Query 021571
Match_columns 310
No_of_seqs 20 out of 22
Neff 2.0
Searched_HMMs 29240
Date Mon Mar 25 06:04:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021571.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021571hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 97.2 0.048 1.6E-06 42.5 27.4 31 260-290 242-272 (284)
2 1c1g_A Tropomyosin; contractIl 96.7 0.16 5.4E-06 39.6 28.2 25 36-60 7-31 (284)
3 1i84_S Smooth muscle myosin he 96.2 0.013 4.3E-07 60.5 9.0 38 258-295 1070-1107(1184)
4 2fxo_A Myosin heavy chain, car 90.2 6 0.00021 31.5 12.6 28 67-94 31-58 (129)
5 3na7_A HP0958; flagellar bioge 88.4 11 0.00039 32.4 17.1 70 31-100 14-83 (256)
6 3vkg_A Dynein heavy chain, cyt 88.3 36 0.0012 40.1 20.5 41 77-117 1927-1967(3245)
7 3na7_A HP0958; flagellar bioge 88.0 12 0.00042 32.2 15.0 87 155-246 26-113 (256)
8 2dfs_A Myosin-5A; myosin-V, in 84.2 14 0.00047 38.7 13.5 47 80-126 924-974 (1080)
9 3oja_B Anopheles plasmodium-re 83.7 26 0.0009 32.0 14.2 45 164-208 540-584 (597)
10 3ghg_A Fibrinogen alpha chain; 83.5 5 0.00017 40.4 9.4 105 185-302 49-154 (562)
11 1t6f_A Geminin; coiled-coil, c 81.6 0.44 1.5E-05 33.0 0.9 21 226-246 10-30 (37)
12 2fxo_A Myosin heavy chain, car 76.9 26 0.00089 27.8 14.4 95 79-173 15-109 (129)
13 3nmd_A CGMP dependent protein 73.5 6.1 0.00021 30.3 5.3 32 82-120 38-69 (72)
14 3ghg_A Fibrinogen alpha chain; 73.5 17 0.00058 36.7 9.7 45 182-226 138-194 (562)
15 2eqb_B RAB guanine nucleotide 72.5 35 0.0012 27.3 10.7 75 49-123 19-94 (97)
16 1deq_A Fibrinogen (alpha chain 70.2 25 0.00087 34.0 9.8 50 149-198 97-157 (390)
17 3oja_B Anopheles plasmodium-re 69.3 58 0.002 29.8 11.7 16 260-275 549-564 (597)
18 3cve_A Homer protein homolog 1 68.2 17 0.00057 27.7 6.6 51 73-123 10-67 (72)
19 3vkg_A Dynein heavy chain, cyt 66.3 2.1E+02 0.0073 33.9 17.8 129 73-201 1930-2075(3245)
20 2v71_A Nuclear distribution pr 65.4 69 0.0024 27.9 11.0 120 81-200 46-181 (189)
21 2ocy_A RAB guanine nucleotide 63.4 52 0.0018 28.0 9.4 80 47-126 49-129 (154)
22 3bas_A Myosin heavy chain, str 61.0 51 0.0017 24.9 8.8 28 65-92 30-57 (89)
23 2e7s_A RAB guanine nucleotide 58.8 31 0.0011 28.9 7.2 96 75-176 37-132 (135)
24 2dfs_A Myosin-5A; myosin-V, in 58.7 1.2E+02 0.0041 31.8 13.0 86 80-175 956-1044(1080)
25 3i00_A HIP-I, huntingtin-inter 56.7 32 0.0011 27.9 6.8 52 233-291 11-62 (120)
26 3cvf_A Homer-3, homer protein 56.4 28 0.00095 26.9 6.0 51 73-123 16-73 (79)
27 1wt6_A Myotonin-protein kinase 56.2 28 0.00096 27.3 6.1 23 73-95 48-70 (81)
28 2iak_A Bullous pemphigoid anti 55.4 83 0.0028 25.6 9.5 129 28-168 53-181 (224)
29 2wt7_B Transcription factor MA 54.3 42 0.0014 26.4 6.8 82 20-122 5-86 (90)
30 3swy_A Cyclic nucleotide-gated 53.9 21 0.00072 25.2 4.6 39 158-197 2-45 (46)
31 1m1j_A Fibrinogen alpha subuni 53.1 1.1E+02 0.0038 30.5 11.0 77 139-225 106-194 (491)
32 2e7s_A RAB guanine nucleotide 50.6 85 0.0029 26.3 8.5 81 46-126 36-117 (135)
33 1m1j_C Fibrinogen gamma chain; 45.4 95 0.0032 29.6 9.0 61 219-283 73-133 (409)
34 3m9b_A Proteasome-associated A 44.0 28 0.00097 31.7 5.0 29 1-29 1-29 (251)
35 3swf_A CGMP-gated cation chann 43.7 33 0.0011 26.5 4.6 42 158-200 4-50 (74)
36 3cvf_A Homer-3, homer protein 42.8 35 0.0012 26.3 4.7 39 156-194 15-53 (79)
37 3cl3_D NF-kappa-B essential mo 41.8 48 0.0017 27.9 5.7 121 44-178 4-126 (130)
38 3cve_A Homer protein homolog 1 41.3 39 0.0013 25.7 4.7 39 156-194 9-47 (72)
39 3bas_A Myosin heavy chain, str 38.3 1.3E+02 0.0043 22.7 8.8 40 81-120 18-57 (89)
40 2xv5_A Lamin-A/C; structural p 37.8 1.3E+02 0.0043 22.6 7.4 63 36-105 6-68 (74)
41 2akf_A Coronin-1A; coiled coil 37.6 50 0.0017 22.1 4.1 28 259-286 3-30 (32)
42 4aj5_1 SKA3, spindle and kinet 37.0 1.7E+02 0.0057 23.7 8.6 81 79-159 15-96 (101)
43 3qh9_A Liprin-beta-2; coiled-c 36.0 94 0.0032 24.4 6.1 48 46-100 23-70 (81)
44 3ol1_A Vimentin; structural ge 35.6 1.6E+02 0.0055 23.1 7.8 14 82-95 67-80 (119)
45 1m46_B IQ4, IQ4 motif from MYO 35.4 21 0.00073 22.9 2.0 20 170-190 6-25 (26)
46 1f5n_A Interferon-induced guan 35.2 3.3E+02 0.011 26.7 12.5 59 38-96 462-520 (592)
47 3b8m_A Ferric enterobactin (en 34.6 51 0.0017 29.2 5.1 41 250-290 157-198 (280)
48 1t3j_A Mitofusin 1; coiled coi 33.6 92 0.0032 24.8 5.9 55 49-120 32-86 (96)
49 2bnx_A Diaphanous protein homo 32.6 18 0.00061 33.1 1.9 53 22-86 318-370 (386)
50 4h22_A Leucine-rich repeat fli 32.5 2E+02 0.0068 23.3 8.2 77 35-122 6-82 (103)
51 3s4r_A Vimentin; alpha-helix, 32.3 85 0.0029 24.0 5.4 17 108-124 52-68 (93)
52 2zuo_A MVP, major vault protei 31.8 4.9E+02 0.017 27.6 13.9 40 186-225 794-841 (861)
53 1yke_B RNA polymerase II holoe 31.2 36 0.0012 28.4 3.3 51 85-135 93-143 (151)
54 3ghg_C Fibrinogen gamma chain; 30.1 3.8E+02 0.013 25.8 10.6 90 185-287 41-137 (411)
55 3m0d_C TNF receptor-associated 29.5 1.6E+02 0.0053 21.1 6.8 33 28-60 6-38 (65)
56 1t3j_A Mitofusin 1; coiled coi 29.1 32 0.0011 27.5 2.5 31 237-267 54-90 (96)
57 3vp9_A General transcriptional 29.0 2.1E+02 0.0073 22.5 7.7 66 25-100 22-91 (92)
58 3b8o_A Lipopolysaccharide bios 28.9 35 0.0012 29.8 3.0 42 249-290 141-183 (265)
59 2z5i_A TM, general control pro 28.9 57 0.0019 23.0 3.6 25 70-94 4-29 (52)
60 2ocy_A RAB guanine nucleotide 28.5 2.7E+02 0.0093 23.6 15.1 77 43-121 14-95 (154)
61 2xdj_A Uncharacterized protein 26.5 2.1E+02 0.0073 21.7 7.3 46 75-120 25-70 (83)
62 3m91_A Proteasome-associated A 26.4 1.6E+02 0.0054 20.9 5.5 37 261-297 8-44 (51)
63 3bbp_D GRIP and coiled-coil do 26.0 48 0.0016 25.6 2.9 38 147-198 29-66 (71)
64 1sig_A Sigma70, RNA polymerase 25.9 3.3E+02 0.011 23.7 10.6 64 149-227 143-209 (339)
65 2pnv_A Small conductance calci 25.8 41 0.0014 23.4 2.3 33 144-179 9-41 (43)
66 2efr_A General control protein 23.7 3.3E+02 0.011 22.9 14.0 53 73-129 38-94 (155)
67 2i1j_A Moesin; FERM, coiled-co 23.6 52 0.0018 32.0 3.4 169 33-216 368-560 (575)
68 1s1c_X RHO-associated, coiled- 23.3 2.3E+02 0.008 21.5 6.2 28 40-67 4-31 (71)
69 3lay_A Zinc resistance-associa 23.3 1.5E+02 0.005 25.2 5.7 19 76-94 112-130 (175)
70 3okq_A BUD site selection prot 23.2 80 0.0027 26.8 4.0 44 220-266 51-94 (141)
71 1uix_A RHO-associated kinase; 22.9 2.4E+02 0.0082 21.4 6.2 28 40-67 2-29 (71)
72 3mq9_A Bone marrow stromal ant 22.4 4.2E+02 0.014 23.7 10.5 58 111-175 403-464 (471)
73 3teq_A Stromal interaction mol 22.3 1.1E+02 0.0038 24.6 4.5 39 251-298 5-43 (101)
74 2j63_A AP-endonuclease; base e 22.2 19 0.00064 33.9 0.0 34 1-34 21-54 (467)
75 2nox_A Tryptophan 2,3-dioxygen 22.1 3.7E+02 0.013 24.2 8.5 121 47-212 64-185 (281)
76 2eqb_B RAB guanine nucleotide 21.9 1.9E+02 0.0063 23.1 5.7 47 75-121 17-63 (97)
77 3mq7_A Bone marrow stromal ant 20.5 1.3E+02 0.0045 25.1 4.7 50 225-278 55-108 (121)
78 3o0z_A RHO-associated protein 20.4 4.1E+02 0.014 22.8 12.0 101 26-126 46-150 (168)
79 1j1j_A Translin; testis/brain 20.4 3E+02 0.01 23.9 7.2 36 166-205 15-50 (240)
80 2gtl_M Hemoglobin linker chain 20.4 67 0.0023 28.4 3.2 25 155-179 5-29 (217)
81 2lic_A Vitellogenin; lipid tra 20.2 47 0.0016 22.5 1.6 15 6-20 10-24 (35)
82 4etp_A Kinesin-like protein KA 20.1 2E+02 0.0068 26.7 6.4 46 76-121 16-61 (403)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.22 E-value=0.048 Score=42.53 Aligned_cols=31 Identities=10% Similarity=0.179 Sum_probs=12.4
Q ss_pred HHHHHHHhHhhHHHHHHhhHHHHHHHHHHHH
Q 021571 260 LESQLEKQRRADQELKKRVLKLEFCLQEARA 290 (310)
Q Consensus 260 LEsQlekqRR~dQElKkrVlkLEfclqEaRs 290 (310)
++.++...++.-..+...+-.++.-++..+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (284)
T 1c1g_A 242 AERSVTKLEKSIDDLEDELYAQKLKYKAISE 272 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444444444333
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=96.66 E-value=0.16 Score=39.56 Aligned_cols=25 Identities=12% Similarity=0.072 Sum_probs=9.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhhhh
Q 021571 36 KKQSFRKNVVSLAAELKEVRTRLAS 60 (310)
Q Consensus 36 KK~sfRRNVvsLaaELKd~R~rLas 60 (310)
|-.+++..+..+..++.++...++.
