Query 021574
Match_columns 310
No_of_seqs 297 out of 1971
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 04:03:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021574.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021574hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03772 MATH_HAUSP Herpesvirus 100.0 1.6E-27 3.5E-32 186.3 16.9 131 175-306 2-135 (137)
2 cd03772 MATH_HAUSP Herpesvirus 99.9 9.2E-27 2E-31 182.1 16.5 130 20-156 2-132 (137)
3 cd03774 MATH_SPOP Speckle-type 99.9 6.4E-27 1.4E-31 183.5 14.0 132 18-156 2-136 (139)
4 cd03775 MATH_Ubp21p Ubiquitin- 99.9 9.3E-27 2E-31 181.2 14.6 125 22-155 2-134 (134)
5 cd03780 MATH_TRAF5 Tumor Necro 99.9 5.5E-27 1.2E-31 183.7 12.8 133 21-154 1-147 (148)
6 cd03779 MATH_TRAF1 Tumor Necro 99.9 1.5E-26 3.3E-31 180.2 13.5 134 21-155 1-147 (147)
7 cd03777 MATH_TRAF3 Tumor Necro 99.9 3.7E-26 8.1E-31 185.2 14.4 136 17-155 35-184 (186)
8 cd03775 MATH_Ubp21p Ubiquitin- 99.9 8.7E-26 1.9E-30 175.7 14.3 123 177-302 2-134 (134)
9 cd03776 MATH_TRAF6 Tumor Necro 99.9 2.3E-26 5.1E-31 181.8 11.3 132 21-155 1-147 (147)
10 cd03774 MATH_SPOP Speckle-type 99.9 1.6E-25 3.4E-30 175.6 14.4 127 176-305 5-138 (139)
11 cd03781 MATH_TRAF4 Tumor Necro 99.9 1.2E-25 2.5E-30 178.8 13.4 132 21-155 1-154 (154)
12 cd00270 MATH_TRAF_C Tumor Necr 99.9 1E-25 2.2E-30 179.0 12.8 131 21-154 1-148 (149)
13 cd03771 MATH_Meprin Meprin fam 99.9 1.1E-24 2.5E-29 172.7 13.6 131 20-154 1-166 (167)
14 cd03773 MATH_TRIM37 Tripartite 99.9 8.1E-25 1.8E-29 170.2 12.2 124 173-302 2-130 (132)
15 cd03778 MATH_TRAF2 Tumor Necro 99.9 1.6E-24 3.5E-29 170.5 13.6 141 12-154 10-163 (164)
16 cd03773 MATH_TRIM37 Tripartite 99.9 1E-24 2.2E-29 169.6 12.4 126 19-155 3-130 (132)
17 cd03780 MATH_TRAF5 Tumor Necro 99.9 9.5E-25 2.1E-29 171.0 12.1 126 176-301 1-147 (148)
18 cd03779 MATH_TRAF1 Tumor Necro 99.9 1.2E-24 2.7E-29 169.5 12.6 127 176-302 1-147 (147)
19 cd03777 MATH_TRAF3 Tumor Necro 99.9 6.4E-24 1.4E-28 172.2 13.6 128 174-303 37-185 (186)
20 cd00270 MATH_TRAF_C Tumor Necr 99.9 4.7E-24 1E-28 169.4 11.6 125 176-302 1-149 (149)
21 cd03776 MATH_TRAF6 Tumor Necro 99.9 3.2E-24 7E-29 169.6 10.4 125 176-302 1-147 (147)
22 cd03781 MATH_TRAF4 Tumor Necro 99.9 8.3E-24 1.8E-28 168.1 12.0 125 176-302 1-154 (154)
23 cd03778 MATH_TRAF2 Tumor Necro 99.9 5E-23 1.1E-27 162.0 12.4 127 173-301 16-163 (164)
24 cd03771 MATH_Meprin Meprin fam 99.9 1.1E-22 2.5E-27 161.3 12.5 124 176-302 2-167 (167)
25 cd00121 MATH MATH (meprin and 99.9 1.9E-21 4.1E-26 149.4 14.6 122 177-302 2-126 (126)
26 cd00121 MATH MATH (meprin and 99.9 3.7E-21 8.1E-26 147.8 15.2 125 21-155 1-126 (126)
27 PF00917 MATH: MATH domain; I 99.8 9.7E-21 2.1E-25 144.4 11.5 118 27-156 1-119 (119)
28 cd03783 MATH_Meprin_Alpha Mepr 99.8 1.9E-20 4.1E-25 146.6 10.9 133 20-154 1-166 (167)
29 PF00917 MATH: MATH domain; I 99.8 1E-20 2.2E-25 144.3 9.1 114 182-303 1-119 (119)
30 cd03782 MATH_Meprin_Beta Mepri 99.8 2.1E-20 4.5E-25 145.5 10.8 131 20-154 1-166 (167)
31 cd03783 MATH_Meprin_Alpha Mepr 99.8 1.5E-18 3.3E-23 136.0 9.7 125 176-302 2-167 (167)
32 cd03782 MATH_Meprin_Beta Mepri 99.8 2.3E-18 5.1E-23 134.1 9.5 123 176-301 2-166 (167)
33 smart00061 MATH meprin and TRA 99.7 1.9E-16 4.1E-21 115.5 11.6 94 23-130 2-95 (95)
34 smart00061 MATH meprin and TRA 99.7 2.3E-16 5E-21 115.0 10.8 91 178-277 2-95 (95)
35 COG5077 Ubiquitin carboxyl-ter 99.5 7.4E-15 1.6E-19 136.4 7.1 129 174-306 37-173 (1089)
36 COG5077 Ubiquitin carboxyl-ter 99.5 1.5E-14 3.2E-19 134.4 5.5 135 15-159 33-174 (1089)
37 KOG1987 Speckle-type POZ prote 99.1 3E-11 6.5E-16 106.8 3.8 263 25-304 8-294 (297)
38 KOG1987 Speckle-type POZ prote 98.4 3.2E-06 7E-11 74.8 11.7 121 179-308 7-130 (297)
39 KOG1863 Ubiquitin carboxyl-ter 98.4 5E-07 1.1E-11 92.4 5.7 130 176-309 27-157 (1093)
40 KOG1863 Ubiquitin carboxyl-ter 98.0 7.2E-06 1.6E-10 84.1 4.4 128 21-159 27-155 (1093)
41 KOG0297 TNF receptor-associate 97.7 2.7E-05 5.9E-10 71.1 2.8 85 16-101 275-365 (391)
42 KOG0297 TNF receptor-associate 97.1 0.00036 7.9E-09 63.8 2.9 76 174-249 278-365 (391)
No 1
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=99.96 E-value=1.6e-27 Score=186.32 Aligned_cols=131 Identities=23% Similarity=0.395 Sum_probs=110.6
Q ss_pred CcEEEEEEcceeccCCceeecceEEeCCceEEEEEEeCCCCC--CCCCeEEEEEEeCCCC-CCCceEEEEEEEEEEcCCC
Q 021574 175 SSKYVWKVENFSKLDTRYEESQVFGAGNHKWKIVLYPRGNGC--GDGDHLSLYLALGDST-VDGIKVYAEYTLRILDQLG 251 (310)
Q Consensus 175 ~~~~~~~i~~fs~~~~~~~~S~~f~~gg~~w~i~~yp~g~~~--~~~~~ls~yL~~~~~~-~~~w~~~~~~~~~l~n~~~ 251 (310)
.++++|+|.||+.+ ++.+.|+.|.+||++|+|++||+|... +..++|||||+|.... .+.|++.|+|+|+|+||++
T Consensus 2 ~~~~~~~I~~~S~l-~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~~~~~w~i~a~~~~~l~~~~~ 80 (137)
T cd03772 2 EATFSFTVERFSRL-SESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAESDSTSWSCHAQAVLRIINYKD 80 (137)
T ss_pred CcEEEEEECCcccC-CCcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcCCCCCCeEEEEEEEEEEcCCC
Confidence 47899999999998 578999999999999999999999654 3347999999998754 4589999999999999985
Q ss_pred CceeeecccceeeccCcCCccccceecccccCCCCCCeeECCEEEEEEEEEEEcc
Q 021574 252 AKHKSLQAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLGT 306 (310)
Q Consensus 252 ~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V~v~~~ 306 (310)
......+...+.|.....+|||++||+|++|+++++|||+||+|+|||+|+|-..
T Consensus 81 ~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~~~ 135 (137)
T cd03772 81 DEPSFSRRISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQADAP 135 (137)
T ss_pred CcccEEEeeeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEeeCC
Confidence 4322213455678766779999999999999877789999999999999998653
No 2
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=99.95 E-value=9.2e-27 Score=182.07 Aligned_cols=130 Identities=17% Similarity=0.320 Sum_probs=108.7
Q ss_pred CceEEEEEccccccccccccceEEeccEEeCCeEEEEEEeeCCCcCC-CCCCeEEEEEEEecCCCCCCCcEEEEEEEEEE
Q 021574 20 PAHYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESK-NVKDHISLYLAMADTNSLNFGLEVYAVFRLFL 98 (310)
Q Consensus 20 ~~~~~w~I~~fs~~~~~~~~~~~~S~~f~~~G~~W~l~~~p~g~~~~-~~~~~ls~~L~~~~~~~~~~~w~~~~~f~~~l 98 (310)
.++|+|+|+|||.+. + .++|+.|.+||++|+|.+||+|.... +..+|||+||.|.+.. ....|++.|+|+|+|
T Consensus 2 ~~~~~~~I~~~S~l~----e-~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~-~~~~w~i~a~~~~~l 75 (137)
T cd03772 2 EATFSFTVERFSRLS----E-SVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAES-DSTSWSCHAQAVLRI 75 (137)
T ss_pred CcEEEEEECCcccCC----C-cEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcC-CCCCCeEEEEEEEEE
Confidence 589999999999983 2 89999999999999999999996511 3458999999997654 344899999999999
Q ss_pred EecCCCceeEEecceeeeecCCccccccceeeeccccccCCCCeEEcCeEEEEEEEEE
Q 021574 99 LDQNQDNYLVVQNAKERRFNGLKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVFV 156 (310)
Q Consensus 99 ~n~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~v 156 (310)
+|+++...... ....+.|......|||.+||++++|.+++++||.||+|+|+|+|+|
T Consensus 76 ~~~~~~~~~~~-~~~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~ 132 (137)
T cd03772 76 INYKDDEPSFS-RRISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQA 132 (137)
T ss_pred EcCCCCcccEE-EeeeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEe
Confidence 99996433332 2234678766789999999999999877899999999999999998
No 3
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=99.95 E-value=6.4e-27 Score=183.50 Aligned_cols=132 Identities=30% Similarity=0.520 Sum_probs=110.1
Q ss_pred cCCceEEEEEccccccccccccceEEeccEEeCC---eEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCCCCCcEEEEEE
Q 021574 18 VSPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGG---YKWKLVLYPNGNESKNVKDHISLYLAMADTNSLNFGLEVYAVF 94 (310)
Q Consensus 18 ~~~~~~~w~I~~fs~~~~~~~~~~~~S~~f~~~G---~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~~~~w~~~~~f 94 (310)
+...+|+|+|+|||++++. .++.+.|++|.+|| ++|+|.+||+|.. ++..+|+|+||++++.. .+++.|+|
T Consensus 2 ~~~~~~~w~I~~fS~~~~~-~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~-~~~~~~iSlyL~l~~~~----~~~v~a~f 75 (139)
T cd03774 2 VVKFCYMWTISNFSFCREE-MGEVIKSSTFSSGANDKLKWCLRVNPKGLD-EESKDYLSLYLLLVSCP----KSEVRAKF 75 (139)
T ss_pred ceEEEEEEEECCchhhhhc-CCCEEECCCeecCCcCCceEEEEEeCCCCC-CCCCCeEEEEEEEccCC----CCcEEEEE
Confidence 4678999999999998653 33389999999998 4999999999986 55679999999997643 36899999
Q ss_pred EEEEEecCCCceeEEecceeeeecCCccccccceeeeccccccCCCCeEEcCeEEEEEEEEE
Q 021574 95 RLFLLDQNQDNYLVVQNAKERRFNGLKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVFV 156 (310)
Q Consensus 95 ~~~l~n~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~v 156 (310)
+|.|+|+.+...........+.|.. ...|||.+||++++|+++.++||.||+|+|+|+|+|
T Consensus 76 ~~~l~n~~~~~~~~~~~~~~~~f~~-~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V 136 (139)
T cd03774 76 KFSILNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSV 136 (139)
T ss_pred EEEEEecCCCeeeeecccCcEeCCC-CCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEE
Confidence 9999999987543332334567765 578999999999999877789999999999999998
No 4
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=99.95 E-value=9.3e-27 Score=181.20 Aligned_cols=125 Identities=26% Similarity=0.538 Sum_probs=106.1
Q ss_pred eEEEEEccccccccccccceEEeccEEeCCeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCC----CCCCcEEEEEEEEE
Q 021574 22 HYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNVKDHISLYLAMADTNS----LNFGLEVYAVFRLF 97 (310)
Q Consensus 22 ~~~w~I~~fs~~~~~~~~~~~~S~~f~~~G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~----~~~~w~~~~~f~~~ 97 (310)
+|+|+|+|||.+.+ .+.|++|.+|||+|+|.+||+|+. . .+|+|+||.+.+... .+.+|++.|+|+|.
