Query 021572
Match_columns 310
No_of_seqs 176 out of 419
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 06:05:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021572.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021572hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pzva_ d.20.1.1 (A:) Ubiquiti 30.4 19 0.0014 27.9 3.6 54 24-78 63-128 (161)
2 d1fusa_ d.1.1.4 (A:) RNase F1 30.2 7.1 0.00052 29.8 0.9 19 15-36 47-65 (106)
3 d1rdsa_ d.1.1.4 (A:) RNase Ms 24.9 14 0.001 28.1 1.7 24 15-41 46-69 (105)
4 d1yh2a1 d.20.1.1 (A:1-154) Ubi 22.4 48 0.0035 25.1 4.6 50 28-78 70-120 (154)
5 d1ayza_ d.20.1.1 (A:) Ubiquiti 22.3 37 0.0027 25.7 3.9 48 27-78 70-117 (153)
6 d1jata_ d.20.1.1 (A:) Ubiquiti 22.1 34 0.0025 26.3 3.6 48 27-78 70-117 (152)
7 d2a4da1 d.20.1.1 (A:82-220) Ub 19.6 36 0.0026 26.0 3.2 52 24-76 71-124 (139)
8 d2a7la1 d.20.1.1 (A:1-117) Ubi 17.7 58 0.0042 23.6 4.0 53 17-72 59-115 (117)
9 d1i7ka_ d.20.1.1 (A:) Ubiquiti 17.1 55 0.004 24.9 3.8 51 24-78 63-115 (146)
10 d2ucza_ d.20.1.1 (A:) Ubiquiti 16.7 61 0.0044 24.8 4.0 54 24-78 66-131 (164)
No 1
>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}
Probab=30.40 E-value=19 Score=27.91 Aligned_cols=54 Identities=20% Similarity=0.249 Sum_probs=32.9
Q ss_pred CCCC--cccccccCCCCCCCCCCCCCCcc----------cccccCCCcchHHHHHHHHHHHcccCCc
Q 021572 24 KTPK--FEFPIFRNPNISNSTSNCNSSKM----------LLLHRANAAPSLQVAVSEAMNLVQLSQP 78 (310)
Q Consensus 24 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 78 (310)
+.|+ |.-||| +|||.....-|-+--- +...+=.++-.+++.+...+.++...++
T Consensus 63 ~pP~v~f~t~i~-HPnI~~~G~vcl~~l~~~~~~~~~~~~~~~~W~p~~~i~~iL~~i~~ll~~p~~ 128 (161)
T d1pzva_ 63 KPPKMKFISEIW-HPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNF 128 (161)
T ss_dssp SCCEEEECSCCC-CTTBCTTSBBCCGGGCCC---------CCSSCCTTCCHHHHHHHHHHHHHSCCC
T ss_pred CCCeEEecCCCC-CcccCCCCccchhhcCCcccccccccccccccCccccHHHHHHHHHHHHhCCCC
Confidence 3454 445776 7999988888854111 1112234556788888777777766444
No 2
>d1fusa_ d.1.1.4 (A:) RNase F1 {Fusarium moniliforme [TaxId: 117187]}
Probab=30.25 E-value=7.1 Score=29.84 Aligned_cols=19 Identities=37% Similarity=0.531 Sum_probs=14.5
Q ss_pred ccccccccCCCCCcccccccCC
Q 021572 15 ALWFPHSLQKTPKFEFPIFRNP 36 (310)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~ 36 (310)
.+||| ...|..||||+++-
T Consensus 47 ~~~F~---~~~~~~EyPi~~~g 65 (106)
T d1fusa_ 47 GFDFP---VDGPYQEFPIKSGG 65 (106)
T ss_dssp CCCCS---SCSCEEEEECCTTS
T ss_pred CcccC---CCCcceEeeEecCC
Confidence 46777 34789999999874
No 3
>d1rdsa_ d.1.1.4 (A:) RNase Ms {Molsin (Aspergillus saitoi) [TaxId: 5063]}
Probab=24.93 E-value=14 Score=28.07 Aligned_cols=24 Identities=21% Similarity=0.516 Sum_probs=17.1
Q ss_pred ccccccccCCCCCcccccccCCCCCCC
Q 021572 15 ALWFPHSLQKTPKFEFPIFRNPNISNS 41 (310)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (310)
.++||- +.|..||||+++..+-+.
