Query 021572
Match_columns 310
No_of_seqs 176 out of 419
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 04:02:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021572.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021572hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00297 conserved hypothetic 100.0 8.8E-60 1.9E-64 434.4 20.7 202 79-307 3-204 (237)
2 PF01940 DUF92: Integral membr 100.0 1E-58 2.2E-63 424.7 20.0 193 91-307 7-199 (226)
3 COG1836 Predicted membrane pro 100.0 4.3E-53 9.3E-58 389.4 19.8 205 79-290 12-216 (247)
4 KOG4491 Predicted membrane pro 100.0 9.6E-50 2.1E-54 369.0 13.0 215 79-308 41-267 (323)
5 PF01148 CTP_transf_1: Cytidyl 95.8 0.042 9.1E-07 49.2 8.0 56 195-259 132-187 (259)
6 COG0170 SEC59 Dolichol kinase 92.6 1.6 3.4E-05 40.3 10.9 55 193-257 114-168 (216)
7 COG0575 CdsA CDP-diglyceride s 87.7 5.4 0.00012 37.5 10.1 59 193-259 134-192 (265)
8 PLN02953 phosphatidate cytidyl 65.2 1.7E+02 0.0038 30.1 15.9 51 197-256 273-323 (403)
9 PF12188 STAT2_C: Signal trans 58.8 4.1 9E-05 30.8 0.6 41 11-53 2-43 (56)
10 PRK11624 cdsA CDP-diglyceride 58.5 62 0.0013 31.1 8.7 50 200-257 159-208 (285)
11 PRK10484 putative transporter; 47.1 1E+02 0.0022 31.5 8.7 25 94-118 422-446 (523)
12 PF11014 DUF2852: Protein of u 44.4 48 0.001 28.5 4.9 37 104-144 8-44 (115)
13 PRK12488 acetate permease; Pro 44.3 1E+02 0.0022 32.1 8.1 24 94-117 448-471 (549)
14 KOG0424 Ubiquitin-protein liga 43.4 43 0.00094 30.2 4.6 59 18-78 64-125 (158)
15 PRK09395 actP acetate permease 42.9 79 0.0017 32.7 7.1 25 94-118 450-474 (551)
16 KOG2468 Dolichol kinase [Lipid 41.0 18 0.00039 37.8 2.1 52 193-255 410-461 (510)
17 COG1585 Membrane protein impli 39.4 83 0.0018 27.4 5.7 36 102-140 27-62 (140)
18 PF01102 Glycophorin_A: Glycop 39.3 27 0.00058 30.2 2.6 25 106-134 64-88 (122)
19 PF06324 Pigment_DH: Pigment-d 39.2 15 0.00031 22.2 0.7 10 300-309 3-12 (18)
20 PRK04032 hypothetical protein; 38.2 1E+02 0.0023 27.8 6.2 24 233-256 33-56 (159)
21 COG4854 Predicted membrane pro 36.3 1.6E+02 0.0034 25.8 6.7 69 104-173 9-83 (126)
22 PLN02594 phosphatidate cytidyl 35.1 1.7E+02 0.0036 29.6 7.7 50 198-256 130-179 (342)
23 PF08570 DUF1761: Protein of u 32.6 2.1E+02 0.0046 23.7 7.0 14 143-156 24-37 (126)
24 COG3167 PilO Tfp pilus assembl 29.5 33 0.00071 32.2 1.7 32 207-242 152-187 (211)
25 COG3030 FxsA Protein affecting 29.0 1.8E+02 0.004 26.2 6.3 53 126-179 33-85 (158)
26 KOG2881 Predicted membrane pro 28.3 1.4E+02 0.0029 29.6 5.7 61 76-145 82-153 (294)
27 PRK10263 DNA translocase FtsK; 27.9 1.1E+03 0.024 28.2 13.9 31 103-134 62-92 (1355)
28 PF10031 DUF2273: Small integr 27.5 1.3E+02 0.0027 22.2 4.2 39 104-143 11-49 (51)
29 PRK15419 proline:sodium sympor 26.3 3.2E+02 0.0069 27.9 8.2 24 95-118 418-441 (502)
30 PF11992 DUF3488: Domain of un 26.0 6.1E+02 0.013 24.5 10.2 19 158-176 98-116 (325)
31 TIGR02711 symport_actP cation/ 24.1 2.3E+02 0.0051 29.4 7.0 23 95-117 449-471 (549)
32 TIGR03648 Na_symport_lg probab 23.5 2.7E+02 0.0059 28.8 7.3 25 94-118 458-482 (552)
33 TIGR02121 Na_Pro_sym sodium/pr 23.2 4.4E+02 0.0095 26.7 8.5 24 95-118 411-434 (487)
34 PRK14416 membrane protein; Pro 22.2 3.6E+02 0.0079 25.2 7.1 60 96-156 127-190 (200)
35 COG1950 Predicted membrane pro 22.1 3.8E+02 0.0083 23.4 6.7 74 236-309 24-115 (120)
36 PTZ00390 ubiquitin-conjugating 22.1 1.3E+02 0.0028 26.3 4.0 58 17-78 56-116 (152)
37 PF03323 GerA: Bacillus/Clostr 21.8 2E+02 0.0044 29.7 5.9 28 239-266 348-375 (470)
38 PF00950 ABC-3: ABC 3 transpor 21.8 2.4E+02 0.0053 26.6 6.1 53 95-147 26-79 (257)
39 PF11166 DUF2951: Protein of u 21.7 1E+02 0.0023 25.9 3.1 22 239-260 76-97 (98)
40 TIGR02865 spore_II_E stage II 21.4 7.1E+02 0.015 27.4 10.1 37 107-143 43-80 (764)
41 PRK13592 ubiA prenyltransferas 20.0 8.6E+02 0.019 24.1 9.8 28 139-167 186-214 (299)
No 1
>TIGR00297 conserved hypothetical protein TIGR00297.
