BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021574
(310 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GJH|A Chain A, Crystal Structure Of The Traf Domain Of Traf5
pdb|4GJH|B Chain B, Crystal Structure Of The Traf Domain Of Traf5
pdb|4GJH|C Chain C, Crystal Structure Of The Traf Domain Of Traf5
Length = 178
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 64/156 (41%), Gaps = 21/156 (13%)
Query: 169 MEKFTYSSKYVWKVENFSKLDTRYEE-------SQVFGAGNHKWKIVL--YPRGNGCGDG 219
+E YS K +WKV ++ E SQ F +++ Y G+G G G
Sbjct: 17 LEGACYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSGKG 76
Query: 220 DHLSLYLALGDSTVDGI---KVYAEYTLRILDQLGAKHKSLQAAK-----DWFQSP---- 267
HLSLY + D + TL +LDQ G K+ ++ K F+ P
Sbjct: 77 THLSLYFVVMRGEFDSLLQWPFRQRVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEM 136
Query: 268 NLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTV 303
N+ G RF+S S L ++ +D ++ V +
Sbjct: 137 NIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDL 172
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 16/109 (14%)
Query: 51 GYKWKLVLYPNGNESKNVKDHISLYLAMADTNSLNFGLEVYAVFR----LFLLDQNQDNY 106
GY+ Y NG+ S H+SLY + F + FR L LLDQ+
Sbjct: 59 GYRLCARAYLNGDGSGK-GTHLSLYFVVMRGE---FDSLLQWPFRQRVTLMLLDQSGKKN 114
Query: 107 LVVQNAKE-------RRFNG-LKLEWGFDQFISHKAFKEASNGYLVEDT 147
+V+ K +R +G + + G +F+SH + + N Y+ +DT
Sbjct: 115 HIVETFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDT 163
>pdb|1CA9|A Chain A, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Peptide From Tnf-R2
pdb|1CA9|B Chain B, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Peptide From Tnf-R2
pdb|1CA9|C Chain C, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Peptide From Tnf-R2
pdb|1CA9|D Chain D, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Peptide From Tnf-R2
pdb|1CA9|E Chain E, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Peptide From Tnf-R2
pdb|1CA9|F Chain F, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Peptide From Tnf-R2
Length = 192
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 75/179 (41%), Gaps = 34/179 (18%)
Query: 158 ERNIG---------KGECLSMEKFTYSSKYVWKVENFSKLDTRYEE---------SQVFG 199
ER+IG + + L ME TY ++WK+ +F++ R E S F
Sbjct: 16 ERSIGLKDLAMADLEQKVLEMEASTYDGVFIWKISDFAR--KRQEAVAGRIPAIFSPAFY 73
Query: 200 AGNHKWKIVL--YPRGNGCGDGDHLSLYLALGDSTVDGIKVYA---EYTLRILDQLGAKH 254
+ +K+ L Y G+G G G HLSL+ + D + + + TL +LDQ +H
Sbjct: 74 TSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREH 133
Query: 255 K----SLQAAKDWFQSP----NLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLG 305
FQ P N+ G F S++ + ++ +D ++A V + G
Sbjct: 134 VIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAKNS-YVRDDAIFIKAIVDLTG 191
>pdb|1CZZ|A Chain A, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 17-Residue Cd40 Peptide
pdb|1CZZ|B Chain B, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 17-Residue Cd40 Peptide
pdb|1CZZ|C Chain C, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 17-Residue Cd40 Peptide
Length = 187
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 74/179 (41%), Gaps = 34/179 (18%)
Query: 158 ERNIG---------KGECLSMEKFTYSSKYVWKVENFSKLDTRYEE---------SQVFG 199
ER+IG + + L ME TY ++WK+ +F + R E S F
Sbjct: 11 ERSIGLKDLAMADLEQKVLEMEASTYDGVFIWKISDFPR--KRQEAVAGRIPAIFSPAFY 68
Query: 200 AGNHKWKIVL--YPRGNGCGDGDHLSLYLALGDSTVDGIKVYA---EYTLRILDQLGAKH 254
+ +K+ L Y G+G G G HLSL+ + D + + + TL +LDQ +H
Sbjct: 69 TSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREH 128
Query: 255 K----SLQAAKDWFQSP----NLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLG 305
FQ P N+ G F S++ + ++ +D ++A V + G
Sbjct: 129 VIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAKNS-YVRDDAIFIKAIVDLTG 186
>pdb|1CA4|A Chain A, Structure Of Tnf Receptor Associated Factor 2 (Traf2)
