail 33.9 4.5E+02 0.0098 25.6 10.6 19 40-58 46-64 (301)
156 PF12325 TMF_TATA_bd: TATA ele 33.8 1.7E+02 0.0037 24.8 6.4 85 162-249 24-108 (120)
157 cd08784 Death_DRs Death Domain 33.6 33 0.00071 26.2 2.0 31 214-244 3-33 (79)
158 PF15619 Lebercilin: Ciliary p 33.3 3.6E+02 0.0078 24.2 14.0 32 146-177 124-155 (194)
159 KOG0243 Kinesin-like protein [ 33.1 7.9E+02 0.017 28.1 21.5 118 27-166 403-523 (1041)
160 PRK08307 stage III sporulation 33.0 3E+02 0.0065 23.8 8.0 111 186-309 33-165 (171)
161 PF08581 Tup_N: Tup N-terminal 32.5 2.5E+02 0.0054 22.3 6.8 52 38-99 28-79 (79)
162 PF02841 GBP_C: Guanylate-bind 31.9 2.9E+02 0.0062 25.4 8.1 62 29-90 230-297 (297)
163 PF09789 DUF2353: Uncharacteri 31.5 5.1E+02 0.011 25.5 11.0 142 32-178 137-317 (319)
164 KOG4809 Rab6 GTPase-interactin 31.5 1.9E+02 0.004 31.1 7.5 78 106-204 332-409 (654)
165 PF14197 Cep57_CLD_2: Centroso 31.5 2.4E+02 0.0053 21.7 7.7 64 47-124 3-66 (69)
166 PF05529 Bap31: B-cell recepto 31.3 1.9E+02 0.0041 24.8 6.5 67 109-175 122-189 (192)
167 PF04799 Fzo_mitofusin: fzo-li 30.9 42 0.0009 30.3 2.5 31 237-267 127-163 (171)
168 COG3206 GumC Uncharacterized p 30.4 5.1E+02 0.011 25.0 14.2 73 165-249 296-368 (458)
169 PF03962 Mnd1: Mnd1 family; I 30.2 3.9E+02 0.0085 23.7 9.7 105 17-122 51-166 (188)
170 PRK10929 putative mechanosensi 29.8 8.8E+02 0.019 27.6 20.9 86 38-123 68-162 (1109)
171 PRK00409 recombination and DNA 29.7 5.3E+02 0.011 27.6 10.6 15 25-39 517-531 (782)
172 KOG0804 Cytoplasmic Zn-finger 29.2 3.8E+02 0.0083 28.1 9.1 114 153-295 331-447 (493)
173 PF01442 Apolipoprotein: Apoli 29.0 2.9E+02 0.0063 21.8 14.6 17 249-265 171-187 (202)
174 PRK10884 SH3 domain-containing 28.9 2.2E+02 0.0047 25.9 6.7 42 237-278 100-141 (206)
175 PF09969 DUF2203: Uncharacteri 28.4 2.1E+02 0.0045 24.0 6.0 33 26-58 11-43 (120)
176 PTZ00464 SNF-7-like protein; P 27.4 4.8E+02 0.01 23.8 14.6 104 136-266 60-168 (211)
177 PF09738 DUF2051: Double stran 27.3 5.8E+02 0.012 24.7 11.2 71 80-164 108-178 (302)
178 PF07106 TBPIP: Tat binding pr 27.2 3.8E+02 0.0082 22.6 8.7 21 110-130 98-118 (169)
179 PF04508 Pox_A_type_inc: Viral 27.2 60 0.0013 21.2 2.1 21 238-269 2-22 (23)
180 TIGR02132 phaR_Bmeg polyhydrox 26.9 97 0.0021 28.8 4.2 44 157-200 82-125 (189)
181 COG0064 GatB Asp-tRNAAsn/Glu-t 26.6 2.7E+02 0.0058 28.9 7.6 106 127-236 337-449 (483)
182 PF08990 Docking: Erythronolid 26.5 96 0.0021 20.6 3.0 20 40-59 7-26 (27)
183 PRK09841 cryptic autophosphory 26.3 7.6E+02 0.016 25.7 11.5 36 31-66 256-291 (726)
184 PF03938 OmpH: Outer membrane 26.3 3.5E+02 0.0075 21.9 6.9 14 18-31 16-29 (158)
185 COG2433 Uncharacterized conser 26.1 5.3E+02 0.011 28.0 9.7 92 154-295 422-528 (652)
186 PF02050 FliJ: Flagellar FliJ 26.1 2.6E+02 0.0057 20.4 11.5 74 130-203 42-119 (123)
187 COG4026 Uncharacterized protei 26.0 2.9E+02 0.0064 27.0 7.3 57 36-99 150-206 (290)
188 PRK11638 lipopolysaccharide bi 26.0 1.2E+02 0.0026 29.3 4.8 49 240-291 182-231 (342)
189 PF08657 DASH_Spc34: DASH comp 25.9 3E+02 0.0064 26.0 7.2 38 32-69 177-214 (259)
190 PF07889 DUF1664: Protein of u 25.8 2.3E+02 0.005 24.3 6.0 57 142-201 45-101 (126)
191 TIGR01005 eps_transp_fam exopo 25.8 7.4E+02 0.016 25.5 12.3 70 24-93 284-368 (754)
192 TIGR02833 spore_III_AB stage I 25.7 4.4E+02 0.0096 22.8 8.1 111 186-309 32-164 (170)
193 PF15483 DUF4641: Domain of un 25.5 54 0.0012 33.6 2.5 21 110-130 423-443 (445)
194 PF15254 CCDC14: Coiled-coil d 24.9 9.2E+02 0.02 27.1 11.4 76 185-270 490-586 (861)
195 KOG4673 Transcription factor T 24.8 1E+03 0.022 26.8 18.1 48 139-189 469-523 (961)
196 TIGR00831 a_cpa1 Na+/H+ antipo 24.5 5E+02 0.011 26.0 8.9 65 155-220 451-516 (525)
197 PF13870 DUF4201: Domain of un 23.9 4.5E+02 0.0097 22.3 13.3 76 41-122 12-87 (177)
198 PF12072 DUF3552: Domain of un 23.9 5E+02 0.011 22.8 9.0 93 72-165 66-165 (201)
199 PF08100 Dimerisation: Dimeris 23.9 85 0.0018 22.9 2.7 39 194-232 7-47 (51)
200 PF05300 DUF737: Protein of un 23.9 5.6E+02 0.012 23.3 9.9 65 38-102 82-148 (187)
201 COG3206 GumC Uncharacterized p 23.8 6.7E+02 0.015 24.3 10.4 99 23-121 280-403 (458)
202 PF09548 Spore_III_AB: Stage I 23.8 4.6E+02 0.01 22.4 8.5 110 187-309 40-164 (170)
203 PF13874 Nup54: Nucleoporin co 23.5 3.5E+02 0.0077 22.6 6.6 50 31-82 33-82 (141)
204 KOG0018 Structural maintenance 23.3 1.2E+03 0.026 27.0 16.6 191 45-274 156-358 (1141)
205 PF14362 DUF4407: Domain of un 23.3 5.7E+02 0.012 23.3 10.7 13 165-177 243-255 (301)
206 PF06428 Sec2p: GDP/GTP exchan 23.2 3.5E+02 0.0076 22.3 6.4 34 65-98 3-37 (100)
207 COG2178 Predicted RNA-binding 23.2 2E+02 0.0043 27.0 5.5 65 168-247 3-67 (204)
208 PRK00888 ftsB cell division pr 23.2 2E+02 0.0043 23.4 5.0 53 162-214 28-84 (105)
209 KOG3976 Mitochondrial F1F0-ATP 23.1 2.1E+02 0.0047 27.5 5.8 29 39-67 180-208 (247)
210 smart00502 BBC B-Box C-termina 22.7 3.3E+02 0.0071 20.3 12.0 62 141-202 47-121 (127)
211 PLN03229 acetyl-coenzyme A car 22.6 1.1E+03 0.023 26.2 11.7 93 184-287 599-706 (762)
212 PF12240 Angiomotin_C: Angiomo 22.2 6.4E+02 0.014 23.7 8.5 140 84-251 3-150 (205)
213 PRK14143 heat shock protein Gr 22.2 6.5E+02 0.014 23.5 8.8 27 192-218 102-128 (238)
214 PRK15471 chain length determin 22.2 1.6E+02 0.0034 28.3 4.8 49 240-291 161-210 (325)
215 KOG3091 Nuclear pore complex, 22.1 1.5E+02 0.0032 31.1 4.9 53 225-281 336-395 (508)
216 KOG3088 Secretory carrier memb 22.0 74 0.0016 31.4 2.6 24 254-277 63-86 (313)
217 KOG0933 Structural maintenance 21.6 1.3E+03 0.028 26.8 23.9 104 80-183 744-865 (1174)
218 PF06730 FAM92: FAM92 protein; 21.3 5.4E+02 0.012 24.2 7.9 71 162-254 69-141 (219)
219 TIGR01010 BexC_CtrB_KpsE polys 21.1 6.8E+02 0.015 23.3 14.6 94 71-178 164-266 (362)
220 KOG4787 Uncharacterized conser 21.0 3.8E+02 0.0083 29.4 7.7 121 144-276 700-827 (852)
221 PRK10381 LPS O-antigen length 21.0 2E+02 0.0044 28.0 5.3 50 239-291 200-250 (377)
222 KOG2751 Beclin-like protein [S 20.8 9.5E+02 0.021 25.1 10.1 113 75-204 148-261 (447)
223 KOG0963 Transcription factor/C 20.7 1.1E+03 0.024 25.6 22.2 82 224-306 279-367 (629)
224 PF04111 APG6: Autophagy prote 20.7 7.4E+02 0.016 23.6 9.8 106 63-175 29-134 (314)
225 TIGR02231 conserved hypothetic 20.5 7.1E+02 0.015 24.6 9.0 101 168-281 71-171 (525)
226 PF00435 Spectrin: Spectrin re 20.4 3.1E+02 0.0067 19.1 7.0 83 108-195 4-86 (105)
227 PF05911 DUF869: Plant protein 20.4 1.1E+03 0.025 25.7 11.5 104 164-294 102-208 (769)
228 KOG4593 Mitotic checkpoint pro 20.3 1.2E+03 0.026 25.8 24.2 151 134-303 166-323 (716)
229 KOG0994 Extracellular matrix g 20.3 1.5E+03 0.033 27.1 19.8 60 30-89 1513-1572(1758)
230 KOG0239 Kinesin (KAR3 subfamil 20.3 1.1E+03 0.023 25.3 12.2 201 33-246 98-309 (670)
231 PF01813 ATP-synt_D: ATP synth 20.1 3.3E+02 0.0072 23.6 6.0 72 15-111 104-175 (196)
No 1
>PRK02224 chromosome segregation protein; Provisional
Probab=97.99 E-value=0.014 Score=58.73 Aligned_cols=132 Identities=18% Similarity=0.246 Sum_probs=89.3
Q ss_pred CCccccChhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhh
Q 021571 21 VPAREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRL 100 (310)
Q Consensus 21 ~~~~elDPLLkDL~EKK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL 100 (310)
+...++-.++.++.++.......+-.|..++.+++.++...+..... +.....++.....+...+++..+++
T Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~e~l~~~~~~--------~~~l~~l~~~~~~l~~~~~~~~e~l 532 (880)
T PRK02224 461 VEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEA--------EDRIERLEERREDLEELIAERRETI 532 (880)
T ss_pred CCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444457888888988888888899999999999888876665322 3333445555555555677777777
Q ss_pred hhhhhhHHHHHHHHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhcchhhhh
Q 021571 101 QASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHE 160 (310)
Q Consensus 101 ~as~~stekyl~eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~keL~eK~~sLkEhE 160 (310)
..-....+.+-.++..|++.+.-....++.--..+..+.--+..+-+++++-++-+++.+
T Consensus 533 e~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le 592 (880)
T PRK02224 533 EEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE 592 (880)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777888888998888777665554444444444456666666666555555555
No 2
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.88 E-value=0.0044 Score=70.08 Aligned_cols=192 Identities=26% Similarity=0.378 Sum_probs=129.7
Q ss_pred hHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhhHh
Q 021571 43 NVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLA 122 (310)
Q Consensus 43 NVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~stekyl~eLD~lRSQLs 122 (310)
.|.-+-..+++...+++.-++.+..|=-+|..+|..-+-++.|+..|++.|++..+...+-....-+.-.|+..||..|.
T Consensus 1091 ~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~le 1170 (1930)
T KOG0161|consen 1091 EVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLE 1170 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445556666666667778888888899999999999999999999999988888888888888889999998887
Q ss_pred HHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhcchhhhhhHhhhhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHHHH-H
Q 021571 123 ATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQ-T 201 (310)
Q Consensus 123 ~tqATAeaSaaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dIm~-A 201 (310)
-..-+-++..+... +.|.+.|..+++|+++++++.+-.+--...|.-|+..++..+=. .
T Consensus 1171 ee~~~~e~~~~~lr--------------------~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~ 1230 (1930)
T KOG0161|consen 1171 EETLDHEAQIEELR--------------------KKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLS 1230 (1930)
T ss_pred HHHHhHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 65544443333222 88999999999999999999988887777777777777665542 2
Q ss_pred HHHhcCCchhHHHHhhhccCcchHHhhhhhhccchhHhhhhhhhhHhhhhhcccchhHHHHHHH
Q 021571 202 IAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQLE 265 (310)
Q Consensus 202 vakag~~~~~El~kil~evspkn~e~inkll~~kD~eIakLrdeiri~SaHW~~ktKELEsQle 265 (310)
.++++..+-| +-+|.-+.-|..|++++.++..++..-..--.+...+|.+|+|
T Consensus 1231 ~~k~~~e~~~-----------k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~le 1283 (1930)
T KOG0161|consen 1231 SEKKDLEKKD-----------KKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLE 1283 (1930)
T ss_pred hhhccHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhH
Confidence 2222222222 3333444455666666666655543333333333334444443
No 3
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.84 E-value=0.041 Score=54.86 Aligned_cols=29 Identities=28% Similarity=0.550 Sum_probs=12.4
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHhhh
Q 021571 30 LKDLNEKKQSFRKNVVSLAAELKEVRTRL 58 (310)
Q Consensus 30 LkDL~EKK~sfRRNVvsLaaELKd~R~rL 58 (310)
+.+|......++..+..+-.+++.+...+
T Consensus 679 ~~~l~~~~~~l~~~l~~~~~~~~~~~~~l 707 (1179)
T TIGR02168 679 IEELEEKIEELEEKIAELEKALAELRKEL 707 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444443
No 4
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.33 E-value=0.21 Score=49.94 Aligned_cols=75 Identities=17% Similarity=0.282 Sum_probs=43.3
Q ss_pred cChhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhh
Q 021571 26 IDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRL 100 (310)
Q Consensus 26 lDPLLkDL~EKK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL 100 (310)
+..-+.++..+-..+...+..+.+++.+++..+...+.....-.......+.....++.++..+...+..-..++
T Consensus 682 l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~ 756 (1179)
T TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL 756 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777888888888888877776555544433322233344444555555555554444433333
No 5
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.18 E-value=0.33 Score=49.10 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=10.1
Q ss_pred HHHHhHhhHHHHHHhhHHHHHHHHHH
Q 021571 263 QLEKQRRADQELKKRVLKLEFCLQEA 288 (310)
Q Consensus 263 QlekqRR~dQElKkrVlkLEfclqEa 288 (310)
++++.+..-.++..++-+++-.+...
T Consensus 904 ~~~~l~~~~~~~~~~~~~l~~~~~~~ 929 (1164)
T TIGR02169 904 KIEELEAQIEKKRKRLSELKAKLEAL 929 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444333333
No 6
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.96 E-value=0.53 Score=47.64 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=9.1
Q ss_pred HHHHHHHHhHhhHHHHHHhhHH
Q 021571 259 ELESQLEKQRRADQELKKRVLK 280 (310)
Q Consensus 259 ELEsQlekqRR~dQElKkrVlk 280 (310)
+++.++.+.+..-++++.++-.
T Consensus 466 ~~~~~l~~~~~~l~~l~~~l~~ 487 (1164)
T TIGR02169 466 KYEQELYDLKEEYDRVEKELSK 487 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333
No 7
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.93 E-value=0.62 Score=50.38 Aligned_cols=89 Identities=11% Similarity=0.132 Sum_probs=47.7
Q ss_pred cChhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhh
Q 021571 26 IDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASAC 105 (310)
Q Consensus 26 lDPLLkDL~EKK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~ 105 (310)
++.++++|..+-.++-.+.-.+.+++++.+.++..-...-..-..-+...+.....++.++..+...+++...+|...-.
T Consensus 693 ~~~f~~~L~~~~~~~p~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~l~~~eip~l~~~l~~le~~l~~~~~~le~~~~ 772 (1311)
T TIGR00606 693 LQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQET 772 (1311)
T ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888888777655677777888888877776655432222222333333444444444444444444433333333
Q ss_pred hHHHHHHHH
Q 021571 106 TAEKYLMQL 114 (310)
Q Consensus 106 stekyl~eL 114 (310)
.-++...++
T Consensus 773 ~l~~~~~~~ 781 (1311)
T TIGR00606 773 LLGTIMPEE 781 (1311)
T ss_pred HHHHHHHhH
Confidence 333333333
No 8
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.92 E-value=0.54 Score=50.29 Aligned_cols=15 Identities=20% Similarity=0.366 Sum_probs=8.4
Q ss_pred hcccchhHHHHHHHH
Q 021571 252 HWKLKTKELESQLEK 266 (310)
Q Consensus 252 HW~~ktKELEsQlek 266 (310)
-|+.+.+.++.+++.
T Consensus 946 ~~~~~i~~le~~i~~ 960 (1163)
T COG1196 946 ELEREIERLEEEIEA 960 (1163)
T ss_pred HHHHHHHHHHHHHHh
Confidence 456666666655443
No 9
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.58 E-value=1.4 Score=47.25 Aligned_cols=76 Identities=25% Similarity=0.351 Sum_probs=53.4
Q ss_pred hhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhh
Q 021571 28 PLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQAS 103 (310)
Q Consensus 28 PLLkDL~EKK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~as 103 (310)
+-|..|.++-......+..+-.+++++.+.+.+-+.....-......++........++..+...+++-..++...
T Consensus 667 ~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 742 (1163)
T COG1196 667 RELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEEL 742 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788888888999999999999999988888887777776666666665555555555544444444444433
No 10
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.38 E-value=0.98 Score=46.40 Aligned_cols=127 Identities=22% Similarity=0.231 Sum_probs=88.2
Q ss_pred CCCCCCccccChhhhhh---HHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHH-
Q 021571 17 SSSSVPAREIDPLLKDL---NEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKT- 92 (310)
Q Consensus 17 ~sss~~~~elDPLLkDL---~EKK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~- 92 (310)
....+|..|+--+.+.| .-.+-.|..++--|-.|++++|.++...++.....=..-...+.+.-+.|.|++-+.-.
T Consensus 85 ~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~ 164 (546)
T KOG0977|consen 85 GIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRI 164 (546)
T ss_pred chhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHH
Confidence 34455666665554444 44788899999999999999999999998877654444455667777777777766533
Q ss_pred --HhhhhhhhhhhhhhHHHHHHHHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhh
Q 021571 93 --LEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKN 153 (310)
Q Consensus 93 --Leek~~QL~as~~stekyl~eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~keL~eK~ 153 (310)
|+|...-| ..|.+.||.+|..++.--|+-...-.-.|.+|-.|+.+|+-..
T Consensus 165 ~~le~e~~~L----------k~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~ 217 (546)
T KOG0977|consen 165 KALEDELKRL----------KAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLK 217 (546)
T ss_pred HHHHHHHHHH----------HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33333333 3566667777777766666666666778889999998887644
No 11
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.88 E-value=3.4 Score=44.90 Aligned_cols=88 Identities=11% Similarity=0.232 Sum_probs=43.8
Q ss_pred HHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhch------HHHHHHHHHHHhhhhhhhhhhhh--hHHHH
Q 021571 39 SFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNM------EDEICKLQKTLEERNGRLQASAC--TAEKY 110 (310)
Q Consensus 39 sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~M------E~Ei~kLqK~Leek~~QL~as~~--steky 110 (310)
.++..+..+-.++.++...|...+..+.+-......++.-.+.| ..||..+++.+++-...+..+.+ +.+..
T Consensus 748 ~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~s~~el 827 (1311)
T TIGR00606 748 ELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQV 827 (1311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHH
Confidence 34555555555555666556555555555444444443333333 55666666666655444443332 23334
Q ss_pred HHHHhhHhhhHhHHHH
Q 021571 111 LMQLDGLRSQLAATKA 126 (310)
Q Consensus 111 l~eLD~lRSQLs~tqA 126 (310)
-.+++.+..++..+..
T Consensus 828 e~ei~~~~~el~~l~~ 843 (1311)
T TIGR00606 828 NQEKQEKQHELDTVVS 843 (1311)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444433
No 12
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=95.84 E-value=0.065 Score=50.72 Aligned_cols=87 Identities=26% Similarity=0.394 Sum_probs=61.1
Q ss_pred ccccChhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhh
Q 021571 23 AREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQA 102 (310)
Q Consensus 23 ~~elDPLLkDL~EKK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~a 102 (310)
.+++=+-|+++-| .||+.+|+-| -|-.=++.|.-|=..+- .+.-.||+.+..+++.+.+|...+..
T Consensus 79 ~r~lk~~l~evEe---kyrkAMv~na-QLDNek~~l~yqvd~Lk----------d~lee~eE~~~~~~re~~eK~~elEr 144 (302)
T PF09738_consen 79 LRDLKDSLAEVEE---KYRKAMVSNA-QLDNEKSALMYQVDLLK----------DKLEELEETLAQLQREYREKIRELER 144 (302)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHh-hhchHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444 5999999876 36555666655544443 23446999999999999999988877
Q ss_pred hhhhHHHHHHHHhhHhhhHhH
Q 021571 103 SACTAEKYLMQLDGLRSQLAA 123 (310)
Q Consensus 103 s~~stekyl~eLD~lRSQLs~ 123 (310)
---.....-.|+|.||.+|..
T Consensus 145 ~K~~~d~L~~e~~~Lre~L~~ 165 (302)
T PF09738_consen 145 QKRAHDSLREELDELREQLKQ 165 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 766666677888888888863
No 13
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.78 E-value=1.3 Score=39.47 Aligned_cols=76 Identities=24% Similarity=0.370 Sum_probs=42.2
Q ss_pred hhhhhHHHHHHHHHhHHHHHHHHHHHHhhhh--------------hhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHh
Q 021571 29 LLKDLNEKKQSFRKNVVSLAAELKEVRTRLA--------------SQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLE 94 (310)
Q Consensus 29 LLkDL~EKK~sfRRNVvsLaaELKd~R~rLa--------------sQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Le 94 (310)
.+.+++.-|-.+--.+-.+-.|+.+.|.++. .--..+-.++..|-..+.+..++.+|+.-+.+--+
T Consensus 62 ~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~he 141 (312)
T PF00038_consen 62 QIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHE 141 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhh
Confidence 3444544444444444455555555555443 33345556666667777777777777776666555
Q ss_pred hhhhhhhhhh
Q 021571 95 ERNGRLQASA 104 (310)
Q Consensus 95 ek~~QL~as~ 104 (310)
+.-..|++.+
T Consensus 142 eEi~~L~~~~ 151 (312)
T PF00038_consen 142 EEIEELREQI 151 (312)
T ss_dssp HHHHTTSTT-
T ss_pred hhhhhhhhcc
Confidence 5555555444
No 14
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.44 E-value=3.3 Score=41.63 Aligned_cols=97 Identities=22% Similarity=0.297 Sum_probs=58.3
Q ss_pred cChhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhh
Q 021571 26 IDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASAC 105 (310)
Q Consensus 26 lDPLLkDL~EKK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~ 105 (310)
+.--++++..+...+......+-++++++..++..-++.|..+.-.+ ++. -..+|.++..+...+.+...++.--++
T Consensus 214 le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~--~~~-r~~Le~ei~~le~e~~e~~~~l~~l~~ 290 (650)
T TIGR03185 214 LEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDL--FEE-REQLERQLKEIEAARKANRAQLRELAA 290 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445556666666666777777777777777777777776655432 222 235677777777777777777764443
Q ss_pred hHH--HHH-HHHhhHhhhHhHHH
Q 021571 106 TAE--KYL-MQLDGLRSQLAATK 125 (310)
Q Consensus 106 ste--kyl-~eLD~lRSQLs~tq 125 (310)
..= -|+ +-++.++.|+..-+
T Consensus 291 ~~~p~~l~~~ll~~~~~q~~~e~ 313 (650)
T TIGR03185 291 DPLPLLLIPNLLDSTKAQLQKEE 313 (650)
T ss_pred ccCCHhhhHHHHHHHHHHHHHHH
Confidence 221 122 45556666665544
No 15
>PRK02224 chromosome segregation protein; Provisional
Probab=95.30 E-value=3.9 Score=41.61 Aligned_cols=18 Identities=33% Similarity=0.647 Sum_probs=7.7
Q ss_pred HHHHHHHHHHhhhhhhhh
Q 021571 46 SLAAELKEVRTRLASQEQ 63 (310)
Q Consensus 46 sLaaELKd~R~rLasQEq 63 (310)
.+..+++....++...+.
T Consensus 255 ~l~~~~~~l~~~i~~~e~ 272 (880)
T PRK02224 255 TLEAEIEDLRETIAETER 272 (880)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 16
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.23 E-value=2.1 Score=38.21 Aligned_cols=137 Identities=18% Similarity=0.276 Sum_probs=62.8
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhhhHHH
Q 021571 30 LKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEK 109 (310)
Q Consensus 30 LkDL~EKK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~stek 109 (310)
|.+||.+=.+|=--|-.|=++=+.....+..-......++ .. -....|.||..|.+.+.+-..+-..-..-...
T Consensus 6 L~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~-----~~-~~~~ye~el~~lr~~id~~~~eka~l~~e~~~ 79 (312)
T PF00038_consen 6 LQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEV-----SR-IKEMYEEELRELRRQIDDLSKEKARLELEIDN 79 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HH-HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccC-----cc-cccchhhHHHHhHHhhhhHHHHhhHHhhhhhh
Confidence 4455655555555555554444444333332222221111 11 11224555555555554444333333333444
Q ss_pred HHHHHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhcchhhhhhHhhhhHHHHHhHHHHHhh
Q 021571 110 YLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQA 179 (310)
Q Consensus 110 yl~eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~LgEQLD~LQKdLqa 179 (310)
+..+++++|.++.... +-=..+.-....|-+.+++-+..-..=+-++..|.++|+-+.+.++.
T Consensus 80 l~~e~~~~r~k~e~e~-------~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~hee 142 (312)
T PF00038_consen 80 LKEELEDLRRKYEEEL-------AERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEE 142 (312)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhh
Confidence 5555555555554431 11123333444455666666665566666666666666666655543
No 17
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=94.70 E-value=9.6 Score=43.04 Aligned_cols=202 Identities=25% Similarity=0.287 Sum_probs=94.1
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHH-----hhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHH-------HHH
Q 021571 47 LAAELKEVRTRLASQEQCFVKET-----LTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYL-------MQL 114 (310)
Q Consensus 47 LaaELKd~R~rLasQEq~~akEt-----~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~stekyl-------~eL 114 (310)
+.+||.++..+|.++++.+-++= ..-++++.++.--|++..+|...+.++-++|. .+.++. .++
T Consensus 466 ~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele----~~q~~~~~~~~~~~kv 541 (1317)
T KOG0612|consen 466 MDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELE----DAQKKNDNAADSLEKV 541 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhH
Confidence 78899999999999888887521 11234444444434333333333333333322 123332 334
Q ss_pred hhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhcchhhhhhHhhhhHHHHHhHHHHHhhhhhhHHhHhHH---H
Q 021571 115 DGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDE---V 191 (310)
Q Consensus 115 D~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~LgEQLD~LQKdLqaRE~SQkQLKDe---V 191 (310)
..+|-+|..+.. ++.|.++... .|....+++...-.++.+ .+.-+++-+..|+.+...-.=-.++++.+ .
T Consensus 542 ~~~rk~le~~~~--d~~~e~~~~~--kl~~~~~e~~~~iq~~~e---~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~ 614 (1317)
T KOG0612|consen 542 NSLRKQLEEAEL--DMRAESEDAG--KLRKHSKELSKQIQQELE---ENRDLEDKLSLLEESKSKLSKENKKLRSELEKE 614 (1317)
T ss_pred HHHHHHHHHhhh--hhhhhHHHHh--hHhhhhhhhhHHHHHHhh---ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555544332 3333333222 233333333333333332 45555666666665544333333444443 2
Q ss_pred HHHHHHHHHHHHHhc----------CCchhHHHHhhhccCcchHHhhhhhhccchhHhhhhhhhhHhhhhhcccchhHHH
Q 021571 192 FRIEQDIMQTIAKAG----------VNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELE 261 (310)
Q Consensus 192 lRIE~dIm~Avakag----------~~~~~El~kil~evspkn~e~inkll~~kD~eIakLrdeiri~SaHW~~ktKELE 261 (310)
.+-.++|-+.++-+. ....++++|+.+ .---|-|. |.-.-.+ -+-+||..+-|.++
T Consensus 615 ~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e-l~r~~~e~-----------~~~~ek~--~~e~~~e~~lk~~q 680 (1317)
T KOG0612|consen 615 RRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEE-LKRENQER-----------ISDSEKE--ALEIKLERKLKMLQ 680 (1317)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH-HHHHHHHH-----------HHHHHHH--HHHHHHHHHHHHHH
Confidence 233333333332221 233455555443 22222222 2222222 56788999988888
Q ss_pred HHHHHhHhhHHH
Q 021571 262 SQLEKQRRADQE 273 (310)
Q Consensus 262 sQlekqRR~dQE 273 (310)
.+++.-+-.-+.
T Consensus 681 ~~~eq~~~E~~~ 692 (1317)
T KOG0612|consen 681 NELEQENAEHHR 692 (1317)
T ss_pred HHHHHHHHHHHH
Confidence 888765544333
No 18
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.47 E-value=6.9 Score=40.45 Aligned_cols=53 Identities=26% Similarity=0.428 Sum_probs=42.8
Q ss_pred hhHhhhhhcccchhHHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHhhHHHHH
Q 021571 245 EIKIMSAHWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQR 297 (310)
Q Consensus 245 eiri~SaHW~~ktKELEsQlekqRR~dQElKkrVlkLEfclqEaRsqtrKlQr 297 (310)
+++-..+||..=--.|.-..|..++--++|+.++..+|=++||-|++--||+.
T Consensus 347 ~lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ 399 (546)
T PF07888_consen 347 ELKEGRSQWAQEKQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEK 399 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666788865444666667888888899999999999999999999888875
No 19
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.24 E-value=7.8 Score=40.10 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=24.5
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHHhhHhhhHhHHHHhhHhh
Q 021571 91 KTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADAS 131 (310)
Q Consensus 91 K~Leek~~QL~as~~stekyl~eLD~lRSQLs~tqATAeaS 131 (310)
.+|.+...++......+.++..|++.|+.||..++....||
T Consensus 262 ~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe~lqaS 302 (546)
T PF07888_consen 262 QRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQEQLQAS 302 (546)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444556677888888888777766555
No 20
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=94.23 E-value=6.6 Score=39.24 Aligned_cols=71 Identities=14% Similarity=0.172 Sum_probs=42.7
Q ss_pred hhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhh----------hHHHHHHHHhhHhhhHhHHH
Q 021571 56 TRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASAC----------TAEKYLMQLDGLRSQLAATK 125 (310)
Q Consensus 56 ~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~----------stekyl~eLD~lRSQLs~tq 125 (310)
.++..---.|.+|-..++.+++....+++-+..+.+...+-...+.--.- ...++-.+|..+..++....
T Consensus 289 ~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~ 368 (569)
T PRK04778 289 ERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEIT 368 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445678888888888888888888877776654433333322222 24445566666666666433
Q ss_pred H
Q 021571 126 A 126 (310)
Q Consensus 126 A 126 (310)
.
T Consensus 369 ~ 369 (569)
T PRK04778 369 E 369 (569)
T ss_pred H
Confidence 3
No 21
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=93.04 E-value=6.6 Score=41.14 Aligned_cols=71 Identities=24% Similarity=0.382 Sum_probs=41.7
Q ss_pred HHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHH----------------------HhhhchHHHHHHHHHHHh
Q 021571 37 KQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAE----------------------MKAKNMEDEICKLQKTLE 94 (310)
Q Consensus 37 K~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE----------------------~kak~ME~Ei~kLqK~Le 94 (310)
++.=|.++.+|---|++-|..-++-|..+..|--.|+.+| .|.+.||.|+.+|+..|.
T Consensus 483 Rq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk 562 (697)
T PF09726_consen 483 RQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELK 562 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666665566555555555555555555544332 345567777777777777
Q ss_pred hhhhhhhhhhhhH
Q 021571 95 ERNGRLQASACTA 107 (310)
Q Consensus 95 ek~~QL~as~~st 107 (310)
.+.+|++.--...
T Consensus 563 ~kee~~~~~e~~~ 575 (697)
T PF09726_consen 563 QKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHH
Confidence 7777766544433
No 22
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=92.36 E-value=13 Score=37.18 Aligned_cols=241 Identities=20% Similarity=0.236 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhhHhHH
Q 021571 45 VSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAAT 124 (310)
Q Consensus 45 vsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~stekyl~eLD~lRSQLs~t 124 (310)
+.+..++++.+.++..=...... ..=+.|+.+...+++.|..|...|+--..--...-....++-..|+.++.+...+
T Consensus 252 ~~i~~~i~~l~~~i~~~~~~l~~--l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l 329 (569)
T PRK04778 252 LDIEKEIQDLKEQIDENLALLEE--LDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKEL 329 (569)
T ss_pred CChHHHHHHHHHHHHHHHHHHHh--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 45667777777766553332221 1225567777777777777766665433222222222222222233333333222
Q ss_pred HHhhHhhHHh----------HHHHHHHHHHHHhhhhhhhcchhhhhhHhhhhHHHHHhHHHHHhhhhhhHHhHhHHHHHH
Q 021571 125 KATADASAAS----------AQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRI 194 (310)
Q Consensus 125 qATAeaSaaS----------AqsaqlqCl~L~keL~eK~~sLkEhE~rV~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRI 194 (310)
..--+--..| ....+=+.-.+-+.+.+-...+.++......+.++++.+.+.+..=+-.|..+++.+-.+
T Consensus 330 ~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~L 409 (569)
T PRK04778 330 KEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGL 409 (569)
T ss_pred HHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222221222 344444455555555555555666666667777777777777777777788888888888
Q ss_pred HHHHHHHHHHhcC--CchhHHHHhhhc-cCcchHHhhhhhhccchhHhhhhhhhhHhhhhhc---ccchhHHHHHHHHhH
Q 021571 195 EQDIMQTIAKAGV--NKDCELRKLLDE-VSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHW---KLKTKELESQLEKQR 268 (310)
Q Consensus 195 E~dIm~Avakag~--~~~~El~kil~e-vspkn~e~inkll~~kD~eIakLrdeiri~SaHW---~~ktKELEsQlekqR 268 (310)
..+..+|-.+... .+-.++...+.. --|.--+..-..+..-.++|.+|..+|.=-.-+- ...-.+.+..++.-.
T Consensus 410 rk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~ 489 (569)
T PRK04778 410 RKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEEKPINMEAVNRLLEEATEDVETLE 489 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 8888888766542 222223222222 1343334444444444566666666554200000 001233344444444
Q ss_pred hhHHHHHHhhHHHHHHHHH
Q 021571 269 RADQELKKRVLKLEFCLQE 287 (310)
Q Consensus 269 R~dQElKkrVlkLEfclqE 287 (310)
..-.+|-.-+..+|-.+|.
T Consensus 490 ~q~~dL~~~a~~lE~~Iqy 508 (569)
T PRK04778 490 EETEELVENATLTEQLIQY 508 (569)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555666667777777777
No 23
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=91.89 E-value=0.047 Score=57.05 Aligned_cols=222 Identities=27% Similarity=0.359 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhhHh
Q 021571 43 NVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLA 122 (310)
Q Consensus 43 NVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~stekyl~eLD~lRSQLs 122 (310)
.+..|-..+|+..+++..-+.-+.-|-..|.-||..-+.|..|+-.|...|++..+.-.|..-.--+.=.||..||.+|.
