BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>021572
MSTALYIIKSPPVPALWFPHSLQKTPKFEFPIFRNPNISNSTSNCNSSKMLLLHRANAAP
SLQVAVSEAMNLVQLSQPTWQSALLSNVVIFVLGSPILVSGLSPSGIAAAFLLGTLTWRA
FGPSGFLLVATYFIIGTAATKVKMAQKEAQGVAEKRKGRRGPGSVIGSSAAGCVCAFLSI
FGVGGFEFSRLWQLGFVASFCTKLSDTVSSEIGKAYGKTTYLVTTFKVVPRGTEGAVSVE
GTFAGIFASILLAWVGCLTGQVSLIIVSFHLFSDFTHALMLFTSMFSYFFLYALICLFTS
TLNKLFSLPL

High Scoring Gene Products

Symbol, full name Information P value
AT1G78620 protein from Arabidopsis thaliana 1.3e-77
MGG_00802
Uncharacterized protein
protein from Magnaporthe oryzae 70-15 3.1e-07
TMEM19
Transmembrane protein 19
protein from Bos taurus 1.2e-05
TMEM19
Transmembrane protein 19
protein from Homo sapiens 9.8e-05
tmem19
transmembrane protein 19
gene_product from Danio rerio 0.00026
TMEM19
Uncharacterized protein
protein from Canis lupus familiaris 0.00037
DDB_G0287439
Transmembrane protein 19
gene from Dictyostelium discoideum 0.00047
TMEM19
Uncharacterized protein
protein from Sus scrofa 0.00061

The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  021572
        (310 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2202955 - symbol:AT1G78620 species:3702 "Arabi...   781  1.3e-77   1
UNIPROTKB|G4NEB5 - symbol:MGG_00802 "Uncharacterized prot...   107  3.1e-07   2
UNIPROTKB|A7E3R1 - symbol:TMEM19 "Uncharacterized protein...   128  1.2e-05   1
UNIPROTKB|Q96HH6 - symbol:TMEM19 "Transmembrane protein 1...   120  9.8e-05   1
ZFIN|ZDB-GENE-040625-78 - symbol:tmem19 "transmembrane pr...   116  0.00026   1
UNIPROTKB|F1PGI2 - symbol:TMEM19 "Uncharacterized protein...   114  0.00037   1
DICTYBASE|DDB_G0287439 - symbol:DDB_G0287439 "Transmembra...   113  0.00047   1
UNIPROTKB|F1SH34 - symbol:TMEM19 "Uncharacterized protein...   113  0.00061   1
TAIR|locus:2147705 - symbol:AT5G19930 species:3702 "Arabi...   110  0.00098   1


>TAIR|locus:2202955 [details] [associations]
            symbol:AT1G78620 species:3702 "Arabidopsis thaliana"
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0016021 "integral
            to membrane" evidence=IEA] [GO:0009706 "chloroplast inner membrane"
            evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0048767 "root hair elongation" evidence=RCA] [GO:0009536
            "plastid" evidence=IDA] InterPro:IPR002794 Pfam:PF01940
            GO:GO:0016021 EMBL:CP002684 GO:GO:0009706 PANTHER:PTHR13353
            IPI:IPI00534708 RefSeq:NP_974171.1 UniGene:At.19165 PRIDE:F4IBS8
            EnsemblPlants:AT1G78620.2 GeneID:844198 KEGG:ath:AT1G78620
            OMA:VTRIGMA Uniprot:F4IBS8
        Length = 342

 Score = 781 (280.0 bits), Expect = 1.3e-77, P = 1.3e-77
 Identities = 155/215 (72%), Positives = 183/215 (85%)

Query:    58 AAPSLQVAVSEAMNLVQLSQPTWQSALLSNVVIFVLGSPILVSGLSPSGIAAAFLLGTLT 117
             AA S++  ++EAM L+Q + PTW+SA+ +N++IFVLGSP+LV+GLS SGIAAAFLLGTLT
Sbjct:    64 AAASMEGVMTEAMKLIQSASPTWKSAVANNLLIFVLGSPLLVTGLSASGIAAAFLLGTLT 123