T Consensus 2 ~f~w~I~~fS~~~~-----~~~S~~F~vGG~~W~l~~yP~G~~-~--~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~ 73 (134)
T cd03775 2 SFTWRIKNWSELEK-----KVHSPKFKCGGFEWRILLFPQGNS-Q--TGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALV 73 (134)
T ss_pred cEEEEECCcccCCc-----ceeCCCEEECCeeEEEEEeCCCCC-C--CCeEEEEEEecCcccccccCCCCCeEEEEEEEE
Confidence 69999999999632 899999999999999999999976 2 789999999976543 24689999999999
Q ss_pred EEecCCCceeEEecceeeeecCCccccccceeeeccccccC----CCCeEEcCeEEEEEEEE
Q 021574 98 LLDQNQDNYLVVQNAKERRFNGLKLEWGFDQFISHKAFKEA----SNGYLVEDTCVFGAEVF 155 (310)
Q Consensus 98 l~n~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~~~----~~~yl~~d~l~i~~~v~ 155 (310)
|+||.++..... ....+.|+....+|||.+||++++|++| ++|||+||+|+|++.|+
T Consensus 74 l~n~~~~~~~~~-~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~ 134 (134)
T cd03775 74 ISNPGDPSIQLS-NVAHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYVR 134 (134)
T ss_pred EEcCCCCccceE-ccceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence 999987654332 3357899887789999999999999954 57999999999999874
No 5
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive
Probab=99.95 E-value=5.5e-27 Score=183.65 Aligned_cols=133 Identities=20% Similarity=0.321 Sum_probs=110.2
Q ss_pred ceEEEEEcccccccc-ccccc--eEEeccE--EeCCeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCC-CCCcEEEEEE
Q 021574 21 AHYVVKIKSFSFLAE-KAVEV--KYESAAF--EAGGYKWKLVLYPNGNESKNVKDHISLYLAMADTNSL-NFGLEVYAVF 94 (310)
Q Consensus 21 ~~~~w~I~~fs~~~~-~~~~~--~~~S~~f--~~~G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~-~~~w~~~~~f 94 (310)
|++.|+|++|+++++ .+.+. .+.|++| .++||+|+|++||||.+ .+..+|||+||++++++.| ...||+++++
T Consensus 1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i~~ypnG~~-~~~~~~iSv~l~l~~g~~D~~l~wp~~~~~ 79 (148)
T cd03780 1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCARAYLNGDG-SGKGTHLSLYFVVMRGEFDSLLQWPFRQRV 79 (148)
T ss_pred CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEEEEEcCCCC-CCCCCEEEEEEEEecCccccccCcceEEEE
Confidence 689999999999975 34444 7999999 88999999999999987 5678899999999998777 6789999999
Q ss_pred EEEEEecCCCcee---EE-ecceeeeecCC----ccccccceeeeccccccCCCCeEEcCeEEEEEEE
Q 021574 95 RLFLLDQNQDNYL---VV-QNAKERRFNGL----KLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEV 154 (310)
Q Consensus 95 ~~~l~n~~~~~~~---~~-~~~~~~~F~~~----~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v 154 (310)
+|+|++|.+.... .. .+.....|+.. +..||+.+||++++|+.++.+||+||+|+|+|.|
T Consensus 80 tfsLlDq~~~~~~~~~~~~~~~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v 147 (148)
T cd03780 80 TLMLLDQSGKKNHIMETFKADPNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAV 147 (148)
T ss_pred EEEEECCCCCCCCcceeeecCCccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEE
Confidence 9999999865432 11 11224668665 5679999999999998544699999999999987
No 6
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat
Probab=99.94 E-value=1.5e-26 Score=180.16 Aligned_cols=134 Identities=24% Similarity=0.306 Sum_probs=107.2
Q ss_pred ceEEEEEccccccccc---cccceEEeccEEe--CCeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCC-CCCcEEEEEE
Q 021574 21 AHYVVKIKSFSFLAEK---AVEVKYESAAFEA--GGYKWKLVLYPNGNESKNVKDHISLYLAMADTNSL-NFGLEVYAVF 94 (310)
Q Consensus 21 ~~~~w~I~~fs~~~~~---~~~~~~~S~~f~~--~G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~-~~~w~~~~~f 94 (310)
|++.|+|+||+++.+. +....++||+|.. .||+|+|++||||.+ .+..+|+|+||+++++..+ ...|++++++
T Consensus 1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i~~ypnG~~-~~~~~~iSv~l~l~~g~~D~~l~wpv~~~~ 79 (147)
T cd03779 1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCLRLYLNGDG-AGKGTHISLFFVIMKGEYDALLPWPFRHKV 79 (147)
T ss_pred CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEcCCCC-CCCCCEEEEEEEEecCCcccccCcceEEEE
Confidence 6899999999987653 2333799999986 599999999999987 5678899999999987655 6789999999
Q ss_pred EEEEEecCCCceeEE-ecc--eeeeec----CCccccccceeeeccccccCCCCeEEcCeEEEEEEEE
Q 021574 95 RLFLLDQNQDNYLVV-QNA--KERRFN----GLKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVF 155 (310)
Q Consensus 95 ~~~l~n~~~~~~~~~-~~~--~~~~F~----~~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~ 155 (310)
+|+|++|.+...... ... ..+.|+ ..+..||+.+||++++|+.+..+||+||+++|+|+|.
T Consensus 80 tfsLlDq~~~~~~~~~~~~~~~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V~ 147 (147)
T cd03779 80 TFMLLDQNNREHVIDAFRPDLSSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVVD 147 (147)
T ss_pred EEEEECCCCCCCCcEeecCCcccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEEC
Confidence 999999986443211 111 135686 3456799999999999983334999999999999983
No 7
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=99.94 E-value=3.7e-26 Score=185.20 Aligned_cols=136 Identities=18% Similarity=0.271 Sum_probs=110.6
Q ss_pred ccCCceEEEEEcccccccc-ccccc--eEEeccEEeC--CeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCC-CCCcEE
Q 021574 17 HVSPAHYVVKIKSFSFLAE-KAVEV--KYESAAFEAG--GYKWKLVLYPNGNESKNVKDHISLYLAMADTNSL-NFGLEV 90 (310)
Q Consensus 17 ~~~~~~~~w~I~~fs~~~~-~~~~~--~~~S~~f~~~--G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~-~~~w~~ 90 (310)
...+|+|.|+|.||+.+++ .+.+. .++|++|.++ ||+|+|.+||||.+ .+..+|+|+||.+++++.+ ...||+
T Consensus 35 ~~~~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i~~ypnG~g-~~~~~~iSvyl~L~~ge~D~~L~WP~ 113 (186)
T cd03777 35 ASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDG-MGKGTHLSLFFVIMRGEYDALLPWPF 113 (186)
T ss_pred cccceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEEEEEcCCCC-CCCCCEEEEEEEEecCCcccccCCce
Confidence 4557999999999999965 33333 7999999999 99999999999987 5678899999999998766 678999
Q ss_pred EEEEEEEEEecCCCceeEE----ecceeeeecC-C---ccccccceeeeccccccCCCCeEEcCeEEEEEEEE
Q 021574 91 YAVFRLFLLDQNQDNYLVV----QNAKERRFNG-L---KLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVF 155 (310)
Q Consensus 91 ~~~f~~~l~n~~~~~~~~~----~~~~~~~F~~-~---~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~ 155 (310)
.++++|.|++|.+...... +......|.. . +..||+..||++++|+ +++||+||+|+|+|.|.
T Consensus 114 ~~~~tfsLlDQ~~~~~~~~~~~~p~p~~~~F~rp~~~~n~~~G~~~Fi~~~~Le--~~~ylkdD~l~Irv~v~ 184 (186)
T cd03777 114 KQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVD 184 (186)
T ss_pred eEEEEEEEEcCCCccccccceeccCCccccccCCccCCCCCCCchheeEHHHhc--cCCcEeCCEEEEEEEEe
Confidence 9999999999975322111 1112355762 2 4579999999999998 68999999999999885
No 8
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=99.94 E-value=8.7e-26 Score=175.73 Aligned_cols=123 Identities=27% Similarity=0.533 Sum_probs=104.4
Q ss_pred EEEEEEcceeccCCceeecceEEeCCceEEEEEEeCCCCCCCCCeEEEEEEeCCCC------CCCceEEEEEEEEEEcCC
Q 021574 177 KYVWKVENFSKLDTRYEESQVFGAGNHKWKIVLYPRGNGCGDGDHLSLYLALGDST------VDGIKVYAEYTLRILDQL 250 (310)
Q Consensus 177 ~~~~~i~~fs~~~~~~~~S~~f~~gg~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~------~~~w~~~~~~~~~l~n~~ 250 (310)
+|+|+|.|||.+. +.+.|++|.+||++|+|.+||+|+.. .+++|+||.+.... .+.|++.|+|+|.|+||.
T Consensus 2 ~f~w~I~~fS~~~-~~~~S~~F~vGG~~W~l~~yP~G~~~--~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~l~n~~ 78 (134)
T cd03775 2 SFTWRIKNWSELE-KKVHSPKFKCGGFEWRILLFPQGNSQ--TGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALVISNPG 78 (134)
T ss_pred cEEEEECCcccCC-cceeCCCEEECCeeEEEEEeCCCCCC--CCeEEEEEEecCcccccccCCCCCeEEEEEEEEEEcCC
Confidence 5899999999964 78999999999999999999999765 57999999987543 247999999999999997
Q ss_pred CCceeeecccceeeccCcCCccccceecccccCCC----CCCeeECCEEEEEEEEE
Q 021574 251 GAKHKSLQAAKDWFQSPNLTWGWTRFISFSELNKP----GTGFLVNDVCVVEAEVT 302 (310)
Q Consensus 251 ~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~----~~g~l~dD~l~i~~~V~ 302 (310)
++.........+.|+....+|||.+||++++|+++ ++|||+||+|+|+|.|.
T Consensus 79 ~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~ 134 (134)
T cd03775 79 DPSIQLSNVAHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYVR 134 (134)
T ss_pred CCccceEccceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence 65432214557889877789999999999999954 57999999999999873
No 9
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp
Probab=99.94 E-value=2.3e-26 Score=181.82 Aligned_cols=132 Identities=23% Similarity=0.294 Sum_probs=106.1
Q ss_pred ceEEEEEcccccccc-ccccc--eEEeccEEe--CCeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCC-CCCcEEEEEE
Q 021574 21 AHYVVKIKSFSFLAE-KAVEV--KYESAAFEA--GGYKWKLVLYPNGNESKNVKDHISLYLAMADTNSL-NFGLEVYAVF 94 (310)
Q Consensus 21 ~~~~w~I~~fs~~~~-~~~~~--~~~S~~f~~--~G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~-~~~w~~~~~f 94 (310)
|+|.|+|.|||.+++ ++.+. .++|++|.+ |||+|+|.+||+|.. ++..+|||+||+++++..+ ..+|++.++|
T Consensus 1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i~~yP~G~~-~~~~~~lS~~L~l~~~~~d~~l~wpv~a~~ 79 (147)
T cd03776 1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCARLNLSLPE-ARCPNYISLFVHLMQGENDSHLDWPFQGTI 79 (147)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCC-CCCCCEEEEEEEEeccCCCcccCCccccee
Confidence 689999999998754 34443 388999985 799999999999987 5677899999999987764 6789999999
Q ss_pred EEEEEecCCCceeE---E-ecceeeeecC-----CccccccceeeeccccccCCCCeEEcCeEEEEEEEE
Q 021574 95 RLFLLDQNQDNYLV---V-QNAKERRFNG-----LKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVF 155 (310)
Q Consensus 95 ~~~l~n~~~~~~~~---~-~~~~~~~F~~-----~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~ 155 (310)
+|.|+||.++.... . .......|.. .+.+|||.+||++++|+ +++||+||+|+|+|+|.