pdb|1CA4|B Chain B, Structure Of Tnf Receptor Associated Factor 2 (Traf2)
pdb|1CA4|C Chain C, Structure Of Tnf Receptor Associated Factor 2 (Traf2)
pdb|1CA4|D Chain D, Structure Of Tnf Receptor Associated Factor 2 (Traf2)
pdb|1CA4|E Chain E, Structure Of Tnf Receptor Associated Factor 2 (Traf2)
pdb|1CA4|F Chain F, Structure Of Tnf Receptor Associated Factor 2 (Traf2)
pdb|1D00|A Chain A, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 5-Residue Cd40 Peptide
pdb|1D00|B Chain B, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 5-Residue Cd40 Peptide
pdb|1D00|C Chain C, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 5-Residue Cd40 Peptide
pdb|1D00|D Chain D, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 5-Residue Cd40 Peptide
pdb|1D00|E Chain E, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 5-Residue Cd40 Peptide
pdb|1D00|F Chain F, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 5-Residue Cd40 Peptide
pdb|1D00|G Chain G, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 5-Residue Cd40 Peptide
pdb|1D00|H Chain H, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 5-Residue Cd40 Peptide
pdb|1D0J|A Chain A, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A M4-1bb Peptide
pdb|1D0J|B Chain B, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A M4-1bb Peptide
pdb|1D0J|C Chain C, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A M4-1bb Peptide
pdb|1D0J|D Chain D, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A M4-1bb Peptide
pdb|1D0J|E Chain E, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A M4-1bb Peptide
pdb|1D0J|F Chain F, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A M4-1bb Peptide
Length = 168
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 69/163 (42%), Gaps = 25/163 (15%)
Query: 165 ECLSMEKFTYSSKYVWKVENFSKLDTRYEE---------SQVFGAGNHKWKIVL--YPRG 213
+ L ME TY ++WK+ +F++ R E S F + +K+ L Y G
Sbjct: 8 KVLEMEASTYDGVFIWKISDFAR--KRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNG 65
Query: 214 NGCGDGDHLSLYLALGDSTVDGIKVYA---EYTLRILDQLGAKHK----SLQAAKDWFQS 266
+G G G HLSL+ + D + + + TL +LDQ +H FQ
Sbjct: 66 DGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQR 125
Query: 267 P----NLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLG 305
P N+ G F S++ + ++ +D ++A V + G
Sbjct: 126 PVNDMNIASGCPLFCPVSKMEAKNS-YVRDDAIFIKAIVDLTG 167
>pdb|1CZY|A Chain A, Crystal Structure Of The Complex Between The Traf Domain
Of Human Traf2 And An Lmp1 Binding Peptide
pdb|1CZY|B Chain B, Crystal Structure Of The Complex Between The Traf Domain
Of Human Traf2 And An Lmp1 Binding Peptide
pdb|1CZY|C Chain C, Crystal Structure Of The Complex Between The Traf Domain
Of Human Traf2 And An Lmp1 Binding Peptide
pdb|1D0A|A Chain A, Structure Of Tnf Receptor Associated Factor 2 (Traf2) In
Complex With A Human Ox40 Peptide
pdb|1D0A|B Chain B, Structure Of Tnf Receptor Associated Factor 2 (Traf2) In
Complex With A Human Ox40 Peptide
pdb|1D0A|C Chain C, Structure Of Tnf Receptor Associated Factor 2 (Traf2) In
Complex With A Human Ox40 Peptide
pdb|1D0A|D Chain D, Structure Of Tnf Receptor Associated Factor 2 (Traf2) In
Complex With A Human Ox40 Peptide
pdb|1D0A|E Chain E, Structure Of Tnf Receptor Associated Factor 2 (Traf2) In
Complex With A Human Ox40 Peptide
pdb|1D0A|F Chain F, Structure Of Tnf Receptor Associated Factor 2 (Traf2) In
Complex With A Human Ox40 Peptide
pdb|1D01|A Chain A, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Human Cd30 Peptide
pdb|1D01|B Chain B, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Human Cd30 Peptide
pdb|1D01|C Chain C, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Human Cd30 Peptide
pdb|1D01|D Chain D, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Human Cd30 Peptide
