Query 021572
Match_columns 310
No_of_seqs 176 out of 419
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 06:05:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021572.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021572hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dh4_A Sodium/glucose cotransp 86.1 1.5 5.3E-05 43.1 7.4 57 94-150 414-482 (530)
2 2xq2_A Sodium/glucose cotransp 79.1 7.5 0.00026 38.8 9.2 51 95-145 444-506 (593)
3 2ka4_B P113, signal transducer 70.7 2.4 8.2E-05 31.1 2.3 35 10-44 2-37 (57)
4 3r3q_A Suppressor protein STP2 40.6 14 0.00047 31.8 2.4 60 15-78 86-159 (162)
5 2aak_A UBC1, ubiquitin conjuga 30.3 66 0.0023 26.4 4.9 59 16-78 57-118 (152)
6 1jat_B Ubiquitin-conjugating e 27.9 41 0.0014 27.3 3.2 53 24-78 72-126 (138)
7 1ayz_A UBC2, ubiquitin-conjuga 27.8 75 0.0026 26.9 4.9 58 17-78 58-118 (169)
8 2k1k_A Ephrin type-A receptor 27.2 1.1E+02 0.0037 20.4 4.5 17 100-117 6-22 (38)
9 2e2c_A Ubiquitin conjugating e 26.8 75 0.0026 26.2 4.6 58 17-78 63-123 (156)
10 2c4o_A Ubiquitin-conjugating e 26.4 72 0.0025 26.8 4.5 59 16-78 72-133 (165)
11 1z2u_A Ubiquitin-conjugating e 25.8 77 0.0026 25.9 4.5 58 17-78 58-118 (150)
12 1c4z_D UBCH7, ubiquitin conjug 25.6 93 0.0032 25.6 5.0 59 17-78 56-117 (154)
13 1wzv_A Ubiquitin-conjugating e 24.5 86 0.0029 25.8 4.6 59 17-78 58-119 (155)
14 3rz3_A Ubiquitin-conjugating e 24.3 98 0.0033 26.4 5.0 54 24-78 70-135 (183)
15 1tte_A Ubiquitin-conjugating e 21.2 1.4E+02 0.0048 26.4 5.5 51 24-78 65-118 (215)
16 1jat_A Ubiquitin-conjugating e 20.7 1.1E+02 0.0037 25.2 4.4 58 17-78 59-119 (155)
17 2fo3_A Ubiquitin-conjugating e 20.4 91 0.0031 24.8 3.8 52 24-78 68-121 (125)
No 1
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=86.10 E-value=1.5 Score=43.12 Aligned_cols=57 Identities=5% Similarity=-0.030 Sum_probs=35.8
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHHhh-----ch-------hhHHHHHHHHhhhhhhhhcchhhhhhh
Q 021572 94 GSPILVSGLSPSGIAAAFLLGTLTWRAF-----GP-------SGFLLVATYFIIGTAATKVKMAQKEAQ 150 (310)
Q Consensus 94 ~~~~~~ksLT~sGa~aA~lvG~l~~~~~-----G~-------~g~llLl~FFlssS~~TK~k~~~K~~~ 150 (310)
..++.-|..|..|++++.++|.+++... .+ .++.+-+..++..|++||=+.+++++.