T Consensus 7 ~~~~l~~~~~~~~~~~~~l~~~l~~ 31 (284)
T 1c1g_A 7 KMQMLKLDKENALDRADEAEADKKA 31 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444333
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.23 E-value=0.013 Score=60.47 Aligned_cols=38 Identities=29% Similarity=0.240 Sum_probs=0.0
Q ss_pred hHHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHhhHHH
Q 021571 258 KELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKL 295 (310)
Q Consensus 258 KELEsQlekqRR~dQElKkrVlkLEfclqEaRsqtrKl 295 (310)
++++.+++..+..-++++.++-.+|.=+++.+.+...+
T Consensus 1070 ~~l~~el~el~~el~~le~~l~~le~el~~l~~~le~l 1107 (1184)
T 1i84_S 1070 SDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDE 1107 (1184)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555444555555555555665555555544443
No 4
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=90.17 E-value=6 Score=31.49 Aligned_cols=28 Identities=29% Similarity=0.276 Sum_probs=14.1
Q ss_pred HHHhhHHHHHHhhhchHHHHHHHHHHHh
Q 021571 67 KETLTRQEAEMKAKNMEDEICKLQKTLE 94 (310)
Q Consensus 67 kEt~tRk~AE~kak~ME~Ei~kLqK~Le 94 (310)
++...|++.|.+...+..|+..|+..|+
T Consensus 31 k~e~~r~ele~~~~~l~~Ek~~L~~qL~ 58 (129)
T 2fxo_A 31 KSEARRKELEEKMVSLLQEKNDLQLQVQ 58 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555554443
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=88.42 E-value=11 Score=32.35 Aligned_cols=70 Identities=6% Similarity=0.141 Sum_probs=44.0
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhh
Q 021571 31 KDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRL 100 (310)
Q Consensus 31 kDL~EKK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL 100 (310)
.+++-+-..++.-.-.|-+||.++...++.-...+..=.......+...+..|.+|..+...+..-..+|
T Consensus 14 Q~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l 83 (256)
T 3na7_A 14 SHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKM 83 (256)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555556667777777777666666655555555666666677777777766666655555
No 6
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=88.26 E-value=36 Score=40.06 Aligned_cols=41 Identities=24% Similarity=0.274 Sum_probs=31.5
Q ss_pred HhhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhH
Q 021571 77 MKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGL 117 (310)
Q Consensus 77 ~kak~ME~Ei~kLqK~Leek~~QL~as~~stekyl~eLD~l 117 (310)
.|...-.+.|..||+.|.++..+|......|++.+.++..=
T Consensus 1927 ~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~ 1967 (3245)
T 3vkg_A 1927 KKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQD 1967 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555567888888888888888888888888888776543
No 7
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=87.96 E-value=12 Score=32.17 Aligned_cols=87 Identities=21% Similarity=0.228 Sum_probs=56.3
Q ss_pred chhhhhhHhhhhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHHHHHHHHhcCCchhHHHHhhhcc-CcchHHhhhhhhc
Q 021571 155 SLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEV-SPKNFERINKLLV 233 (310)
Q Consensus 155 sLkEhE~rV~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dIm~Avakag~~~~~El~kil~ev-spkn~e~inkll~ 233 (310)
-++++-..|..+..++..++..+.+-.---..++.++.++|.||-+.-++..... +-++.| +||=++.+.+=+.
T Consensus 26 ~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~-----~~l~~v~~~kE~~aL~kEie 100 (256)
T 3na7_A 26 LIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQ-----KKMSEIKSERELRSLNIEED 100 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHCSSSSHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHccCCHHHHHHHHHHHH
Confidence 3444556677777777777777777777777888888888888888776663222 222333 5666666666555
Q ss_pred cchhHhhhhhhhh
Q 021571 234 VKDEEIHKLKDEI 246 (310)
Q Consensus 234 ~kD~eIakLrdei 246 (310)
.-..+|..|.++|
T Consensus 101 ~~~~~i~~lE~ei 113 (256)
T 3na7_A 101 IAKERSNQANREI 113 (256)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555554
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=84.18 E-value=14 Score=38.69 Aligned_cols=47 Identities=21% Similarity=0.339 Sum_probs=10.6
Q ss_pred hchHHHHHHHHHHHhhh---hhhhhhhhhhH-HHHHHHHhhHhhhHhHHHH
Q 021571 80 KNMEDEICKLQKTLEER---NGRLQASACTA-EKYLMQLDGLRSQLAATKA 126 (310)
Q Consensus 80 k~ME~Ei~kLqK~Leek---~~QL~as~~st-ekyl~eLD~lRSQLs~tqA 126 (310)
..||.+|..|+.+|++. +..|++..... ++...|...|+.++...+.
T Consensus 924 ~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~ 974 (1080)
T 2dfs_A 924 IGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRM 974 (1080)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777653 33444433222 3344566666555544433
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=83.67 E-value=26 Score=32.04 Aligned_cols=45 Identities=29% Similarity=0.285 Sum_probs=30.3
Q ss_pred hhhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHHHHHHHHhcCC
Q 021571 164 TRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVN 208 (310)
Q Consensus 164 ~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dIm~Avakag~~ 208 (310)
.++..+.+.+++.++...-...++++|+-.+..+|.+-..+...|
T Consensus 540 ~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~ 584 (597)
T 3oja_B 540 EDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRN 584 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred hhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344555666666666666667788888888888887777666443
No 10
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=83.46 E-value=5 Score=40.37 Aligned_cols=105 Identities=18% Similarity=0.175 Sum_probs=63.4
Q ss_pred HhHhHHHHHHHHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhhccchhHh-hhhhhhhHhhhhhcccchhHHHHH
Q 021571 185 KQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEI-HKLKDEIKIMSAHWKLKTKELESQ 263 (310)
Q Consensus 185 kQLKDeVlRIE~dIm~Avakag~~~~~El~kil~evspkn~e~inkll~~kD~eI-akLrdeiri~SaHW~~ktKELEsQ 263 (310)
=+|+.-+.+.|+|++..| ++|++-++++ -+|+..++.....+-+++ .++.+.. -+.....--+.|||.+
T Consensus 49 CrLQglLdkqErDltkrI--------NELKnqLEdl-sKnsKdseqy~k~~~E~Lr~rq~q~~-dNdNtynE~S~ELRRr 118 (562)
T 3ghg_A 49 CRMKGLIDEVNQDFTNRI--------NKLKNSLFEY-QKNNKDSHSLTTNIMEILRGDFSSAN-NRDNTYNRVSEDLRSR 118 (562)
T ss_dssp HHHHHHHHHHHHHHHHHH--------HHHHHHHTHH-HHHHHHHHHHHHHHHHTTSSHHHHHH-HHHHHHHHTTHHHHHH
T ss_pred cchhhhHHhhcCcHHHHH--------HHHHHHHHHH-HhhchhHHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHHH
Confidence 368888999999999988 6789999999 899999988877666655 2232222 2222223334455555
Q ss_pred HHHhHhhHHHHHHhhHHHHHHHHHHHHhhHHHHHHHhhh
Q 021571 264 LEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRVMLYI 302 (310)
Q Consensus 264 lekqRR~dQElKkrVlkLEfclqEaRsqtrKlQr~~~~~ 302 (310)
++--++.=+.-..++-.|+=-|.+-| -|+||+-.-|
T Consensus 119 IqyLKekVdnQlsnIrvLQsnLedq~---~kIQRLEvDI 154 (562)
T 3ghg_A 119 IEVLKRKVIEKVQHIQLLQKNVRAQL---VDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 55444444443344445554444433 4455544433
No 11
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=81.58 E-value=0.44 Score=33.01 Aligned_cols=21 Identities=43% Similarity=0.586 Sum_probs=18.2
Q ss_pred HhhhhhhccchhHhhhhhhhh
Q 021571 226 ERINKLLVVKDEEIHKLKDEI 246 (310)
Q Consensus 226 e~inkll~~kD~eIakLrdei 246 (310)
+++-+-+..||+|||+||.|=
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN 30 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKEN 30 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 577888999999999999863
No 12
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=76.86 E-value=26 Score=27.78 Aligned_cols=95 Identities=18% Similarity=0.249 Sum_probs=56.7
Q ss_pred hhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhcchhh
Q 021571 79 AKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKE 158 (310)
Q Consensus 79 ak~ME~Ei~kLqK~Leek~~QL~as~~stekyl~eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~keL~eK~~sLkE 158 (310)
.+.|+++|.+|...|+.-.....---..-.++..|..+|..||.+.+.+..-.-.-...-..+...|-+.|++-..-|-+
T Consensus 15 ~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rlee 94 (129)
T 2fxo_A 15 MASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLED 94 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888888877764333333223334557788888888888777663322222233344455566677777777777
Q ss_pred hhhHhhhhHHHHHhH
Q 021571 159 HEDRVTRLGQQLDNL 173 (310)
Q Consensus 159 hE~rV~~LgEQLD~L 173 (310)
-|++...|...-..+
T Consensus 95 eee~~~~L~~~kkkl 109 (129)
T 2fxo_A 95 EEEMNAELTAKKRKL 109 (129)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 777776655443333
No 13
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=73.53 E-value=6.1 Score=30.30 Aligned_cols=32 Identities=25% Similarity=0.301 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhh
Q 021571 82 MEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQ 120 (310)
Q Consensus 82 ME~Ei~kLqK~Leek~~QL~as~~stekyl~eLD~lRSQ 120 (310)
-++-|+.|.+.|.+++..++ .+..+||.+||=
T Consensus 38 kd~~I~eLEk~L~ekd~eI~-------~LqseLDKfrSV 69 (72)
T 3nmd_A 38 RDALIDELELELDQKDELIQ-------MLQNELDKYRSV 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhcc
Confidence 35668899999999998876 566788888773
No 14
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=73.48 E-value=17 Score=36.65 Aligned_cols=45 Identities=20% Similarity=0.181 Sum_probs=30.3
Q ss_pred hhHHhHhHHHHHHHHHHHHHHHHhcC------------CchhHHHHhhhccCcchHH
Q 021571 182 SSQKQLKDEVFRIEQDIMQTIAKAGV------------NKDCELRKLLDEVSPKNFE 226 (310)
Q Consensus 182 ~SQkQLKDeVlRIE~dIm~Avakag~------------~~~~El~kil~evspkn~e 226 (310)
-+-+.++-++.|+|.||--.+..-.. .--.++.|-|..|..+|..