pdb|1D01|E Chain E, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Human Cd30 Peptide
pdb|1D01|F Chain F, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Human Cd30 Peptide
Length = 168
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 68/163 (41%), Gaps = 25/163 (15%)
Query: 165 ECLSMEKFTYSSKYVWKVENFSKLDTRYEE---------SQVFGAGNHKWKIVL--YPRG 213
+ L ME TY ++WK+ +F + R E S F + +K+ L Y G
Sbjct: 8 KVLEMEASTYDGVFIWKISDFPR--KRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNG 65
Query: 214 NGCGDGDHLSLYLALGDSTVDGIKVYA---EYTLRILDQLGAKHK----SLQAAKDWFQS 266
+G G G HLSL+ + D + + + TL +LDQ +H FQ
Sbjct: 66 DGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQR 125
Query: 267 P----NLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLG 305
P N+ G F S++ + ++ +D ++A V + G
Sbjct: 126 PVNDMNIASGCPLFCPVSKMEAKNS-YVRDDAIFIKAIVDLTG 167
>pdb|2CR2|A Chain A, Solution Structure Of N-Terminal Domain Of Speckle-Type
Poz Protein
Length = 159
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 14/153 (9%)
Query: 14 STSHVSPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGG---YKWKLVLYPNG--NESKNV 68
S+ V Y+ I +FSF E+ EV +S+ F +G KW L + P G ESK+
Sbjct: 5 SSGKVVKFSYMWTINNFSFCREEMGEV-IKSSTFSSGANDKLKWCLRVNPKGLDEESKDY 63
Query: 69 KDHISLYLAMADTNSLNFGLEVYAVFRLFLLDQNQDNYLVVQNAKERRFNGLKLEWGFDQ 128
L ++ + EV A F+ +L+ + +++ + RF K +WGF +
Sbjct: 64 LSLYLLLVSCPKS-------EVRAKFKFSILNAKGEETKAMESQRAYRFVQGK-DWGFKK 115
Query: 129 FISHKAFKEASNGYLVEDTCVFGAEVFVKERNI 161
FI + +NG L +D EV V + ++
Sbjct: 116 FIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSV 148
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 15/145 (10%)
Query: 178 YVWKVENFSKLDTRYEE---SQVFGAGNH---KWKIVLYPRGNGCGDGDHLSLYLALGDS 231
Y+W + NFS E S F +G + KW + + P+G D+LSLYL L
Sbjct: 14 YMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLL--V 71
Query: 232 TVDGIKVYAEYTLRILDQLGAKHKSLQAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLV 291
+ +V A++ IL+ G + K++++ + + WG+ +FI L G L
Sbjct: 72 SCPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLP 131
Query: 292 ND-------VCVVEAEVTVLGTSEP 309
+D V VV+ V + G S P
Sbjct: 132 DDKLTLFCEVSVVQDSVNISGQSGP 156
>pdb|3IVB|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Architectures Of Btb-Cul3 Ubiquitin Ligases: Spopmath-
Macroh2asbcpep1
pdb|3IVQ|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmath-Cisbc2
pdb|3IVQ|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmath-Cisbc2
pdb|3IVV|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmath-Pucsbc1_pep1
Length = 145
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 14/147 (9%)
Query: 15 TSHVSPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGG---YKWKLVLYPNG--NESKNVK 69
+ V Y+ I +FSF E+ EV +S+ F +G KW L + P G ESK+
Sbjct: 5 SGKVVKFSYMWTINNFSFCREEMGEV-IKSSTFSSGANDKLKWCLRVNPKGLDEESKDYL 63
Query: 70 DHISLYLAMADTNSLNFGLEVYAVFRLFLLDQNQDNYLVVQNAKERRFNGLKLEWGFDQF 129
L ++ + EV A F+ +L+ + +++ + RF K +WGF +F
Sbjct: 64 SLYLLLVSCPKS-------EVRAKFKFSILNAKGEETKAMESQRAYRFVQGK-DWGFKKF 115
Query: 130 ISHKAFKEASNGYLVEDTCVFGAEVFV 156
I + +NG L +D EV V
Sbjct: 116 IRRDFLLDEANGLLPDDKLTLFCEVSV 142
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 8/133 (6%)
Query: 178 YVWKVENFSKLDTRYEE---SQVFGAGNH---KWKIVLYPRGNGCGDGDHLSLYLALGDS 231
Y+W + NFS E S F +G + KW + + P+G D+LSLYL L
Sbjct: 13 YMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLL--V 70
Query: 232 TVDGIKVYAEYTLRILDQLGAKHKSLQAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLV 291
+ +V A++ IL+ G + K++++ + + WG+ +FI L G L
Sbjct: 71 SCPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLP 130
Query: 292 NDVCVVEAEVTVL 304
+D + EV+V+
Sbjct: 131 DDKLTLFCEVSVV 143
>pdb|3HQH|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Macroh2asbcpep1
