Query 021574
Match_columns 310
No_of_seqs 297 out of 1971
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 06:07:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021574.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021574hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ivv_A Speckle-type POZ protei 100.0 1E-30 3.6E-35 205.5 13.1 137 13-156 3-142 (145)
2 2foj_A Ubiquitin carboxyl-term 100.0 1.5E-30 5.2E-35 207.0 14.1 136 173-310 16-154 (155)
3 2foj_A Ubiquitin carboxyl-term 100.0 3.4E-29 1.2E-33 199.2 14.7 134 18-159 16-151 (155)
4 4gjh_A TNF receptor-associated 100.0 7E-30 2.4E-34 207.3 8.3 145 11-156 14-172 (178)
5 3ivv_A Speckle-type POZ protei 100.0 3.3E-29 1.1E-33 197.0 10.4 131 173-306 8-145 (145)
6 4ghu_A TNF receptor-associated 100.0 4.5E-29 1.5E-33 205.1 7.2 141 16-159 35-190 (198)
7 1lb6_A TNF receptor-associated 99.9 5.8E-28 2E-32 193.0 11.3 137 18-156 2-155 (160)
8 4gjh_A TNF receptor-associated 99.9 1.9E-28 6.4E-33 198.9 6.9 134 173-306 21-175 (178)
9 2gkw_A TNF receptor-associated 99.9 6.6E-28 2.2E-32 197.9 6.9 136 18-156 37-186 (192)
10 1ca9_A TRAF2, protein (TNF rec 99.9 1.8E-27 6.1E-32 195.6 8.5 137 18-156 40-189 (192)
11 3hqi_A Speckle-type POZ protei 99.9 3.9E-27 1.3E-31 208.5 10.7 179 17-206 3-187 (312)
12 1d00_A Tumor necrosis factor r 99.9 2.9E-27 9.9E-32 190.5 8.4 138 17-156 15-165 (168)
13 4ghu_A TNF receptor-associated 99.9 2E-27 6.9E-32 195.3 5.8 134 173-309 37-192 (198)
14 1flk_A TNF receptor associated 99.9 2.8E-27 9.6E-32 199.1 6.3 137 17-156 72-222 (228)
15 1ca9_A TRAF2, protein (TNF rec 99.9 3.6E-27 1.2E-31 193.8 6.0 131 173-305 40-191 (192)
16 1d00_A Tumor necrosis factor r 99.9 6.8E-27 2.3E-31 188.4 6.4 131 173-305 16-167 (168)
17 1lb6_A TNF receptor-associated 99.9 2.7E-26 9.3E-31 183.2 9.1 130 174-306 3-158 (160)
18 2gkw_A TNF receptor-associated 99.9 8.7E-27 3E-31 191.2 5.5 131 174-307 38-190 (192)
19 1flk_A TNF receptor associated 99.9 6.8E-26 2.3E-30 190.6 5.6 134 173-308 73-227 (228)
20 3hqi_A Speckle-type POZ protei 99.9 7.5E-25 2.6E-29 193.8 11.2 130 174-306 5-141 (312)
21 2f1z_A Ubiquitin carboxyl-term 99.9 3.7E-24 1.3E-28 202.0 11.1 136 173-309 28-165 (522)
22 2f1z_A Ubiquitin carboxyl-term 99.9 6.2E-24 2.1E-28 200.5 10.9 137 16-159 26-163 (522)
23 4gwm_A Meprin A subunit beta; 99.6 1.2E-14 4.1E-19 136.4 10.8 131 15-156 400-565 (592)
24 4gwm_A Meprin A subunit beta; 99.5 1.2E-12 4.1E-17 122.9 19.2 124 173-304 403-566 (592)
25 3v0r_A Major allergen ALT A 1; 41.0 6.9 0.00024 28.6 0.5 29 172-200 8-38 (133)
26 3v0r_A Major allergen ALT A 1; 39.6 9 0.00031 28.0 0.9 32 16-49 7-38 (133)
No 1
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Probab=99.97 E-value=1e-30 Score=205.55 Aligned_cols=137 Identities=29% Similarity=0.506 Sum_probs=117.7
Q ss_pred ccccccCCceEEEEEccccccccccccceEEeccEEeCCe---EEEEEEeeCCCcCCCCCCeEEEEEEEecCCCCCCCcE
Q 021574 13 RSTSHVSPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGGY---KWKLVLYPNGNESKNVKDHISLYLAMADTNSLNFGLE 89 (310)
Q Consensus 13 ~~~~~~~~~~~~w~I~~fs~~~~~~~~~~~~S~~f~~~G~---~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~~~~w~ 89 (310)
+.|.++..++|+|+|+|||.+++. .+..++|++|.+||| +|+|.+||+|+. .+..+|||+||.|.+.. .|+
T Consensus 3 ~~m~~~~~~~~~w~I~~fs~~~~~-~g~~~~S~~F~~gg~~g~~W~i~~yP~G~~-~~~~~~lSlyL~l~~~~----~w~ 76 (145)
T 3ivv_A 3 GGSGKVVKFSYMWTINNFSFCREE-MGEVIKSSTFSSGANDKLKWCLRVNPKGLD-EESKDYLSLYLLLVSCP----KSE 76 (145)
T ss_dssp --CCCCCEEEEEEEESSGGGCCCC-TTCCEECCCEEESGGGCEEEEEEEETTCSS-GGGTTEEEEEEEEEECS----SSE
T ss_pred CCCCcEEEEEEEEEEcCchHHhhc-CCCEEECCCcCCCCcCCceEEEEEEcCCCC-CCCCCeEEEEEEEcCCC----CCc
Confidence 578889999999999999999752 333899999999995 999999999987 45679999999998763 599
Q ss_pred EEEEEEEEEEecCCCceeEEecceeeeecCCccccccceeeeccccccCCCCeEEcCeEEEEEEEEE
Q 021574 90 VYAVFRLFLLDQNQDNYLVVQNAKERRFNGLKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVFV 156 (310)