T Consensus 138 snLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv~a~dL~ 194 (562)
T 3ghg_A 138 KNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQVIAKDLL 194 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHHhhcccC
Confidence 33456677899999999777654321 1234688888888777753
No 15
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=72.54 E-value=35 Score=27.29 Aligned_cols=75 Identities=21% Similarity=0.210 Sum_probs=47.2
Q ss_pred HHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhh-hhHHHHHHHHhhHhhhHhH
Q 021571 49 AELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASA-CTAEKYLMQLDGLRSQLAA 123 (310)
Q Consensus 49 aELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~as~-~stekyl~eLD~lRSQLs~ 123 (310)
.+++++...+..--.-+..|-.-|..||...+.+|.|+..|--.|=+.--..-|.+ -....+-...+.|+.||.-
T Consensus 19 ~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 19 RELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444556678888999999999999999998777644333333322 2233355667777777754
No 16
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=70.22 E-value=25 Score=33.99 Aligned_cols=50 Identities=12% Similarity=0.209 Sum_probs=27.8
Q ss_pred hhhhhcchhhhhhHhhhhHHHHHhHHHHHhhhhhh-----------HHhHhHHHHHHHHHH
Q 021571 149 LDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESS-----------QKQLKDEVFRIEQDI 198 (310)
Q Consensus 149 L~eK~~sLkEhE~rV~~LgEQLD~LQKdLqaRE~S-----------QkQLKDeVlRIE~dI 198 (310)
|..+-..-...+..++.+.+.|..=+.||+.+--+ -+.++-++.|||.||
T Consensus 97 lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 97 MRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555555544444443322 234566788999999
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=69.27 E-value=58 Score=29.80 Aligned_cols=16 Identities=44% Similarity=0.711 Sum_probs=6.1
Q ss_pred HHHHHHHhHhhHHHHH
Q 021571 260 LESQLEKQRRADQELK 275 (310)
Q Consensus 260 LEsQlekqRR~dQElK 275 (310)
+|.++++++..-+|+|
T Consensus 549 le~~~~~~~~~~~~l~ 564 (597)
T 3oja_B 549 LEKQLDNKRAKQAELR 564 (597)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhHHHHHH
Confidence 3333333333333333
No 18
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=68.20 E-value=17 Score=27.73 Aligned_cols=51 Identities=25% Similarity=0.489 Sum_probs=35.7
Q ss_pred HHHHHhhhchHHHHHHHHHHHhhhh---hhhhhhhhhH----HHHHHHHhhHhhhHhH
Q 021571 73 QEAEMKAKNMEDEICKLQKTLEERN---GRLQASACTA----EKYLMQLDGLRSQLAA 123 (310)
Q Consensus 73 k~AE~kak~ME~Ei~kLqK~Leek~---~QL~as~~st----ekyl~eLD~lRSQLs~ 123 (310)
|.+|.+-..||+.|..|+..|++-- +++++-.... .-=+.||-+||-.|+-
T Consensus 10 q~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~Lak 67 (72)
T 3cve_A 10 QEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAK 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 7788899999999999999998754 2333333222 2234788888888764
No 19
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=66.35 E-value=2.1e+02 Score=33.89 Aligned_cols=129 Identities=16% Similarity=0.217 Sum_probs=67.2
Q ss_pred HHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhh-------hHHHHHHHHhhHhhhHh-------HHHHhhHhhHHhHHHH
Q 021571 73 QEAEMKAKNMEDEICKLQKTLEERNGRLQASAC-------TAEKYLMQLDGLRSQLA-------ATKATADASAASAQSA 138 (310)
Q Consensus 73 k~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~-------stekyl~eLD~lRSQLs-------~tqATAeaSaaSAqsa 138 (310)
.+|......|..|+..++..|++++.+-..-.- .|++=-.+......++. +-++-+++--+.|+-|
T Consensus 1930 ~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa 2009 (3245)
T 3vkg_A 1930 RDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPT 2009 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 456777778888888888888888765543322 22222222222222221 1122222111111111
Q ss_pred ---HHHHHHHHhhhhhhhcchhhhhhHhhhhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHHHHH
Q 021571 139 ---QLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQT 201 (310)
Q Consensus 139 ---qlqCl~L~keL~eK~~sLkEhE~rV~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dIm~A 201 (310)
.-.--.+-++|......|.+-+..+..|.+.|+.|+..++..---...|++++-..+.=+-.|
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA 2075 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRS 2075 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001122334555566667777777777777777777777665555556666666655554444
No 20
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=65.40 E-value=69 Score=27.91 Aligned_cols=120 Identities=18% Similarity=0.190 Sum_probs=55.6
Q ss_pred chHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhhHhHHHHhhHhhHH----hHHHHHHHHHHHHhhhh------
Q 021571 81 NMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAA----SAQSAQLQCLALVKELD------ 150 (310)
Q Consensus 81 ~ME~Ei~kLqK~Leek~~QL~as~~stekyl~eLD~lRSQLs~tqATAeaSaa----SAqsaqlqCl~L~keL~------ 150 (310)
-||.||..+.|...+-..++.--..-.+.|-..++...++...+...-+.-.. .-...+.+|..|=-.-|
T Consensus 46 ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~ 125 (189)
T 2v71_A 46 ELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAK 125 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 36777777776655544443333333444444444444443333222222111 11222333333222211
Q ss_pred -hhhcchhhhhhHhhhhHHHHHhHHHHHhhhhhhH---HhHhHHH--HHHHHHHHH
Q 021571 151 -EKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQ---KQLKDEV--FRIEQDIMQ 200 (310)
Q Consensus 151 -eK~~sLkEhE~rV~~LgEQLD~LQKdLqaRE~SQ---kQLKDeV--lRIE~dIm~ 200 (310)
...+||..-|.+.|.+=|..-.|+-+|..|+--+ --||||+ +++|-+|++
T Consensus 126 R~~~~SleD~e~kln~aiEr~alLE~El~EKe~l~~~~QRLkdE~rDLk~El~v~~ 181 (189)
T 2v71_A 126 RATIMSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQELAVRE 181 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------------------
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1567888899999999999999999998766322 1366663 555555544
No 21
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=63.35 E-value=52 Score=27.97 Aligned_cols=80 Identities=20% Similarity=0.206 Sum_probs=46.5
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhh-hhhhhhhhhhHHHHHHHHhhHhhhHhHHH
Q 021571 47 LAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEER-NGRLQASACTAEKYLMQLDGLRSQLAATK 125 (310)
Q Consensus 47 LaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek-~~QL~as~~stekyl~eLD~lRSQLs~tq 125 (310)
|..+++++...+..--.-+..|..-|..||...+.+|.|+..|--.|=+. |.-.-+---....+=...+.|+.||.-+.
T Consensus 49 l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~ 128 (154)
T 2ocy_A 49 LKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKD 128 (154)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555556677888889999999999999998886655332 22221111112223344555555555444
Q ss_pred H
Q 021571 126 A 126 (310)
Q Consensus 126 A 126 (310)
.
T Consensus 129 ~ 129 (154)
T 2ocy_A 129 T 129 (154)
T ss_dssp H
T ss_pred H
Confidence 3
No 22
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=61.03 E-value=51 Score=24.86 Aligned_cols=28 Identities=14% Similarity=0.160 Sum_probs=18.5
Q ss_pred HHHHHhhHHHHHHhhhchHHHHHHHHHH
Q 021571 65 FVKETLTRQEAEMKAKNMEDEICKLQKT 92 (310)
Q Consensus 65 ~akEt~tRk~AE~kak~ME~Ei~kLqK~ 92 (310)
+.++...|++-|.+...+..|...|+..
T Consensus 30 l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 30 LAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666777777777777777666544
No 23
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=58.83 E-value=31 Score=28.92 Aligned_cols=96 Identities=20% Similarity=0.228 Sum_probs=37.3
Q ss_pred HHHhhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhc
Q 021571 75 AEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNS 154 (310)
Q Consensus 75 AE~kak~ME~Ei~kLqK~Leek~~QL~as~~stekyl~eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~keL~eK~~ 154 (310)
+.+..+..+.|+.+|+..|.+-..+-...-..-.+.=.||++|=..| |.+|--=.++|. ..+-.+-+....=..
T Consensus 37 l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasL-FeEAN~MVa~ar-----~~~~~~e~r~~~L~~ 110 (135)
T 2e7s_A 37 LKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL-FDEANNLVADAR-----MEKYAIEILNKRLTE 110 (135)
T ss_dssp HHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHH-HHHHHHHHHHTT-----HHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 33444566777777777776655444333333344456777765555 223322222221 122222222111122
Q ss_pred chhhhhhHhhhhHHHHHhHHHH
Q 021571 155 SLKEHEDRVTRLGQQLDNLQKD 176 (310)
Q Consensus 155 sLkEhE~rV~~LgEQLD~LQKd 176 (310)
-|++-+.++..+.+||.+|+.-
T Consensus 111 ql~e~e~ll~~lq~QL~~LK~v 132 (135)
T 2e7s_A 111 QLREKDMLLDTLTLQLKNLKKV 132 (135)
T ss_dssp TTTHHHHCC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666677666543
No 24
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=58.74 E-value=1.2e+02 Score=31.77 Aligned_cols=86 Identities=19% Similarity=0.163 Sum_probs=45.1
Q ss_pred hchHHHHHHHHHHHhhhhhh---hhhhhhhHHHHHHHHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhcch
Q 021571 80 KNMEDEICKLQKTLEERNGR---LQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSL 156 (310)
Q Consensus 80 k~ME~Ei~kLqK~Leek~~Q---L~as~~stekyl~eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~keL~eK~~sL 156 (310)
..++.|+.+|++.+++.... +.+........-.|++.++.++..+..--+ +. +-.|-.+...|.+|-++|
T Consensus 956 ~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~--~l-----ee~~~~~~~~L~~kv~~L 1028 (1080)
T 2dfs_A 956 ITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKK--TI-----EEWADKYKHETEQLVSEL 1028 (1080)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH-----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH-----HHHHHHHHHHHHHHHHHH
Confidence 45678888887766554332 222222223344677777777765443222 22 222333335666676666
Q ss_pred hhhhhHhhhhHHHHHhHHH
Q 021571 157 KEHEDRVTRLGQQLDNLQK 175 (310)
Q Consensus 157 kEhE~rV~~LgEQLD~LQK 175 (310)
.+. ...|..|+|.|..
