Query 021571
Match_columns 310
No_of_seqs 20 out of 22
Neff 2.0
Searched_HMMs 13730
Date Mon Mar 25 06:04:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021571.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021571hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1icha_ a.77.1.2 (A:) Tumor ne 61.4 2.9 0.00021 28.7 3.1 35 211-245 2-36 (87)
2 d1wjta_ a.48.3.1 (A:) Transcri 36.6 18 0.0013 26.4 4.0 59 186-245 9-77 (103)
3 d3efza1 a.118.7.1 (A:46-268) 1 35.5 5.4 0.0004 33.2 1.1 42 196-251 1-42 (223)
4 d2efla1 a.238.1.4 (A:1-288) Fo 35.2 81 0.0059 23.4 20.2 57 73-129 107-163 (288)
5 d1gs9a_ a.24.1.1 (A:) Apolipop 30.8 51 0.0037 24.0 5.9 24 80-103 81-104 (144)
6 d1hcia1 a.7.1.1 (A:272-396) al 25.2 96 0.007 22.4 6.6 82 110-194 38-125 (125)
7 d1cuna2 a.7.1.1 (A:116-219) Sp 24.8 51 0.0037 21.6 4.5 16 109-124 1-16 (104)
8 d2efka1 a.238.1.4 (A:10-288) C 23.9 1.3E+02 0.0094 22.1 20.7 53 73-125 98-150 (279)
9 d1w85a_ c.36.1.11 (A:) Pyruvat 23.0 47 0.0034 28.4 5.0 52 170-221 293-345 (365)
10 d1umda_ c.36.1.11 (A:) Branche 21.0 39 0.0028 28.8 4.0 51 170-220 292-343 (362)
11 d2p90a1 c.56.8.1 (A:6-274) Hyp 20.4 49 0.0035 26.3 4.3 46 225-282 213-258 (269)
No 1
>d1icha_ a.77.1.2 (A:) Tumor necrosis factor receptor-1 death domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=61.37 E-value=2.9 Score=28.68 Aligned_cols=35 Identities=26% Similarity=0.433 Sum_probs=31.1
Q ss_pred hHHHHhhhccCcchHHhhhhhhccchhHhhhhhhh
Q 021571 211 CELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDE 245 (310)
Q Consensus 211 ~El~kil~evspkn~e~inkll~~kD~eIakLrde 245 (310)
.||..|-++|+|.++..+-.-|.+.+.+|..+..+
T Consensus 2 ~~l~~va~~v~~~~Wk~lar~LGls~~~i~~I~~~ 36 (87)
T d1icha_ 2 ATLYAVVENVPPLRWKEFVKRLGLSDHEIDRLELQ 36 (87)
T ss_dssp HHHHHHHHHSCSTTHHHHHHHHTCCHHHHHHHHHH
T ss_pred hHHHHHHHHCChHHHHHHHHHhCcCHHHHHHHHHH
Confidence 47889999999999999999999999999876543
No 2
>d1wjta_ a.48.3.1 (A:) Transcription elongation factor S-II protein 3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=36.59 E-value=18 Score=26.43 Aligned_cols=59 Identities=19% Similarity=0.329 Sum_probs=42.8
Q ss_pred hHhHHHHHHHHHHHHHHHHhcCCchhHHHHhhhccCcchHHh---------hhhhhc-cchhHhhhhhhh
Q 021571 186 QLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFER---------INKLLV-VKDEEIHKLKDE 245 (310)
Q Consensus 186 QLKDeVlRIE~dIm~Avakag~~~~~El~kil~evspkn~e~---------inkll~-~kD~eIakLrde 245 (310)
-+.|||.+|-..|.+++...-...-.++++.|+.+++ +++- +|+|.- ..|++|..+-.+
T Consensus 9 ~~eeei~~i~k~L~~~~~~~~~~~vl~~L~~L~~~~i-t~e~L~~T~IGk~Vn~LrK~~~~~~v~~lAk~ 77 (103)
T d1wjta_ 9 GLEEELLRIAKKLEKMVSRKKTEGALDLLKKLNSCQM-SIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKV 77 (103)
T ss_dssp CSHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHTSCC-CHHHHHHTCHHHHHHHHHHHCCCSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHcCCC-CHHHHHhCCccHhHHHHHccCCCHHHHHHHHH
Confidence 3568999999999999976666677899999988766 5553 466554 346677666444
No 3
>d3efza1 a.118.7.1 (A:46-268) 14-3-3 protein cgd1_2980 {Cryptosporidium parvum [TaxId: 5807]}
Probab=35.55 E-value=5.4 Score=33.18 Aligned_cols=42 Identities=19% Similarity=0.358 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhhccchhHhhhhhhhhHhhhh
Q 021571 196 QDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSA 251 (310)
Q Consensus 196 ~dIm~Avakag~~~~~El~kil~evspkn~e~inkll~~kD~eIakLrdeiri~Sa 251 (310)
.|+|.++...|..-++|.|++|+ |.=||. |...|.-+||++.