Q Consensus 90 ~~~~f~~~l~n~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~v 156 (310)
++|+|+|+|+||.++..........+.|.. ..+|||.+||++++|++++++||.||+|+|+|+|+|
T Consensus 77 v~a~f~l~llnq~~~~~~~~~~~~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V 142 (145)
T 3ivv_A 77 VRAKFKFSILNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSV 142 (145)
T ss_dssp EEEEEEEEEECTTSCEEEEEECSSCEEEET-TCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEE
T ss_pred EEEEEEEEEEecCCCceeeecccceEEecC-CCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEE
Confidence 999999999999998765443445778874 589999999999999877899999999999999998
No 2
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Probab=99.97 E-value=1.5e-30 Score=206.98 Aligned_cols=136 Identities=21% Similarity=0.336 Sum_probs=116.1
Q ss_pred ccCcEEEEEEcceeccCCceeecceEEeCCceEEEEEEeCCCCC-CCCCeEEEEEEeCCCC-CCCceEEEEEEEEEEcCC
Q 021574 173 TYSSKYVWKVENFSKLDTRYEESQVFGAGNHKWKIVLYPRGNGC-GDGDHLSLYLALGDST-VDGIKVYAEYTLRILDQL 250 (310)
Q Consensus 173 ~~~~~~~~~i~~fs~~~~~~~~S~~f~~gg~~w~i~~yp~g~~~-~~~~~ls~yL~~~~~~-~~~w~~~~~~~~~l~n~~ 250 (310)
...+.|+|+|+||+.++ +.++|++|.+||++|+|++||+|+.. +.+++||+||+|.... ...|++.|+|+|.|+||+
T Consensus 16 ~~~~~~~w~I~nfS~~~-~~~~S~~f~~gg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~~~~~~w~v~a~~~l~l~~~~ 94 (155)
T 2foj_A 16 RSEATFQFTVERFSRLS-ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAESDSTSWSCHAQAVLKIINYR 94 (155)
T ss_dssp CSEEEEEEEESSGGGCC-SCEECCCEEETTEEEEEEEEEEC------CBEEEEEEEESTTCCCSSCEEEEEEEEEECCSS
T ss_pred CCCcEEEEEECChhhcC-CceEcCCEEECCccEEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCEEEEEEEEEEEcCC
Confidence 35688999999999996 78999999999999999999999765 3568999999997544 457999999999999998
Q ss_pred CCc-eeeecccceeeccCcCCccccceecccccCCCCCCeeECCEEEEEEEEEEEcccCCC
Q 021574 251 GAK-HKSLQAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLGTSEPL 310 (310)
Q Consensus 251 ~~~-~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V~v~~~~~~~ 310 (310)
++. +.. +...++|.....+|||++||+|++|+++++|||+||+|+|+|+|+|.+++|-|
T Consensus 95 ~~~~~~~-~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~tG~~ 154 (155)
T 2foj_A 95 DDEKSFS-RRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGVA 154 (155)
T ss_dssp CGGGCEE-EEEEEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECCCBSSC
T ss_pred CCcceEE-eccEEEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEeCccccc
Confidence 875 333 45678898767889999999999999888999999999999999999999965
No 3
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Probab=99.96 E-value=3.4e-29 Score=199.19 Aligned_cols=134 Identities=18% Similarity=0.291 Sum_probs=112.2
Q ss_pred cCCceEEEEEccccccccccccceEEeccEEeCCeEEEEEEeeCCCcCC-CCCCeEEEEEEEecCCCCCCCcEEEEEEEE
Q 021574 18 VSPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESK-NVKDHISLYLAMADTNSLNFGLEVYAVFRL 96 (310)
Q Consensus 18 ~~~~~~~w~I~~fs~~~~~~~~~~~~S~~f~~~G~~W~l~~~p~g~~~~-~~~~~ls~~L~~~~~~~~~~~w~~~~~f~~ 96 (310)
...++|+|+|+|||.++ + .++|++|.++|++|+|.+||+|+. . +..+|||+||.|... .++..|++.|+|+|
T Consensus 16 ~~~~~~~w~I~nfS~~~----~-~~~S~~f~~gg~~W~i~~yP~G~~-~~~~~~~lSlyL~~~~~-~~~~~w~v~a~~~l 88 (155)
T 2foj_A 16 RSEATFQFTVERFSRLS----E-SVLSPPCFVRNLPWKIMVMPRFYP-DRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVL 88 (155)
T ss_dssp CSEEEEEEEESSGGGCC----S-CEECCCEEETTEEEEEEEEEEC-------CBEEEEEEEESTT-CCCSSCEEEEEEEE
T ss_pred CCCcEEEEEECChhhcC----C-ceEcCCEEECCccEEEEEEECCCC-CCCCCCEEEEEEEeCCC-CCCCCCEEEEEEEE
Confidence 45799999999999994 2 899999999999999999999976 3 357899999999654 34677999999999
Q ss_pred EEEecCCCceeEEecceeeeecCCccccccceeeeccccccCCCCeEEcCeEEEEEEEEE-Eee
Q 021574 97 FLLDQNQDNYLVVQNAKERRFNGLKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVFV-KER 159 (310)
Q Consensus 97 ~l~n~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~v-~~~ 159 (310)
+|+||+++..... ....+.|.....+|||.+||++++|++++++||.||+|+|+|+|+| ++.