T Consensus 1029 ~~e---~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 1029 KEQ---NTLLKTEKEELNR 1044 (1080)
T ss_dssp HHH---HHHHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHHHHH
Confidence 553 3445556666653
No 25
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=56.70 E-value=32 Score=27.86 Aligned_cols=52 Identities=33% Similarity=0.302 Sum_probs=39.7
Q ss_pred ccchhHhhhhhhhhHhhhhhcccchhHHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHh
Q 021571 233 VVKDEEIHKLKDEIKIMSAHWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQ 291 (310)
Q Consensus 233 ~~kD~eIakLrdeiri~SaHW~~ktKELEsQlekqRR~dQElKkrVlkLEfclqEaRsq 291 (310)
.=+|..|..|+-||.-+.++ ||+=.-.++|.--.|+.+|..||.=|.+.|.+
T Consensus 11 d~rD~~Ie~Lkreie~lk~e-------le~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~ 62 (120)
T 3i00_A 11 DEKDHLIERLYREISGLKAQ-------LENMKTESQRVVLQLKGHVSELEADLAEQQHL 62 (120)
T ss_dssp CTHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677899999999888764 55545556666677999999999988888744
No 26
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=56.41 E-value=28 Score=26.87 Aligned_cols=51 Identities=29% Similarity=0.457 Sum_probs=36.5
Q ss_pred HHHHHhhhchHHHHHHHHHHHhhhh---hhhhhhhhhHHH----HHHHHhhHhhhHhH
Q 021571 73 QEAEMKAKNMEDEICKLQKTLEERN---GRLQASACTAEK----YLMQLDGLRSQLAA 123 (310)
Q Consensus 73 k~AE~kak~ME~Ei~kLqK~Leek~---~QL~as~~stek----yl~eLD~lRSQLs~ 123 (310)
|.+|.+-..||+-|..|+..|++.- +++++-....-. =+.||-+||-.|+-
T Consensus 16 q~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLak 73 (79)
T 3cvf_A 16 QDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLAR 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 7788888999999999999998754 334333333222 34788888888874
No 27
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=56.19 E-value=28 Score=27.30 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=21.1
Q ss_pred HHHHHhhhchHHHHHHHHHHHhh
Q 021571 73 QEAEMKAKNMEDEICKLQKTLEE 95 (310)
Q Consensus 73 k~AE~kak~ME~Ei~kLqK~Lee 95 (310)
++||.+-+.++.||.+|++.+++
T Consensus 48 ~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 48 REAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999988
No 28
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle, spectrin repeat, cell adhesion; 3.00A {Mus musculus}
Probab=55.37 E-value=83 Score=25.58 Aligned_cols=129 Identities=14% Similarity=0.166 Sum_probs=70.6
Q ss_pred hhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhhhH
Q 021571 28 PLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTA 107 (310)
Q Consensus 28 PLLkDL~EKK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~st 107 (310)
|-+..|-.|=..|.+.|.....-++.+.. .+..|.. . -......+...++.--..|.....+|-..|. ..
T Consensus 53 ~~v~~ll~kh~~~e~ei~~~~~~v~~~~~----~~~~~~~-~-~~~~i~~~~~~l~~~~~~L~~~~~~R~~~Le----~l 122 (224)
T 2iak_A 53 PSVESHLENHKNVHRAIEEFESSLKEAKI----SEIQMTA-P-LKLSYTDKLHRLESQYAKLLNTSRNQERHLD----TL 122 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHH----HGGGCCT-T-HHHHHHHHHHHHHHHHHHTTTHHHHHHHHHH----HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhccc-c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH
Confidence 34555666667777777776665555432 2222321 1 1233445666677777778888888888887 77
Q ss_pred HHHHHHHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhcchhhhhhHhhhhHH
Q 021571 108 EKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQ 168 (310)
Q Consensus 108 ekyl~eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~LgE 168 (310)
.+|..+++++-+=+.-....+... .-..+ -..+..|.+....-.+.|..|+.+|+.|-+
T Consensus 123 ~~F~~~~~~~~~Wi~eke~~~~s~-d~g~~-l~~v~~L~~kh~~l~~el~~~~~~v~~v~~ 181 (224)
T 2iak_A 123 HNFVTRATNELIWLNEKEESEVAY-DWSER-NSSVARKKSYHAELMRELEQKEESIKAVQE 181 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCC-----------------CSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-ccCCC-chhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 889999888877776665543221 11111 113445555555555566666666665533
No 29
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=54.30 E-value=42 Score=26.38 Aligned_cols=82 Identities=16% Similarity=0.311 Sum_probs=53.3
Q ss_pred CCCccccChhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhh
Q 021571 20 SVPAREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGR 99 (310)
Q Consensus 20 s~~~~elDPLLkDL~EKK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~Q 99 (310)
+.|++|+|-+|+.|+..- .+.||+-|-+|- -.-+|+=.-+++..+. ..+|.|++.|+..++.--.+
T Consensus 5 ~msVreLN~~L~gls~ee----------v~~lKq~RRtlK--NRgyAq~CR~Kr~~q~--~~LE~e~~~L~~e~~~L~~e 70 (90)
T 2wt7_B 5 SMSVRELNRHLRGFTKDE----------VIRLKQKRRTLK--NRGYAQSCRYKRVQQK--HHLENEKTQLIQQVEQLKQE 70 (90)
T ss_dssp HSCHHHHHTTCTTCCHHH----------HHHHHHHHHHHH--HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHcCCCHHH----------HHHHHHHHHhhh--hhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 457889999988776543 357899888774 3556666666666544 67888888887665543333
Q ss_pred hhhhhhhHHHHHHHHhhHhhhHh
Q 021571 100 LQASACTAEKYLMQLDGLRSQLA 122 (310)
Q Consensus 100 L~as~~stekyl~eLD~lRSQLs 122 (310)
+ ..+..|+|.++..+.
T Consensus 71 ~-------~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 71 V-------SRLARERDAYKVKSE 86 (90)
T ss_dssp H-------HHHHHHHHHHHHHHH
T ss_pred H-------HHHHHHHHHHHHHHH
Confidence 3 334466666665543
No 30
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=53.90 E-value=21 Score=25.20 Aligned_cols=39 Identities=33% Similarity=0.593 Sum_probs=32.5
Q ss_pred hhhhHhhhhHHHHHhHHHHHhhh-----hhhHHhHhHHHHHHHHH
Q 021571 158 EHEDRVTRLGQQLDNLQKDLQAR-----ESSQKQLKDEVFRIEQD 197 (310)
Q Consensus 158 EhE~rV~~LgEQLD~LQKdLqaR-----E~SQkQLKDeVlRIE~d 197 (310)
+=|++|++|.--||.||--+ || +.||.-||-=|-.+|.-
T Consensus 2 dlEekv~~Le~~ld~LqTr~-ArLlae~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRF-ARLLAEYNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45889999999999999665 44 89999999988888863
No 31
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=53.07 E-value=1.1e+02 Score=30.49 Aligned_cols=77 Identities=23% Similarity=0.241 Sum_probs=47.3
Q ss_pred HHHHHHHHhhhhhhhcchhhhhhHhhhhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHHHHHHHHhc------------
Q 021571 139 QLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAG------------ 206 (310)
Q Consensus 139 qlqCl~L~keL~eK~~sLkEhE~rV~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dIm~Avakag------------ 206 (310)
.--|..++.+|..+..-|++ +|+.--.+|..||..|+ .++-++.|+|.||.-.+..-.
T Consensus 106 dn~~~e~S~eLe~ri~yIK~---kVd~qi~~IrvLq~~l~-------~q~skIQRLE~dI~~q~~~Cr~pC~r~~~y~VD 175 (491)
T 1m1j_A 106 DENYGHVSTELRRRIVTLKQ---RVATQVNRIKALQNSIQ-------EQVVEMKRLEVDIDIKIRACKGSCARSFDYQVD 175 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHTTTTTBSSCCCCCCC
T ss_pred hhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhcchhhhhHHhhhc
Confidence 33455555555555555553 23322255555555543 566788999999988876432
Q ss_pred CCchhHHHHhhhccCcchH
Q 021571 207 VNKDCELRKLLDEVSPKNF 225 (310)
Q Consensus 207 ~~~~~El~kil~evspkn~ 225 (310)
.....++.|.|.-|..+|.
T Consensus 176 ~~~Ye~~QKqLeQv~a~dL 194 (491)
T 1m1j_A 176 KEGYDNIQKHLTQASSIDM 194 (491)
T ss_dssp TTTTHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHhhcccc
Confidence 2445678899988876664
No 32
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=50.58 E-value=85 Score=26.29 Aligned_cols=81 Identities=22% Similarity=0.228 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhh-hhHHHHHHHHhhHhhhHhHH
Q 021571 46 SLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASA-CTAEKYLMQLDGLRSQLAAT 124 (310)
Q Consensus 46 sLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~as~-~stekyl~eLD~lRSQLs~t 124 (310)
.|..+|+++-..+..--.-+..|..-|..||...+.+|.|+..|--.|=+.--..-|.+ -....+-...+.|+.||.-+
T Consensus 36 ~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~ 115 (135)
T 2e7s_A 36 TLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREK 115 (135)
T ss_dssp HHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555566666677888999999999999999999998766643322222222 22223334555555555444
Q ss_pred HH
Q 021571 125 KA 126 (310)
Q Consensus 125 qA 126 (310)
.+
T Consensus 116 e~ 117 (135)
T 2e7s_A 116 DM 117 (135)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 33
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=45.37 E-value=95 Score=29.58 Aligned_cols=61 Identities=18% Similarity=0.209 Sum_probs=36.6
Q ss_pred ccCcchHHhhhhhhccchhHhhhhhhhhHhhhhhcccchhHHHHHHHHhHhhHHHHHHhhHHHHH
Q 021571 219 EVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQLEKQRRADQELKKRVLKLEF 283 (310)
Q Consensus 219 evspkn~e~inkll~~kD~eIakLrdeiri~SaHW~~ktKELEsQlekqRR~dQElKkrVlkLEf 283 (310)
..+|.|.+-+++-..=-.++|.+|..-|.-. ...-..|+.+++.+...-+.|+..|..|+-
T Consensus 73 ~~~~d~~e~~tq~skkml~~~~~~e~~~~~~----~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 73 QTLPQSIEQLTQKSKKIIEEIIRYENTILAH----ENTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp TCCSSCHHHHHHHHHHHHHHHHHTHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHHhcch----HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3566677666543322224555553322221 123456888888888888889988888863
No 34
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=43.99 E-value=28 Score=31.70 Aligned_cols=29 Identities=28% Similarity=0.295 Sum_probs=0.0
Q ss_pred CCCCCCCCccccCCCCCCCCCCccccChh
Q 021571 1 MSASGHRSSMSTSSSSSSSSVPAREIDPL 29 (310)
Q Consensus 1 ~~~~~~~~~~~~~~~~~sss~~~~elDPL 29 (310)
|.+++-.-...+..+.|+++...+++..|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (251)
T 3m9b_A 1 MGESERSEAFGIPRDSPLSSGDAAELEQL 29 (251)
T ss_dssp -----------------------------
T ss_pred CCCccchhhccCCccCCCcccchHHHHHH
Confidence 33333333333444445555555555553
No 35
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=43.74 E-value=33 Score=26.46 Aligned_cols=42 Identities=36% Similarity=0.510 Sum_probs=35.1
Q ss_pred hhhhHhhhhHHHHHhHHHHHhhh-----hhhHHhHhHHHHHHHHHHHH
Q 021571 158 EHEDRVTRLGQQLDNLQKDLQAR-----ESSQKQLKDEVFRIEQDIMQ 200 (310)
Q Consensus 158 EhE~rV~~LgEQLD~LQKdLqaR-----E~SQkQLKDeVlRIE~dIm~ 200 (310)
.-|.+|++|.--||.||--+ || +.||.-||-=|-.+|.-+-.