T Consensus 414 llgl~wkr~~~~gA~~g~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~vSl~t~~~~~~~~~~ 482 (530)
T 3dh4_A 414 LLGLFWKKTTSKGAIIGVVASIPFALFLKFMPLSMPFMDQMLYTLLFTMVVIAFTSLSTSINDDDPKGI 482 (530)
T ss_dssp HHHHHCTTCCHHHHHHHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHHHHHHHTTCSSSSCTTCC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHhhcCCCccccccc
Confidence 3555567799999999999998764321 11 112333345666788887666555443
No 2
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=79.06 E-value=7.5 Score=38.78 Aligned_cols=51 Identities=6% Similarity=-0.001 Sum_probs=31.4
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHHHhhc-----hh-------hHHHHHHHHhhhhhhhhcchh
Q 021572 95 SPILVSGLSPSGIAAAFLLGTLTWRAFG-----PS-------GFLLVATYFIIGTAATKVKMA 145 (310)
Q Consensus 95 ~~~~~ksLT~sGa~aA~lvG~l~~~~~G-----~~-------g~llLl~FFlssS~~TK~k~~ 145 (310)
.++.-|..|..|++++.++|.+++...- .+ ++.+-+..++..|++||-+.+
T Consensus 444 lglfwkr~~~~gA~~g~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~v~vSl~t~~~~~ 506 (593)
T 2xq2_A 444 LGLFWKKTTSKGAIIGVVASIPFALFLKFMPLSMPFMDQMLYTLLFTMVVIAFTSLSTSINDD 506 (593)
T ss_dssp HHHHCTTCCHHHHHHHHHHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHHHHHHCSSSS
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHhheeecCCCch
Confidence 4555677999999999999987653211 11 112222345667788875444
No 3
>2ka4_B P113, signal transducer and activator of transcription 2; CBP/P300, STAT2, TAZ1, transactivation domain, bromodomain, alternative splicing; NMR {Homo sapiens}
Probab=70.66 E-value=2.4 Score=31.07 Aligned_cols=35 Identities=34% Similarity=0.445 Sum_probs=28.9
Q ss_pred CCCCcccccccccCCCCCcccccccCC-CCCCCCCC
Q 021572 10 SPPVPALWFPHSLQKTPKFEFPIFRNP-NISNSTSN 44 (310)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 44 (310)
|-|+|.-=.||.||.--.-|.-||||+ +|..-+.|
T Consensus 2 ~~~~~EpDLP~DL~~lnte~meifrN~~~ieeImpn 37 (57)
T 2ka4_B 2 SHMVPEPDLPHDLRHLNTEPMEIFRNSVKIEEIMPN 37 (57)
T ss_dssp CSSCCCCCCCHHHHTSCCTGGGGGTTSCCTTTSSCS
T ss_pred CCCCCCCCccHHHHHhChHHHHHHhccccHhhcccC
Confidence 456777778999999998999999999 88776654
No 4
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=40.63 E-value=14 Score=31.84 Aligned_cols=60 Identities=22% Similarity=0.307 Sum_probs=40.4
Q ss_pred cccccccc-CCCCCccc-c-----------cccCCCCCCCCCCCCCCcccccccCCC-cchHHHHHHHHHHHcccCCc
Q 021572 15 ALWFPHSL-QKTPKFEF-P-----------IFRNPNISNSTSNCNSSKMLLLHRANA-APSLQVAVSEAMNLVQLSQP 78 (310)
Q Consensus 15 ~~~~~~~~-~~~~~~~~-~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~ 78 (310)
.+|||+.. .+-|+.-| | |+.+||+..+..-| ++.+++=.+ +-.+.+.++.-..+++..+|
T Consensus 86 ~IwlP~~YP~~PP~v~v~p~t~~m~~~~~~I~~hpnVD~~G~I~----lpyL~~W~p~~s~L~~ll~~l~~lf~ep~~ 159 (162)
T 3r3q_A 86 IMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIA----LPILHAWDPAAMNLIMVVQELMSLLHEPPQ 159 (162)
T ss_dssp EEECCTTTTTSCCEEEECGGGCCTTTSCTTSTHHHHBCTTSBBC----CGGGGSCCGGGCCHHHHHHHHHHTTSCCCC
T ss_pred EEEeCcccCCCCCEEEEECCCccccccccccCCCCCCCCCCcEe----CcccccCCCCcCcHHHHHHHHHHHhcCCCC