T Consensus 89 ~l~~~~~~~~~~~-~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~t 151 (155)
T 2foj_A 89 KIINYRDDEKSFS-RRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPH 151 (155)
T ss_dssp EECCSSCGGGCEE-EEEEEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECCCB
T ss_pred EEEcCCCCcceEE-eccEEEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEeCcc
Confidence 9999998753332 2356788876789999999999999988899999999999999999 554
No 4
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}
Probab=99.96 E-value=7e-30 Score=207.33 Aligned_cols=145 Identities=20% Similarity=0.331 Sum_probs=118.8
Q ss_pred ccccccccCCceEEEEEcccccccc---ccccceEEeccEEeC--CeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCC-
Q 021574 11 IARSTSHVSPAHYVVKIKSFSFLAE---KAVEVKYESAAFEAG--GYKWKLVLYPNGNESKNVKDHISLYLAMADTNSL- 84 (310)
Q Consensus 11 ~~~~~~~~~~~~~~w~I~~fs~~~~---~~~~~~~~S~~f~~~--G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~- 84 (310)
+......+..|+|+|+|+|||.+++ .+.+..++|++|.+| ||+|+|.+||+|+. .+..+|||+||.|++++.+
T Consensus 14 ~~~~~~~~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W~i~~yP~G~~-~~~~~~lSlyL~l~~~~~d~ 92 (178)
T 4gjh_A 14 FKQLEGACYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDG-SGKGTHLSLYFVVMRGEFDS 92 (178)
T ss_dssp HHHHHHCCSSSEEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEBCCTTGG
T ss_pred HHHhcCcccceEEEEEECCHHHHHhhhhcCCCcEEECCCeEeCCCCeEEEEEEEECCCC-CCCCCEEEEEEEEecCCCCc
Confidence 3334456789999999999999976 333337999999999 99999999999987 4567999999999887653
Q ss_pred CCCcEEEEEEEEEEEecCCCceeEEe----cceeeeecC----CccccccceeeeccccccCCCCeEEcCeEEEEEEEEE
Q 021574 85 NFGLEVYAVFRLFLLDQNQDNYLVVQ----NAKERRFNG----LKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVFV 156 (310)
Q Consensus 85 ~~~w~~~~~f~~~l~n~~~~~~~~~~----~~~~~~F~~----~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~v 156 (310)
...|++.|+|+|+|+||.++...... +...+.|.. .+.+|||.+||++++|++++++||+||+|+|+|+|.|
T Consensus 93 ~l~W~v~a~~~l~Lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i 172 (178)
T 4gjh_A 93 LLQWPFRQRVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDL 172 (178)
T ss_dssp GSCSSCCCEEEEEECCTTSSCCCEEEEEECCTTCGGGSCCSSSBCCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEECC
T ss_pred ccCCceEEEEEEEEEcCCCCcceeEEeeccCCccccccCCcccccCCcChhheeEHHHhhccccCcCcCCEEEEEEEEEe
Confidence 46799999999999999987543321 113456763 3568999999999999977799999999999999987
No 5
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Probab=99.96 E-value=3.3e-29 Score=196.95 Aligned_cols=131 Identities=28% Similarity=0.475 Sum_probs=113.0
Q ss_pred ccCcEEEEEEcceeccC---CceeecceEEeCCc---eEEEEEEeCCCCCCCCCeEEEEEEeCCCCCCCceEEEEEEEEE
Q 021574 173 TYSSKYVWKVENFSKLD---TRYEESQVFGAGNH---KWKIVLYPRGNGCGDGDHLSLYLALGDSTVDGIKVYAEYTLRI 246 (310)
Q Consensus 173 ~~~~~~~~~i~~fs~~~---~~~~~S~~f~~gg~---~w~i~~yp~g~~~~~~~~ls~yL~~~~~~~~~w~~~~~~~~~l 246 (310)
...+.|+|+|.||+.++ ++.+.|++|.+||+ +|+|++||+|+..++++|||+||+|... +.|++.|+|+|.|
T Consensus 8 ~~~~~~~w~I~~fs~~~~~~g~~~~S~~F~~gg~~g~~W~i~~yP~G~~~~~~~~lSlyL~l~~~--~~w~v~a~f~l~l 85 (145)
T 3ivv_A 8 VVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC--PKSEVRAKFKFSI 85 (145)
T ss_dssp CCEEEEEEEESSGGGCCCCTTCCEECCCEEESGGGCEEEEEEEETTCSSGGGTTEEEEEEEEEEC--SSSEEEEEEEEEE
T ss_pred EEEEEEEEEEcCchHHhhcCCCEEECCCcCCCCcCCceEEEEEEcCCCCCCCCCeEEEEEEEcCC--CCCcEEEEEEEEE
Confidence 45688999999999987 47899999999996 9999999999877667899999999875 3799999999999
Q ss_pred EcCCCCceeee-cccceeeccCcCCccccceecccccCCCCCCeeECCEEEEEEEEEEEcc
Q 021574 247 LDQLGAKHKSL-QAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLGT 306 (310)
Q Consensus 247 ~n~~~~~~~~~-~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V~v~~~ 306 (310)
+||+++..... ....++|. ...+|||++||++++|+++++|||+||+|+|+|+|+|+++
T Consensus 86 lnq~~~~~~~~~~~~~~~F~-~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V~~d 145 (145)
T 3ivv_A 86 LNAKGEETKAMESQRAYRFV-QGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD 145 (145)
T ss_dssp ECTTSCEEEEEECSSCEEEE-TTCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEECC-
T ss_pred EecCCCceeeecccceEEec-CCCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEEEeC
Confidence 99998764431 33567886 4678999999999999876689999999999999999863
No 6
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.95 E-value=4.5e-29 Score=205.14 Aligned_cols=141 Identities=17% Similarity=0.256 Sum_probs=115.0
Q ss_pred cccCCceEEEEEcccccccc---ccccceEEeccEEeC--CeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCC-CCCcE
Q 021574 16 SHVSPAHYVVKIKSFSFLAE---KAVEVKYESAAFEAG--GYKWKLVLYPNGNESKNVKDHISLYLAMADTNSL-NFGLE 89 (310)
Q Consensus 16 ~~~~~~~~~w~I~~fs~~~~---~~~~~~~~S~~f~~~--G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~-~~~w~ 89 (310)
..+..|+|+|+|+|||.+++ .+.+..++|++|.+| ||+|+|.+||+|+. .+..+|||+||.+++++.+ ...|+
T Consensus 35 ~~~~~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W~i~~yPnG~~-~~~~~~lSlyL~l~~g~~D~~l~wp 113 (198)
T 4ghu_A 35 TASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDG-MGKGTHLSLFFVIMRGEYDALLPWP 113 (198)
T ss_dssp TCCSSSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTGGGSCSS
T ss_pred ccccccEEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcEEEEEEEeCCCC-CCCCCeEEEEEEecCCccCCCCCce
Confidence 35678999999999999976 344458999999999 99999999999987 4567899999999988765 56899