T Consensus 4 dlEEKv~~LE~sld~LQTrf-ARLLaEy~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRF-ARILAEYESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35889999999999999765 45 89999999999999986544
No 36
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=42.85 E-value=35 Score=26.31 Aligned_cols=39 Identities=23% Similarity=0.405 Sum_probs=33.0
Q ss_pred hhhhhhHhhhhHHHHHhHHHHHhhhhhhHHhHhHHHHHH
Q 021571 156 LKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRI 194 (310)
Q Consensus 156 LkEhE~rV~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRI 194 (310)
|.+=|.+=..|.+++-.|+.+|+.....|.+++-||.++
T Consensus 15 lq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l 53 (79)
T 3cvf_A 15 VQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRA 53 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555667777789999999999999999999999998764
No 37
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=41.79 E-value=48 Score=27.93 Aligned_cols=121 Identities=23% Similarity=0.279 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhhHhH
Q 021571 44 VVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAA 123 (310)
Q Consensus 44 VvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~stekyl~eLD~lRSQLs~ 123 (310)
|.||-.||.++-.+|-.-++- ++.-+.|.+..|.....+.-.+++---|+ .+.-.+..-.+.-+.+.|--
T Consensus 4 vtSL~~ELqEsqskL~~Ae~~-------k~~Leek~~~~e~~~~~~~~Elee~kqq~---~~~~d~L~lQ~esmeaalkm 73 (130)
T 3cl3_D 4 ASGSLGELQESQSRLEAATKE-------CQALEGRARAASEQARQLESEREALQQQH---SVQVDQLRMQGQSVEAALRM 73 (130)
T ss_dssp ------------------------------------------------------CTT---THHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 788999999999988644332 22233344444444444433333311222 22334555566666676666
Q ss_pred HHHhhHhhHHhHHHHHHHHHH--HHhhhhhhhcchhhhhhHhhhhHHHHHhHHHHHh
Q 021571 124 TKATADASAASAQSAQLQCLA--LVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQ 178 (310)
Q Consensus 124 tqATAeaSaaSAqsaqlqCl~--L~keL~eK~~sLkEhE~rV~~LgEQLD~LQKdLq 178 (310)
-++.+. ..=-..||||--+ |..+.|+...+.--.-.|+..+ ||+.|-..|+
T Consensus 74 Er~~~~--eEKrkLAqLQ~AY~~LfqeYd~~lK~~~~~~e~~~~~--ql~dL~qqLq 126 (130)
T 3cl3_D 74 ERQAAS--EEKRKLAQLQVAYHQLFQEYDNHIKSSVVGSERKRGM--QLEDLKQQLQ 126 (130)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------------
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc--hHHHHHHHHH
Confidence 665533 2444678887543 5556555333332233344433 7766665554
No 38
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=41.26 E-value=39 Score=25.67 Aligned_cols=39 Identities=26% Similarity=0.382 Sum_probs=32.6
Q ss_pred hhhhhhHhhhhHHHHHhHHHHHhhhhhhHHhHhHHHHHH
Q 021571 156 LKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRI 194 (310)
Q Consensus 156 LkEhE~rV~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRI 194 (310)
|.+=|.+=..|.+++-.|+.+|+.....|.+++-||.++
T Consensus 9 Lq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~ 47 (72)
T 3cve_A 9 LQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTL 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666777788999999999999999999999998764
No 39
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=38.25 E-value=1.3e+02 Score=22.67 Aligned_cols=40 Identities=13% Similarity=0.071 Sum_probs=21.3
Q ss_pred chHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhh
Q 021571 81 NMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQ 120 (310)
Q Consensus 81 ~ME~Ei~kLqK~Leek~~QL~as~~stekyl~eLD~lRSQ 120 (310)
.|++|+.+|...|+.-.....---....+++.|-.+|-.|
T Consensus 18 ~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 18 EQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888887777643333322233333444555555444
No 40
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=37.81 E-value=1.3e+02 Score=22.56 Aligned_cols=63 Identities=25% Similarity=0.365 Sum_probs=42.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhh
Q 021571 36 KKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASAC 105 (310)
Q Consensus 36 KK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~ 105 (310)
-.+.++.-+..|-+||.++|.-++.|-+-+ ++-.+-|. .+|.||.--.|.|+.....+..+.+
T Consensus 6 e~~~~~~~i~~lE~eL~~~r~e~~~ql~EY-q~LlniKl------~Le~EIatYRkLLEGEe~Rl~~~~~ 68 (74)
T 2xv5_A 6 ERDTSRRLLAEKEREMAEMRARMQQQLDEY-QELLDIKL------ALDMEIHAYRKLLEGEEERLRLSPS 68 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH------HHHHHHHHHHHHTTC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH------HHHHHHHHHHHHHhcCccccCCCCC
Confidence 346777888889999999999999886666 55555444 4899999999999877666554433
No 41
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=37.58 E-value=50 Score=22.10 Aligned_cols=28 Identities=29% Similarity=0.359 Sum_probs=23.7
Q ss_pred HHHHHHHHhHhhHHHHHHhhHHHHHHHH
Q 021571 259 ELESQLEKQRRADQELKKRVLKLEFCLQ 286 (310)
Q Consensus 259 ELEsQlekqRR~dQElKkrVlkLEfclq 286 (310)
.||..+.+-.-.-|+|.+||-+||--.|
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3677777888889999999999998776
No 42
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=37.04 E-value=1.7e+02 Score=23.75 Aligned_cols=81 Identities=11% Similarity=0.116 Sum_probs=51.6
Q ss_pred hhchHHHHHHHHHHHhhhhhhhhhhhhhHHH-HHHHHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhcchh
Q 021571 79 AKNMEDEICKLQKTLEERNGRLQASACTAEK-YLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLK 157 (310)
Q Consensus 79 ak~ME~Ei~kLqK~Leek~~QL~as~~stek-yl~eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~keL~eK~~sLk 157 (310)
|-++|-|-.+||..|+..+...+.+..-+=- ..-|+-.|..|...+-+.+.++-...-.-.=-|-.|.+..-.-...|+
T Consensus 15 a~tLe~Eta~L~~al~~edsd~E~~~~rilhdl~seV~~LK~dv~~~L~k~~~e~qe~~~FIKa~kvL~~rns~DI~~ir 94 (101)
T 4aj5_1 15 ASTLDCETARLQRALDGEESDFEDYPMRILYDLHSEVQTLKDDINILLDKARLENQEGIDFIKATKVLMEKNSMDIMKIR 94 (101)
T ss_dssp HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4578999999999999776655443222211 224556777777777666666655555555668777776555555566
Q ss_pred hh
Q 021571 158 EH 159 (310)
Q Consensus 158 Eh 159 (310)
||
T Consensus 95 e~ 96 (101)
T 4aj5_1 95 EY 96 (101)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 43
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=36.02 E-value=94 Score=24.38 Aligned_cols=48 Identities=23% Similarity=0.409 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhh
Q 021571 46 SLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRL 100 (310)
Q Consensus 46 sLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL 100 (310)
-|--|+++.|-|+..-|-- |---|.|.|+--+||+-||+.|+.++..+
T Consensus 23 ~L~qEi~~Lr~kv~elEnE-------rlQyEkKLKsTK~El~~Lq~qLe~kd~ei 70 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENE-------RNQYEWKLKATKAEVAQLQEQVALKDAEI 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhHHHHHHHHHHHHhhHHHH
Confidence 5788999999998765532 34468888888899999999999998644
No 44
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=35.55 E-value=1.6e+02 Score=23.12 Aligned_cols=14 Identities=7% Similarity=0.380 Sum_probs=7.8
Q ss_pred hHHHHHHHHHHHhh
Q 021571 82 MEDEICKLQKTLEE 95 (310)
Q Consensus 82 ME~Ei~kLqK~Lee 95 (310)
+|.+|..|.|-+.+
T Consensus 67 ~E~di~~lrK~lD~ 80 (119)
T 3ol1_A 67 AENTLQSFRQDVDN 80 (119)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccH
Confidence 45566666665543
No 45
>1m46_B IQ4, IQ4 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 2.10A {Saccharomyces cerevisiae}
Probab=35.42 E-value=21 Score=22.88 Aligned_cols=20 Identities=50% Similarity=0.757 Sum_probs=16.0
Q ss_pred HHhHHHHHhhhhhhHHhHhHH
Q 021571 170 LDNLQKDLQARESSQKQLKDE 190 (310)
Q Consensus 170 LD~LQKdLqaRE~SQkQLKDe 190 (310)
+.||||.+. +|+-|+|||.|
T Consensus 6 itnlqkkir-kelkqrqlkqe 25 (26)
T 1m46_B 6 ITNLQKKIR-KELKQRQLKQE 25 (26)
T ss_dssp HHHHHHHHH-HHHHHHHHHHC
T ss_pred HHHHHHHHH-HHHHHHHHhcc
Confidence 567888775 68999999976
No 46
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=35.15 E-value=3.3e+02 Score=26.67 Aligned_cols=59 Identities=19% Similarity=0.270 Sum_probs=45.5
Q ss_pred HHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhh
Q 021571 38 QSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEER 96 (310)
Q Consensus 38 ~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek 96 (310)
+.|.++..+++.-+-++-..|...|...+.|-.-+..||..++-+|+--.+++..++.+
T Consensus 462 ~~fl~~~~~~~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~ 520 (592)
T 1f5n_A 462 QTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQK 520 (592)
T ss_dssp HHHHHHTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888888888888888888777777777777776666656666655554
No 47
>3b8m_A Ferric enterobactin (enterochelin) transport; WZZ, FEPE, bacterial polysaccharide CO-polymerase, metal transport, biosynthetic protein; 2.70A {Escherichia coli} SCOP: d.58.60.1 PDB: 3b8n_A 4e2l_A
Probab=34.58 E-value=51 Score=29.24 Aligned_cols=41 Identities=22% Similarity=0.398 Sum_probs=37.3
Q ss_pred hhhcccchhHHHHHHHHhH-hhHHHHHHhhHHHHHHHHHHHH
Q 021571 250 SAHWKLKTKELESQLEKQR-RADQELKKRVLKLEFCLQEARA 290 (310)
Q Consensus 250 SaHW~~ktKELEsQlekqR-R~dQElKkrVlkLEfclqEaRs 290 (310)
..-|..|+..+..|++.++ ++..+..-||-+|+..|+-|++
T Consensus 157 ~~~i~~r~~~l~~qi~~~~~~ak~~~~~~I~rL~~AL~IA~a 198 (280)
T 3b8m_A 157 RNKLEIKTQFEKEKLAQDRIKMKNQLDANIQRLNYSLDIANA 198 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4668889999999999999 8888899999999999999987
No 48
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=33.63 E-value=92 Score=24.80 Aligned_cols=55 Identities=25% Similarity=0.387 Sum_probs=27.6
Q ss_pred HHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhh
Q 021571 49 AELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQ 120 (310)
Q Consensus 49 aELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~stekyl~eLD~lRSQ 120 (310)
.||..+.+||-.| +..--..||+||.+|.+.+. +|+.-.+.+-.+.++-.-|.+.