T Consensus 33 ~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee~~~~t~aq~E~~kkrE~El~~Lrr~LE 112 (859)
T PF01576_consen 33 LRAQLQKKIKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEEAGGATQAQIELNKKREAELAKLRRDLE 112 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHhhHHHHHHHHHHHHHHHHHHH
Confidence 45556678889999999988999999999999999999999999999999988777655444444445589999999997
Q ss_pred HHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhcch-hhhhhHhhhhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHHHHH
Q 021571 123 ATKATADASAASAQSAQLQCLALVKELDEKNSSL-KEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQT 201 (310)
Q Consensus 123 ~tqATAeaSaaSAqsaqlqCl~L~keL~eK~~sL-kEhE~rV~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dIm~A 201 (310)
-+....++..+ .| +-|-+.|..|.+|+|++++.-..=+-.-.+|..||-.+-.++ +.
T Consensus 113 e~~~~~e~~~~---------------------~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l-~~ 170 (859)
T PF01576_consen 113 EANLQHEATLA---------------------ELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQL-DS 170 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHH---------------------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HH
Confidence 65554444332 12 568999999999999999998887777778888887777766 44
Q ss_pred HHHhcCCchhHHHHh---hhccCcchHHhhhhhhccchhHhhhhhhhh----------HhhhhhcccchhHHHHHHHHhH
Q 021571 202 IAKAGVNKDCELRKL---LDEVSPKNFERINKLLVVKDEEIHKLKDEI----------KIMSAHWKLKTKELESQLEKQR 268 (310)
Q Consensus 202 vakag~~~~~El~ki---l~evspkn~e~inkll~~kD~eIakLrdei----------ri~SaHW~~ktKELEsQlekqR 268 (310)
+.++..+.+--..++ |.++.-+ ++.+++.++-=....++|..|| .--...+...-.-|++||+--+
T Consensus 171 ~~k~k~~~Ek~~K~lE~qL~El~~k-lee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk 249 (859)
T PF01576_consen 171 LQKAKQEAEKKRKQLEAQLNELQAK-LEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELK 249 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 445543332222111 1122111 2222222221112222333332 2223333333445788888766
Q ss_pred hhHHHHHHhhHHHHHHHHH
Q 021571 269 RADQELKKRVLKLEFCLQE 287 (310)
Q Consensus 269 R~dQElKkrVlkLEfclqE 287 (310)
+.-++-.+....|+--++.
T Consensus 250 ~~leeEtr~k~~L~~~l~~ 268 (859)
T PF01576_consen 250 RQLEEETRAKQALEKQLRQ 268 (859)
T ss_dssp -------------------
T ss_pred HHHHhHhhhhhhhHHHHHH
Confidence 6655555554455444433
No 24
>PRK04863 mukB cell division protein MukB; Provisional
Probab=91.64 E-value=29 Score=39.58 Aligned_cols=81 Identities=23% Similarity=0.352 Sum_probs=49.4
Q ss_pred HhHhHHHHHHHHHHHHHHHHhc--CCchhHHHHhhhccCcchHHhhhhhhccchhHhhhhhh--hhHhhh---hhcccch
Q 021571 185 KQLKDEVFRIEQDIMQTIAKAG--VNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKD--EIKIMS---AHWKLKT 257 (310)
Q Consensus 185 kQLKDeVlRIE~dIm~Avakag--~~~~~El~kil~evspkn~e~inkll~~kD~eIakLrd--eiri~S---aHW~~kt 257 (310)
.++..++...|+...++=+... ......+..+...|+|.+--+--+ ..|++ +.+++. +-|+.+-
T Consensus 452 ee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 522 (1486)
T PRK04863 452 QEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVAR---------ELLRRLREQRHLAEQLQQLRMRL 522 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHH---------HHHHHhHHHHHHHHhhHHHHHHH
Confidence 4455556666665555444433 345667777888888877543222 22221 233333 4688999
Q ss_pred hHHHHHHHHhHhhHHHH
Q 021571 258 KELESQLEKQRRADQEL 274 (310)
Q Consensus 258 KELEsQlekqRR~dQEl 274 (310)
.+||..++.|+++.+=+
T Consensus 523 ~~l~~~~~~q~~~~~~~ 539 (1486)
T PRK04863 523 SELEQRLRQQQRAERLL 539 (1486)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998876533
No 25
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=91.56 E-value=3 Score=39.51 Aligned_cols=72 Identities=25% Similarity=0.208 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhcchhhhhhH
Q 021571 83 EDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDR 162 (310)
Q Consensus 83 E~Ei~kLqK~Leek~~QL~as~~stekyl~eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~keL~eK~~sLkEhE~r 162 (310)
..||....+.+++...||.......+..-.+...++++++.++. .-+++.....+|
T Consensus 217 ~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~----------------------~~~~~r~~t~~E-- 272 (312)
T smart00787 217 LQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK----------------------KLEQCRGFTFKE-- 272 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHhcCCCCHHH--
Confidence 33444444445555555555444444444444444444433222 112233344333
Q ss_pred hhhhHHHHHhHHHHHh
Q 021571 163 VTRLGQQLDNLQKDLQ 178 (310)
Q Consensus 163 V~~LgEQLD~LQKdLq 178 (310)
|++|..+++.||+-+-
T Consensus 273 i~~Lk~~~~~Le~l~g 288 (312)
T smart00787 273 IEKLKEQLKLLQSLTG 288 (312)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 6778888888877543
No 26
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=91.51 E-value=3.4 Score=37.07 Aligned_cols=93 Identities=28% Similarity=0.406 Sum_probs=74.4
Q ss_pred hchHHHHHHHHHHHhhhhhhhhhhhhhHH-------HHHHHHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhhhhhh
Q 021571 80 KNMEDEICKLQKTLEERNGRLQASACTAE-------KYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEK 152 (310)
Q Consensus 80 k~ME~Ei~kLqK~Leek~~QL~as~~ste-------kyl~eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~keL~eK 152 (310)
..+|.||+..+.-+++-..+|..+-+... +-..++..|+.-|..++.+.+..-..+..+| .+|.+|
T Consensus 70 eqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ-------~el~eK 142 (188)
T PF05335_consen 70 EQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQ-------QELAEK 142 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Confidence 46788888888888888888877655444 3557777777777777777776666666665 578999
Q ss_pred hcchhhhhhHhhhhHHHHHhHHHHHhh
Q 021571 153 NSSLKEHEDRVTRLGQQLDNLQKDLQA 179 (310)
Q Consensus 153 ~~sLkEhE~rV~~LgEQLD~LQKdLqa 179 (310)
+..|..=..||..|..||.....|++.
T Consensus 143 ~qLLeaAk~Rve~L~~QL~~Ar~D~~~ 169 (188)
T PF05335_consen 143 TQLLEAAKRRVEELQRQLQAARADYEK 169 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999874
No 27
>PRK11637 AmiB activator; Provisional
Probab=91.46 E-value=13 Score=35.41 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=13.8
Q ss_pred HHHHHHhcCCchhHHHHhhhccCcchHHh
Q 021571 199 MQTIAKAGVNKDCELRKLLDEVSPKNFER 227 (310)
Q Consensus 199 m~Avakag~~~~~El~kil~evspkn~e~ 227 (310)
+.+..+.|.. + -|.=|++.-+|..|.+
T Consensus 130 lra~Y~~g~~-~-~l~vLl~a~~~~~~~r 156 (428)
T PRK11637 130 LDAAFRQGEH-T-GLQLILSGEESQRGER 156 (428)
T ss_pred HHHHHHcCCC-c-HHHHHhcCCChhHHHH
Confidence 5566666632 2 2444555555545543
No 28
>PRK09039 hypothetical protein; Validated
Probab=91.43 E-value=13 Score=35.33 Aligned_cols=30 Identities=27% Similarity=0.367 Sum_probs=18.2
Q ss_pred hhhhhhhcchhhhhhHhhhhHHHHHhHHHH
Q 021571 147 KELDEKNSSLKEHEDRVTRLGQQLDNLQKD 176 (310)
Q Consensus 147 keL~eK~~sLkEhE~rV~~LgEQLD~LQKd 176 (310)
.+|.+......|---.|..|..|+..|...
T Consensus 123 ~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q 152 (343)
T PRK09039 123 QELDSEKQVSARALAQVELLNQQIAALRRQ 152 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 556665555555555666666666666554
No 29
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=91.15 E-value=0.063 Score=56.15 Aligned_cols=223 Identities=22% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHH
Q 021571 65 FVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLA 144 (310)
Q Consensus 65 ~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~stekyl~eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~ 144 (310)
+-..+.++..+|.+.|.+|.++..|+..+++-+.++........++-.|+++|..+|.-...+.....-.-.+...|.--
T Consensus 168 l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLee 247 (859)
T PF01576_consen 168 LDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEE 247 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566778889999999999999999999999999999999999999999999999987766655444433444445445
Q ss_pred HHhhhhhhhcchhhhhhHhhhhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHHHHHHHHhcCCchhHHHHhhhccCcch
Q 021571 145 LVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKN 224 (310)
Q Consensus 145 L~keL~eK~~sLkEhE~rV~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dIm~Avakag~~~~~El~kil~evspkn 224 (310)
+-..|++-+..-.-=.-.+..+...++.|...+..=.-+-..|...|-+...+|.++-.|....... ...-|.+.-
T Consensus 248 lk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~-~~EelEeaK--- 323 (859)
T PF01576_consen 248 LKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQ-RTEELEEAK--- 323 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhh-hHHHHHHHH---
Confidence 5555555443333333344455555555544443222233333333444555555544443221111 000000000
Q ss_pred HHhhhhhhccchhHhhhhhhhhHhhhhhcccch-------hHHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHhhHHHH
Q 021571 225 FERINKLLVVKDEEIHKLKDEIKIMSAHWKLKT-------KELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQ 296 (310)
Q Consensus 225 ~e~inkll~~kD~eIakLrdeiri~SaHW~~kt-------KELEsQlekqRR~dQElKkrVlkLEfclqEaRsqtrKlQ 296 (310)
.++++-|.--.+.+. +...-.+-|+-.- ..+-.+|++++..-.+|-|+.-+++=+|.+.+.....++
T Consensus 324 -KkL~~~L~el~e~le----~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~ 397 (859)
T PF01576_consen 324 -KKLERKLQELQEQLE----EANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQ 397 (859)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred -HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 011111111111111 1111122232221 234467888888888999999999999998887766554
No 30
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=90.65 E-value=19 Score=35.73 Aligned_cols=94 Identities=18% Similarity=0.327 Sum_probs=52.4
Q ss_pred HHHHhHHHHHHHHHHHHhhhhhh----hhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhh-------hhhhhH
Q 021571 39 SFRKNVVSLAAELKEVRTRLASQ----EQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQ-------ASACTA 107 (310)
Q Consensus 39 sfRRNVvsLaaELKd~R~rLasQ----Eq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~-------as~~st 107 (310)
-++--+..+.+|++.-|.+|..- ...|.-++..+..-.-+.++|.+-+..|...+...++-.. ..+...
T Consensus 113 ~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~~~~~~~~~~~~fl~rtl~~ 192 (511)
T PF09787_consen 113 VLKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALKREDGNAITAVVEFLKRTLKK 192 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 34444555788888888877765 4445555554444444446666666655554443333221 112222
Q ss_pred H-----------------HHHHHHhhHhhhHhHHHHhhHhhH
Q 021571 108 E-----------------KYLMQLDGLRSQLAATKATADASA 132 (310)
Q Consensus 108 e-----------------kyl~eLD~lRSQLs~tqATAeaSa 132 (310)
+ .|+.+..++-.++...++..+..-
T Consensus 193 e~~~~~L~~~~~A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~ 234 (511)
T PF09787_consen 193 EIERQELEERPKALRHYIEYLRESGELQEQLELLKAEGESEE 234 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 2 366667777778877777766543
No 31
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=89.93 E-value=34 Score=37.44 Aligned_cols=41 Identities=22% Similarity=0.449 Sum_probs=25.9
Q ss_pred hhhhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHHHHHHHHhc
Q 021571 163 VTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAG 206 (310)
Q Consensus 163 V~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dIm~Avakag 206 (310)
...+-.|++.++..++++.- +++.+.-.++.+.-..++..|
T Consensus 727 ~~~~d~~i~~i~~~i~~~~~---~~~~~~~~le~~~~~eL~~~G 767 (1201)
T PF12128_consen 727 EAELDEQIEQIKQEIAAAKQ---EAKEQLKELEQQYNQELAGKG 767 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhCC
Confidence 34455566666666666543 566677778888877775544
No 32
>PRK11637 AmiB activator; Provisional
Probab=89.66 E-value=19 Score=34.34 Aligned_cols=57 Identities=19% Similarity=0.247 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhh
Q 021571 46 SLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQA 102 (310)
Q Consensus 46 sLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~a 102 (310)
.+..+|+.+...|..-++.+..=...-...+.+....+.+|..+++.++....+|..
T Consensus 72 ~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~ 128 (428)
T PRK11637 72 SLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAA 128 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444333333333222223445556666666666666666666555533
No 33
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=89.62 E-value=2.2 Score=42.34 Aligned_cols=203 Identities=24% Similarity=0.330 Sum_probs=53.3
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhh--hhhhhh----h
Q 021571 31 KDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERN--GRLQAS----A 104 (310)
Q Consensus 31 kDL~EKK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~--~QL~as----~ 104 (310)
.+|++-|..+-..+.+|..++++++..|..|.....+.--.+ ..++..--....--- .--.++ .
T Consensus 74 ~~ldevk~h~d~~~~~l~~~i~~lk~~l~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 143 (424)
T PF03915_consen 74 EPLDEVKKHIDSGIGGLSEEIEELKQELDEQQETILQRVKER----------QQSAAKPVARPAAAPPPSSAPSSSSSPQ 143 (424)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccchhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hhhhcccccccccCCCCCcccccccCcC
Confidence 346777888888999999999999999998877663221111 111110000000000 000000 0
Q ss_pred hhHHHHHHHHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhhhhh-------------hhcchhhhhhHhhhhHHHHH
Q 021571 105 CTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDE-------------KNSSLKEHEDRVTRLGQQLD 171 (310)
Q Consensus 105 ~stekyl~eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~keL~e-------------K~~sLkEhE~rV~~LgEQLD 171 (310)
......++|+.+||.+|++.+.+-.+.........--|..-++.+.. =+++-++......+|-.++|
T Consensus 144 ~~~~~~~~Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~~~k~~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVd 223 (424)
T PF03915_consen 144 STSKSDLKEVQSLRRELAVLRQLYSEFQSEVKESISSIREKIKKVKSASTNASGDSNRAYMESGKKKLSEESDRLLTKVD 223 (424)
T ss_dssp --------------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111478999999999999888777666665555544443333222 01122233333444444444
Q ss_pred hHHHHHhhhhhhHHhHhHHHHHHHHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhhccchhHhhhhhhhhHhhhh
Q 021571 172 NLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSA 251 (310)
Q Consensus 172 ~LQKdLqaRE~SQkQLKDeVlRIE~dIm~Avakag~~~~~El~kil~evspkn~e~inkll~~kD~eIakLrdeiri~Sa 251 (310)
.||--.+ +||..| +.-| --++|+.++.+.+.+.--..++.++.+-|..+-+
T Consensus 224 DLQD~VE-------~LRkDV-----------~~Rg-----------vRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp 274 (424)
T PF03915_consen 224 DLQDLVE-------DLRKDV-----------VQRG-----------VRPSPKQLETVAKDISRASKELKKMKEYIKTEKP 274 (424)
T ss_dssp HHHHHHH-------HHHHHH-----------HHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-------HHHHHH-----------HHcC-----------CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 4443332 222222 1111 1367889999999999999999999999999999
Q ss_pred hcccchhHHHHHHHHhHhhHHHHH
Q 021571 252 HWKLKTKELESQLEKQRRADQELK 275 (310)
Q Consensus 252 HW~~ktKELEsQlekqRR~dQElK 275 (310)
+|+ |-.|+.|++--+-.|.|+
T Consensus 275 ~Wk---KiWE~EL~~V~eEQqfL~ 295 (424)
T PF03915_consen 275 IWK---KIWESELQKVCEEQQFLK 295 (424)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHHHHHHHHHH
Confidence 996 566777776655555443
No 34
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=89.43 E-value=25 Score=35.20 Aligned_cols=34 Identities=18% Similarity=0.370 Sum_probs=19.1
Q ss_pred hhhHhhhhHHHHHhHHHHHhhhhhhHHhHhHHHH
Q 021571 159 HEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVF 192 (310)
Q Consensus 159 hE~rV~~LgEQLD~LQKdLqaRE~SQkQLKDeVl 192 (310)
-.--|..|..+|+.++..|++-.--....++..-
T Consensus 335 a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~ 368 (522)
T PF05701_consen 335 ASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMS 368 (522)
T ss_pred HHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHH
Confidence 3345666777777777777654444444444333
No 35
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=89.41 E-value=37 Score=37.16 Aligned_cols=92 Identities=25% Similarity=0.425 Sum_probs=52.2
Q ss_pred hhhhHhhhhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHHHHHHHHhc--CCchhHHHHhhhccCcchHHhhhhhhccc
Q 021571 158 EHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAG--VNKDCELRKLLDEVSPKNFERINKLLVVK 235 (310)
Q Consensus 158 EhE~rV~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dIm~Avakag--~~~~~El~kil~evspkn~e~inkll~~k 235 (310)
--..++..+..++..|.+.|+.-+ +-+.+|.+-+.+.-.-+.+.- .+...++..-+.++
T Consensus 768 vD~~~I~~l~~~i~~L~~~l~~ie----~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------- 828 (1201)
T PF12128_consen 768 VDPERIQQLKQEIEQLEKELKRIE----ERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDL--------------- 828 (1201)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH---------------
Confidence 334456666666666666655433 345556665555554444311 12222333222222
Q ss_pred hhHhhhhhhhhHhhhhhcccchhHHHHHHHHhH
Q 021571 236 DEEIHKLKDEIKIMSAHWKLKTKELESQLEKQR 268 (310)
Q Consensus 236 D~eIakLrdeiri~SaHW~~ktKELEsQlekqR 268 (310)
..++..|+.++....+.++.+-+++|.++...+
T Consensus 829 ~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~~~ 861 (1201)
T PF12128_consen 829 EQELQELEQELNQLQKEVKQRRKELEEELKALE 861 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888888888888888876654433
No 36
>PF15294 Leu_zip: Leucine zipper
Probab=89.40 E-value=4.6 Score=38.60 Aligned_cols=74 Identities=23% Similarity=0.426 Sum_probs=57.3
Q ss_pred HhHHHHHhhhhhhHHhHhHHHHHHHHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhhccchhHhhhhhhhhH
Q 021571 171 DNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIK 247 (310)
Q Consensus 171 D~LQKdLqaRE~SQkQLKDeVlRIE~dIm~Avakag~~~~~El~kil~evspkn~e~inkll~~kD~eIakLrdeir 247 (310)
+.+.+-+...+.+++-|++.|..-=|++...=.. ..-...||.+.+.. ...|-||-.+|.-|.++|.-||..+.
T Consensus 204 ~e~ek~~~d~~~~~k~L~e~L~~~KhelL~~Qeq-L~~aekeLekKfqq--T~ay~NMk~~ltkKn~QiKeLRkrl~ 277 (278)
T PF15294_consen 204 SELEKALQDKESQQKALEETLQSCKHELLRVQEQ-LSLAEKELEKKFQQ--TAAYRNMKEILTKKNEQIKELRKRLA 277 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh-hhcchhhHHHHhCc--cHHHHHhHHHHHhccHHHHHHHHHhc
Confidence 4456667777888888888888777776654433 45667788888875 56799999999999999999998763
No 37
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=89.11 E-value=27 Score=35.19 Aligned_cols=213 Identities=19% Similarity=0.285 Sum_probs=119.5
Q ss_pred ccChhhhhhHHHHHHHHHhHHHH-----HHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhh---
Q 021571 25 EIDPLLKDLNEKKQSFRKNVVSL-----AAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEER--- 96 (310)
Q Consensus 25 elDPLLkDL~EKK~sfRRNVvsL-----aaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek--- 96 (310)
+++.-+.++.++-.....++..| ...+.+.-.++-.-=..|.+|-..|+..+.....+.+-|..+.+.-..-
T Consensus 249 ~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e 328 (560)
T PF06160_consen 249 DIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEE 328 (560)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 35556677777766666665544 2333444444444456788899999988888888777776665433222
Q ss_pred hhhhhhhhh-------hHHHHHHHHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhcchhhhhhHhhhhHHH
Q 021571 97 NGRLQASAC-------TAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQ 169 (310)
Q Consensus 97 ~~QL~as~~-------stekyl~eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~LgEQ 169 (310)
-..+.-|-. ....|-.+|..|..+...... .-..-+.--+.+...+.+=...|.+.+.....+.+.
T Consensus 329 ~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~-------~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~ 401 (560)
T PF06160_consen 329 LERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEE-------RIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINES 401 (560)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHH-------HHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222211 122233444444444433322 222222233455666677777788888888888888
Q ss_pred HHhHHHHHh-hhhhhHHhHhHHHHHHHHHHHHHHHHhc-CCchhHHHHhhhcc-------------CcchHHhhhhhhcc
Q 021571 170 LDNLQKDLQ-ARESSQKQLKDEVFRIEQDIMQTIAKAG-VNKDCELRKLLDEV-------------SPKNFERINKLLVV 234 (310)
Q Consensus 170 LD~LQKdLq-aRE~SQkQLKDeVlRIE~dIm~Avakag-~~~~~El~kil~ev-------------spkn~e~inkll~~ 234 (310)
|+.|.++-. ||+ .-..|+-.+. +|-+-|.+.+ .|...+....+..| .|=|.+.||+.|..
T Consensus 402 l~~L~~dE~~Ar~-~l~~~~~~l~----~ikR~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~L~~~pinm~~v~~~l~~ 476 (560)
T PF06160_consen 402 LQSLRKDEKEARE-KLQKLKQKLR----EIKRRLEKSNLPGLPEDYLDYFFDVSDEIEELSDELNQVPINMDEVNKQLEE 476 (560)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHH----HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHH
Confidence 888887643 332 2223333332 3333444444 23333333333222 47889999998888
Q ss_pred chhHhhhhhhhhHhh
Q 021571 235 KDEEIHKLKDEIKIM 249 (310)
Q Consensus 235 kD~eIakLrdeiri~ 249 (310)
--+.|.+|.++..-|
T Consensus 477 a~~~v~~L~~~t~~l 491 (560)
T PF06160_consen 477 AEDDVETLEEKTEEL 491 (560)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888776544
No 38
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=88.38 E-value=31 Score=34.94 Aligned_cols=93 Identities=16% Similarity=0.253 Sum_probs=48.6
Q ss_pred cChhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhh
Q 021571 26 IDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASAC 105 (310)
Q Consensus 26 lDPLLkDL~EKK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~ 105 (310)
+|-|-.||..-....++++. ..++-.++..-|.-+..-.......+.....++.++..+++.+++-...++....
T Consensus 184 ~~~L~~dl~~~~~~~~~~~~-----~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG 258 (650)
T TIGR03185 184 IDRLAGDLTNVLRRRKKSEL-----PSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGG 258 (650)
T ss_pred HHHHHHHHHHHHHHHHhccc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44466777764444444431 2233333333333333333333445556667777777777777777666666443
Q ss_pred hHHHHHHHHhhHhhhHhHHHH
Q 021571 106 TAEKYLMQLDGLRSQLAATKA 126 (310)
Q Consensus 106 stekyl~eLD~lRSQLs~tqA 126 (310)
.+..+.+.|..++....+
T Consensus 259 ---~~~~~r~~Le~ei~~le~ 276 (650)
T TIGR03185 259 ---DLFEEREQLERQLKEIEA 276 (650)
T ss_pred ---hHHHHHHHHHHHHHHHHH
Confidence 344444555555544433
No 39
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=88.03 E-value=2.2 Score=36.89 Aligned_cols=98 Identities=24% Similarity=0.361 Sum_probs=28.6
Q ss_pred CCCCCCCCCCccccChhhhhhH-------HHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHH
Q 021571 13 SSSSSSSSVPAREIDPLLKDLN-------EKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDE 85 (310)
Q Consensus 13 ~~~~~sss~~~~elDPLLkDL~-------EKK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~E 85 (310)
+.++|+++.+..++++.+-.|. -.+-.+-..|+.+-.+|...+..+...+... ..++.|
T Consensus 59 ~~~~~~~~~~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l--------------~~l~~~ 124 (194)
T PF08614_consen 59 SESGSVSSAQISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRL--------------AELEAE 124 (194)
T ss_dssp -------------------------------------------------------HHHHH--------------HHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHH--------------HHHHHH
Confidence 3334445555666677654443 3344455566666666666666665555444 345555
Q ss_pred HHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhhHhHH
Q 021571 86 ICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAAT 124 (310)
Q Consensus 86 i~kLqK~Leek~~QL~as~~stekyl~eLD~lRSQLs~t 124 (310)
+..|+..+.+..+.|..-....+-.-.|+.-|.-++...
T Consensus 125 ~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~ 163 (194)
T PF08614_consen 125 LAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNML 163 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555566667777776655443
No 40
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=88.01 E-value=64 Score=38.18 Aligned_cols=47 Identities=32% Similarity=0.449 Sum_probs=34.5
Q ss_pred hHhhhhhhhhHhhhhhcccchhHHHHHHHHhHhhHHHHHHhhHHHHHHHHH
Q 021571 237 EEIHKLKDEIKIMSAHWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQE 287 (310)
Q Consensus 237 ~eIakLrdeiri~SaHW~~ktKELEsQlekqRR~dQElKkrVlkLEfclqE 287 (310)
.+++.+...|+=++++ -++|+..||..|.+-.+++|..-.|+=-+.+
T Consensus 1090 ~~~~~l~k~i~eL~~~----i~el~e~le~er~~r~K~ek~r~dL~~ele~ 1136 (1930)
T KOG0161|consen 1090 AEVAQLQKQIKELEAR----IKELEEELEAERASRAKAERQRRDLSEELEE 1136 (1930)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777778777775 4788888898888888888877666544433
No 41
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=86.66 E-value=50 Score=35.53 Aligned_cols=68 Identities=24% Similarity=0.369 Sum_probs=39.4
Q ss_pred hHHhhhhhhccchhHhhhh-------hhhhHhhhhhcccch---hHHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHh
Q 021571 224 NFERINKLLVVKDEEIHKL-------KDEIKIMSAHWKLKT---KELESQLEKQRRADQELKKRVLKLEFCLQEARAQ 291 (310)
Q Consensus 224 n~e~inkll~~kD~eIakL-------rdeiri~SaHW~~kt---KELEsQlekqRR~dQElKkrVlkLEfclqEaRsq 291 (310)
+-+.+.+++..||..|+.| .+||.-|-..-..=+ -.+.++++-++-..--+|-++=.++.=|...-+.
T Consensus 225 ~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E 302 (775)
T PF10174_consen 225 ETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSE 302 (775)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777777777664 666666643332222 2455667767666666776666655555544433
No 42
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=86.60 E-value=75 Score=37.51 Aligned_cols=217 Identities=24% Similarity=0.297 Sum_probs=120.9
Q ss_pred HhHHHHHHHHHHHHhhhh----hhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhhhHHH----HHHH
Q 021571 42 KNVVSLAAELKEVRTRLA----SQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEK----YLMQ 113 (310)
Q Consensus 42 RNVvsLaaELKd~R~rLa----sQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~stek----yl~e 113 (310)
..+-+|-+|....+..|. .++.+---++.+|+--|.+.+.++.++.+|.+.|+++..+++.....-++ |..-
T Consensus 766 ~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~ 845 (1822)
T KOG4674|consen 766 QELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNL 845 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 344455555555555543 23333444667888888999999999999999999999999998877665 4445
Q ss_pred HhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhhhhh----------h--hcchhhhhhHhhhhHHHHHhHHHHHhhhh
Q 021571 114 LDGLRSQLAATKATADASAASAQSAQLQCLALVKELDE----------K--NSSLKEHEDRVTRLGQQLDNLQKDLQARE 181 (310)
Q Consensus 114 LD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~keL~e----------K--~~sLkEhE~rV~~LgEQLD~LQKdLqaRE 181 (310)
+|.+-+-+.-+..--..----......+-..|-|+|-. + +.-..--++-+....+|...|...|....
T Consensus 846 i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~ 925 (1822)
T KOG4674|consen 846 VDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDAL 925 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 55554443322211000000011222233333333322 1 11111112334444556666666666666
Q ss_pred hhHHhHhHHHHHHHHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhhccchhHhhhhhhhhHhhhhhcccchhHHH
Q 021571 182 SSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELE 261 (310)
Q Consensus 182 ~SQkQLKDeVlRIE~dIm~Avakag~~~~~El~kil~evspkn~e~inkll~~kD~eIakLrdeiri~SaHW~~ktKELE 261 (310)
.--.|+++++...|.-+..-. +++-+...++..+=-...+++-.+ -++|..|+++|-.++.--.+-+|..|
T Consensus 926 s~i~~yqe~~~s~eqsl~~~k--------s~lde~~~~~ea~ie~~~~k~tsl-E~~ls~L~~~~~~l~~e~~~~~k~~e 996 (1822)
T KOG4674|consen 926 SQIREYQEEYSSLEQSLESVK--------SELDETRLELEAKIESLHKKITSL-EEELSELEKEIENLREELELSTKGKE 996 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccccchh
Confidence 666677777777766554433 333333333333322333333333 35677888888888877777777777
Q ss_pred HHHHHh
Q 021571 262 SQLEKQ 267 (310)
Q Consensus 262 sQlekq 267 (310)
.++.-.
T Consensus 997 ~~~~~~ 1002 (1822)
T KOG4674|consen 997 DKLLDL 1002 (1822)
T ss_pred hhHHHH
Confidence 765543
No 43
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=85.69 E-value=51 Score=34.71 Aligned_cols=57 Identities=25% Similarity=0.442 Sum_probs=44.4
Q ss_pred HHhhhhhhhcchhhhhhHhhhhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHHHHH
Q 021571 145 LVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQT 201 (310)
Q Consensus 145 L~keL~eK~~sLkEhE~rV~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dIm~A 201 (310)
+.+.+.....-+.+-..++..+.++++.+.+.+..=.-...++++.+.-++..|...
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 443 (908)
T COG0419 387 LEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQL 443 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566667777888889999999999877776666678888899999999883
No 44
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=85.06 E-value=40 Score=32.96 Aligned_cols=157 Identities=24% Similarity=0.319 Sum_probs=93.6
Q ss_pred CCCCCCCCCCccccChhhhhhHHHHH-------HHHHhHHHHHHHHHHHHhh------hhhhhhHHHHHHhhHH------
Q 021571 13 SSSSSSSSVPAREIDPLLKDLNEKKQ-------SFRKNVVSLAAELKEVRTR------LASQEQCFVKETLTRQ------ 73 (310)
Q Consensus 13 ~~~~~sss~~~~elDPLLkDL~EKK~-------sfRRNVvsLaaELKd~R~r------LasQEq~~akEt~tRk------ 73 (310)
+..+|||+++.-.+=+.+.-|..+-- .+|.-+..|..|++.+|.- =|.||.-|.-=+.-++
T Consensus 12 ~~~~~~S~~t~~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~k 91 (310)
T PF09755_consen 12 AGMTSSSSATREQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKK 91 (310)
T ss_pred CCCCCCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555544333 3566677888888888853 3556666655555443
Q ss_pred HHHHhhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHH-----HHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhh
Q 021571 74 EAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLM-----QLDGLRSQLAATKATADASAASAQSAQLQCLALVKE 148 (310)
Q Consensus 74 ~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~stekyl~-----eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~ke 148 (310)
+-|.=|.++|-|=.-|-..|.-|-.||+.--+..|.-|. .++.|+.+|.... ++..+-....-+|.+ ..
T Consensus 92 eKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le--~e~~~~q~~le~Lr~----EK 165 (310)
T PF09755_consen 92 EKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLE--KEKSAKQEELERLRR----EK 165 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHH----HH
Confidence 344556677777777777788888888877776666552 2566666665432 222222212222222 22
Q ss_pred hhhhhcchhhhhhHhhhhHHHHHhHHH
Q 021571 149 LDEKNSSLKEHEDRVTRLGQQLDNLQK 175 (310)
Q Consensus 149 L~eK~~sLkEhE~rV~~LgEQLD~LQK 175 (310)
.+=.|-.=.|-|.=||+|+-|.|.|-.
T Consensus 166 VdlEn~LE~EQE~lvN~L~Kqm~~l~~ 192 (310)
T PF09755_consen 166 VDLENTLEQEQEALVNRLWKQMDKLEA 192 (310)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233455557888999999999998754
No 45
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=83.19 E-value=41 Score=31.56 Aligned_cols=38 Identities=11% Similarity=0.203 Sum_probs=24.6
Q ss_pred CchhHHHHhhhccCcchHHhhhhhhccc-hhHhhhhhhh
Q 021571 208 NKDCELRKLLDEVSPKNFERINKLLVVK-DEEIHKLKDE 245 (310)
Q Consensus 208 ~~~~El~kil~evspkn~e~inkll~~k-D~eIakLrde 245 (310)
..-.+-..+-.+.+|.=|...-++..-+ +-.|+.++.+
T Consensus 160 ~~~~~~~~L~~~l~~ell~~yeri~~~~kg~gvvpl~g~ 198 (239)
T COG1579 160 ELSSKREELKEKLDPELLSEYERIRKNKKGVGVVPLEGR 198 (239)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCceEEeecCC
Confidence 3344455666777777777776666665 7777776664
No 46
>PRK04863 mukB cell division protein MukB; Provisional
Probab=82.94 E-value=95 Score=35.65 Aligned_cols=49 Identities=16% Similarity=0.322 Sum_probs=27.3
Q ss_pred hhhhcchhhhhhHhhhhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHH
Q 021571 150 DEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDI 198 (310)
Q Consensus 150 ~eK~~sLkEhE~rV~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dI 198 (310)
.+...-+.+.+..+..+.++++.+++.+..-.....++..++...+..|
T Consensus 372 eeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i 420 (1486)
T PRK04863 372 EEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAV 420 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555666666666666665554444455555666665555
No 47
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=82.53 E-value=35 Score=30.41 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=26.8
Q ss_pred HHHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhcchhhhhh
Q 021571 112 MQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHED 161 (310)
Q Consensus 112 ~eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~keL~eK~~sLkEhE~ 161 (310)
..++..-..|.++..--+-+-.-+..+.-.|-.|=.+|+.-.++|+..|-
T Consensus 113 ~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~ 162 (237)
T PF00261_consen 113 RKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEA 162 (237)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhh
Confidence 34445555555555544444444555555666666666665555554433
No 48
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=82.20 E-value=1e+02 Score=35.39 Aligned_cols=246 Identities=22% Similarity=0.295 Sum_probs=113.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHH-HHHhhHHHHHHhhhchHHHHHHHHHHHhh-------hhhhhhhhhhh
Q 021571 35 EKKQSFRKNVVSLAAELKEVRTRLASQEQCFV-KETLTRQEAEMKAKNMEDEICKLQKTLEE-------RNGRLQASACT 106 (310)
Q Consensus 35 EKK~sfRRNVvsLaaELKd~R~rLasQEq~~a-kEt~tRk~AE~kak~ME~Ei~kLqK~Lee-------k~~QL~as~~s 106 (310)
-|.-.+..-.-++..+||+-.-+...-....+ ++..-++..+.+++........+++.+.+ +-++|.--..-
T Consensus 334 ~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k 413 (1293)
T KOG0996|consen 334 AKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSK 413 (1293)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555666666666655542222221 12222234445554444444444444433 22333344444
Q ss_pred HHHHHHHHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhcchhhhhhH----hhhhHHHHHhHHHHHhhhhh
Q 021571 107 AEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDR----VTRLGQQLDNLQKDLQARES 182 (310)
Q Consensus 107 tekyl~eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~keL~eK~~sLkEhE~r----V~~LgEQLD~LQKdLqaRE~ 182 (310)
..|.-++++..|...+.....-+-+--.-+--|.---.|.+.+..-+..|.+.-+- -..+.+..+-+++.|.--..