Probab=100.00 E-value=8.8e-60 Score=434.39 Aligned_cols=202 Identities=37% Similarity=0.606 Sum_probs=178.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHhhchhhHHHHHHHHhhhhhhhhcchhhhhhhhhhhhccC
Q 021572 79 TWQSALLSNVVIFVLGSPILVSGLSPSGIAAAFLLGTLTWRAFGPSGFLLVATYFIIGTAATKVKMAQKEAQGVAEKRKG 158 (310)
Q Consensus 79 ~w~~a~~~n~~l~~~~~~~~~ksLT~sGa~aA~lvG~l~~~~~G~~g~llLl~FFlssS~~TK~k~~~K~~~~~~ekkgG 158 (310)
+|.++++++.+ +...+||+|+||++|+++|+++|++++...|++|+.+++.||++||++||+|+++|++++++|||+|
T Consensus 3 ~~~~a~~~~~~--l~~~~~~~~~L~~sG~~~a~~vG~~~~~~~g~~~~~~ll~Ff~~sS~~Tk~~~~~K~~~~~~e~~gg 80 (237)
T TIGR00297 3 LWLSAVILCVF--LLALAAYAPLLDPWGYGHAWIMGVIIILFAGFRGLLVILAFFFLGSAVTRYGQEEKKAAGIAEKRSG 80 (237)
T ss_pred HHHHHHHHHHH--HHHHHHHHccCCHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHhccHHHHHhcccccccCC
Confidence 59999999876 5566799999999999999999999988899999999999999999999999999999999999999
Q ss_pred ccCcccccccchHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHhhchhhhhhhhcccCCCceEeeCCeecCCCCCcccc
Q 021572 159 RRGPGSVIGSSAAGCVCAFLSIFGVGGFEFSRLWQLGFVASFCTKLSDTVSSEIGKAYGKTTYLVTTFKVVPRGTEGAVS 238 (310)
Q Consensus 159 ~R~~~QVlaNg~~a~l~All~~~~~~~~~~~~~~~lafvas~Aaa~ADTwASEIG~ls~~~PrLITT~K~VppGTnGGVS 238 (310)
+||++||++||+++++|+++|.+.+. .+..+.++|++++||++|||||||||++|+++||+||||||||||||||||
T Consensus 81 ~R~~~qVlaNg~~~~~~al~~~~~~~---~~~~~~~~f~~s~A~a~aDT~ASEiG~ls~~~p~lItt~k~V~~GT~GgVS 157 (237)
T TIGR00297 81 QRGPKNVWGNGLTPALFALAIAFGPE---WDLWLALGYVASVATALSDTMASEIGKAYGKNPRLITTLQRVEPGTDGAIS 157 (237)
T ss_pred CCCHHHHHHhhHHHHHHHHHHHhccc---chHHHHHHHHHHHHHHHcchHHHhhhhccCCCCeEeecCccCCCCCCCccc
Confidence 99999999999999999999877543 256778999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 021572 239 VEGTFAGIFASILLAWVGCLTGQVSLIIVSFHLFSDFTHALMLFTSMFSYFFLYALICLFTSTLNKLFS 307 (310)
Q Consensus 239 llGtlAsllGa~~Ia~va~llg~~~~~~~~~~~~~~~g~~g~lfdSvl~~~~~~~~aGl~GSllDSll~ 307 (310)
++||+|+++|+++|+..+++++..+... +++..++|++||++||+||
T Consensus 158 ~~Gt~As~~Ga~~I~~~~~~~~~~~~~~----------------------~~~~~~aG~~Gsl~DSlLG 204 (237)
T TIGR00297 158 VEGTLAGFAGALAIALLGYLLGLISFKG----------------------ILFSTLAAFAGTNLDSLLG 204 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchHH----------------------HHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999988887655322 3344556666666666655
No 2
>PF01940 DUF92: Integral membrane protein DUF92; InterPro: IPR002794 Many members of this family have no known function and are predicted to be integral membrane proteins.; GO: 0016021 integral to membrane
Probab=100.00 E-value=1e-58 Score=424.70 Aligned_cols=193 Identities=37% Similarity=0.468 Sum_probs=172.9
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHHhhchhhHHHHHHHHhhhhhhhhcchhhhhhhhhhhhccCccCcccccccch
Q 021572 91 FVLGSPILVSGLSPSGIAAAFLLGTLTWRAFGPSGFLLVATYFIIGTAATKVKMAQKEAQGVAEKRKGRRGPGSVIGSSA 170 (310)
Q Consensus 91 ~~~~~~~~~ksLT~sGa~aA~lvG~l~~~~~G~~g~llLl~FFlssS~~TK~k~~~K~~~~~~ekkgG~R~~~QVlaNg~ 170 (310)
+++..+||+|+||++|+++|+++|++++...||+++++++.||++||++||+|+++|++++++|+|+|+||++||+|||+
T Consensus 7 ~l~~~a~~~k~Lt~sGa~aa~~vG~~~~~~~g~~~~~~L~~FF~~ss~~Tk~~~~~K~~~~~~~~~~g~R~~~QVlaNg~ 86 (226)
T PF01940_consen 7 LLAILAYKKKSLTLSGALAAFLVGTLIYGFGGWPWFLLLLAFFISSSLATKYKKERKEKLGEAEKKGGRRDWWQVLANGG 86 (226)
T ss_pred HHHHHHHHHCCCCHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCChHHHHHhcccccCCCCCChHHhhhccH
Confidence 46668899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHhhchhhhhhhhcccCCCceEeeCCeecCCCCCcccchhHHHHHHHHHH
Q 021572 171 AGCVCAFLSIFGVGGFEFSRLWQLGFVASFCTKLSDTVSSEIGKAYGKTTYLVTTFKVVPRGTEGAVSVEGTFAGIFASI 250 (310)
Q Consensus 171 ~a~l~All~~~~~~~~~~~~~~~lafvas~Aaa~ADTwASEIG~ls~~~PrLITT~K~VppGTnGGVSllGtlAsllGa~ 250 (310)
++++|+++|.+.+ +..++.+.++|++++||++|||||||||++|+++||+||||||||||||||||++||+|+++|++
T Consensus 87 ~a~~~al~~~~~~--~~~~~~~~~~~~~s~A~a~aDTwASEiG~ls~~~P~lItt~k~V~~Gt~GgVS~lGt~as~~Ga~ 164 (226)
T PF01940_consen 87 VAALCALLYAFFP--STPAPLLLLAFLGSIAAANADTWASEIGVLSKGPPRLITTFKRVPPGTSGGVSLLGTLASLAGAL 164 (226)
T ss_pred HHHHHHHHHHHhc--ccchHHHHHHHHHHHHHHhhhHHHHhhhhhcCCCCeEeeCCcCCCCCCCCeechHHHHHHHHHHH
Confidence 9999999988754 12367899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcchhhHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 021572 251 LLAWVGCLTGQVSLIIVSFHLFSDFTHALMLFTSMFSYFFLYALICLFTSTLNKLFS 307 (310)
Q Consensus 251 ~Ia~va~llg~~~~~~~~~~~~~~~g~~g~lfdSvl~~~~~~~~aGl~GSllDSll~ 307 (310)
+|++++++++..+... +.+..++|++||++||+||
T Consensus 165 ~Ia~~~~~~~~~~~~~----------------------~~~~~~~G~~Gsl~DSlLG 199 (226)
T PF01940_consen 165 LIALVAFLLGLISFPL----------------------VLLIALAGFLGSLLDSLLG 199 (226)
T ss_pred HHHHHHHHHHccchHH----------------------HHHHHHHHHHHHHHHHHhh
Confidence 9999999987544333 2233566666666666665
No 3
>COG1836 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=4.3e-53 Score=389.40 Aligned_cols=205 Identities=36% Similarity=0.404 Sum_probs=186.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHhhchhhHHHHHHHHhhhhhhhhcchhhhhhhhhhhhccC
Q 021572 79 TWQSALLSNVVIFVLGSPILVSGLSPSGIAAAFLLGTLTWRAFGPSGFLLVATYFIIGTAATKVKMAQKEAQGVAEKRKG 158 (310)