T Consensus 80 ~~~lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le--~~~yl~dD~l~I~c~V~ 147 (147)
T cd03776 80 TLTLLDQSEPRQNIHETMMSKPELLAFQRPTTDRNPKGFGYVEFAHIEDLL--QRGFVKNDTLLIKIEVN 147 (147)
T ss_pred EEEEECCCcccCccEEEEEcCCChHhhcCCCcCCCCCCeeEceeeEHHHhh--hCCCccCCEEEEEEEEC
Confidence 99999998743321 1 1122345653 34689999999999998 57899999999999984
No 10
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=99.93 E-value=1.6e-25 Score=175.62 Aligned_cols=127 Identities=29% Similarity=0.487 Sum_probs=106.9
Q ss_pred cEEEEEEcceeccC---CceeecceEEeCCc---eEEEEEEeCCCCCCCCCeEEEEEEeCCCCCCCceEEEEEEEEEEcC
Q 021574 176 SKYVWKVENFSKLD---TRYEESQVFGAGNH---KWKIVLYPRGNGCGDGDHLSLYLALGDSTVDGIKVYAEYTLRILDQ 249 (310)
Q Consensus 176 ~~~~~~i~~fs~~~---~~~~~S~~f~~gg~---~w~i~~yp~g~~~~~~~~ls~yL~~~~~~~~~w~~~~~~~~~l~n~ 249 (310)
.+|+|+|.|||.+. ++.+.|++|.+||+ +|+|++||+|...+..+|+|+||++.... .+++.|+|+|.|+||
T Consensus 5 ~~~~w~I~~fS~~~~~~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~~~~~~~iSlyL~l~~~~--~~~v~a~f~~~l~n~ 82 (139)
T cd03774 5 FCYMWTISNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCP--KSEVRAKFKFSILNA 82 (139)
T ss_pred EEEEEEECCchhhhhcCCCEEECCCeecCCcCCceEEEEEeCCCCCCCCCCeEEEEEEEccCC--CCcEEEEEEEEEEec
Confidence 57999999999874 67899999999985 99999999998766678999999997643 578999999999999
Q ss_pred CCCceeee-cccceeeccCcCCccccceecccccCCCCCCeeECCEEEEEEEEEEEc
Q 021574 250 LGAKHKSL-QAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLG 305 (310)
Q Consensus 250 ~~~~~~~~-~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V~v~~ 305 (310)
++.+.... ....+.|.. ..+|||.+||++++|+++.+|||+||+|+|+|+|+|++
T Consensus 83 ~~~~~~~~~~~~~~~f~~-~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~~ 138 (139)
T cd03774 83 KGEETKAMESQRAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ 138 (139)
T ss_pred CCCeeeeecccCcEeCCC-CCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEEc
Confidence 87653221 223466753 57899999999999987778999999999999999985
No 11
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR
Probab=99.93 E-value=1.2e-25 Score=178.78 Aligned_cols=132 Identities=23% Similarity=0.362 Sum_probs=106.6
Q ss_pred ceEEEEEccccccccc--c-ccceEEeccEEeC--CeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCC-CCCcEEEEEE
Q 021574 21 AHYVVKIKSFSFLAEK--A-VEVKYESAAFEAG--GYKWKLVLYPNGNESKNVKDHISLYLAMADTNSL-NFGLEVYAVF 94 (310)
Q Consensus 21 ~~~~w~I~~fs~~~~~--~-~~~~~~S~~f~~~--G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~-~~~w~~~~~f 94 (310)
|+|.|+|.+||.++++ + .+..+.|++|.+| ||+|+|.+||+|.. ++..+|+|+||++++++.+ ...|++.++|
T Consensus 1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~-~~~~~~vs~~l~l~~ge~d~~l~wp~~a~~ 79 (154)
T cd03781 1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQVSAFLNGNG-SGEGSHLSVYIRVLPGEYDNLLEWPFSHRI 79 (154)
T ss_pred CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEEEEECCCCC-CCCCCEEEEEEEEecCCcccccCCceeeEE
Confidence 6899999999999763 2 3458999999999 99999999999987 5677899999999987655 3689999999
Q ss_pred EEEEEecCCCc--e--eEE----ecceeeeecC--------CccccccceeeeccccccCCCCeEEcCeEEEEEEEE
Q 021574 95 RLFLLDQNQDN--Y--LVV----QNAKERRFNG--------LKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVF 155 (310)
Q Consensus 95 ~~~l~n~~~~~--~--~~~----~~~~~~~F~~--------~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~ 155 (310)
+|+|++|.+.. . ... .......|+. .+.+||+..||++++|+ +++||+||+|+|+|+|.
T Consensus 80 ~~~llDq~~~~~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le--~~~yl~dD~l~Irc~v~ 154 (154)
T cd03781 80 TFTLLDQSDPSLSKPQHITETFTPDPTWKNFQKPSASRLDESTLGFGYPKFISHEDLK--KRNYIKDDAIFLRASVE 154 (154)
T ss_pred EEEEECCCCCccccCcceEEEEEcCCchhhhcCCcccccCCCCCccchhHeeEHHHHh--hCCcccCCEEEEEEEeC
Confidence 99999998641 1 110 1112344552 34579999999999998 68999999999999983
No 12
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter
Probab=99.93 E-value=1e-25 Score=178.95 Aligned_cols=131 Identities=25% Similarity=0.403 Sum_probs=105.7
Q ss_pred ceEEEEEccccccccc---cccceEEeccEEeC--CeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCC-CCCcEEEEEE
Q 021574 21 AHYVVKIKSFSFLAEK---AVEVKYESAAFEAG--GYKWKLVLYPNGNESKNVKDHISLYLAMADTNSL-NFGLEVYAVF 94 (310)
Q Consensus 21 ~~~~w~I~~fs~~~~~---~~~~~~~S~~f~~~--G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~-~~~w~~~~~f 94 (310)
|+|+|+|.|||.+++. +.+..++|++|.+| ||+|+|.+||+|.. ++..+|||+||+++++..+ ...|++.|+|
T Consensus 1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i~~yP~G~~-~~~~~~lsl~L~l~~~~~d~~~~w~~~~~~ 79 (149)
T cd00270 1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDG-TGKGTHLSLFVHVMKGEYDALLEWPFRGKI 79 (149)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCC-CCCCCEEEEEEEEeccCCCccccCCccceE
Confidence 6899999999999652 33448999999999 99999999999986 4566899999999888665 5789999999
Q ss_pred EEEEEecCCC--ceeEE----ecceeeeec-----CCccccccceeeeccccccCCCCeEEcCeEEEEEEE
Q 021574 95 RLFLLDQNQD--NYLVV----QNAKERRFN-----GLKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEV 154 (310)
Q Consensus 95 ~~~l~n~~~~--~~~~~----~~~~~~~F~-----~~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v 154 (310)
+|.|+||.++ ..... .......|. ..+.+|||.+||++++|+ +.+||.||+|+|+|+|
T Consensus 80 ~~~l~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~--~~gfl~dD~l~I~~~v 148 (149)
T cd00270 80 TLTLLDQSDDSKRKHITETFMPDPNSSAFQRPPTGENNIGFGYPEFVPLEKLE--SRGYVKDDTLFIKVEV 148 (149)
T ss_pred EEEEECCCCccccCceEEEEEcCCchHhhcCCCcccCCCCcCcceEeEHHHhc--cCCCEeCCEEEEEEEE
Confidence 9999999874 22111 111233454 135789999999999998 4699999999999998
No 13
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces. They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co
Probab=99.92 E-value=1.1e-24 Score=172.70 Aligned_cols=131 Identities=22% Similarity=0.335 Sum_probs=103.7
Q ss_pred CceEEEEEccccccc-cccccceEEeccE-EeCCeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCC-CCCcE-EEEEEE
Q 021574 20 PAHYVVKIKSFSFLA-EKAVEVKYESAAF-EAGGYKWKLVLYPNGNESKNVKDHISLYLAMADTNSL-NFGLE-VYAVFR 95 (310)
Q Consensus 20 ~~~~~w~I~~fs~~~-~~~~~~~~~S~~f-~~~G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~-~~~w~-~~~~f~ 95 (310)
+.+|+|+|.|||+++ +.+.+..++|++| .++||+|+|++||+|.. + ..+|||+||++++++.+ .++|+ +.++++
T Consensus 1 cp~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~-~-~~~~lSlyL~L~~g~~d~~L~WP~v~a~~t 78 (167)
T cd03771 1 CPEAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQVGLYPNGTE-S-YPGYTGLYFHLCSGENDDVLEWPCPNRQAT 78 (167)
T ss_pred CCeEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEEEEEeCCCC-C-CCCcceEEEEEecCCccccccCcceeEEEE
Confidence 468999999999996 4455558999999 89999999999999987 5 67899999999988765 78899 589999
Q ss_pred EEEEecCCCc---eeE----Eeccee-------eeecC-----------------CccccccceeeeccccccCCCCeEE
Q 021574 96 LFLLDQNQDN---YLV----VQNAKE-------RRFNG-----------------LKLEWGFDQFISHKAFKEASNGYLV 144 (310)
Q Consensus 96 ~~l~n~~~~~---~~~----~~~~~~-------~~F~~-----------------~~~~~G~~~fi~~~~l~~~~~~yl~ 144 (310)
|+|++|.+.. ... .++... ..|.. .+.+|||.+||++++|. +..||+
T Consensus 79 ~~LlDQ~~~~~~r~~~~~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~--~r~ylk 156 (167)
T cd03771 79 MTLLDQDPDIQQRMSNQRSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLR--RRDFLK 156 (167)
T ss_pred EEEECCCCcccccCcceEEEecCCcccccccccccccCCccccccccccccccccccCccccccceeHHHhc--cCCCCc
Confidence 9999997421 111 111110 01222 23489999999999999 577999
Q ss_pred cCeEEEEEEE
Q 021574 145 EDTCVFGAEV 154 (310)
Q Consensus 145 ~d~l~i~~~v 154 (310)
||+|.|++++
T Consensus 157 ~dtl~i~~~~ 166 (167)
T cd03771 157 GDDLIILLDF 166 (167)
T ss_pred CCEEEEEEEe
Confidence 9999999987
No 14
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=99.92 E-value=8.1e-25 Score=170.18 Aligned_cols=124 Identities=26% Similarity=0.457 Sum_probs=104.7
Q ss_pred ccCcEEEEEEcceeccC--CceeecceEEeCCceEEEEEEeCCCCCCCCCeEEEEEEeCCCCCCCceEEEEEEEEEEcCC
Q 021574 173 TYSSKYVWKVENFSKLD--TRYEESQVFGAGNHKWKIVLYPRGNGCGDGDHLSLYLALGDSTVDGIKVYAEYTLRILDQL 250 (310)
Q Consensus 173 ~~~~~~~~~i~~fs~~~--~~~~~S~~f~~gg~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~~~~w~~~~~~~~~l~n~~ 250 (310)
|+..+++|+|.|||.+. ++.+.|+.|.+||++|+|++||+|...+.++|||+||.+..+. .|++.++|+|+|+||.
T Consensus 2 ~~~~~~~~~I~~fS~~~~~~~~~~S~~F~vgG~~W~i~~yP~G~~~~~~~~lSl~L~l~~~~--~~~~~~~~~l~llnq~ 79 (132)
T cd03773 2 PPYDSATFTLENFSTLRQSADPVYSDPLNVDGLCWRLKVYPDGNGEVRGNFLSVFLELCSGL--GEASKYEYRVEMVHQA 79 (132)
T ss_pred CCCcccEEEECChhhhhcCCcceeCCCeEeCCccEEEEEECCCCCCCCCCEEEEEEEeecCC--CCceeEEEEEEEEcCC
Confidence 67788999999999985 5789999999999999999999998776678999999987642 4778899999999995
Q ss_pred CC-ceeeecccceeeccCcCCccccceecccccCCCCCCeeEC--CEEEEEEEEE
Q 021574 251 GA-KHKSLQAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLVN--DVCVVEAEVT 302 (310)
Q Consensus 251 ~~-~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~g~l~d--D~l~i~~~V~ 302 (310)
++ .+.. ....+.|.. ..+|||.+||++++|++ +|||+| |+|+|+|.|+
T Consensus 80 ~~~~~~~-~~~~~~f~~-~~~wG~~~Fi~~~~L~~--~gfl~~~~D~l~i~~~v~ 130 (132)
T cd03773 80 NPTKNIK-REFASDFEV-GECWGYNRFFRLDLLIN--EGYLLPENDTLILRFSVR 130 (132)
T ss_pred CCccceE-EeccccccC-CCCcCHHHhccHHHHhh--CCCcCCCCCEEEEEEEEe
Confidence 43 3333 445567764 46799999999999985 799999 9999999986
No 15
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z
Probab=99.92 E-value=1.6e-24 Score=170.47 Aligned_cols=141 Identities=21% Similarity=0.302 Sum_probs=111.8
Q ss_pred cccccccCCceEEEEEccccccccc---cccceEEeccEEe--CCeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCCC-
Q 021574 12 ARSTSHVSPAHYVVKIKSFSFLAEK---AVEVKYESAAFEA--GGYKWKLVLYPNGNESKNVKDHISLYLAMADTNSLN- 85 (310)
Q Consensus 12 ~~~~~~~~~~~~~w~I~~fs~~~~~---~~~~~~~S~~f~~--~G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~~- 85 (310)
.........|++.|+|.||+++.+. +....++||+|.. +||+|+|++||+|++ .+.+.|||+|+++++++.+.