Q ss_pred EEEEEEEEEEecCCCceeEEe----cce----eeeecCCccccccceeeeccccccCCCCeEEcCeEEEEEEEEE-Eee
Q 021574 90 VYAVFRLFLLDQNQDNYLVVQ----NAK----ERRFNGLKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVFV-KER 159 (310)
Q Consensus 90 ~~~~f~~~l~n~~~~~~~~~~----~~~----~~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~v-~~~ 159 (310)
+.|+|+|+|+||.++...... +.. .+.|...+.+|||.+||++++|+ +++||+||+|+|+|+|.| ..+
T Consensus 114 ~~a~~~l~Lldq~~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~--~~gyL~dD~l~I~~~V~v~~~~ 190 (198)
T 4ghu_A 114 FKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDTSDLP 190 (198)
T ss_dssp CCCCEEEEECCCSTTCCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEEHHHHH--HTTSCBTTBEEEEEEECCTTCC
T ss_pred EEEEEEEEEEcCCCCccceEEEeecCcccceecCCcccCcCCcCchhEeEHHHhh--hcCCeeCCEEEEEEEEEeccCC
Confidence 999999999999976543321 111 12233446789999999999999 589999999999999998 444
No 7
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A
Probab=99.95 E-value=5.8e-28 Score=192.96 Aligned_cols=137 Identities=20% Similarity=0.277 Sum_probs=108.8
Q ss_pred cCCceEEEEEcccccccc-ccccc--eEEeccEEeC--CeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCC-CCCcEEE
Q 021574 18 VSPAHYVVKIKSFSFLAE-KAVEV--KYESAAFEAG--GYKWKLVLYPNGNESKNVKDHISLYLAMADTNSL-NFGLEVY 91 (310)
Q Consensus 18 ~~~~~~~w~I~~fs~~~~-~~~~~--~~~S~~f~~~--G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~-~~~w~~~ 91 (310)
...++|+|+|+|||.+++ .+.+. .++|++|.+| ||+|+|.+||+|++.+...+|||+||.+++++.+ ...|+++
T Consensus 2 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yP~G~~~~~~~~~lSlyL~l~~~~~d~~l~wp~~ 81 (160)
T 1lb6_A 2 QCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQ 81 (160)
T ss_dssp CCCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred ccCcEEEEEECCHHHHHHhhhcCCCeEEECcCeecCCCCeeEEEEEEecCCCCCCCCCEEEEEEEEeecCCCccCCCcee
Confidence 457999999999999975 34444 7999999999 9999999999997622247899999999987765 5679999
Q ss_pred EEEEEEEEecCCCce--eEE----ecceeeeecC-----CccccccceeeeccccccCCCCeEEcCeEEEEEEEEE
Q 021574 92 AVFRLFLLDQNQDNY--LVV----QNAKERRFNG-----LKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVFV 156 (310)
Q Consensus 92 ~~f~~~l~n~~~~~~--~~~----~~~~~~~F~~-----~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~v 156 (310)
|+|+|+|+||.+... ... .+.....|.. ...+|||.+||++++|+ +++||+||+|+|+|+|.|
T Consensus 82 a~~~l~lldq~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~G~~~Fi~~~~L~--~~~yl~dD~l~I~~~V~v 155 (160)
T 1lb6_A 82 GTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALR--QRTFIKDDTLLVRCEVST 155 (160)
T ss_dssp SEEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGG--TSCCCBTTBEEEEEEEEC
T ss_pred eeEEEEEEcCCCccccccceEEeecCCcchhccCCcccCCCCCcCEeeEeEHHHhh--hCCCccCCEEEEEEEEEE
Confidence 999999999987621 110 0111223432 12479999999999999 689999999999999998
No 8
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}
Probab=99.95 E-value=1.9e-28 Score=198.90 Aligned_cols=134 Identities=27% Similarity=0.415 Sum_probs=112.0
Q ss_pred ccCcEEEEEEcceeccCC-------ceeecceEEeC--CceEEEEEEeCCCCCCCCCeEEEEEEeCCCC---CCCceEEE
Q 021574 173 TYSSKYVWKVENFSKLDT-------RYEESQVFGAG--NHKWKIVLYPRGNGCGDGDHLSLYLALGDST---VDGIKVYA 240 (310)
Q Consensus 173 ~~~~~~~~~i~~fs~~~~-------~~~~S~~f~~g--g~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~---~~~w~~~~ 240 (310)
+..+.|+|+|.||+.+++ ..+.|++|++| |++|+|++||+|++.+.++|||+||+|.+++ ...|++.|
T Consensus 21 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~d~~l~W~v~a 100 (178)
T 4gjh_A 21 CYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQ 100 (178)
T ss_dssp CSSSEEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEBCCTTGGGSCSSCCC
T ss_pred ccceEEEEEECCHHHHHhhhhcCCCcEEECCCeEeCCCCeEEEEEEEECCCCCCCCCEEEEEEEEecCCCCcccCCceEE
Confidence 567999999999999863 27999999999 9999999999998876678999999998765 24799999
Q ss_pred EEEEEEEcCCCCceeeecc-----cceeecc----CcCCccccceecccccCCCCCCeeECCEEEEEEEEEEEcc
Q 021574 241 EYTLRILDQLGAKHKSLQA-----AKDWFQS----PNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLGT 306 (310)
Q Consensus 241 ~~~~~l~n~~~~~~~~~~~-----~~~~F~~----~~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V~v~~~ 306 (310)
+|+|.|+||.++....... ..+.|.. .+.+|||++||++++|+++.+|||+||+|+|+|+|.|.+.
T Consensus 101 ~~~l~Lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i~~~ 175 (178)
T 4gjh_A 101 RVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDLTDL 175 (178)
T ss_dssp EEEEEECCTTSSCCCEEEEEECCTTCGGGSCCSSSBCCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEECCTTC
T ss_pred EEEEEEEcCCCCcceeEEeeccCCccccccCCcccccCCcChhheeEHHHhhccccCcCcCCEEEEEEEEEecCC
Confidence 9999999998764221111 3456763 3468999999999999988889999999999999987654
No 9
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.94 E-value=6.6e-28 Score=197.87 Aligned_cols=136 Identities=18% Similarity=0.285 Sum_probs=112.0
Q ss_pred cCCceEEEEEcccccccc-ccccc--eEEeccEEeC--CeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCC-CCCcEEE
Q 021574 18 VSPAHYVVKIKSFSFLAE-KAVEV--KYESAAFEAG--GYKWKLVLYPNGNESKNVKDHISLYLAMADTNSL-NFGLEVY 91 (310)
Q Consensus 18 ~~~~~~~w~I~~fs~~~~-~~~~~--~~~S~~f~~~--G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~-~~~w~~~ 91 (310)
...++|+|+|+|||.+++ .+.+. .++|++|.+| ||+|+|.+||+|++ .+..+|||+||.+++++.+ ...|++.