Q Consensus 79 ~w~~a~~~n~~l~~~~~~~~~ksLT~sGa~aA~lvG~l~~~~~G~~g~llLl~FFlssS~~TK~k~~~K~~~~~~ekkgG 158 (310)
+|+.+++++.. +..++||+|.||++|.++|+++|.+++...||+|+++++.||++||.+||+|+++|++++.+|+|+|
T Consensus 12 ~~l~all~~~~--L~~la~~~k~Ld~~G~~~A~~lG~~i~~~~g~~~fllll~Ff~~g~l~Tk~~~~~K~~~gvaE~~~g 89 (247)
T COG1836 12 PLLLALLLILF--LGALAYKAKALDLSGSLSAILLGALIIVFGGFKWFLLLLIFFALGSLATKYKYEEKEALGVAEGRDG 89 (247)
T ss_pred HHHHHHHHHHH--HHHHHHHhccCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccc
Confidence 59999999876 5567799999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccccccchHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHhhchhhhhhhhcccCCCceEeeCCeecCCCCCcccc
Q 021572 159 RRGPGSVIGSSAAGCVCAFLSIFGVGGFEFSRLWQLGFVASFCTKLSDTVSSEIGKAYGKTTYLVTTFKVVPRGTEGAVS 238 (310)
Q Consensus 159 ~R~~~QVlaNg~~a~l~All~~~~~~~~~~~~~~~lafvas~Aaa~ADTwASEIG~ls~~~PrLITT~K~VppGTnGGVS 238 (310)
.|+.+||++|++++.+|+++|...+++ +.++..+|++|+|+++|||||||||+.++++|||||||||||||||||||
T Consensus 90 ~R~~~NV~gn~l~~~l~av~~~~~~~~---~~~~~~~~~~SvAta~aDT~ASEiG~~~~~~p~lITtfkrV~~Gt~GaVS 166 (247)
T COG1836 90 ARSLENVLGNGLAALLFAVLYAIYPDP---QLWFLGGFAASVATANADTLASEIGKAYGKRPRLITTFKRVEPGTSGAVS 166 (247)
T ss_pred cccHHHHhhccHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHHHhhhHHHHHHhHhhCCCeEEEEeeeEcCCCCCCccc
Confidence 999999999999999999998654332 45788999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHhhhhhhhhhHHHHHHHHHHH
Q 021572 239 VEGTFAGIFASILLAWVGCLTGQVSLIIVSFHLFSDFTHALMLFTSMFSYFF 290 (310)
Q Consensus 239 llGtlAsllGa~~Ia~va~llg~~~~~~~~~~~~~~~g~~g~lfdSvl~~~~ 290 (310)
++||+|+++|+++|++++++++..+...+. +.+..|+.|..+||++|.++
T Consensus 167 ~~GelAav~Ga~iIal~~~l~~~~~~~~v~--~vtlaGf~G~~iDSllGAtl 216 (247)
T COG1836 167 LVGELAAVAGAFIIALLSYLVGYISLGGVL--SVTLAGFAGTNIDSLLGATL 216 (247)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhcccchhH--HHHHHHHHhhhHHHHhhHHH
Confidence 999999999999999999999888544432 35777788999999888754
No 4
>KOG4491 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=9.6e-50 Score=368.96 Aligned_cols=215 Identities=21% Similarity=0.265 Sum_probs=183.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHhhchhhHHHHHHHHhhhhhhhhcchhhhhhhhhhhhcc-
Q 021572 79 TWQSALLSNVVIFVLGSPILVSGLSPSGIAAAFLLGTLTWRAFGPSGFLLVATYFIIGTAATKVKMAQKEAQGVAEKRK- 157 (310)
Q Consensus 79 ~w~~a~~~n~~l~~~~~~~~~ksLT~sGa~aA~lvG~l~~~~~G~~g~llLl~FFlssS~~TK~k~~~K~~~~~~ekkg- 157 (310)
+|+.++++..+ +...+||+|+||.||++++++||++.-. ...+.|..|++||++||.+||+|++.|++.+.+|+|+
T Consensus 41 RwlFsvvvp~l--i~~~~lkrkSld~SGa~~G~lV~filtI-a~h~ff~sl~~fF~sss~~tkfr~~~k~r~~s~~~eg~ 117 (323)
T KOG4491|consen 41 RWLFSVVVPVL--IVSNGLKRKSLDHSGALGGLLVGFILTI-ANHSFFTSLLMFFLSSSKLTKFRGEVKKRLDSEYKEGL 117 (323)
T ss_pred HHHHHHHHHHH--HHHHHHhhcccccccchhHHHHHHHHHH-hcchhHHHHHHHHHccchhhhHHHHHHHHHHHHHhhcc
Confidence 99999999876 5567799999999999999999997432 3455789999999999999999999999999888876
Q ss_pred CccCcccccccchHHHHHHHHHHHhcCCcc---------hhHHHHHHHHHHHHHhhchhhhhhhh-cccCCCceEeeCCe
Q 021572 158 GRRGPGSVIGSSAAGCVCAFLSIFGVGGFE---------FSRLWQLGFVASFCTKLSDTVSSEIG-KAYGKTTYLVTTFK 227 (310)
Q Consensus 158 G~R~~~QVlaNg~~a~l~All~~~~~~~~~---------~~~~~~lafvas~Aaa~ADTwASEIG-~ls~~~PrLITT~K 227 (310)
|||+|.||+|||+++...+++|....++.. ...++.++.++++|||++|||+||+| ++|++.||+|||||
T Consensus 118 GQRNWvQVlCNggva~~Lally~~~~G~ge~~vDf~~~y~~swl~~~~~~a~ACcnGDTWsSElG~VLS~~~PrlItTw~ 197 (323)
T KOG4491|consen 118 GQRNWVQVLCNGGVATELALLYMIENGPGEIPVDFSKQYSASWLCLSLLAALACCNGDTWSSELGPVLSKSSPRLITTWE 197 (323)
T ss_pred CccchhhhhcCCcchHHHHHHHHHhcCCCccccchHHHHHHHHHHHHHHHHHHhcCCChhhhhhcchhccCCCceEEeee
Confidence 999999999999999999999987765421 23456789999999999999999999 89999999999999
Q ss_pred ecCCCCCcccchhHHHHHHHHHHHHHHHHHHhhcchhhH-HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 021572 228 VVPRGTEGAVSVEGTFAGIFASILLAWVGCLTGQVSLII-VSFHLFSDFTHALMLFTSMFSYFFLYALICLFTSTLNKLF 306 (310)
Q Consensus 228 ~VppGTnGGVSllGtlAsllGa~~Ia~va~llg~~~~~~-~~~~~~~~~g~~g~lfdSvl~~~~~~~~aGl~GSllDSll 306 (310)
|||+|||||||..|.+++++|+.++++-.++.+++...- ..+. .. .|+++.||++||||||++||+|
T Consensus 198 ~Vp~GTNGGVt~~Gl~~sLlgGt~VG~~yf~t~l~tv~c~ldis-~p-----------QwpiIafgglAGL~GSlvDS~L 265 (323)
T KOG4491|consen 198 KVPVGTNGGVTVVGLVSSLLGGTFVGIAYFLTQLITVNCDLDIS-AP-----------QWPIIAFGGLAGLLGSLVDSYL 265 (323)
T ss_pred ecccCCCCCEeeHHHHHHHhccceeehHhhhhhhheeecccccC-cc-----------cCcEeehhhHHHHHHHHHHHHh
Confidence 999999999999999999999999988776665543221 1111 22 3689999999999999999999
Q ss_pred CC
Q 021572 307 SL 308 (310)
Q Consensus 307 ~~ 308 (310)
|-
T Consensus 266 Ga 267 (323)
T KOG4491|consen 266 GA 267 (323)
T ss_pred hh
Confidence 84
No 5
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=95.81 E-value=0.042 Score=49.22 Aligned_cols=56 Identities=16% Similarity=0.354 Sum_probs=42.1
Q ss_pred HHHHHHHHhhchhhhhhhhcccCCCceEeeCCeecCCCCCcccchhHHHHHHHHHHHHHHHHHHh
Q 021572 195 GFVASFCTKLSDTVSSEIGKAYGKTTYLVTTFKVVPRGTEGAVSVEGTFAGIFASILLAWVGCLT 259 (310)
Q Consensus 195 afvas~Aaa~ADTwASEIG~ls~~~PrLITT~K~VppGTnGGVSllGtlAsllGa~~Ia~va~ll 259 (310)
.+.+-...+.+|++|+=+|+.+||++ .|-.+..=|+||++++++++++++.+.+..