T Consensus 10 ~~l~~~~~~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g-~~~g~~LSly~~l~~Ge~D~~ 88 (164)
T cd03778 10 LEXEASTYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDG-TGRGTHLSLFFVVMKGPNDAL 88 (164)
T ss_pred hhccccccCCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEEEEEeCCCC-CCCCCEEEEEEEEecCCcCcc
Confidence 3333455689999999999998664 2334899999975 789999999999987 56778999999999999984
Q ss_pred CCcEEEEEEEEEEEecCCCceeEE---ecceeeeec----CCccccccceeeeccccccCCCCeEEcCeEEEEEEE
Q 021574 86 FGLEVYAVFRLFLLDQNQDNYLVV---QNAKERRFN----GLKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEV 154 (310)
Q Consensus 86 ~~w~~~~~f~~~l~n~~~~~~~~~---~~~~~~~F~----~~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v 154 (310)
+.||+..+++|+|+||++..+... ++.....|. ..+..|||..|+++++|..+ .+||+||+|.|+|.|
T Consensus 89 L~WPf~~~itl~llDQ~~r~hi~~~~~pd~~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~~-~~Yv~dDtlfIk~~V 163 (164)
T cd03778 89 LRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKXEAK-NSYVRDDAIFIKAIV 163 (164)
T ss_pred cCCceeeEEEEEEECCCCCCcceeEEEcCcchHhcCCCCcccccCcCcceEEEhhHcccc-CCcccCCeEEEEEEE
Confidence 999999999999999986433221 111222453 23567999999999999843 699999999999987
No 16
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=99.92 E-value=1e-24 Score=169.64 Aligned_cols=126 Identities=21% Similarity=0.393 Sum_probs=103.5
Q ss_pred CCceEEEEEccccccccccccceEEeccEEeCCeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCCCCCcEEEEEEEEEE
Q 021574 19 SPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNVKDHISLYLAMADTNSLNFGLEVYAVFRLFL 98 (310)
Q Consensus 19 ~~~~~~w~I~~fs~~~~~~~~~~~~S~~f~~~G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~~~~w~~~~~f~~~l 98 (310)
...+++|+|.|||.+++. ++ .++|++|.+|||+|+|.+||+|.. ++..+|||+||.+.++. .|++.++|+|+|
T Consensus 3 ~~~~~~~~I~~fS~~~~~-~~-~~~S~~F~vgG~~W~i~~yP~G~~-~~~~~~lSl~L~l~~~~----~~~~~~~~~l~l 75 (132)
T cd03773 3 PYDSATFTLENFSTLRQS-AD-PVYSDPLNVDGLCWRLKVYPDGNG-EVRGNFLSVFLELCSGL----GEASKYEYRVEM 75 (132)
T ss_pred CCcccEEEECChhhhhcC-Cc-ceeCCCeEeCCccEEEEEECCCCC-CCCCCEEEEEEEeecCC----CCceeEEEEEEE
Confidence 467899999999998642 33 899999999999999999999987 55678999999997642 367889999999
Q ss_pred EecCCCceeEEecceeeeecCCccccccceeeeccccccCCCCeEEc--CeEEEEEEEE
Q 021574 99 LDQNQDNYLVVQNAKERRFNGLKLEWGFDQFISHKAFKEASNGYLVE--DTCVFGAEVF 155 (310)
Q Consensus 99 ~n~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~~--d~l~i~~~v~ 155 (310)
+||.++..... ....+.|.. +.+|||.+||++++|. ++|||.| |+|+|+|.|+
T Consensus 76 lnq~~~~~~~~-~~~~~~f~~-~~~wG~~~Fi~~~~L~--~~gfl~~~~D~l~i~~~v~ 130 (132)
T cd03773 76 VHQANPTKNIK-REFASDFEV-GECWGYNRFFRLDLLI--NEGYLLPENDTLILRFSVR 130 (132)
T ss_pred EcCCCCccceE-EeccccccC-CCCcCHHHhccHHHHh--hCCCcCCCCCEEEEEEEEe
Confidence 99954433332 334567765 4779999999999998 5899999 9999999985
No 17
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive
Probab=99.92 E-value=9.5e-25 Score=171.01 Aligned_cols=126 Identities=28% Similarity=0.457 Sum_probs=104.8
Q ss_pred cEEEEEEcceeccC-----Cc--eeecceE--EeCCceEEEEEEeCCCCCCCCCeEEEEEEeCCCC---CCCceEEEEEE
Q 021574 176 SKYVWKVENFSKLD-----TR--YEESQVF--GAGNHKWKIVLYPRGNGCGDGDHLSLYLALGDST---VDGIKVYAEYT 243 (310)
Q Consensus 176 ~~~~~~i~~fs~~~-----~~--~~~S~~f--~~gg~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~---~~~w~~~~~~~ 243 (310)
+.+.|+|.+|+.++ ++ .+.|++| .++||+|+|++||||.+.+.++|||+||+++.++ ...|++.++++
T Consensus 1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wp~~~~~t 80 (148)
T cd03780 1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVT 80 (148)
T ss_pred CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCccccccCcceEEEEE
Confidence 46899999999986 34 7999999 8899999999999999887788999999999876 35899999999
Q ss_pred EEEEcCCCCce---eeecc--cceeeccC----cCCccccceecccccCCCCCCeeECCEEEEEEEE
Q 021574 244 LRILDQLGAKH---KSLQA--AKDWFQSP----NLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEV 301 (310)
Q Consensus 244 ~~l~n~~~~~~---~~~~~--~~~~F~~~----~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V 301 (310)
|.|++|.+... ..... ....|.+. +.+||+++||++++|+..+.+||+||+|+|+|.|
T Consensus 81 fsLlDq~~~~~~~~~~~~~~~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v 147 (148)
T cd03780 81 LMLLDQSGKKNHIMETFKADPNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAV 147 (148)
T ss_pred EEEECCCCCCCCcceeeecCCccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEE
Confidence 99999975432 11111 13567655 5579999999999998744689999999999987
No 18
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat
Probab=99.92 E-value=1.2e-24 Score=169.48 Aligned_cols=127 Identities=23% Similarity=0.364 Sum_probs=103.4
Q ss_pred cEEEEEEcceeccC-----C--ceeecceEEeC--CceEEEEEEeCCCCCCCCCeEEEEEEeCCCC---CCCceEEEEEE
Q 021574 176 SKYVWKVENFSKLD-----T--RYEESQVFGAG--NHKWKIVLYPRGNGCGDGDHLSLYLALGDST---VDGIKVYAEYT 243 (310)
Q Consensus 176 ~~~~~~i~~fs~~~-----~--~~~~S~~f~~g--g~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~---~~~w~~~~~~~ 243 (310)
|.+.|+|.||++.. + ..++|+.|+.. ||+|+|++||||.+.+.++|+|+||+++.++ ...|++.++++
T Consensus 1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wpv~~~~t 80 (147)
T cd03779 1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCLRLYLNGDGAGKGTHISLFFVIMKGEYDALLPWPFRHKVT 80 (147)
T ss_pred CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCcceEEEEE
Confidence 56899999999765 2 36999999885 9999999999999887788999999999875 34899999999
Q ss_pred EEEEcCCCCceee-eccc---ceeec----cCcCCccccceecccccCCCCCCeeECCEEEEEEEEE
Q 021574 244 LRILDQLGAKHKS-LQAA---KDWFQ----SPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVT 302 (310)
Q Consensus 244 ~~l~n~~~~~~~~-~~~~---~~~F~----~~~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V~ 302 (310)
|.|++|.+..+.. .... ...|+ ..+.+||+++||++++|+....+||+||+++|+|+|.
T Consensus 81 fsLlDq~~~~~~~~~~~~~~~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V~ 147 (147)
T cd03779 81 FMLLDQNNREHVIDAFRPDLSSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVVD 147 (147)
T ss_pred EEEECCCCCCCCcEeecCCcccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEEC
Confidence 9999997644321 0111 25686 3445799999999999986435899999999999983
No 19
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=99.91 E-value=6.4e-24 Score=172.19 Aligned_cols=128 Identities=23% Similarity=0.406 Sum_probs=105.1
Q ss_pred cCcEEEEEEcceeccC-----Cc--eeecceEEeC--CceEEEEEEeCCCCCCCCCeEEEEEEeCCCC---CCCceEEEE
Q 021574 174 YSSKYVWKVENFSKLD-----TR--YEESQVFGAG--NHKWKIVLYPRGNGCGDGDHLSLYLALGDST---VDGIKVYAE 241 (310)
Q Consensus 174 ~~~~~~~~i~~fs~~~-----~~--~~~S~~f~~g--g~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~---~~~w~~~~~ 241 (310)
..|.|.|+|.+|+..+ ++ .+.|++|++| ||+|+|++||||.+.+.++|||+||++++++ ...|++.++
T Consensus 37 ~~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i~~ypnG~g~~~~~~iSvyl~L~~ge~D~~L~WP~~~~ 116 (186)
T cd03777 37 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQK 116 (186)
T ss_pred cceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCCceeEE
Confidence 4689999999999875 34 7999999999 9999999999999877788999999999876 348999999
Q ss_pred EEEEEEcCCCCc-eee----ecccceeecc-C---cCCccccceecccccCCCCCCeeECCEEEEEEEEEE
Q 021574 242 YTLRILDQLGAK-HKS----LQAAKDWFQS-P---NLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTV 303 (310)
Q Consensus 242 ~~~~l~n~~~~~-~~~----~~~~~~~F~~-~---~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V~v 303 (310)
++|.|++|.+.. +.. .......|.. . +.+||+++||++++|+. ++||+||+|+|+|.|..
T Consensus 117 ~tfsLlDQ~~~~~~~~~~~~p~p~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~--~~ylkdD~l~Irv~v~~ 185 (186)
T cd03777 117 VTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDT 185 (186)
T ss_pred EEEEEEcCCCccccccceeccCCccccccCCccCCCCCCCchheeEHHHhcc--CCcEeCCEEEEEEEEec
Confidence 999999997521 111 0111245752 2 45799999999999986 68999999999999863
No 20
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter
Probab=99.91 E-value=4.7e-24 Score=169.40 Aligned_cols=125 Identities=26% Similarity=0.475 Sum_probs=101.7
Q ss_pred cEEEEEEcceeccC-------CceeecceEEeC--CceEEEEEEeCCCCCCCCCeEEEEEEeCCCC---CCCceEEEEEE
Q 021574 176 SKYVWKVENFSKLD-------TRYEESQVFGAG--NHKWKIVLYPRGNGCGDGDHLSLYLALGDST---VDGIKVYAEYT 243 (310)
Q Consensus 176 ~~~~~~i~~fs~~~-------~~~~~S~~f~~g--g~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~---~~~w~~~~~~~ 243 (310)
+.|+|+|.+|+.++ ++.+.|+.|.+| |++|+|++||+|...+.++|||+||++.++. ..+|++.++|+
T Consensus 1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i~~yP~G~~~~~~~~lsl~L~l~~~~~d~~~~w~~~~~~~ 80 (149)
T cd00270 1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDGTGKGTHLSLFVHVMKGEYDALLEWPFRGKIT 80 (149)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCccccCCccceEE
Confidence 47999999999974 358999999999 9999999999998766678999999998765 35799999999
Q ss_pred EEEEcCCCC---ceeeec----ccceeec-----cCcCCccccceecccccCCCCCCeeECCEEEEEEEEE
Q 021574 244 LRILDQLGA---KHKSLQ----AAKDWFQ-----SPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVT 302 (310)
Q Consensus 244 ~~l~n~~~~---~~~~~~----~~~~~F~-----~~~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V~ 302 (310)
|.|+||.++ ++.... .....|. ....+|||.+||++++|++ .|||+||+|+|+|+|.