pdb|3HQL|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin
Ligases:spopmathx-Pucsbc1_pep2
pdb|3HQL|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin
Ligases:spopmathx-Pucsbc1_pep2
pdb|3HQM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Cisbc2
pdb|3HQM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Cisbc2
pdb|3HSV|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Macroh2asbcpep2
pdb|3HSV|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Macroh2asbcpep2
Length = 145
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 14/147 (9%)
Query: 15 TSHVSPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGG---YKWKLVLYPNG--NESKNVK 69
+ V Y+ I +FSF E+ EV +S+ F +G KW L + P G ESK+
Sbjct: 5 SGKVVKFSYMWTINNFSFCREEMGEV-IKSSTFSSGANDKLKWCLRVNPKGLDEESKDYL 63
Query: 70 DHISLYLAMADTNSLNFGLEVYAVFRLFLLDQNQDNYLVVQNAKERRFNGLKLEWGFDQF 129
L ++ + EV A F+ +L+ + +++ + RF K +WGF +F
Sbjct: 64 SLYLLLVSCPKS-------EVRAKFKFSILNAKGEETKAMESQRAYRFVQGK-DWGFKKF 115
Query: 130 ISHKAFKEASNGYLVEDTCVFGAEVFV 156
I + +NG L +D EV V
Sbjct: 116 IRRGFLLDEANGLLPDDKLTLFCEVSV 142
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 8/133 (6%)
Query: 178 YVWKVENFSKLDTRYEE---SQVFGAGNH---KWKIVLYPRGNGCGDGDHLSLYLALGDS 231
Y+W + NFS E S F +G + KW + + P+G D+LSLYL L
Sbjct: 13 YMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLL--V 70
Query: 232 TVDGIKVYAEYTLRILDQLGAKHKSLQAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLV 291
+ +V A++ IL+ G + K++++ + + WG+ +FI L G L
Sbjct: 71 SCPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRGFLLDEANGLLP 130
Query: 292 NDVCVVEAEVTVL 304
+D + EV+V+
Sbjct: 131 DDKLTLFCEVSVV 143
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 14/151 (9%)
Query: 16 SHVSPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGG---YKWKLVLYPNG--NESKNVKD 70
S V Y+ I +FSF E+ EV +S+ F +G KW L + P G ESK+
Sbjct: 2 SKVVKFSYMWTINNFSFCREEMGEV-IKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLS 60
Query: 71 HISLYLAMADTNSLNFGLEVYAVFRLFLLDQNQDNYLVVQNAKERRFNGLKLEWGFDQFI 130
L ++ + EV A F+ +L+ + +++ + RF K +WGF +FI
Sbjct: 61 LYLLLVSCPKS-------EVRAKFKFSILNAKGEETKAMESQRAYRFVQGK-DWGFKKFI 112
Query: 131 SHKAFKEASNGYLVEDTCVFGAEVFVKERNI 161
+ +NG L +D EV V + ++
Sbjct: 113 RRGFLLDEANGLLPDDKLTLFCEVSVVQDSV 143
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 8/136 (5%)
Query: 178 YVWKVENFSKLDTRYEE---SQVFGAGNH---KWKIVLYPRGNGCGDGDHLSLYLALGDS 231
Y+W + NFS E S F +G + KW + + P+G D+LSLYL L
Sbjct: 9 YMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLL--V 66
Query: 232 TVDGIKVYAEYTLRILDQLGAKHKSLQAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLV 291
+ +V A++ IL+ G + K++++ + + WG+ +FI L G L
Sbjct: 67 SCPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRGFLLDEANGLLP 126
Query: 292 NDVCVVEAEVTVLGTS 307
+D + EV+V+ S
Sbjct: 127 DDKLTLFCEVSVVQDS 142
>pdb|1QSC|A Chain A, Crystal Structure Of The Traf Domain Of Traf2 In A Complex
With A Peptide From The Cd40 Receptor
pdb|1QSC|B Chain B, Crystal Structure Of The Traf Domain Of Traf2 In A Complex
With A Peptide From The Cd40 Receptor
pdb|1QSC|C Chain C, Crystal Structure Of The Traf Domain Of Traf2 In A Complex
With A Peptide From The Cd40 Receptor
Length = 191
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 72/179 (40%), Gaps = 34/179 (18%)
Query: 158 ERNIG---------KGECLSMEKFTYSSKYVWKVENFSKLDTRYEE---------SQVFG 199
ER+IG + + L E TY ++WK+ +F++ R E S F
Sbjct: 15 ERSIGLKDLAXADLEQKVLEXEASTYDGVFIWKISDFAR--KRQEAVAGRIPAIFSPAFY 72
Query: 200 AGNHKWKIVL--YPRGNGCGDGDHLSLYLALGDSTVDGIKVYA---EYTLRILDQLGAKH 254
+ +K L Y G+G G G HLSL+ + D + + + TL +LDQ +H
Sbjct: 73 TSRYGYKXCLRIYLNGDGTGRGTHLSLFFVVXKGPNDALLRWPFNQKVTLXLLDQNNREH 132
Query: 255 K----SLQAAKDWFQSP----NLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLG 305