T Consensus 132 ~~~~i~~~~~gD~~A~l~G~~fGk~~---------~~~~sp~KT~EGsi~~~i~~~i~~~~~~~~ 187 (259)
T PF01148_consen 132 ALIGILILGIGDSFAYLVGRRFGKHL---------APKISPKKTWEGSIAGFISSFIISFLLLYY 187 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCc---------CCCCCCCCCHHHHhHHHHHHHHHHHHHHHH
Confidence 34556777889999999999999871 112333349999999999999997765443
No 6
>COG0170 SEC59 Dolichol kinase [Lipid metabolism]
Probab=92.62 E-value=1.6 Score=40.32 Aligned_cols=55 Identities=31% Similarity=0.423 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhhchhhhhhhhcccCCCceEeeCCeecCCCCCcccchhHHHHHHHHHHHHHHHHH
Q 021572 193 QLGFVASFCTKLSDTVSSEIGKAYGKTTYLVTTFKVVPRGTEGAVSVEGTFAGIFASILLAWVGC 257 (310)
Q Consensus 193 ~lafvas~Aaa~ADTwASEIG~ls~~~PrLITT~K~VppGTnGGVSllGtlAsllGa~~Ia~va~ 257 (310)
-.+.++=++.+.+|+.||=+|+.++++++-.-+-| |++|++|.++.++++..+.+
T Consensus 114 ~~~~~~I~~l~~GD~lAsiiG~~~G~~~~~~~~~K----------SleGSla~fi~~~l~~~~~~ 168 (216)
T COG0170 114 EVAIAGILVLALGDGLASIIGKRYGRHKRILGNGK----------SLEGSLAFFIASFLVLLVLY 168 (216)
T ss_pred HHHHHHHHHHHHhhHHHHHhCcccCccccccCCCC----------chhhhHHHHHHHHHHHHHHH
Confidence 45566668888999999999999998744444445 89999999999999876443
No 7
>COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism]
Probab=87.66 E-value=5.4 Score=37.55 Aligned_cols=59 Identities=17% Similarity=0.208 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhhchhhhhhhhcccCCCceEeeCCeecCCCCCcccchhHHHHHHHHHHHHHHHHHHh
Q 021572 193 QLGFVASFCTKLSDTVSSEIGKAYGKTTYLVTTFKVVPRGTEGAVSVEGTFAGIFASILLAWVGCLT 259 (310)
Q Consensus 193 ~lafvas~Aaa~ADTwASEIG~ls~~~PrLITT~K~VppGTnGGVSllGtlAsllGa~~Ia~va~ll 259 (310)
...+......-.+|+.|+=+|+..||+| -.|-.|-.-|+||.+.|++++.+++......
T Consensus 134 ~~~l~l~~~vw~~Di~Ayf~Gr~fGk~k--------l~p~iSP~KT~eGfigG~~~~~~v~~~~~~~ 192 (265)
T COG0575 134 ILLLLLFLGVWAGDIGAYFVGRRFGKHK--------LAPKISPKKTWEGFIGGALGAVLVAVLVIFL 192 (265)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHcCCCC--------CCCcCCCCCchHHhHHHHHHHHHHHHHHHHH
Confidence 3445555667779999999999999987 2345666789999999999998887765443
No 8
>PLN02953 phosphatidate cytidylyltransferase
Probab=65.19 E-value=1.7e+02 Score=30.13 Aligned_cols=51 Identities=27% Similarity=0.360 Sum_probs=38.6
Q ss_pred HHHHHHhhchhhhhhhhcccCCCceEeeCCeecCCCCCcccchhHHHHHHHHHHHHHHHH
Q 021572 197 VASFCTKLSDTVSSEIGKAYGKTTYLVTTFKVVPRGTEGAVSVEGTFAGIFASILLAWVG 256 (310)
Q Consensus 197 vas~Aaa~ADTwASEIG~ls~~~PrLITT~K~VppGTnGGVSllGtlAsllGa~~Ia~va 256 (310)
+.-.+.-.+||.|=-.|+..+|++. . ++.| .=|++|.+.|++++.+++.+.
T Consensus 273 ~~~~~vw~~Di~AY~~G~~fGk~kl--~---~ISP----kKTwEG~iGGil~~vlv~~l~ 323 (403)
T PLN02953 273 ISFSGVIATDTFAFLGGKAFGRTPL--T---SISP----KKTWEGTFVGLVGCIAITILL 323 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCC--C---cCCC----CCeeeeehhHHHHHHHHHHHH
Confidence 3344566789999999999998653 1 3444 458999999999999887654
No 9
>PF12188 STAT2_C: Signal transducer and activator of transcription 2 C terminal; InterPro: IPR022756 This region is found in the mammalian signal transducer and activation of transcription (STAT) 2 protein, and is approximately 60 amino acids in length. The family is found in association with PF02865 from PFAM, PF00017 from PFAM, PF01017 from PFAM, PF02864 from PFAM. There is a conserved DLP sequence motif. STATs are involved in transcriptional regulation and are the only regulators known to be modulated by tyrosine phosphorylation. STAT2 forms a trimeric complex with STAT1 and IRF-9 (Interferon Regulatory Factor 9), on activation of the cell by interferon, which is called ISGF3 (Interferon-stimulated gene factor 3). The C-terminal domain of STAT2 contains a nuclear export signal (NES) which allows export of STAT2 into the cytoplasm along with any complexed molecules. ; PDB: 2KA4_B.
Probab=58.79 E-value=4.1 Score=30.84 Aligned_cols=41 Identities=37% Similarity=0.506 Sum_probs=20.7
Q ss_pred CCCcccccccccCCCCCcccccccCC-CCCCCCCCCCCCccccc
Q 021572 11 PPVPALWFPHSLQKTPKFEFPIFRNP-NISNSTSNCNSSKMLLL 53 (310)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 53 (310)
-|+|.-=.||.||.--.-|.-||||+ +|..-+.| ..++..-
T Consensus 2 Q~~pEpDLP~DL~hlnteemeifrN~~~ieeImpn--gdPlLag 43 (56)
T PF12188_consen 2 QPVPEPDLPHDLQHLNTEEMEIFRNSMKIEEIMPN--GDPLLAG 43 (56)
T ss_dssp ---------HHHHTS--TGGGGGTTS--TTTSS-S--S-STTHH
T ss_pred CCCCCCCccHHHHHhChHHHHHHhccccHhhhccC--CCcccCC
Confidence 45666668999999999999999999 66665544 4455443
No 10
>PRK11624 cdsA CDP-diglyceride synthase; Provisional
Probab=58.53 E-value=62 Score=31.14 Aligned_cols=50 Identities=24% Similarity=0.385 Sum_probs=38.0
Q ss_pred HHHhhchhhhhhhhcccCCCceEeeCCeecCCCCCcccchhHHHHHHHHHHHHHHHHH
Q 021572 200 FCTKLSDTVSSEIGKAYGKTTYLVTTFKVVPRGTEGAVSVEGTFAGIFASILLAWVGC 257 (310)
Q Consensus 200 ~Aaa~ADTwASEIG~ls~~~PrLITT~K~VppGTnGGVSllGtlAsllGa~~Ia~va~ 257 (310)
+.+-.+||.|==.|+..+|+. +. .++.|+ =|+||.+.|++++.+++.+..
T Consensus 159 ~~vw~sDt~AYf~Gr~fGk~K-L~---P~ISPk----KTwEG~iGg~~~~~~~~~~~~ 208 (285)
T PRK11624 159 ILVWGADSGAYMFGKLFGKHK-LA---PKVSPG----KTWEGFIGGLATAAVISWLFG 208 (285)
T ss_pred HHHHHHHHHHHHHHHHhCCCC-CC---CcCCCC----CchhhhHHHHHHHHHHHHHHH
Confidence 456779999999999998753 22 244443 489999999999998877653
No 11
>PRK10484 putative transporter; Provisional
Probab=47.13 E-value=1e+02 Score=31.53 Aligned_cols=25 Identities=8% Similarity=0.114 Sum_probs=20.2
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHH
Q 021572 94 GSPILVSGLSPSGIAAAFLLGTLTW 118 (310)
Q Consensus 94 ~~~~~~ksLT~sGa~aA~lvG~l~~ 118 (310)
..++.-|..|..|++++.++|.+..