T Consensus 81 ~~l~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~~--~gfl~dD~l~I~~~v~ 149 (149)
T cd00270 81 LTLLDQSDDSKRKHITETFMPDPNSSAFQRPPTGENNIGFGYPEFVPLEKLES--RGYVKDDTLFIKVEVD 149 (149)
T ss_pred EEEECCCCccccCceEEEEEcCCchHhhcCCCcccCCCCcCcceEeEHHHhcc--CCCEeCCEEEEEEEEC
Confidence 999999874 221100 1123454 1356899999999999986 5899999999999983
No 21
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp
Probab=99.91 E-value=3.2e-24 Score=169.60 Aligned_cols=125 Identities=25% Similarity=0.307 Sum_probs=100.7
Q ss_pred cEEEEEEcceeccC-----Cc--eeecceEEe--CCceEEEEEEeCCCCCCCCCeEEEEEEeCCCC---CCCceEEEEEE
Q 021574 176 SKYVWKVENFSKLD-----TR--YEESQVFGA--GNHKWKIVLYPRGNGCGDGDHLSLYLALGDST---VDGIKVYAEYT 243 (310)
Q Consensus 176 ~~~~~~i~~fs~~~-----~~--~~~S~~f~~--gg~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~---~~~w~~~~~~~ 243 (310)
+.|.|+|.+|+.++ ++ .+.|+.|.+ ||++|+|++||+|...+..++||+||+++.++ ..+|++.++++
T Consensus 1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i~~yP~G~~~~~~~~lS~~L~l~~~~~d~~l~wpv~a~~~ 80 (147)
T cd03776 1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCARLNLSLPEARCPNYISLFVHLMQGENDSHLDWPFQGTIT 80 (147)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCcccCCcccceeE
Confidence 47999999999754 33 488999986 79999999999999877778999999998865 34799999999
Q ss_pred EEEEcCCCCce-ee--e--cccceeecc-----CcCCccccceecccccCCCCCCeeECCEEEEEEEEE
Q 021574 244 LRILDQLGAKH-KS--L--QAAKDWFQS-----PNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVT 302 (310)
Q Consensus 244 ~~l~n~~~~~~-~~--~--~~~~~~F~~-----~~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V~ 302 (310)
|.|+||.++.. .. . ......|.. ...+|||.+||++++|++ .+||+||+|+|+|+|.
T Consensus 81 ~~lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le~--~~yl~dD~l~I~c~V~ 147 (147)
T cd03776 81 LTLLDQSEPRQNIHETMMSKPELLAFQRPTTDRNPKGFGYVEFAHIEDLLQ--RGFVKNDTLLIKIEVN 147 (147)
T ss_pred EEEECCCcccCccEEEEEcCCChHhhcCCCcCCCCCCeeEceeeEHHHhhh--CCCccCCEEEEEEEEC
Confidence 99999986432 11 0 112245653 345799999999999986 5899999999999984
No 22
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR
Probab=99.91 E-value=8.3e-24 Score=168.13 Aligned_cols=125 Identities=26% Similarity=0.419 Sum_probs=102.0
Q ss_pred cEEEEEEcceeccC-------CceeecceEEeC--CceEEEEEEeCCCCCCCCCeEEEEEEeCCCC-C--CCceEEEEEE
Q 021574 176 SKYVWKVENFSKLD-------TRYEESQVFGAG--NHKWKIVLYPRGNGCGDGDHLSLYLALGDST-V--DGIKVYAEYT 243 (310)
Q Consensus 176 ~~~~~~i~~fs~~~-------~~~~~S~~f~~g--g~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~-~--~~w~~~~~~~ 243 (310)
+.|.|+|.+|+.++ +..+.|+.|++| |++|+|++||||...+.+++||+||++++++ . ..|++.++++
T Consensus 1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~vs~~l~l~~ge~d~~l~wp~~a~~~ 80 (154)
T cd03781 1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQVSAFLNGNGSGEGSHLSVYIRVLPGEYDNLLEWPFSHRIT 80 (154)
T ss_pred CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEEEEECCCCCCCCCCEEEEEEEEecCCcccccCCceeeEEE
Confidence 57999999999875 257999999999 9999999999999887788999999999876 2 4899999999
Q ss_pred EEEEcCCCC--c---eeeec----ccceeecc--------CcCCccccceecccccCCCCCCeeECCEEEEEEEEE
Q 021574 244 LRILDQLGA--K---HKSLQ----AAKDWFQS--------PNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVT 302 (310)
Q Consensus 244 ~~l~n~~~~--~---~~~~~----~~~~~F~~--------~~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V~ 302 (310)
|.|++|.+. . +.... .....|+. .+.+||+.+||++++|+. ++||+||+|+|+|+|.
T Consensus 81 ~~llDq~~~~~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le~--~~yl~dD~l~Irc~v~ 154 (154)
T cd03781 81 FTLLDQSDPSLSKPQHITETFTPDPTWKNFQKPSASRLDESTLGFGYPKFISHEDLKK--RNYIKDDAIFLRASVE 154 (154)
T ss_pred EEEECCCCCccccCcceEEEEEcCCchhhhcCCcccccCCCCCccchhHeeEHHHHhh--CCcccCCEEEEEEEeC
Confidence 999999764 1 11000 11234542 345799999999999986 6899999999999983
No 23
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z
Probab=99.90 E-value=5e-23 Score=162.02 Aligned_cols=127 Identities=26% Similarity=0.398 Sum_probs=105.4
Q ss_pred ccCcEEEEEEcceeccC-----C--ceeecceEEe--CCceEEEEEEeCCCCCCCCCeEEEEEEeCCCC---CCCceEEE
Q 021574 173 TYSSKYVWKVENFSKLD-----T--RYEESQVFGA--GNHKWKIVLYPRGNGCGDGDHLSLYLALGDST---VDGIKVYA 240 (310)
Q Consensus 173 ~~~~~~~~~i~~fs~~~-----~--~~~~S~~f~~--gg~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~---~~~w~~~~ 240 (310)
...+.++|+|.||+.+. + ..++||.|+. +|++|+|++||||++.+.+.|||+|+++++++ ..+||+..
T Consensus 16 ~~~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g~~~g~~LSly~~l~~Ge~D~~L~WPf~~ 95 (164)
T cd03778 16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ 95 (164)
T ss_pred ccCCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEecCCcCcccCCceee
Confidence 44799999999999986 2 3789999988 48999999999999888888999999999998 36899999
Q ss_pred EEEEEEEcCCCCceeeeccc-----ceeecc----CcCCccccceecccccCCCCCCeeECCEEEEEEEE
Q 021574 241 EYTLRILDQLGAKHKSLQAA-----KDWFQS----PNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEV 301 (310)
Q Consensus 241 ~~~~~l~n~~~~~~~~~~~~-----~~~F~~----~~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V 301 (310)
+++|.|+||++..+.. ... ...|.+ .+.+|||+.|++.++|... +|||+||+|.|+|.|
T Consensus 96 ~itl~llDQ~~r~hi~-~~~~pd~~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~~-~~Yv~dDtlfIk~~V 163 (164)
T cd03778 96 KVTLMLLDQNNREHVI-DAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKXEAK-NSYVRDDAIFIKAIV 163 (164)
T ss_pred EEEEEEECCCCCCcce-eEEEcCcchHhcCCCCcccccCcCcceEEEhhHcccc-CCcccCCeEEEEEEE
Confidence 9999999998765543 111 113532 3457999999999999864 699999999999987
No 24
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces. They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co
Probab=99.89 E-value=1.1e-22 Score=161.31 Aligned_cols=124 Identities=25% Similarity=0.381 Sum_probs=98.1
Q ss_pred cEEEEEEcceeccC-----CceeecceE-EeCCceEEEEEEeCCCCCCCCCeEEEEEEeCCCC---CCCce-EEEEEEEE
Q 021574 176 SKYVWKVENFSKLD-----TRYEESQVF-GAGNHKWKIVLYPRGNGCGDGDHLSLYLALGDST---VDGIK-VYAEYTLR 245 (310)
Q Consensus 176 ~~~~~~i~~fs~~~-----~~~~~S~~f-~~gg~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~---~~~w~-~~~~~~~~ 245 (310)
..|+|+|.||+.++ +..+.|++| .+||++|+|++||+|... .++||||||++++++ ..+|+ +.++++|.
T Consensus 2 p~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~~-~~~~lSlyL~L~~g~~d~~L~WP~v~a~~t~~ 80 (167)
T cd03771 2 PEAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQVGLYPNGTES-YPGYTGLYFHLCSGENDDVLEWPCPNRQATMT 80 (167)
T ss_pred CeEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEEEEEeCCCCC-CCCcceEEEEEecCCccccccCcceeEEEEEE
Confidence 46999999999985 358999998 889999999999999987 778999999999876 45899 58999999
Q ss_pred EEcCCCCc----eeee---ccc--------ceeecc-----------------CcCCccccceecccccCCCCCCeeECC
Q 021574 246 ILDQLGAK----HKSL---QAA--------KDWFQS-----------------PNLTWGWTRFISFSELNKPGTGFLVND 293 (310)
Q Consensus 246 l~n~~~~~----~~~~---~~~--------~~~F~~-----------------~~~~~G~~~fi~~~~L~~~~~g~l~dD 293 (310)
|++|.... +... ... ...|.+ .+.+|||++||++++|+. .+||+||
T Consensus 81 LlDQ~~~~~~r~~~~~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~~--r~ylk~d 158 (167)
T cd03771 81 LLDQDPDIQQRMSNQRSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLRR--RDFLKGD 158 (167)
T ss_pred EECCCCcccccCcceEEEecCCcccccccccccccCCccccccccccccccccccCccccccceeHHHhcc--CCCCcCC
Confidence 99997411 1110 000 011222 234899999999999997 5699999
Q ss_pred EEEEEEEEE
Q 021574 294 VCVVEAEVT 302 (310)
Q Consensus 294 ~l~i~~~V~ 302 (310)
+|.|+++++
T Consensus 159 tl~i~~~~~ 167 (167)
T cd03771 159 DLIILLDFE 167 (167)
T ss_pred EEEEEEEeC
Confidence 999999873
No 25
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma
Probab=99.88 E-value=1.9e-21 Score=149.43 Aligned_cols=122 Identities=39% Similarity=0.691 Sum_probs=101.9
Q ss_pred EEEEEEcceeccCCceeecceEEeCCceEEEEEEeCCCCCCCCCeEEEEEEeCCCC--CCCceEEEEEEEEEEcCCCCce
Q 021574 177 KYVWKVENFSKLDTRYEESQVFGAGNHKWKIVLYPRGNGCGDGDHLSLYLALGDST--VDGIKVYAEYTLRILDQLGAKH 254 (310)
Q Consensus 177 ~~~~~i~~fs~~~~~~~~S~~f~~gg~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~--~~~w~~~~~~~~~l~n~~~~~~ 254 (310)
+|+|+|.+|+...++.+.|+.|.++|++|+|.+||+|... ..++||+||+|.... ...|++.++++|.|+|+++.+.
T Consensus 2 ~~~~~i~~~~~~~~~~~~S~~f~~~g~~W~l~~~p~~~~~-~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 80 (126)
T cd00121 2 KHTWKIVNFSELEGESIYSPPFEVGGYKWRIRIYPNGDGE-SGDYLSLYLELDKGESDLEKWSVRAEFTLKLVNQNGGKS 80 (126)
T ss_pred EEEEEECCCCCCCCcEEECCCEEEcCEeEEEEEEcCCCCC-CCCEEEEEEEecCCCCCCCCCcEEEEEEEEEECCCCCcc
Confidence 6899999999966789999999999999999999999765 467999999998765 2579999999999999985544
Q ss_pred eeecccceeec-cCcCCccccceecccccCCCCCCeeECCEEEEEEEEE
Q 021574 255 KSLQAAKDWFQ-SPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVT 302 (310)
Q Consensus 255 ~~~~~~~~~F~-~~~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V~ 302 (310)
.. ......|. ....+|||.+||++++|+++ ++++||+|+|+|+|.
T Consensus 81 ~~-~~~~~~~~~~~~~~~G~~~fi~~~~l~~~--~~~~~d~l~i~~~v~ 126 (126)
T cd00121 81 LS-KSFTHVFFSEKGSGWGFPKFISWDDLEDS--YYLVDDSLTIEVEVK 126 (126)
T ss_pred ce-EeccCCcCCCCCCCCChHHeeEHHHhccC--CcEECCEEEEEEEEC
Confidence 43 33334443 45689999999999999974 349999999999984
No 26
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma
Probab=99.87 E-value=3.7e-21 Score=147.77 Aligned_cols=125 Identities=36% Similarity=0.525 Sum_probs=100.8
Q ss_pred ceEEEEEccccccccccccceEEeccEEeCCeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCCCCCcEEEEEEEEEEEe
Q 021574 21 AHYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNVKDHISLYLAMADTNSLNFGLEVYAVFRLFLLD 100 (310)
Q Consensus 21 ~~~~w~I~~fs~~~~~~~~~~~~S~~f~~~G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~~~~w~~~~~f~~~l~n 100 (310)
++|+|+|.+|+... ++ .++|+.|.++|++|+|.+||+|.. . ..+|||+||.|.........|++.++|+|+|+|
T Consensus 1 ~~~~~~i~~~~~~~---~~-~~~S~~f~~~g~~W~l~~~p~~~~-~-~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~ 74 (126)
T cd00121 1 GKHTWKIVNFSELE---GE-SIYSPPFEVGGYKWRIRIYPNGDG-E-SGDYLSLYLELDKGESDLEKWSVRAEFTLKLVN 74 (126)
T ss_pred CEEEEEECCCCCCC---Cc-EEECCCEEEcCEeEEEEEEcCCCC-C-CCCEEEEEEEecCCCCCCCCCcEEEEEEEEEEC
Confidence 47999999999921 23 899999999999999999999986 2 678999999998776545679999999999999
Q ss_pred cCCCceeEEecceeeeec-CCccccccceeeeccccccCCCCeEEcCeEEEEEEEE
Q 021574 101 QNQDNYLVVQNAKERRFN-GLKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVF 155 (310)
Q Consensus 101 ~~~~~~~~~~~~~~~~F~-~~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~ 155 (310)
+++.+.... .....|. ....+|||.+||++++|.+ ..++.||+|+|+|+|.