FQ P N+ G F S+ + ++ +D ++A V + G
Sbjct: 133 VIDAFRPDVTSSSFQRPVNDXNIASGCPLFCPVSKXEAKNS-YVRDDAIFIKAIVDLTG 190
>pdb|1F3V|B Chain B, Crystal Structure Of The Complex Between The N-Terminal
Domain Of Tradd And The Traf Domain Of Traf2
Length = 171
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 65/163 (39%), Gaps = 25/163 (15%)
Query: 165 ECLSMEKFTYSSKYVWKVENFSKLDTRYEE---------SQVFGAGNHKWKIVL--YPRG 213
+ L E TY ++WK+ +F + R E S F + +K L Y G
Sbjct: 11 KVLEXEASTYDGVFIWKISDFPR--KRQEAVAGRIPAIFSPAFYTSRYGYKXCLRIYLNG 68
Query: 214 NGCGDGDHLSLYLALGDSTVDGIKVYA---EYTLRILDQLGAKHK----SLQAAKDWFQS 266
+G G G HLSL+ + D + + + TL +LDQ +H FQ
Sbjct: 69 DGTGRGTHLSLFFVVXKGPNDALLRWPFNQKVTLXLLDQNNREHVIDAFRPDVTSSSFQR 128
Query: 267 P----NLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLG 305
P N+ G F S+ + ++ +D ++A V + G
Sbjct: 129 PVNDXNIASGCPLFCPVSKXEAKNS-YVRDDAIFIKAIVDLTG 170
>pdb|2F1W|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Length = 158
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 64/148 (43%), Gaps = 19/148 (12%)
Query: 15 TSHVSPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNVKDHISL 74
TS S A + ++ FS L+E + S WK+++ P + + +
Sbjct: 15 TSWRSEATFQFTVERFSRLSESVL-----SPPCFVRNLPWKIMVMPRFYPDRPHQKSVGF 69
Query: 75 YLAM-ADTNSLNFGLEVYAVFRLFLLDQNQDNYLVVQNAKERRFNGL----KLEWGFDQF 129
+L A+++S ++ AV ++ NY + + RR + L + +WGF F
Sbjct: 70 FLQCNAESDSTSWSCHAQAVLKII-------NYRDDEKSFSRRISHLFFHKENDWGFSNF 122
Query: 130 ISHKAFKEASNGYLVEDTCVFGAEVFVK 157
++ + G++ +D F EVFV+
Sbjct: 123 MAWSEVTDPEKGFIDDDKVTF--EVFVQ 148
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 13/127 (10%)
Query: 182 VENFSKLDTRYEESQVFGAGNHKWKIVLYPRGNGCGDGDH---LSLYL---ALGDSTVDG 235
VE FS+L F N WKI++ PR D H + +L A DST
Sbjct: 27 VERFSRLSESVLSPPCF-VRNLPWKIMVMPRFYP--DRPHQKSVGFFLQCNAESDST--S 81
Query: 236 IKVYAEYTLRILD-QLGAKHKSLQAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLVNDV 294
+A+ L+I++ + K S + + +F N WG++ F+++SE+ P GF+ +D
Sbjct: 82 WSCHAQAVLKIINYRDDEKSFSRRISHLFFHKEN-DWGFSNFMAWSEVTDPEKGFIDDDK 140
Query: 295 CVVEAEV 301
E V
Sbjct: 141 VTFEVFV 147
>pdb|1YY6|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With An Ebna1 Peptide
pdb|1YZE|A Chain A, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|1YZE|B Chain B, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|1YZE|C Chain C, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|2FOJ|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With P53 Peptide 364-367
pdb|2FOO|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With P53 Peptide 359-362
pdb|2FOP|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With Mdm2 Peptide 147-150
pdb|3MQR|A Chain A, Crystal Structure Of The Usp7:hdmx(Ahss) Complex
pdb|3MQS|C Chain C, Crystal Structure Of The Usp7:hdm2(Psts) Complex
Length = 155
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 64/148 (43%), Gaps = 19/148 (12%)
Query: 15 TSHVSPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNVKDHISL 74
TS S A + ++ FS L+E + S WK+++ P + + +
Sbjct: 13 TSWRSEATFQFTVERFSRLSESVL-----SPPCFVRNLPWKIMVMPRFYPDRPHQKSVGF 67
Query: 75 YLAM-ADTNSLNFGLEVYAVFRLFLLDQNQDNYLVVQNAKERRFNGL----KLEWGFDQF 129
+L A+++S ++ AV ++ NY + + RR + L + +WGF F
Sbjct: 68 FLQCNAESDSTSWSCHAQAVLKII-------NYRDDEKSFSRRISHLFFHKENDWGFSNF 120
Query: 130 ISHKAFKEASNGYLVEDTCVFGAEVFVK 157
++ + G++ +D F EVFV+
Sbjct: 121 MAWSEVTDPEKGFIDDDKVTF--EVFVQ 146
Score = 35.0 bits (79), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 13/127 (10%)
Query: 182 VENFSKLDTRYEESQVFGAGNHKWKIVLYPRGNGCGDGDH---LSLYL---ALGDSTVDG 235
VE FS+L F N WKI++ PR D H + +L A DST
Sbjct: 25 VERFSRLSESVLSPPCF-VRNLPWKIMVMPRFYP--DRPHQKSVGFFLQCNAESDST--S 79
Query: 236 IKVYAEYTLRILD-QLGAKHKSLQAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLVNDV 294