T Consensus 422 llgl~wkr~n~~ga~~g~i~G~~~~ 446 (523)
T PRK10484 422 IVGFFTKRVPALAAKVALGFGIILY 446 (523)
T ss_pred HHHHHhCcCChHHHHHHHHHHHHHH
Confidence 3555667899999999999998653
No 12
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=44.38 E-value=48 Score=28.55 Aligned_cols=37 Identities=24% Similarity=0.234 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHhhchhhHHHHHHHHhhhhhhhhcch
Q 021572 104 PSGIAAAFLLGTLTWRAFGPSGFLLVATYFIIGTAATKVKM 144 (310)
Q Consensus 104 ~sGa~aA~lvG~l~~~~~G~~g~llLl~FFlssS~~TK~k~ 144 (310)
.+..+++.++|++++ |+-.+.+++|-+-|-..-.+++
T Consensus 8 ~~a~Ia~mVlGFi~f----WPlGla~Lay~iw~~rm~~~~~ 44 (115)
T PF11014_consen 8 KPAWIAAMVLGFIVF----WPLGLALLAYMIWGKRMFGFKR 44 (115)
T ss_pred chHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhhhc
Confidence 356889999999987 4444566777776644443333
No 13
>PRK12488 acetate permease; Provisional
Probab=44.28 E-value=1e+02 Score=32.06 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=19.3
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHH
Q 021572 94 GSPILVSGLSPSGIAAAFLLGTLT 117 (310)
Q Consensus 94 ~~~~~~ksLT~sGa~aA~lvG~l~ 117 (310)
..++.-|..|..|++++.++|.+.
T Consensus 448 llgl~wkr~t~~ga~ag~i~G~~~ 471 (549)
T PRK12488 448 FLSMFWKGLTTRGAVAGSYAGLVS 471 (549)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHH
Confidence 355556779999999999999764
No 14
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=43.36 E-value=43 Score=30.17 Aligned_cols=59 Identities=24% Similarity=0.395 Sum_probs=42.5
Q ss_pred cccccCCCC---CcccccccCCCCCCCCCCCCCCcccccccCCCcchHHHHHHHHHHHcccCCc
Q 021572 18 FPHSLQKTP---KFEFPIFRNPNISNSTSNCNSSKMLLLHRANAAPSLQVAVSEAMNLVQLSQP 78 (310)
Q Consensus 18 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 78 (310)
|||..-..| ||+.|.| .||.--|.+-|-|- +.--+-=-++.++.+.|.+.+++++..|+
T Consensus 64 F~~dyP~~PPkckF~~pl~-HPNVypsgtVcLsi-L~e~~~W~paitikqiL~gIqdLL~~Pn~ 125 (158)
T KOG0424|consen 64 FPDDYPSSPPKCKFKPPLF-HPNVYPSGTVCLSI-LNEEKDWRPAITIKQILLGIQDLLDTPNI 125 (158)
T ss_pred CCccCCCCCCccccCCCCc-CCCcCCCCcEehhh-hccccCCCchhhHHHHHHHHHHHhcCCCC
Confidence 666655443 5666766 79999999999762 11222246788899999999999988876
No 15
>PRK09395 actP acetate permease; Provisional
Probab=42.92 E-value=79 Score=32.72 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=20.0
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHH
Q 021572 94 GSPILVSGLSPSGIAAAFLLGTLTW 118 (310)
Q Consensus 94 ~~~~~~ksLT~sGa~aA~lvG~l~~ 118 (310)
..++.-|..|..|++++.++|.+..
T Consensus 450 llglfwkr~~~~gA~ag~i~G~~~~ 474 (551)
T PRK09395 450 LLSMYWKGLTTRGAVIGGWLGLISA 474 (551)
T ss_pred HHHHhcCCCchhhHHHHHHHHHHHH
Confidence 3555667799999999999998643
No 16
>KOG2468 consensus Dolichol kinase [Lipid transport and metabolism]
Probab=41.03 E-value=18 Score=37.84 Aligned_cols=52 Identities=31% Similarity=0.490 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhhchhhhhhhhcccCCCceEeeCCeecCCCCCcccchhHHHHHHHHHHHHHHH
Q 021572 193 QLGFVASFCTKLSDTVSSEIGKAYGKTTYLVTTFKVVPRGTEGAVSVEGTFAGIFASILLAWV 255 (310)
Q Consensus 193 ~lafvas~Aaa~ADTwASEIG~ls~~~PrLITT~K~VppGTnGGVSllGtlAsllGa~~Ia~v 255 (310)
+.-+.|-+|--.+||.||=+|+.+|+. .|+ || -=|+|||+|.+...++.-.+
T Consensus 410 l~~laGiLalGiGDTmASiiG~r~G~~-----RW~----~T--kKTlEGT~Afivs~~iv~~l 461 (510)
T KOG2468|consen 410 LALLAGILALGIGDTMASIIGKRYGRI-----RWS----GT--KKTLEGTLAFIVSSFIVCLL 461 (510)
T ss_pred hhhhhhheeeccchHHHHHHhhhhcce-----ecC----CC--cceeehhhHHHHHHHHHHHH
Confidence 445667778888999999999999874 233 44 24899999999987776444
No 17
>COG1585 Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=39.40 E-value=83 Score=27.44 Aligned_cols=36 Identities=22% Similarity=0.133 Sum_probs=20.6
Q ss_pred CChHHHHHHHHHHHHHHHhhchhhHHHHHHHHhhhhhhh
Q 021572 102 LSPSGIAAAFLLGTLTWRAFGPSGFLLVATYFIIGTAAT 140 (310)
Q Consensus 102 LT~sGa~aA~lvG~l~~~~~G~~g~llLl~FFlssS~~T 140 (310)
+.--| .+|+.+| .+...++.+.+-+++|-++|-++.
T Consensus 27 ll~~g-~aA~~vg--~~~l~~~~~~~q~v~f~~lsv~~~ 62 (140)
T COG1585 27 LLWLG-LAALAVG--LALLLLLSWWLQLVLFAILSVLLA 62 (140)
T ss_pred HHHHH-HHHHHHH--HHHHccchHHHHHHHHHHHHHHHH
Confidence 44455 6777788 333455655565555655555443
No 18
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=39.32 E-value=27 Score=30.18 Aligned_cols=25 Identities=24% Similarity=0.538 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHhhchhhHHHHHHHHh
Q 021572 106 GIAAAFLLGTLTWRAFGPSGFLLVATYFI 134 (310)
Q Consensus 106 Ga~aA~lvG~l~~~~~G~~g~llLl~FFl 134 (310)
|+++++++|++ +|.-+.++++.|++
T Consensus 64 ~~i~~Ii~gv~----aGvIg~Illi~y~i 88 (122)
T PF01102_consen 64 PAIIGIIFGVM----AGVIGIILLISYCI 88 (122)
T ss_dssp TCHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred cceeehhHHHH----HHHHHHHHHHHHHH
Confidence 34555555554 23333445566665
No 19
>PF06324 Pigment_DH: Pigment-dispersing hormone (PDH); InterPro: IPR009396 This family consists of several eukaryotic pigment-dispersing hormone (PDH) proteins. The pigment-dispersing hormone (PDH) is produced in the eyestalks of Crustacea where it induces light-adapting movements of pigment in the compound eye and regulates the pigment dispersion in the chromatophores [].; GO: 0005179 hormone activity, 0009416 response to light stimulus, 0005576 extracellular region
Probab=39.22 E-value=15 Score=22.19 Aligned_cols=10 Identities=40% Similarity=0.786 Sum_probs=8.1
Q ss_pred HHHHhhcCCC
Q 021572 300 STLNKLFSLP 309 (310)
Q Consensus 300 SllDSll~~~ 309 (310)
-+++|+||+|
T Consensus 3 elINslLglp 12 (18)
T PF06324_consen 3 ELINSLLGLP 12 (18)
T ss_pred HHHHHHHcch
Confidence 3688999987
No 20
>PRK04032 hypothetical protein; Provisional
Probab=38.17 E-value=1e+02 Score=27.76 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=19.2
Q ss_pred CCcccchhHHHHHHHHHHHHHHHH
Q 021572 233 TEGAVSVEGTFAGIFASILLAWVG 256 (310)
Q Consensus 233 TnGGVSllGtlAsllGa~~Ia~va 256 (310)
.|=.=|+||.+.|++++.+.+.+.