T Consensus 32 qELs~tfarLc~~-------------Vd~t~~eL~~EI~~L~~eI~----~LE~iqs~aK~LRnKA~~L~~e 86 (96)
T 1t3j_A 32 QEMATTFARLCQQ-------------VDMTQKHLEEEIARLSKEID----QLEKMQNNSKLLRNKAVQLESE 86 (96)
T ss_dssp ---CCHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHH
Confidence 4666666666543 33334568888877666543 4444444444443333333333
No 49
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=32.57 E-value=18 Score=33.13 Aligned_cols=53 Identities=19% Similarity=0.353 Sum_probs=11.4
Q ss_pred CccccChhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHH
Q 021571 22 PAREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEI 86 (310)
Q Consensus 22 ~~~elDPLLkDL~EKK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei 86 (310)
-.-.+++|+.+|.++. ++.++..+-..-.+-|.+++..|++|+.|...+|+|+
T Consensus 318 l~~~v~~l~d~l~~~~------------~~~~~~~~~~e~~kklee~~~~r~e~~~~~~~~e~~~ 370 (386)
T 2bnx_A 318 LQIDIERLVDQMIDKT------------KVEKSEAKATELEKKLDSELTARHELQVEMKKMENDF 370 (386)
T ss_dssp CCCCCTTTC-----CT------------HHHHHHTTTCC--------------------------
T ss_pred ccchHHHHHHHHhhhh------------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3467788998888764 2223333333345668889999999999999999975
No 50
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=32.52 E-value=2e+02 Score=23.29 Aligned_cols=77 Identities=18% Similarity=0.303 Sum_probs=51.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHH
Q 021571 35 EKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQL 114 (310)
Q Consensus 35 EKK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~stekyl~eL 114 (310)
|=...||+..|+-|- |-.=++-|.=|=..+ --+.-.||+.+..+++.+.|+.-.+...--.....-.++
T Consensus 6 EvEEKyrKAMVsnAQ-LDNEKsal~YqVdlL----------KD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~ 74 (103)
T 4h22_A 6 EVEEKYKKAMVSNAQ-LDNEKTNFMYQVDTL----------KDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQF 74 (103)
T ss_dssp --CCTHHHHHHHHHH-HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-hccHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334459999998763 444444444333222 234456888899999999999888877776666666777
Q ss_pred hhHhhhHh
Q 021571 115 DGLRSQLA 122 (310)
Q Consensus 115 D~lRSQLs 122 (310)
+.||.||.
T Consensus 75 ~~lk~~L~ 82 (103)
T 4h22_A 75 AEVKEALK 82 (103)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777775
No 51
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=32.30 E-value=85 Score=24.03 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=13.3
Q ss_pred HHHHHHHhhHhhhHhHH
Q 021571 108 EKYLMQLDGLRSQLAAT 124 (310)
Q Consensus 108 ekyl~eLD~lRSQLs~t 124 (310)
..|-.++.+||.|+..+
T Consensus 52 ~~ye~~i~~Lr~~i~~~ 68 (93)
T 3s4r_A 52 DLYEEEMRELRRQVDQL 68 (93)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34888999999988754
No 52
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=31.75 E-value=4.9e+02 Score=27.58 Aligned_cols=40 Identities=25% Similarity=0.352 Sum_probs=17.9
Q ss_pred hHhHHHHHHHHHHHHHHHHhcCCchhHHHHhh--------hccCcchH
Q 021571 186 QLKDEVFRIEQDIMQTIAKAGVNKDCELRKLL--------DEVSPKNF 225 (310)
Q Consensus 186 QLKDeVlRIE~dIm~Avakag~~~~~El~kil--------~evspkn~ 225 (310)
.|+.-|-.|-.|-..|+|+||...--.|+.=| |--||=|.
T Consensus 794 kf~~~v~aig~~ti~~ia~Agpe~q~kll~~Lgl~~~litdG~sPinL 841 (861)
T 2zuo_A 794 KFKEMTEALGPGTIRDLAVAGPEMQVKLLQSLGLKSTLITDGSSPINL 841 (861)
T ss_dssp HHHHHHHHSCTTHHHHTGGGCC--------------------------
T ss_pred HHHHHHHhhChHHHHHHHhcChHHHHHHHHhCCCceEEecCCCChHHH
Confidence 45566777888899999999976666665432 56677774
No 53
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=31.19 E-value=36 Score=28.36 Aligned_cols=51 Identities=29% Similarity=0.264 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhhHhHHHHhhHhhHHhH
Q 021571 85 EICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASA 135 (310)
Q Consensus 85 Ei~kLqK~Leek~~QL~as~~stekyl~eLD~lRSQLs~tqATAeaSaaSA 135 (310)
.|.+|++.+++...+|+....-+|..+..++++=..++..+..-...++||
T Consensus 93 ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~~ia~~~l~~r~~~~~~ 143 (151)
T 1yke_B 93 KIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIEDFVDGIANSKKSTAAA 143 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHH
Confidence 466677777777777888888899999999998888877666555555554
No 54
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=30.11 E-value=3.8e+02 Score=25.76 Aligned_cols=90 Identities=21% Similarity=0.201 Sum_probs=50.2
Q ss_pred HhHhHHHHHHHHHHHHHHHHhcCCchhHHHHhhhc-------cCcchHHhhhhhhccchhHhhhhhhhhHhhhhhcccch
Q 021571 185 KQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDE-------VSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKT 257 (310)
Q Consensus 185 kQLKDeVlRIE~dIm~Avakag~~~~~El~kil~e-------vspkn~e~inkll~~kD~eIakLrdeiri~SaHW~~kt 257 (310)
.+|++.|-.|+.--..|. ++.+.|.+ ++|.|.+-+++-=.=-=+||.++..-|.-.+ .--
T Consensus 41 ~~L~~~l~~isn~Ts~~~---------~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~----~~i 107 (411)
T 3ghg_C 41 QSLEDILHQVENKTSEVK---------QLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHD----SSI 107 (411)
T ss_dssp HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
T ss_pred HHHHHHHHHHHhhhhHHH---------HHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhH----HHH
Confidence 356666666655444333 23333333 5666666665543211145555532222111 122
Q ss_pred hHHHHHHHHhHhhHHHHHHhhHHHHHHHHH
Q 021571 258 KELESQLEKQRRADQELKKRVLKLEFCLQE 287 (310)
Q Consensus 258 KELEsQlekqRR~dQElKkrVlkLEfclqE 287 (310)
.+|+++++..+..-++|+..|..|+=..++
T Consensus 108 ~~l~~~~~~~~~~i~~L~~~v~~l~~~~~~ 137 (411)
T 3ghg_C 108 RYLQEIYNSNNQKIVNLKEKVAQLEAQCQE 137 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 578888898888889999999888755444
No 55
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=29.53 E-value=1.6e+02 Score=21.12 Aligned_cols=33 Identities=30% Similarity=0.393 Sum_probs=25.9
Q ss_pred hhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhhh
Q 021571 28 PLLKDLNEKKQSFRKNVVSLAAELKEVRTRLAS 60 (310)
Q Consensus 28 PLLkDL~EKK~sfRRNVvsLaaELKd~R~rLas 60 (310)
.||..|..|...|...|.++.-|++.....+..
T Consensus 6 ~~~~~le~kl~~lEnIv~~l~~eve~~~~~lea 38 (65)
T 3m0d_C 6 KLLAELEGKLRVFENIVAVLNKEVEASHLALAT 38 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 477889999999998888877777777666653
No 56
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=29.08 E-value=32 Score=27.47 Aligned_cols=31 Identities=42% Similarity=0.503 Sum_probs=23.4
Q ss_pred hHhhhhhhhhHhh------hhhcccchhHHHHHHHHh
Q 021571 237 EEIHKLKDEIKIM------SAHWKLKTKELESQLEKQ 267 (310)
Q Consensus 237 ~eIakLrdeiri~------SaHW~~ktKELEsQlekq 267 (310)
+||+.|..+|..| +-.|++|.--|+++|+.-
T Consensus 54 ~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F 90 (96)
T 1t3j_A 54 EEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENF 90 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 5666666666554 668999999999999863
No 57
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=29.02 E-value=2.1e+02 Score=22.54 Aligned_cols=66 Identities=20% Similarity=0.312 Sum_probs=39.8
Q ss_pred ccChhhhhhHHHH----HHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhh
Q 021571 25 EIDPLLKDLNEKK----QSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRL 100 (310)
Q Consensus 25 elDPLLkDL~EKK----~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL 100 (310)
|.|-+..+.+-=| .-|=.-|.+=-+|+-..|+.+-.-|+-.. |.- -.-|+||.+|...|+.++.|+
T Consensus 22 Efe~~~~e~~~~k~q~~~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~------kmK----q~YEeEI~rLr~eLe~r~~q~ 91 (92)
T 3vp9_A 22 EFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYERELTHR------KMK----DAYEEEIKHLKLGLEQRDHQI 91 (92)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH----HHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH----HHHHHHHHHHHHHHHHcCCCC
Confidence 4455555543222 25666677778888888888766665443 111 136999999999999999886
No 58
>3b8o_A Lipopolysaccharide biosynthesis protein WZZE; bacterial polysaccharide CO-polymerase, inner MEM lipopolysaccharide biosynthesis, membrane; 2.40A {Escherichia coli} SCOP: d.58.60.1
Probab=28.88 E-value=35 Score=29.80 Aligned_cols=42 Identities=21% Similarity=0.405 Sum_probs=31.6
Q ss_pred hhhhcccchhHHHHHHHHhH-hhHHHHHHhhHHHHHHHHHHHH
Q 021571 249 MSAHWKLKTKELESQLEKQR-RADQELKKRVLKLEFCLQEARA 290 (310)
Q Consensus 249 ~SaHW~~ktKELEsQlekqR-R~dQElKkrVlkLEfclqEaRs 290 (310)
+..-|..|++.|..|+..++ ++..+...|+.+|+..|+-|.+
T Consensus 141 l~~~~~~r~~~l~~qi~~~~~~ak~~~~~~i~rl~~AL~IA~a 183 (265)
T 3b8o_A 141 LKGAWAARTIQMKAQVKRQEEVAKAIYDRRMNSIEQALKIAEQ 183 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44678899999999999999 8888899999999999999876
No 59
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=28.87 E-value=57 Score=22.97 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=16.8
Q ss_pred hhH-HHHHHhhhchHHHHHHHHHHHh
Q 021571 70 LTR-QEAEMKAKNMEDEICKLQKTLE 94 (310)
Q Consensus 70 ~tR-k~AE~kak~ME~Ei~kLqK~Le 94 (310)
.+| .+||.....+|.+|.+|...|.