T Consensus 37 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gykw~i~~yPnG~~-~~~~~~lSlyL~l~~~~~d~~l~wp~~ 115 (192)
T 2gkw_A 37 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDG-MGKGTHLSLFFVIMRGEYDALLPWPFK 115 (192)
T ss_dssp CCSSEEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred ccCcEEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcEEEEEEEeCCCC-CCCCCEEEEEEEEecCCCCccCCCcEE
Confidence 478999999999999974 33343 4999999999 99999999999986 4567999999999988765 5689999
Q ss_pred EEEEEEEEecCCCceeEEe----cceeeeecC----CccccccceeeeccccccCCCCeEEcCeEEEEEEEEE
Q 021574 92 AVFRLFLLDQNQDNYLVVQ----NAKERRFNG----LKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVFV 156 (310)
Q Consensus 92 ~~f~~~l~n~~~~~~~~~~----~~~~~~F~~----~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~v 156 (310)
|+|+|+|+||.+....... +...+.|.. .+.+|||.+||++++|+ +++||+||+|+|+|+|.|
T Consensus 116 a~~~l~lldq~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~wG~~~Fi~~~~L~--~~gyl~dD~l~I~~~V~v 186 (192)
T 2gkw_A 116 QKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDT 186 (192)
T ss_dssp CCEEEEECCCSTTCCCEEEEECCCTTCTTSSCCSSSBCCCEEEEEEEEHHHHH--HTTSCBTTEEEEEEEECC
T ss_pred EEEEEEEECCCCCccceEEEEecCCCcccccCCCCCCcCCCChHHEeEHHHhC--cCCCeeCCEEEEEEEEEc
Confidence 9999999999987543321 112245754 24689999999999999 469999999999999987
No 10
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=99.94 E-value=1.8e-27 Score=195.64 Aligned_cols=137 Identities=22% Similarity=0.315 Sum_probs=111.6
Q ss_pred cCCceEEEEEccccccccc-cccc--eEEeccEEe--CCeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCCC-CCcEEE
Q 021574 18 VSPAHYVVKIKSFSFLAEK-AVEV--KYESAAFEA--GGYKWKLVLYPNGNESKNVKDHISLYLAMADTNSLN-FGLEVY 91 (310)
Q Consensus 18 ~~~~~~~w~I~~fs~~~~~-~~~~--~~~S~~f~~--~G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~~-~~w~~~ 91 (310)
...++|+|+|+|||.+++. +.+. .++|++|.+ |||+|+|.+||+|++ .+..+|||+||.+.++..++ ..|++.
T Consensus 40 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W~i~~yP~G~~-~~~~~~lSlyL~l~~~~~~~~~~W~~~ 118 (192)
T 1ca9_A 40 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDG-TGRGTHLSLFFVVMKGPNDALLRWPFN 118 (192)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred ccCceEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeEEEEEEEeCCCC-CCCCCEEEEEEEEccCCCCCcCCCceE
Confidence 5789999999999999753 3332 599999999 999999999999986 45678999999999886654 789999
Q ss_pred EEEEEEEEecCCCceeEEe---cceeeeec----CCccccccceeeeccccccCCCCeEEcCeEEEEEEEEE
Q 021574 92 AVFRLFLLDQNQDNYLVVQ---NAKERRFN----GLKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVFV 156 (310)
Q Consensus 92 ~~f~~~l~n~~~~~~~~~~---~~~~~~F~----~~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~v 156 (310)
|+|+|+|+||.++...... +.....|. ..+.+|||.+||++++|++ +++||+||+|+|+|+|.|
T Consensus 119 a~~~l~lldq~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~-~~gyl~dD~l~I~~~V~V 189 (192)
T 1ca9_A 119 QKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVDL 189 (192)
T ss_dssp CCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETHHHHS-SCSSCBTTEEEEEEEECC
T ss_pred EEEEEEEECCCCCceeeEeeccCCchhhhcCCccCCCCCcChhheeEHHHhhh-ccCCEeCCEEEEEEEEEe
Confidence 9999999999988543210 11123454 2346899999999999986 579999999999999987
No 11
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.94 E-value=3.9e-27 Score=208.51 Aligned_cols=179 Identities=25% Similarity=0.407 Sum_probs=130.3
Q ss_pred ccCCceEEEEEccccccccccccceEEeccEEeCCe---EEEEEEeeCCCcCCCCCCeEEEEEEEecCCCCCCCcEEEEE
Q 021574 17 HVSPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGGY---KWKLVLYPNGNESKNVKDHISLYLAMADTNSLNFGLEVYAV 93 (310)
Q Consensus 17 ~~~~~~~~w~I~~fs~~~~~~~~~~~~S~~f~~~G~---~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~~~~w~~~~~ 93 (310)
++..++|+|+|.|||.++. +.++.++|++|.+||+ +|+|.+||+|+. +++.+|+|+||.|.++. .|++.|+
T Consensus 3 ~~~~~~~~w~I~nfs~~~~-~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~-~~~~~~lslyL~~~~~~----~~~v~a~ 76 (312)
T 3hqi_A 3 KVVKFSYMWTINNFSFCRE-EMGEVIKSSTFSSGANDKLKWCLRVNPKGLD-EESKDYLSLYLLLVSCP----KSEVRAK 76 (312)
T ss_dssp EEEEEEEEEEETTGGGCCC-CTTCCEECCCBCC--CCCCEEEEEEETTCCC---CTTEEEEEEEEEECC----C-CEEEE
T ss_pred ceEEEEEEEEEcCcchhhh-cCCCeEeeCCcccCCCCCceEEEEEECCCCC-ccCCCcEEEEEEEcCCC----CCcEEEE
Confidence 4567899999999999963 3344999999999995 999999999987 56779999999998764 5899999
Q ss_pred EEEEEEecCCCceeEEecceeeeecCCccccccceeeeccccccCCCCeEEcCeEEEEEEEEE-Eeec-CCcceEeEeeE
Q 021574 94 FRLFLLDQNQDNYLVVQNAKERRFNGLKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVFV-KERN-IGKGECLSMEK 171 (310)
Q Consensus 94 f~~~l~n~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~v-~~~~-~~~~~~~~~~~ 171 (310)
|+|+|+|++++..........+.|.. +.+|||.+||++++|++++++||.||+|+|+|+|.| +... ....+....+.