T Consensus 33 iSP~KTwEG~iGGv~~~~l~~~~~ 56 (159)
T PRK04032 33 LGDGKTWRGLIGGILFGTLVGLIQ 56 (159)
T ss_pred CCCCCcHHHhHHHHHHHHHHHHHH
Confidence 455669999999999998887654
No 21
>COG4854 Predicted membrane protein [Function unknown]
Probab=36.35 E-value=1.6e+02 Score=25.75 Aligned_cols=69 Identities=22% Similarity=0.155 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHH-HHhhchhhHHHHHHHHhhhhhhhhcchhhhhhhhhh-----hhccCccCcccccccchHHH
Q 021572 104 PSGIAAAFLLGTLT-WRAFGPSGFLLVATYFIIGTAATKVKMAQKEAQGVA-----EKRKGRRGPGSVIGSSAAGC 173 (310)
Q Consensus 104 ~sGa~aA~lvG~l~-~~~~G~~g~llLl~FFlssS~~TK~k~~~K~~~~~~-----ekkgG~R~~~QVlaNg~~a~ 173 (310)
..+.....++|..+ |..-.-.|++.++.||.---.++-+|.+..+-.+++ .++..+|+ .||+.-|..-.
T Consensus 9 ~~l~~ivm~~GA~~g~a~~sGn~~iav~af~ag~~~l~l~k~Rv~~vvEDER~lrvse~aSr~T-iqV~~is~Al~ 83 (126)
T COG4854 9 KILFAIVMAVGAAVGYAVESGNWFIAVIAFFAGAALLSLVKRRVDEVVEDERTLRVSERASRRT-IQVFSISAALG 83 (126)
T ss_pred HHHHHHHHHHHHHHheeecCCCeehHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhee-EEEEEehHHHH
Confidence 34445555555543 211222367888888776666666665544333222 23445555 69998874433
No 22
>PLN02594 phosphatidate cytidylyltransferase
Probab=35.09 E-value=1.7e+02 Score=29.57 Aligned_cols=50 Identities=14% Similarity=0.222 Sum_probs=37.8
Q ss_pred HHHHHhhchhhhhhhhcccCCCceEeeCCeecCCCCCcccchhHHHHHHHHHHHHHHHH
Q 021572 198 ASFCTKLSDTVSSEIGKAYGKTTYLVTTFKVVPRGTEGAVSVEGTFAGIFASILLAWVG 256 (310)
Q Consensus 198 as~Aaa~ADTwASEIG~ls~~~PrLITT~K~VppGTnGGVSllGtlAsllGa~~Ia~va 256 (310)
......+.||+|==.|+..||+|. + . +.|. =|+||.+.|.+++.+++.+.
T Consensus 130 ~~~lV~~nDi~AY~~G~~fGk~kL-~-~---iSPk----KTwEGfiGg~i~T~i~~~~~ 179 (342)
T PLN02594 130 PASLIVINDIAAYLFGFFFGRTPL-I-K---LSPK----KTWEGFIGASVTTLISAFYL 179 (342)
T ss_pred HHHHHHHHhHHHHHHHHHhcCCCC-C-c---cCCC----CchhhhHHHHHHHHHHHHHH
Confidence 345567799999999999999874 3 2 2222 37999999999988887754
No 23
>PF08570 DUF1761: Protein of unknown function (DUF1761); InterPro: IPR013879 This entry shows conserved fungal proteins with unknown function.
Probab=32.62 E-value=2.1e+02 Score=23.65 Aligned_cols=14 Identities=21% Similarity=0.199 Sum_probs=8.4
Q ss_pred chhhhhhhhhhhhc
Q 021572 143 KMAQKEAQGVAEKR 156 (310)
Q Consensus 143 k~~~K~~~~~~ekk 156 (310)
+++..|+.+..+++
T Consensus 24 g~~W~~~~g~~~~~ 37 (126)
T PF08570_consen 24 GKAWMRAMGITPED 37 (126)
T ss_pred HHHHHHHcCCCccc
Confidence 67766666555443
No 24
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=29.52 E-value=33 Score=32.25 Aligned_cols=32 Identities=19% Similarity=0.403 Sum_probs=23.5
Q ss_pred hhhhhhhcccCCCceEee----CCeecCCCCCcccchhHH
Q 021572 207 TVSSEIGKAYGKTTYLVT----TFKVVPRGTEGAVSVEGT 242 (310)
Q Consensus 207 TwASEIG~ls~~~PrLIT----T~K~VppGTnGGVSllGt 242 (310)
+|+|.++.+ ||.|| .+|||++|++|=.-+.++
T Consensus 152 ~F~~~VasL----pRIiTl~d~~i~~~~~~~ss~L~ls~~ 187 (211)
T COG3167 152 QFVSDVASL----PRIITLHDLKIKPVPEGKSSILNLSAR 187 (211)
T ss_pred HHHHHHhhc----ceeeeeecceeccCCCCCcceEEeeeh
Confidence 466778887 67776 478999999986655443
No 25
>COG3030 FxsA Protein affecting phage T7 exclusion by the F plasmid [General function prediction only]
Probab=28.97 E-value=1.8e+02 Score=26.23 Aligned_cols=53 Identities=19% Similarity=0.182 Sum_probs=34.2
Q ss_pred HHHHHHHHhhhhhhhhcchhhhhhhhhhhhccCccCcccccccchHHHHHHHHH
Q 021572 126 FLLVATYFIIGTAATKVKMAQKEAQGVAEKRKGRRGPGSVIGSSAAGCVCAFLS 179 (310)
Q Consensus 126 ~llLl~FFlssS~~TK~k~~~K~~~~~~ekkgG~R~~~QVlaNg~~a~l~All~ 179 (310)
..++++.++.|-.+.|...-+--..-.++-+.| |.+.+-+.+|+.-.+.+++.
T Consensus 33 l~Lvilt~~~G~~l~r~qG~~~l~~~q~~~~~G-~~P~~~ll~g~~~~vagiLL 85 (158)
T COG3030 33 LLLVILTSVLGALLLRVQGFGTLLRAQAALASG-EVPGAELLDGLLLIIAGILL 85 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCcHHHHHHhHHHHHHHHHH
Confidence 345666778888887766554322222333456 99999999997766666543
No 26
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=28.29 E-value=1.4e+02 Score=29.58 Aligned_cols=61 Identities=23% Similarity=0.178 Sum_probs=39.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHh-hcCCChHHHHHHHHHHHHHHHhhchhh----------HHHHHHHHhhhhhhhhcch
Q 021572 76 SQPTWQSALLSNVVIFVLGSPIL-VSGLSPSGIAAAFLLGTLTWRAFGPSG----------FLLVATYFIIGTAATKVKM 144 (310)
Q Consensus 76 ~~~~w~~a~~~n~~l~~~~~~~~-~ksLT~sGa~aA~lvG~l~~~~~G~~g----------~llLl~FFlssS~~TK~k~ 144 (310)
-+-+|.+|.++ ++| .|.+-.+|+.+|..+-++.-..+||.. ++.-..|++.|-+..|-+.