T Consensus 46 g~~f~~---~~~~~EfPi~~~g~~y~G 69 (105)
T d1rdsa_ 46 GFDFPV---SGTYYEYPIMSDYDVYTG 69 (105)
T ss_dssp CCCCSS---CSCEEEEEBCTTCCBCCS
T ss_pred CCccCC---CCcceEeeeEccCccccC
Confidence 345663 468899999999766554
No 4
>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]}
Probab=22.37 E-value=48 Score=25.08 Aligned_cols=50 Identities=20% Similarity=0.305 Sum_probs=31.0
Q ss_pred cccccccCCCCCCCCCCCCCCcccc-cccCCCcchHHHHHHHHHHHcccCCc
Q 021572 28 FEFPIFRNPNISNSTSNCNSSKMLL-LHRANAAPSLQVAVSEAMNLVQLSQP 78 (310)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~ 78 (310)
|.-||| +|||..++.-|.+---.. ...-.++-+++..+.....++...++
T Consensus 70 f~t~i~-HPnV~~~g~icl~~l~~~~~~~w~p~~~i~~il~~i~~ll~~p~~ 120 (154)
T d1yh2a1 70 FLTPIY-HPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNP 120 (154)
T ss_dssp ESSCCC-BTTBCTTCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCT
T ss_pred ccCCCC-cCCcCCCCCcccccccCCccccCCccccHHHHHHHHHHHhccCCC
Confidence 444666 799998888886422111 11235566778888777777765544
No 5
>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]}
Probab=22.29 E-value=37 Score=25.67 Aligned_cols=48 Identities=21% Similarity=0.357 Sum_probs=30.9
Q ss_pred CcccccccCCCCCCCCCCCCCCcccccccCCCcchHHHHHHHHHHHcccCCc
Q 021572 27 KFEFPIFRNPNISNSTSNCNSSKMLLLHRANAAPSLQVAVSEAMNLVQLSQP 78 (310)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 78 (310)
+|.-||| +|||.....-|-+ +.. ..-.+.-.+++.+...+.++...++
T Consensus 70 ~f~t~i~-HPnI~~~G~icl~--~l~-~~W~p~~~i~~il~~i~~ll~~p~~ 117 (153)
T d1ayza_ 70 KFLSEMF-HPNVYANGEICLD--ILQ-NRWTPTYDVASILTSIQSLFNDPNP 117 (153)
T ss_dssp EESSCCC-CTTBCTTSBBCCG--GGT-TTCCTTCCHHHHHHHHHHHHTCCCC
T ss_pred eeccCCC-ccCCCCCCccccc--ccc-ccCCCcCcHHHHHHHHHHHHcCCCC
Confidence 4555776 7999887777864 222 2233456788888877777765554
No 6
>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}
Probab=22.15 E-value=34 Score=26.30 Aligned_cols=48 Identities=21% Similarity=0.325 Sum_probs=30.8
Q ss_pred CcccccccCCCCCCCCCCCCCCcccccccCCCcchHHHHHHHHHHHcccCCc
Q 021572 27 KFEFPIFRNPNISNSTSNCNSSKMLLLHRANAAPSLQVAVSEAMNLVQLSQP 78 (310)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 78 (310)
+|.-||| +|||.+...-|-+- +...-.+.-.+++.+...+.++...++
T Consensus 70 ~F~t~i~-HPnI~~~G~icl~~---~~~~W~p~~~i~~il~~i~~ll~~P~~ 117 (152)
T d1jata_ 70 RFLTKIY-HPNIDRLGRICLDV---LKTNWSPALQIRTVLLSIQALLASPNP 117 (152)
T ss_dssp EECSCCC-BTTBCTTCCBCCGG---GTTTCCTTCCHHHHHHHHHHHHHSCCT
T ss_pred EecCCCC-CCcCCCCCCeeecc---ccccCCchhHHHHHHHHHHHHHcCCCC
Confidence 4555776 79998877667441 122234556688888888887776544
No 7
>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}
Probab=19.58 E-value=36 Score=26.00 Aligned_cols=52 Identities=17% Similarity=0.229 Sum_probs=33.1
Q ss_pred CCCCccc--ccccCCCCCCCCCCCCCCcccccccCCCcchHHHHHHHHHHHcccC
Q 021572 24 KTPKFEF--PIFRNPNISNSTSNCNSSKMLLLHRANAAPSLQVAVSEAMNLVQLS 76 (310)
Q Consensus 24 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 76 (310)
+.|+..| ||| .|||..++..|....+..+.+=.++-+++..+..-+.++.+.