T Consensus 414 ~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~ 493 (1293)
T KOG0996|consen 414 IKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLK 493 (1293)
T ss_pred HHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 45555666666666655443332222211111211112222222222223222221 12233344444444444444
Q ss_pred hHHhHhHH--HHHHHHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhhccchhHhhhhhhhhHhhhhhcccchhHH
Q 021571 183 SQKQLKDE--VFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKEL 260 (310)
Q Consensus 183 SQkQLKDe--VlRIE~dIm~Avakag~~~~~El~kil~evspkn~e~inkll~~kD~eIakLrdeiri~SaHW~~ktKEL 260 (310)
.-.+.+-| |.+-|-|||---.-.|..+.-++.+-|...+-.+-|+-+.+..++ .+|.. |+.+-++.
T Consensus 494 ~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k-~~l~~-----------~k~e~~~~ 561 (1293)
T KOG0996|consen 494 QVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLK-EELPS-----------LKQELKEK 561 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhhh-----------HHHHHHHH
Confidence 44445555 566667777766666777777777766666655555544333332 33444 44445555
Q ss_pred HHHHHHhHhhHHHHHH-------hhHHHHHHHHHHHHhh
Q 021571 261 ESQLEKQRRADQELKK-------RVLKLEFCLQEARAQT 292 (310)
Q Consensus 261 EsQlekqRR~dQElKk-------rVlkLEfclqEaRsqt 292 (310)
+..|++-|-+.+.|+. ||--+-=.+|..||+-
T Consensus 562 ~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~ 600 (1293)
T KOG0996|consen 562 EKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRN 600 (1293)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 5555555555554333 3333334456666653
No 49
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=81.82 E-value=86 Score=35.50 Aligned_cols=186 Identities=22% Similarity=0.321 Sum_probs=95.2
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhcchhhhhh
Q 021571 82 MEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHED 161 (310)
Q Consensus 82 ME~Ei~kLqK~Leek~~QL~as~~stekyl~eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~keL~eK~~sLkEhE~ 161 (310)
.+.|+.-.|+.|++-..||..--.+..+| ++|+.||...+ +=++|.+. +-..++-.---+
T Consensus 682 ~~~~~~~~q~el~~le~eL~~le~~~~kf----~~l~~ql~l~~---------------~~l~l~~~-r~~~~e~~~~~~ 741 (1174)
T KOG0933|consen 682 AQKELRAIQKELEALERELKSLEAQSQKF----RDLKQQLELKL---------------HELALLEK-RLEQNEFHKLLD 741 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH---------------HHHHHHHH-HHhcChHhhHHH
Confidence 34455555666666666666555555555 45666664322 22222222 111222111222
Q ss_pred HhhhhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHHHHHHHHhcCCchhHHHHhhhcc------CcchHHhhhhhhccc
Q 021571 162 RVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEV------SPKNFERINKLLVVK 235 (310)
Q Consensus 162 rV~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dIm~Avakag~~~~~El~kil~ev------spkn~e~inkll~~k 235 (310)
.+..+.+-+..++..+...+-.+++--|+|--||.++-+|.+--| .+-.++-|-+... +.++.++=-.....=
T Consensus 742 ~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re-~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l 820 (1174)
T KOG0933|consen 742 DLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRE-RRLKDLEKEIKTAKQRAEESSKELEKRENEYERL 820 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444455556677777888889999988874333 3444444444322 223322211111111
Q ss_pred hhHhhhhhhhhHhhhhhccc----------------------------chhHHHHHHHHhHhhHHHHHHhhHHHHHHHHH
Q 021571 236 DEEIHKLKDEIKIMSAHWKL----------------------------KTKELESQLEKQRRADQELKKRVLKLEFCLQE 287 (310)
Q Consensus 236 D~eIakLrdeiri~SaHW~~----------------------------ktKELEsQlekqRR~dQElKkrVlkLEfclqE 287 (310)
--|+.-|.+||+-.-.+|.. ...+|..|-.++|-.|-|+..-+.+-|-|++|
T Consensus 821 ~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e 900 (1174)
T KOG0933|consen 821 QLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSE 900 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHH
Confidence 12344444555544445533 23455566667788888888888888888887
Q ss_pred H
Q 021571 288 A 288 (310)
Q Consensus 288 a 288 (310)
-
T Consensus 901 ~ 901 (1174)
T KOG0933|consen 901 K 901 (1174)
T ss_pred h
Confidence 4
No 50
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=81.18 E-value=29 Score=37.09 Aligned_cols=162 Identities=22% Similarity=0.326 Sum_probs=85.5
Q ss_pred HHHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhcchhhhhhHhhhhHHHHHhHHHHHhhhhhhHHhHhHHH
Q 021571 112 MQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEV 191 (310)
Q Consensus 112 ~eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~LgEQLD~LQKdLqaRE~SQkQLKDeV 191 (310)
.|+..|..||.-. -.|-++ -.+.|+++ -.+|+--.+-|.++..+|++|.++|+.|.+--...+. ....
T Consensus 265 ~EiqKL~qQL~qv--e~EK~~---L~~~L~e~--Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~--~~~~--- 332 (717)
T PF09730_consen 265 SEIQKLKQQLLQV--EREKSS---LLSNLQES--QKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQ--QSAE--- 332 (717)
T ss_pred HHHHHHHHHHHHH--hhHHHH---HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhh--hhhh---
Confidence 5566666666543 233222 33444443 3456666778889999999999999999882211111 0001
Q ss_pred HHHHHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhhccchhHhhhhhhhhHhhhhhcccchhHHHHHHHHhHhhH
Q 021571 192 FRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQLEKQRRAD 271 (310)
Q Consensus 192 lRIE~dIm~Avakag~~~~~El~kil~evspkn~e~inkll~~kD~eIakLrdeiri~SaHW~~ktKELEsQlekqRR~d 271 (310)
+-..-.+.+.+ .-.-+|.-+.++.+..-+.+--.|+..|+.||+.+-+-...--.--+.+...-+..-
T Consensus 333 --------d~~~~~~s~~d----~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~ 400 (717)
T PF09730_consen 333 --------DSEKERDSHED----GDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEV 400 (717)
T ss_pred --------hcccccccccc----cchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111112222 111222223344445555566688999999998773322111111112222334445
Q ss_pred HHHHHhhHHHHHHHHHHHHhhHHHHH
Q 021571 272 QELKKRVLKLEFCLQEARAQTRKLQR 297 (310)
Q Consensus 272 QElKkrVlkLEfclqEaRsqtrKlQr 297 (310)
|.|+.++..+|=|..+.+.++..|+.
T Consensus 401 q~L~ekl~~lek~~re~qeri~~LE~ 426 (717)
T PF09730_consen 401 QNLKEKLMSLEKSSREDQERISELEK 426 (717)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 77777777777777666666655543
No 51
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=81.10 E-value=32 Score=28.92 Aligned_cols=72 Identities=18% Similarity=0.270 Sum_probs=32.3
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHh
Q 021571 47 LAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLR 118 (310)
Q Consensus 47 LaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~stekyl~eLD~lR 118 (310)
+-.|+.+...+|+..++-+.++..-=...+.....+++....+++-+++..+.+.+....-..+..++-+++
T Consensus 79 ~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 79 LQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555544444443333333333334444444444444444444444444444444444444444
No 52
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=80.76 E-value=50 Score=30.98 Aligned_cols=66 Identities=24% Similarity=0.401 Sum_probs=52.1
Q ss_pred HHHHHHHhhhhhhhcc----hhhhhhHhhhhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHHHHHHHHh
Q 021571 140 LQCLALVKELDEKNSS----LKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKA 205 (310)
Q Consensus 140 lqCl~L~keL~eK~~s----LkEhE~rV~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dIm~Avaka 205 (310)
++=+..+-.||..+.+ .++|..-+..+-.+++-+.+++.+.+.--..|+.+|.++|.||-++-.+-
T Consensus 6 ~~~L~~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~ 75 (239)
T COG1579 6 LKSLLAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERI 75 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455554443 46888889999999999999999999999999999999999998765543
No 53
>PHA02562 46 endonuclease subunit; Provisional
Probab=79.20 E-value=62 Score=31.10 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=13.9
Q ss_pred hhhhhHHHHHHHHHhHHHHHHHHHHH
Q 021571 29 LLKDLNEKKQSFRKNVVSLAAELKEV 54 (310)
Q Consensus 29 LLkDL~EKK~sfRRNVvsLaaELKd~ 54 (310)
.|+++.......+.++..+..+++-.
T Consensus 256 ~L~~l~~~~~~~~~~l~~~~~~~~~~ 281 (562)
T PHA02562 256 ALNKLNTAAAKIKSKIEQFQKVIKMY 281 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555555555555444
No 54
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=77.94 E-value=0.7 Score=46.94 Aligned_cols=32 Identities=31% Similarity=0.514 Sum_probs=0.0
Q ss_pred hhhhhhHhhhhHHHHHhHHHHHhhhhhhHHhH
Q 021571 156 LKEHEDRVTRLGQQLDNLQKDLQARESSQKQL 187 (310)
Q Consensus 156 LkEhE~rV~~LgEQLD~LQKdLqaRE~SQkQL 187 (310)
+..++..+..+-++|+.+++.++.++--..+|
T Consensus 187 ~~~l~~e~~~l~~~le~~~~~~~e~e~~~~~L 218 (722)
T PF05557_consen 187 IQSLESELEELKEQLEELQSELQEAEQQLQEL 218 (722)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555566666666555544433344
No 55
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=77.85 E-value=62 Score=30.32 Aligned_cols=141 Identities=22% Similarity=0.325 Sum_probs=69.4
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHhhHhhhHhHHHHhhHhhHHhHHHHHHH---HHHHHhhhhhhhcchhhhhhHhhhh
Q 021571 90 QKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQ---CLALVKELDEKNSSLKEHEDRVTRL 166 (310)
Q Consensus 90 qK~Leek~~QL~as~~stekyl~eLD~lRSQLs~tqATAeaSaaSAqsaqlq---Cl~L~keL~eK~~sLkEhE~rV~~L 166 (310)
..-|++.-..|..-.-...+++..++.+.-+|..-.+.-..-....+...-. |-. .+|..-...|.+|...+...
T Consensus 151 ~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~--~eL~~lr~eL~~~~~~i~~~ 228 (325)
T PF08317_consen 151 KEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQ--EELEALRQELAEQKEEIEAK 228 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCH--HHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444555555555555444443333322222222211 211 33444445566666666666
Q ss_pred HHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhhccchhHhhhhhhhh
Q 021571 167 GQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEI 246 (310)
Q Consensus 167 gEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dIm~Avakag~~~~~El~kil~evspkn~e~inkll~~kD~eIakLrdei 246 (310)
...|+.++..++.-+..-..+..+.-.....|-++=.... +.-.....||.+|++++
T Consensus 229 k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~-----------------------~~r~~t~~Ev~~Lk~~~ 285 (325)
T PF08317_consen 229 KKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIRE-----------------------ECRGWTRSEVKRLKAKV 285 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HhcCCCHHHHHHHHHHH
Confidence 6666666666655555544555555444444444332211 11223447888899988
Q ss_pred Hhhh--hhccc
Q 021571 247 KIMS--AHWKL 255 (310)
Q Consensus 247 ri~S--aHW~~ 255 (310)
+.|. ..|+.
T Consensus 286 ~~Le~~~gw~~ 296 (325)
T PF08317_consen 286 DALEKLTGWKI 296 (325)
T ss_pred HHHHHHHCcEE
Confidence 8775 35654
No 56
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=77.13 E-value=65 Score=30.18 Aligned_cols=87 Identities=21% Similarity=0.311 Sum_probs=39.3
Q ss_pred HHHhhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhc
Q 021571 75 AEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNS 154 (310)
Q Consensus 75 AE~kak~ME~Ei~kLqK~Leek~~QL~as~~stekyl~eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~keL~eK~~ 154 (310)
...+...++.|+..|+....+ ...|.. .+|..+|..|+...+.-++....-...+-+.-. .+.
T Consensus 182 l~~~~~~L~~e~~~Lk~~~~e------~~~~D~----~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~-------l~~ 244 (325)
T PF08317_consen 182 LRERKAELEEELENLKQLVEE------IESCDQ----EELEALRQELAEQKEEIEAKKKELAELQEELEE-------LEE 244 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHhh------hhhcCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Confidence 444445566666666555443 122222 456666666665555444333333333333333 333
Q ss_pred chhhhhhHhhhhHHHHHhHHHHHh
Q 021571 155 SLKEHEDRVTRLGQQLDNLQKDLQ 178 (310)
Q Consensus 155 sLkEhE~rV~~LgEQLD~LQKdLq 178 (310)
.+.+-......+-.++..+++.+.
T Consensus 245 ~i~~~~~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 245 KIEELEEQKQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444445555555443
No 57
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.56 E-value=54 Score=36.30 Aligned_cols=136 Identities=21% Similarity=0.286 Sum_probs=75.0
Q ss_pred cChhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhh-HHHHHHhhH--HHHHHhhhchHHHHHHHHHHHhhhhhhhhh
Q 021571 26 IDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQ-CFVKETLTR--QEAEMKAKNMEDEICKLQKTLEERNGRLQA 102 (310)
Q Consensus 26 lDPLLkDL~EKK~sfRRNVvsLaaELKd~R~rLasQEq-~~akEt~tR--k~AE~kak~ME~Ei~kLqK~Leek~~QL~a 102 (310)
+|.-++|+.+-+..+.+++--|-++|+-++....+-=| .=+-+|.+. .-|+.+.+.++.+--.|.|.|++++
T Consensus 690 L~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~----- 764 (970)
T KOG0946|consen 690 LEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNEELNAALSENKKLENDQELLTKELNKKN----- 764 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----
Confidence 44445555555566666666666666655444332111 011111111 1233333333333333444443333
Q ss_pred hhhhHHHHHHHHhhHhhhHhHHHHhhHhh---HHhHHHHHHHHHHHHhhhhhhhcchhhhhhHhhhhHHHHHhHHHHHhh
Q 021571 103 SACTAEKYLMQLDGLRSQLAATKATADAS---AASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQA 179 (310)
Q Consensus 103 s~~stekyl~eLD~lRSQLs~tqATAeaS---aaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~LgEQLD~LQKdLqa 179 (310)
..+-+..+++-.|+.+ ..-+..-|-|-..+.+.|.++..+|-+|....+++.+|..-+-.+..|
T Consensus 765 -------------~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa 831 (970)
T KOG0946|consen 765 -------------ADIESFKATQRSAELSQGSLNDNLGDQEQVIELLKNLSEESTRLQELQSELTQLKEQIQTLLERTSA 831 (970)
T ss_pred -------------HHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444555444443 344566788899999999999999999999999999988766544443
No 58
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=75.22 E-value=41 Score=28.29 Aligned_cols=69 Identities=20% Similarity=0.315 Sum_probs=34.6
Q ss_pred CccccChhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHH
Q 021571 22 PAREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQ 90 (310)
Q Consensus 22 ~~~elDPLLkDL~EKK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLq 90 (310)
...+.+..+..|.++-..|.+-+-.+..++.+.+.-...-...+...-..=+..+..-++|+.|+..++
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666666666666666666666666655444333222221111111344445555555555555
No 59
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=75.08 E-value=40 Score=37.85 Aligned_cols=115 Identities=30% Similarity=0.400 Sum_probs=80.4
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhcchhhhhhHhh
Q 021571 85 EICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVT 164 (310)
Q Consensus 85 Ei~kLqK~Leek~~QL~as~~stekyl~eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~ 164 (310)
++.|++|.||-++-.+.--....|+.-.++|.+-++++.-|.--||+-- --+.+.+|-+||=-| |+||.
T Consensus 397 d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlG--------AE~MV~qLtdknlnl---EekVk 465 (1243)
T KOG0971|consen 397 DHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALG--------AEEMVEQLTDKNLNL---EEKVK 465 (1243)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------HHHHHHHHHhhccCH---HHHHH
Confidence 4567888888888888887888888888888888888887777666421 123455566777544 78999
Q ss_pred hhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHHHHHHHHhcCCchhHHHH
Q 021571 165 RLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRK 215 (310)
Q Consensus 165 ~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dIm~Avakag~~~~~El~k 215 (310)
.|.|-...| ++=+==+.||-+---..|.|.|+-+-++..++ -|+.+
T Consensus 466 lLeetv~dl----Ealee~~EQL~Esn~ele~DLreEld~~~g~~-kel~~ 511 (1243)
T KOG0971|consen 466 LLEETVGDL----EALEEMNEQLQESNRELELDLREELDMAKGAR-KELQK 511 (1243)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-HHHHH
Confidence 888877654 44444456776666778999999998884443 44433
No 60
>PF01608 I_LWEQ: I/LWEQ domain; InterPro: IPR002558 I/LWEQ domains bind to actin. It has been shown that the I/LWEQ domains from mouse talin P26039 from SWISSPROT and yeast Sla2p P33338 from SWISSPROT interact with F-actin []. The domain has four conserved blocks, the name of the domain is derived from the initial conserved amino acid of each of the four blocks []. I/LWEQ domains can be placed into four major groups based on sequence similarity: Metazoan talin. Dictyostelium discoideum (Slime mould) TalA/TalB P54633 from SWISSPROT and SLA110. Metazoan Hip1p O00291 from SWISSPROT. Saccharomyces cerevisiae Sla2p P33338 from SWISSPROT. ; GO: 0003779 actin binding; PDB: 2QDQ_A 2JSW_A 1R0D_B.
Probab=74.06 E-value=5.1 Score=35.17 Aligned_cols=34 Identities=38% Similarity=0.570 Sum_probs=29.6
Q ss_pred ccchhHHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHhhHHHHHHH
Q 021571 254 KLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRVM 299 (310)
Q Consensus 254 ~~ktKELEsQlekqRR~dQElKkrVlkLEfclqEaRsqtrKlQr~~ 299 (310)
..|+.|+|+|. +||+||--|+.+|-++..|.|.+
T Consensus 115 ~~k~~eMe~Qv------------~iL~lE~eLe~ar~kL~~lRk~~ 148 (152)
T PF01608_consen 115 QAKRQEMEAQV------------RILKLEKELEKARKKLAELRKAH 148 (152)
T ss_dssp -HHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999997 49999999999999999998886
No 61
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=73.77 E-value=30 Score=31.89 Aligned_cols=73 Identities=30% Similarity=0.492 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHH--HHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhh
Q 021571 43 NVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICK--LQKTLEERNGRLQASACTAEKYLMQLDGLRSQ 120 (310)
Q Consensus 43 NVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~k--LqK~Leek~~QL~as~~stekyl~eLD~lRSQ 120 (310)
-+|+|=+-|+++|+.|...+..... . ..-...|++|.|+|. ||....+. ..|+-. ..++-.|+.+||..
T Consensus 32 Eiv~Lr~ql~e~~~~l~~~~~~~~~-l----~~~~~~K~~ELE~ce~ELqr~~~Ea-~lLrek---l~~le~El~~Lr~~ 102 (202)
T PF06818_consen 32 EIVSLRAQLRELRAELRNKESQIQE-L----QDSLRTKQLELEVCENELQRKKNEA-ELLREK---LGQLEAELAELREE 102 (202)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHH-H----HHHHHHhhHhHHHhHHHHHHHhCHH-HHhhhh---hhhhHHHHHHHHHH
Confidence 4789999999999999877655431 0 112345666666663 22222221 112211 22233577788877
Q ss_pred HhHH
Q 021571 121 LAAT 124 (310)
Q Consensus 121 Ls~t 124 (310)
++..
T Consensus 103 l~~~ 106 (202)
T PF06818_consen 103 LACA 106 (202)
T ss_pred HHhh
Confidence 7665
No 62
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=71.48 E-value=1.3 Score=45.12 Aligned_cols=45 Identities=33% Similarity=0.455 Sum_probs=0.0
Q ss_pred hHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhh
Q 021571 71 TRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRS 119 (310)
Q Consensus 71 tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~stekyl~eLD~lRS 119 (310)
.+...+.++..+|.||.+|+. +|..|.+-+-.+..|..|||.||.
T Consensus 261 ~~~d~~~~~e~le~ei~~L~q----~~~eL~~~A~~a~~LrDElD~lR~ 305 (713)
T PF05622_consen 261 QRDDLKIELEELEKEIDELRQ----ENEELQAEAREARALRDELDELRE 305 (713)
T ss_dssp -------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhHHHHHH
Confidence 344445555566777766654 455566666666666677776665
No 63
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=71.02 E-value=85 Score=28.75 Aligned_cols=53 Identities=42% Similarity=0.589 Sum_probs=34.8
Q ss_pred hhhHhh------hhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHHHH-HHHHhcCCchhHHHHhhh
Q 021571 159 HEDRVT------RLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQ-TIAKAGVNKDCELRKLLD 218 (310)
Q Consensus 159 hE~rV~------~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dIm~-Avakag~~~~~El~kil~ 218 (310)
-++||+ +|-+||..|..+|. ++||+=.....||+- ...++|.+|-.-|++|=.
T Consensus 174 EeeR~t~~EKnk~lq~QL~~L~~EL~-------~~kde~k~T~~D~~h~en~~~g~~ky~tl~~i~~ 233 (246)
T PF00769_consen 174 EEERVTYAEKNKRLQEQLKELKSELE-------QLKDEEKQTQLDIIHAENVRAGRDKYKTLRQIRQ 233 (246)
T ss_dssp GGC---HHHH-HHHHHHHHHHHHHHH-------TTB-CCG--HHHHHHHHHHHTT--HHHHHHHHT-
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH-------HHhhhhccchhHHHHHHHHHhchhHHHHHHHHhc
Confidence 456665 58889999988875 678887788889886 456899999999988743
No 64
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=71.01 E-value=1.9e+02 Score=32.78 Aligned_cols=20 Identities=35% Similarity=0.584 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHHhhhhhhhh
Q 021571 82 MEDEICKLQKTLEERNGRLQ 101 (310)
Q Consensus 82 ME~Ei~kLqK~Leek~~QL~ 101 (310)
+|++|.-++|.+.+.-+.+.
T Consensus 233 ~~e~i~~l~k~i~e~~e~~~ 252 (1074)
T KOG0250|consen 233 KEEEIKNLKKKIKEEEEKLD 252 (1074)
T ss_pred HHhhhHHHHHHHHHHHHHHH
Confidence 44444444444444444433
No 65
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=70.29 E-value=23 Score=32.85 Aligned_cols=100 Identities=23% Similarity=0.340 Sum_probs=59.2
Q ss_pred HhHHHHHhhhhhhHHhHhHHHHHHHHHHHHHHHH----hcCCchhHHHHhhh----------ccCcchH----Hhhhhhh
Q 021571 171 DNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAK----AGVNKDCELRKLLD----------EVSPKNF----ERINKLL 232 (310)
Q Consensus 171 D~LQKdLqaRE~SQkQLKDeVlRIE~dIm~Avak----ag~~~~~El~kil~----------evspkn~----e~inkll 232 (310)
+.||+.+..-+-...+.+.=+-++|.|++..-+- .+++.+..+..... ..+|... ..-+.+|
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~siL 81 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSIL 81 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccHH
Confidence 3444444444444445566688999999988754 22333333322211 2344431 2333344
Q ss_pred ccchhHhhhhhhhhHhhhhhcccchhHHHHHHHHhHhhHHHHHHhhHHH
Q 021571 233 VVKDEEIHKLKDEIKIMSAHWKLKTKELESQLEKQRRADQELKKRVLKL 281 (310)
Q Consensus 233 ~~kD~eIakLrdeiri~SaHW~~ktKELEsQlekqRR~dQElKkrVlkL 281 (310)
. =|..=||.. +.|..|||.++-++..+-+.|+..|=+|
T Consensus 82 p----IVtsQRDRF-------R~Rn~ELE~elr~~~~~~~~L~~Ev~~L 119 (248)
T PF08172_consen 82 P----IVTSQRDRF-------RQRNAELEEELRKQQQTISSLRREVESL 119 (248)
T ss_pred H----HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 255556654 5688999999999999999988887665
No 66
>PRK12704 phosphodiesterase; Provisional
Probab=68.27 E-value=51 Score=33.42 Aligned_cols=19 Identities=32% Similarity=0.471 Sum_probs=7.4
Q ss_pred hHHHHHHHHHHHhhhhhhh
Q 021571 82 MEDEICKLQKTLEERNGRL 100 (310)
Q Consensus 82 ME~Ei~kLqK~Leek~~QL 100 (310)
.|.++.+..+.|..|.++|
T Consensus 80 ~e~~L~qrE~rL~~Ree~L 98 (520)
T PRK12704 80 RRNELQKLEKRLLQKEENL 98 (520)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333433333344333333
No 67
>PRK03918 chromosome segregation protein; Provisional
Probab=67.73 E-value=1.5e+02 Score=30.31 Aligned_cols=11 Identities=27% Similarity=0.462 Sum_probs=4.5
Q ss_pred HHHHhhhccCc
Q 021571 212 ELRKLLDEVSP 222 (310)
Q Consensus 212 El~kil~evsp 222 (310)
++.++-..+.|
T Consensus 373 ~l~~l~~~l~~ 383 (880)
T PRK03918 373 ELERLKKRLTG 383 (880)
T ss_pred HHHHHHHHhcc
Confidence 33334444444
No 68
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=66.94 E-value=22 Score=30.74 Aligned_cols=68 Identities=22% Similarity=0.302 Sum_probs=28.8
Q ss_pred chHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhh
Q 021571 81 NMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKE 148 (310)
Q Consensus 81 ~ME~Ei~kLqK~Leek~~QL~as~~stekyl~eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~ke 148 (310)
.+..++.++.+.+.++...|..-.......-.++.++...|..-..+-+.--.--.+-++++..+-+.
T Consensus 99 ~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k 166 (194)
T PF08614_consen 99 ELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEK 166 (194)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555444444444444444445555555555555555554444456667777766544
No 69
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=66.39 E-value=1.7e+02 Score=30.37 Aligned_cols=61 Identities=15% Similarity=0.288 Sum_probs=36.4
Q ss_pred HHHHHhhHHH--HHHhhhchHHHHHHHHHHHhhhhhhhhhhhh---------hHHHHHHHHhhHhhhHhHHH
Q 021571 65 FVKETLTRQE--AEMKAKNMEDEICKLQKTLEERNGRLQASAC---------TAEKYLMQLDGLRSQLAATK 125 (310)
Q Consensus 65 ~akEt~tRk~--AE~kak~ME~Ei~kLqK~Leek~~QL~as~~---------stekyl~eLD~lRSQLs~tq 125 (310)
|..++..++. |.+-..-+++++..+++.|++-..+|.++-. .++.++.++.+|+.|++..+
T Consensus 253 Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~ 324 (726)
T PRK09841 253 YLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELT 324 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444433 3333556677777777777766666555432 24457778888888876654
No 70
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=66.10 E-value=99 Score=27.64 Aligned_cols=44 Identities=30% Similarity=0.367 Sum_probs=30.0
Q ss_pred chhHHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHhhHHHHHHH
Q 021571 256 KTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRVM 299 (310)
Q Consensus 256 ktKELEsQlekqRR~dQElKkrVlkLEfclqEaRsqtrKlQr~~ 299 (310)
+-++.|...+.--|.-+-|-+.|=.||-=|...+.....+++-+
T Consensus 184 ~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~el 227 (237)
T PF00261_consen 184 KLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEEL 227 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666677777777777777777777777654
No 71
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=65.84 E-value=2.1e+02 Score=31.21 Aligned_cols=78 Identities=8% Similarity=0.132 Sum_probs=52.9
Q ss_pred hhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhhccchhHhhhhhh
Q 021571 165 RLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKD 244 (310)
Q Consensus 165 ~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dIm~Avakag~~~~~El~kil~evspkn~e~inkll~~kD~eIakLrd 244 (310)
....+++.++..+.+-.-....+..++......+..+++..|+...-.+..++ .++...+.+..-+.--++.++.++.
T Consensus 721 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~f~~~~~~~~~~--~~~~~~~~l~~~i~~~~~~~~~~~~ 798 (1047)
T PRK10246 721 QVHEQCLSLHSQLQTLQQQDVLEAQRLQKAQAQFDTALQASVFDDQQAFLAAL--LDEETLTQLEQLKQNLENQRQQAQT 798 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555666777778888899999999998888887776 6777777766666555555555554
No 72
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=65.69 E-value=1.7e+02 Score=33.03 Aligned_cols=161 Identities=20% Similarity=0.308 Sum_probs=94.3
Q ss_pred hhhhhhhhhhhhhHHHHHHHHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhcchhhhhhHhhhhHHHHHhH
Q 021571 94 EERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNL 173 (310)
Q Consensus 94 eek~~QL~as~~stekyl~eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~LgEQLD~L 173 (310)
++-|+++.-+-.-+|.--.|+|.|||||+--|..-|+--.-| +|.-.-+.-|+.-...+.--++-|.++.+=++.+
T Consensus 372 eeA~e~~~e~e~r~e~~E~EvD~lksQLADYQQALD~QQTRA----lQYQQAi~ALekAk~Lc~l~dLt~~~~e~~~~~f 447 (1480)
T COG3096 372 EEANERQEENEARAEAAELEVDELKSQLADYQQALDVQQTRA----IQYQQAIAALERAKELCHLPDLTADSAEEWLETF 447 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHhcCccccchhhHHHHHHHH
Confidence 345667766666677777899999999999888777653333 3333334444444445555666777666655555
Q ss_pred HHHHhhhhhhHHhHhHHHHHHHHH--HHHHHHHhcCCchhHH-HHhhhccCcch-HHhhhhhhccchhHhhhhhhhhHhh
Q 021571 174 QKDLQARESSQKQLKDEVFRIEQD--IMQTIAKAGVNKDCEL-RKLLDEVSPKN-FERINKLLVVKDEEIHKLKDEIKIM 249 (310)
Q Consensus 174 QKdLqaRE~SQkQLKDeVlRIE~d--Im~Avakag~~~~~El-~kil~evspkn-~e~inkll~~kD~eIakLrdeiri~ 249 (310)
+-. +.-+-.+|+.+|+- |-+| |+..+++--+| -+|.-+|+-.- ++---.+|.--.+ ++. .---
T Consensus 448 ~A~-------~e~~Te~lL~Le~kms~s~A-A~sQF~~AyqLV~~iaGE~~RS~A~~~A~~llR~~p~--q~~---~aq~ 514 (1480)
T COG3096 448 QAK-------EEEATEKLLSLEQKMSMAQA-AHSQFEQAYQLVVAIAGELARSEAWDVARELLREGPD--QRH---LAEQ 514 (1480)
T ss_pred HHh-------HHHHHHHHHHHHHhccHHHH-HHHHHHHHHHHHHHHhCccchhhHHHHHHHHHHhChh--hHH---HHHh
Confidence 433 33455668888874 4444 34555555554 46677776432 2222222211100 000 0112
Q ss_pred hhhcccchhHHHHHHHHhHhhH
Q 021571 250 SAHWKLKTKELESQLEKQRRAD 271 (310)
Q Consensus 250 SaHW~~ktKELEsQlekqRR~d 271 (310)
-+.|..|-.|||.+++.|+-+.
T Consensus 515 ~~~lr~~l~eLEqr~~qQqsa~ 536 (1480)
T COG3096 515 VQPLRMRLSELEQRLRQQQSAE 536 (1480)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 3679999999999999887654
No 73
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=65.63 E-value=85 Score=26.71 Aligned_cols=61 Identities=18% Similarity=0.278 Sum_probs=34.4
Q ss_pred HhhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhhHhHHHHhhHhhHHhHHH
Q 021571 77 MKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQS 137 (310)
Q Consensus 77 ~kak~ME~Ei~kLqK~Leek~~QL~as~~stekyl~eLD~lRSQLs~tqATAeaSaaSAqs 137 (310)
.++-.+|..+..|..+...+..++.+-..-....=.+||.+..+|..++.-++.+.-....
T Consensus 14 ~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~ 74 (143)
T PF12718_consen 14 DRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSN 74 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 3444444444444444444444444433333344468888888888888877777654443
No 74
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=65.01 E-value=3e+02 Score=32.89 Aligned_cols=111 Identities=21% Similarity=0.296 Sum_probs=63.9
Q ss_pred ccCCCCCCCCCCccccChhhhhhHHHHHHH----HHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHH
Q 021571 11 STSSSSSSSSVPAREIDPLLKDLNEKKQSF----RKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEI 86 (310)
Q Consensus 11 ~~~~~~~sss~~~~elDPLLkDL~EKK~sf----RRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei 86 (310)
+++|+..++.++.+ ++-.|+||.+--.+. +.|.-.+--++...+--.-----...+....+.+|..|.++++..|
T Consensus 620 ~nss~~~~t~~~~~-~e~~l~qLe~~le~~~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~i 698 (1822)
T KOG4674|consen 620 PNSSALDQTEAPRA-KEKRLRQLENELESYKKEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNL 698 (1822)
T ss_pred CCchhhcccccchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34444555556555 677788876532221 2222222222322222211111223455667788999999999999
Q ss_pred HHHHHHHh---hhhhhhhhhhhhHHH----HHHHHhhHhhhHh
Q 021571 87 CKLQKTLE---ERNGRLQASACTAEK----YLMQLDGLRSQLA 122 (310)
Q Consensus 87 ~kLqK~Le---ek~~QL~as~~stek----yl~eLD~lRSQLs 122 (310)
..+..... +++--|..++...++ +..||-.-++++.
T Consensus 699 e~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~ 741 (1822)
T KOG4674|consen 699 ELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLE 741 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 88876554 888888888888777 3345555555544
No 75
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=64.93 E-value=78 Score=26.74 Aligned_cols=68 Identities=19% Similarity=0.359 Sum_probs=45.9
Q ss_pred ccccChhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHh
Q 021571 23 AREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLE 94 (310)
Q Consensus 23 ~~elDPLLkDL~EKK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Le 94 (310)
+.-+---|+.+.....+++.-+..|.++=+.++.-+.. +..+...-+........++.++..|+.+.+
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~----l~~~~e~~~~~~~~~~~L~~el~~l~~ry~ 85 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVK----LMEENEELRALKKEVEELEQELEELQQRYQ 85 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667888888888888888888877777776665 444554445555566667777776666543
No 76
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=64.60 E-value=68 Score=25.26 Aligned_cols=63 Identities=22% Similarity=0.366 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHh
Q 021571 32 DLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLE 94 (310)
Q Consensus 32 DL~EKK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Le 94 (310)
.|..+...|+.+++....-|++.-.+...-.+....|+..+..-+...+.+-.+|..|+....
T Consensus 36 ~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~ 98 (126)
T PF13863_consen 36 ELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEIS 98 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666667777777777777777777666677776666666666666666666665554443
No 77
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=64.07 E-value=1.1e+02 Score=32.55 Aligned_cols=88 Identities=23% Similarity=0.311 Sum_probs=46.6
Q ss_pred HHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhh-------hhhhHHH-
Q 021571 38 QSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQA-------SACTAEK- 109 (310)
Q Consensus 38 ~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~a-------s~~stek- 109 (310)
.-+-+-|--|..+.++-..+|..-++. ++..+ .-|+.=|..+| +|..-|+.|..|-..+.- ..+.+|+
T Consensus 561 ~ei~~rv~~Lk~~~e~Ql~~L~~l~e~--~~~l~-~~ae~LaeR~e-~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~ 636 (717)
T PF10168_consen 561 EEIQRRVKLLKQQKEQQLKELQELQEE--RKSLR-ESAEKLAERYE-EAKDKQEKLMKRVDRVLQLLNSQLPVLSEAERE 636 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH-HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHH
Confidence 334444555555555544444433221 22221 22333334443 355556666665554322 3566777
Q ss_pred HHHHHhhHhhhHhHHHHhhH
Q 021571 110 YLMQLDGLRSQLAATKATAD 129 (310)
Q Consensus 110 yl~eLD~lRSQLs~tqATAe 129 (310)
|.+||+.++.+|..-++.-+
T Consensus 637 ~~~EL~~~~~~l~~l~~si~ 656 (717)
T PF10168_consen 637 FKKELERMKDQLQDLKASIE 656 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999877665433
No 78
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=63.16 E-value=1.1e+02 Score=27.29 Aligned_cols=198 Identities=24% Similarity=0.320 Sum_probs=97.7
Q ss_pred HHHHHHHhhhhhhhhHHHHHHhhHHHH-HHhhhchHHHHHHHHHHHhhhhhhhhhhhhhHH-HHHHHHhhHhhhHhHHHH
Q 021571 49 AELKEVRTRLASQEQCFVKETLTRQEA-EMKAKNMEDEICKLQKTLEERNGRLQASACTAE-KYLMQLDGLRSQLAATKA 126 (310)
Q Consensus 49 aELKd~R~rLasQEq~~akEt~tRk~A-E~kak~ME~Ei~kLqK~Leek~~QL~as~~ste-kyl~eLD~lRSQLs~tqA 126 (310)
.=|.-+..++..-+..+..|...|+.. +.+...|-+-|++|.+.|+....+=.-+.-... .|-..+.++...+..--.