T Consensus 1 ~d~~k~~~e~~~~~~~eeRnLLs-vayKn~-------------ig~rR~s~R~i~s 42 (223)
T d3efza1 1 KDVIKVLTESSDFRDNSLILLLA-GSLRNR-------------VTSIRNSLKSIKS 42 (223)
T ss_dssp CHHHHHHTC-----CCHHHHHHH-HHHHHH-------------HHHHHHHHHHHHH
T ss_pred CcHHHHHHHcCCccchHHHHHHH-HHHhhh-------------ccchHHHHHHHHH
Confidence 38999999999999999999887 444543 6788999999986
No 4
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.21 E-value=81 Score=23.36 Aligned_cols=57 Identities=19% Similarity=0.119 Sum_probs=44.0
Q ss_pred HHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhhHhHHHHhhH
Q 021571 73 QEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATAD 129 (310)
Q Consensus 73 k~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~stekyl~eLD~lRSQLs~tqATAe 129 (310)
+..+...|.+.+++.++++.+.+....+..+-..-.+-.+|++.++.++...+.-..
T Consensus 107 ~~~~~~~K~~~~~~~k~~k~~~~~~~~l~k~k~~Y~~~~~e~e~~~~~~~~~~~~~~ 163 (288)
T d2efla1 107 QELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADIN 163 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 456677788999999999999998888887776666666888888888776554333
No 5
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=30.78 E-value=51 Score=23.97 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=12.7
Q ss_pred hchHHHHHHHHHHHhhhhhhhhhh
Q 021571 80 KNMEDEICKLQKTLEERNGRLQAS 103 (310)
Q Consensus 80 k~ME~Ei~kLqK~Leek~~QL~as 103 (310)
..++..+..++..|+..-+++++-
T Consensus 81 ~~l~~~lee~r~kl~~~~eel~~~ 104 (144)
T d1gs9a_ 81 ARLGADMEDVRGRLVQYRGEVQAM 104 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555443
No 6
>d1hcia1 a.7.1.1 (A:272-396) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.24 E-value=96 Score=22.39 Aligned_cols=82 Identities=12% Similarity=0.103 Sum_probs=54.8
Q ss_pred HHHHHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhcchh------hhhhHhhhhHHHHHhHHHHHhhhhhh
Q 021571 110 YLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLK------EHEDRVTRLGQQLDNLQKDLQARESS 183 (310)
Q Consensus 110 yl~eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~keL~eK~~sLk------EhE~rV~~LgEQLD~LQKdLqaRE~S 183 (310)
|-+-+.+++.+|..-..--...-.....-.-.+..+.+.|..|-.+.. ...+.+..|..--+.|++-...|+..
T Consensus 38 f~~t~~~iq~~l~~f~~yr~~ekp~~~~Ek~~l~~l~~~lqt~~~~~n~~~~~P~~gl~~~di~~~W~~L~~ae~~Re~~ 117 (125)
T d1hcia1 38 PEKTMQAMQKKLEDFRDYRRKHKPPKVQEKCQLEINFNTLQTKLRISNRPAFMPSEGKMVSDIAGAWQRLEQAEKGYEEW 117 (125)
T ss_dssp CCSSSTTTTHHHHHHHHHHHHTHHHHHHHHHHTTTHHHHTTTTTTTTTSCCCCCCGGGCSSSHHHHHHHHHHHHTTHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777655443333223333344455677777777666654 34688889999999999999999864
Q ss_pred HHhHhHHHHHH
Q 021571 184 QKQLKDEVFRI 194 (310)
Q Consensus 184 QkQLKDeVlRI 194 (310)
|++|+.|+
T Consensus 118 ---L~~El~Rl 125 (125)
T d1hcia1 118 ---LLNEIRRL 125 (125)
T ss_dssp ---HHHHHHHH
T ss_pred ---HHHHHhcC
Confidence 88888875
No 7
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=24.77 E-value=51 Score=21.61 Aligned_cols=16 Identities=0% Similarity=0.225 Sum_probs=8.4
Q ss_pred HHHHHHhhHhhhHhHH
Q 021571 109 KYLMQLDGLRSQLAAT 124 (310)
Q Consensus 109 kyl~eLD~lRSQLs~t 124 (310)
||..+++++-+-|.-+
T Consensus 1 qF~~~~~e~~~Wl~e~ 16 (104)
T d1cuna2 1 QFVANVEEEEAWINEK 16 (104)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4555555555555443
No 8
>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.91 E-value=1.3e+02 Score=22.10 Aligned_cols=53 Identities=19% Similarity=0.075 Sum_probs=39.7
Q ss_pred HHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhhHhHHH
Q 021571 73 QEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATK 125 (310)
Q Consensus 73 k~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~stekyl~eLD~lRSQLs~tq 125 (310)
+..+...|.+.+++.++++.+.+....+.-+-..-.+-..+++.++..+..+.