T Consensus 77 ~~~~l~~~~~~~~~~~~~~~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~~~~~~~~~~~~~~~~ 155 (312)
T 3hqi_A 77 FKFSILNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVK 155 (312)
T ss_dssp EEEEEECTTSCEEEEEECSSCEEECT-TCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEEECCCEECCCCCSSCC
T ss_pred EEEEEEeCCCCcccccccCCceeCCC-CCCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEeccccccccccccccC
Confidence 99999999998765544456788886 468999999999999877889999999999999999 5431 11111112233
Q ss_pred eccCcEEEEEEcceeccC-CceeecceEEeCCceEE
Q 021574 172 FTYSSKYVWKVENFSKLD-TRYEESQVFGAGNHKWK 206 (310)
Q Consensus 172 ~~~~~~~~~~i~~fs~~~-~~~~~S~~f~~gg~~w~ 206 (310)
.|++.. ..++..+. .....+.++.++|..+.
T Consensus 156 ~p~~~l----~~~l~~l~~~~~~~Dv~l~v~~~~f~ 187 (312)
T 3hqi_A 156 VPECRL----ADELGGLWENSRFTDCCLCVAGQEFQ 187 (312)
T ss_dssp CCCCCH----HHHHHHHHHTTCSCCEEEEETTEEEE
T ss_pred CCCchH----HHHHHHHHhCCCCCceEEEECCEEEe
Confidence 333322 14455544 23344557788876543
No 12
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A
Probab=99.94 E-value=2.9e-27 Score=190.52 Aligned_cols=138 Identities=22% Similarity=0.306 Sum_probs=110.6
Q ss_pred ccCCceEEEEEccccccccc-cccc--eEEeccEE--eCCeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCCC-CCcEE
Q 021574 17 HVSPAHYVVKIKSFSFLAEK-AVEV--KYESAAFE--AGGYKWKLVLYPNGNESKNVKDHISLYLAMADTNSLN-FGLEV 90 (310)
Q Consensus 17 ~~~~~~~~w~I~~fs~~~~~-~~~~--~~~S~~f~--~~G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~~-~~w~~ 90 (310)
....++|+|+|+|||.+++. +.+. .++|++|. +|||+|+|.+||+|+. .+..+|||+||.++++..++ ..|++
T Consensus 15 ~~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~~~~gG~~W~i~~yP~G~~-~~~~~~lSlyL~l~~~~~~~~~~w~~ 93 (168)
T 1d00_A 15 STYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDG-TGRGTHLSLFFVVMKGPNDALLRWPF 93 (168)
T ss_dssp CCSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTGGGSCSSC
T ss_pred cccCCEEEEEECCHHHHHHHhhcCCCeEEECCCeecCCCCEEEEEEEEeCCCC-CCCCcEEEEEEEEecCCCCccCCCce
Confidence 45789999999999999763 2332 39999996 7899999999999986 45679999999999876653 78999
Q ss_pred EEEEEEEEEecCCCceeEEe---cceeeeecC----CccccccceeeeccccccCCCCeEEcCeEEEEEEEEE
Q 021574 91 YAVFRLFLLDQNQDNYLVVQ---NAKERRFNG----LKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVFV 156 (310)
Q Consensus 91 ~~~f~~~l~n~~~~~~~~~~---~~~~~~F~~----~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~v 156 (310)
.|+|+|+|+||.+....... +.....|.. .+.+|||.+||++++|+++ ++||+||+|+|+|+|.|
T Consensus 94 ~~~~~l~ll~q~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~G~~~Fi~~~~L~~~-~gyl~dD~l~I~~~V~v 165 (168)
T 1d00_A 94 NQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAK-NSYVRDDAIFIKAIVDL 165 (168)
T ss_dssp CCCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETTTTTSS-SSSSBTTEEEEEEEECC
T ss_pred EEEEEEEEECCCCCccceeccccCcchhhccCCCcCCCCCcCcceEeEHHHhccc-CCceeCCEEEEEEEEEe
Confidence 99999999999987533211 001235653 3578999999999999953 39999999999999987
No 13
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.94 E-value=2e-27 Score=195.32 Aligned_cols=134 Identities=23% Similarity=0.375 Sum_probs=110.2
Q ss_pred ccCcEEEEEEcceeccCC-------ceeecceEEeC--CceEEEEEEeCCCCCCCCCeEEEEEEeCCCC---CCCceEEE
Q 021574 173 TYSSKYVWKVENFSKLDT-------RYEESQVFGAG--NHKWKIVLYPRGNGCGDGDHLSLYLALGDST---VDGIKVYA 240 (310)
Q Consensus 173 ~~~~~~~~~i~~fs~~~~-------~~~~S~~f~~g--g~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~---~~~w~~~~ 240 (310)
+..+.|+|+|.||+.+++ +.+.|++|++| |++|+|++||+|++.+.++|||+||.+.+++ ...|++.|
T Consensus 37 ~~~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W~i~~yPnG~~~~~~~~lSlyL~l~~g~~D~~l~wp~~a 116 (198)
T 4ghu_A 37 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ 116 (198)
T ss_dssp CSSSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred ccccEEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcEEEEEEEeCCCCCCCCCeEEEEEEecCCccCCCCCceEEE
Confidence 567999999999999863 57999999999 9999999999998876678999999998776 34899999
Q ss_pred EEEEEEEcCCCCc-eeeecc---------cceeeccCcCCccccceecccccCCCCCCeeECCEEEEEEEEEEEcccCC
Q 021574 241 EYTLRILDQLGAK-HKSLQA---------AKDWFQSPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLGTSEP 309 (310)
Q Consensus 241 ~~~~~l~n~~~~~-~~~~~~---------~~~~F~~~~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V~v~~~~~~ 309 (310)
+|+|.|+||.+.. +.. .. ..+.|...+.+|||++||++++|++ +|||+||+|+|+|+|+|+...+|
T Consensus 117 ~~~l~Lldq~~~~~~~~-~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~v~~~~~~ 192 (198)
T 4ghu_A 117 KVTLMLMDQGSSRRHLG-DAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDLPDP 192 (198)