T Consensus 5 ~KL~~i~e~~~~f~~~le~e~~~Rr~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~~~~ 84 (247)
T PF06705_consen 5 SKLASINERFSGFESDLENEKRQRREQEEQRFQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQERVENQIS 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667788888888899998888554 578899999999999988754333222222222 233555555544432211
Q ss_pred hhHhh-HHhHHHHHHHHHHHHhhhhhhhcchh-hhhhHhhhhHHHHHhHHHHHhh----hhhh----HHhHhHHHHHHHH
Q 021571 127 TADAS-AASAQSAQLQCLALVKELDEKNSSLK-EHEDRVTRLGQQLDNLQKDLQA----RESS----QKQLKDEVFRIEQ 196 (310)
Q Consensus 127 TAeaS-aaSAqsaqlqCl~L~keL~eK~~sLk-EhE~rV~~LgEQLD~LQKdLqa----RE~S----QkQLKDeVlRIE~ 196 (310)
+--.+ ..+-.+-.--|-.|-..+.+-..-+. .=|..-..|+.+|..|+..+.. |.-. -+.|.|++.+|..
T Consensus 85 ~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~krl~e~~~~l~~ 164 (247)
T PF06705_consen 85 EKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENILKRLEEEENRLQE 164 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 11112223334445444443211111 1222333455556555554432 2211 1234444555544
Q ss_pred HHHHHHHHhcCCchhHHHHhhhccCcchHHhhh-hhhccchhHhhhhhhhhHh
Q 021571 197 DIMQTIAKAGVNKDCELRKLLDEVSPKNFERIN-KLLVVKDEEIHKLKDEIKI 248 (310)
Q Consensus 197 dIm~Avakag~~~~~El~kil~evspkn~e~in-kll~~kD~eIakLrdeiri 248 (310)
-|-... ......-.+|+..+++|.- +.++-| ++-+.==+||+-|++.|-.
T Consensus 165 ~i~~Ek-~~Re~~~~~l~~~le~~~~-~~~~~~e~f~~~v~~Ei~~lk~~l~~ 215 (247)
T PF06705_consen 165 KIEKEK-NTRESKLSELRSELEEVKR-RREKGDEQFQNFVLEEIAALKNALAL 215 (247)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 443322 2223455667777766652 111111 2222233677777777643
No 79
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=63.15 E-value=1.7e+02 Score=31.58 Aligned_cols=74 Identities=23% Similarity=0.346 Sum_probs=48.8
Q ss_pred CCCCccccChhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhh
Q 021571 19 SSVPAREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEER 96 (310)
Q Consensus 19 ss~~~~elDPLLkDL~EKK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek 96 (310)
..++..++++ +.=|.-|-..+-.-|..|.+|||..|.++..-+.-+..+. ..-+....+|.+.+..+.++..+.
T Consensus 344 ~~~ye~Di~~-~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek---~~~~~e~q~L~ekl~~lek~~re~ 417 (717)
T PF09730_consen 344 GDYYEVDING-LEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEK---DRLESEVQNLKEKLMSLEKSSRED 417 (717)
T ss_pred cchhhhcccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3445555544 3335556666667788999999999999988777444332 334556677777777777755444
No 80
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=62.88 E-value=2e+02 Score=30.06 Aligned_cols=106 Identities=16% Similarity=0.295 Sum_probs=58.3
Q ss_pred hcchhhhhhHhhhhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhh
Q 021571 153 NSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLL 232 (310)
Q Consensus 153 ~~sLkEhE~rV~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dIm~Avakag~~~~~El~kil~evspkn~e~inkll 232 (310)
...|.+=...|+.+..++..+..++..-..+-+|+.+|+.+.+.-..+--.... ..--+..+ =.-+|.|+++++.++
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~--l~~k~~~l-L~d~e~ni~kL~~~v 403 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK--LKKKTVEL-LPDAEENIAKLQALV 403 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH-hcCcHHHHHHHHHHH
Confidence 344444555666666666666777776666777777766655544433221111 01111112 234678999988887
Q ss_pred ccchhHhhhhhhhhHhhhhhcccchhHHHHHHHHhH
Q 021571 233 VVKDEEIHKLKDEIKIMSAHWKLKTKELESQLEKQR 268 (310)
Q Consensus 233 ~~kD~eIakLrdeiri~SaHW~~ktKELEsQlekqR 268 (310)
...-.-+.. |..-|.-.-+.|...++..|
T Consensus 404 ~~s~~rl~~-------L~~qWe~~R~pL~~e~r~lk 432 (594)
T PF05667_consen 404 EASEQRLVE-------LAQQWEKHRAPLIEEYRRLK 432 (594)
T ss_pred HHHHHHHHH-------HHHHHHHHHhHHHHHHHHHH
Confidence 766554444 44556665555555444443
No 81
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=62.68 E-value=2e+02 Score=30.04 Aligned_cols=38 Identities=18% Similarity=0.485 Sum_probs=26.4
Q ss_pred hHhhhhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHH
Q 021571 161 DRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDI 198 (310)
Q Consensus 161 ~rV~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dI 198 (310)
..|..+-++...+.-+++.++=.-+||..|+-+.-.|+
T Consensus 447 ~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~ 484 (594)
T PF05667_consen 447 QEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDV 484 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 34556666777777777777777777777777766653
No 82
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=62.23 E-value=48 Score=36.61 Aligned_cols=122 Identities=24% Similarity=0.266 Sum_probs=75.2
Q ss_pred hhhhHhhhhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhhccchh
Q 021571 158 EHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDE 237 (310)
Q Consensus 158 EhE~rV~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dIm~Avakag~~~~~El~kil~evspkn~e~inkll~~kD~ 237 (310)
+|-.+.++++-+|+.+.|+|.-. +++.|-.++=-..+.++..........+-.+++|-- .
T Consensus 464 ~~~~~q~~ls~el~el~k~l~~K--------e~l~rr~~~~~~~~~~~~~~~e~~~~~le~e~~~le------------~ 523 (913)
T KOG0244|consen 464 GHPQKQGSLSGELSELEKRLAEK--------EPLTRRKAYEKAEKSKAKEQYESDSGTLEAEKSPLE------------S 523 (913)
T ss_pred cchHHHhhhhHHHHHHHhhhccc--------cHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHhcccc------------c
Confidence 45567778899999999988644 444444443333444444444444444444444311 4
Q ss_pred HhhhhhhhhHhhhh-------hcccchhHHHHHHHHhHhhHHH----------HHHhhHHHHHHHHHHHHhhHHHHHHH
Q 021571 238 EIHKLKDEIKIMSA-------HWKLKTKELESQLEKQRRADQE----------LKKRVLKLEFCLQEARAQTRKLQRVM 299 (310)
Q Consensus 238 eIakLrdeiri~Sa-------HW~~ktKELEsQlekqRR~dQE----------lKkrVlkLEfclqEaRsqtrKlQr~~ 299 (310)
|..+|++|+..+-. |...|-|.||+|..+-+.-.-+ .+.-+-||.=|++-+..|.-.|+|.|
T Consensus 524 E~~~l~~el~~~~~~~~kl~eer~qklk~le~q~s~lkk~l~~~~~l~~~~~~~~~~~~kl~~ei~~~k~~kv~l~~~~ 602 (913)
T KOG0244|consen 524 ERSRLRNELNVFNRLAAKLGEERVQKLKSLETQISLLKKKLSSQRKLIKPKPKSEGIRAKLLQEIHIAKGQKVQLLRVM 602 (913)
T ss_pred ccHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHHHHHHHHhhHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666655443 6777888999887654433322 23345688999999999998888876
No 83
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=62.22 E-value=1.3e+02 Score=27.80 Aligned_cols=155 Identities=23% Similarity=0.326 Sum_probs=79.2
Q ss_pred HHHHHHHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhcchhhhhhHhhhhHHHHHhHHHHHhhhhhhHHhH
Q 021571 108 EKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQL 187 (310)
Q Consensus 108 ekyl~eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~LgEQLD~LQKdLqaRE~SQkQL 187 (310)
.+=.+|+=.||.||--+++..+++-. ++..|-..++.|+-.|..++..+.+.....+.|
T Consensus 27 ~~K~~Eiv~Lr~ql~e~~~~l~~~~~-------~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lL-------------- 85 (202)
T PF06818_consen 27 NQKDSEIVSLRAQLRELRAELRNKES-------QIQELQDSLRTKQLELEVCENELQRKKNEAELL-------------- 85 (202)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhhHH-------HHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHh--------------
Confidence 34567888888888877776655443 333334445566666666665555444333333
Q ss_pred hHHHHHHHHHHH---HHHHHhcC-CchhHHHHhhhccCcchHHhhhhhhccchhHhhhhhhhhHhhhhhcccchhHHHHH
Q 021571 188 KDEVFRIEQDIM---QTIAKAGV-NKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQ 263 (310)
Q Consensus 188 KDeVlRIE~dIm---~Avakag~-~~~~El~kil~evspkn~e~inkll~~kD~eIakLrdeiri~SaHW~~ktKELEsQ 263 (310)
++-|-.+|.+|. ++++.+|. ..+|-.....+++-+..-.- -.-+.--..++.+|+.||...-- +-.+.-+-
T Consensus 86 rekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~-~~~~~~l~~e~erL~aeL~~er~----~~e~q~~~ 160 (202)
T PF06818_consen 86 REKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAG-EDELGSLRREVERLRAELQRERQ----RREEQRSS 160 (202)
T ss_pred hhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccc-cccchhHHHHHHHHHHHHHHHHH----hHHHHHHH
Confidence 333444444443 22323221 11111111111111000000 00011112577788888776533 23344556
Q ss_pred HHHhHhhHHHHHHhhHHHHHHHHHH
Q 021571 264 LEKQRRADQELKKRVLKLEFCLQEA 288 (310)
Q Consensus 264 lekqRR~dQElKkrVlkLEfclqEa 288 (310)
.+--|++=+|=|-||++--==||-.
T Consensus 161 Fe~ER~~W~eEKekVi~YQkQLQ~n 185 (202)
T PF06818_consen 161 FEQERRTWQEEKEKVIRYQKQLQQN 185 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788999999999999876655544
No 84
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=62.03 E-value=60 Score=27.31 Aligned_cols=61 Identities=31% Similarity=0.479 Sum_probs=35.7
Q ss_pred ccccChhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhh
Q 021571 23 AREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEE 95 (310)
Q Consensus 23 ~~elDPLLkDL~EKK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Lee 95 (310)
..++|.-+.+|.+.-..++..+-.|-+||+..++.+.. .+.......++.|+..|..+|+.
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~------------~el~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTN------------EELREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555544433 33455566778888888877765
No 85
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=61.06 E-value=1.3e+02 Score=30.21 Aligned_cols=118 Identities=18% Similarity=0.297 Sum_probs=67.8
Q ss_pred ccChhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhh
Q 021571 25 EIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASA 104 (310)
Q Consensus 25 elDPLLkDL~EKK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~as~ 104 (310)
..+-.++-+.+.-..+|..+..|..++...++.+- +|..|..|+. ++.--|...||+.|..+
T Consensus 209 ~~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~-~e~~~~~~~L--qEEr~R~erLEeqlNd~--------------- 270 (395)
T PF10267_consen 209 QQNLGLQKILEELREIKESQSRLEESIEKLKEQYQ-REYQFILEAL--QEERYRYERLEEQLNDL--------------- 270 (395)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH--HHhHHHHHHHHHHHHHH---------------
Confidence 44445555666667788889999999988888743 3444554443 45556666777777655
Q ss_pred hhHHHHHHHHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhcchhhhhhHhhhhHHHHHhHHHHH
Q 021571 105 CTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDL 177 (310)
Q Consensus 105 ~stekyl~eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~LgEQLD~LQKdL 177 (310)
+|-..+|+--|+..|+-+. .--+.|--.=++.++|--.+ .--||.+++ ...+|+..
T Consensus 271 --~elHq~Ei~~LKqeLa~~E----------EK~~Yqs~eRaRdi~E~~Es---~qtRisklE--~~~~Qq~~ 326 (395)
T PF10267_consen 271 --TELHQNEIYNLKQELASME----------EKMAYQSYERARDIWEVMES---CQTRISKLE--QQQQQQVV 326 (395)
T ss_pred --HHHHHHHHHHHHHHHHhHH----------HHHHHHHHHHHhHHHHHHHH---HHHHHHHHH--HHHhhhhh
Confidence 3445566666666665432 12223333334444443333 345677776 33555553
No 86
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=59.64 E-value=3.1e+02 Score=31.20 Aligned_cols=45 Identities=29% Similarity=0.465 Sum_probs=26.6
Q ss_pred hhcchhhhhhHhhhhHHHH-HhHHHHHhhhhhhHHhHhHHHHHHHH
Q 021571 152 KNSSLKEHEDRVTRLGQQL-DNLQKDLQARESSQKQLKDEVFRIEQ 196 (310)
Q Consensus 152 K~~sLkEhE~rV~~LgEQL-D~LQKdLqaRE~SQkQLKDeVlRIE~ 196 (310)
.......-+-++..+.+|+ ..++..+.-++=--++|+-||-.+|.
T Consensus 370 ~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~ 415 (1074)
T KOG0250|consen 370 LKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEE 415 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555 45555556666566677777777766
No 87
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=59.63 E-value=2.7e+02 Score=30.58 Aligned_cols=142 Identities=25% Similarity=0.372 Sum_probs=86.5
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhH-HHHHHhhhchHHHHHHHHH---HHhhhhhhhhhhhhhH
Q 021571 32 DLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTR-QEAEMKAKNMEDEICKLQK---TLEERNGRLQASACTA 107 (310)
Q Consensus 32 DL~EKK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tR-k~AE~kak~ME~Ei~kLqK---~Leek~~QL~as~~st 107 (310)
.|-+.+.-+|-.+-|+--|++..+. |..+. ...|..+|..|-||.+..| +|+.+---|+...-.-
T Consensus 538 ~Lee~~~~Lrneles~~eel~~k~~-----------Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk 606 (786)
T PF05483_consen 538 NLEETNTQLRNELESVKEELKQKGE-----------EVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVENK 606 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555666555555555555443 22221 3456667777777766543 4555555566655555
Q ss_pred HHHHHHHh----hHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhcchhhhhhHhhh-hHHHHHhHHHHHhhhhh
Q 021571 108 EKYLMQLD----GLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTR-LGQQLDNLQKDLQARES 182 (310)
Q Consensus 108 ekyl~eLD----~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~-LgEQLD~LQKdLqaRE~ 182 (310)
.+++.+|. .|.-|+ +|.++++.++ .-|.+.|.+-=..+++ .+|-.|.++++++.+..
T Consensus 607 ~K~ieeLqqeNk~LKKk~---------~aE~kq~~~~---------eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~ 668 (786)
T PF05483_consen 607 NKNIEELQQENKALKKKI---------TAESKQSNVY---------EIKVNKLQEELENLKKKHEEETDKYQKEIESKSI 668 (786)
T ss_pred HhHHHHHHHHHHHHHHHH---------HHHHHHHHHH---------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Confidence 66665543 333332 2344555443 3355566554455555 78889999999999999
Q ss_pred hHHhHhHHHHHHHHHHHHHH
Q 021571 183 SQKQLKDEVFRIEQDIMQTI 202 (310)
Q Consensus 183 SQkQLKDeVlRIE~dIm~Av 202 (310)
|...|-.||-..-.-..+||
T Consensus 669 ~e~~L~~EveK~k~~a~EAv 688 (786)
T PF05483_consen 669 SEEELLGEVEKAKLTADEAV 688 (786)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 99999999877655555555
No 88
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=59.51 E-value=1.7e+02 Score=28.12 Aligned_cols=22 Identities=9% Similarity=0.267 Sum_probs=10.3
Q ss_pred hhchHHHHHHHHHHHhhhhhhh
Q 021571 79 AKNMEDEICKLQKTLEERNGRL 100 (310)
Q Consensus 79 ak~ME~Ei~kLqK~Leek~~QL 100 (310)
...+|.++..|....-+.+.++
T Consensus 256 l~~l~~~l~~l~~~y~~~hP~v 277 (498)
T TIGR03007 256 IEALEKQLDALRLRYTDKHPDV 277 (498)
T ss_pred HHHHHHHHHHHHHHhcccChHH
Confidence 3334444555544444444444
No 89
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=59.48 E-value=1.7e+02 Score=28.12 Aligned_cols=44 Identities=20% Similarity=0.299 Sum_probs=30.1
Q ss_pred hhHhhhhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHHHHHHH
Q 021571 160 EDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIA 203 (310)
Q Consensus 160 E~rV~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dIm~Ava 203 (310)
..++..+..||..+.......-+--+.+++++-.++..|.+.+.
T Consensus 253 ~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~~~ 296 (498)
T TIGR03007 253 DGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEEGS 296 (498)
T ss_pred HHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhhcc
Confidence 34566666677766666666667777778887777777766654
No 90
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=59.20 E-value=2.5e+02 Score=29.94 Aligned_cols=33 Identities=27% Similarity=0.346 Sum_probs=27.8
Q ss_pred cCcchHHhhhhhhccchhHhhhhhhhhHhhhhh
Q 021571 220 VSPKNFERINKLLVVKDEEIHKLKDEIKIMSAH 252 (310)
Q Consensus 220 vspkn~e~inkll~~kD~eIakLrdeiri~SaH 252 (310)
.|....+.|...|.--.++|+.+..+|+=|..|
T Consensus 682 L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~ 714 (717)
T PF10168_consen 682 LSESQKRTIKEILKQQGEEIDELVKQIKNIKKI 714 (717)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466777889999999999999999999877665
No 91
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=59.08 E-value=2.2e+02 Score=29.22 Aligned_cols=200 Identities=24% Similarity=0.313 Sum_probs=112.6
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhh-hhhh--------
Q 021571 32 DLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNG-RLQA-------- 102 (310)
Q Consensus 32 DL~EKK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~-QL~a-------- 102 (310)
+|++-|..|=--+-+|-.++++++.-|..|.-.+.+=+..-+.+. -+|..+. -... -+.+
T Consensus 75 ~~d~vk~h~d~~i~~l~~~i~~~k~~~~~q~~~~~~~~~~~~~~~-------~~~~~~~----~~~~~~~~~~~~~~~~~ 143 (426)
T smart00806 75 ELDEVKKHIDDEIDTLQNELDEVKQALESQREAIQRLKERQQNSA-------ANIARPA----ASPSPVLASSSSAISLA 143 (426)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhcc-------cCccccc----CCCCccccccccccccc
Confidence 347778888888999999999999999888776654222111111 1111110 0000 0010
Q ss_pred --hhhhHHHHHHHHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhcchhhhhhHhhhhHHHHHhHHHHHhhh
Q 021571 103 --SACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQAR 180 (310)
Q Consensus 103 --s~~stekyl~eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~LgEQLD~LQKdLqaR 180 (310)
+....-.++.||..||-.|++.+.|-...-..-+... +.+-+|.+.++.--.-++. +.=.-|.
T Consensus 144 ~~~~~~~~~~~~el~~lrrdLavlRQ~~~~~~~~~~~sm-------~~i~~k~~~~k~~~~~~~~-----~s~R~y~--- 208 (426)
T smart00806 144 NNPDKLNKEQRAELKSLQRELAVLRQTHNSFFTEIKESI-------KDILEKIDKFKSSSLSASG-----SSNRAYV--- 208 (426)
T ss_pred CCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhccCC-----CcchHHH---
Confidence 0011123779999999999999988665544333222 2222223322221111110 0011111
Q ss_pred hhhHHhHhHHHHHH----H--HHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhhccchhHhhhhhhhhHhhhhhcc
Q 021571 181 ESSQKQLKDEVFRI----E--QDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWK 254 (310)
Q Consensus 181 E~SQkQLKDeVlRI----E--~dIm~Avakag~~~~~El~kil~evspkn~e~inkll~~kD~eIakLrdeiri~SaHW~ 254 (310)
+.|++.|-++.-++ + .|||+++.|== -.==--++|+.++.+++.+..--.++.++.+=|..--++|+
T Consensus 209 e~~k~kL~~~Sd~lltkVDDLQD~vE~LRkDV-------~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~Wk 281 (426)
T smart00806 209 ESSKKKLSEDSDSLLTKVDDLQDIIEALRKDV-------AQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPIWK 281 (426)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHH
Confidence 33455555553222 2 46777664421 00011368999999999999999999999999999999996
Q ss_pred cchhHHHHHHHHh
Q 021571 255 LKTKELESQLEKQ 267 (310)
Q Consensus 255 ~ktKELEsQlekq 267 (310)
|-.|+.|++-
T Consensus 282 ---KiWE~EL~~V 291 (426)
T smart00806 282 ---KIWEAELDKV 291 (426)
T ss_pred ---HHHHHHHHHH
Confidence 5566666553
No 92
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=58.75 E-value=3.5e+02 Score=31.48 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=10.8
Q ss_pred HhHhhHHHHHHhhHHHHHHHHH
Q 021571 266 KQRRADQELKKRVLKLEFCLQE 287 (310)
Q Consensus 266 kqRR~dQElKkrVlkLEfclqE 287 (310)
+.||-.+-+..-|++|++-|+.
T Consensus 746 ~l~r~~~~~~~~vl~Lq~~LEq 767 (1317)
T KOG0612|consen 746 ELRRSKDQLITEVLKLQSMLEQ 767 (1317)
T ss_pred hhhhhHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555543
No 93
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=57.85 E-value=85 Score=28.31 Aligned_cols=100 Identities=17% Similarity=0.244 Sum_probs=65.0
Q ss_pred HHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhhhhhh
Q 021571 73 QEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEK 152 (310)
Q Consensus 73 k~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~stekyl~eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~keL~eK 152 (310)
..+|.+-+.||.++.+|+|.+.-=-..+++...+.-.+...+.++-.-..... + ....-.+...+++|+.
T Consensus 14 ~~~e~~f~~~e~~~~kL~k~~k~y~da~~~l~~~q~~i~~~l~~lY~p~~~~~---~------~~~~~~y~~~v~~l~~- 83 (224)
T cd07591 14 EFEERRYRTMEKASTKLQKEAKGYLDSLRALTSSQARIAETISSFYGDAGDKD---G------AMLSQEYKQAVEELDA- 83 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc---H------hHHHHHHHHHHHHHHH-
Confidence 36889999999999999999988888888888887777777776654433210 0 0111234444555542
Q ss_pred hcchhhhhh--------HhhhhHHHHHhHHHHHhhhhhh
Q 021571 153 NSSLKEHED--------RVTRLGQQLDNLQKDLQARESS 183 (310)
Q Consensus 153 ~~sLkEhE~--------rV~~LgEQLD~LQKdLqaRE~S 183 (310)
....|++. |++++-.++..+++-+..|+--
T Consensus 84 -~~~~el~~~~~~~V~~Pl~~~~~~~~~i~k~IkKR~~K 121 (224)
T cd07591 84 -ETVKELDGPYRQTVLDPIGRFNSYFPEINEAIKKRNHK 121 (224)
T ss_pred -HHHHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 23334443 5667777777777777766543
No 94
>PHA02562 46 endonuclease subunit; Provisional
Probab=57.69 E-value=1.8e+02 Score=27.96 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=12.6
Q ss_pred hhHhhhhHHHHHhHHHHHhhhh
Q 021571 160 EDRVTRLGQQLDNLQKDLQARE 181 (310)
Q Consensus 160 E~rV~~LgEQLD~LQKdLqaRE 181 (310)
+.++..|-.+++.++..+..=+
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~ 319 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLD 319 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666655554433
No 95
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=57.50 E-value=2e+02 Score=28.32 Aligned_cols=47 Identities=23% Similarity=0.401 Sum_probs=38.9
Q ss_pred hcchhhhhhHhhhhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHHH
Q 021571 153 NSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIM 199 (310)
Q Consensus 153 ~~sLkEhE~rV~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dIm 199 (310)
+..-.|||.-|++|.-+++.|.++..+......||+.|-..+|.-+.
T Consensus 127 ~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE 173 (310)
T PF09755_consen 127 NQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLE 173 (310)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHH
Confidence 34456899999999999999999988888888899999766776543
No 96
>PRK09039 hypothetical protein; Validated
Probab=57.46 E-value=1.8e+02 Score=27.84 Aligned_cols=7 Identities=14% Similarity=0.439 Sum_probs=3.8
Q ss_pred HhHhHHH
Q 021571 185 KQLKDEV 191 (310)
Q Consensus 185 kQLKDeV 191 (310)
.++|+++
T Consensus 193 ~~~~~~~ 199 (343)
T PRK09039 193 NRYRSEF 199 (343)
T ss_pred HHhHHHH
Confidence 3555555
No 97
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=57.32 E-value=20 Score=30.22 Aligned_cols=40 Identities=33% Similarity=0.523 Sum_probs=33.5
Q ss_pred chhHHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHhhHHH
Q 021571 256 KTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKL 295 (310)
Q Consensus 256 ktKELEsQlekqRR~dQElKkrVlkLEfclqEaRsqtrKl 295 (310)
|--.||.+...+.+.-..|++||--|||.|..-|+...++
T Consensus 33 rIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~ 72 (134)
T PF08232_consen 33 RIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKL 72 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3456788888888899999999999999999988876553
No 98
>PTZ00491 major vault protein; Provisional
Probab=55.69 E-value=2.7e+02 Score=30.87 Aligned_cols=43 Identities=26% Similarity=0.290 Sum_probs=32.3
Q ss_pred hHhHHHHHHHHHHHHHHHHhcCCchhHHHHhh--------hccCcchHHhh
Q 021571 186 QLKDEVFRIEQDIMQTIAKAGVNKDCELRKLL--------DEVSPKNFERI 228 (310)
Q Consensus 186 QLKDeVlRIE~dIm~Avakag~~~~~El~kil--------~evspkn~e~i 228 (310)
.++.-|-.|=.|-..|+|+||...--.|+.-| |--||=|.=+.
T Consensus 789 kf~~~v~aig~~T~~~iA~agpe~qaklL~~LGl~~~litDG~sPiNLf~t 839 (850)
T PTZ00491 789 KFERIVEALGRETLIAIARAGPELQAKLLGGLGLKGYLVTDGKSPINLFNT 839 (850)
T ss_pred HHHHHHHhhChHHHHHHHHhCcHhHHHHHhhcCCceEEeecCCCchhHHhh
Confidence 45566888889999999999987777777643 56678775443
No 99
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=55.58 E-value=1.6e+02 Score=26.71 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHh
Q 021571 32 DLNEKKQSFRKNVVSLAAELKEVRT 56 (310)
Q Consensus 32 DL~EKK~sfRRNVvsLaaELKd~R~ 56 (310)
++..+...+.-++..+-+++...+.
T Consensus 78 ~~~~~l~~l~~~~~~l~a~~~~l~~ 102 (423)
T TIGR01843 78 DVEADAAELESQVLRLEAEVARLRA 102 (423)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666654443
No 100
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=55.44 E-value=42 Score=30.35 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=16.8
Q ss_pred HHHHhhhchHHHHHHHHHHHhhhh
Q 021571 74 EAEMKAKNMEDEICKLQKTLEERN 97 (310)
Q Consensus 74 ~AE~kak~ME~Ei~kLqK~Leek~ 97 (310)
.++.--+.||+||.+|.++++--+
T Consensus 117 ~Vd~~~~eL~~eI~~L~~~i~~le 140 (171)
T PF04799_consen 117 QVDQTKNELEDEIKQLEKEIQRLE 140 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556789999988887765433
No 101
>PF14282 FlxA: FlxA-like protein
Probab=54.96 E-value=46 Score=26.89 Aligned_cols=34 Identities=26% Similarity=0.369 Sum_probs=19.8
Q ss_pred CCCCCCCCccccChhhhhhHHHHHHHHHhHHHHH
Q 021571 15 SSSSSSVPAREIDPLLKDLNEKKQSFRKNVVSLA 48 (310)
Q Consensus 15 ~~~sss~~~~elDPLLkDL~EKK~sfRRNVvsLa 48 (310)
++++++.+....|..++.|......+-.-+-.|.
T Consensus 6 s~~ss~~s~~~~~~~I~~L~~Qi~~Lq~ql~~l~ 39 (106)
T PF14282_consen 6 SSSSSSSSSGSSDSQIEQLQKQIKQLQEQLQELS 39 (106)
T ss_pred cccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444448888888887766555444433
No 102
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=54.81 E-value=37 Score=26.55 Aligned_cols=68 Identities=22% Similarity=0.391 Sum_probs=39.9
Q ss_pred CCCCCccccChhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhh
Q 021571 18 SSSVPAREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERN 97 (310)
Q Consensus 18 sss~~~~elDPLLkDL~EKK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~ 97 (310)
||+-+...|--+|+.|-.--.-++--.+-|+++++.. .+|.+ ..+-+.++.++..|-+.||-|.
T Consensus 7 ~s~~p~~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~------------d~s~~----~~~R~~L~~~l~~lv~~mE~K~ 70 (79)
T PF06657_consen 7 PSQSPGEALSEVLKALQDEFGHMKMEHQELQDEYKQM------------DPSLG----RRKRRDLEQELEELVKRMEAKA 70 (79)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------------ccccC----hHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555556655544433333344444444332 22332 2345789999999999999999
Q ss_pred hhhh
Q 021571 98 GRLQ 101 (310)
Q Consensus 98 ~QL~ 101 (310)
.|+-
T Consensus 71 dQI~ 74 (79)
T PF06657_consen 71 DQIY 74 (79)
T ss_pred HHHH
Confidence 9974
No 103
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=54.41 E-value=55 Score=25.06 Aligned_cols=23 Identities=48% Similarity=0.726 Sum_probs=20.9
Q ss_pred HHHHHhhhchHHHHHHHHHHHhh
Q 021571 73 QEAEMKAKNMEDEICKLQKTLEE 95 (310)
Q Consensus 73 k~AE~kak~ME~Ei~kLqK~Lee 95 (310)
++||.+-+.++.||..|.+.+++
T Consensus 35 qeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 35 QEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999998876
No 104
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=53.51 E-value=80 Score=27.04 Aligned_cols=55 Identities=24% Similarity=0.300 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHh-hHHHHHHhhhchHHHHHHHHHHHhhhhhh
Q 021571 45 VSLAAELKEVRTRLASQEQCFVKETL-TRQEAEMKAKNMEDEICKLQKTLEERNGR 99 (310)
Q Consensus 45 vsLaaELKd~R~rLasQEq~~akEt~-tRk~AE~kak~ME~Ei~kLqK~Leek~~Q 99 (310)
+++..++-..+.++..-..--...+. ..+.-+.+.+..++||.+|.+.|+.++..
T Consensus 121 ~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~ 176 (192)
T PF05529_consen 121 HSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKE 176 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 45666666666555432221111111 11223345566778888888888774443
No 105
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=52.57 E-value=60 Score=33.40 Aligned_cols=69 Identities=23% Similarity=0.327 Sum_probs=47.2
Q ss_pred HHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhhhHHH-HHHHHhh
Q 021571 38 QSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEK-YLMQLDG 116 (310)
Q Consensus 38 ~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~stek-yl~eLD~ 116 (310)
-.++-+|.-|.+++|++|.+|+.- +..-+.+-.|-.+|+++..+-+.|++....+..+ +-+|.+.
T Consensus 55 DTP~DTlrTlva~~k~~r~~~~~l--------------~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~q 120 (472)
T TIGR03752 55 DTPADTLRTLVAEVKELRKRLAKL--------------ISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQ 120 (472)
T ss_pred CCccchHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHH
Confidence 478999999999999999998642 2222334456668888888888888876655432 3344444
Q ss_pred Hhhh
Q 021571 117 LRSQ 120 (310)
Q Consensus 117 lRSQ 120 (310)
|.++
T Consensus 121 l~~~ 124 (472)
T TIGR03752 121 LKSE 124 (472)
T ss_pred HHHH
Confidence 4443
No 106
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=52.44 E-value=2.8e+02 Score=28.44 Aligned_cols=32 Identities=19% Similarity=0.101 Sum_probs=19.3
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhH
Q 021571 33 LNEKKQSFRKNVVSLAAELKEVRTRLASQEQC 64 (310)
Q Consensus 33 L~EKK~sfRRNVvsLaaELKd~R~rLasQEq~ 64 (310)
+..|....++-..||...|.++|.+|...|.-
T Consensus 185 ~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~ 216 (754)
T TIGR01005 185 GAAKSESNTAAADFLAPEIADLSKQSRDAEAE 216 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666666666666666655543
No 107
>smart00307 ILWEQ I/LWEQ domain. Thought to possess an F-actin binding function.
Probab=51.99 E-value=23 Score=32.34 Aligned_cols=38 Identities=37% Similarity=0.510 Sum_probs=32.1
Q ss_pred hhhhcccchhHHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHhhHHHHHHH
Q 021571 249 MSAHWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRVM 299 (310)
Q Consensus 249 ~SaHW~~ktKELEsQlekqRR~dQElKkrVlkLEfclqEaRsqtrKlQr~~ 299 (310)
|+.| ..|++|+|+|. +||+||=-|+.+|-.+..|.|.+
T Consensus 159 l~~~-~~k~~emE~Qv------------~IL~lE~~L~~ar~~L~~lRk~~ 196 (200)
T smart00307 159 LSLH-EGKTQEMEQQV------------EILKLENELEAARKKLAEIRKQH 196 (200)
T ss_pred cchH-HHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 67999999997 59999999999999999888875
No 108
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=50.91 E-value=3.6e+02 Score=29.33 Aligned_cols=100 Identities=22% Similarity=0.298 Sum_probs=53.6
Q ss_pred HHHHhhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhh
Q 021571 74 EAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKN 153 (310)
Q Consensus 74 ~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~stekyl~eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~keL~eK~ 153 (310)
+-+.+...|+.|-..|.-+|..-+.+++.+-.--.-.=..|..|+++|..++.. .++.-.|+.|..-..+-= .
T Consensus 593 el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS-----~s~~E~ql~~~~e~~e~l--e 665 (769)
T PF05911_consen 593 ELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKES-----NSLAETQLKAMKESYESL--E 665 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH--h
Confidence 334455566666666666555555555555444444445667788888855443 234566888874443311 1
Q ss_pred cchhhhhhHhhhhHHHHHhHHHHHhhh
Q 021571 154 SSLKEHEDRVTRLGQQLDNLQKDLQAR 180 (310)
Q Consensus 154 ~sLkEhE~rV~~LgEQLD~LQKdLqaR 180 (310)
.-+++-|--++.+-.....|.-.|+..
T Consensus 666 ~~~~~~e~E~~~l~~Ki~~Le~Ele~e 692 (769)
T PF05911_consen 666 TRLKDLEAEAEELQSKISSLEEELEKE 692 (769)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222444555555555555555544
No 109
>PRK00106 hypothetical protein; Provisional
Probab=50.87 E-value=1.5e+02 Score=30.68 Aligned_cols=9 Identities=44% Similarity=0.704 Sum_probs=3.8
Q ss_pred HHHHHHHhH
Q 021571 260 LESQLEKQR 268 (310)
Q Consensus 260 LEsQlekqR 268 (310)
.|.-.+|.+
T Consensus 299 IEe~v~k~~ 307 (535)
T PRK00106 299 IEELVEKNR 307 (535)
T ss_pred HHHHHHHHH
Confidence 344444433
No 110
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.74 E-value=2.4e+02 Score=27.16 Aligned_cols=151 Identities=18% Similarity=0.312 Sum_probs=82.9
Q ss_pred CCCCCCCccccCh-------hhhhhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHH
Q 021571 16 SSSSSVPAREIDP-------LLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICK 88 (310)
Q Consensus 16 ~~sss~~~~elDP-------LLkDL~EKK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~k 88 (310)
.|.++|+...++- -|+++.+.+.-|-.-|-+|.+.+-+.-++.-+..--+.+.=..=+..+.+....++-|..