Query:   118 WRAFGPSGFLLVATYFII---------GTAATKVKMAQKEAQGVAEKRKGRRGPGSVIGS 168
             WRA+G +GFLLVA YF+I         GTAATKVKM QKEAQGVAEKRKGRRGP SVIGS
Sbjct:   124 WRAYGSAGFLLVAAYFVIVSAFVINLNGTAATKVKMTQKEAQGVAEKRKGRRGPRSVIGS 183

Query:   169 SAAGCVCAFLSIFGVGGFEFSRLWQLGFVASFCTKLSDTVSSEIGKAYGKTTYLVTTFKV 228
             SAAGCVCAFLSI+ VGG  FS+L++LGFV+SFCTK+SDTVSSEIGKAYGKTTYL TTFK+
Sbjct:   184 SAAGCVCAFLSIYQVGGAAFSQLFRLGFVSSFCTKVSDTVSSEIGKAYGKTTYLATTFKI 243

Query:   229 VPRGTEGAVSVEGTFAGIFASILLAWVGCLTGQVS 263
             VPRGTEGA+S+EGT AG+ AS  LA VGC  GQ++
Sbjct:   244 VPRGTEGAMSLEGTLAGLLASFFLASVGCFLGQIT 278


>UNIPROTKB|G4NEB5 [details] [associations]
            symbol:MGG_00802 "Uncharacterized protein" species:242507
            "Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
            evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR002794
            Pfam:PF01940 GO:GO:0016021 EMBL:CM001235 PANTHER:PTHR13353
            RefSeq:XP_003718182.1 EnsemblFungi:MGG_00802T0 GeneID:2675202
            KEGG:mgr:MGG_00802 Uniprot:G4NEB5
        Length = 376

 Score = 107 (42.7 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
 Identities = 24/64 (37%), Positives = 37/64 (57%)

Query:   191 LWQLGFVASFCTKLSDTVSSEIGKAYGKTTYLVT--TFKVVPRGTEGAVSVEGTFAGIFA 248
             L  +G +A++    +DT SSE+G     T  L+T  T + VPRGT G V+  G  AG+  
Sbjct:   135 LLPIGIIANYAAMAADTFSSELGILSSATPRLITSPTLRKVPRGTNGGVTALGLGAGLLG 194

Query:   249 SILL 252
             S+++
Sbjct:   195 SMVV 198

 Score = 78 (32.5 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
 Identities = 27/84 (32%), Positives = 39/84 (46%)

Query:   100 SGLSPSGIAAAFLLGTLTWRAFGPSG--FLLVATYFIIGTAATKVKMAQKEAQGVAEK-R 156
             + L+P+GIAAA    +    A  P    F L+  +F+ GT  TK+K   K    V  +  
Sbjct:    21 NSLTPAGIAAA--AASAIAHAVHPWNLPFALLVVFFLAGTRVTKIKKDVKANMTVGSQGT 78

Query:   157 KGRRGPGSVIGSSAAGCVCAFLSI 180
              G  GP + I   A   V + LS+
Sbjct:    79 SGGEGPRTHIQVLANSLVASVLSL 102


>UNIPROTKB|A7E3R1 [details] [associations]
            symbol:TMEM19 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0016021 "integral to membrane" evidence=IEA]
            InterPro:IPR002794 Pfam:PF01940 GO:GO:0016021 CTD:55266
            eggNOG:NOG129154 HOGENOM:HOG000167218 HOVERGEN:HBG057658
            OMA:LDNHSVN OrthoDB:EOG41RPVK PANTHER:PTHR13353
            GeneTree:ENSGT00390000017998 EMBL:DAAA02012289 EMBL:BT030682
            IPI:IPI00698373 RefSeq:NP_001094654.1 UniGene:Bt.103316
            Ensembl:ENSBTAT00000016277 GeneID:538974 KEGG:bta:538974
            InParanoid:A7E3R1 NextBio:20877702 Uniprot:A7E3R1
        Length = 336

 Score = 128 (50.1 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 54/196 (27%), Positives = 83/196 (42%)