Confidence 58999988 45555544 4 44467775544444 334455555 56899999998899888776
No 5
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=30.29 E-value=66 Score=26.40 Aligned_cols=59 Identities=24% Similarity=0.355 Sum_probs=36.5
Q ss_pred cccccccC-CCCC--cccccccCCCCCCCCCCCCCCcccccccCCCcchHHHHHHHHHHHcccCCc
Q 021572 16 LWFPHSLQ-KTPK--FEFPIFRNPNISNSTSNCNSSKMLLLHRANAAPSLQVAVSEAMNLVQLSQP 78 (310)
Q Consensus 16 ~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 78 (310)
+.||...- +-|+ |.-||| +|||..+..-|-+- +..+=.++-.++..+...+.++...++
T Consensus 57 i~fp~~YP~~PP~v~f~t~i~-HPnv~~~G~iCl~i---L~~~W~p~~~i~~vl~~i~~ll~~p~~ 118 (152)
T 2aak_A 57 LQFSEDYPNKPPTVRFVSRMF-HPNIYADGSICLDI---LQNQWSPIYDVAAILTSIQSLLCDPNP 118 (152)
T ss_dssp EECCTTTTTSCCEEEESSCCC-CTTBCTTSBBCCGG---GTTSCCTTCCHHHHHHHHHHHHTSCCT
T ss_pred EECCCCCCCCCCEEEEecCcc-cCCCCCCCEEechh---hcCCCCCCCcHHHHHHHHHHHHhCCCC
Confidence 34554433 3444 444665 79999877778642 112344566788888888887776655
No 6
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=27.94 E-value=41 Score=27.35 Aligned_cols=53 Identities=13% Similarity=0.142 Sum_probs=30.3
Q ss_pred CCCCcc--cccccCCCCCCCCCCCCCCcccccccCCCcchHHHHHHHHHHHcccCCc
Q 021572 24 KTPKFE--FPIFRNPNISNSTSNCNSSKMLLLHRANAAPSLQVAVSEAMNLVQLSQP 78 (310)
Q Consensus 24 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 78 (310)
+-|+.. -||| +|||...+.++ -+-+..+.+=.++-.++..+...+.++...+|
T Consensus 72 ~PP~v~f~t~i~-HPnv~~~~G~i-~~cL~~l~~W~p~~~i~~vl~~i~~ll~~pn~ 126 (138)
T 1jat_B 72 SPPKVTFISKIN-LPCVNPTTGEV-QTDFHTLRDWKRAYTMETLLLDLRKEMATPAN 126 (138)
T ss_dssp SCCEEEESBCCC-CTTBCTTTCBB-CTTSHHHHTCCTTCCHHHHHHHHHHHHTSHHH
T ss_pred CCCceEEEcccc-cCCEeCCCCEE-eeecccCCCCCCcCcHHHHHHHHHHHHcCCCC
Confidence 445443 4665 79998764442 11122223455567788888877777665443
No 7
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=27.84 E-value=75 Score=26.86 Aligned_cols=58 Identities=21% Similarity=0.377 Sum_probs=36.1
Q ss_pred cccccc-CCCCCccc--ccccCCCCCCCCCCCCCCcccccccCCCcchHHHHHHHHHHHcccCCc
Q 021572 17 WFPHSL-QKTPKFEF--PIFRNPNISNSTSNCNSSKMLLLHRANAAPSLQVAVSEAMNLVQLSQP 78 (310)
Q Consensus 17 ~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 78 (310)
.||... .+.|+..| ||| +|||..+..-|-+- +..+=.++-.++.++...+.++...+|
T Consensus 58 ~fp~~YP~~PP~v~F~t~i~-HPNI~~~G~ICl~i---L~~~WsP~~~i~~vL~si~~ll~~Pn~ 118 (169)
T 1ayz_A 58 EFDEEYPNKPPHVKFLSEMF-HPNVYANGEICLDI---LQNRWTPTYDVASILTSIQSLFNDPNP 118 (169)
T ss_dssp ECCTTTTTSCCEEEESSCCC-CTTBCTTSBBCCGG---GTTTCCTTCCHHHHHHHHHHHHTCCCC
T ss_pred ECcccCCCCCCccccccCCc-cCCCCCCCeEeehh---hccCCCCcCcHHHHHHHHHHHHhCCCC
Confidence 344433 24455444 666 69999877778652 123345566788888877777766555
No 8
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=27.24 E-value=1.1e+02 Score=20.36 Aligned_cols=17 Identities=35% Similarity=0.604 Sum_probs=13.2
Q ss_pred cCCChHHHHHHHHHHHHH
Q 021572 100 SGLSPSGIAAAFLLGTLT 117 (310)
Q Consensus 100 ksLT~sGa~aA~lvG~l~ 117 (310)
+.|+ .|+++++++|.+.