T Consensus 19 ~~~t~V~a~~~~~~i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 19 AFLTTVFAALLSDKIQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred hhcchhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666555444 567788888888888888888888887777666655554333334444444444444444
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHHH------HHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhcchhhhhhH
Q 021571 89 LQKTLEERNGRLQASACTAEKYLM------QLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDR 162 (310)
Q Consensus 89 LqK~Leek~~QL~as~~stekyl~------eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~keL~eK~~sLkEhE~r 162 (310)
.++.|.+|---++.+-+++ .|+. -+-|+=+.+.+.....++-. .+++.+-+...+|.+-..-
T Consensus 99 r~~~l~~raRAmq~nG~~t-~Yidvil~SkSfsD~IsRvtAi~~iv~aDk-----------~ile~qk~dk~~Le~kq~~ 166 (265)
T COG3883 99 RQELLKKRARAMQVNGTAT-SYIDVILNSKSFSDLISRVTAISVIVDADK-----------KILEQQKEDKKSLEEKQAA 166 (265)
T ss_pred HHHHHHHHHHHHHHcCChh-HHHHHHHccCcHHHHHHHHHHHHHHHHHhH-----------HHHHHHHHHHHHHHHHHHH
Confidence 4444444443333333333 3774 33444444444333332221 3455555556666666666
Q ss_pred hhhhHHHHHhHHHHHh
Q 021571 163 VTRLGQQLDNLQKDLQ 178 (310)
Q Consensus 163 V~~LgEQLD~LQKdLq 178 (310)
|+.=-++|--++.+++
T Consensus 167 l~~~~e~l~al~~e~e 182 (265)
T COG3883 167 LEDKLETLVALQNELE 182 (265)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555555444
No 111
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=50.56 E-value=1.5e+02 Score=24.81 Aligned_cols=70 Identities=20% Similarity=0.231 Sum_probs=51.3
Q ss_pred cccChhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHH
Q 021571 24 REIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTL 93 (310)
Q Consensus 24 ~elDPLLkDL~EKK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~L 93 (310)
.+.......|...+..+-+.+.....-|...+.-+...|..+.++...-+.=+.+++..+.|+.+..+.+
T Consensus 16 ~~~~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~ 85 (160)
T PF13094_consen 16 REDSFDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKA 85 (160)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3333445566677777777776666666677788888888888888888888888888888887776654
No 112
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=50.17 E-value=3.7e+02 Score=29.24 Aligned_cols=148 Identities=21% Similarity=0.310 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHhhhh--hhhhHHH-HHHhhHHHHH--Hhhh--ch-------HHHHHHHHHHHhhhh
Q 021571 32 DLNEKKQSFRKNVVSLAAELKEVRTRLA--SQEQCFV-KETLTRQEAE--MKAK--NM-------EDEICKLQKTLEERN 97 (310)
Q Consensus 32 DL~EKK~sfRRNVvsLaaELKd~R~rLa--sQEq~~a-kEt~tRk~AE--~kak--~M-------E~Ei~kLqK~Leek~ 97 (310)
.=..|--+|-||+--|=.|+--.++++. ..+..|. ++-...+-.- .|+| .. .-|+-.+|..|++.+
T Consensus 235 ~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~ 314 (775)
T PF10174_consen 235 EKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLE 314 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556777777777777777766655 3333333 2222222111 1211 11 234555666666555
Q ss_pred hh----------hhhhhhhHHH----HHHHHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhcchhhhhhHh
Q 021571 98 GR----------LQASACTAEK----YLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRV 163 (310)
Q Consensus 98 ~Q----------L~as~~stek----yl~eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV 163 (310)
.| |+.|.++.++ +..++|.||..|.-....-+--.++...++=-=.-+..++++...-+.-.+-.|
T Consensus 315 ~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki 394 (775)
T PF10174_consen 315 EQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKI 394 (775)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 3334444433 556677777766655444444334434444344445566666666666667777
Q ss_pred hhhHHHHHhHHHHHhh
Q 021571 164 TRLGQQLDNLQKDLQA 179 (310)
Q Consensus 164 ~~LgEQLD~LQKdLqa 179 (310)
+.|-..+++|.-.|.-
T Consensus 395 ~~Lq~kie~Lee~l~e 410 (775)
T PF10174_consen 395 NVLQKKIENLEEQLRE 410 (775)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777766654
No 113
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=50.13 E-value=2.8e+02 Score=27.91 Aligned_cols=42 Identities=12% Similarity=0.315 Sum_probs=33.5
Q ss_pred hhHhhhhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHHHHH
Q 021571 160 EDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQT 201 (310)
Q Consensus 160 E~rV~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dIm~A 201 (310)
...|..+...|+.....|+.-.---..|++.|-.+..+|...
T Consensus 280 ~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~ 321 (522)
T PF05701_consen 280 QSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKE 321 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345888888999999999888888888888888888777544
No 114
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=49.34 E-value=2e+02 Score=25.84 Aligned_cols=53 Identities=19% Similarity=0.269 Sum_probs=31.0
Q ss_pred HHHHHHhhhchHHHHHHHHHH-------HhhhhhhhhhhhhhHHHHHHHHhhHhhhHhHH
Q 021571 72 RQEAEMKAKNMEDEICKLQKT-------LEERNGRLQASACTAEKYLMQLDGLRSQLAAT 124 (310)
Q Consensus 72 Rk~AE~kak~ME~Ei~kLqK~-------Leek~~QL~as~~stekyl~eLD~lRSQLs~t 124 (310)
.+..|...+.+|..|..||.. .++.+-.+...-+.++..-.++.+.+.+-..|
T Consensus 126 ~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~~ 185 (190)
T PF05266_consen 126 LKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQSV 185 (190)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666655553 44555555555566666666777776666544
No 115
>PF13166 AAA_13: AAA domain
Probab=48.68 E-value=2.9e+02 Score=27.64 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=20.0
Q ss_pred hhhhhHHHHHHHHHhHHHHHHHHHHHHhhhhh
Q 021571 29 LLKDLNEKKQSFRKNVVSLAAELKEVRTRLAS 60 (310)
Q Consensus 29 LLkDL~EKK~sfRRNVvsLaaELKd~R~rLas 60 (310)
.+..++..-..+-+-+..+..++..++.++..
T Consensus 371 ~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~ 402 (712)
T PF13166_consen 371 IIDELNELIEEHNEKIDNLKKEQNELKDKLWL 402 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666777777777766644
No 116
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=48.62 E-value=2.1e+02 Score=26.01 Aligned_cols=103 Identities=16% Similarity=0.303 Sum_probs=65.3
Q ss_pred hhhhHhhhhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhhccchh
Q 021571 158 EHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDE 237 (310)
Q Consensus 158 EhE~rV~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dIm~Avakag~~~~~El~kil~evspkn~e~inkll~~kD~ 237 (310)
-+|-.+.++..|+++|+.-+-+=|.+ .+..++++|...+ +..|.+++.+++ +++|.+++.==.|
T Consensus 78 ~~E~ql~q~~~ql~nLEq~~~~iE~a---------~~~~ev~~aLk~g----~~aLK~~~k~~~---idkVd~lmDei~E 141 (191)
T PTZ00446 78 LYEQEIENILNNRLTLEDNMINLENM---------HLHKIAVNALSYA----ANTHKKLNNEIN---TQKVEKIIDTIQE 141 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH----HHHHHHHHhcCC---HHHHHHHHHHHHH
Confidence 47788899999999999888777766 4788888888555 456788888884 5555555532222
Q ss_pred Hhhhhhhhh-Hhhhhh--cccchhHHHHHHHHhHhhHHHHHHhhH
Q 021571 238 EIHKLKDEI-KIMSAH--WKLKTKELESQLEKQRRADQELKKRVL 279 (310)
Q Consensus 238 eIakLrdei-ri~SaH--W~~ktKELEsQlekqRR~dQElKkrVl 279 (310)
.++ .-+|| .+||.. =..--.|||..|+.- ..++|-.++|
T Consensus 142 ~~e-~~~EIseaLs~~~~~~~DEdELe~ELe~L--e~e~l~~~ll 183 (191)
T PTZ00446 142 NKD-IQEEINQALSFNLLNNVDDDEIDKELDLL--KEQTMEEKLL 183 (191)
T ss_pred HHH-HHHHHHHHHcCCCCCCCCHHHHHHHHHHH--HHHHHHHHHH
Confidence 222 23344 456533 122346777777743 2356665543
No 117
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=48.47 E-value=1.2e+02 Score=34.52 Aligned_cols=91 Identities=25% Similarity=0.308 Sum_probs=0.0
Q ss_pred ccCCCCCCCCCCccccChhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHH
Q 021571 11 STSSSSSSSSVPAREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQ 90 (310)
Q Consensus 11 ~~~~~~~sss~~~~elDPLLkDL~EKK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLq 90 (310)
|.+.++|-+||+.... +|--.|+.||-+++.++.--+|-+-.-+.+-..-+.-.--||-||.+|+
T Consensus 154 s~s~~~~~~sp~~~~~---------------~~~~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klr 218 (1195)
T KOG4643|consen 154 SRSGKELYKSPYDIVV---------------KKNLHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLR 218 (1195)
T ss_pred cccCCCCCCCcchhhc---------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHHhhHhhh
Q 021571 91 KTLEERNGRLQASACTAEKYLMQLDGLRSQ 120 (310)
Q Consensus 91 K~Leek~~QL~as~~stekyl~eLD~lRSQ 120 (310)
-..++ +..-+-++..|..|||.||-+
T Consensus 219 qe~~e----~l~ea~ra~~yrdeldalre~ 244 (1195)
T KOG4643|consen 219 QEIEE----FLDEAHRADRYRDELDALREQ 244 (1195)
T ss_pred HHHHH----HHHHHHhhhhhhhHHHHHHHh
No 118
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=48.20 E-value=5.4e+02 Score=30.52 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=10.9
Q ss_pred HHHhhhchHHHHHHHHHHHhh
Q 021571 75 AEMKAKNMEDEICKLQKTLEE 95 (310)
Q Consensus 75 AE~kak~ME~Ei~kLqK~Lee 95 (310)
||..+-+|-.-+.+|.+.+++
T Consensus 1610 aE~~~~~a~q~~~eL~~~~e~ 1630 (1758)
T KOG0994|consen 1610 AEKLATSATQQLGELETRMEE 1630 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555554443
No 119
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=47.76 E-value=1.4e+02 Score=26.75 Aligned_cols=78 Identities=23% Similarity=0.264 Sum_probs=0.0
Q ss_pred HhHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhcch----hhhhhHhhhhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHH
Q 021571 121 LAATKATADASAASAQSAQLQCLALVKELDEKNSSL----KEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQ 196 (310)
Q Consensus 121 Ls~tqATAeaSaaSAqsaqlqCl~L~keL~eK~~sL----kEhE~rV~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~ 196 (310)
+.++-+++.++..+++...-+=.....+...+.+.+ .+...++..|..|+++|+.+.+.-+-.-.+...++-+++.
T Consensus 12 l~~~~~~~a~~~~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~ 91 (251)
T PF11932_consen 12 LASSAAAAAATLDQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQ 91 (251)
T ss_pred HHhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH
Q 021571 197 DI 198 (310)
Q Consensus 197 dI 198 (310)
.|
T Consensus 92 qi 93 (251)
T PF11932_consen 92 QI 93 (251)
T ss_pred HH
No 120
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=47.25 E-value=3.8e+02 Score=28.49 Aligned_cols=25 Identities=24% Similarity=0.173 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHH
Q 021571 45 VSLAAELKEVRTRLASQEQCFVKET 69 (310)
Q Consensus 45 vsLaaELKd~R~rLasQEq~~akEt 69 (310)
...+++|+.....|..+-+.+.++.
T Consensus 493 ~~~~~~l~~e~~~l~~~l~~~~~~~ 517 (908)
T COG0419 493 EKEEAELREEIEELEKELRELEEEL 517 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777666666666655555555
No 121
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=47.18 E-value=4.3e+02 Score=29.16 Aligned_cols=159 Identities=19% Similarity=0.327 Sum_probs=90.7
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHhhHhhhHhH-----HHHhhHhhHHhHHHHHHHHHHHHhhhhhhhcchhhhhhHhh
Q 021571 90 QKTLEERNGRLQASACTAEKYLMQLDGLRSQLAA-----TKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVT 164 (310)
Q Consensus 90 qK~Leek~~QL~as~~stekyl~eLD~lRSQLs~-----tqATAeaSaaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~ 164 (310)
++...|--.||-+.+-+--.|...+.+|+.+|.. +.-|+-.-..|-.- -.+..+-..=...|+.+...++
T Consensus 449 ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEk-----k~laQE~~~~~~elKk~qedi~ 523 (786)
T PF05483_consen 449 EKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEK-----KQLAQETSDMALELKKQQEDIN 523 (786)
T ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhhhhHHHHHHHHH
Confidence 4445555567777666666688888888887764 22222222222111 1222222222333444444444
Q ss_pred hhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhhccchhHhhhhhh
Q 021571 165 RLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKD 244 (310)
Q Consensus 165 ~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dIm~Avakag~~~~~El~kil~evspkn~e~inkll~~kD~eIakLrd 244 (310)
.-..|=..+-|.++.=+-.-.|||+|+- .|-+.+.+.|....| -| +-|..|+..|-.-..-+|..|.-|..
T Consensus 524 ~~k~qee~~~kqie~Lee~~~~Lrnele----s~~eel~~k~~Ev~~----kl-~ksEen~r~~e~e~~~k~kq~k~len 594 (786)
T PF05483_consen 524 NSKKQEEKMLKQIENLEETNTQLRNELE----SVKEELKQKGEEVKC----KL-DKSEENARSIECEILKKEKQMKILEN 594 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH----Hh-hhHHHhhHHHHHHHhhhHHHHHHHHH
Confidence 4444444444455555566678888875 445555565553222 22 23566777776667777777777777
Q ss_pred hhHhhhhhcccchhHHHH
Q 021571 245 EIKIMSAHWKLKTKELES 262 (310)
Q Consensus 245 eiri~SaHW~~ktKELEs 262 (310)
.+.-+-..-.+|+|-+|.
T Consensus 595 k~~~LrKqvEnk~K~iee 612 (786)
T PF05483_consen 595 KCNNLRKQVENKNKNIEE 612 (786)
T ss_pred HHHHHHHHHHHHHhHHHH
Confidence 777777777788887775
No 122
>PRK10884 SH3 domain-containing protein; Provisional
Probab=46.89 E-value=2.1e+02 Score=25.97 Aligned_cols=29 Identities=21% Similarity=0.398 Sum_probs=21.1
Q ss_pred HHHHhHHHHHHHHHHHHhhhhhhhhHHHH
Q 021571 39 SFRKNVVSLAAELKEVRTRLASQEQCFVK 67 (310)
Q Consensus 39 sfRRNVvsLaaELKd~R~rLasQEq~~ak 67 (310)
+.|-=+-.|-+||++++++|+...+.+..
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~~~~ 118 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNTWNQ 118 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 45555666778899999999887766553
No 123
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=46.78 E-value=1.8e+02 Score=24.67 Aligned_cols=35 Identities=37% Similarity=0.534 Sum_probs=26.2
Q ss_pred HhHHHHHHHHHHHHhhhhhhhcchhhhhhHhhhhHHHH
Q 021571 133 ASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQL 170 (310)
Q Consensus 133 aSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~LgEQL 170 (310)
..+++-|=-=+.|++.+++|+..++. |++.||+..
T Consensus 80 ~~~q~EldDLL~ll~Dle~K~~kyk~---rLk~LG~eV 114 (136)
T PF04871_consen 80 KEAQSELDDLLVLLGDLEEKRKKYKE---RLKELGEEV 114 (136)
T ss_pred HhhhhhHHHHHHHHHhHHHHHHHHHH---HHHHcCCCc
Confidence 45677777778899999999988774 667777654
No 124
>PRK01156 chromosome segregation protein; Provisional
Probab=46.55 E-value=3.6e+02 Score=28.11 Aligned_cols=55 Identities=9% Similarity=0.143 Sum_probs=28.9
Q ss_pred CcchHHhhhhhhccchhHhhhhhhhhHhhhhhcccchhH---HHHHHHHhHhhHHHHH
Q 021571 221 SPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKE---LESQLEKQRRADQELK 275 (310)
Q Consensus 221 spkn~e~inkll~~kD~eIakLrdeiri~SaHW~~ktKE---LEsQlekqRR~dQElK 275 (310)
.+..++.++.-+.....++..|+.+|.-+.+-+...-+. ++.++++.+++-.+++
T Consensus 672 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~~~l~ 729 (895)
T PRK01156 672 ITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESMK 729 (895)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666666655544433332 4444444444444433
No 125
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=45.83 E-value=1.9e+02 Score=24.63 Aligned_cols=80 Identities=24% Similarity=0.408 Sum_probs=45.1
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHH-HHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhhhHH
Q 021571 30 LKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVK-ETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAE 108 (310)
Q Consensus 30 LkDL~EKK~sfRRNVvsLaaELKd~R~rLasQEq~~ak-Et~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~ste 108 (310)
+.+|..|-..+=..|-.+-..|+++...+..-+..+.. |+.+ .|..-||+|+-...+.|.+-.+.|+-....++
T Consensus 37 I~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~-----rriq~LEeele~ae~~L~e~~ekl~e~d~~ae 111 (143)
T PF12718_consen 37 ITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLN-----RRIQLLEEELEEAEKKLKETTEKLREADVKAE 111 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34444444444455555555555555555554444432 4333 34456777777777777777777776666666
Q ss_pred HHHHHH
Q 021571 109 KYLMQL 114 (310)
Q Consensus 109 kyl~eL 114 (310)
.|-..+
T Consensus 112 ~~eRkv 117 (143)
T PF12718_consen 112 HFERKV 117 (143)
T ss_pred HHHHHH
Confidence 654433
No 126
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=45.55 E-value=1.5e+02 Score=25.82 Aligned_cols=71 Identities=21% Similarity=0.344 Sum_probs=46.9
Q ss_pred hhhhhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhh
Q 021571 29 LLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQA 102 (310)
Q Consensus 29 LLkDL~EKK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~a 102 (310)
.|.+|...=..+..+|-.+..+|++-|.+|..-...|..-.. .+.......--+|..|++.+++-++++.+
T Consensus 111 ~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~---~l~~~l~~~~g~I~~L~~~I~~~~~~I~~ 181 (184)
T PF05791_consen 111 IIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVD---ELQSILAGENGDIPQLQKQIENLNEEIKK 181 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHTT--HHHHHHHHHHHTGGG-G
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHhcccCCHHHHHHHHHHHHHHHHh
Confidence 356677777777788888888888888888888777764442 24455555556677777777666666554
No 127
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=44.69 E-value=1.5e+02 Score=23.27 Aligned_cols=87 Identities=20% Similarity=0.343 Sum_probs=58.0
Q ss_pred hchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhcchhhh
Q 021571 80 KNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEH 159 (310)
Q Consensus 80 k~ME~Ei~kLqK~Leek~~QL~as~~stekyl~eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~keL~eK~~sLkEh 159 (310)
..+++.+..=.+.|.++..+|+.+...-++|+++-|.=|.. |.-.|........++-.-++.|......|+
T Consensus 24 ~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~r-------A~k~a~~e~k~~~~k~~ei~~l~~~l~~l~-- 94 (126)
T PF13863_consen 24 ERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRER-------AEKRAEEEKKKKEEKEAEIKKLKAELEELK-- 94 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 34556666667888999999999999999999988765432 333444445555666666666665555554
Q ss_pred hhHhhhhHHHHHhHHHH
Q 021571 160 EDRVTRLGQQLDNLQKD 176 (310)
Q Consensus 160 E~rV~~LgEQLD~LQKd 176 (310)
.....+++.+..+++|
T Consensus 95 -~~~~k~e~~l~~~~~Y 110 (126)
T PF13863_consen 95 -SEISKLEEKLEEYKKY 110 (126)
T ss_pred -HHHHHHHHHHHHHHHH
Confidence 4456666666666555
No 128
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=44.53 E-value=84 Score=28.95 Aligned_cols=30 Identities=43% Similarity=0.723 Sum_probs=17.9
Q ss_pred chhHhhhhhhhhHhhhhhcccchhHHHHHHHHhH
Q 021571 235 KDEEIHKLKDEIKIMSAHWKLKTKELESQLEKQR 268 (310)
Q Consensus 235 kD~eIakLrdeiri~SaHW~~ktKELEsQlekqR 268 (310)
||.+|+++.++| .--.++.+||+...+..+
T Consensus 105 kd~~i~~~~~~l----~~~~~r~~el~~~r~~e~ 134 (196)
T PF15272_consen 105 KDREIRTLQDEL----LSLELRNKELQNERERER 134 (196)
T ss_pred hHHHHHHHHHHH----HHHHHHHHHHHhHHHHHH
Confidence 467777777776 223456666666555443
No 129
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=44.40 E-value=3e+02 Score=26.60 Aligned_cols=23 Identities=30% Similarity=0.590 Sum_probs=15.8
Q ss_pred hhchHHHHHHHHHHHhhhhhhhh
Q 021571 79 AKNMEDEICKLQKTLEERNGRLQ 101 (310)
Q Consensus 79 ak~ME~Ei~kLqK~Leek~~QL~ 101 (310)
...||.+|..|.+.+.++.+.|.
T Consensus 274 i~~~e~~i~~L~~ai~~k~~~lk 296 (384)
T PF03148_consen 274 IAEMEKNIEDLEKAIRDKEGPLK 296 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHH
Confidence 44567777777777777777654
No 130
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=43.97 E-value=5.3e+02 Score=29.24 Aligned_cols=64 Identities=22% Similarity=0.187 Sum_probs=36.0
Q ss_pred hhhhhhhHhhhhhcccchhHH---HHHHHHhHhhHHHHHHhhHHHHHHHHHHHHhhHHHHHHHhhhh
Q 021571 240 HKLKDEIKIMSAHWKLKTKEL---ESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRVMLYIS 303 (310)
Q Consensus 240 akLrdeiri~SaHW~~ktKEL---EsQlekqRR~dQElKkrVlkLEfclqEaRsqtrKlQr~~~~~~ 303 (310)
..|+++++=...-..-+...+ +++++.-++.-.+...++-..+=-+++++..+.-...-..|-+
T Consensus 336 ~el~~ql~~~~~~a~~~~~~~~~a~~~~e~~~~~~~~~~~r~~~~~~~l~~~~~el~~~a~~~~~~~ 402 (1353)
T TIGR02680 336 ERARADAEALQAAAADARQAIREAESRLEEERRRLDEEAGRLDDAERELRAAREQLARAAERAGLSP 402 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 344444444333343444333 5555666666666666777777667777777766655554444
No 131
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=42.96 E-value=5.5e+02 Score=29.13 Aligned_cols=40 Identities=20% Similarity=0.205 Sum_probs=23.7
Q ss_pred HHHHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhhhh
Q 021571 111 LMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELD 150 (310)
Q Consensus 111 l~eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~keL~ 150 (310)
..+|+.++.|+......++..+..+..++-+=-.+-.+++
T Consensus 332 ~~eL~el~~ql~~~~~~a~~~~~~~~~a~~~~e~~~~~~~ 371 (1353)
T TIGR02680 332 AEELERARADAEALQAAAADARQAIREAESRLEEERRRLD 371 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888777666666555555544444333333333
No 132
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=42.46 E-value=2.7e+02 Score=25.36 Aligned_cols=11 Identities=9% Similarity=0.157 Sum_probs=5.4
Q ss_pred ccchhHhhhhh
Q 021571 233 VVKDEEIHKLK 243 (310)
Q Consensus 233 ~~kD~eIakLr 243 (310)
.|...+|.+++
T Consensus 315 ~v~~~~~~~i~ 325 (423)
T TIGR01843 315 KLSPKDIGFVH 325 (423)
T ss_pred EEChhhhhhhC
Confidence 34445555544
No 133
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=41.65 E-value=3.1e+02 Score=25.84 Aligned_cols=159 Identities=24% Similarity=0.277 Sum_probs=0.0
Q ss_pred hhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhh---------hHHHHHHHHhhHhhhHhHHHH--------------
Q 021571 70 LTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASAC---------TAEKYLMQLDGLRSQLAATKA-------------- 126 (310)
Q Consensus 70 ~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~---------stekyl~eLD~lRSQLs~tqA-------------- 126 (310)
.....+..-..-+++++..+++.|++-..+|+++-. .++--...|.++.+|+..+++
T Consensus 164 ~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~ 243 (444)
T TIGR03017 164 LKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKEGGSSG 243 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q ss_pred ----hhHhhHHhHHHHHHHHHHHHhhhhhhhcchhhhhhHhhhhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHHHHHH
Q 021571 127 ----TADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTI 202 (310)
Q Consensus 127 ----TAeaSaaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dIm~Av 202 (310)
+.-.....-+...-+=..+-.+|.+-...+++.--.|..+-.|++.+++.+..
T Consensus 244 ~~~~~~~~~~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~----------------------- 300 (444)
T TIGR03017 244 KDALPEVIANPIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNA----------------------- 300 (444)
T ss_pred cccchhhhcChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH-----------------------
Q ss_pred HHhcCCchhHHHHhhhccCcchHHhhhhhhccchhHhhhhhhhhHhhhhhcccchhHHHHHHHHhHhhHHHHHHhhHHHH
Q 021571 203 AKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQLEKQRRADQELKKRVLKLE 282 (310)
Q Consensus 203 akag~~~~~El~kil~evspkn~e~inkll~~kD~eIakLrdeiri~SaHW~~ktKELEsQlekqRR~dQElKkrVlkLE 282 (310)
||+++...+..-..-=..+-.+|+.+++.++..-..+-..
T Consensus 301 -----------------------------------e~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~----- 340 (444)
T TIGR03017 301 -----------------------------------EIKKVTSSVGTNSRILKQREAELREALENQKAKVLELNRQ----- 340 (444)
T ss_pred -----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q ss_pred HHHHHHHHhhHHHHH
Q 021571 283 FCLQEARAQTRKLQR 297 (310)
Q Consensus 283 fclqEaRsqtrKlQr 297 (310)
..+...|+|
T Consensus 341 ------~~~~~~L~r 349 (444)
T TIGR03017 341 ------RDEMSVLQR 349 (444)
T ss_pred ------HHHHHHHHH
No 134
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=40.82 E-value=1.2e+02 Score=30.13 Aligned_cols=71 Identities=21% Similarity=0.346 Sum_probs=59.7
Q ss_pred ccchhHhhhhhhhhHhhhhhcccchhHHHHHHHHh-HhhHHHHHHhhHHHHHHHHHHHHhhHHHHHHHhhhh
Q 021571 233 VVKDEEIHKLKDEIKIMSAHWKLKTKELESQLEKQ-RRADQELKKRVLKLEFCLQEARAQTRKLQRVMLYIS 303 (310)
Q Consensus 233 ~~kD~eIakLrdeiri~SaHW~~ktKELEsQlekq-RR~dQElKkrVlkLEfclqEaRsqtrKlQr~~~~~~ 303 (310)
.+..+--.-+|..++.|-+|-.-+-+||=+.++.+ .|--+||-.+.-.||--||--|.--.-.|||.+|-|
T Consensus 31 ~~r~~teelIr~rVrq~V~hVqaqEreLLe~v~~rYqR~y~ema~~L~~LeavLqRir~G~~LVekM~~YAS 102 (324)
T PF12126_consen 31 RARADTEELIRARVRQVVAHVQAQERELLEAVEARYQRDYEEMAGQLGRLEAVLQRIRTGGALVEKMKLYAS 102 (324)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHhcc
Confidence 33444445578899999999999999988888764 566789999999999999999999999999999965
No 135
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=40.72 E-value=50 Score=30.29 Aligned_cols=67 Identities=15% Similarity=0.182 Sum_probs=49.0
Q ss_pred HhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhhH
Q 021571 55 RTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQL 121 (310)
Q Consensus 55 R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~stekyl~eLD~lRSQL 121 (310)
..|++..|+.+..-+..--+-..+...|..||.+|.-.+|+-+.||+--.----.+-.+||.+.+++
T Consensus 39 ~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~~~ 105 (263)
T PRK10803 39 EDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSSGG 105 (263)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3666766766654444434456677888999999999999988888876666666778999877655
No 136
>PRK11519 tyrosine kinase; Provisional
Probab=39.34 E-value=4.6e+02 Score=27.23 Aligned_cols=47 Identities=15% Similarity=0.190 Sum_probs=24.0
Q ss_pred HhhhchHHHHHHHHHHHhhhhhhhhhhhh---------hHHHHHHHHhhHhhhHhH
Q 021571 77 MKAKNMEDEICKLQKTLEERNGRLQASAC---------TAEKYLMQLDGLRSQLAA 123 (310)
Q Consensus 77 ~kak~ME~Ei~kLqK~Leek~~QL~as~~---------stekyl~eLD~lRSQLs~ 123 (310)
.-..-+++++..+++.|++-...|.++-. .++.++..+.++++|+..
T Consensus 267 ~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~ 322 (719)
T PRK11519 267 KSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNE 322 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 33445555666666555555444443221 233355556666666654
No 137
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=39.10 E-value=1.8e+02 Score=30.16 Aligned_cols=63 Identities=25% Similarity=0.216 Sum_probs=42.3
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHhhH--HHHHHhh-----hchHHHHHHHHHHHhhhhhhhhhhhhhHHHHH
Q 021571 48 AAELKEVRTRLASQEQCFVKETLTR--QEAEMKA-----KNMEDEICKLQKTLEERNGRLQASACTAEKYL 111 (310)
Q Consensus 48 aaELKd~R~rLasQEq~~akEt~tR--k~AE~ka-----k~ME~Ei~kLqK~Leek~~QL~as~~stekyl 111 (310)
.+-|-+++.+||.+|+-...=+..+ .+||.++ ---|-|+.+||+..-+.|+..-+ ..+|++|+
T Consensus 12 dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~-~~a~~~~~ 81 (459)
T KOG0288|consen 12 DQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR-EEATEKTL 81 (459)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3445677777877776544333222 4455543 34688999999999998888766 67777776
No 138
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=39.02 E-value=6.3e+02 Score=28.68 Aligned_cols=167 Identities=21% Similarity=0.254 Sum_probs=71.3
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHH
Q 021571 33 LNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLM 112 (310)
Q Consensus 33 L~EKK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~stekyl~ 112 (310)
|.||---||-+=+.|-.-.+|+--.|.+++++.. .++..-.++.+-|-+++.....-+--.+.-+..-+++-.
T Consensus 429 lkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~-------~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~ 501 (980)
T KOG0980|consen 429 LKEKYTELRQEHADLLRKYDDIQKQLESAEQSID-------DVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQ 501 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444445566666666666666666666666554 233333344444444443333322122222222333444
Q ss_pred HHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhcchhhhhhHh-----hhhHHHHHhHHHHHhhhhhhHHhH
Q 021571 113 QLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRV-----TRLGQQLDNLQKDLQARESSQKQL 187 (310)
Q Consensus 113 eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV-----~~LgEQLD~LQKdLqaRE~SQkQL 187 (310)
||.-+--++...+-+-.-++ .+..++++ -|...|.+|+..+.+--.+. .++.-|-+..|-.|..++.++-+.
T Consensus 502 El~~l~~e~~~lq~~~~~~~-qs~~~~~~--~l~~~l~~KD~~~~~~~~~~~e~~~~~~e~e~si~ql~l~~~~~~ea~~ 578 (980)
T KOG0980|consen 502 ELALLLIELEELQRTLSNLA-QSHNNQLA--QLEDLLKQKDRLAAELVAREEEREALRLEAERSINQLELDSSASTEAGI 578 (980)
T ss_pred HHHHHHHHHHHHHHHhhhHH-HHHHHHHH--HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcccccchHHHH
Confidence 44444444444444422221 22233332 33445566666554322221 222222222233333343332222
Q ss_pred hHHHHHHHHHHHHHHHHhcCCc
Q 021571 188 KDEVFRIEQDIMQTIAKAGVNK 209 (310)
Q Consensus 188 KDeVlRIE~dIm~Avakag~~~ 209 (310)
.---.-.--+|.++++..|.+.
T Consensus 579 tQ~~~~~~~~il~~~~~~~~q~ 600 (980)
T KOG0980|consen 579 TQLQDDLNDPILDGSLASGIQA 600 (980)
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 1111111247788888877543
No 139
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=38.73 E-value=2.6e+02 Score=24.26 Aligned_cols=19 Identities=21% Similarity=0.331 Sum_probs=10.0
Q ss_pred HHHHhhHhhhHhHHHHhhH
Q 021571 111 LMQLDGLRSQLAATKATAD 129 (310)
Q Consensus 111 l~eLD~lRSQLs~tqATAe 129 (310)
..+++.+|.+|..-+.+..
T Consensus 90 r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 90 RERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3555555655555554444
No 140
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=38.70 E-value=10 Score=38.78 Aligned_cols=36 Identities=25% Similarity=0.446 Sum_probs=0.0
Q ss_pred ccChhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhhh
Q 021571 25 EIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLAS 60 (310)
Q Consensus 25 elDPLLkDL~EKK~sfRRNVvsLaaELKd~R~rLas 60 (310)
.|.-|=..+.--+..+++-.+.+-.++.+...++..
T Consensus 69 ~l~~Le~e~~~~~~e~~~~~~~le~~~~~l~~~~~~ 104 (722)
T PF05557_consen 69 QLNQLEYELEQLKQEHERAQLELEKELRELQRQLER 104 (722)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666667777777666666665555444443
No 141
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=38.14 E-value=1.6e+02 Score=30.61 Aligned_cols=30 Identities=40% Similarity=0.463 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHhhhchHHHHHHHHHHHh
Q 021571 65 FVKETLTRQEAEMKAKNMEDEICKLQKTLE 94 (310)
Q Consensus 65 ~akEt~tRk~AE~kak~ME~Ei~kLqK~Le 94 (310)
|.++-..-.+.|.|.+.++++|.++...+.
T Consensus 26 f~~ev~r~de~erkL~~le~~I~k~~~~~~ 55 (759)
T PF01496_consen 26 FVNEVRRCDEMERKLRFLEEEIKKLKIPLP 55 (759)
T ss_dssp ------------------------------
T ss_pred hhhccccHHHHHHHHHHHHHHHHHhcCccc
Confidence 333333334444555555555555544444
No 142
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=37.96 E-value=1.5e+02 Score=27.44 Aligned_cols=34 Identities=24% Similarity=0.482 Sum_probs=27.9
Q ss_pred chhhhhhHhhhhHHHHHhHHHHHhhhhhhHHhHh
Q 021571 155 SLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLK 188 (310)
Q Consensus 155 sLkEhE~rV~~LgEQLD~LQKdLqaRE~SQkQLK 188 (310)
.|+.=.+-+..+++|.+-|+.+|..|+--..||+
T Consensus 161 ~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 161 NLKSVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566677889999999999999999987666664
No 143
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=37.86 E-value=3.2e+02 Score=27.43 Aligned_cols=50 Identities=28% Similarity=0.427 Sum_probs=38.0
Q ss_pred HhhhhhhccchhHhhhhhhhhHhhhhhc----ccchhHHHHHHHHhHhhHHHHHHhhHHHH
Q 021571 226 ERINKLLVVKDEEIHKLKDEIKIMSAHW----KLKTKELESQLEKQRRADQELKKRVLKLE 282 (310)
Q Consensus 226 e~inkll~~kD~eIakLrdeiri~SaHW----~~ktKELEsQlekqRR~dQElKkrVlkLE 282 (310)
|-+|.++.+--.||..||.++.-|..-+ .-|.++++.-+|. .+-||-|||
T Consensus 265 eqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es-------~qtRisklE 318 (395)
T PF10267_consen 265 EQLNDLTELHQNEIYNLKQELASMEEKMAYQSYERARDIWEVMES-------CQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHH-------HHHHHHHHH
Confidence 4578888899999999999997776533 3455666655553 678999999
No 144
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=37.69 E-value=2.3e+02 Score=23.30 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=14.1
Q ss_pred hhhhhhHhhhhHHHHHhHHHHHh
Q 021571 156 LKEHEDRVTRLGQQLDNLQKDLQ 178 (310)
Q Consensus 156 LkEhE~rV~~LgEQLD~LQKdLq 178 (310)
+.+-+.|+.-|.+|=..|..-|+
T Consensus 107 ~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 107 LSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445667777777666665554
No 145
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=36.59 E-value=5.4e+02 Score=27.20 Aligned_cols=104 Identities=20% Similarity=0.315 Sum_probs=49.7
Q ss_pred HHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhhHhHHHHhh-----HhhHHhHHHHHH--HHHHH
Q 021571 73 QEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATA-----DASAASAQSAQL--QCLAL 145 (310)
Q Consensus 73 k~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~stekyl~eLD~lRSQLs~tqATA-----eaSaaSAqsaql--qCl~L 145 (310)
-.+|...+.+++|+..|.+.+++.-.-+...-.....|+.-|..+-..++.+++-- |..-.-++..+| +--.+
T Consensus 109 a~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~ 188 (546)
T KOG0977|consen 109 AKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARA 188 (546)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 34556666677777777777766544333333333333433333333333332211 111111122221 12233
Q ss_pred HhhhhhhhcchhhhhhHhhhhHHHHHhHHHH
Q 021571 146 VKELDEKNSSLKEHEDRVTRLGQQLDNLQKD 176 (310)
Q Consensus 146 ~keL~eK~~sLkEhE~rV~~LgEQLD~LQKd 176 (310)
-++|++-...-.+++.+|+.|-|-|+.++..