Query:    77 QPT--WQSALLSNVVIFVLGSPILVSGLSPSGIAAAFLLG-TLTWRAFGPSGFLLVATYF 133
             QP   W+      V + ++ +      L  SG     ++G  LT   F  S F  + T+F
Sbjct:    47 QPVSPWRWLFSVVVTVLIVSNGFKKKSLDHSGALGGLVVGFILTIANF--SFFTSLVTFF 104

Query:   134 IIGTAATKVKMAQKEAQGVAEKRKGRRGPGSVIGSSAAGCVCAFLSIFGVG-G---FEFS 189
             +  +  TK K   K+      K  G+R    V  + A     A L +   G G    +FS
Sbjct:   105 LSSSKLTKWKGEAKKHLDSEYKEGGQRNWIQVFCNGAVPTELALLYMIESGPGEIPIDFS 164

Query:   190 RL----WQ-LGFVASFCTKLSDTVSSEIGKAYGKTT-YLVTTFKVVPRGTEGAVSVEGTF 243
             R     W  L  +A+  +   DT +SE+G    K+T  L+TT++ VP GT G V+V G  
Sbjct:   165 RQHTASWMCLSLLAALASSAGDTWASEVGPVLSKSTPRLITTWEKVPVGTNGGVTVVGLA 224

Query:   244 AGIFASILLAWVGCLT 259
             + +     +     LT
Sbjct:   225 SSLLGGTFVGITYFLT 240


>UNIPROTKB|Q96HH6 [details] [associations]
            symbol:TMEM19 "Transmembrane protein 19" species:9606 "Homo
            sapiens" [GO:0016021 "integral to membrane" evidence=IEA]
            InterPro:IPR002794 Pfam:PF01940 GO:GO:0016021 EMBL:CH471054
            EMBL:AK001798 EMBL:AK223148 EMBL:AK315587 EMBL:BC008596
            IPI:IPI00153036 IPI:IPI00749138 RefSeq:NP_060749.2
            UniGene:Hs.644802 ProteinModelPortal:Q96HH6 IntAct:Q96HH6
            MINT:MINT-1452520 STRING:Q96HH6 PhosphoSite:Q96HH6 DMDM:74731932
            PRIDE:Q96HH6 Ensembl:ENST00000266673 Ensembl:ENST00000547816
            Ensembl:ENST00000549735 GeneID:55266 KEGG:hsa:55266 UCSC:uc001swr.1
            UCSC:uc001sws.3 CTD:55266 GeneCards:GC12P072079 HGNC:HGNC:25605
            HPA:HPA016830 neXtProt:NX_Q96HH6 PharmGKB:PA134909388
            eggNOG:NOG129154 HOGENOM:HOG000167218 HOVERGEN:HBG057658
            InParanoid:Q96HH6 OMA:LDNHSVN OrthoDB:EOG41RPVK GenomeRNAi:55266
            NextBio:59368 ArrayExpress:Q96HH6 Bgee:Q96HH6 CleanEx:HS_TMEM19
            Genevestigator:Q96HH6 PANTHER:PTHR13353 Uniprot:Q96HH6
        Length = 336

 Score = 120 (47.3 bits), Expect = 9.8e-05, P = 9.8e-05
 Identities = 57/210 (27%), Positives = 89/210 (42%)

Query:    71 NLVQLSQPTWQSALLSNVV-IFVLGSPILVSGLSPSGIAAAFLLG-TLTWRAFGPSGFLL 128
             NL  +S   W   L S VV + ++ + +    L  SG     ++G  LT   F  S F  
Sbjct:    45 NLRPISPWRW---LFSVVVPVLIVSNGLKKKSLDHSGALGGLVVGFILTIANF--SFFTS 99

Query:   129 VATYFIIGTAATKVKMAQKEAQGVAEKRKGRRGPGSVIGSSAAGCVCAFLSIF--GVGGF 186
             +  +F+  +  TK K   K+      K  G+R    V  + A     A L +   G G  
Sbjct:   100 LLMFFLSSSKLTKWKGEVKKRLDSEYKEGGQRNWVQVFCNGAVPTELALLYMIENGPGEI 159