T Consensus 75 ~~~~~~~~~--~~~~~~~~~~~~~~G~~~fi~~~~l~~--~~~~~~d~l~i~~~v~ 126 (126)
T cd00121 75 QNGGKSLSK--SFTHVFFSEKGSGWGFPKFISWDDLED--SYYLVDDSLTIEVEVK 126 (126)
T ss_pred CCCCccceE--eccCCcCCCCCCCCChHHeeEHHHhcc--CCcEECCEEEEEEEEC
Confidence 984433322 1233442 4568999999999999993 4449999999999983
No 27
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []. Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....
Probab=99.85 E-value=9.7e-21 Score=144.39 Aligned_cols=118 Identities=35% Similarity=0.572 Sum_probs=97.5
Q ss_pred EccccccccccccceEEeccEEeCCeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCCC-CCcEEEEEEEEEEEecCCCc
Q 021574 27 IKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNVKDHISLYLAMADTNSLN-FGLEVYAVFRLFLLDQNQDN 105 (310)
Q Consensus 27 I~~fs~~~~~~~~~~~~S~~f~~~G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~~-~~w~~~~~f~~~l~n~~~~~ 105 (310)
|+|||++.. ++..+.|+.|.++|++|+|.+||+|+ .+++++||.|..+..+. ..|++.++++|+|+++.++.
T Consensus 1 i~nfs~l~~--~~~~~~s~~~~~~g~~W~l~~~~~~~-----~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 73 (119)
T PF00917_consen 1 IKNFSKLKE--GEEYSSSFVFSHGGYPWRLKVYPKGN-----GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKS 73 (119)
T ss_dssp ETTGGGHHT--SEEEEEEEESSTTSEEEEEEEETTES-----TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCE
T ss_pred CcccceEeC--CCcEECCCeEEECCEEEEEEEEeCCC-----cCcEEEEEEEeecccccccceeeeEEEEEEEecCCCCc
Confidence 789999972 23255568888999999999999975 58999999999987653 68999999999999999987
Q ss_pred eeEEecceeeeecCCccccccceeeeccccccCCCCeEEcCeEEEEEEEEE
Q 021574 106 YLVVQNAKERRFNGLKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVFV 156 (310)
Q Consensus 106 ~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~v 156 (310)
.... ...+.|... .+|||.+||++++|.++ .|+.||+|+|+|+|+|
T Consensus 74 ~~~~--~~~~~F~~~-~~~g~~~fi~~~~l~~~--~fl~dd~l~ie~~v~I 119 (119)
T PF00917_consen 74 ISKR--IKSHSFNNP-SSWGWSSFISWEDLEDP--YFLVDDSLTIEVEVKI 119 (119)
T ss_dssp EEEE--EECEEECTT-SEEEEEEEEEHHHHTTC--TTSBTTEEEEEEEEEE
T ss_pred ceee--eeeeEEeee-cccchhheeEHHHhCcc--CCeECCEEEEEEEEEC
Confidence 4332 125788774 89999999999999943 3899999999999986
No 28
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both
Probab=99.84 E-value=1.9e-20 Score=146.65 Aligned_cols=133 Identities=21% Similarity=0.365 Sum_probs=104.0
Q ss_pred CceEEEEEccccccccc-cccceEEeccEEe-CCeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCC-CCCcEE-EEEEE
Q 021574 20 PAHYVVKIKSFSFLAEK-AVEVKYESAAFEA-GGYKWKLVLYPNGNESKNVKDHISLYLAMADTNSL-NFGLEV-YAVFR 95 (310)
Q Consensus 20 ~~~~~w~I~~fs~~~~~-~~~~~~~S~~f~~-~G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~-~~~w~~-~~~f~ 95 (310)
+..+.|+|.||+++.+. .....++||+|.. .||+.+|++||+|....+.+.|+|+|+++++++.| .+.||+ .-+.+
T Consensus 1 cp~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l~~~lng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~~~it 80 (167)
T cd03783 1 CPNAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGVSLYPLSNESDYSGNYTGLYFHLCSGENDAVLEWPALNRQAI 80 (167)
T ss_pred CCceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEEEEEecCCCCCCCCCEEEEEEEEecccCCCcccCCCcCCEEE
Confidence 45789999999998764 2334899999987 59999999999998633567899999999999998 889995 56999
Q ss_pred EEEEecCCC---ceeE----Eecc--ee------eeecC--------------CccccccceeeeccccccCCCCeEEcC
Q 021574 96 LFLLDQNQD---NYLV----VQNA--KE------RRFNG--------------LKLEWGFDQFISHKAFKEASNGYLVED 146 (310)
Q Consensus 96 ~~l~n~~~~---~~~~----~~~~--~~------~~F~~--------------~~~~~G~~~fi~~~~l~~~~~~yl~~d 146 (310)
|+|++|++. ..+. .++. .. ..|+. .+.++||..||++++|. +.+||+||
T Consensus 81 l~llDQ~~~~~~r~~~~~sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L~--~r~yikdD 158 (167)
T cd03783 81 ITVLDQDPDVRLRMSSSRSFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQLR--RRSFLKND 158 (167)
T ss_pred EEEEcCCcchhhccccceeeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHHh--hCCcccCC
Confidence 999999752 1111 1111 10 11433 24589999999999999 69999999
Q ss_pred eEEEEEEE
Q 021574 147 TCVFGAEV 154 (310)
Q Consensus 147 ~l~i~~~v 154 (310)
+|.|.+++
T Consensus 159 tlfI~~~~ 166 (167)
T cd03783 159 DLIIFVDF 166 (167)
T ss_pred eEEEEEec
Confidence 99999876
No 29
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []. Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....
Probab=99.84 E-value=1e-20 Score=144.30 Aligned_cols=114 Identities=37% Similarity=0.716 Sum_probs=94.5
Q ss_pred EcceeccC-Cc-eeecceEEeCCceEEEEEEeCCCCCCCCCeEEEEEEeCCCC-C--CCceEEEEEEEEEEcCCCCceee
Q 021574 182 VENFSKLD-TR-YEESQVFGAGNHKWKIVLYPRGNGCGDGDHLSLYLALGDST-V--DGIKVYAEYTLRILDQLGAKHKS 256 (310)
Q Consensus 182 i~~fs~~~-~~-~~~S~~f~~gg~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~-~--~~w~~~~~~~~~l~n~~~~~~~~ 256 (310)
|+||+.+. ++ ...|+.+.++|++|+|.+||+|+ ++++++||+|..+. . ..|++.+++++.++++.++....
T Consensus 1 i~nfs~l~~~~~~~~s~~~~~~g~~W~l~~~~~~~----~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 76 (119)
T PF00917_consen 1 IKNFSKLKEGEEYSSSFVFSHGGYPWRLKVYPKGN----GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKSISK 76 (119)
T ss_dssp ETTGGGHHTSEEEEEEEESSTTSEEEEEEEETTES----TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCEEEE
T ss_pred CcccceEeCCCcEECCCeEEECCEEEEEEEEeCCC----cCcEEEEEEEeecccccccceeeeEEEEEEEecCCCCccee
Confidence 68999997 33 34458888999999999999987 46999999999987 3 48999999999999998877333
Q ss_pred ecccceeeccCcCCccccceecccccCCCCCCeeECCEEEEEEEEEE
Q 021574 257 LQAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTV 303 (310)
Q Consensus 257 ~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V~v 303 (310)
....+.|.. ..+|||.+||+|++|+++. |++||+|+|+|+|+|
T Consensus 77 -~~~~~~F~~-~~~~g~~~fi~~~~l~~~~--fl~dd~l~ie~~v~I 119 (119)
T PF00917_consen 77 -RIKSHSFNN-PSSWGWSSFISWEDLEDPY--FLVDDSLTIEVEVKI 119 (119)
T ss_dssp -EEECEEECT-TSEEEEEEEEEHHHHTTCT--TSBTTEEEEEEEEEE
T ss_pred -eeeeeEEee-ecccchhheeEHHHhCccC--CeECCEEEEEEEEEC
Confidence 222578864 4789999999999999863 899999999999987
No 30
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f
Probab=99.84 E-value=2.1e-20 Score=145.50 Aligned_cols=131 Identities=20% Similarity=0.344 Sum_probs=104.8
Q ss_pred CceEEEEEccccccccc-cccceEEeccEE-eCCeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCC-CCCcEEE-EEEE
Q 021574 20 PAHYVVKIKSFSFLAEK-AVEVKYESAAFE-AGGYKWKLVLYPNGNESKNVKDHISLYLAMADTNSL-NFGLEVY-AVFR 95 (310)
Q Consensus 20 ~~~~~w~I~~fs~~~~~-~~~~~~~S~~f~-~~G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~-~~~w~~~-~~f~ 95 (310)
+..+.|+|.||+++.++ +....++||+|. ..||+.++.+||||.+ .+ .+|||+|+++++++.| .++||+. -+++
T Consensus 1 cp~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l~~ylnG~g-~~-~~~lsl~~~lm~Ge~D~~L~WPf~~~qit 78 (167)
T cd03782 1 CPEHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQVGLYLNGTD-DY-PGNLAIYLHLTSGPNDDQLQWPCPWQQAT 78 (167)
T ss_pred CCcEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEEEEEecCCC-CC-CCEEEEEEEEeccCCCccccCCCcCCeEE
Confidence 45789999999999775 344489999995 4999999999999987 33 6899999999999998 8899999 8999
Q ss_pred EEEEecCC---CceeEE------ecceee---ee--cCC-----------------ccccccceeeeccccccCCCCeEE
Q 021574 96 LFLLDQNQ---DNYLVV------QNAKER---RF--NGL-----------------KLEWGFDQFISHKAFKEASNGYLV 144 (310)
Q Consensus 96 ~~l~n~~~---~~~~~~------~~~~~~---~F--~~~-----------------~~~~G~~~fi~~~~l~~~~~~yl~ 144 (310)
|+|++|++ ...+.. ++.... .| ... +.++||+.||++++|. ++.||+
T Consensus 79 ~~LlDQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L~--~r~yik 156 (167)
T cd03782 79 MMLLDQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRLR--SRDFIK 156 (167)
T ss_pred EEEEcCCCchhhccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHHHHh--hcCccc
Confidence 99999975 222211 111111 34 222 5789999999999999 689999
Q ss_pred cCeEEEEEEE
Q 021574 145 EDTCVFGAEV 154 (310)
Q Consensus 145 ~d~l~i~~~v 154 (310)
||.+.|-+++
T Consensus 157 dD~ifi~~~~ 166 (167)
T cd03782 157 GDDVIFLLTM 166 (167)
T ss_pred CCeEEEEEec
Confidence 9999998875
No 31
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both
Probab=99.77 E-value=1.5e-18 Score=136.00 Aligned_cols=125 Identities=26% Similarity=0.420 Sum_probs=98.0
Q ss_pred cEEEEEEcceeccC-----CceeecceEEe-CCceEEEEEEeCCCCC-CCCCeEEEEEEeCCCC---CCCceE-EEEEEE
Q 021574 176 SKYVWKVENFSKLD-----TRYEESQVFGA-GNHKWKIVLYPRGNGC-GDGDHLSLYLALGDST---VDGIKV-YAEYTL 244 (310)
Q Consensus 176 ~~~~~~i~~fs~~~-----~~~~~S~~f~~-gg~~w~i~~yp~g~~~-~~~~~ls~yL~~~~~~---~~~w~~-~~~~~~ 244 (310)
..+.|+|.||+++. +..++||.|+. .|++.+|++||+|++. +.+.|+|+|+++++++ ..+||+ .-+++|
T Consensus 2 p~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l~~~lng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~~~itl 81 (167)
T cd03783 2 PNAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGVSLYPLSNESDYSGNYTGLYFHLCSGENDAVLEWPALNRQAII 81 (167)
T ss_pred CceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEEEEEecCCCCCCCCCEEEEEEEEecccCCCcccCCCcCCEEEE
Confidence 35899999999876 35799999988 4999999999999864 5678999999999998 468995 569999
Q ss_pred EEEcCCCCc----eeee---ccc---------ceeeccC--------------cCCccccceecccccCCCCCCeeECCE
Q 021574 245 RILDQLGAK----HKSL---QAA---------KDWFQSP--------------NLTWGWTRFISFSELNKPGTGFLVNDV 294 (310)
Q Consensus 245 ~l~n~~~~~----~~~~---~~~---------~~~F~~~--------------~~~~G~~~fi~~~~L~~~~~g~l~dD~ 294 (310)
.|++|++.. +... ... ...|++. +.++||+.|++++.|+. ++||+||+
T Consensus 82 ~llDQ~~~~~~r~~~~~sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L~~--r~yikdDt 159 (167)
T cd03783 82 TVLDQDPDVRLRMSSSRSFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQLRR--RSFLKNDD 159 (167)
T ss_pred EEEcCCcchhhccccceeeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHHhh--CCcccCCe
Confidence 999997411 1110 000 1114433 35899999999999997 78999999
Q ss_pred EEEEEEEE
Q 021574 295 CVVEAEVT 302 (310)
Q Consensus 295 l~i~~~V~ 302 (310)
|.|.++++
T Consensus 160 lfI~~~~~ 167 (167)
T cd03783 160 LIIFVDFE 167 (167)
T ss_pred EEEEEecC
Confidence 99998763
No 32
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f
Probab=99.77 E-value=2.3e-18 Score=134.08 Aligned_cols=123 Identities=20% Similarity=0.301 Sum_probs=98.2
Q ss_pred cEEEEEEcceeccC-----CceeecceEEe-CCceEEEEEEeCCCCCCCCCeEEEEEEeCCCC---CCCceEE-EEEEEE
Q 021574 176 SKYVWKVENFSKLD-----TRYEESQVFGA-GNHKWKIVLYPRGNGCGDGDHLSLYLALGDST---VDGIKVY-AEYTLR 245 (310)
Q Consensus 176 ~~~~~~i~~fs~~~-----~~~~~S~~f~~-gg~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~---~~~w~~~-~~~~~~ 245 (310)
..+.|+|.||+++. +..++||.|+. .|++.+|++||||.+.+ +.|||+|+++++++ ..+||+. .+++|.