T Consensus 189 r~~ld~Etllr~d~~n~~q~Lleel~f~~~~ 219 (546)
T KOG0977|consen 189 RKQLDDETLLRVDLQNRVQTLLEELAFLKRI 219 (546)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 4555555655666666777777766666543
No 146
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=36.54 E-value=2.9e+02 Score=24.08 Aligned_cols=127 Identities=20% Similarity=0.267 Sum_probs=79.1
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhhhHHH
Q 021571 30 LKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEK 109 (310)
Q Consensus 30 LkDL~EKK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~stek 109 (310)
||----++-+|...|-+|=+||..+..-+.. ...+.+| +..-+-+|+.+|+.+-..|.+-...|.+..+--+.
T Consensus 12 LK~~~~e~dsle~~v~~LEreLe~~q~~~e~----~~~daEn---~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~ 84 (140)
T PF10473_consen 12 LKESESEKDSLEDHVESLERELEMSQENKEC----LILDAEN---SKAEIETLEEELEELTSELNQLELELDTLRSEKEN 84 (140)
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHhHHH----HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555567788888899999998877654322 2333333 22223458888888888888777777666555555
Q ss_pred HHHHHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhhhhh-hhcchhhhhhHhhhhHHHHHhHH
Q 021571 110 YLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDE-KNSSLKEHEDRVTRLGQQLDNLQ 174 (310)
Q Consensus 110 yl~eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~keL~e-K~~sLkEhE~rV~~LgEQLD~LQ 174 (310)
.-++|.....+++-- .+....|..+++.+-. |.--..+....|..|..||..|+
T Consensus 85 L~k~lq~~q~kv~eL-----------E~~~~~~~~~l~~~E~ek~q~~e~~~~~ve~L~~ql~~L~ 139 (140)
T PF10473_consen 85 LDKELQKKQEKVSEL-----------ESLNSSLENLLQEKEQEKVQLKEESKSAVEMLQKQLKELN 139 (140)
T ss_pred HHHHHHHHHHHHHHH-----------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 667777766665533 2334456666665543 44555566666777766666553
No 147
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=35.97 E-value=2.3e+02 Score=29.14 Aligned_cols=68 Identities=24% Similarity=0.322 Sum_probs=53.3
Q ss_pred HhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhhHhHHH
Q 021571 55 RTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATK 125 (310)
Q Consensus 55 R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~stekyl~eLD~lRSQLs~tq 125 (310)
..++..--+.|.+|-.. .-.+.+.++..|.+|+++-++-..+|.++...|..++.+.+.|+.|...+.
T Consensus 26 E~~~l~~~~~~L~~f~~---v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~ 93 (618)
T PF06419_consen 26 EKRLLKINQEFLKEFSP---VNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELE 93 (618)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445544433 556788999999999999999999999999999999999999999876544
No 148
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=35.54 E-value=2.8e+02 Score=23.69 Aligned_cols=78 Identities=23% Similarity=0.362 Sum_probs=52.1
Q ss_pred HhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhhH
Q 021571 42 KNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQL 121 (310)
Q Consensus 42 RNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~stekyl~eLD~lRSQL 121 (310)
|.|..|+..+.+ .=++-.+.-.+.+...+ ++.|.||.++.++-..+.++...+-..+. .+.+++++-.+|
T Consensus 27 ~~~l~Lc~R~Q~-HL~~cA~~Va~~Q~~L~-----~riKevd~~~~~l~~~~~erqk~~~k~ae----~L~kv~els~~L 96 (131)
T PF10158_consen 27 RPVLRLCSRYQE-HLNQCAEAVAFDQNALA-----KRIKEVDQEIAKLLQQMVERQKRFAKFAE----QLEKVNELSQQL 96 (131)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 567777777765 22222333333333332 67899999999999999999877655544 456688888888
Q ss_pred hHHHHhhH
Q 021571 122 AATKATAD 129 (310)
Q Consensus 122 s~tqATAe 129 (310)
..++..=+
T Consensus 97 ~~~~~lL~ 104 (131)
T PF10158_consen 97 SRCQSLLN 104 (131)
T ss_pred HHHHHHHH
Confidence 87776433
No 149
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=35.38 E-value=5e+02 Score=26.44 Aligned_cols=142 Identities=20% Similarity=0.296 Sum_probs=86.9
Q ss_pred HHHHHHhhhhhhhcchhhhhhHhhhhHHHHHhHHHHHhhhhh----hHHhHhHHHHHHHHHHHHHHHHhcCCchhHHHHh
Q 021571 141 QCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARES----SQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKL 216 (310)
Q Consensus 141 qCl~L~keL~eK~~sLkEhE~rV~~LgEQLD~LQKdLqaRE~----SQkQLKDeVlRIE~dIm~Avakag~~~~~El~ki 216 (310)
+.-.+..+|++=..+=.+|...|..|.+....++|.+-+.-. +-..|-+.+-.||.++.+...-...|.--+-+.+
T Consensus 116 ~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~ei 195 (560)
T PF06160_consen 116 DIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTENGDYLEAREI 195 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 344566777776777778899999999999999999988764 5667788888899888776655444444444444
Q ss_pred hhccCcc------hHHhhhhhh----ccchhHhhhhhhhhHhh-hhhcccchhHHHHHHHHhHhhHHHHHHhhHHHH
Q 021571 217 LDEVSPK------NFERINKLL----VVKDEEIHKLKDEIKIM-SAHWKLKTKELESQLEKQRRADQELKKRVLKLE 282 (310)
Q Consensus 217 l~evspk------n~e~inkll----~~kD~eIakLrdeiri~-SaHW~~ktKELEsQlekqRR~dQElKkrVlkLE 282 (310)
|..+.-. .+++|=.++ +.=.+.++.|++-++=| ..|+.+..-+++.+++.-+..-.+....+-.|+
T Consensus 196 l~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~ 272 (560)
T PF06160_consen 196 LEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKNLE 272 (560)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4433211 111111111 12234555555555433 345666666666666666666556655554443
No 150
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=35.00 E-value=8e+02 Score=28.72 Aligned_cols=62 Identities=18% Similarity=0.348 Sum_probs=40.0
Q ss_pred hhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhH---HHHHHhhhchHHHHHHH
Q 021571 28 PLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTR---QEAEMKAKNMEDEICKL 89 (310)
Q Consensus 28 PLLkDL~EKK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tR---k~AE~kak~ME~Ei~kL 89 (310)
|-..+|.-....+--.|-++|.++......++.+|.-..+.+.+- ++-+.....|+-|+..+
T Consensus 813 ~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~ 877 (1293)
T KOG0996|consen 813 ERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEEL 877 (1293)
T ss_pred HhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 334567777777888888888888888888888888766554422 22233344445455444
No 151
>PF12522 UL73_N: Cytomegalovirus glycoprotein N terminal; InterPro: IPR021003 This domain family is found in viruses, and is approximately 30 amino acids in length. The signature is found in association with PF03554 from PFAM. This family is an envelope glycoprotein of (Human herpesvirus 5) [].
Probab=34.84 E-value=25 Score=23.82 Aligned_cols=14 Identities=50% Similarity=0.608 Sum_probs=6.5
Q ss_pred CCCCCccccCCCCC
Q 021571 4 SGHRSSMSTSSSSS 17 (310)
Q Consensus 4 ~~~~~~~~~~~~~~ 17 (310)
+|..||.|||+++|
T Consensus 13 s~n~sSTsts~tt~ 26 (27)
T PF12522_consen 13 SGNNSSTSTSATTP 26 (27)
T ss_pred ccCCccccccccCC
Confidence 44444444444443
No 152
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=34.55 E-value=1.2e+02 Score=23.36 Aligned_cols=24 Identities=38% Similarity=0.459 Sum_probs=19.8
Q ss_pred hhhhhccchhHhhhhhhhhHhhhh
Q 021571 228 INKLLVVKDEEIHKLKDEIKIMSA 251 (310)
Q Consensus 228 inkll~~kD~eIakLrdeiri~Sa 251 (310)
+-+.|.=||+.|+.|..|-.-+|-
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk 26 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSK 26 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHH
Confidence 345677899999999999988874
No 153
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=34.31 E-value=13 Score=37.60 Aligned_cols=34 Identities=24% Similarity=0.454 Sum_probs=0.0
Q ss_pred hhHhhhhHHHHHhHHHHHhhhhhhHHhHhHHHHH
Q 021571 160 EDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFR 193 (310)
Q Consensus 160 E~rV~~LgEQLD~LQKdLqaRE~SQkQLKDeVlR 193 (310)
+.++..+..+|+.|++....|--.-.+++.++..
T Consensus 141 ~~~l~~l~~~l~~L~~e~~~R~~~v~~l~~~I~~ 174 (619)
T PF03999_consen 141 LEELEELRQHLQRLQEEKERRLEEVRELREEIIS 174 (619)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788888999988888887666666655443
No 154
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=34.16 E-value=1.2e+02 Score=32.97 Aligned_cols=115 Identities=26% Similarity=0.340 Sum_probs=58.3
Q ss_pred hhhhHHHHHhHHHH-Hhhhh----hhHHhHhHHHHHHHHHHHHHHHHhcCCc-hhHHHHhhh-ccCcchHH--hhhhhhc
Q 021571 163 VTRLGQQLDNLQKD-LQARE----SSQKQLKDEVFRIEQDIMQTIAKAGVNK-DCELRKLLD-EVSPKNFE--RINKLLV 233 (310)
Q Consensus 163 V~~LgEQLD~LQKd-LqaRE----~SQkQLKDeVlRIE~dIm~Avakag~~~-~~El~kil~-evspkn~e--~inkll~ 233 (310)
+.-|.+.|..|.+. +.|++ ++---|++-+-.+-.||-+-++.|+... =-+=+.+|. |+|--|.. -||-.|-
T Consensus 431 ~~~Le~elekLk~eilKAk~s~~~~~~~~L~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~sKa~~~~~~~~~~L~ 510 (762)
T PLN03229 431 VRELEGEVEKLKEQILKAKESSSKPSELALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKANSQDQLMHPVLM 510 (762)
T ss_pred CccHHHHHHHHHHHHHhcccccCCCCChHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccccccccHHHH
Confidence 34566666666543 56663 3344455556655555555444444211 112223333 55555542 2444442
Q ss_pred cchhHhhhhhhhhHh-hhh-----hcccchhHHHHHHH---------HhHhhHHHHHHhhHH
Q 021571 234 VKDEEIHKLKDEIKI-MSA-----HWKLKTKELESQLE---------KQRRADQELKKRVLK 280 (310)
Q Consensus 234 ~kD~eIakLrdeiri-~Sa-----HW~~ktKELEsQle---------kqRR~dQElKkrVlk 280 (310)
|.|.+|++||.= +++ .-+.|-.-|-.... +--.-+||+||||..
T Consensus 511 ---eK~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~~~~~~s~g~~~a~~Lk~ei~kki~e 569 (762)
T PLN03229 511 ---EKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFSRAKALSEKKSKAEKLKAEINKKFKE 569 (762)
T ss_pred ---HHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHH
Confidence 239999999842 222 33333333332222 233458999999876
No 155
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=33.89 E-value=4.5e+02 Score=25.55 Aligned_cols=19 Identities=26% Similarity=0.557 Sum_probs=9.3
Q ss_pred HHHhHHHHHHHHHHHHhhh
Q 021571 40 FRKNVVSLAAELKEVRTRL 58 (310)
Q Consensus 40 fRRNVvsLaaELKd~R~rL 58 (310)
-|+..+..|..|-+++.+|
T Consensus 46 Ar~~A~~fA~~ld~~~~kl 64 (301)
T PF06120_consen 46 ARQEAIEFADSLDELKEKL 64 (301)
T ss_pred HHHHHHHHHHhhHHHHHHH
Confidence 3444445555555555444
No 156
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=33.82 E-value=1.7e+02 Score=24.75 Aligned_cols=85 Identities=24% Similarity=0.438 Sum_probs=56.5
Q ss_pred HhhhhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhhccchhHhhh
Q 021571 162 RVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHK 241 (310)
Q Consensus 162 rV~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dIm~Avakag~~~~~El~kil~evspkn~e~inkll~~kD~eIak 241 (310)
.+.++..++..++..+..-+-...++.+|+.+.-...=+. ++......+|+.=+.++.-+ .+.+=.+|.=|.+++..
T Consensus 24 ~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~--~~~~~~~~~L~~el~~l~~r-y~t~LellGEK~E~veE 100 (120)
T PF12325_consen 24 QLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL--RALKKEVEELEQELEELQQR-YQTLLELLGEKSEEVEE 100 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH-HHHHHHHhcchHHHHHH
Confidence 3556667777788888888888889999988765443222 23334445666666655442 34455667779999999
Q ss_pred hhhhhHhh
Q 021571 242 LKDEIKIM 249 (310)
Q Consensus 242 Lrdeiri~ 249 (310)
|+.+|.=|
T Consensus 101 L~~Dv~Dl 108 (120)
T PF12325_consen 101 LRADVQDL 108 (120)
T ss_pred HHHHHHHH
Confidence 99888644
No 157
>cd08784 Death_DRs Death Domain of Death Receptors. Death domain (DD) found in death receptor proteins. Death receptors are members of the tumor necrosis factor (TNF) receptor superfamily, characterized by having a cytoplasmic DD. Known members of the family are Fas (CD95/APO-1), TNF-receptor 1 (TNFR1/TNFRSF1A/p55/CD120a), TNF-related apoptosis-inducing ligand receptor 1 (TRAIL-R1 /DR4), and receptor 2 (TRAIL-R2/DR5/APO-2/KILLER), as well as Death Receptor 3 (DR3/APO-3/TRAMP/WSL-1/LARD). They are involved in apoptosis signaling pathways. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=33.57 E-value=33 Score=26.19 Aligned_cols=31 Identities=23% Similarity=0.255 Sum_probs=27.4
Q ss_pred HHhhhccCcchHHhhhhhhccchhHhhhhhh
Q 021571 214 RKLLDEVSPKNFERINKLLVVKDEEIHKLKD 244 (310)
Q Consensus 214 ~kil~evspkn~e~inkll~~kD~eIakLrd 244 (310)
-.+.++||++....+-+.|.++|.+|...+.
T Consensus 3 ~~v~~~v~~~~Wk~laR~LGls~~~I~~ie~ 33 (79)
T cd08784 3 FDVFEEVPFDQHKRFFRKLGLSDNEIKVAEL 33 (79)
T ss_pred HHHHHHCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4678999999999999999999999987654
No 158
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=33.27 E-value=3.6e+02 Score=24.22 Aligned_cols=32 Identities=25% Similarity=0.443 Sum_probs=15.3
Q ss_pred HhhhhhhhcchhhhhhHhhhhHHHHHhHHHHH
Q 021571 146 VKELDEKNSSLKEHEDRVTRLGQQLDNLQKDL 177 (310)
Q Consensus 146 ~keL~eK~~sLkEhE~rV~~LgEQLD~LQKdL 177 (310)
..+|..=..-|-+.+.++..|..||++..+.+
T Consensus 124 ~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~ 155 (194)
T PF15619_consen 124 QRKLSQLEQKLQEKEKKIQELEKQLELENKSF 155 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 33444444444455555555555555544443
No 159
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=33.11 E-value=7.9e+02 Score=28.09 Aligned_cols=118 Identities=23% Similarity=0.330 Sum_probs=76.7
Q ss_pred ChhhhhhHHHHHHHHHhHHHHHHHHHHHHh---hhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhh
Q 021571 27 DPLLKDLNEKKQSFRKNVVSLAAELKEVRT---RLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQAS 103 (310)
Q Consensus 27 DPLLkDL~EKK~sfRRNVvsLaaELKd~R~---rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~as 103 (310)
|-|+||+.+--..+|+.|.+ +|. -.-+||+... +.--+++...+...||+||.-+.+.|.+.-+.+-.-
T Consensus 403 ~~llKd~~~EIerLK~dl~A-------aReKnGvyisee~y~~-~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~ 474 (1041)
T KOG0243|consen 403 KTLLKDLYEEIERLKRDLAA-------AREKNGVYISEERYTQ-EEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQ 474 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------hHhhCceEechHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 46899999988888877643 443 3556666543 333456777788888888888888888776665433
Q ss_pred hhhHHHHHHHHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhcchhhhhhHhhhh
Q 021571 104 ACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRL 166 (310)
Q Consensus 104 ~~stekyl~eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~L 166 (310)
.-..+..-++++.+.++|.- .--.|..+-+++.+=+.-|+++|.-+.+.
T Consensus 475 ~~~~~~l~~~~~~~k~~L~~--------------~~~el~~~~ee~~~~~~~l~~~e~ii~~~ 523 (1041)
T KOG0243|consen 475 LEIKELLKEEKEKLKSKLQN--------------KNKELESLKEELQQAKATLKEEEEIISQQ 523 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344666666666632 22357777777777666688887655443
No 160
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=32.96 E-value=3e+02 Score=23.84 Aligned_cols=111 Identities=23% Similarity=0.316 Sum_probs=69.8
Q ss_pred hHhHHHHHHHHHHH-------HHHHHhcCCchhHHHHhhhccCcc---------------hHHhhhhhhccchhHhhhhh
Q 021571 186 QLKDEVFRIEQDIM-------QTIAKAGVNKDCELRKLLDEVSPK---------------NFERINKLLVVKDEEIHKLK 243 (310)
Q Consensus 186 QLKDeVlRIE~dIm-------~Avakag~~~~~El~kil~evspk---------------n~e~inkll~~kD~eIakLr 243 (310)
+|+--+..++.+|+ +|+.+.+...+..+..++..++-+ ++++.-+...++++|+.-|+
T Consensus 33 ~l~~~l~~L~~EI~Y~~tpL~ea~~~i~~~~~~~~~~~f~~~a~~L~~~~g~s~~eaw~~~~~~~~~~~~L~~~d~eiL~ 112 (171)
T PRK08307 33 ELKAALQSLEAEIMYGHTPLPEALENIAKQSPKPISTLFQRFSERLESGEGETAYEAWEKALEENWKNTALKKEDIEILL 112 (171)
T ss_pred HHHHHHHHHHHHHhhcCCcHHHHHHHHHHccchhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhccCCCHHHHHHHH
Confidence 44444555666664 889898887777777776665432 23333344677777777776
Q ss_pred hhhHhhhhhcccchhHHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHhhHHHHHHHhhhhccCCCC
Q 021571 244 DEIKIMSAHWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRVMLYISYHSGMM 309 (310)
Q Consensus 244 deiri~SaHW~~ktKELEsQlekqRR~dQElKkrVlkLEfclqEaRsqtrKlQr~~~~~~~~~~~~ 309 (310)
+=-+.+-.+ ..|.|..--+-+ +-.|+..+++||....|=.||.-|.++-+|.+
T Consensus 113 ~lg~~LG~~------D~e~Q~k~i~L~-------~e~L~~~~~~a~~~~~k~~Kmy~~LGvl~Gl~ 165 (171)
T PRK08307 113 QFGKTLGQS------DREGQQKHIRLA-------LEHLEREEEEAEEEQKKNEKMYKYLGFLAGLL 165 (171)
T ss_pred HHHHHHCcC------cHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 644444322 344444332222 23467888999999999999988888777653
No 161
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=32.54 E-value=2.5e+02 Score=22.33 Aligned_cols=52 Identities=29% Similarity=0.541 Sum_probs=34.2
Q ss_pred HHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhh
Q 021571 38 QSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGR 99 (310)
Q Consensus 38 ~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~Q 99 (310)
..|-..|.+=..|+-..|+.+-.-|+.+.+ .| ..-|+||.+|...|+.++.|
T Consensus 28 ~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~k---------mK-~~YEeEI~rLr~eLe~r~~~ 79 (79)
T PF08581_consen 28 DEYEHKINSQIQEMQQIRQKVYELEQAHRK---------MK-QQYEEEIARLRRELEQRGRQ 79 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HH-HHHHHHHHHHHHHHCHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HH-HHHHHHHHHHHHHHHhhCCC
Confidence 344455666667777777776666554431 12 13599999999999998876
No 162
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=31.92 E-value=2.9e+02 Score=25.44 Aligned_cols=62 Identities=23% Similarity=0.415 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHH------HHHhhhchHHHHHHHH
Q 021571 29 LLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQE------AEMKAKNMEDEICKLQ 90 (310)
Q Consensus 29 LLkDL~EKK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~------AE~kak~ME~Ei~kLq 90 (310)
.-..+..++.++..++..|-..+...|..+..+.......-...+. ...++..|+.||..|+
T Consensus 230 ~~~~le~~~~~~ee~~~~L~ekme~e~~~~~~e~e~~l~~k~~eq~~~l~e~~~~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 230 QEQMLEQQERSYEEHIKQLKEKMEEEREQLLQEQERLLEQKLQEQEELLKEGFQEEAEKLQKEIQDLQ 297 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
No 163
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=31.55 E-value=5.1e+02 Score=25.47 Aligned_cols=142 Identities=23% Similarity=0.320 Sum_probs=85.0
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHh----------hhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhh
Q 021571 32 DLNEKKQSFRKNVVSLAAELKEVRT----------RLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQ 101 (310)
Q Consensus 32 DL~EKK~sfRRNVvsLaaELKd~R~----------rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~ 101 (310)
-+.++-..+-+++.++-.|.-++-. || .+|.++.==.-.+..+- .-.+=+|-.-|+.+|..-.+...
T Consensus 137 k~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RL-N~ELn~~L~g~~~rivD--IDaLi~ENRyL~erl~q~qeE~~ 213 (319)
T PF09789_consen 137 KLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRL-NHELNYILNGDENRIVD--IDALIMENRYLKERLKQLQEEKE 213 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCCCCCccc--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466778888999999888877642 33 23333321111111110 12233455566666665556666
Q ss_pred hhhhhHHHHHHHHhhHhhhHhHHHHh----------------------------hHhhHHhHHHHHHHHHHHHhhhhhhh
Q 021571 102 ASACTAEKYLMQLDGLRSQLAATKAT----------------------------ADASAASAQSAQLQCLALVKELDEKN 153 (310)
Q Consensus 102 as~~stekyl~eLD~lRSQLs~tqAT----------------------------AeaSaaSAqsaqlqCl~L~keL~eK~ 153 (310)
-.-++..||-.=||.=|+. ..++.. -.++++|+.--+.-|.+|+.-+||||
T Consensus 214 l~k~~i~KYK~~le~k~~~-~~~k~~~~~~~~~~~v~s~kQv~~ll~~~~~~~~~~~~~~s~sdLksl~~aLle~indK~ 292 (319)
T PF09789_consen 214 LLKQTINKYKSALERKRKK-GIIKLGNSASSNLTGVMSAKQVKELLESESNGCSLPASPQSISDLKSLATALLETINDKN 292 (319)
T ss_pred HHHHHHHHHHHHHHhhccc-cccccCCCCCCcccccccHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHHhhhHH
Confidence 6667777888777742221 111111 12455667777888999999999999
Q ss_pred cchhhhhhHhhh-hHHHHHhHHHHHh
Q 021571 154 SSLKEHEDRVTR-LGQQLDNLQKDLQ 178 (310)
Q Consensus 154 ~sLkEhE~rV~~-LgEQLD~LQKdLq 178 (310)
-.|. |--+.|+ ||-.+-.|.+-|+
T Consensus 293 ~al~-Hqr~tNkILg~rv~ELE~kl~ 317 (319)
T PF09789_consen 293 LALQ-HQRKTNKILGNRVAELEKKLK 317 (319)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 9985 6666665 5777777766654
No 164
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.50 E-value=1.9e+02 Score=31.14 Aligned_cols=78 Identities=21% Similarity=0.233 Sum_probs=56.7
Q ss_pred hHHHHHHHHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhcchhhhhhHhhhhHHHHHhHHHHHhhhhhhHH
Q 021571 106 TAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQK 185 (310)
Q Consensus 106 stekyl~eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~LgEQLD~LQKdLqaRE~SQk 185 (310)
-.|+|-+|..+|...+++-|+ +. .||-+||..--...+.|.--.-++|+.|..++.-..
T Consensus 332 eIe~~~ke~kdLkEkv~~lq~-~l--------------------~eke~sl~dlkehassLas~glk~ds~Lk~leIalE 390 (654)
T KOG4809|consen 332 EIESFRKENKDLKEKVNALQA-EL--------------------TEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALE 390 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HH--------------------HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 346688999999888887776 32 333444433333455555556678899999999999
Q ss_pred hHhHHHHHHHHHHHHHHHH
Q 021571 186 QLKDEVFRIEQDIMQTIAK 204 (310)
Q Consensus 186 QLKDeVlRIE~dIm~Avak 204 (310)
|=|+|....|.|.-.|-..
T Consensus 391 qkkEec~kme~qLkkAh~~ 409 (654)
T KOG4809|consen 391 QKKEECSKMEAQLKKAHNI 409 (654)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999999887633
No 165
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=31.48 E-value=2.4e+02 Score=21.70 Aligned_cols=64 Identities=25% Similarity=0.261 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhhHhHH
Q 021571 47 LAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAAT 124 (310)
Q Consensus 47 LaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~stekyl~eLD~lRSQLs~t 124 (310)
|.++....|+||.+ +..+....+.+...|...=..---||.--.....++-.|++.|+-+|.-+
T Consensus 3 Lea~~~~Lr~rLd~--------------~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 3 LEAEIATLRNRLDS--------------LTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555666643 33444455555555544211111233333333444556666666655443
No 166
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=31.31 E-value=1.9e+02 Score=24.80 Aligned_cols=67 Identities=24% Similarity=0.351 Sum_probs=30.2
Q ss_pred HHHHHHhhHhhhHhHHHHhhHhhHHhHHHH-HHHHHHHHhhhhhhhcchhhhhhHhhhhHHHHHhHHH
Q 021571 109 KYLMQLDGLRSQLAATKATADASAASAQSA-QLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQK 175 (310)
Q Consensus 109 kyl~eLD~lRSQLs~tqATAeaSaaSAqsa-qlqCl~L~keL~eK~~sLkEhE~rV~~LgEQLD~LQK 175 (310)
.++.++..++..+.+.+..++.....+... ---=-.+..++.+.+.-|...+.-+..|-+|.+++++
T Consensus 122 ~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 122 SLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666666666665555444333322221 0000012233333344444455555555555555554
No 167
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=30.87 E-value=42 Score=30.35 Aligned_cols=31 Identities=39% Similarity=0.513 Sum_probs=22.9
Q ss_pred hHhhhhhhhhHhh------hhhcccchhHHHHHHHHh
Q 021571 237 EEIHKLKDEIKIM------SAHWKLKTKELESQLEKQ 267 (310)
Q Consensus 237 ~eIakLrdeiri~------SaHW~~ktKELEsQlekq 267 (310)
+||++|.++|..| +..|++|.-.|+++|+.-
T Consensus 127 ~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F 163 (171)
T PF04799_consen 127 DEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERF 163 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666665544 678999999999999863
No 168
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=30.36 E-value=5.1e+02 Score=25.05 Aligned_cols=73 Identities=16% Similarity=0.279 Sum_probs=40.0
Q ss_pred hhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhhccchhHhhhhhh
Q 021571 165 RLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKD 244 (310)
Q Consensus 165 ~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dIm~Avakag~~~~~El~kil~evspkn~e~inkll~~kD~eIakLrd 244 (310)
++.-|+..+-..+-.+-+.-.+++.++.-++.-|-+.+...-.+-.++ ++..++-...=..+++.++.
T Consensus 296 ~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~~~~~e~~~~~~~~~~~------------~~~l~~~~~~L~~~~~~l~~ 363 (458)
T COG3206 296 QVRQQIADLSTELGAKHPQLVALEAQLAELRQQIAAELRQILASLPNE------------LALLEQQEAALEKELAQLKG 363 (458)
T ss_pred HHHHHHHHHHHhhcccChHHHhHHHHHHHHHHHHHHHHHHHHHhchhH------------HHHHHHHHHHHHHHHHHHHH
Confidence 334444455555666666667777777777666666665544333333 34444444444455666666
Q ss_pred hhHhh
Q 021571 245 EIKIM 249 (310)
Q Consensus 245 eiri~ 249 (310)
+...+
T Consensus 364 ~~~~~ 368 (458)
T COG3206 364 RLSKL 368 (458)
T ss_pred HHhhc
Confidence 55544
No 169
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=30.20 E-value=3.9e+02 Score=23.67 Aligned_cols=105 Identities=17% Similarity=0.209 Sum_probs=0.0
Q ss_pred CCCCCCccccChhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHh--
Q 021571 17 SSSSVPAREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLE-- 94 (310)
Q Consensus 17 ~sss~~~~elDPLLkDL~EKK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Le-- 94 (310)
.+|.||-.==.-...-+..+-..+...+..+-.++.+...+|..- ..=-.+|..|...-.+...++.++..|++.|+
T Consensus 51 Gssn~YWsFps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~-~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~ 129 (188)
T PF03962_consen 51 GSSNYYWSFPSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEA-KKGREESEEREELLEELEELKKELKELKKELEKY 129 (188)
T ss_pred cCeeEEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ---------hhhhhhhhhhhhHHHHHHHHhhHhhhHh
Q 021571 95 ---------ERNGRLQASACTAEKYLMQLDGLRSQLA 122 (310)
Q Consensus 95 ---------ek~~QL~as~~stekyl~eLD~lRSQLs 122 (310)
....++.-...+|++|-.-+.-|++-+.
T Consensus 130 ~~~Dp~~i~~~~~~~~~~~~~anrwTDNI~~l~~~~~ 166 (188)
T PF03962_consen 130 SENDPEKIEKLKEEIKIAKEAANRWTDNIFSLKSYLK 166 (188)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
No 170
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=29.80 E-value=8.8e+02 Score=27.61 Aligned_cols=86 Identities=9% Similarity=0.178 Sum_probs=46.5
Q ss_pred HHHHHhHHHHHHHHHHHHhhhhhhhhHHHH--HHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhhhH-------H
Q 021571 38 QSFRKNVVSLAAELKEVRTRLASQEQCFVK--ETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTA-------E 108 (310)
Q Consensus 38 ~sfRRNVvsLaaELKd~R~rLasQEq~~ak--Et~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~st-------e 108 (310)
..+++-+..-.+++++++.+|+...+.-.. ++.+...-|.+...-..++..+|+.+...|.+++.-..+. .
T Consensus 68 ~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s~~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~~l~~~pq~~~ 147 (1109)
T PRK10929 68 KQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMSTDALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQT 147 (1109)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhchhhHH
Confidence 345555555566666666666532111100 2222344556666666777788888887777774322222 2
Q ss_pred HHHHHHhhHhhhHhH
Q 021571 109 KYLMQLDGLRSQLAA 123 (310)
Q Consensus 109 kyl~eLD~lRSQLs~ 123 (310)
.-...+.+++.+|..
T Consensus 148 ~~~~~l~~i~~~L~~ 162 (1109)
T PRK10929 148 EARRQLNEIERRLQT 162 (1109)
T ss_pred HHHHHHHHHHHHHhC
Confidence 234566666766655
No 171
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=29.75 E-value=5.3e+02 Score=27.58 Aligned_cols=15 Identities=20% Similarity=0.488 Sum_probs=7.1
Q ss_pred ccChhhhhhHHHHHH
Q 021571 25 EIDPLLKDLNEKKQS 39 (310)
Q Consensus 25 elDPLLkDL~EKK~s 39 (310)
+++-|+.+|.+.+..
T Consensus 517 ~~~~li~~l~~~~~~ 531 (782)
T PRK00409 517 KLNELIASLEELERE 531 (782)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555544443
No 172
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=29.17 E-value=3.8e+02 Score=28.12 Aligned_cols=114 Identities=25% Similarity=0.249 Sum_probs=0.0
Q ss_pred hcchhhhhhHhhhhHH-HHHhHHHHHhhhhhhHHhHhHH--HHHHHHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhh
Q 021571 153 NSSLKEHEDRVTRLGQ-QLDNLQKDLQARESSQKQLKDE--VFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERIN 229 (310)
Q Consensus 153 ~~sLkEhE~rV~~LgE-QLD~LQKdLqaRE~SQkQLKDe--VlRIE~dIm~Avakag~~~~~El~kil~evspkn~e~in 229 (310)
++-.+--|..+.++.. ||.|...++..+----++|+-+ -+.-+.+|++--..--..+-..+.|=+.+.- .+|
T Consensus 331 eSqr~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~-----E~n 405 (493)
T KOG0804|consen 331 ESQRKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER-----EEN 405 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH
Q ss_pred hhhccchhHhhhhhhhhHhhhhhcccchhHHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHhhHHH
Q 021571 230 KLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKL 295 (310)
Q Consensus 230 kll~~kD~eIakLrdeiri~SaHW~~ktKELEsQlekqRR~dQElKkrVlkLEfclqEaRsqtrKl 295 (310)
+.|.-.-+ -|..|-|++|.++...+++ .++-+|+-..|+|-|
T Consensus 406 ~~l~knq~--------------vw~~kl~~~~e~~~~~~~s----------~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 406 KKLIKNQD--------------VWRGKLKELEEREKEALGS----------KDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHhhHH--------------HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhH
No 173
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=28.99 E-value=2.9e+02 Score=21.77 Aligned_cols=17 Identities=24% Similarity=0.456 Sum_probs=7.9
Q ss_pred hhhhcccchhHHHHHHH
Q 021571 249 MSAHWKLKTKELESQLE 265 (310)
Q Consensus 249 ~SaHW~~ktKELEsQle 265 (310)
+...+..+..+|+++++
T Consensus 171 l~~~l~~~~~~l~~~~~ 187 (202)
T PF01442_consen 171 LKETLDQRIEELESSID 187 (202)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444455555544
No 174
>PRK10884 SH3 domain-containing protein; Provisional
Probab=28.86 E-value=2.2e+02 Score=25.88 Aligned_cols=42 Identities=17% Similarity=0.425 Sum_probs=27.0
Q ss_pred hHhhhhhhhhHhhhhhcccchhHHHHHHHHhHhhHHHHHHhh
Q 021571 237 EEIHKLKDEIKIMSAHWKLKTKELESQLEKQRRADQELKKRV 278 (310)
Q Consensus 237 ~eIakLrdeiri~SaHW~~ktKELEsQlekqRR~dQElKkrV 278 (310)
.|++.|++++.=+..-|..++.++...++...-.-.+|+..-
T Consensus 100 ~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n 141 (206)
T PRK10884 100 NQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEEN 141 (206)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788888877888888888877765444333333333333
No 175
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=28.42 E-value=2.1e+02 Score=24.03 Aligned_cols=33 Identities=24% Similarity=0.460 Sum_probs=23.3
Q ss_pred cChhhhhhHHHHHHHHHhHHHHHHHHHHHHhhh
Q 021571 26 IDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRL 58 (310)
Q Consensus 26 lDPLLkDL~EKK~sfRRNVvsLaaELKd~R~rL 58 (310)
+=|+|+.+.+.=...++.+..+.++|.+.+...