T Consensus 4 ~~~aefAERsV~KLek~ID~LEdeL~ 29 (52)
T 2z5i_A 4 LSKNYHLENEVARLKKLVDDLEDELY 29 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445 6777777777777777765554
No 60
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=28.48 E-value=2.7e+02 Score=23.57 Aligned_cols=77 Identities=19% Similarity=0.272 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHHhhhhhhhhH-----HHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhH
Q 021571 43 NVVSLAAELKEVRTRLASQEQC-----FVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGL 117 (310)
Q Consensus 43 NVvsLaaELKd~R~rLasQEq~-----~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~stekyl~eLD~l 117 (310)
+...|..+|-.+|..|.++.-- ..++ ....++..-+..+.|+.+|+..|.+-..+-...-..-.+.=.||++|
T Consensus 14 ~qs~LeD~L~~~R~el~~~~~ri~~lE~~r~--~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeL 91 (154)
T 2ocy_A 14 KQSHLEEQLNKSLKTIASQKAAIENYNQLKE--DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 91 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH--HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666533211 1222 12224445567889999998888776554443334444455899998
Q ss_pred hhhH
Q 021571 118 RSQL 121 (310)
Q Consensus 118 RSQL 121 (310)
=..|
T Consensus 92 TasL 95 (154)
T 2ocy_A 92 TASL 95 (154)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7766
No 61
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=26.47 E-value=2.1e+02 Score=21.72 Aligned_cols=46 Identities=20% Similarity=0.301 Sum_probs=33.0
Q ss_pred HHHhhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhh
Q 021571 75 AEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQ 120 (310)
Q Consensus 75 AE~kak~ME~Ei~kLqK~Leek~~QL~as~~stekyl~eLD~lRSQ 120 (310)
--...-.|..||..|.-.+|+-..+|.--..---.|..+||...++
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~Rl~~ 70 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSLSSG 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445567889999999999988888877666666677788866554
No 62
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=26.42 E-value=1.6e+02 Score=20.94 Aligned_cols=37 Identities=27% Similarity=0.231 Sum_probs=29.6
Q ss_pred HHHHHHhHhhHHHHHHhhHHHHHHHHHHHHhhHHHHH
Q 021571 261 ESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQR 297 (310)
Q Consensus 261 EsQlekqRR~dQElKkrVlkLEfclqEaRsqtrKlQr 297 (310)
|.++..-++.-+-|-+|-.+|.--|++||.|+-+|.-
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lke 44 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALRE 44 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555566677899999999999999999988753
No 63
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=26.03 E-value=48 Score=25.57 Aligned_cols=38 Identities=34% Similarity=0.402 Sum_probs=28.3
Q ss_pred hhhhhhhcchhhhhhHhhhhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHH
Q 021571 147 KELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDI 198 (310)
Q Consensus 147 keL~eK~~sLkEhE~rV~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dI 198 (310)
+.++-=+..|.|-|--+.+|-+|.+. ||+|+-|+|++.
T Consensus 29 k~~~Hl~~LL~EsEatnarL~eq~~l--------------LK~EIRRlERnq 66 (71)
T 3bbp_D 29 KSADHLNGLLRETEATNAILMEQIKL--------------LKSEIRRLERNQ 66 (71)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHH--------------HHHHHHHHHhhH
Confidence 34444566778888888889999875 578888888764
No 64
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=25.91 E-value=3.3e+02 Score=23.68 Aligned_cols=64 Identities=20% Similarity=0.199 Sum_probs=38.3
Q ss_pred hhhhhcchhhhhhHhhhhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHHHHHHHH-hcCCchhHHHHhh--hccCcchH
Q 021571 149 LDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAK-AGVNKDCELRKLL--DEVSPKNF 225 (310)
Q Consensus 149 L~eK~~sLkEhE~rV~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dIm~Avak-ag~~~~~El~kil--~evspkn~ 225 (310)
|.+--.+++=+--++.+|.++|-. .-+.|...|+.||+-... +|-.. .++.+.. ++..|..+
T Consensus 143 l~~~~~~ikl~~k~id~Lv~~lr~--------------~~~~ir~~Er~i~~l~v~~~~mpr-~~fi~~f~g~e~~~~w~ 207 (339)
T 1sig_A 143 LSEVFKQFRLVPKQFDYLVNSMRV--------------MMDRVRTQERLIMKLCVEQCKMPK-KNFITLFTGNETSDTWF 207 (339)
T ss_dssp HHHHHTTEEECHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHTTSCCCH-HHHHHHHTTTCSSGGGT
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHcCCCH-HHHHHHcccccCcHHHH
Confidence 334445556666667777766533 337788999999996644 55444 4666654 34445444
Q ss_pred Hh
Q 021571 226 ER 227 (310)
Q Consensus 226 e~ 227 (310)
+.
T Consensus 208 ~~ 209 (339)
T 1sig_A 208 NA 209 (339)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 65
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=25.75 E-value=41 Score=23.40 Aligned_cols=33 Identities=24% Similarity=0.545 Sum_probs=25.3
Q ss_pred HHHhhhhhhhcchhhhhhHhhhhHHHHHhHHHHHhh
Q 021571 144 ALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQA 179 (310)
Q Consensus 144 ~L~keL~eK~~sLkEhE~rV~~LgEQLD~LQKdLqa 179 (310)
-|+-+|++.... =|.|+..|+..||.|+.-+++
T Consensus 9 dlvsel~~r~e~---LE~Ri~~LE~KLd~L~~~l~a 41 (43)
T 2pnv_A 9 DMISDLNERSED---FEKRIVTLETKLETLIGSIHA 41 (43)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHc
Confidence 455566665544 488999999999999988765
No 66
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=23.67 E-value=3.3e+02 Score=22.90 Aligned_cols=53 Identities=25% Similarity=0.387 Sum_probs=25.1
Q ss_pred HHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhhh----HHHHHHHHhhHhhhHhHHHHhhH
Q 021571 73 QEAEMKAKNMEDEICKLQKTLEERNGRLQASACT----AEKYLMQLDGLRSQLAATKATAD 129 (310)
Q Consensus 73 k~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~s----tekyl~eLD~lRSQLs~tqATAe 129 (310)
..||.|.+.||+|+.-....|.. |.++..- -++|-.++..|..+|--+-.-|+
T Consensus 38 e~aE~k~~eLEeeL~~v~~nlKs----LE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE 94 (155)
T 2efr_A 38 ELSEGKSAELEEELKTVTNNLKS----LEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 94 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc----chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666555433322 2222211 12255555555555554443333
No 67
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=23.56 E-value=52 Score=31.96 Aligned_cols=169 Identities=18% Similarity=0.255 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHH
Q 021571 33 LNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLM 112 (310)
Q Consensus 33 L~EKK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~stekyl~ 112 (310)
|.||...-..--.-|+.+-.+|..-...-+....++...+..-+.+.+.-+.+|.+|...-+.|.. -|++|-.
T Consensus 368 l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~-------e~~~~~~ 440 (575)
T 2i1j_A 368 LEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDS-------ETRRLQE 440 (575)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Q ss_pred HHhhHhhhHhHHHHhhHhhHHhH---------HHHHHHHHH-------------HHhhhhhhhcchhhhhhHhhhhHHHH
Q 021571 113 QLDGLRSQLAATKATADASAASA---------QSAQLQCLA-------------LVKELDEKNSSLKEHEDRVTRLGQQL 170 (310)
Q Consensus 113 eLD~lRSQLs~tqATAeaSaaSA---------qsaqlqCl~-------------L~keL~eK~~sLkEhE~rV~~LgEQL 170 (310)
+|-.-|-.+.-|++---....++ ......=.. ..+.++.....-.+--..-.+|-+||
T Consensus 441 ~~~~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~eR~~~~ekn~~lq~qL 520 (575)
T 2i1j_A 441 EVEDARRKQDEAAAALLAATTPQHHHVAERADTDPDHDNASDAGSESGGGDLARGPDDLVDPVADRRTLAERNERLHNQL 520 (575)
T ss_dssp -CHHHHHHHHHHHHHHHTTSCCGGGSCCCC---------------CEEEEECCCCCTTCCCGGGGCCCHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCcccccccccccccccccccccccccchhhhccccccccchHHHHHHHHhhHHHHHHH
Q ss_pred HhHHHHHhhhhhhHHhHhHHHHHHHHHH--HHHHHHhcCCchhHHHHh
Q 021571 171 DNLQKDLQARESSQKQLKDEVFRIEQDI--MQTIAKAGVNKDCELRKL 216 (310)
Q Consensus 171 D~LQKdLqaRE~SQkQLKDeVlRIE~dI--m~Avakag~~~~~El~ki 216 (310)
.+|..+|. ++|||-....-|| .+-| ++|.+|-.-|++|
T Consensus 521 ~~L~~el~-------~~r~~~k~t~~D~lh~en~-~~GrdKykTLr~i 560 (575)
T 2i1j_A 521 KALKQDLA-------RSCDETKETAMDKIHRENV-RQGRDKYKTLREI 560 (575)
T ss_dssp HHHHHHHH-------TTBCGGGCCHHHHHHHHHH-HTTCCHHHHHHHH
T ss_pred HHHHHHHH-------HHhhhhhcchhHHHHHHhh-hcCchHHHHHHHH
No 68
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=23.27 E-value=2.3e+02 Score=21.46 Aligned_cols=28 Identities=18% Similarity=0.298 Sum_probs=24.1
Q ss_pred HHHhHHHHHHHHHHHHhhhhhhhhHHHH
Q 021571 40 FRKNVVSLAAELKEVRTRLASQEQCFVK 67 (310)
Q Consensus 40 fRRNVvsLaaELKd~R~rLasQEq~~ak 67 (310)
+.+.|--|+.|.-+...+|-.+++-+.+
T Consensus 4 L~k~i~~l~~E~eel~~klk~~~ee~~~ 31 (71)
T 1s1c_X 4 LTKDIEILRRENEELTEKMKKAEEEYKL 31 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888999999999999998887764
No 69
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=23.25 E-value=1.5e+02 Score=25.20 Aligned_cols=19 Identities=21% Similarity=0.330 Sum_probs=9.2
Q ss_pred HHhhhchHHHHHHHHHHHh
Q 021571 76 EMKAKNMEDEICKLQKTLE 94 (310)
Q Consensus 76 E~kak~ME~Ei~kLqK~Le 94 (310)
+.+++.+-.||..|+..|.
T Consensus 112 eakI~aL~~Ei~~Lr~qL~ 130 (175)
T 3lay_A 112 TAKINAVAKEMESLGQKLD 130 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444445555555554443
No 70
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=23.23 E-value=80 Score=26.79 Aligned_cols=44 Identities=32% Similarity=0.512 Sum_probs=36.8
Q ss_pred cCcchHHhhhhhhccchhHhhhhhhhhHhhhhhcccchhHHHHHHHH
Q 021571 220 VSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQLEK 266 (310)
Q Consensus 220 vspkn~e~inkll~~kD~eIakLrdeiri~SaHW~~ktKELEsQlek 266 (310)
.+|+.++.+.+.+..-..++.++.+=|...-++|+ |--|+.|++
T Consensus 51 P~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WK---KiWE~EL~~ 94 (141)
T 3okq_A 51 PAKKKLETVSKDLENAQADVLKLQEFIDTEKPHWK---KTWEAELDK 94 (141)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhH---HHHHHHHHH
Confidence 57888999999999989999999999999999996 445555554
No 71
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=22.91 E-value=2.4e+02 Score=21.43 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=23.8
Q ss_pred HHHhHHHHHHHHHHHHhhhhhhhhHHHH
Q 021571 40 FRKNVVSLAAELKEVRTRLASQEQCFVK 67 (310)
Q Consensus 40 fRRNVvsLaaELKd~R~rLasQEq~~ak 67 (310)
+.+.|--|+.|..+...+|-.+++-+.+
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~ 29 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSR 29 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999887775
No 72
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=22.35 E-value=4.2e+02 Score=23.65 Aligned_cols=58 Identities=22% Similarity=0.361 Sum_probs=28.3
Q ss_pred HHHHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhc----chhhhhhHhhhhHHHHHhHHH
Q 021571 111 LMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNS----SLKEHEDRVTRLGQQLDNLQK 175 (310)
Q Consensus 111 l~eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~keL~eK~~----sLkEhE~rV~~LgEQLD~LQK 175 (310)
-+.||+.+--+.-.. +.|+.| -+....|-.-|+.|.+ -.+|-|-.|+.+.+||.++.-
T Consensus 403 ~~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (471)
T 3mq9_A 403 QQELTEAQKGFQDVE--AQAATA-----NHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASA 464 (471)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHH--HHhhhc-----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666665554332 222222 2233333333433332 355666667777777666543
No 73
>3teq_A Stromal interaction molecule 1; signaling protein; 1.90A {Homo sapiens}
Probab=22.28 E-value=1.1e+02 Score=24.61 Aligned_cols=39 Identities=23% Similarity=0.375 Sum_probs=33.3
Q ss_pred hhcccchhHHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHhhHHHHHH
Q 021571 251 AHWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRV 298 (310)
Q Consensus 251 aHW~~ktKELEsQlekqRR~dQElKkrVlkLEfclqEaRsqtrKlQr~ 298 (310)
.+|--.|=|+|.|.=..+|.+-|.+ +++||....||.+.