+A+ L+I++ + K S + + +F N WG++ F+++SE+ P GF+ +D
Sbjct: 80 WSCHAQAVLKIINYRDDEKSFSRRISHLFFHKEN-DWGFSNFMAWSEVTDPEKGFIDDDK 138
Query: 295 CVVEAEV 301
E V
Sbjct: 139 VTFEVFV 145
>pdb|2F1Y|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A Mdm2 Peptide
Length = 159
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 64/148 (43%), Gaps = 19/148 (12%)
Query: 15 TSHVSPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNVKDHISL 74
TS S A + ++ FS L+E + S WK+++ P + + +
Sbjct: 15 TSWRSEATFQFTVERFSRLSESVL-----SPPCFVRNLPWKIMVMPRFYPDRPHQKSVGF 69
Query: 75 YLAM-ADTNSLNFGLEVYAVFRLFLLDQNQDNYLVVQNAKERRFNGL----KLEWGFDQF 129
+L A+++S ++ AV ++ NY + + RR + L + +WGF F
Sbjct: 70 FLQCNAESDSTSWSCHAQAVLKII-------NYRDDEKSFSRRISHLFFHKENDWGFSNF 122
Query: 130 ISHKAFKEASNGYLVEDTCVFGAEVFVK 157
++ + G++ +D F EVFV+
Sbjct: 123 MAWSEVTDPEKGFIDDDKVTF--EVFVQ 148
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 13/130 (10%)
Query: 176 SKYVWKVENFSKLDTRYEESQVFGAGNHKWKIVLYPRGNGCGDGDH---LSLYL---ALG 229
+ + + VE FS+L F N WKI++ PR D H + +L A
Sbjct: 21 ATFQFTVERFSRLSESVLSPPCF-VRNLPWKIMVMPRFYP--DRPHQKSVGFFLQCNAES 77
Query: 230 DSTVDGIKVYAEYTLRILD-QLGAKHKSLQAAKDWFQSPNLTWGWTRFISFSELNKPGTG 288
DST +A+ L+I++ + K S + + +F N WG++ F+++SE+ P G
Sbjct: 78 DST--SWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKEN-DWGFSNFMAWSEVTDPEKG 134
Query: 289 FLVNDVCVVE 298
F+ +D E
Sbjct: 135 FIDDDKVTFE 144
>pdb|1RF3|A Chain A, Structurally Distinct Recognition Motifs In Lymphotoxin-B
Receptor And Cd40 For Traf-Mediated Signaling
Length = 200
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 73/167 (43%), Gaps = 31/167 (18%)
Query: 169 MEKFTYSSKYVWKVENFSKLDTRYEE----------SQVFGAGNHKWKIV--LYPRGNGC 216
+E +Y+ +WK+ ++ + R +E SQ F G +K+ +Y G+G
Sbjct: 33 LETASYNGVLIWKIRDYKR---RKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGM 89
Query: 217 GDGDHLSLYLALGDSTVDGIKVYA---EYTLRILDQLGAKHKSLQAA------KDWFQSP 267
G G HLSL+ + D + + + TL ++DQ G+ + L A F+ P
Sbjct: 90 GKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQ-GSSRRHLGDAFKPDPNSSSFKKP 148
Query: 268 ----NLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLGTSEPL 310
N+ G F++ + L GT ++ +D ++ V +PL
Sbjct: 149 TGEMNIASGCPVFVAQTVLEN-GT-YIKDDTIFIKVIVDTSDLPDPL 193
>pdb|2F1X|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A P53 Peptide
pdb|2F1X|B Chain B, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A P53 Peptide
Length = 161
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 65/153 (42%), Gaps = 19/153 (12%)
Query: 15 TSHVSPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNVKDHISL 74
TS S A + ++ FS L+E + S WK+++ P + + +
Sbjct: 15 TSWRSEATFQFTVERFSRLSESVL-----SPPCFVRNLPWKIMVMPRFYPDRPHQKSVGF 69
Query: 75 YLAM-ADTNSLNFGLEVYAVFRLFLLDQNQDNYLVVQNAKERRFNGL----KLEWGFDQF 129
+L A+++S ++ AV ++ NY + + RR + L + +WGF F
Sbjct: 70 FLQCNAESDSTSWSCHAQAVLKII-------NYRDDEKSFSRRISHLFFHKENDWGFSNF 122
Query: 130 ISHKAFKEASNGYLVEDTCVFGAEVFVKERNIG 162
++ + G++ +D F EVFV+ G
Sbjct: 123 MAWSEVTDPEKGFIDDDKVTF--EVFVQADAPG 153
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 13/128 (10%)
Query: 178 YVWKVENFSKLDTRYEESQVFGAGNHKWKIVLYPRGNGCGDGDH---LSLYL---ALGDS 231
+ + VE FS+L F N WKI++ PR D H + +L A DS
Sbjct: 23 FQFTVERFSRLSESVLSPPCF-VRNLPWKIMVMPRFYP--DRPHQKSVGFFLQCNAESDS 79
Query: 232 TVDGIKVYAEYTLRILD-QLGAKHKSLQAAKDWFQSPNLTWGWTRFISFSELNKPGTGFL 290
T +A+ L+I++ + K S + + +F N WG++ F+++SE+ P GF+
Sbjct: 80 T--SWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKEN-DWGFSNFMAWSEVTDPEKGFI 136
Query: 291 VNDVCVVE 298
+D E
Sbjct: 137 DDDKVTFE 144
>pdb|2XXN|A Chain A, Structure Of The Virf4-Hausp Traf Domain Complex
Length = 143
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 63/148 (42%), Gaps = 19/148 (12%)