T Consensus 11 lLP~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 43 (120)
T PF09969_consen 11 LLPLLRPILEEIRELKAELEELEERLQELEDSL 43 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 346777776666777778888888877766655
No 176
>PTZ00464 SNF-7-like protein; Provisional
Probab=27.39 E-value=4.8e+02 Score=23.83 Aligned_cols=104 Identities=17% Similarity=0.229 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhhhhhhhcchhhhhhHhhhhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHHHHHHHHhcCCchhHHHH
Q 021571 136 QSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRK 215 (310)
Q Consensus 136 qsaqlqCl~L~keL~eK~~sLkEhE~rV~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dIm~Avakag~~~~~El~k 215 (310)
...-++||--- |-+|-.+.++..|+++|..-.-+=+.+ .+..++++|...+ ...|.+
T Consensus 60 K~~Al~~LK~K----------K~~E~ql~~l~~q~~nleq~~~~ie~a---------~~~~~vv~amk~g----~kaLK~ 116 (211)
T PTZ00464 60 KQRAMQLLQQK----------RMYQNQQDMMMQQQFNMDQLQFTTESV---------KDTKVQVDAMKQA----AKTLKK 116 (211)
T ss_pred HHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH----HHHHHH
Confidence 44556776433 235677888899999988766655554 4446788888544 456777
Q ss_pred hhhccCcchHHhhhhhhccchhHhhhhhhhh-Hhhhhhcc----cchhHHHHHHHH
Q 021571 216 LLDEVSPKNFERINKLLVVKDEEIHKLKDEI-KIMSAHWK----LKTKELESQLEK 266 (310)
Q Consensus 216 il~evspkn~e~inkll~~kD~eIakLrdei-ri~SaHW~----~ktKELEsQlek 266 (310)
++..+ |+++|.+++.==.|.++.- +|| .+|+...- .--.|||..|+.
T Consensus 117 ~~k~i---~id~Vd~l~Dei~E~~e~~-~EI~e~Ls~~~~~~~~~DEdELe~ELe~ 168 (211)
T PTZ00464 117 QFKKL---NVDKVEDLQDELADLYEDT-QEIQEIMGRAYDVPDDIDEDEMLGELDA 168 (211)
T ss_pred HHhcC---CHHHHHHHHHHHHHHHHHH-HHHHHHHhCCCCCCCCCCHHHHHHHHHH
Confidence 88887 5777766653333333322 333 46665432 345677776663
No 177
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=27.33 E-value=5.8e+02 Score=24.70 Aligned_cols=71 Identities=13% Similarity=0.146 Sum_probs=39.0
Q ss_pred hchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhcchhhh
Q 021571 80 KNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEH 159 (310)
Q Consensus 80 k~ME~Ei~kLqK~Leek~~QL~as~~stekyl~eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~keL~eK~~sLkEh 159 (310)
-+|=-+|.-|...|+|..+++--.--..+.=..++.-++-..... +.++-.|-.+|.+++..+.+|
T Consensus 108 ~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L--------------~~e~~~Lre~L~~rdeli~kh 173 (302)
T PF09738_consen 108 SALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSL--------------REELDELREQLKQRDELIEKH 173 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHC
Confidence 456677888888888877765433333222233444333333222 233444555666667777777
Q ss_pred hhHhh
Q 021571 160 EDRVT 164 (310)
Q Consensus 160 E~rV~ 164 (310)
.+=++
T Consensus 174 GlVlv 178 (302)
T PF09738_consen 174 GLVLV 178 (302)
T ss_pred CeeeC
Confidence 66544
No 178
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=27.17 E-value=3.8e+02 Score=22.55 Aligned_cols=21 Identities=14% Similarity=0.154 Sum_probs=11.1
Q ss_pred HHHHHhhHhhhHhHHHHhhHh
Q 021571 110 YLMQLDGLRSQLAATKATADA 130 (310)
Q Consensus 110 yl~eLD~lRSQLs~tqATAea 130 (310)
.-.||..|++.++..+.....
T Consensus 98 l~~eL~~L~~~~t~~el~~~i 118 (169)
T PF07106_consen 98 LEAELASLSSEPTNEELREEI 118 (169)
T ss_pred HHHHHHHHhcCCCHHHHHHHH
Confidence 345666666666555444433
No 179
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=27.17 E-value=60 Score=21.16 Aligned_cols=21 Identities=43% Similarity=0.771 Sum_probs=13.9
Q ss_pred HhhhhhhhhHhhhhhcccchhHHHHHHHHhHh
Q 021571 238 EIHKLKDEIKIMSAHWKLKTKELESQLEKQRR 269 (310)
Q Consensus 238 eIakLrdeiri~SaHW~~ktKELEsQlekqRR 269 (310)
||.+||..| .+||+||..=||
T Consensus 2 E~~rlr~rI-----------~dLer~L~~C~~ 22 (23)
T PF04508_consen 2 EMNRLRNRI-----------SDLERQLSECRR 22 (23)
T ss_pred hHHHHHHHH-----------HHHHHHHHHHhc
Confidence 556666655 578888876543
No 180
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=26.85 E-value=97 Score=28.76 Aligned_cols=44 Identities=25% Similarity=0.416 Sum_probs=31.8
Q ss_pred hhhhhHhhhhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHHHH
Q 021571 157 KEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQ 200 (310)
Q Consensus 157 kEhE~rV~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dIm~ 200 (310)
.--|.+|.++.+|+|.+=-.+.+---.-.+++.+|-.+|.||-.
T Consensus 82 inlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~ 125 (189)
T TIGR02132 82 INLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKS 125 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHH
Confidence 34466777777777776666665444556899999999999853
No 181
>COG0064 GatB Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) [Translation, ribosomal structure and biogenesis]
Probab=26.56 E-value=2.7e+02 Score=28.93 Aligned_cols=106 Identities=26% Similarity=0.297 Sum_probs=77.2
Q ss_pred hhHhhHHhHHHHHHHHHHHHhhhhhhhcchhhhhhHhhhhHHHHHhHHHHHhhhhhhHHhHhHHHHHH---H-HHHHHHH
Q 021571 127 TADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRI---E-QDIMQTI 202 (310)
Q Consensus 127 TAeaSaaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRI---E-~dIm~Av 202 (310)
++..++...+.|..-|..|++.||+.+-++.+--.. -++|-.|=+.+..-..|.|+-|+-|.++ + .|+-+-|
T Consensus 337 ~~~~~~~~k~~anW~~~el~~~Ln~~~~~i~~~~~~----p~~la~Li~li~~g~IS~k~AK~~v~~~~~~~~~~p~~ii 412 (483)
T COG0064 337 AVKAGADAKLAANWLTNELLGLLNKAGITLEESPLT----PEQLAELIKLIDEGTISGKIAKELVFEILANGGKDPEEII 412 (483)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhcCCChhhcCCC----HHHHHHHHHHHHcCCccHHHHHHHHHHHHHccCCCHHHHH
Confidence 333444467888999999999999999998855443 4566666677778889999999965544 3 5677777
Q ss_pred HHhcC---CchhHHHHhhhccCcchHHhhhhhhccch
Q 021571 203 AKAGV---NKDCELRKLLDEVSPKNFERINKLLVVKD 236 (310)
Q Consensus 203 akag~---~~~~El~kil~evspkn~e~inkll~~kD 236 (310)
..-|- ..+.+|.++.++|=-.|-+.+-+...=|+
T Consensus 413 e~~gL~qisD~~~l~~~V~evia~Np~~ve~yk~GK~ 449 (483)
T COG0064 413 EEKGLVQISDEGELEKIVDEVLAENPKAVEDYKSGKE 449 (483)
T ss_pred HhcCccccCCHHHHHHHHHHHHHHCHHHHHHHhccHH
Confidence 77775 66678899988887777766655544443
No 182
>PF08990 Docking: Erythronolide synthase docking; InterPro: IPR015083 The N-terminal docking domain found in modular polyketide synthase assumes an alpha-helical structure, wherein two alpha-helices are connected by a short loop. Two such N-terminal domains dimerise to form amphipathic parallel alpha-helical coiled coils: dimerisation is essential for protein function []. ; GO: 0016740 transferase activity, 0048037 cofactor binding; PDB: 2HG4_E.
Probab=26.51 E-value=96 Score=20.59 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=17.3
Q ss_pred HHHhHHHHHHHHHHHHhhhh
Q 021571 40 FRKNVVSLAAELKEVRTRLA 59 (310)
Q Consensus 40 fRRNVvsLaaELKd~R~rLa 59 (310)
+|.-+-+..+||.++|.||.
T Consensus 7 Lr~YLkr~t~eL~~~r~RLr 26 (27)
T PF08990_consen 7 LRDYLKRVTAELRRARRRLR 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 56777888999999999985
No 183
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=26.32 E-value=7.6e+02 Score=25.74 Aligned_cols=36 Identities=19% Similarity=0.283 Sum_probs=30.3
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHH
Q 021571 31 KDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFV 66 (310)
Q Consensus 31 kDL~EKK~sfRRNVvsLaaELKd~R~rLasQEq~~a 66 (310)
..+..|...-.+-+.+|..+|..++.+|...|+-+.
T Consensus 256 ~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~ 291 (726)
T PRK09841 256 QNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLN 291 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888888999999999999999999887653
No 184
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=26.30 E-value=3.5e+02 Score=21.91 Aligned_cols=14 Identities=14% Similarity=0.463 Sum_probs=5.3
Q ss_pred CCCCCccccChhhh
Q 021571 18 SSSVPAREIDPLLK 31 (310)
Q Consensus 18 sss~~~~elDPLLk 31 (310)
++-+..-+.|-++.
T Consensus 16 ~~kIa~Vd~~~v~~ 29 (158)
T PF03938_consen 16 SPKIAVVDVDKVFQ 29 (158)
T ss_dssp --CEEEE-HHHHHH
T ss_pred cCcEEEeeHHHHHH
Confidence 34455545554443
No 185
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=26.11 E-value=5.3e+02 Score=28.02 Aligned_cols=92 Identities=29% Similarity=0.451 Sum_probs=0.0
Q ss_pred cchhhhhhHhhhhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhhc
Q 021571 154 SSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLV 233 (310)
Q Consensus 154 ~sLkEhE~rV~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dIm~Avakag~~~~~El~kil~evspkn~e~inkll~ 233 (310)
..++..+..|.+|+++-..|+..+. ++|+|+..+|
T Consensus 422 ~~i~~~~~~ve~l~~e~~~L~~~~e-------e~k~eie~L~-------------------------------------- 456 (652)
T COG2433 422 KRIKKLEETVERLEEENSELKRELE-------ELKREIEKLE-------------------------------------- 456 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH--------------------------------------
Q ss_pred cchhHhhhhhhhhHhhhhhcccchhH-HHHHHHHhHhhHHHHHHhhHHHHHHHHHHH--------------HhhHHH
Q 021571 234 VKDEEIHKLKDEIKIMSAHWKLKTKE-LESQLEKQRRADQELKKRVLKLEFCLQEAR--------------AQTRKL 295 (310)
Q Consensus 234 ~kD~eIakLrdeiri~SaHW~~ktKE-LEsQlekqRR~dQElKkrVlkLEfclqEaR--------------sqtrKl 295 (310)
.+.+.++.+++ .-||+.|-=+ ++...++-++.=+|=+++|=-||=-|-+.+ .+..+|
T Consensus 457 ---~~l~~~~r~~~--~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~~lE~sG~g~pvk~ve~~ 528 (652)
T COG2433 457 ---SELERFRREVR--DKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRKLELSGKGTPVKVVEKL 528 (652)
T ss_pred ---HHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcceehhhhh
No 186
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=26.06 E-value=2.6e+02 Score=20.35 Aligned_cols=74 Identities=22% Similarity=0.297 Sum_probs=40.1
Q ss_pred hhHHhHHHHHHHHHHHHhhhhhhhcchhhhhhHhhhhHHHHHhHHHHHhh----hhhhHHhHhHHHHHHHHHHHHHHH
Q 021571 130 ASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQA----RESSQKQLKDEVFRIEQDIMQTIA 203 (310)
Q Consensus 130 aSaaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~LgEQLD~LQKdLqa----RE~SQkQLKDeVlRIE~dIm~Ava 203 (310)
.|+......+-.+..|...+......+...+..|....+.|-....+++. ++==....+.+..+-|...||.++
T Consensus 42 ~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e~L~e~~~~~~~~~~~r~Eq~~lDE~a 119 (123)
T PF02050_consen 42 VSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKLEKLKERRREEYQQEEERREQKELDEIA 119 (123)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555555555544444332 122233555667777777777664
No 187
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=26.04 E-value=2.9e+02 Score=26.97 Aligned_cols=57 Identities=28% Similarity=0.324 Sum_probs=36.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhh
Q 021571 36 KKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGR 99 (310)
Q Consensus 36 KK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~Q 99 (310)
-|.-++.-...|-+|+.+++.||.+-|--.++ -|.+.+.++.|+.+|.+++.+-..-
T Consensus 150 EkeeL~~eleele~e~ee~~erlk~le~E~s~-------LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 150 EKEELLKELEELEAEYEEVQERLKRLEVENSR-------LEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhchhHHHHHHHHHHHhccc
Confidence 35566666677777777777777655433321 3445566778888888877665443
No 188
>PRK11638 lipopolysaccharide biosynthesis protein WzzE; Provisional
Probab=26.03 E-value=1.2e+02 Score=29.31 Aligned_cols=49 Identities=29% Similarity=0.455 Sum_probs=40.9
Q ss_pred hhhhhhhHhhhhhcccchhHHHHHHHHhH-hhHHHHHHhhHHHHHHHHHHHHh
Q 021571 240 HKLKDEIKIMSAHWKLKTKELESQLEKQR-RADQELKKRVLKLEFCLQEARAQ 291 (310)
Q Consensus 240 akLrdeiri~SaHW~~ktKELEsQlekqR-R~dQElKkrVlkLEfclqEaRsq 291 (310)
..+.++|. .-|..|+..+..|+.-++ ++.-+..-|+-+|+..|+=|.++
T Consensus 182 ~~l~~~i~---~~~~~~~~~l~~~~~~~~~~ak~~~~~~i~rl~~AL~IA~aa 231 (342)
T PRK11638 182 SHLNDELK---GAWAARTIQMKAQVKRQEAVAKAIYDREVNSVEQALKIAEQQ 231 (342)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44555543 679999999999999999 77788889999999999998864
No 189
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=25.85 E-value=3e+02 Score=25.96 Aligned_cols=38 Identities=18% Similarity=0.243 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 021571 32 DLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKET 69 (310)
Q Consensus 32 DL~EKK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt 69 (310)
..-||-..+|.....|.+++...+++++.|+..+....
T Consensus 177 ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n 214 (259)
T PF08657_consen 177 GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMN 214 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55688889999999999999999999999998887653
No 190
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=25.84 E-value=2.3e+02 Score=24.35 Aligned_cols=57 Identities=28% Similarity=0.490 Sum_probs=32.8
Q ss_pred HHHHHhhhhhhhcchhhhhhHhhhhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHHHHH
Q 021571 142 CLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQT 201 (310)
Q Consensus 142 Cl~L~keL~eK~~sLkEhE~rV~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dIm~A 201 (310)
|.++.++|+.=-.+|..--. .|...||+|..-+..=.--+++.+|||.-+=.|+-+.
T Consensus 45 ~~~v~kql~~vs~~l~~tKk---hLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i 101 (126)
T PF07889_consen 45 VASVSKQLEQVSESLSSTKK---HLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQI 101 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 55566665554444432222 1345566666665555555678888887777776543
No 191
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=25.76 E-value=7.4e+02 Score=25.45 Aligned_cols=70 Identities=19% Similarity=0.371 Sum_probs=39.9
Q ss_pred cccChhhhhhHHHHHHHHHh--------------HHHHHHHHHHHHhhhhhhhhHHHHHHhhH-HHHHHhhhchHHHHHH
Q 021571 24 REIDPLLKDLNEKKQSFRKN--------------VVSLAAELKEVRTRLASQEQCFVKETLTR-QEAEMKAKNMEDEICK 88 (310)
Q Consensus 24 ~elDPLLkDL~EKK~sfRRN--------------VvsLaaELKd~R~rLasQEq~~akEt~tR-k~AE~kak~ME~Ei~k 88 (310)
..+||.+.+|..+-....+. |+.+-+++.+++..++..-+.+..-..+. ..|..+...++..+.+
T Consensus 284 ~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~ 363 (754)
T TIGR01005 284 LKLEDLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQ 363 (754)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999998877776654 45555555555555544333332222111 3344555566666666
Q ss_pred HHHHH
Q 021571 89 LQKTL 93 (310)
Q Consensus 89 LqK~L 93 (310)
++..+
T Consensus 364 ~~~~~ 368 (754)
T TIGR01005 364 LKAAS 368 (754)
T ss_pred HHHHH
Confidence 65555
No 192
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=25.70 E-value=4.4e+02 Score=22.81 Aligned_cols=111 Identities=21% Similarity=0.264 Sum_probs=67.3
Q ss_pred hHhHHHHHHHHHHH-------HHHHHhcCCchhHHHHhhhccCc-------chHHh-----hh---hhhccchhHhhhhh
Q 021571 186 QLKDEVFRIEQDIM-------QTIAKAGVNKDCELRKLLDEVSP-------KNFER-----IN---KLLVVKDEEIHKLK 243 (310)
Q Consensus 186 QLKDeVlRIE~dIm-------~Avakag~~~~~El~kil~evsp-------kn~e~-----in---kll~~kD~eIakLr 243 (310)
+|+--+..++.+|+ +|+.+.+...+..+..++..++- .+|.. ++ +.+.++++|+.-|+
T Consensus 32 ~l~~~l~~L~~EI~Y~~tpL~ea~~~i~~~~~~~~~~~f~~~a~~L~~~~g~s~~~~w~~~~~~~~~~~~L~~~d~eiL~ 111 (170)
T TIGR02833 32 QLINALQSLEAEIVYGHTPLPEAFKKIALKSPKPVNLLFESASERLKEGEGLTVYEAWKKALNEVWKQTALQKSEKEILL 111 (170)
T ss_pred HHHHHHHHHHHHHhhcCCcHHHHHHHHHhhcchhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhccCCCHHHHHHHH
Confidence 44444555666654 88888888777777777665432 23322 22 33466666666666
Q ss_pred hhhHhhhhhcccchhHHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHhhHHHHHHHhhhhccCCCC
Q 021571 244 DEIKIMSAHWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRVMLYISYHSGMM 309 (310)
Q Consensus 244 deiri~SaHW~~ktKELEsQlekqRR~dQElKkrVlkLEfclqEaRsqtrKlQr~~~~~~~~~~~~ 309 (310)
+=-+.+-.+ ..|.|..--+-+ +-.||..+++||....|=.||.-|.++-+|+|
T Consensus 112 ~lG~~LG~~------D~e~Q~k~i~L~-------~~~L~~~~~~a~~~~~k~~Kmy~~LGvl~Gl~ 164 (170)
T TIGR02833 112 QFGKTLGES------DREGQQKHINLT-------LEHLERQLTEAEDEQKKNEKMYRYLGVLVGLM 164 (170)
T ss_pred HHHHHHCcC------cHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 544433322 334443322222 33467889999999999999988888777753
No 193
>PF15483 DUF4641: Domain of unknown function (DUF4641)
Probab=25.49 E-value=54 Score=33.63 Aligned_cols=21 Identities=38% Similarity=0.510 Sum_probs=18.0
Q ss_pred HHHHHhhHhhhHhHHHHhhHh
Q 021571 110 YLMQLDGLRSQLAATKATADA 130 (310)
Q Consensus 110 yl~eLD~lRSQLs~tqATAea 130 (310)
+-+|+||||.||++.|+-+|-
T Consensus 423 LQkEIedLreQLaamqsl~~k 443 (445)
T PF15483_consen 423 LQKEIEDLREQLAAMQSLADK 443 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 348999999999999998763
No 194
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=24.87 E-value=9.2e+02 Score=27.09 Aligned_cols=76 Identities=26% Similarity=0.333 Sum_probs=43.8
Q ss_pred HhHhHHHHHHHHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhhcc----chhHhhhhhhhhHhh-----------
Q 021571 185 KQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVV----KDEEIHKLKDEIKIM----------- 249 (310)
Q Consensus 185 kQLKDeVlRIE~dIm~Avakag~~~~~El~kil~evspkn~e~inkll~~----kD~eIakLrdeiri~----------- 249 (310)
+|+-+|.-||--|+-+|+++...-+ ..-.-.|+=|++|.+ +|.||.||++=.|-+
T Consensus 490 q~~d~e~~rik~ev~eal~~~k~~q----------~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~lL~dl 559 (861)
T PF15254_consen 490 QQFDIETTRIKIEVEEALVNVKSLQ----------FKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMAKLLSDL 559 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh----------hhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3455556666666666666553211 112234666777655 799999999866532
Q ss_pred ---hhhcc---cchhHHHHHHHHhHhh
Q 021571 250 ---SAHWK---LKTKELESQLEKQRRA 270 (310)
Q Consensus 250 ---SaHW~---~ktKELEsQlekqRR~ 270 (310)
++-|| +=||-|=.-.|||=+-
T Consensus 560 s~D~ar~Kp~~nLTKSLLniyEkqlQ~ 586 (861)
T PF15254_consen 560 SVDSARCKPGNNLTKSLLNIYEKQLQH 586 (861)
T ss_pred cccccccCCcchhHHHHHHHHHHhhcC
Confidence 35565 3466665555555443
No 195
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=24.79 E-value=1e+03 Score=26.77 Aligned_cols=48 Identities=33% Similarity=0.482 Sum_probs=28.7
Q ss_pred HHHHHHHHhhhhhhhcchhhhhhHhhhhHHHHHhHHHH-------HhhhhhhHHhHhH
Q 021571 139 QLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKD-------LQARESSQKQLKD 189 (310)
Q Consensus 139 qlqCl~L~keL~eK~~sLkEhE~rV~~LgEQLD~LQKd-------LqaRE~SQkQLKD 189 (310)
|||-+..+|.|..|. ||.|-=+.++|+++-.|+-. |.+++-..|++.+
T Consensus 469 ql~qs~iIkKLRAk~---ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E 523 (961)
T KOG4673|consen 469 QLAQSAIIKKLRAKI---KEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQE 523 (961)
T ss_pred HHHHHHHHHHHHHHh---hhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 677778889988875 45555555556555555544 4444444444443
No 196
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=24.54 E-value=5e+02 Score=25.99 Aligned_cols=65 Identities=14% Similarity=0.196 Sum_probs=38.7
Q ss_pred chhhhhhHhhhhHHHHHhHHHHH-hhhhhhHHhHhHHHHHHHHHHHHHHHHhcCCchhHHHHhhhcc
Q 021571 155 SLKEHEDRVTRLGQQLDNLQKDL-QARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEV 220 (310)
Q Consensus 155 sLkEhE~rV~~LgEQLD~LQKdL-qaRE~SQkQLKDeVlRIE~dIm~Avakag~~~~~El~kil~ev 220 (310)
...+.+.|++.+.++.+...+.- ..++ -.+.++.+++..|++-.....+.|.=.|.-++.++.+.
T Consensus 451 l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~er~~l~~~~~~~~i~~~~~~~~~~~l 516 (525)
T TIGR00831 451 LLPELDARIEELRADGEEKIRSGMGEKN-LRRRARLYVLDAKRSAVVDLRAGGLISQEVLLELMREL 516 (525)
T ss_pred HHHHHHHHHHHHHhhcccchhhhhhhhh-HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHh
Confidence 34455556655555543322111 1111 13468899999999999888888766666666665554
No 197
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=23.95 E-value=4.5e+02 Score=22.28 Aligned_cols=76 Identities=20% Similarity=0.236 Sum_probs=44.4
Q ss_pred HHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhh
Q 021571 41 RKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQ 120 (310)
Q Consensus 41 RRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~stekyl~eLD~lRSQ 120 (310)
|-....+=..+..+..+|...|++ .--.-..---.+.-|...|.+.+++||..|.---..+-.-++-|.-.|..
T Consensus 12 Rl~~~~lk~~l~k~~~ql~~ke~l------ge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keK 85 (177)
T PF13870_consen 12 RLKNITLKHQLAKLEEQLRQKEEL------GEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEK 85 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh------cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444432 22222223345667889999999999988776666666666666666665
Q ss_pred Hh
Q 021571 121 LA 122 (310)
Q Consensus 121 Ls 122 (310)
|.
T Consensus 86 l~ 87 (177)
T PF13870_consen 86 LH 87 (177)
T ss_pred HH
Confidence 54
No 198
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=23.94 E-value=5e+02 Score=22.83 Aligned_cols=93 Identities=24% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhh-------HhHHHHhhHhhHHhHHHHHHHHHH
Q 021571 72 RQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQ-------LAATKATADASAASAQSAQLQCLA 144 (310)
Q Consensus 72 Rk~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~stekyl~eLD~lRSQ-------Ls~tqATAeaSaaSAqsaqlqCl~ 144 (310)
|...|...+....|+.++.+.|..|..+|.--....++.-.+|+..+.+ |....+..+..-.-....--....
T Consensus 66 r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~~~~~~~~Le~iAg 145 (201)
T PF12072_consen 66 RQELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELEELIEEQQQELEEIAG 145 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q ss_pred HHhhhhhhhcchhhhhhHhhh
Q 021571 145 LVKELDEKNSSLKEHEDRVTR 165 (310)
Q Consensus 145 L~keL~eK~~sLkEhE~rV~~ 165 (310)
|..+ ..|.-.|..=|..+..
T Consensus 146 lT~e-EAk~~Ll~~le~e~~~ 165 (201)
T PF12072_consen 146 LTAE-EAKEILLEKLEEEARR 165 (201)
T ss_pred CCHH-HHHHHHHHHHHHHHHH
No 199
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=23.91 E-value=85 Score=22.90 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhc--CCchhHHHHhhhccCcchHHhhhhhh
Q 021571 194 IEQDIMQTIAKAG--VNKDCELRKLLDEVSPKNFERINKLL 232 (310)
Q Consensus 194 IE~dIm~Avakag--~~~~~El~kil~evspkn~e~inkll 232 (310)
||-+|-|+++++| .-.-.||-.-+...+|-+...+.+++
T Consensus 7 veLgI~dii~~~g~~~ls~~eia~~l~~~~p~~~~~L~Rim 47 (51)
T PF08100_consen 7 VELGIPDIIHNAGGGPLSLSEIAARLPTSNPSAPPMLDRIM 47 (51)
T ss_dssp HHTTHHHHHHHHTTS-BEHHHHHHTSTCT-TTHHHHHHHHH
T ss_pred HHcCcHHHHHHcCCCCCCHHHHHHHcCCCCcchHHHHHHHH
Confidence 6889999999998 33455666666656666666555554
No 200
>PF05300 DUF737: Protein of unknown function (DUF737); InterPro: IPR007964 This family consists of several uncharacterised mammalian proteins of unknown function.
Probab=23.87 E-value=5.6e+02 Score=23.35 Aligned_cols=65 Identities=26% Similarity=0.324 Sum_probs=34.2
Q ss_pred HHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHH--HHHHHHHHhhhhhhhhh
Q 021571 38 QSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDE--ICKLQKTLEERNGRLQA 102 (310)
Q Consensus 38 ~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~E--i~kLqK~Leek~~QL~a 102 (310)
.-|.++..+==+=+.+==.|++.-|.--+.|..++-.---++.+=++- ...|.+.|++|+..|..
T Consensus 82 e~~~kr~e~eQa~VQeEL~r~a~rEReAa~e~l~~ai~rer~~~~~E~~ka~~la~qLe~ke~el~~ 148 (187)
T PF05300_consen 82 EELLKRFEQEQAQVQEELARLAQREREAAAEHLTRAILRERASTEQERQKAKQLARQLEEKEAELKK 148 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcchhHHHHHHHHHHHHHhhHHHHHH
Confidence 333444333223333333566666666666666655544444433322 23467788888777654
No 201
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=23.84 E-value=6.7e+02 Score=24.25 Aligned_cols=99 Identities=21% Similarity=0.294 Sum_probs=65.4
Q ss_pred ccccChhhhhhHHHHHHHHH--------------hHHHHHHHHHHHHhhhhhhhhHHHHHHhhH-HHHHHhhhchHHHHH
Q 021571 23 AREIDPLLKDLNEKKQSFRK--------------NVVSLAAELKEVRTRLASQEQCFVKETLTR-QEAEMKAKNMEDEIC 87 (310)
Q Consensus 23 ~~elDPLLkDL~EKK~sfRR--------------NVvsLaaELKd~R~rLasQEq~~akEt~tR-k~AE~kak~ME~Ei~ 87 (310)
..--+|.+.||.++...++. +++.+.+++.+++..++.--+-+..-..+. +.++.+-..++.++.
T Consensus 280 ~~~~s~~i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~ 359 (458)
T COG3206 280 EVLESPTIQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELA 359 (458)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHH
Confidence 34456888999888888763 455566666666666655555555544553 667888888888888
Q ss_pred HHHHHHhhh----------hhhhhhhhhhHHHHHHHHhhHhhhH
Q 021571 88 KLQKTLEER----------NGRLQASACTAEKYLMQLDGLRSQL 121 (310)
Q Consensus 88 kLqK~Leek----------~~QL~as~~stekyl~eLD~lRSQL 121 (310)
.+.+.+..- .-++++.-..-+.||.-...+..|-
T Consensus 360 ~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ye~lL~r~qe~~~~~ 403 (458)
T COG3206 360 QLKGRLSKLPKLQVQLRELEREAEAARSLYETLLQRYQELSIQE 403 (458)
T ss_pred HHHHHHhhchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 887766543 3345555566667777776666665
No 202
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=23.82 E-value=4.6e+02 Score=22.39 Aligned_cols=110 Identities=17% Similarity=0.230 Sum_probs=67.8
Q ss_pred HhHHHHHHHHHHHHHHHHhcCCchhHHHHhhhccC----cc---hHHh-----hh---hhhccchhHhhhhhhhhHhhhh
Q 021571 187 LKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVS----PK---NFER-----IN---KLLVVKDEEIHKLKDEIKIMSA 251 (310)
Q Consensus 187 LKDeVlRIE~dIm~Avakag~~~~~El~kil~evs----pk---n~e~-----in---kll~~kD~eIakLrdeiri~Sa 251 (310)
|+-|+.=-=..+-+|+.+.+...+..+..++.+++ ++ +|.. ++ +-+.++++++.-|.+=.+.+-.
T Consensus 40 L~~EI~y~~tpL~eal~~i~~~~~~~~~~~f~~~a~~L~~~~~~~~~~~w~~~~~~~~~~~~L~~~d~e~L~~lg~~LG~ 119 (170)
T PF09548_consen 40 LETEIRYGATPLPEALERISRRSEGPIGEFFERVAERLEKNEGESFAEAWEEAVEKLLKESALKKEDKEILLELGKSLGY 119 (170)
T ss_pred HHHHHHHcCCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcc
Confidence 33333333334458888888877778877776654 22 2321 22 3455667777666665555432
Q ss_pred hcccchhHHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHhhHHHHHHHhhhhccCCCC
Q 021571 252 HWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRVMLYISYHSGMM 309 (310)
Q Consensus 252 HW~~ktKELEsQlekqRR~dQElKkrVlkLEfclqEaRsqtrKlQr~~~~~~~~~~~~ 309 (310)
-..|.|...-+-+-.+ |+.=+++||...+|-.||--|.+.-+|+|
T Consensus 120 ------~D~~~Q~k~i~l~~~~-------L~~~~~~a~~~~~~~~Klyr~LGvl~G~~ 164 (170)
T PF09548_consen 120 ------SDREMQEKHIELYLEQ-------LEQQLEEAREEAKKKGKLYRSLGVLGGLF 164 (170)
T ss_pred ------CCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 2455665544444443 45667899999999999988888777754
No 203
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=23.51 E-value=3.5e+02 Score=22.59 Aligned_cols=50 Identities=20% Similarity=0.284 Sum_probs=17.6
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhch
Q 021571 31 KDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNM 82 (310)
Q Consensus 31 kDL~EKK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~M 82 (310)
.||.....-=...+..+..-|+++..+|..= +...-+|.+ +..+-|.|.+
T Consensus 33 ~dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~L-~~~~~~~~~-rl~~~r~r~~ 82 (141)
T PF13874_consen 33 EDLKKRVEAQEEEIAQHRERLKEINDKLEEL-QKHDLETSA-RLEEARRRHQ 82 (141)
T ss_dssp -------------HHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHH-HHHHHHHHHH
Confidence 4555555555555555555566666665544 333333333 3334444433
No 204
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=23.28 E-value=1.2e+03 Score=27.03 Aligned_cols=191 Identities=20% Similarity=0.380 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHH--HHhhhhhhhhhhhhhHHHHHHHHhhHhhhHh
Q 021571 45 VSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQK--TLEERNGRLQASACTAEKYLMQLDGLRSQLA 122 (310)
Q Consensus 45 vsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK--~Leek~~QL~as~~stekyl~eLD~lRSQLs 122 (310)
+-+..|.-+.....+.-|-..+..-..++-.....+.-.+++-.-.+ .|.++..+++ .++||.+|
T Consensus 156 iElK~EYeelK~E~~kAE~~t~~~~~kkk~I~aEkk~aK~~k~eaeky~~lkde~~~~q-----~e~~L~qL-------- 222 (1141)
T KOG0018|consen 156 IELKPEYEELKYEMAKAEETTTGNYKKKKSIAAEKKEAKEGKEEAEKYQRLKDEKGKAQ-----KEQFLWEL-------- 222 (1141)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-----HHHHHHHH--------
Q ss_pred HHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhcchhhhhhHhhhhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHHHHHH
Q 021571 123 ATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTI 202 (310)
Q Consensus 123 ~tqATAeaSaaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dIm~Av 202 (310)
++|-.=+..+++.-++++.- +..+-+-+|+-.+.++.|.--..-..+++..++..|-+--
T Consensus 223 -----------------fhvE~~i~k~~~els~~~~e---i~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke 282 (1141)
T KOG0018|consen 223 -----------------FHVEACIEKANDELSRLNAE---IPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKE 282 (1141)
T ss_pred -----------------hhhhhhHhhhhHHHHHHhhh---hHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhcCCchhHHHHhhhccCc---------chHHhhhhhhccchhHhhhhhhhhHhhhhhcccchhHHHHHHHHhHh-hHH
Q 021571 203 AKAGVNKDCELRKLLDEVSP---------KNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQLEKQRR-ADQ 272 (310)
Q Consensus 203 akag~~~~~El~kil~evsp---------kn~e~inkll~~kD~eIakLrdeiri~SaHW~~ktKELEsQlekqRR-~dQ 272 (310)
.+.+. -.++.++=.+++- ++++..-+.....-.+|.+++++|..+++ +-+++|...++-++ .++
T Consensus 283 ~~l~e--rp~li~~ke~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~----~~~~fekei~~~~q~rg~ 356 (1141)
T KOG0018|consen 283 EKLAE--RPELIKVKENASHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEG----AKEEFEKEIEERSQERGS 356 (1141)
T ss_pred HHHhh--hhHHhhcchhhccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhccc
Q ss_pred HH
Q 021571 273 EL 274 (310)
Q Consensus 273 El 274 (310)
++
T Consensus 357 ~l 358 (1141)
T KOG0018|consen 357 EL 358 (1141)
T ss_pred cC
No 205
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=23.28 E-value=5.7e+02 Score=23.25 Aligned_cols=13 Identities=15% Similarity=0.041 Sum_probs=5.8
Q ss_pred hhHHHHHhHHHHH
Q 021571 165 RLGQQLDNLQKDL 177 (310)
Q Consensus 165 ~LgEQLD~LQKdL 177 (310)
-+...+.-|+.-.