Query:   187 ------EFSRLWQ-LGFVASFCTKLSDTVSSEIGKAYGKTT-YLVTTFKVVPRGTEGAVS 238
                   ++S  W  L  +A+      DT +SE+G    K++  L+TT++ VP GT G V+
Sbjct:   160 PVDFSKQYSASWMCLSLLAALACSAGDTWASEVGPVLSKSSPRLITTWEKVPVGTNGGVT 219

Query:   239 VEGTFAGIFASILLAWVGCLTGQVSLIIVS 268
             V G  + +       +VG       LI V+
Sbjct:   220 VVGLVSSLLGG---TFVGIAYFLTQLIFVN 246


>ZFIN|ZDB-GENE-040625-78 [details] [associations]
            symbol:tmem19 "transmembrane protein 19"
            species:7955 "Danio rerio" [GO:0016021 "integral to membrane"
            evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
            [GO:0003674 "molecular_function" evidence=ND] InterPro:IPR002794
            Pfam:PF01940 ZFIN:ZDB-GENE-040625-78 GO:GO:0016021 CTD:55266
            HOGENOM:HOG000167218 HOVERGEN:HBG057658 OrthoDB:EOG41RPVK
            PANTHER:PTHR13353 eggNOG:COG1836 EMBL:BC071522 IPI:IPI00503031
            RefSeq:NP_001002098.1 UniGene:Dr.151550 GeneID:415188
            KEGG:dre:415188 InParanoid:Q6IQ88 NextBio:20818858 Bgee:Q6IQ88
            Uniprot:Q6IQ88
        Length = 322

 Score = 116 (45.9 bits), Expect = 0.00026, P = 0.00026
 Identities = 52/200 (26%), Positives = 79/200 (39%)

Query:    62 LQVAVSEAMNLVQLSQPTWQSALLSNVVIFVLGSPILVSGLSPSGIAAAFLLGTLTWRAF 121
             L +  S     +Q   P W+      + +F+         L   G   A L+G +   A 
Sbjct:    21 LSLTASTYYGTLQPVSP-WRWLFSVLIPLFITFRASKRKSLDHGGAIGAMLVGFVLTMA- 78

Query:   122 GPSGFLLVATYFIIGTAATKVKMAQKEAQGVAEKRKGRRGPGSVIGSSAAGCVCAFLSIF 181
               S F ++ T+FI  T  T+ K   K+      K  G+R    V  +       A L + 
Sbjct:    79 NMSFFAVLLTFFITSTKLTRWKGEIKKKIDPEYKEGGQRNWLQVFCNGGVPTELALLYMI 138

Query:   182 GVGGFE--------FSRLWQ-LGFVASFCTKLSDTVSSEIGKAYGKTT-YLVTTFKVVPR 231
               G  E        +S  W  L  + +      DT +SE+G    K+   L+TT++ VP 
Sbjct:   139 EAGPGEMAIDFAKQYSASWMCLSLLGALACSTGDTWASEVGPVLSKSKPKLITTWRDVPT 198

Query:   232 GTEGAVSVEGTFAGIFASIL 251
             GT G V    T  G+ AS+L
Sbjct:   199 GTNGGV----TSVGLLASVL 214


>UNIPROTKB|F1PGI2 [details] [associations]
            symbol:TMEM19 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0016021 "integral to membrane" evidence=IEA]
            InterPro:IPR002794 Pfam:PF01940 GO:GO:0016021 OMA:LDNHSVN
            PANTHER:PTHR13353 GeneTree:ENSGT00390000017998 EMBL:AAEX03007067
            Ensembl:ENSCAFT00000000731 Uniprot:F1PGI2
        Length = 297

 Score = 114 (45.2 bits), Expect = 0.00037, P = 0.00037
 Identities = 55/201 (27%), Positives = 84/201 (41%)