Query: 15 TSHVSPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNVKDHISL 74
TS S A + ++ FS L+E + S WK+++ P + + +
Sbjct: 1 TSWRSEATFQFTVERFSRLSESVL-----SPPCFVRNLPWKIMVMPRFYPDRPHQKSVGF 55
Query: 75 YLAM-ADTNSLNFGLEVYAVFRLFLLDQNQDNYLVVQNAKERRFNGLKL----EWGFDQF 129
+L A+++S ++ AV ++ NY + + RR + L +WGF F
Sbjct: 56 FLQCNAESDSTSWSCHAQAVLKII-------NYRDDEKSFSRRISHLFFHKENDWGFSNF 108
Query: 130 ISHKAFKEASNGYLVEDTCVFGAEVFVK 157
++ + G++ +D F EVFV+
Sbjct: 109 MAWSEVTDPEKGFIDDDKVTF--EVFVQ 134
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 13/127 (10%)
Query: 182 VENFSKLDTRYEESQVFGAGNHKWKIVLYPRGNGCGDGDH---LSLYL---ALGDSTVDG 235
VE FS+L F N WKI++ PR D H + +L A DST
Sbjct: 13 VERFSRLSESVLSPPCF-VRNLPWKIMVMPRFYP--DRPHQKSVGFFLQCNAESDST--S 67
Query: 236 IKVYAEYTLRILD-QLGAKHKSLQAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLVNDV 294
+A+ L+I++ + K S + + +F N WG++ F+++SE+ P GF+ +D
Sbjct: 68 WSCHAQAVLKIINYRDDEKSFSRRISHLFFHKEN-DWGFSNFMAWSEVTDPEKGFIDDDK 126
Query: 295 CVVEAEV 301
E V
Sbjct: 127 VTFEVFV 133
>pdb|2F1Z|A Chain A, Crystal Structure Of Hausp
pdb|2F1Z|B Chain B, Crystal Structure Of Hausp
Length = 522
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 64/148 (43%), Gaps = 19/148 (12%)
Query: 15 TSHVSPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNVKDHISL 74
TS S A + ++ FS L+E + S WK+++ P + + +
Sbjct: 25 TSWRSEATFQFTVERFSRLSESVL-----SPPCFVRNLPWKIMVMPRFYPDRPHQKSVGF 79
Query: 75 YLAM-ADTNSLNFGLEVYAVFRLFLLDQNQDNYLVVQNAKERRFNGL----KLEWGFDQF 129
+L A+++S ++ AV ++ NY + + RR + L + +WGF F
Sbjct: 80 FLQCNAESDSTSWSCHAQAVLKII-------NYRDDEKSFSRRISHLFFHKENDWGFSNF 132
Query: 130 ISHKAFKEASNGYLVEDTCVFGAEVFVK 157
++ + G++ +D F EVFV+
Sbjct: 133 MAWSEVTDPEKGFIDDDKVTF--EVFVQ 158
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 13/131 (9%)
Query: 176 SKYVWKVENFSKLDTRYEESQVFGAGNHKWKIVLYPRGNGCGDGDH---LSLYL---ALG 229
+ + + VE FS+L F N WKI++ PR D H + +L A
Sbjct: 31 ATFQFTVERFSRLSESVLSPPCF-VRNLPWKIMVMPRF--YPDRPHQKSVGFFLQCNAES 87
Query: 230 DSTVDGIKVYAEYTLRILD-QLGAKHKSLQAAKDWFQSPNLTWGWTRFISFSELNKPGTG 288
DST +A+ L+I++ + K S + + +F N WG++ F+++SE+ P G
Sbjct: 88 DST--SWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKEN-DWGFSNFMAWSEVTDPEKG 144
Query: 289 FLVNDVCVVEA 299
F+ +D E
Sbjct: 145 FIDDDKVTFEV 155
>pdb|4GHU|A Chain A, Crystal Structure Of Traf3CARDIF
Length = 198
Score = 34.3 bits (77), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 19/107 (17%)
Query: 169 MEKFTYSSKYVWKVENFSKLDTRYEE----------SQVFGAGNHKWKIV--LYPRGNGC 216
+E +Y+ +WK+ ++ + R +E SQ F G +K+ +Y G+G
Sbjct: 33 LETASYNGVLIWKIRDYKR---RKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGM 89
Query: 217 GDGDHLSLYLALGDSTVDGIKVYA---EYTLRILDQLGAKHKSLQAA 260
G G HLSL+ + D + + + TL ++DQ G+ + L A
Sbjct: 90 GKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQ-GSSRRHLGDA 135
>pdb|1KZZ|A Chain A, Downstream Regulator Tank Binds To The Cd40 Recognition
Site On Traf3
pdb|1L0A|A Chain A, Downstream Regulator Tank Binds To The Cd40 Recognition
Site On Traf3
pdb|1ZMS|A Chain A, Lmp1 Protein Binds To Traf3 As A Structural Cd40
pdb|2GKW|A Chain A, Key Contacts Promote Recongnito Of Baff-R By Traf3
Length = 192
Score = 34.3 bits (77), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 19/107 (17%)
Query: 169 MEKFTYSSKYVWKVENFSKLDTRYEE----------SQVFGAGNHKWKIV--LYPRGNGC 216
+E +Y+ +WK+ ++ + R +E SQ F G +K+ +Y G+G
Sbjct: 33 LETASYNGVLIWKIRDYKR---RKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGM 89
Query: 217 GDGDHLSLYLALGDSTVDGIKVYA---EYTLRILDQLGAKHKSLQAA 260
G G HLSL+ + D + + + TL ++DQ G+ + L A
Sbjct: 90 GKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQ-GSSRRHLGDA 135
>pdb|1FLK|A Chain A, Molecular Basis For Cd40 Signaling Mediated By Traf3
pdb|1FLK|B Chain B, Molecular Basis For Cd40 Signaling Mediated By Traf3