T Consensus 98 ~~~~~~~k~~~~~~~~~~k~l~~~~~~~~k~k~~y~~~~~e~e~~~~~~~~~~ 150 (279)
T d2efka1 98 QEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAERLD 150 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55667778889999999999998888777776666666677777776655443
No 9
>d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]}
Probab=23.02 E-value=47 Score=28.44 Aligned_cols=52 Identities=19% Similarity=0.252 Sum_probs=39.9
Q ss_pred HHhHHHHHhhhhh-hHHhHhHHHHHHHHHHHHHHHHhcCCchhHHHHhhhccC
Q 021571 170 LDNLQKDLQARES-SQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVS 221 (310)
Q Consensus 170 LD~LQKdLqaRE~-SQkQLKDeVlRIE~dIm~Avakag~~~~~El~kil~evs 221 (310)
|..+.++|..+.. |+.++++--..|+..|-+|+.+|........-.++++|=
T Consensus 293 I~~~~~~L~~~g~~~~~el~~i~~e~~~eV~~A~~~A~~sP~P~~~~l~~~Vy 345 (365)
T d1w85a_ 293 LVRFRKFLEAKGLWSEEEENNVIEQAKEEIKEAIKKADETPKQKVTDLISIMF 345 (365)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHTSCCCCHHHHHHTSC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhhc
Confidence 3444555555554 888888888889999999999999888888877777773
No 10
>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]}
Probab=21.03 E-value=39 Score=28.83 Aligned_cols=51 Identities=14% Similarity=0.184 Sum_probs=36.1
Q ss_pred HHhHHHHHhhhhh-hHHhHhHHHHHHHHHHHHHHHHhcCCchhHHHHhhhcc
Q 021571 170 LDNLQKDLQARES-SQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEV 220 (310)
Q Consensus 170 LD~LQKdLqaRE~-SQkQLKDeVlRIE~dIm~Avakag~~~~~El~kil~ev 220 (310)
|..+.++|..+.. |..++++--..|...|-+|+.+|-.......-.++++|
T Consensus 292 i~~~~~~L~~~g~~se~e~~~i~~ei~~~V~~a~~~A~~~p~P~~~~l~~~V 343 (362)
T d1umda_ 292 IPRFRRFLEARGLWNEEWEEDVREEIRAELERGLKEAEEAGPVPPEWMFEDV 343 (362)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCBCCGGGGGTTS
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhcc
Confidence 4455666666665 88888888888888999999988765555555555555
No 11
>d2p90a1 c.56.8.1 (A:6-274) Hypothetical protein Cgl1923 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=20.41 E-value=49 Score=26.26 Aligned_cols=46 Identities=20% Similarity=0.260 Sum_probs=33.5
Q ss_pred HHhhhhhhccchhHhhhhhhhhHhhhhhcccchhHHHHHHHHhHhhHHHHHHhhHHHH
Q 021571 225 FERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQLEKQRRADQELKKRVLKLE 282 (310)
Q Consensus 225 ~e~inkll~~kD~eIakLrdeiri~SaHW~~ktKELEsQlekqRR~dQElKkrVlkLE 282 (310)
.+.||+++.++= .+..|.++. .+.|.+++++...++|+++=|-+||
T Consensus 213 L~~l~~~~gl~i-d~~~L~e~A-----------e~~e~~i~~l~e~~~e~~~~v~~LE 258 (269)
T d2p90a1 213 LQSIADSADLNL-PLLALERDA-----------EKVHRQLMEQTEESSEIQRVVGALE 258 (269)
T ss_dssp HHHHHHHHTCCC-CCHHHHHHH-----------HHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCC-ChHHHHHHH-----------HHHHHHHHHHHhhCHHHHHHHHHHH
Confidence 356677776653 455555543 4567888888889999999999998
Done!