Query:    71 NLVQLSQPTWQSALLSNVV-IFVLGSPILVSGLSPSGIAAAFLLG-TLTWRAFGPSGFLL 128
             NL  +S   W   L S VV + ++ +      L  SG     ++G  LT   F  S F  
Sbjct:     6 NLQPISPWRW---LFSVVVPVLIVSNGFKKKSLDHSGALGGLVVGFILTIANF--SFFTS 60

Query:   129 VATYFIIGTAATKVKMAQKEAQGVAEKRKGRRGPGSVIGSSAAGCVCAFLSIF--GVGGF 186
             +  +F+  +  TK K   K+      K  G+R    V  + A     A L +   G G  
Sbjct:    61 LLMFFLSSSKLTKWKGEIKKRLDSEYKEGGQRNWVQVFCNGAVPTELALLYMIENGPGEI 120

Query:   187 --EFSRL----WQ-LGFVASFCTKLSDTVSSEIGKAYGKTT-YLVTTFKVVPRGTEGAVS 238
               +FS+     W  L  +A+      DT +SE+G    K+   L+TT++ VP GT G V+
Sbjct:   121 PIDFSKQYTASWMCLSLLAALACSAGDTWASEVGPVLSKSPPRLITTWEKVPVGTNGGVT 180

Query:   239 VEGTFAGIFASILLAWVGCLT 259
             V G  + +     +     LT
Sbjct:   181 VVGLVSSLLGGTFVGITYFLT 201


>DICTYBASE|DDB_G0287439 [details] [associations]
            symbol:DDB_G0287439 "Transmembrane protein 19"
            species:44689 "Dictyostelium discoideum" [GO:0016021 "integral to
            membrane" evidence=IEA] [GO:0044351 "macropinocytosis"
            evidence=RCA] InterPro:IPR002794 Pfam:PF01940
            dictyBase:DDB_G0287439 GO:GO:0016021 EMBL:AAFI02000100
            eggNOG:NOG129154 OMA:LDNHSVN PANTHER:PTHR13353 RefSeq:XP_637245.1
            EnsemblProtists:DDB0219223 GeneID:8626076 KEGG:ddi:DDB_G0287439
            InParanoid:Q54KH8 ProtClustDB:CLSZ2728869 Uniprot:Q54KH8
        Length = 295

 Score = 113 (44.8 bits), Expect = 0.00047, P = 0.00047
 Identities = 44/154 (28%), Positives = 66/154 (42%)

Query:   102 LSPSGIAAAFLLGTLTWRAFGPSGFLLVATYFIIGTAATKVKMAQKEAQGVAEKRKGRRG 161
             L+ SG   A+L G  T   FG +   L+ +++   +  TK K + K+         G+R 
Sbjct:    30 LNQSGTITAWLTGVSTC-IFGSTFATLLLSFYFSSSYLTKYKSSIKKTIEDGHTAGGQRN 88

Query:   162 PGSVIGSSAAGCVCA----FLS-----IFGVGGFEFSRLWQLGFVASFCTKLSDTVSSEI 212
                V+ +S  G + A    F S     +       FS      F+  +     DT +SE+
Sbjct:    89 YIQVLSNSLPGTIFAAIFYFFSKSSNTLINFNNDFFSSFIICCFIGHYSCCNGDTWASEL 148

Query:   213 GKAYGKTTYLVTTFKVVPRGTEGAVSVEGTFAGI 246
             G        L+TTFK VP+GT G +S  G  A I
Sbjct:   149 GILSKGEPILITTFKKVPKGTNGGLSPLGIGASI 182


>UNIPROTKB|F1SH34 [details] [associations]
            symbol:TMEM19 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0016021 "integral to membrane" evidence=IEA]
            InterPro:IPR002794 Pfam:PF01940 GO:GO:0016021 OMA:LDNHSVN
            PANTHER:PTHR13353 GeneTree:ENSGT00390000017998 EMBL:CU695170
            Ensembl:ENSSSCT00000000549 Uniprot:F1SH34
        Length = 336

 Score = 113 (44.8 bits), Expect = 0.00061, P = 0.00061
 Identities = 52/183 (28%), Positives = 80/183 (43%)