T Consensus 2 p~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l~~ylnG~g~~-~~~lsl~~~lm~Ge~D~~L~WPf~~~qit~~ 80 (167)
T cd03782 2 PEHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQVGLYLNGTDDY-PGNLAIYLHLTSGPNDDQLQWPCPWQQATMM 80 (167)
T ss_pred CcEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEEEEEecCCCCC-CCEEEEEEEEeccCCCccccCCCcCCeEEEE
Confidence 35899999999976 35799999877 69999999999999865 67999999999998 4589999 899999
Q ss_pred EEcCCC---C-ceeee----c-c---c-ceee--ccC-----------------cCCccccceecccccCCCCCCeeECC
Q 021574 246 ILDQLG---A-KHKSL----Q-A---A-KDWF--QSP-----------------NLTWGWTRFISFSELNKPGTGFLVND 293 (310)
Q Consensus 246 l~n~~~---~-~~~~~----~-~---~-~~~F--~~~-----------------~~~~G~~~fi~~~~L~~~~~g~l~dD 293 (310)
|++|++ . .+... + . . ...| .+. +.++||+.||++++|+. +.||+||
T Consensus 81 LlDQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L~~--r~yikdD 158 (167)
T cd03782 81 LLDQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRLRS--RDFIKGD 158 (167)
T ss_pred EEcCCCchhhccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHHHHhh--cCcccCC
Confidence 999974 1 12220 0 0 0 1134 322 46899999999999997 6799999
Q ss_pred EEEEEEEE
Q 021574 294 VCVVEAEV 301 (310)
Q Consensus 294 ~l~i~~~V 301 (310)
++.|-+++
T Consensus 159 ~ifi~~~~ 166 (167)
T cd03782 159 DVIFLLTM 166 (167)
T ss_pred eEEEEEec
Confidence 99998876
No 33
>smart00061 MATH meprin and TRAF homology.
Probab=99.70 E-value=1.9e-16 Score=115.51 Aligned_cols=94 Identities=29% Similarity=0.416 Sum_probs=78.7
Q ss_pred EEEEEccccccccccccceEEeccEEeCCeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCCCCCcEEEEEEEEEEEecC
Q 021574 23 YVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNVKDHISLYLAMADTNSLNFGLEVYAVFRLFLLDQN 102 (310)
Q Consensus 23 ~~w~I~~fs~~~~~~~~~~~~S~~f~~~G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~~~~w~~~~~f~~~l~n~~ 102 (310)
++|+|+||+.+.. ++ .++|++|.++|++|+|.+||+ .+|||+||.|.+....+..|++.|+|+|+|+|++
T Consensus 2 ~~~~~~~~~~~~~--~~-~~~S~~f~~~g~~W~i~~~p~-------~~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~ 71 (95)
T smart00061 2 LSHTFKNVSRLEE--GE-SYFSPSEEHFNIPWRLKIYRK-------NGFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQN 71 (95)
T ss_pred ceeEEEchhhccc--Cc-eEeCChhEEcCceeEEEEEEc-------CCEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCC
Confidence 5799999999842 23 899999999999999999998 3799999999877655558999999999999999
Q ss_pred CCceeEEecceeeeecCCccccccceee
Q 021574 103 QDNYLVVQNAKERRFNGLKLEWGFDQFI 130 (310)
Q Consensus 103 ~~~~~~~~~~~~~~F~~~~~~~G~~~fi 130 (310)
++... ....+.|.. ..+|||.+||
T Consensus 72 ~~~~~---~~~~~~F~~-~~~~G~~~fi 95 (95)
T smart00061 72 GKSLS---KKDKHVFEK-PSGWGFSKFI 95 (95)
T ss_pred CCEEe---eeeeEEEcC-CCccceeeEC
Confidence 86542 235788886 6889999886
No 34
>smart00061 MATH meprin and TRAF homology.
Probab=99.69 E-value=2.3e-16 Score=115.05 Aligned_cols=91 Identities=27% Similarity=0.446 Sum_probs=77.8
Q ss_pred EEEEEcceeccC-CceeecceEEeCCceEEEEEEeCCCCCCCCCeEEEEEEeCCCC--CCCceEEEEEEEEEEcCCCCce
Q 021574 178 YVWKVENFSKLD-TRYEESQVFGAGNHKWKIVLYPRGNGCGDGDHLSLYLALGDST--VDGIKVYAEYTLRILDQLGAKH 254 (310)
Q Consensus 178 ~~~~i~~fs~~~-~~~~~S~~f~~gg~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~--~~~w~~~~~~~~~l~n~~~~~~ 254 (310)
++|.|+||+.+. ++.+.|+.|.++|++|+|.+||+ ++|||+||.|.+.. ...|++.|+++|.|+||++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~S~~f~~~g~~W~i~~~p~------~~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~~~~~ 75 (95)
T smart00061 2 LSHTFKNVSRLEEGESYFSPSEEHFNIPWRLKIYRK------NGFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQNGKSL 75 (95)
T ss_pred ceeEEEchhhcccCceEeCChhEEcCceeEEEEEEc------CCEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCCCCEE
Confidence 579999999985 78899999999999999999999 36999999998765 3379999999999999998655
Q ss_pred eeecccceeeccCcCCcccccee
Q 021574 255 KSLQAAKDWFQSPNLTWGWTRFI 277 (310)
Q Consensus 255 ~~~~~~~~~F~~~~~~~G~~~fi 277 (310)
. ....+.|.. ..+|||.+||
T Consensus 76 -~-~~~~~~F~~-~~~~G~~~fi 95 (95)
T smart00061 76 -S-KKDKHVFEK-PSGWGFSKFI 95 (95)
T ss_pred -e-eeeeEEEcC-CCccceeeEC
Confidence 2 345678875 6789999885
No 35
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=7.4e-15 Score=136.37 Aligned_cols=129 Identities=29% Similarity=0.553 Sum_probs=109.9
Q ss_pred cCcEEEEEEcceeccCCceeecceEEeCCceEEEEEEeCCCCCCCCCeEEEEEEeCCCC----C-CCceEEEEEEEEEEc
Q 021574 174 YSSKYVWKVENFSKLDTRYEESQVFGAGNHKWKIVLYPRGNGCGDGDHLSLYLALGDST----V-DGIKVYAEYTLRILD 248 (310)
Q Consensus 174 ~~~~~~~~i~~fs~~~~~~~~S~~f~~gg~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~----~-~~w~~~~~~~~~l~n 248 (310)
....++|+|++++.+.. +..||.|.+|++.|+|.++|+|+... .+||||+....+ . ..|.|+|+|.|.|-|
T Consensus 37 ~~~sftW~vk~wsel~~-k~~Sp~F~vg~~twki~lfPqG~nq~---~~sVyLe~~pqe~e~~~gk~~~ccaqFaf~Is~ 112 (1089)
T COG5077 37 LEMSFTWKVKRWSELAK-KVESPPFSVGGHTWKIILFPQGNNQC---NVSVYLEYEPQELEETGGKYYDCCAQFAFDISN 112 (1089)
T ss_pred hhcccceecCChhhhhh-hccCCcccccCeeEEEEEecccCCcc---ccEEEEEeccchhhhhcCcchhhhhheeeecCC
Confidence 45679999999999984 78999999999999999999998643 389999987654 2 359999999999999
Q ss_pred CCCCceeeecccceeeccCcCCccccceecccccCCCCCC---eeECCEEEEEEEEEEEcc
Q 021574 249 QLGAKHKSLQAAKDWFQSPNLTWGWTRFISFSELNKPGTG---FLVNDVCVVEAEVTVLGT 306 (310)
Q Consensus 249 ~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~g---~l~dD~l~i~~~V~v~~~ 306 (310)
...+.....+.+.++|+....+||+.+|+.+..|..|..| |+.+|++.|++.|+|++.
T Consensus 113 p~~pti~~iN~sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkd 173 (1089)
T COG5077 113 PKYPTIEYINKSHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKD 173 (1089)
T ss_pred CCCCchhhhhcccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeC
Confidence 9875533336788999988899999999999999876554 789999999999999976
No 36
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.5e-14 Score=134.43 Aligned_cols=135 Identities=30% Similarity=0.486 Sum_probs=111.5
Q ss_pred ccccCCceEEEEEccccccccccccceEEeccEEeCCeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCC---CCCcEEE
Q 021574 15 TSHVSPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNVKDHISLYLAMADTNSL---NFGLEVY 91 (310)
Q Consensus 15 ~~~~~~~~~~w~I~~fs~~~~~~~~~~~~S~~f~~~G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~---~~~w~~~ 91 (310)
+.+....+++|+|++++.+.+ +..||+|.+||+.|+|.++|+|+. ..-+|+||+....+.. ...|.|+
T Consensus 33 ~Ee~~~~sftW~vk~wsel~~-----k~~Sp~F~vg~~twki~lfPqG~n----q~~~sVyLe~~pqe~e~~~gk~~~cc 103 (1089)
T COG5077 33 VEELLEMSFTWKVKRWSELAK-----KVESPPFSVGGHTWKIILFPQGNN----QCNVSVYLEYEPQELEETGGKYYDCC 103 (1089)
T ss_pred HHHHhhcccceecCChhhhhh-----hccCCcccccCeeEEEEEecccCC----ccccEEEEEeccchhhhhcCcchhhh
Confidence 345567899999999999965 678999999999999999999976 2239999998765422 2349999
Q ss_pred EEEEEEEEecCCCceeEEecceeeeecCCccccccceeeeccccccCCCC---eEEcCeEEEEEEEEE-Eee
Q 021574 92 AVFRLFLLDQNQDNYLVVQNAKERRFNGLKLEWGFDQFISHKAFKEASNG---YLVEDTCVFGAEVFV-KER 159 (310)
Q Consensus 92 ~~f~~~l~n~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~~~~~~---yl~~d~l~i~~~v~v-~~~ 159 (310)
|+|-|.|-|+..+..... ....++|+.....||+.+||.+..|..|+.+ |+.++++.|.+.|+| +.+
T Consensus 104 aqFaf~Is~p~~pti~~i-N~sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkdP 174 (1089)
T COG5077 104 AQFAFDISNPKYPTIEYI-NKSHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKDP 174 (1089)
T ss_pred hheeeecCCCCCCchhhh-hcccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeCC
Confidence 999999999888654332 3467899999999999999999998876654 899999999999999 654
No 37
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=99.13 E-value=3e-11 Score=106.85 Aligned_cols=263 Identities=26% Similarity=0.314 Sum_probs=173.7
Q ss_pred EEEccccccccccccceEEeccEEeCCeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCCCCCcEEEEEEEEEEEecCCC
Q 021574 25 VKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNVKDHISLYLAMADTNSLNFGLEVYAVFRLFLLDQNQD 104 (310)
Q Consensus 25 w~I~~fs~~~~~~~~~~~~S~~f~~~G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~~~~w~~~~~f~~~l~n~~~~ 104 (310)
|.|.+|+... ..++|..|..+|..|++.+||.|+ +++.|+.+.... +|.+.+.++|.+.|+...