T Consensus 5 q~wLq~T~e~E~q~~~~kk~~aekq---------l~~A~e~~eKl~KK 43 (101)
T 3teq_A 5 QKWLQLTHEVEVQYYNIKKQNAEKQ---------LMVAKEGAEKIKKK 43 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHH
T ss_pred HHHHhHhhHHHHHHHHHhhccHHHH---------HHHHHHHHHHHHHh
Confidence 4799999999999999999888765 57899999999875
No 74
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=22.19 E-value=19 Score=33.91 Aligned_cols=34 Identities=32% Similarity=0.370 Sum_probs=0.0
Q ss_pred CCCCCCCCccccCCCCCCCCCCccccChhhhhhH
Q 021571 1 MSASGHRSSMSTSSSSSSSSVPAREIDPLLKDLN 34 (310)
Q Consensus 1 ~~~~~~~~~~~~~~~~~sss~~~~elDPLLkDL~ 34 (310)
|.+--||-+.+.|.|++.||.+..||-|+-|--.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (467)
T 2j63_A 21 MASKRCRQCSGDSASSSTSSLSPSELPPSKKAAG 54 (467)
T ss_dssp ----------------------------------
T ss_pred hhhhhhhhccCCcccccccCCCccccCccccccC
Confidence 4455678777777788888889999999866443
No 75
>2nox_A Tryptophan 2,3-dioxygenase; helical bundle, heme protein, oxidoreductase; HET: HEM; 2.40A {Cupriavidus metallidurans}
Probab=22.14 E-value=3.7e+02 Score=24.24 Aligned_cols=121 Identities=21% Similarity=0.260 Sum_probs=70.1
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhhHhHHHH
Q 021571 47 LAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKA 126 (310)
Q Consensus 47 LaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~stekyl~eLD~lRSQLs~tqA 126 (310)
+.-||..|+..|..-+..-+ -.+=.-|.+.++.|.+--.=| .+++.+.|+ .+|..|.
T Consensus 64 il~El~~a~~~l~~~~~~~a-------------~~~L~Rv~~i~~~L~~~~~vL--~tMtp~dF~----~FR~~Lg---- 120 (281)
T 2nox_A 64 MLHELRAARDGVKSDQLQPA-------------FKMLARVSRIMDQLVQAWNVL--ATMTPPEYS----AMRPYLG---- 120 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHH-------------HHHHHHHHHHHHHHHHTHHHH--TTCCHHHHH----HHGGGTT----
T ss_pred HHHHHHHHHHHHhCCCHHHH-------------HHHHHHHHHHHHHHHHHHHHH--cCCCHHHHH----HHHHhcC----
Confidence 45677788777764332211 122234667777777766666 678899998 4677665
Q ss_pred hhHhhHHhHHHHHHHHHHHHhhhhhhhc-chhhhhhHhhhhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHHHHHHHHh
Q 021571 127 TADASAASAQSAQLQCLALVKELDEKNS-SLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKA 205 (310)
Q Consensus 127 TAeaSaaSAqsaqlqCl~L~keL~eK~~-sLkEhE~rV~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dIm~Avaka 205 (310)
.||. .||+|..++..+=+. |+. .++-|+. -.+ +...|++. ....-|.|+|++ .+++.
T Consensus 121 --~aSG--FQS~qyR~iE~~lG~--k~~~~l~~~~~----~p~----~~~~l~~~-~~~pSL~d~~~~-------~L~r~ 178 (281)
T 2nox_A 121 --ASSG--FQSYQYREIEFILGN--KNAAMLRPHAH----RPE----HLELVETA-LHTPSMYDEAIR-------LMARR 178 (281)
T ss_dssp --TCCG--GGCHHHHHHHHHTTC--CCGGGGGGGTT----CHH----HHHHHHHH-HHSCCHHHHHHH-------HHHHT
T ss_pred --Ccch--hhHHHHHHHHHHhCC--CcHHHhccccc----CHH----HHHHHHHH-hcCCCHHHHHHH-------HHHHc
Confidence 4454 499999999876552 332 3343431 222 23333333 333457788765 35567
Q ss_pred cCCchhH
Q 021571 206 GVNKDCE 212 (310)
Q Consensus 206 g~~~~~E 212 (310)
|.....+
T Consensus 179 G~~~~~~ 185 (281)
T 2nox_A 179 GFQIDPE 185 (281)
T ss_dssp TCCCCHH
T ss_pred CCCCchh
Confidence 7766543
No 76
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=21.91 E-value=1.9e+02 Score=23.13 Aligned_cols=47 Identities=17% Similarity=0.282 Sum_probs=32.0
Q ss_pred HHHhhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhhH
Q 021571 75 AEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQL 121 (310)
Q Consensus 75 AE~kak~ME~Ei~kLqK~Leek~~QL~as~~stekyl~eLD~lRSQL 121 (310)
++...+..+.|+.+|+..|.+...+-...-..-.+.-.||++|=..|
T Consensus 17 le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 17 LKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444458889999999888776655444444455668898886665
No 77
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=20.52 E-value=1.3e+02 Score=25.09 Aligned_cols=50 Identities=22% Similarity=0.383 Sum_probs=0.0
Q ss_pred HHhhhhhhccchhH----hhhhhhhhHhhhhhcccchhHHHHHHHHhHhhHHHHHHhh
Q 021571 225 FERINKLLVVKDEE----IHKLKDEIKIMSAHWKLKTKELESQLEKQRRADQELKKRV 278 (310)
Q Consensus 225 ~e~inkll~~kD~e----IakLrdeiri~SaHW~~ktKELEsQlekqRR~dQElKkrV 278 (310)
+..++.-|..+-.. |..|++||+.+-. +-.+.+-.+|..|+.-+++.-|+
T Consensus 55 V~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq----~Lq~a~ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 55 VMALMASLDAEKAQGQKKVEELEGEITTLNH----KLQDASAEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhchhhhhHh
No 78
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=20.40 E-value=4.1e+02 Score=22.84 Aligned_cols=101 Identities=13% Similarity=0.218 Sum_probs=0.0
Q ss_pred cChhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHH---HHhhhhhhhhh
Q 021571 26 IDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQK---TLEERNGRLQA 102 (310)
Q Consensus 26 lDPLLkDL~EKK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK---~Leek~~QL~a 102 (310)
++-.++||.++-..+..+-.+|-.|+-.+.+.|..--....+-+++-.+.+.|...++.|+.++.- .++.-+.+|.-
T Consensus 46 ~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~E 125 (168)
T 3o0z_A 46 LESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQD 125 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhHHHHHHHHh-hHhhhHhHHHH
Q 021571 103 SACTAEKYLMQLD-GLRSQLAATKA 126 (310)
Q Consensus 103 s~~stekyl~eLD-~lRSQLs~tqA 126 (310)
-.++-||.-.-++ ||-=.|-+.|.
T Consensus 126 kl~~lEKe~a~~eid~~~eLKalQ~ 150 (168)
T 3o0z_A 126 MLNHSEKEKNNLEIDLNYKLKSLQQ 150 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
No 79
>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein, RNA protein, DNA binding protein; 2.20A {Homo sapiens} SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A
Probab=20.39 E-value=3e+02 Score=23.95 Aligned_cols=36 Identities=22% Similarity=0.336 Sum_probs=27.0
Q ss_pred hHHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHHHHHHHHh
Q 021571 166 LGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKA 205 (310)
Q Consensus 166 LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dIm~Avaka 205 (310)
+-...+.++..|.++. +.|+++..|=+||+..-.++
T Consensus 15 ~~~~f~~~~~~Ld~~~----d~REriik~sRdI~~~Sk~~ 50 (240)
T 1j1j_A 15 VSEIFVELQGFLAAEQ----DIREEIRKVVQSLEQTAREI 50 (240)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 3445677777777654 67899999999999886665
No 80
>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=20.35 E-value=67 Score=28.40 Aligned_cols=25 Identities=12% Similarity=0.356 Sum_probs=22.7
Q ss_pred chhhhhhHhhhhHHHHHhHHHHHhh
Q 021571 155 SLKEHEDRVTRLGQQLDNLQKDLQA 179 (310)
Q Consensus 155 sLkEhE~rV~~LgEQLD~LQKdLqa 179 (310)
++.+++.||++|.++|+.|++-+..
T Consensus 5 ~~~~~~~r~~~l~~~~~~l~~~~~~ 29 (217)
T 2gtl_M 5 LVKNQNLHIDYLAKKLHDIEEEYNK 29 (217)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ehhhhHHHHHHHHHHHHHHHHHHhh
Confidence 4678999999999999999999974
No 81
>2lic_A Vitellogenin; lipid transport; HET: SEP; NMR {Apis mellifera}
Probab=20.17 E-value=47 Score=22.48 Aligned_cols=15 Identities=67% Similarity=0.570 Sum_probs=7.8
Q ss_pred CCCccccCCCCCCCC
Q 021571 6 HRSSMSTSSSSSSSS 20 (310)
Q Consensus 6 ~~~~~~~~~~~~sss 20 (310)
-|...|||||+-|||
T Consensus 10 lrtdistssssisss 24 (35)
T 2lic_A 10 LRTDISTSSSSISSS 24 (35)
T ss_dssp CSSSSCSCSSCCSTT
T ss_pred hhhcccccccccccc
Confidence 355556655544443
No 82
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=20.07 E-value=2e+02 Score=26.68 Aligned_cols=46 Identities=17% Similarity=0.214 Sum_probs=25.6
Q ss_pred HHhhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhhH
Q 021571 76 EMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQL 121 (310)
Q Consensus 76 E~kak~ME~Ei~kLqK~Leek~~QL~as~~stekyl~eLD~lRSQL 121 (310)
+.+...++.+|..++.++++-+++|...-.---++.+++.+|+..+
T Consensus 16 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnI 61 (403)
T 4etp_A 16 KEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNI 61 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 3334455556666666666666665555444445566666665444
Done!