T ss_dssp CEEEEECCCSTTCCCEE-EEECCCTTSGGGSCCSSSBCCCEEEEEEEEHHHHHH--TTSCBTTBEEEEEEECCTTCC--
T ss_pred EEEEEEEcCCCCccceE-EEeecCcccceecCCcccCcCCcCchhEeEHHHhhh--cCCeeCCEEEEEEEEEeccCCCC
Confidence 9999999998653 222 11 1112333456899999999999996 79999999999999999877655
No 14
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=99.94 E-value=2.8e-27 Score=199.10 Aligned_cols=137 Identities=18% Similarity=0.294 Sum_probs=112.6
Q ss_pred ccCCceEEEEEccccccccc-ccc--ceEEeccEEeC--CeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCC-CCCcEE
Q 021574 17 HVSPAHYVVKIKSFSFLAEK-AVE--VKYESAAFEAG--GYKWKLVLYPNGNESKNVKDHISLYLAMADTNSL-NFGLEV 90 (310)
Q Consensus 17 ~~~~~~~~w~I~~fs~~~~~-~~~--~~~~S~~f~~~--G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~-~~~w~~ 90 (310)
....++|+|+|+|||.+++. +.+ ..++|++|.+| ||+|+|.+||+|++ .+..+|||+||.+++++.+ ...|++
T Consensus 72 ~~~~g~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~-~~~~~~lSlyL~l~~~~~d~~l~Wp~ 150 (228)
T 1flk_A 72 ASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDG-MGKGTHLSLFFVIMRGEYDALLPWPF 150 (228)
T ss_dssp CCSSSEEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCEECEEEETTCCG-GGTTTEEEEEECCBCCTTTTSSCSSC
T ss_pred cCcCcEEEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcEEEEEEEcCCCC-CCCCCEEEEEEEEecCCccccCCCcE
Confidence 35789999999999999752 222 27999999999 99999999999987 4677999999999987765 568999
Q ss_pred EEEEEEEEEecCCCceeEEe----cceeeeecC----CccccccceeeeccccccCCCCeEEcCeEEEEEEEEE
Q 021574 91 YAVFRLFLLDQNQDNYLVVQ----NAKERRFNG----LKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVFV 156 (310)
Q Consensus 91 ~~~f~~~l~n~~~~~~~~~~----~~~~~~F~~----~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~v 156 (310)
.|+|+|+|+||.+....... +...+.|.. .+.+|||.+||++++|+ +++||+||+|+|+|+|.|
T Consensus 151 ~a~~~l~lldq~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~wG~~~Fi~~~~L~--~~gyL~dD~l~I~~~V~v 222 (228)
T 1flk_A 151 KQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDT 222 (228)
T ss_dssp CCCEEEEECCCSSSCCCEEEEECCCTTCTTSSSCSSSBCCCCSEEEEEEHHHHS--SSTTCCSSEEEEEEECCC
T ss_pred EEEEEEEEEcCCCCccceeeeecCCCccccccCCccCCCCCcCHHHeeEHHHHc--cCCCccCCEEEEEEEEEc
Confidence 99999999999987643321 122334642 35689999999999999 589999999999999988
No 15
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=99.93 E-value=3.6e-27 Score=193.83 Aligned_cols=131 Identities=27% Similarity=0.423 Sum_probs=108.9
Q ss_pred ccCcEEEEEEcceeccCC-----c--eeecceEEe--CCceEEEEEEeCCCCCCCCCeEEEEEEeCCCC-C--CCceEEE
Q 021574 173 TYSSKYVWKVENFSKLDT-----R--YEESQVFGA--GNHKWKIVLYPRGNGCGDGDHLSLYLALGDST-V--DGIKVYA 240 (310)
Q Consensus 173 ~~~~~~~~~i~~fs~~~~-----~--~~~S~~f~~--gg~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~-~--~~w~~~~ 240 (310)
+..+.|+|+|.||+.+++ + .++|++|.+ ||++|+|++||+|++.+.++|||+||++..++ . ..|++.|
T Consensus 40 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~W~~~a 119 (192)
T 1ca9_A 40 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ 119 (192)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred ccCceEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCCCcCCCceEE
Confidence 567999999999999873 2 599999999 99999999999998766678999999998875 2 6899999
Q ss_pred EEEEEEEcCCCCceeeecc-----cceeecc----CcCCccccceecccccCCCCCCeeECCEEEEEEEEEEEc
Q 021574 241 EYTLRILDQLGAKHKSLQA-----AKDWFQS----PNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLG 305 (310)
Q Consensus 241 ~~~~~l~n~~~~~~~~~~~-----~~~~F~~----~~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V~v~~ 305 (310)
+|+|.|+||+++++.. .. ....|.. .+.+|||++||++++|++ .+|||+||+|+|+|+|+|.+
T Consensus 120 ~~~l~lldq~~~~~~~-~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~-~~gyl~dD~l~I~~~V~V~~ 191 (192)
T 1ca9_A 120 KVTLMLLDQNNREHVI-DAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVDLTG 191 (192)
T ss_dssp CEEEEECCTTSSCCEE-EEECCCTTSGGGSCCSSSBCCCEEEEEEEETHHHHS-SCSSCBTTEEEEEEEECCTT
T ss_pred EEEEEEECCCCCceee-EeeccCCchhhhcCCccCCCCCcChhheeEHHHhhh-ccCCEeCCEEEEEEEEEecC
Confidence 9999999999875432 11 1223542 346899999999999995 37999999999999998854
No 16
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A
Probab=99.93 E-value=6.8e-27 Score=188.36 Aligned_cols=131 Identities=27% Similarity=0.414 Sum_probs=108.0
Q ss_pred ccCcEEEEEEcceeccCC-----c--eeecceEE--eCCceEEEEEEeCCCCCCCCCeEEEEEEeCCCC-C--CCceEEE
Q 021574 173 TYSSKYVWKVENFSKLDT-----R--YEESQVFG--AGNHKWKIVLYPRGNGCGDGDHLSLYLALGDST-V--DGIKVYA 240 (310)
Q Consensus 173 ~~~~~~~~~i~~fs~~~~-----~--~~~S~~f~--~gg~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~-~--~~w~~~~ 240 (310)
...+.|+|+|.||+.+++ + .++|++|+ +||++|+|++||+|++.+.++|||+||+|.+++ . ..|++.+