T Consensus 6 ~~ls-~GaIAGiVvG~v~ 22 (38)
T 2k1k_A 6 RGLT-GGEIVAVIFGLLL 22 (38)
T ss_dssp TTCC-HHHHHHHHHHHHH
T ss_pred CCCC-CCceeeeehHHHH
Confidence 3465 7899999999875
No 9
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=26.78 E-value=75 Score=26.23 Aligned_cols=58 Identities=22% Similarity=0.354 Sum_probs=36.9
Q ss_pred ccccccC-CCCC--cccccccCCCCCCCCCCCCCCcccccccCCCcchHHHHHHHHHHHcccCCc
Q 021572 17 WFPHSLQ-KTPK--FEFPIFRNPNISNSTSNCNSSKMLLLHRANAAPSLQVAVSEAMNLVQLSQP 78 (310)
Q Consensus 17 ~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 78 (310)
.||...- +-|+ |.-||| +|||..+..-|-+- +..+=.++-.++.++...+.++...++
T Consensus 63 ~fp~~YP~~PP~v~f~t~i~-HPnv~~~G~iCl~i---L~~~W~p~~~i~~vL~si~~ll~~pn~ 123 (156)
T 2e2c_A 63 EFPSDYPYKPPVVKFTTPCW-HPNVDQSGNICLDI---LKENWTASYDVRTILLSLQSLLGEPNN 123 (156)
T ss_dssp ECCTTTTSSCCEEEESSCCC-BTTBCTTCBBCCGG---GTTTCCTTCCHHHHHHHHHHHTTSCCC
T ss_pred ECCCCCCCCCCEEEEeCCcc-cCCCccCceEECcc---ccccCCCCCcHHHHHHHHHHHHhCCCC
Confidence 3444432 3444 444777 79999877778653 113345567888888888888776554
No 10
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=26.39 E-value=72 Score=26.80 Aligned_cols=59 Identities=25% Similarity=0.415 Sum_probs=37.2
Q ss_pred ccccccc-CCCCCccc--ccccCCCCCCCCCCCCCCcccccccCCCcchHHHHHHHHHHHcccCCc
Q 021572 16 LWFPHSL-QKTPKFEF--PIFRNPNISNSTSNCNSSKMLLLHRANAAPSLQVAVSEAMNLVQLSQP 78 (310)
Q Consensus 16 ~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 78 (310)
+.||... .+-|+..| ||| +|||..+..-|-+-- ..+=.++-.++.++...+.++...+|
T Consensus 72 i~fp~~YP~~PP~v~F~T~i~-HPnV~~~G~ICl~iL---~~~W~P~~ti~~vL~si~~ll~~pn~ 133 (165)
T 2c4o_A 72 IHFPTDYPFKPPKVAFTTRIY-HPNINSNGSICLDIL---RSQWSPALTISKVLLSICSLLCDPNP 133 (165)
T ss_dssp EECCTTTTSSCCEEEECSCCC-BTTBCTTCBBCCGGG---TTTCCTTCCHHHHHHHHHHHHHSCCT
T ss_pred EECCCcCCCCCCEEEEecCCc-CCcCCCCCeEeehhh---cCCCCCcCcHHHHHHHHHHHHhCCCC
Confidence 3455444 34555444 665 799988777786521 13445567888888888887766555
No 11
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=25.85 E-value=77 Score=25.93 Aligned_cols=58 Identities=24% Similarity=0.353 Sum_probs=36.4
Q ss_pred cccccc-CCCCCcc--cccccCCCCCCCCCCCCCCcccccccCCCcchHHHHHHHHHHHcccCCc
Q 021572 17 WFPHSL-QKTPKFE--FPIFRNPNISNSTSNCNSSKMLLLHRANAAPSLQVAVSEAMNLVQLSQP 78 (310)
Q Consensus 17 ~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 78 (310)
.||... .+-|+.. -||| +|||..+..-|-+-- ..+=.++-.++.++...+.++...+|
T Consensus 58 ~fp~~YP~~PP~v~f~t~i~-HPnv~~~G~iCl~iL---~~~W~p~~~i~~vl~~i~~ll~~pn~ 118 (150)
T 1z2u_A 58 HFPTDYPFKPPKVAFTTRIY-HPNINSNGSICLDIL---RSQWSPALTISKVLLSICSLLCDPNP 118 (150)
T ss_dssp ECCTTTTSSCCEEEESSCCC-BTTBCTTCBBCCGGG---TTTCCTTCCHHHHHHHHHHHHHSCCT