T Consensus 243 G~l~R~~Al~~L~ 255 (301)
T PF14362_consen 243 GFLARLEALWELT 255 (301)
T ss_pred CHHHHHHHHHHHH
Confidence 3444444444433
No 206
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=23.21 E-value=3.5e+02 Score=22.31 Aligned_cols=34 Identities=35% Similarity=0.481 Sum_probs=24.8
Q ss_pred HHHHHhhHHHHHHhhhchHHHHHHHHHHH-hhhhh
Q 021571 65 FVKETLTRQEAEMKAKNMEDEICKLQKTL-EERNG 98 (310)
Q Consensus 65 ~akEt~tRk~AE~kak~ME~Ei~kLqK~L-eek~~ 98 (310)
+..|..-|..||.....|+.||..|-..| ++-|.
T Consensus 3 l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~ 37 (100)
T PF06428_consen 3 LEEERERREEAEQEKEQIESELEELTASLFEEANK 37 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677888888888888888887777 44443
No 207
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=23.21 E-value=2e+02 Score=26.98 Aligned_cols=65 Identities=22% Similarity=0.435 Sum_probs=44.3
Q ss_pred HHHHhHHHHHhhhhhhHHhHhHHHHHHHHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhhccchhHhhhhhhhhH
Q 021571 168 QQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIK 247 (310)
Q Consensus 168 EQLD~LQKdLqaRE~SQkQLKDeVlRIE~dIm~Avakag~~~~~El~kil~evspkn~e~inkll~~kD~eIakLrdeir 247 (310)
+-++.+...|+.++ +.|||+++|=++|..--..| +..+ --.+||.-++.|.--++.+.+|+..|.
T Consensus 3 e~i~si~~~L~e~d----~~REE~l~lsRei~r~s~~a-------I~~~----H~~~~eeA~~~l~~a~~~v~~Lk~~l~ 67 (204)
T COG2178 3 EEINSIREVLQEKD----KAREEALKLSREIVRLSGEA-------IFLL----HRGDFEEAEKKLKKASEAVEKLKRLLA 67 (204)
T ss_pred hHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-------HHHH----HhccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44666777777766 67999999999998643333 1111 123478888888777788888886654
No 208
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=23.17 E-value=2e+02 Score=23.40 Aligned_cols=53 Identities=19% Similarity=0.184 Sum_probs=40.2
Q ss_pred HhhhhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHH--HHHHHHHHh--cCCchhHHH
Q 021571 162 RVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQ--DIMQTIAKA--GVNKDCELR 214 (310)
Q Consensus 162 rV~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~--dIm~Avaka--g~~~~~El~ 214 (310)
+...+..|+..+++.++.-+--..+|+.||-+... |..+.+|.. |.-+++|+.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~Lg~vk~gEiv 84 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARNELGMVKPGETF 84 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHcCCCCCCCEE
Confidence 55667778888888887777778899999998866 688877764 566666654
No 209
>KOG3976 consensus Mitochondrial F1F0-ATP synthase, subunit b/ATP4 [Energy production and conversion]
Probab=23.06 E-value=2.1e+02 Score=27.49 Aligned_cols=29 Identities=21% Similarity=0.295 Sum_probs=20.2
Q ss_pred HHHHhHHHHHHHHHHHHhhhhhhhhHHHH
Q 021571 39 SFRKNVVSLAAELKEVRTRLASQEQCFVK 67 (310)
Q Consensus 39 sfRRNVvsLaaELKd~R~rLasQEq~~ak 67 (310)
.+|.|++.+|.|.|.+=.-+.+.|-+..+
T Consensus 180 ~yre~~~~v~~E~K~~lDy~v~~e~~~rr 208 (247)
T KOG3976|consen 180 TYREQLVRVAKEVKRRLDYWVETEASKRR 208 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999988665555555544443
No 210
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=22.74 E-value=3.3e+02 Score=20.29 Aligned_cols=62 Identities=19% Similarity=0.350 Sum_probs=36.5
Q ss_pred HHHHHHhhhhhhhcch-----hhhhhHhhhhHHHHHhHHHHHhh----hhhhHHhHhH----HHHHHHHHHHHHH
Q 021571 141 QCLALVKELDEKNSSL-----KEHEDRVTRLGQQLDNLQKDLQA----RESSQKQLKD----EVFRIEQDIMQTI 202 (310)
Q Consensus 141 qCl~L~keL~eK~~sL-----kEhE~rV~~LgEQLD~LQKdLqa----RE~SQkQLKD----eVlRIE~dIm~Av 202 (310)
.|..|..-|+++...| ++++.+...|.+|++.+...+.. -++.+.-|.. |++...++|++-+
T Consensus 47 ~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l~~~~~~~e~~l~~~~~~e~L~~~~~i~~rl 121 (127)
T smart00502 47 AFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEKLSHAINFTEEALNSGDPTELLLSKKLIIERL 121 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3455555555544333 35677778888888888777643 3444444443 4666666665544
No 211
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=22.63 E-value=1.1e+03 Score=26.21 Aligned_cols=93 Identities=24% Similarity=0.387 Sum_probs=56.6
Q ss_pred HHhHhHHHHHHHH----HHHHHHHHhcCCchhHHHHhhhcc----CcchHHhhhhhhccchhHhhhhhhhhH------hh
Q 021571 184 QKQLKDEVFRIEQ----DIMQTIAKAGVNKDCELRKLLDEV----SPKNFERINKLLVVKDEEIHKLKDEIK------IM 249 (310)
Q Consensus 184 QkQLKDeVlRIE~----dIm~Avakag~~~~~El~kil~ev----spkn~e~inkll~~kD~eIakLrdeir------i~ 249 (310)
-..||+.|.++=. .|-.+|.-.|-+-. ++.|.--.. +|.++ -..|..|..||+ |=
T Consensus 599 ~~~lkeki~~~~~Ei~~eie~v~~S~gL~~~-~~~k~e~a~~~~~p~~~~----------k~KIe~L~~eIkkkIe~av~ 667 (762)
T PLN03229 599 DDDLKEKVEKMKKEIELELAGVLKSMGLEVI-GVTKKNKDTAEQTPPPNL----------QEKIESLNEEINKKIERVIR 667 (762)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhccCchhh-hhhhhhhcccccCCChhh----------HHHHHHHHHHHHHHHHHHhc
Confidence 3567777776555 44455544453333 555552211 33332 134555555553 44
Q ss_pred hhhcccchhHHHHHHHHhHhh-HHHHHHhhHHHHHHHHH
Q 021571 250 SAHWKLKTKELESQLEKQRRA-DQELKKRVLKLEFCLQE 287 (310)
Q Consensus 250 SaHW~~ktKELEsQlekqRR~-dQElKkrVlkLEfclqE 287 (310)
|..-+.|-.+|...+.|-=.+ |.+-|.+|-.||--++.
T Consensus 668 ss~LK~k~E~Lk~Evaka~~~pd~~~k~kieal~~qik~ 706 (762)
T PLN03229 668 SSDLKSKIELLKLEVAKASKTPDVTEKEKIEALEQQIKQ 706 (762)
T ss_pred chhHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHH
Confidence 777888888999888887665 88888888888855543
No 212
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=22.25 E-value=6.4e+02 Score=23.71 Aligned_cols=140 Identities=21% Similarity=0.325 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhHHH--------HHHHHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhcc
Q 021571 84 DEICKLQKTLEERNGRLQASACTAEK--------YLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSS 155 (310)
Q Consensus 84 ~Ei~kLqK~Leek~~QL~as~~stek--------yl~eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~keL~eK~~s 155 (310)
+-|.+||.-|- ||++.----|+ |=.||+-||.|=.......-.+.. ...+.=...
T Consensus 3 ekv~~LQ~AL~----~LQaa~ekRE~lE~rLR~~lE~EL~~lr~qq~~~~~~~~~~~~-------------~~~~~L~~~ 65 (205)
T PF12240_consen 3 EKVERLQQALA----QLQAACEKREQLERRLRTRLERELESLRAQQRQGNSSGSSSPS-------------NNASNLKEL 65 (205)
T ss_pred hHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCC-------------CcHHHHHHH
Q ss_pred hhhhhhHhhhhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhhccc
Q 021571 156 LKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVK 235 (310)
Q Consensus 156 LkEhE~rV~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dIm~Avakag~~~~~El~kil~evspkn~e~inkll~~k 235 (310)
|+|-|.|+-.|.--.--.+.-- --|+.-+|+. |+|.+.+..-.|--+.+.-..-||+|.=+.|-.+.+-
T Consensus 66 LrEkEErILaLEad~~kWEqkY-LEEs~mrq~a----------~dAaa~aa~~rdttiI~~s~~~s~~~s~r~~eel~~a 134 (205)
T PF12240_consen 66 LREKEERILALEADMTKWEQKY-LEESAMRQFA----------MDAAATAAAQRDTTIINHSPSESYNSSLREEEELHMA 134 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH----------HHHHhhhHHHHHHHHHhcCCCCCCCccccchHHHHHh
Q ss_pred hhHhhhhhhhhHhhhh
Q 021571 236 DEEIHKLKDEIKIMSA 251 (310)
Q Consensus 236 D~eIakLrdeiri~Sa 251 (310)
..-+.-+.-.|+.+.+
T Consensus 135 ~~K~qemE~RIK~Lha 150 (205)
T PF12240_consen 135 NRKCQEMENRIKALHA 150 (205)
T ss_pred hhhHHHHHHHHHHHHH
No 213
>PRK14143 heat shock protein GrpE; Provisional
Probab=22.24 E-value=6.5e+02 Score=23.55 Aligned_cols=27 Identities=15% Similarity=0.106 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhcCCchhHHHHhhh
Q 021571 192 FRIEQDIMQTIAKAGVNKDCELRKLLD 218 (310)
Q Consensus 192 lRIE~dIm~Avakag~~~~~El~kil~ 218 (310)
.|.++++-++...|..+.--+|+.++|
T Consensus 102 KR~~kE~e~~~~~a~~~~~~~lLpV~D 128 (238)
T PRK14143 102 KRTSREQEDLRLQLKCNTLSEILPVVD 128 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555555555555555554
No 214
>PRK15471 chain length determinant protein WzzB; Provisional
Probab=22.15 E-value=1.6e+02 Score=28.29 Aligned_cols=49 Identities=27% Similarity=0.388 Sum_probs=39.9
Q ss_pred hhhhhhhHhhhhhcccchhHHHHHHHHhH-hhHHHHHHhhHHHHHHHHHHHHh
Q 021571 240 HKLKDEIKIMSAHWKLKTKELESQLEKQR-RADQELKKRVLKLEFCLQEARAQ 291 (310)
Q Consensus 240 akLrdeiri~SaHW~~ktKELEsQlekqR-R~dQElKkrVlkLEfclqEaRsq 291 (310)
..+.++| ..-|..|+..+..|+.-++ ++..+..-|+-+|+..|+=|+++
T Consensus 161 ~~l~~~i---~~~i~~~~~~l~~~~~~~~~~ak~~~~~~I~rL~~AL~IA~aa 210 (325)
T PRK15471 161 KELEKDL---KDNIALRTKTLQDSLETQEVVAQEQKDLRIKQIQEALQYANQA 210 (325)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444554 3568999999999999999 77777888999999999998864
No 215
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.14 E-value=1.5e+02 Score=31.06 Aligned_cols=53 Identities=26% Similarity=0.533 Sum_probs=0.0
Q ss_pred HHhhhhhhccchhHhhhhhhhhHhhhhhcccchhHHH-------HHHHHhHhhHHHHHHhhHHH
Q 021571 225 FERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELE-------SQLEKQRRADQELKKRVLKL 281 (310)
Q Consensus 225 ~e~inkll~~kD~eIakLrdeiri~SaHW~~ktKELE-------sQlekqRR~dQElKkrVlkL 281 (310)
|+-+++-+.|-|++..--|+.|++++ .+-+||- ..+++.||.-+||-+|+|++
T Consensus 336 F~dL~~R~K~Q~q~~~~~r~ri~~i~----e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv 395 (508)
T KOG3091|consen 336 FEDLRQRLKVQDQEVKQHRIRINAIG----ERVTELQKHHADAVAKIEEAKNRHVELSHRILRV 395 (508)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
No 216
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.01 E-value=74 Score=31.41 Aligned_cols=24 Identities=42% Similarity=0.531 Sum_probs=21.2
Q ss_pred ccchhHHHHHHHHhHhhHHHHHHh
Q 021571 254 KLKTKELESQLEKQRRADQELKKR 277 (310)
Q Consensus 254 ~~ktKELEsQlekqRR~dQElKkr 277 (310)
..|.+||..+-|.-||..||||+|
T Consensus 63 ~~kq~eL~~rqeEL~Rke~ELdRR 86 (313)
T KOG3088|consen 63 AKKQAELLKKQEELRRKEQELDRR 86 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHH
Confidence 357899999999999999999988
No 217
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=21.58 E-value=1.3e+03 Score=26.81 Aligned_cols=104 Identities=21% Similarity=0.328 Sum_probs=61.2
Q ss_pred hchHHHHHHHHHHHhhhhhhhh----------hhhhhHHHHH-HHHhhHhhhHhHHHHhhHhhHHhH-------HHHHHH
Q 021571 80 KNMEDEICKLQKTLEERNGRLQ----------ASACTAEKYL-MQLDGLRSQLAATKATADASAASA-------QSAQLQ 141 (310)
Q Consensus 80 k~ME~Ei~kLqK~Leek~~QL~----------as~~stekyl-~eLD~lRSQLs~tqATAeaSaaSA-------qsaqlq 141 (310)
+.|.++|+.++..+.++..-++ ...-.+..+. .+|.+|--.|-.+.+++++++.-- +.-++-
T Consensus 744 ~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE 823 (1174)
T KOG0933|consen 744 KELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLE 823 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677666666655554443 3333333344 577888888888888888876532 344555
Q ss_pred HHHHHhhhhhhhcchhhhhhHhhhhHHHHHhHHHHHhhhhhh
Q 021571 142 CLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESS 183 (310)
Q Consensus 142 Cl~L~keL~eK~~sLkEhE~rV~~LgEQLD~LQKdLqaRE~S 183 (310)
|-.|-+++.--...|..|+.....|..+++++.-.+..=+..
T Consensus 824 ~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~ 865 (1174)
T KOG0933|consen 824 HEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKD 865 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Confidence 666666655555566666666666666666555444443333
No 218
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=21.32 E-value=5.4e+02 Score=24.23 Aligned_cols=71 Identities=21% Similarity=0.389 Sum_probs=46.4
Q ss_pred HhhhhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhhccchhHhhh
Q 021571 162 RVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHK 241 (310)
Q Consensus 162 rV~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dIm~Avakag~~~~~El~kil~evspkn~e~inkll~~kD~eIak 241 (310)
-+.++++-|--+|-|.++ +|-|||.-|.+.++--|. .| +.-=+.|.+...+.|-||++
T Consensus 69 ~L~~fae~la~vqDYRqa----------~v~RlE~KVv~pL~~Y~~--~c----------K~~r~elK~~~~ar~kEikq 126 (219)
T PF06730_consen 69 GLKNFAECLAKVQDYRQA----------EVERLEAKVVEPLSQYGT--IC----------KHARDELKKFNKARNKEIKQ 126 (219)
T ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHhhhHHHHHHH--HH----------HHHHHHHHHHHHHHHHHHHH
Confidence 456788888888877765 689999999998877663 11 11112345556677777777
Q ss_pred hh--hhhHhhhhhcc
Q 021571 242 LK--DEIKIMSAHWK 254 (310)
Q Consensus 242 Lr--deiri~SaHW~ 254 (310)
++ +.+|-=++.=+
T Consensus 127 ~~~Leklr~k~psdr 141 (219)
T PF06730_consen 127 LKQLEKLRQKNPSDR 141 (219)
T ss_pred HHHHHHHHccCCccc
Confidence 77 35555444433
No 219
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=21.12 E-value=6.8e+02 Score=23.29 Aligned_cols=94 Identities=18% Similarity=0.237 Sum_probs=46.5
Q ss_pred hHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhh---------hHHHHHHHHhhHhhhHhHHHHhhHhhHHhHHHHHHH
Q 021571 71 TRQEAEMKAKNMEDEICKLQKTLEERNGRLQASAC---------TAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQ 141 (310)
Q Consensus 71 tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~---------stekyl~eLD~lRSQLs~tqATAeaSaaSAqsaqlq 141 (310)
+++.+.....-++.++.++++.|.+-..+|..+-. .+.....-+..|+.|+...++.- +
T Consensus 164 ~~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l---------~--- 231 (362)
T TIGR01010 164 NERARKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQL---------A--- 231 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHH---------H---
Confidence 33445555566777777777777766555554322 12234455556666655444211 1
Q ss_pred HHHHHhhhhhhhcchhhhhhHhhhhHHHHHhHHHHHh
Q 021571 142 CLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQ 178 (310)
Q Consensus 142 Cl~L~keL~eK~~sLkEhE~rV~~LgEQLD~LQKdLq 178 (310)
.+.....+.+-.+..-..++..|..||+...+.+.
T Consensus 232 --~l~~~~~~~~P~v~~l~~~i~~l~~~i~~e~~~i~ 266 (362)
T TIGR01010 232 --QLRSITPEQNPQVPSLQARIKSLRKQIDEQRNQLS 266 (362)
T ss_pred --HHHhhCCCCCCchHHHHHHHHHHHHHHHHHHHHhh
Confidence 11112233344444445555566666555554443
No 220
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.05 E-value=3.8e+02 Score=29.41 Aligned_cols=121 Identities=31% Similarity=0.426 Sum_probs=79.9
Q ss_pred HHHhhhhhhhcchhhhhhHhhhhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHHHHHHHHhc----CCchhHHHHhhhc
Q 021571 144 ALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAG----VNKDCELRKLLDE 219 (310)
Q Consensus 144 ~L~keL~eK~~sLkEhE~rV~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dIm~Avakag----~~~~~El~kil~e 219 (310)
.++-+++++..++-+.|++-..|---+.++.++.+-=+.--+.++.+-..--.-|.+.-++-. .+--++|..
T Consensus 700 ~~s~~~~~~~~~~~~~E~~~~~LR~~~EL~~~~~~~L~~~~~~~~~~~~~~K~~i~E~~~~~~~~~~N~SK~~L~s---- 775 (852)
T KOG4787|consen 700 SKSTTLVEKTRSLEEQEERSKKLRAETELLRKDMQELETDKKTVKEFEIKYKESIFETEREKMNGERNRSKNELAA---- 775 (852)
T ss_pred cccchhhhhhhccccccccHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHhcCcccccHHHHHH----
Confidence 456688999999999999999999999999999888777777776653333233333322221 122233332
Q ss_pred cCcchHHhhhhhhccchhHhhhhhhhhHhhhhhcccchhHHHH---HHHHhHhhHHHHHH
Q 021571 220 VSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELES---QLEKQRRADQELKK 276 (310)
Q Consensus 220 vspkn~e~inkll~~kD~eIakLrdeiri~SaHW~~ktKELEs---QlekqRR~dQElKk 276 (310)
|.++-..-.+-+.+|-|+..-+-+.|+.+-.-+|+ ||.|+---.-|+|+
T Consensus 776 --------~~~~~~~AE~~~K~L~~~~~~~~~~~~~~~~~~~~~~~~L~K~~~~E~E~~~ 827 (852)
T KOG4787|consen 776 --------MKKLKDDAEEHLKKLSDDQKKNDAAWKIEKSKLEKDIALLKKQLPDEHEMKE 827 (852)
T ss_pred --------hhcchhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhh
Confidence 33333333456778889999999999988777765 55555444445443
No 221
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=21.02 E-value=2e+02 Score=27.95 Aligned_cols=50 Identities=20% Similarity=0.399 Sum_probs=41.4
Q ss_pred hhhhhhhhHhhhhhcccchhHHHHHHHHhH-hhHHHHHHhhHHHHHHHHHHHHh
Q 021571 239 IHKLKDEIKIMSAHWKLKTKELESQLEKQR-RADQELKKRVLKLEFCLQEARAQ 291 (310)
Q Consensus 239 IakLrdeiri~SaHW~~ktKELEsQlekqR-R~dQElKkrVlkLEfclqEaRsq 291 (310)
...+.++|+ .-|..|+..+..|++-++ ++.-+..-|+-+|+..|+=|.++
T Consensus 200 ~~~l~~~i~---~~~~~k~~~~~~~~~~~~~~ak~~~~~~i~rl~~AL~IA~aa 250 (377)
T PRK10381 200 VKEVLENIR---NKLEIKTQFEKEKLAMDRIKLKNQLDANIQRLNYSLSIANAA 250 (377)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344566654 578999999999999999 78888999999999999988764
No 222
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=20.76 E-value=9.5e+02 Score=25.07 Aligned_cols=113 Identities=25% Similarity=0.304 Sum_probs=73.6
Q ss_pred HHHhhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhhHhHHHHhhHhhHHhHHHHHHHHH-HHHhhhhhhh
Q 021571 75 AEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCL-ALVKELDEKN 153 (310)
Q Consensus 75 AE~kak~ME~Ei~kLqK~Leek~~QL~as~~stekyl~eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl-~L~keL~eK~ 153 (310)
-.+-...|++|+..-++|++.-.+|=... +-+.+++|++.+.-. .--++|=+ .+.++=.+=+
T Consensus 148 ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~--~~~~~~~e~~~l~~e---------------E~~L~q~lk~le~~~~~l~ 210 (447)
T KOG2751|consen 148 LDKEVEDAEDEVDTYKACLQRLEQQNQDV--SEEDLLKELKNLKEE---------------EERLLQQLEELEKEEAELD 210 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCccc--chHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHH
Confidence 44556789999999999998877776654 556677777765321 01112212 1222223356
Q ss_pred cchhhhhhHhhhhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHHHHHHHH
Q 021571 154 SSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAK 204 (310)
Q Consensus 154 ~sLkEhE~rV~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dIm~Avak 204 (310)
.-|.||+.+..++.++-+...++---=..++-+.-||+-.||.-|-=+.+.
T Consensus 211 ~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~q 261 (447)
T KOG2751|consen 211 HQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQ 261 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHH
Confidence 778888888888888887777766666666667777777777766555443
No 223
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=20.72 E-value=1.1e+03 Score=25.60 Aligned_cols=82 Identities=21% Similarity=0.274 Sum_probs=53.2
Q ss_pred hHHhhhhhhccchhHhhhhhhhhHhhh-------hhcccchhHHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHhhHHHH
Q 021571 224 NFERINKLLVVKDEEIHKLKDEIKIMS-------AHWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQ 296 (310)
Q Consensus 224 n~e~inkll~~kD~eIakLrdeiri~S-------aHW~~ktKELEsQlekqRR~dQElKkrVlkLEfclqEaRsqtrKlQ 296 (310)
+++..+-.|+-||.+|++|-.+|.=+- .-|+.--.-||.|+..-+-+-.|||++.-.- ==.=+-+-.++-|+
T Consensus 279 ~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~-sDYeeIK~ELsiLk 357 (629)
T KOG0963|consen 279 DIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSR-SDYEEIKKELSILK 357 (629)
T ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHHHHH
Confidence 455556678889999999999986543 3488888889999998888888887764221 00112333444555
Q ss_pred HHHhhhhccC
Q 021571 297 RVMLYISYHS 306 (310)
Q Consensus 297 r~~~~~~~~~ 306 (310)
-|.+-.|-|+
T Consensus 358 ~ief~~se~a 367 (629)
T KOG0963|consen 358 AIEFGDSEEA 367 (629)
T ss_pred HhhcCCcccc
Confidence 5555444443
No 224
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=20.69 E-value=7.4e+02 Score=23.57 Aligned_cols=106 Identities=23% Similarity=0.229 Sum_probs=0.0
Q ss_pred hHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhhHhHHHHhhHhhHHhHHHHHHHH
Q 021571 63 QCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQC 142 (310)
Q Consensus 63 q~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~stekyl~eLD~lRSQLs~tqATAeaSaaSAqsaqlqC 142 (310)
+.|.++......-.......+.|+.+|++.-++-..+|..--..-+....|+..+..++....... ....-..
T Consensus 29 ~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE-------~~~~~~~ 101 (314)
T PF04111_consen 29 QEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEE-------EEYWREY 101 (314)
T ss_dssp -------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Q ss_pred HHHHhhhhhhhcchhhhhhHhhhhHHHHHhHHH
Q 021571 143 LALVKELDEKNSSLKEHEDRVTRLGQQLDNLQK 175 (310)
Q Consensus 143 l~L~keL~eK~~sLkEhE~rV~~LgEQLD~LQK 175 (310)
..+-.++.+-...+..=+.++.....|||.|++
T Consensus 102 n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 102 NELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 225
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=20.48 E-value=7.1e+02 Score=24.62 Aligned_cols=101 Identities=15% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHhHHHHHhhhhhhHHhHhHHHHHHHHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhhccchhHhhhhhhhhH
Q 021571 168 QQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIK 247 (310)
Q Consensus 168 EQLD~LQKdLqaRE~SQkQLKDeVlRIE~dIm~Avakag~~~~~El~kil~evspkn~e~inkll~~kD~eIakLrdeir 247 (310)
+.+..|++.++.=+--...+.++.-.++.-| ..+...+.+....+.+=+ .-.+.+.+.+..++..=.++++.++.+++
T Consensus 71 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (525)
T TIGR02231 71 ERLAELRKQIRELEAELRDLEDRGDALKALA-KFLEDIREGLTEPIKDSA-KRNEPDLKEWFQAFDFNGSEIERLLTEDR 148 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhcccccccc-ccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhcccchhHHHHHHHHhHhhHHHHHHhhHHH
Q 021571 248 IMSAHWKLKTKELESQLEKQRRADQELKKRVLKL 281 (310)
Q Consensus 248 i~SaHW~~ktKELEsQlekqRR~dQElKkrVlkL 281 (310)
+++.++++.++.-++|.+++-.|
T Consensus 149 -----------~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 149 -----------EAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHhh
No 226
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=20.43 E-value=3.1e+02 Score=19.07 Aligned_cols=83 Identities=17% Similarity=0.256 Sum_probs=37.4
Q ss_pred HHHHHHHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhcchhhhhhHhhhhHHHHHhHHHHHhhhhhhHHhH
Q 021571 108 EKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQL 187 (310)
Q Consensus 108 ekyl~eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~LgEQLD~LQKdLqaRE~SQkQL 187 (310)
.+|..+++++-.-|..+.+.-..... ..-.-.+..+++.+..-...+..|+.+|+.|-+.-+.|. ... ...-..+
T Consensus 4 ~~f~~~~~~l~~Wl~~~e~~l~~~~~--~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~-~~~--~~~~~~i 78 (105)
T PF00435_consen 4 QQFQQEADELLDWLQETEAKLSSSEP--GSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLI-DSG--PEDSDEI 78 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSCTH--SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTT--HTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH-HcC--CCcHHHH
Confidence 45667777777666666655411111 000111222233333333345556666666655555552 211 3333455
Q ss_pred hHHHHHHH
Q 021571 188 KDEVFRIE 195 (310)
Q Consensus 188 KDeVlRIE 195 (310)
++.+-.|.
T Consensus 79 ~~~~~~l~ 86 (105)
T PF00435_consen 79 QEKLEELN 86 (105)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544444
No 227
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=20.43 E-value=1.1e+03 Score=25.69 Aligned_cols=104 Identities=27% Similarity=0.314 Sum_probs=71.9
Q ss_pred hhhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhhccchhHhhhhh
Q 021571 164 TRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLK 243 (310)
Q Consensus 164 ~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dIm~Avakag~~~~~El~kil~evspkn~e~inkll~~kD~eIakLr 243 (310)
..++-.-..|-+-|+.|+-.-..|.++--+.|.||-...++. ..-.-|++-||
T Consensus 102 ~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l---------------------------~~~eken~~Lk 154 (769)
T PF05911_consen 102 AESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARL---------------------------ESTEKENSSLK 154 (769)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---------------------------HHHHHHHHHHH
Confidence 334444445666677777777788888888888876666543 12235788899
Q ss_pred hhhHhhhhhcccchhHHHHHH---HHhHhhHHHHHHhhHHHHHHHHHHHHhhHH
Q 021571 244 DEIKIMSAHWKLKTKELESQL---EKQRRADQELKKRVLKLEFCLQEARAQTRK 294 (310)
Q Consensus 244 deiri~SaHW~~ktKELEsQl---ekqRR~dQElKkrVlkLEfclqEaRsqtrK 294 (310)
-|+.+++-.-..|+.|.|=-. |--.+.-.|==|+|-|||-=-|--|.=+||
T Consensus 155 ye~~~~~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~rk 208 (769)
T PF05911_consen 155 YELHVLSKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRALVRK 208 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999888887877765321 222333456678999999988888888776
No 228
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=20.31 E-value=1.2e+03 Score=25.78 Aligned_cols=151 Identities=19% Similarity=0.168 Sum_probs=98.8
Q ss_pred hHHHHHHHHHHHHhhhhhhhcchhhhhhHhhhhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHHHHHHHHhcCCchhHH
Q 021571 134 SAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCEL 213 (310)
Q Consensus 134 SAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dIm~Avakag~~~~~El 213 (310)
|+.-+|-+|-..--.+....+.+..-+-+.++-..|++..++-+.++.-++.++.++-.-+.+-+-.--+. +..-.+
T Consensus 166 s~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a~~~~ql~~~---~ele~i 242 (716)
T KOG4593|consen 166 SLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEERADHEQQNAELEQQLSLS---EELEAI 242 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhh---hHHHHH
Confidence 33456778888877888889999999999999999999999999999999999999977666544332211 111111
Q ss_pred HHh-------hhccCcchHHhhhhhhccchhHhhhhhhhhHhhhhhcccchhHHHHHHHHhHhhHHHHHHhhHHHHHHHH
Q 021571 214 RKL-------LDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQ 286 (310)
Q Consensus 214 ~ki-------l~evspkn~e~inkll~~kD~eIakLrdeiri~SaHW~~ktKELEsQlekqRR~dQElKkrVlkLEfclq 286 (310)
-++ +.++--.+.+.+ +|.+.+|+ -+..++||+.--+-|++.|-.. -.|+-+++-||. +
T Consensus 243 ~~~~~dqlqel~~l~~a~~q~~--------ee~~~~re-~~~tv~~LqeE~e~Lqskl~~~----~~l~~~~~~LEL--e 307 (716)
T KOG4593|consen 243 NKNMKDQLQELEELERALSQLR--------EELATLRE-NRETVGLLQEELEGLQSKLGRL----EKLQSTLLGLEL--E 307 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH-hhhhhHHHHHHHHHHHHHHHHH----HHHHHHHhhHHH--H
Confidence 111 111112222222 34555554 3567799998888888776544 368888888884 3
Q ss_pred HHHHhhHHHHHHHhhhh
Q 021571 287 EARAQTRKLQRVMLYIS 303 (310)
Q Consensus 287 EaRsqtrKlQr~~~~~~ 303 (310)
--+-+ -||+|.-.|++
T Consensus 308 N~~l~-tkL~rwE~~~~ 323 (716)
T KOG4593|consen 308 NEDLL-TKLQRWERADQ 323 (716)
T ss_pred HHHHH-HHHHHHHHHhh
Confidence 33333 35677666654
No 229
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=20.30 E-value=1.5e+03 Score=27.11 Aligned_cols=60 Identities=20% Similarity=0.184 Sum_probs=35.5
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHH
Q 021571 30 LKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKL 89 (310)
Q Consensus 30 LkDL~EKK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kL 89 (310)
+.+|.++-+.-=+.+-.+.+=|-.-++-++.-|++...--.+|+.||.--..||+=+.-|
T Consensus 1513 i~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL 1572 (1758)
T KOG0994|consen 1513 IQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEAL 1572 (1758)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 345554432222222223455666667777777777766677788887777777655444
No 230
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=20.29 E-value=1.1e+03 Score=25.29 Aligned_cols=201 Identities=17% Similarity=0.196 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhh-----hhhH
Q 021571 33 LNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQAS-----ACTA 107 (310)
Q Consensus 33 L~EKK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~as-----~~st 107 (310)
+..-...++.=+..+-.-+-.....|....-.+.+....+.-.....-++..+...+.+-+......-.-+ ..-.
T Consensus 98 ~~~~~~~~~~~~~~~q~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 177 (670)
T KOG0239|consen 98 VEAYNERLRDLLSELQSNLSELNMALLESVEELSQAEEDNPSIFVSLLELAQENRGLYLDLSKVTPENSLSLLDLALKES 177 (670)
T ss_pred HHHHHHHHhhhccccccchhhhhhhhhhhhHhhhhhhcccccHHHHHHHHHhhhccccccccccchhhhHHHHHHHHHHH
Q ss_pred HHHHHHHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhh------hhhhhcchhhhhhHhhhhHHHHHhHHHHHhhhh
Q 021571 108 EKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKE------LDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARE 181 (310)
Q Consensus 108 ekyl~eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~ke------L~eK~~sLkEhE~rV~~LgEQLD~LQKdLqaRE 181 (310)
.++..++-.+..+|.-.+++-+.--....++|..=..|... +-.++..|..-+.-..+- ++.||..++.-+
T Consensus 178 ~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~---i~~l~~~l~~l~ 254 (670)
T KOG0239|consen 178 LKLESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLGNYADLRRNIKPLEGLESTIKKK---IQALQQELEELK 254 (670)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHH---HHHHHHHHHHHH
Q ss_pred hhHHhHhHHHHHHHHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhhccchhHhhhhhhhh
Q 021571 182 SSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEI 246 (310)
Q Consensus 182 ~SQkQLKDeVlRIE~dIm~Avakag~~~~~El~kil~evspkn~e~inkll~~kD~eIakLrdei 246 (310)
-..+.+++.+..+-..+-+++...+.. ..++...|-.-..+. .+.++..+|..+|
T Consensus 255 ~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~L~~~~~~l~~~~--~e~~~r~kL~N~i 309 (670)
T KOG0239|consen 255 AELKELNDQVSLLTREVQEALKESNTL--------QSDLESLEENLVEKK--KEKEERRKLHNEI 309 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH--HHHHHHHHHHHHH
No 231
>PF01813 ATP-synt_D: ATP synthase subunit D ; InterPro: IPR002699 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the D subunit found in V1 and A1 complexes of V- and A-ATPases, respectively. Subunit D appears to be located in the central stalk, whereas subunits E and G form part of the peripheral stalk connecting V1 and V0. This subunit is the most likely homologue to the gamma subunit of the F1 complex in F-ATPases, which undergoes rotation during ATP hydrolysis and serves an essential function in rotary catalysis [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0042626 ATPase activity, coupled to transmembrane movement of substances, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3A5C_G 3A5D_G 3J0J_G 3AON_A.
Probab=20.09 E-value=3.3e+02 Score=23.56 Aligned_cols=72 Identities=24% Similarity=0.274 Sum_probs=35.7
Q ss_pred CCCCCCCCccccChhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHh
Q 021571 15 SSSSSSVPAREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLE 94 (310)
Q Consensus 15 ~~~sss~~~~elDPLLkDL~EKK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Le 94 (310)
+.++.+|+.....|-+.+..++ |++-+ +.-.++|+ .|+....+..||.+-+++.+
T Consensus 104 ~~~~~~y~~~~~~~~~d~a~~~---~~~~l--------~~~i~lA~--------------~e~~~~~L~~ei~kT~RRVN 158 (196)
T PF01813_consen 104 PFPSPPYGLLGTPPWLDEAREK---FEELL--------ELLIELAE--------------LETALRRLAEEIRKTQRRVN 158 (196)
T ss_dssp TTS------TT--HHHHHHHHH---HHHHH--------HHHHCHHH--------------HHHHHHHHCHHHHHHCHHHH
T ss_pred ccccccCCcccCCHHHHHHHHH---HHHHH--------HHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777665543 33322 22233333 45556677888888887776
Q ss_pred hhhhhhhhhhhhHHHHH
Q 021571 95 ERNGRLQASACTAEKYL 111 (310)
Q Consensus 95 ek~~QL~as~~stekyl 111 (310)
--..-+--....|-+|+
T Consensus 159 ALE~vlIP~l~~tik~I 175 (196)
T PF01813_consen 159 ALEKVLIPRLEETIKYI 175 (196)
T ss_dssp HHHHCHHHHHCHHHHHH
T ss_pred HHHhhhccchHHHHHHH
Confidence 65554444444444544
Done!