T Consensus 82 GDKTFfiAAlm---------Amr~~R~~Vf~Ga~~AL~lMTiLS~~lG~aap~lipr~~T~~~~t~LF~iFGlkmL~eg~ 152 (294)
T KOG2881|consen 82 GDKTFFIAALM---------AMRYPRLTVFSGAMSALALMTILSVLLGWAAPNLIPRKYTYYLATALFLIFGLKMLKEGW 152 (294)
T ss_pred cchHHHHHHHH---------HhhccchhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34467665443 333 455567999999999998877788754 2344556666766666554
Q ss_pred h
Q 021572 145 A 145 (310)
Q Consensus 145 ~ 145 (310)
+
T Consensus 153 ~ 153 (294)
T KOG2881|consen 153 E 153 (294)
T ss_pred c
Confidence 3
No 27
>PRK10263 DNA translocase FtsK; Provisional
Probab=27.94 E-value=1.1e+03 Score=28.23 Aligned_cols=31 Identities=23% Similarity=0.378 Sum_probs=22.1
Q ss_pred ChHHHHHHHHHHHHHHHhhchhhHHHHHHHHh
Q 021572 103 SPSGIAAAFLLGTLTWRAFGPSGFLLVATYFI 134 (310)
Q Consensus 103 T~sGa~aA~lvG~l~~~~~G~~g~llLl~FFl 134 (310)
+..|.++|++-.++.. .||+..|++.+++|+
T Consensus 62 Nl~GiVGA~LAD~L~~-LFGl~AYLLP~LL~~ 92 (1355)
T PRK10263 62 NLGGMPGAWLADTLFF-IFGVMAYTIPVIIVG 92 (1355)
T ss_pred cccchHHHHHHHHHHH-HHhHHHHHHHHHHHH
Confidence 3458999999887776 688877776654443
No 28
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=27.48 E-value=1.3e+02 Score=22.22 Aligned_cols=39 Identities=23% Similarity=0.206 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHhhchhhHHHHHHHHhhhhhhhhcc
Q 021572 104 PSGIAAAFLLGTLTWRAFGPSGFLLVATYFIIGTAATKVK 143 (310)
Q Consensus 104 ~sGa~aA~lvG~l~~~~~G~~g~llLl~FFlssS~~TK~k 143 (310)
.-|++.++++|.+.. .+|....+.++.+-..|..+-|+.
T Consensus 11 iiG~~~G~ila~l~l-~~GF~~tl~i~~~~~iG~~iG~~~ 49 (51)
T PF10031_consen 11 IIGGLIGLILALLIL-TFGFWKTLFILLFAAIGYYIGKYL 49 (51)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457788888887765 466655566667777777666553
No 29
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=26.25 E-value=3.2e+02 Score=27.89 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=20.0
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHH
Q 021572 95 SPILVSGLSPSGIAAAFLLGTLTW 118 (310)
Q Consensus 95 ~~~~~ksLT~sGa~aA~lvG~l~~ 118 (310)
.++.-|..|..|++++.++|..+.
T Consensus 418 lgl~wkr~t~~ga~~g~i~G~~~~ 441 (502)
T PRK15419 418 FSVMWSRMTRNGALAGMIIGALTV 441 (502)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHH
Confidence 456667899999999999998763
No 30
>PF11992 DUF3488: Domain of unknown function (DUF3488); InterPro: IPR021878 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 323 to 339 amino acids in length. This domain is found associated with PF01841 from PFAM. This domain has a conserved PLW sequence motif. This domain contains 6 transmembrane helices.
Probab=25.95 E-value=6.1e+02 Score=24.54 Aligned_cols=19 Identities=16% Similarity=-0.109 Sum_probs=12.8
Q ss_pred CccCcccccccchHHHHHH
Q 021572 158 GRRGPGSVIGSSAAGCVCA 176 (310)
Q Consensus 158 G~R~~~QVlaNg~~a~l~A 176 (310)
.+||..|++.=+..-+.++
T Consensus 98 ~~RD~~~l~~l~~fl~~~~ 116 (325)
T PF11992_consen 98 TRRDYYQLLLLGLFLLAAA 116 (325)
T ss_pred ccccHHHHHHHHHHHHHHH
Confidence 4799999986665444433
No 31
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=24.15 E-value=2.3e+02 Score=29.38 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=19.2
Q ss_pred HHHhhcCCChHHHHHHHHHHHHH
Q 021572 95 SPILVSGLSPSGIAAAFLLGTLT 117 (310)
Q Consensus 95 ~~~~~ksLT~sGa~aA~lvG~l~ 117 (310)
.++.-|..|..|++++.++|.+.
T Consensus 449 lgl~Wkr~n~~GA~ag~i~G~~~ 471 (549)
T TIGR02711 449 LSMYWSKLTTRGAMIGGWLGLIT 471 (549)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHH
Confidence 55566789999999999999765
No 32
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=23.53 E-value=2.7e+02 Score=28.80 Aligned_cols=25 Identities=20% Similarity=0.081 Sum_probs=20.7
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHH
Q 021572 94 GSPILVSGLSPSGIAAAFLLGTLTW 118 (310)
Q Consensus 94 ~~~~~~ksLT~sGa~aA~lvG~l~~ 118 (310)
..++.-|..|..|++++.++|+.++
T Consensus 458 llgl~w~r~~~~ga~~g~i~G~~~~ 482 (552)
T TIGR03648 458 VLGIFWKRMNREGAIAGMLTGLGFT 482 (552)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 4566677899999999999998764
No 33
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=23.22 E-value=4.4e+02 Score=26.74 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=19.5
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHH
Q 021572 95 SPILVSGLSPSGIAAAFLLGTLTW 118 (310)
Q Consensus 95 ~~~~~ksLT~sGa~aA~lvG~l~~ 118 (310)
.++.-|..|..|++++.++|.+..
T Consensus 411 lgl~w~r~t~~ga~~g~i~G~~~~ 434 (487)
T TIGR02121 411 FSLYWKRMTRNGALAGMIIGAVTV 434 (487)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHH
Confidence 445557789999999999998764
No 34
>PRK14416 membrane protein; Provisional
Probab=22.20 E-value=3.6e+02 Score=25.15 Aligned_cols=60 Identities=15% Similarity=0.078 Sum_probs=32.5
Q ss_pred HHhhcCCChHHHHHHHHHHHHHHHhhchhhHH----HHHHHHhhhhhhhhcchhhhhhhhhhhhc
Q 021572 96 PILVSGLSPSGIAAAFLLGTLTWRAFGPSGFL----LVATYFIIGTAATKVKMAQKEAQGVAEKR 156 (310)
Q Consensus 96 ~~~~ksLT~sGa~aA~lvG~l~~~~~G~~g~l----lLl~FFlssS~~TK~k~~~K~~~~~~ekk 156 (310)
-+..|..+.+..+++..+-+..|. ++-..+. .++..++.--..-|.|++.|+-++-+|+|
T Consensus 127 ~~itr~vSL~Si~a~~~~p~~~~~-~~~~~~~~~~~~~l~~~i~~~v~~~h~~nI~r~~~~~e~k 190 (200)
T PRK14416 127 LALTRNIALATGIALFSLPFLVWY-GSHSEFATLISVLLFLMIGIKFVLDNRKSLRDPANRRNLI 190 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HcCchHHHHHHHHHHHHHHHHHHHhhHhhHHHHHcCCccc
Confidence 345677888888888777776654 3322333 22233333334446665555555444444
No 35
>COG1950 Predicted membrane protein [Function unknown]
Probab=22.09 E-value=3.8e+02 Score=23.37 Aligned_cols=74 Identities=16% Similarity=0.218 Sum_probs=43.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhh----------------cchhh--HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 021572 236 AVSVEGTFAGIFASILLAWVGCLTG----------------QVSLI--IVSFHLFSDFTHALMLFTSMFSYFFLYALICL 297 (310)
Q Consensus 236 GVSllGtlAsllGa~~Ia~va~llg----------------~~~~~--~~~~~~~~~~g~~g~lfdSvl~~~~~~~~aGl 297 (310)
||++-|..+.+..+.+++++-.+.- +.... .+.+...+...-.+.+.|..+-.+.-..+-..