T ss_pred ECCCCCCCCCcEEEEecCcc-cCcCCCCCeEeeccc---cCCCCCCCCHHHHHHHHHHHhhCCCC
Confidence 455443 2445444 4665 799988777786421 13445567888888888888776655
No 12
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=25.63 E-value=93 Score=25.56 Aligned_cols=59 Identities=27% Similarity=0.423 Sum_probs=35.4
Q ss_pred ccccccC-CCCC--cccccccCCCCCCCCCCCCCCcccccccCCCcchHHHHHHHHHHHcccCCc
Q 021572 17 WFPHSLQ-KTPK--FEFPIFRNPNISNSTSNCNSSKMLLLHRANAAPSLQVAVSEAMNLVQLSQP 78 (310)
Q Consensus 17 ~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 78 (310)
.||...- +-|+ |.-||| +|||..+..-|-+-- -..+=.++-++++.+...+.++...++
T Consensus 56 ~fp~~YP~~PP~v~f~t~i~-HPnv~~~G~iCl~iL--~~~~W~p~~~i~~vl~~i~~ll~~p~~ 117 (154)
T 1c4z_D 56 NFPAEYPFKPPKITFKTKIY-HPNIDEKGQVCLPVI--SAENWKPATKTDQVIQSLIALVNDPQP 117 (154)
T ss_dssp ECCTTTTTSCCEEEESSCCC-CTTBCTTCBBCCTTT--SSSSCCTTCCHHHHHHHHHHHHHSCCC
T ss_pred EeCCCCCCCCCEEEEeCCCc-cccCCCCCEEECCCC--CCCCCCCCCcHHHHHHHHHHHHcCCCC
Confidence 3444432 3444 444676 699998777786521 112334556788888888877766555
No 13
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=24.48 E-value=86 Score=25.80 Aligned_cols=59 Identities=19% Similarity=0.246 Sum_probs=36.1
Q ss_pred ccccccC-CCCC--cccccccCCCCCCCCCCCCCCcccccccCCCcchHHHHHHHHHHHcccCCc
Q 021572 17 WFPHSLQ-KTPK--FEFPIFRNPNISNSTSNCNSSKMLLLHRANAAPSLQVAVSEAMNLVQLSQP 78 (310)
Q Consensus 17 ~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 78 (310)
.||...- +-|+ |.-||| +|||..+..-|-+--- ..+=.++-.++..+...+.++...++
T Consensus 58 ~fp~~YP~~PP~v~f~t~i~-HPnV~~~G~iCl~iL~--~~~W~p~~~i~~vl~~i~~ll~~p~~ 119 (155)
T 1wzv_A 58 SFPPEYPFKPPMIKFTTKIY-HPNVDENGQICLPIIS--SENWKPCTKTCQVLEALNVLVNRPNI 119 (155)
T ss_dssp ECCTTTTSSCCEEEESSCCC-BTTBCTTCBCCCGGGC--TTTCCTTCCHHHHHHHHHHHHHSCCS
T ss_pred ECCCCCCCCCCcceeeCCCc-cCcCCCCCeEeecCCC--ccCCCCCCcHHHHHHHHHHHHhCCCC
Confidence 4554432 3444 444775 6999887777865210 13334556788888888877776655
No 14
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=24.32 E-value=98 Score=26.36 Aligned_cols=54 Identities=19% Similarity=0.285 Sum_probs=33.7
Q ss_pred CCCC--cccccccCCCCCCCCCCCCCCcccc----------cccCCCcchHHHHHHHHHHHcccCCc
Q 021572 24 KTPK--FEFPIFRNPNISNSTSNCNSSKMLL----------LHRANAAPSLQVAVSEAMNLVQLSQP 78 (310)
Q Consensus 24 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~a~~~~~~~~~ 78 (310)
+-|+ |.-||| +|||..+..-|-+---.+ ..+=.++-+++..|...+.++...++
T Consensus 70 ~PP~v~f~t~i~-HPnV~~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~ 135 (183)
T 3rz3_A 70 SPPAFRFLTKMW-HPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNT 135 (183)
T ss_dssp SCCEEEESSCCC-CTTBCTTSBBCCTTC--------------CCCCTTCCHHHHHHHHHHHHHSCCC