T Consensus 71 ~pP~v~F~t~i~-HpnV~~~~g~~~~~~l~~l~~Wsp~~ti~~iL~~i~slL~~p 124 (139)
T d2a4da1 71 APPFVRFVTKIN-MNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSK 124 (139)
T ss_dssp SCCEEEESBCCC-CTTBCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHHTST
T ss_pred CCCEEEEecCcc-cccCcCCCCEEcceecCcccCCCccCcHHHHHHHHHHHHCCC
Confidence 3455444 775 788887776666555544444455667888887777666543
No 8
>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.72 E-value=58 Score=23.62 Aligned_cols=53 Identities=19% Similarity=0.283 Sum_probs=30.5
Q ss_pred cccccc-CCCCCccc--ccc-cCCCCCCCCCCCCCCcccccccCCCcchHHHHHHHHHHH
Q 021572 17 WFPHSL-QKTPKFEF--PIF-RNPNISNSTSNCNSSKMLLLHRANAAPSLQVAVSEAMNL 72 (310)
Q Consensus 17 ~~~~~~-~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 72 (310)
.||... .+.||..| ++. -+||+.....-|-+ +. ..+=.++-.++..+...+.+
T Consensus 59 ~fp~~YP~~pP~v~F~t~~~~~Hpnv~~~G~iCl~--~l-~~~Wsp~~ti~~vl~~i~~l 115 (117)
T d2a7la1 59 KFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLS--IL-TEDWSPALSVQSVCLSIISM 115 (117)
T ss_dssp EECTTTTTSCCEEEEESSCCCCBTTBCTTCBBCCG--GG-TTTCCTTSCHHHHHHHHHHH
T ss_pred ecCcccccCCCEEEEeCCCccccccCcCCCeEEee--cC-cCCCCCcCcHHHHHHHHHHH
Confidence 444333 45677666 664 38999888888864 22 12233455566666655544
No 9
>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]}
Probab=17.09 E-value=55 Score=24.86 Aligned_cols=51 Identities=16% Similarity=0.260 Sum_probs=33.2
Q ss_pred CCCC--cccccccCCCCCCCCCCCCCCcccccccCCCcchHHHHHHHHHHHcccCCc
Q 021572 24 KTPK--FEFPIFRNPNISNSTSNCNSSKMLLLHRANAAPSLQVAVSEAMNLVQLSQP 78 (310)
Q Consensus 24 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 78 (310)
+.|+ |.-||| +|||.+...-|-+ +.. .+-.++-+++..+...+.++...++
T Consensus 63 ~pP~v~f~t~i~-HPnV~~~G~icl~--~l~-~~W~p~~~i~~il~~i~~ll~~p~~ 115 (146)
T d1i7ka_ 63 NAPTVKFLTPCY-HPNVDTQGNISLD--ILK-EKWSALYDVRTILLSIQSLLGEPNI 115 (146)
T ss_dssp SCCEEEESSCCC-STTBCTTCBBCCG--GGT-TTCCTTCCHHHHHHHHHHHHHSCCT
T ss_pred CCceeeecCCCC-cccCCCCCccccc--ccc-ccCCCCcCHHHHHHHHHHHHhCCCC
Confidence 4454 444777 6999988888864 111 3344556788888887777765544
No 10
>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}
Probab=16.73 E-value=61 Score=24.81 Aligned_cols=54 Identities=20% Similarity=0.229 Sum_probs=33.2
Q ss_pred CCCCcc--cccccCCCCCCCCCCCCCCccc----cc------ccCCCcchHHHHHHHHHHHcccCCc
Q 021572 24 KTPKFE--FPIFRNPNISNSTSNCNSSKML----LL------HRANAAPSLQVAVSEAMNLVQLSQP 78 (310)
Q Consensus 24 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~------~~~~~~~~~~~~~~~a~~~~~~~~~ 78 (310)
+.|+.. -||| +|||...+.-|-+---. .. .+=.++-.+++.+...+.++...++
T Consensus 66 ~pP~v~f~t~i~-HPnv~~~G~vCl~il~~~~~~~~~~~~~~~~w~p~~ti~~il~~i~~ll~~p~~ 131 (164)
T d2ucza_ 66 SPPKLTFTPSIL-HPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNI 131 (164)
T ss_dssp SCCEEEESSCCS-CTTBCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCG
T ss_pred CCCeEEeecCce-eceEcCCCCeeeccccCccccccccccccccCCccccHHHHHHHHHHHHhCCCC
Confidence 455544 4666 99999988888542111 00 1224456688888888877776554
Done!