pdb|1FLL|A Chain A, Molecular Basis For Cd40 Signaling Mediated By Traf3
pdb|1FLL|B Chain B, Molecular Basis For Cd40 Signaling Mediated By Traf3
Length = 228
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 19/107 (17%)
Query: 169 MEKFTYSSKYVWKVENFSKLDTRYEE----------SQVFGAGNHKWKIV--LYPRGNGC 216
+E +Y+ +WK+ ++ + R +E SQ F G +K+ +Y G+G
Sbjct: 69 LETASYNGVLIWKIRDYKR---RKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGM 125
Query: 217 GDGDHLSLYLALGDSTVDGIKVYA---EYTLRILDQLGAKHKSLQAA 260
G G HLSL+ + D + + + TL ++DQ G+ + L A
Sbjct: 126 GKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQ-GSSRRHLGDA 171
>pdb|1GZD|A Chain A, Crystal Structure Of Pig Phosphoglucose Isomerase
pdb|1GZV|A Chain A, The Crystal Structure Of Phosphoglucose Isomerase From Pig
Muscle Complexed With 5-Phosphoarabinonate
Length = 557
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 109 VQNAKERRFNGLKLEWGFDQFISHKAFKEASNGYLVED 146
V+ A+ER FNG K+ + D+ + H A + SN ++ D
Sbjct: 76 VEAARERMFNGEKINFTEDRAVLHVALRNRSNTPILVD 113
>pdb|3TQK|A Chain A, Structure Of Phospho-2-Dehydro-3-Deoxyheptonate Aldolase
From Francisella Tularensis Schu S4
Length = 346
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 219 GDHLSLYLALGDSTVDGIKVYAEYTLRILDQLGAKHKS-LQAAKDWFQSPNLTWGWTRFI 277
G+ + + +G ++ EY ++ +Q+ HK L + +F+ P T GW FI
Sbjct: 46 GNDDRVAVVVGPCSIHDPAAAIEYATKLKEQVKKFHKDILIIXRVYFEKPRTTIGWKGFI 105
Query: 278 SFSELN 283
+ +L+
Sbjct: 106 NDPDLD 111
>pdb|1IRI|A Chain A, Crystal Structure Of Human Autocrine Motility Factor
Complexed With An Inhibitor
pdb|1IRI|B Chain B, Crystal Structure Of Human Autocrine Motility Factor
Complexed With An Inhibitor
pdb|1IRI|C Chain C, Crystal Structure Of Human Autocrine Motility Factor
Complexed With An Inhibitor
pdb|1IRI|D Chain D, Crystal Structure Of Human Autocrine Motility Factor
Complexed With An Inhibitor
pdb|1JIQ|A Chain A, Crystal Structure Of Human Autocrine Motility Factor
pdb|1JIQ|B Chain B, Crystal Structure Of Human Autocrine Motility Factor
pdb|1JIQ|C Chain C, Crystal Structure Of Human Autocrine Motility Factor
pdb|1JIQ|D Chain D, Crystal Structure Of Human Autocrine Motility Factor
pdb|1NUH|A Chain A, The Crystal Structure Of Human Phosphoglucose Isomerase
Complexed With 5-Phosphoarabinonate
Length = 558
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 109 VQNAKERRFNGLKLEWGFDQFISHKAFKEASNGYLVED 146
V+ A+ER FNG K+ + + + H A + SN ++ D
Sbjct: 77 VEAARERMFNGEKINYTEGRAVLHVALRNRSNTPILVD 114
>pdb|1JLH|A Chain A, Human Glucose-6-Phosphate Isomerase
pdb|1JLH|B Chain B, Human Glucose-6-Phosphate Isomerase
pdb|1JLH|C Chain C, Human Glucose-6-Phosphate Isomerase
pdb|1JLH|D Chain D, Human Glucose-6-Phosphate Isomerase
Length = 558
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 109 VQNAKERRFNGLKLEWGFDQFISHKAFKEASNGYLVED 146
V+ A+ER FNG K+ + + + H A + SN ++ D
Sbjct: 77 VEAARERMFNGEKINYTEGRAVLHVALRNRSNTPILVD 114
>pdb|1IAT|A Chain A, Crystal Structure Of Human Phosphoglucose
IsomeraseNEUROLEUKINAUTOCRINE MOTILITY FACTORMATURATION
FACTOR
Length = 557
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 109 VQNAKERRFNGLKLEWGFDQFISHKAFKEASNGYLVED 146
V+ A+ER FNG K+ + + + H A + SN ++ D
Sbjct: 76 VEAARERMFNGEKINYTEGRAVLHVALRNRSNTPILVD 113
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,639,571
Number of Sequences: 62578
Number of extensions: 416147
Number of successful extensions: 741
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 704
Number of HSP's gapped (non-prelim): 38
length of query: 310
length of database: 14,973,337
effective HSP length: 99
effective length of query: 211
effective length of database: 8,778,115
effective search space: 1852182265
effective search space used: 1852182265
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)