T Consensus 8 ~~~~~~~~~~-----l~~ys~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~----~~~~~~~~~l~v~n~~~~ 71 (297)
T KOG1987|consen 8 WVISNFSSVG-----LVIYSNGFVKGGCKWRLSAYPKGN-------YLSLTLSVSDSP----GWERYAKLRLTVVNQKSE 71 (297)
T ss_pred eeeccCcchh-----hhccccceeecCceEEEEEecCCC-------EEEEEEEeccCC----CcceeEEEEEEEccCCCc
Confidence 8899999886 278999999999999999999974 789998887653 699999999999999998
Q ss_pred ce-eEE-ecceeeeecCCccccccceeeeccccccCCCCeEEcCeEEEEEEEEE-EeecCCcceEeE------eeEeccC
Q 021574 105 NY-LVV-QNAKERRFNGLKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVFV-KERNIGKGECLS------MEKFTYS 175 (310)
Q Consensus 105 ~~-~~~-~~~~~~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~v-~~~~~~~~~~~~------~~~~~~~ 175 (310)
++ ... .......|......||+..+++...+.+++.||+.++.+.+-+.+.| +..........+ ....+..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~ 151 (297)
T KOG1987|consen 72 KYLSTVEEGFSWFRFNKVLKEWGFGKMLPLTLLIDCSNGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEV 151 (297)
T ss_pred ceeeeeeeeEEeccccccccccCcccccChHHhhcccCcEEEcCceEEEeeecceeeecccccchhccccccccccchhh
Confidence 65 332 12222233333679999999999999988899999999988888878 655221111110 0122333
Q ss_pred ----cEEEEEEcceeccCC----ceeecceEEeCCceEEEEEEeCCCCCCCCCeEEEEEEeCCCC----CCCceEEEEEE
Q 021574 176 ----SKYVWKVENFSKLDT----RYEESQVFGAGNHKWKIVLYPRGNGCGDGDHLSLYLALGDST----VDGIKVYAEYT 243 (310)
Q Consensus 176 ----~~~~~~i~~fs~~~~----~~~~S~~f~~gg~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~----~~~w~~~~~~~ 243 (310)
..|+|.+.+++.... ....+..|..++..|++.++|.+....+..+++.+|...... ...-.+.....
T Consensus 152 ~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~~~lk~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 231 (297)
T KOG1987|consen 152 LEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKNRHLKLACMPVLLSLIETLNVSQSLQEASNYDLKEAKSALTYVIAA 231 (297)
T ss_pred HhhhceEEEeccchHHHHHhhcCChhhhhccccccHHHHHHHHHHHHHHHHhhhhcccHHHhchhHHHHHHHHHHHHHhc
Confidence 679999999998872 256667899999999999999998765556788888766532 11222233333
Q ss_pred EEEEcCCCCc--e-eeecccceeeccCcCCccccceecccccCCCCCCeeECCEEEEEEEEEEE
Q 021574 244 LRILDQLGAK--H-KSLQAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVL 304 (310)
Q Consensus 244 ~~l~n~~~~~--~-~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V~v~ 304 (310)
...+|+-..+ + ...+....+.......+ ..++.++.++.....+++..+++.+++...++
T Consensus 232 ~~~ld~l~~~~~~~~~k~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 294 (297)
T KOG1987|consen 232 GFKLDWLEKKLNEVKEKKKKDLWYEIRLQEL-EEELKSLKDKCSDLEGLLVKDKAEVEAESEPL 294 (297)
T ss_pred cchHhHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHhhhhhhhhHHHHHHhhhhhhhcccCCc
Confidence 3445554421 1 11010101111111111 34455555555444567777777777766544
No 38
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.41 E-value=3.2e-06 Score=74.76 Aligned_cols=121 Identities=31% Similarity=0.557 Sum_probs=96.4
Q ss_pred EEEEcceeccCCceeecceEEeCCceEEEEEEeCCCCCCCCCeEEEEEEeCCCCCCCceEEEEEEEEEEcCCCCce-eee
Q 021574 179 VWKVENFSKLDTRYEESQVFGAGNHKWKIVLYPRGNGCGDGDHLSLYLALGDSTVDGIKVYAEYTLRILDQLGAKH-KSL 257 (310)
Q Consensus 179 ~~~i~~fs~~~~~~~~S~~f~~gg~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~~~~w~~~~~~~~~l~n~~~~~~-~~~ 257 (310)
.|.+.+++... ..++|..|..++..|++.+||.|+ +++.|+.+.... .|.+.+.++|.+.|+...+. ...
T Consensus 7 ~~~~~~~~~~~-l~~ys~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~--~~~~~~~~~l~v~n~~~~~~~~~~ 77 (297)
T KOG1987|consen 7 TWVISNFSSVG-LVIYSNGFVKGGCKWRLSAYPKGN------YLSLTLSVSDSP--GWERYAKLRLTVVNQKSEKYLSTV 77 (297)
T ss_pred ceeeccCcchh-hhccccceeecCceEEEEEecCCC------EEEEEEEeccCC--CcceeEEEEEEEccCCCcceeeee
Confidence 37788887776 678898999999999999999985 788888877643 79999999999999988754 331
Q ss_pred cccceeeccC--cCCccccceecccccCCCCCCeeECCEEEEEEEEEEEcccC
Q 021574 258 QAAKDWFQSP--NLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLGTSE 308 (310)
Q Consensus 258 ~~~~~~F~~~--~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V~v~~~~~ 308 (310)
......|... ...||+..+++...+.+.+.||++++.+++-+.+.|.+..+
T Consensus 78 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~V~~~~~ 130 (297)
T KOG1987|consen 78 EEGFSWFRFNKVLKEWGFGKMLPLTLLIDCSNGFLVAHKLVLVARSEVFEAMG 130 (297)
T ss_pred eeeEEeccccccccccCcccccChHHhhcccCcEEEcCceEEEeeecceeeec
Confidence 1344444433 56899999999999999889999998888888877776543
No 39
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=5e-07 Score=92.40 Aligned_cols=130 Identities=23% Similarity=0.307 Sum_probs=106.3
Q ss_pred cEEEEEEcceeccCCceeecceEEeCCceEEEEEEeCCCCCCCCCeEEEEEEeCCCC-CCCceEEEEEEEEEEcCCCCce
Q 021574 176 SKYVWKVENFSKLDTRYEESQVFGAGNHKWKIVLYPRGNGCGDGDHLSLYLALGDST-VDGIKVYAEYTLRILDQLGAKH 254 (310)
Q Consensus 176 ~~~~~~i~~fs~~~~~~~~S~~f~~gg~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~-~~~w~~~~~~~~~l~n~~~~~~ 254 (310)
...+|...+...+.. ...++.|..|+.+|++.+.|+++. ...+++|+.|.... ...|++.+++.+.++|..++..
T Consensus 27 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~ 102 (1093)
T KOG1863|consen 27 QSTTIDGIDDKSLLY-RALSSNFGAGATKWKILIAPKVNS---LQSTRKKLEVMPSQSLKSWSCGAQAVLRVKNTIDNLP 102 (1093)
T ss_pred ccccccCcCcchhhh-HhcCccccccccceeeeeccccCc---ccceeEEeeeccCCCCcceEecchhhhccccCCCCch
Confidence 344455555555554 677888989999999999999883 35899999999876 4459999999999999444333
Q ss_pred eeecccceeeccCcCCccccceecccccCCCCCCeeECCEEEEEEEEEEEcccCC
Q 021574 255 KSLQAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLGTSEP 309 (310)
Q Consensus 255 ~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V~v~~~~~~ 309 (310)
...+...|.|.....+||+..|+.++++.+++.||+.+|++.++++|.+...++.
T Consensus 103 ~~~~~~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~ 157 (1093)
T KOG1863|consen 103 DPEKAIHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPTSL 157 (1093)
T ss_pred hhhhhhhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecCCcc
Confidence 3325678899988899999999999999999999999999999999999988775
No 40
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=7.2e-06 Score=84.07 Aligned_cols=128 Identities=20% Similarity=0.226 Sum_probs=102.9
Q ss_pred ceEEEEEccccccccccccceEEeccEEeCCeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCCCCCcEEEEEEEEEEEe
Q 021574 21 AHYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNVKDHISLYLAMADTNSLNFGLEVYAVFRLFLLD 100 (310)
Q Consensus 21 ~~~~w~I~~fs~~~~~~~~~~~~S~~f~~~G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~~~~w~~~~~f~~~l~n 100 (310)
...+|...+...... ...|+.|..++.+|++.+.|+++. ...+++|+.+...... ..|.+.+++.+.+.|
T Consensus 27 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~s~~~~~~~~v~~ 96 (1093)
T KOG1863|consen 27 QSTTIDGIDDKSLLY-----RALSSNFGAGATKWKILIAPKVNS----LQSTRKKLEVMPSQSL-KSWSCGAQAVLRVKN 96 (1093)
T ss_pred ccccccCcCcchhhh-----HhcCccccccccceeeeeccccCc----ccceeEEeeeccCCCC-cceEecchhhhcccc
Confidence 334455555544433 567888999999999999999863 5779999999988765 459999999999999
Q ss_pred cCCCceeEEecceeeeecCCccccccceeeeccccccCCCCeEEcCeEEEEEEEEE-Eee
Q 021574 101 QNQDNYLVVQNAKERRFNGLKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVFV-KER 159 (310)
Q Consensus 101 ~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~v-~~~ 159 (310)
..+.... ......|.|......||+..|+.++++.++..+|+.+|++.++++|.+ ...
T Consensus 97 ~~~~~~~-~~~~~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~ 155 (1093)
T KOG1863|consen 97 TIDNLPD-PEKAIHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPT 155 (1093)
T ss_pred CCCCchh-hhhhhhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecCC
Confidence 4333332 234568899998899999999999999999999999999999999999 544
No 41
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.66 E-value=2.7e-05 Score=71.11 Aligned_cols=85 Identities=24% Similarity=0.285 Sum_probs=72.9
Q ss_pred cccCCceEEEEEccccccccc---cccceEEeccEEe--CCeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCC-CCCcE
Q 021574 16 SHVSPAHYVVKIKSFSFLAEK---AVEVKYESAAFEA--GGYKWKLVLYPNGNESKNVKDHISLYLAMADTNSL-NFGLE 89 (310)
Q Consensus 16 ~~~~~~~~~w~I~~fs~~~~~---~~~~~~~S~~f~~--~G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~-~~~w~ 89 (310)
.....|+..|+|.+++..+.+ +....++|++|.. .||+.+..+|-+|++ .+.+.++|+|+.++.++.+ ...|+
T Consensus 275 ~~~~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~~~~lng~g-~~~~~~~s~~~~~~~ge~d~~l~wp 353 (391)
T KOG0297|consen 275 VRSYDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCARIYLNGDG-TGKGTHLSLYFVVMRGEYDALLPWP 353 (391)
T ss_pred hhccCCEEEEEecchhhhhHHHHhccCccccccccccccccHHHHhHhhhcCCC-CCCcceeeeeeeecccCcccccccC
Confidence 344589999999999666543 3344889999974 999999999999987 6778899999999999988 78899
Q ss_pred EEEEEEEEEEec
Q 021574 90 VYAVFRLFLLDQ 101 (310)
Q Consensus 90 ~~~~f~~~l~n~ 101 (310)
++-+.+|.|++|
T Consensus 354 f~~~v~~~l~dq 365 (391)
T KOG0297|consen 354 FRQKVTLMLLDQ 365 (391)
T ss_pred CCCceEEEEecc
Confidence 999999999999
No 42
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.08 E-value=0.00036 Score=63.81 Aligned_cols=76 Identities=29% Similarity=0.447 Sum_probs=67.3
Q ss_pred cCcEEEEEEcceeccC-------CceeecceEEe--CCceEEEEEEeCCCCCCCCCeEEEEEEeCCCC---CCCceEEEE
Q 021574 174 YSSKYVWKVENFSKLD-------TRYEESQVFGA--GNHKWKIVLYPRGNGCGDGDHLSLYLALGDST---VDGIKVYAE 241 (310)
Q Consensus 174 ~~~~~~~~i~~fs~~~-------~~~~~S~~f~~--gg~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~---~~~w~~~~~ 241 (310)
..+...|+|.+++..+ ...++|+.|+. .|++.+.++|-||++.+.+.++|+|+.++.++ ...|++.-.
T Consensus 278 ~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~~~~lng~g~~~~~~~s~~~~~~~ge~d~~l~wpf~~~ 357 (391)
T KOG0297|consen 278 YDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCARIYLNGDGTGKGTHLSLYFVVMRGEYDALLPWPFRQK 357 (391)
T ss_pred cCCEEEEEecchhhhhHHHHhccCccccccccccccccHHHHhHhhhcCCCCCCcceeeeeeeecccCcccccccCCCCc
Confidence 3689999999996554 35788998877 69999999999999988889999999999988 458999999
Q ss_pred EEEEEEcC
Q 021574 242 YTLRILDQ 249 (310)
Q Consensus 242 ~~~~l~n~ 249 (310)
+++.+++|
T Consensus 358 v~~~l~dq 365 (391)
T KOG0297|consen 358 VTLMLLDQ 365 (391)
T ss_pred eEEEEecc
Confidence 99999999
Done!