T ss_pred CCCeeEecCCCc-cCCCCCCCcEehhhcCcccccccccccccCCCCCcCcHHHHHHHHHHHHhCCCC
Confidence 3444 444776 899998888887642110 13445566688888877777766554
No 15
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=21.20 E-value=1.4e+02 Score=26.36 Aligned_cols=51 Identities=25% Similarity=0.406 Sum_probs=33.4
Q ss_pred CCCCcc--cccccCCCCCC-CCCCCCCCcccccccCCCcchHHHHHHHHHHHcccCCc
Q 021572 24 KTPKFE--FPIFRNPNISN-STSNCNSSKMLLLHRANAAPSLQVAVSEAMNLVQLSQP 78 (310)
Q Consensus 24 ~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 78 (310)
+.|+.. -||| +|||+. +..-|-+-- ..+=.++-.++.++...+.++...+|
T Consensus 65 ~PP~V~F~T~i~-HPNI~~~~G~ICL~iL---~~~WsP~~ti~~VL~sI~sLL~~Pnp 118 (215)
T 1tte_A 65 KPPKMQFDTKVY-HPNISSVTGAICLDIL---RNAWSPVITLKSALISLQALLQSPEP 118 (215)
T ss_dssp CCCEEEETTTCC-CSSSCSSSSCCCSSTT---TCCSCTTCCHHHHHHHHHHHHTSCCC
T ss_pred CCCcccccCCCc-cCcCcCCCCEEECccC---CCCCCCcCcHHHHHHHHHHHHhCCCC
Confidence 445443 4665 799998 677786521 13345556788888888877777665
No 16
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=20.69 E-value=1.1e+02 Score=25.24 Aligned_cols=58 Identities=21% Similarity=0.374 Sum_probs=35.8
Q ss_pred ccccccC-CCCC--cccccccCCCCCCCCCCCCCCcccccccCCCcchHHHHHHHHHHHcccCCc
Q 021572 17 WFPHSLQ-KTPK--FEFPIFRNPNISNSTSNCNSSKMLLLHRANAAPSLQVAVSEAMNLVQLSQP 78 (310)
Q Consensus 17 ~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 78 (310)
.||...- +-|+ |.-||| +|||..+..-|-+-- ..+=.++-.++.++...+.++...++
T Consensus 59 ~fp~~YP~~PP~v~f~t~i~-HPnv~~~G~iCl~iL---~~~W~p~~~i~~vl~~i~~ll~~p~~ 119 (155)
T 1jat_A 59 YLPDDYPMEAPKVRFLTKIY-HPNIDRLGRICLDVL---KTNWSPALQIRTVLLSIQALLASPNP 119 (155)
T ss_dssp ECCTTTTTSCCEEEECSCCC-BTTBCTTCCBCCGGG---TTTCCTTCCHHHHHHHHHHHHHSCCT
T ss_pred EcCCCCCCCCCcceeecccc-cCCCCCCCEEEchhh---ccCCCCCCCHHHHHHHHHHHHhCCCC
Confidence 3444432 4454 444665 699997777786421 12344566788888888877776554
No 17
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=20.37 E-value=91 Score=24.81 Aligned_cols=52 Identities=15% Similarity=0.153 Sum_probs=32.1
Q ss_pred CCCCccc--ccccCCCCCCCCCCCCCCcccccccCCCcchHHHHHHHHHHHcccCCc
Q 021572 24 KTPKFEF--PIFRNPNISNSTSNCNSSKMLLLHRANAAPSLQVAVSEAMNLVQLSQP 78 (310)
Q Consensus 24 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 78 (310)
+-|+..| ||.-+|||..+..-|-+-- -.+=.++-+++.++...+.++.+.++
T Consensus 68 ~PP~v~f~t~i~~HPnv~~~G~iCl~iL---~~~W~P~~~i~~vl~si~~ll~~p~~ 121 (125)
T 2fo3_A 68 KPPIVYFLQKPPKHTHVYSNGDICLSLL---GDDYNPSLSISGLVLSIISMLSSAKE 121 (125)
T ss_dssp SCCEEEECSSCCCBTTBCTTSBBCCGGG---TTTCCTTCCHHHHHHHHHHHHC----
T ss_pred CCCEEEEeCCCCCCCcCCCCCEEEchhc---CCCCCCCCcHHHHHHHHHHHHhCccc
Confidence 4566555 5656899988777786521 13344566788888877777765544
Done!