Query:    71 NLVQLSQPTWQSALLSNVV-IFVLGSPILVSGLSPSGIAAAFLLG-TLTWRAFGPSGFLL 128
             NL  +S   W   L S VV + ++ +      L  SG     ++G  LT   F  S F  
Sbjct:    45 NLQPISPWRW---LFSVVVPVLIISNGFKKKSLDHSGAIGGLVVGFILTIANF--SFFTS 99

Query:   129 VATYFIIGTAATKVKMAQKEAQGVAEKRKGRRGPGSVIGSSAAGCVCAFLSIF--GVGGF 186
             +  +F+  +  TK K   K+      K  G+R    V  + A     A L +   G G  
Sbjct:   100 LLMFFLSSSKLTKWKGEAKKRLDSEYKEGGQRNWIQVFCNGAVPTELALLYMIENGPGEI 159

Query:   187 --EFSRL----WQ-LGFVASFCTKLSDTVSSEIGKAYGKTT-YLVTTFKVVPRGTEGAVS 238
               +FS+     W  L  +A+  +   DT +SE+G    K+   L+TT++ VP GT G V+
Sbjct:   160 PIDFSKQHTASWMCLSLLAALASSAGDTWASEVGTVLSKSPPRLITTWEKVPVGTNGGVT 219

Query:   239 VEG 241
             + G
Sbjct:   220 MVG 222


>TAIR|locus:2147705 [details] [associations]
            symbol:AT5G19930 species:3702 "Arabidopsis thaliana"
            [GO:0016021 "integral to membrane" evidence=IEA] InterPro:IPR002794
            Pfam:PF01940 GO:GO:0016021 EMBL:CP002688 GenomeReviews:BA000015_GR
            HOGENOM:HOG000167218 OMA:LDNHSVN PANTHER:PTHR13353 eggNOG:COG1836
            EMBL:AK229183 IPI:IPI00540509 RefSeq:NP_001190343.1
            RefSeq:NP_568386.1 UniGene:At.19835 EnsemblPlants:AT5G19930.1
            EnsemblPlants:AT5G19930.2 GeneID:832115 KEGG:ath:AT5G19930
            TAIR:At5g19930 InParanoid:Q0WP96 PhylomeDB:Q0WP96
            ProtClustDB:CLSN2689807 Genevestigator:Q0WP96 Uniprot:Q0WP96
        Length = 288

 Score = 110 (43.8 bits), Expect = 0.00098, P = 0.00098
 Identities = 45/156 (28%), Positives = 69/156 (44%)

Query:   102 LSPSGIAAAFLLGTLTWRAFGPSGFLLVATYFIIGTAATKVKMAQKEAQGVAEKRKGRRG 161
             L  SG  A FL+ T+ + A    G LL+  +F+  +  TKV   +K    V  K  G+R 
Sbjct:    29 LDLSGGIAGFLVMTIHFTAGFRYGALLLV-FFLTSSKLTKVGEDKKRRVDVEFKEGGQRN 87

Query:   162 PGSVIGSSAAGCVCAFLSIFGVGGFEF---SRLWQL------GFVASFCTKLSDTVSSEI 212
                V+ +S    V   ++    G  +    S+  ++      G +  +     DT SSE+
Sbjct:    88 WVQVLCNSGIASVLVVIACTLTGWKDKCLDSKQSEIVTALIGGIIGHYACCNGDTWSSEL 147

Query:   213 GKAYGKTTYLVTTFKVVPRGTEGAVSVEGTFAGIFA 248
             G        L+TTFK V +GT G V+  G  A + A
Sbjct:   148 GVLSDAQPRLITTFKPVKKGTNGGVTKAGLLAALAA 183


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.138   0.418    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      310       296   0.00093  115 3  11 22  0.43    33
                                                     33  0.44    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  577 (61 KB)
  Total size of DFA:  183 KB (2105 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.74u 0.10s 22.84t   Elapsed:  00:00:01
  Total cpu time:  22.74u 0.10s 22.84t   Elapsed:  00:00:01
  Start:  Mon May 20 21:37:10 2013   End:  Mon May 20 21:37:11 2013

Back to top