T Consensus 24 Gv~v~~~~~aliaa~IlglvNalIRPIL~ilslPltilTlGLF~fVINai~l~laa~~~~~~fqi~gFgaAi~gaivLsi 103 (120)
T COG1950 24 GVHVSGFGAALIAAVILGLVNALIRPILLILSLPLTILTLGLFTFVINAIMLWLAAALVGGGFQIDGFGAAILGAIVLSI 103 (120)
T ss_pred ceEeccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHH
Confidence 5777888899999999988765431 11111 11111222222224577776655555556677
Q ss_pred HHHHHHhhcCCC
Q 021572 298 FTSTLNKLFSLP 309 (310)
Q Consensus 298 ~GSllDSll~~~ 309 (310)
.-+++++++..+
T Consensus 104 is~li~~~l~~~ 115 (120)
T COG1950 104 ISWLINKLLLRD 115 (120)
T ss_pred HHHHHHHHHhhc
Confidence 778888877654
No 36
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=22.08 E-value=1.3e+02 Score=26.33 Aligned_cols=58 Identities=22% Similarity=0.457 Sum_probs=38.7
Q ss_pred cccccc-CCCCCccc--ccccCCCCCCCCCCCCCCcccccccCCCcchHHHHHHHHHHHcccCCc
Q 021572 17 WFPHSL-QKTPKFEF--PIFRNPNISNSTSNCNSSKMLLLHRANAAPSLQVAVSEAMNLVQLSQP 78 (310)
Q Consensus 17 ~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 78 (310)
.||+.. .+.|++.| +|| +|||++...-|-+- +-.+=.++-++++.+...+.++...++
T Consensus 56 ~~p~~YP~~pP~v~F~t~i~-HPNV~~~G~iCl~i---L~~~W~p~~ti~~iL~~i~~ll~~P~~ 116 (152)
T PTZ00390 56 FLPEQYPMEPPKVRFLTKIY-HPNIDKLGRICLDI---LKDKWSPALQIRTVLLSIQALLSAPEP 116 (152)
T ss_pred ECccccCCCCCEEEEecCCe-eceECCCCeEECcc---CcccCCCCCcHHHHHHHHHHHHhCCCC
Confidence 344443 35565544 676 79999877778641 113455667899999988888887666
No 37
>PF03323 GerA: Bacillus/Clostridium GerA spore germination protein; InterPro: IPR004995 Dormant Bacillus subtilis spores germinate in the presence of particular nutrients called germinants. The spores are thought to recognise germinants through receptor proteins encoded by the gerA family of operons, which includes gerA, gerB, and gerK. The GerA proteins are predicted to be membrane associated.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=21.84 E-value=2e+02 Score=29.74 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcchhhH
Q 021572 239 VEGTFAGIFASILLAWVGCLTGQVSLII 266 (310)
Q Consensus 239 llGtlAsllGa~~Ia~va~llg~~~~~~ 266 (310)
..|..-|++|+++||=.+.--|++++..
T Consensus 348 ~ig~ti~iVGglviGqAaV~AglvS~~~ 375 (470)
T PF03323_consen 348 PIGQTIGIVGGLVIGQAAVQAGLVSPIM 375 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcCcce
Confidence 4688889999999998888888888653
No 38
>PF00950 ABC-3: ABC 3 transport family; InterPro: IPR001626 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 3 of ABC transporters.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016020 membrane
Probab=21.83 E-value=2.4e+02 Score=26.56 Aligned_cols=53 Identities=13% Similarity=0.066 Sum_probs=33.3
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHHHhhchhhHHHHHHHHhhhh-hhhhcchhhh
Q 021572 95 SPILVSGLSPSGIAAAFLLGTLTWRAFGPSGFLLVATYFIIGT-AATKVKMAQK 147 (310)
Q Consensus 95 ~~~~~ksLT~sGa~aA~lvG~l~~~~~G~~g~llLl~FFlssS-~~TK~k~~~K 147 (310)
.-+|+.++--.+.-|+.+.|...-..+|+....-.+.|-+... ...++++++|
T Consensus 26 vv~Rr~~f~~~alsH~al~Gvala~~l~~~~~~ga~~~~ll~a~~i~~l~~~~~ 79 (257)
T PF00950_consen 26 VVLRRMSFLGDALSHAALAGVALALLLGISPLLGAIIFALLAALLIGFLSRRSK 79 (257)
T ss_pred HHHhhHHHhhhhHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5588888888889999999987655677764443333433333 3444444433
No 39
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=21.73 E-value=1e+02 Score=25.89 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh
Q 021572 239 VEGTFAGIFASILLAWVGCLTG 260 (310)
Q Consensus 239 llGtlAsllGa~~Ia~va~llg 260 (310)
++|+++.++|+++||++=.++|
T Consensus 76 ilGlvgTi~gsliia~lr~~fg 97 (98)
T PF11166_consen 76 ILGLVGTIFGSLIIALLRTIFG 97 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 6899999999999998877665
No 40
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=21.36 E-value=7.1e+02 Score=27.43 Aligned_cols=37 Identities=22% Similarity=0.315 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHH-hhchhhHHHHHHHHhhhhhhhhcc
Q 021572 107 IAAAFLLGTLTWR-AFGPSGFLLVATYFIIGTAATKVK 143 (310)
Q Consensus 107 a~aA~lvG~l~~~-~~G~~g~llLl~FFlssS~~TK~k 143 (310)
+..|.++|.++.. ..++..++.++.+|+..-.+.|..
T Consensus 43 ~~~~~~~G~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (764)
T TIGR02865 43 SALGVLLGAISIQPKHSLKYLLLVAVIILLSYVLKNLT 80 (764)
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhhhhh
Confidence 3456666776432 223333455556666665555433
No 41
>PRK13592 ubiA prenyltransferase; Provisional
Probab=20.00 E-value=8.6e+02 Score=24.10 Aligned_cols=28 Identities=4% Similarity=0.048 Sum_probs=16.1
Q ss_pred hhhcchhh-hhhhhhhhhccCccCcccccc
Q 021572 139 ATKVKMAQ-KEAQGVAEKRKGRRGPGSVIG 167 (310)
Q Consensus 139 ~TK~k~~~-K~~~~~~ekkgG~R~~~QVla 167 (310)
+.-+..|. |+-+| +++|.+.|+.--.++
T Consensus 186 l~~l~rEI~KdieD-~gd~~~~~Tlpi~~G 214 (299)
T PRK13592 186 FPSLIWEVCRKIRA-PKDETEYVTYSKLFG 214 (299)
T ss_pred HHHHHHHHHHhhcC-CccccCCeeechhcc
Confidence 33344454 44444 445555888888887
Done!