T Consensus 16 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~~~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~w~~~~ 95 (168)
T 1d00_A 16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ 95 (168)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred ccCCEEEEEECCHHHHHHHhhcCCCeEEECCCeecCCCCEEEEEEEEeCCCCCCCCcEEEEEEEEecCCCCccCCCceEE
Confidence 367899999999999872 2 38999996 789999999999998766678999999998866 2 5899999
Q ss_pred EEEEEEEcCCCCceeeeccc-----ceeecc----CcCCccccceecccccCCCCCCeeECCEEEEEEEEEEEc
Q 021574 241 EYTLRILDQLGAKHKSLQAA-----KDWFQS----PNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLG 305 (310)
Q Consensus 241 ~~~~~l~n~~~~~~~~~~~~-----~~~F~~----~~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V~v~~ 305 (310)
+|+|.|+||++.++.. ... ...|.. .+.+|||++||++++|+++ +|||+||+|+|+|+|+|.+
T Consensus 96 ~~~l~ll~q~~~~~~~-~~~~~~~~~~~f~~p~~~~~~~~G~~~Fi~~~~L~~~-~gyl~dD~l~I~~~V~v~~ 167 (168)
T 1d00_A 96 KVTLMLLDQNNREHVI-DAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAK-NSYVRDDAIFIKAIVDLTG 167 (168)
T ss_dssp CEEEEECCTTSSCCEE-EEECCCTTSGGGSCCSSSBCCCEEEEEEEETTTTTSS-SSSSBTTEEEEEEEECCTT
T ss_pred EEEEEEECCCCCccce-eccccCcchhhccCCCcCCCCCcCcceEeEHHHhccc-CCceeCCEEEEEEEEEecC
Confidence 9999999999876443 111 234643 3568999999999999974 4999999999999998753
No 17
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A
Probab=99.93 E-value=2.7e-26 Score=183.24 Aligned_cols=130 Identities=22% Similarity=0.272 Sum_probs=102.8
Q ss_pred cCcEEEEEEcceeccC-----Cc--eeecceEEeC--CceEEEEEEeCCCCCC-CCCeEEEEEEeCCCC---CCCceEEE
Q 021574 174 YSSKYVWKVENFSKLD-----TR--YEESQVFGAG--NHKWKIVLYPRGNGCG-DGDHLSLYLALGDST---VDGIKVYA 240 (310)
Q Consensus 174 ~~~~~~~~i~~fs~~~-----~~--~~~S~~f~~g--g~~w~i~~yp~g~~~~-~~~~ls~yL~~~~~~---~~~w~~~~ 240 (310)
..+.|+|+|.||+.++ ++ .+.|++|++| |++|+|++||+|++.+ +++|||+||++++++ ..+|++.|
T Consensus 3 ~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yP~G~~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a 82 (160)
T 1lb6_A 3 CNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQG 82 (160)
T ss_dssp CCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCCS
T ss_pred cCcEEEEEECCHHHHHHhhhcCCCeEEECcCeecCCCCeeEEEEEEecCCCCCCCCCEEEEEEEEeecCCCccCCCceee
Confidence 4578999999999986 33 7999999999 9999999999998754 368999999998765 34699999
Q ss_pred EEEEEEEcCCCCc---eeeecc-----cceeeccC-----cCCccccceecccccCCCCCCeeECCEEEEEEEEEEEcc
Q 021574 241 EYTLRILDQLGAK---HKSLQA-----AKDWFQSP-----NLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLGT 306 (310)
Q Consensus 241 ~~~~~l~n~~~~~---~~~~~~-----~~~~F~~~-----~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V~v~~~ 306 (310)
+|+|.|+||.+.. +.. .. ....|... ..+|||++||++++|++ +|||+||+|+|+|+|+|+.+
T Consensus 83 ~~~l~lldq~~~~~~~~~~-~~~~~~~~~~~f~~p~~~~~~~~~G~~~Fi~~~~L~~--~~yl~dD~l~I~~~V~v~~~ 158 (160)
T 1lb6_A 83 TIRLTILDQSEAPVRQNHE-EIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQ--RTFIKDDTLLVRCEVSTRFD 158 (160)
T ss_dssp EEEEEECCCSCTTSCCCEE-EEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGGT--SCCCBTTBEEEEEEEEC---
T ss_pred eEEEEEEcCCCccccccce-EEeecCCcchhccCCcccCCCCCcCEeeEeEHHHhhh--CCCccCCEEEEEEEEEEeec
Confidence 9999999998652 111 11 11234321 23799999999999995 78999999999999999764
No 18
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.93 E-value=8.7e-27 Score=191.18 Aligned_cols=131 Identities=24% Similarity=0.419 Sum_probs=108.6
Q ss_pred cCcEEEEEEcceeccC-----Cc--eeecceEEeC--CceEEEEEEeCCCCCCCCCeEEEEEEeCCCC---CCCceEEEE
Q 021574 174 YSSKYVWKVENFSKLD-----TR--YEESQVFGAG--NHKWKIVLYPRGNGCGDGDHLSLYLALGDST---VDGIKVYAE 241 (310)
Q Consensus 174 ~~~~~~~~i~~fs~~~-----~~--~~~S~~f~~g--g~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~---~~~w~~~~~ 241 (310)
..+.|+|+|.|||.++ ++ .++|++|++| |++|+|++||+|++.++++|||+||++.+++ ...|++.++
T Consensus 38 ~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gykw~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a~ 117 (192)
T 2gkw_A 38 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQK 117 (192)
T ss_dssp CSSEEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCCC
T ss_pred cCcEEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcEEEEEEEeCCCCCCCCCEEEEEEEEecCCCCccCCCcEEEE
Confidence 5789999999999986 33 5999999999 9999999999998776778999999998766 247999999
Q ss_pred EEEEEEcCCCCc-eeeecc-----cceeeccC----cCCccccceecccccCCCCCCeeECCEEEEEEEEEEEccc
Q 021574 242 YTLRILDQLGAK-HKSLQA-----AKDWFQSP----NLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLGTS 307 (310)
Q Consensus 242 ~~~~l~n~~~~~-~~~~~~-----~~~~F~~~----~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V~v~~~~ 307 (310)
|+|.|+||.+.+ +.. .. ..+.|... +.+|||++||++++|++ +|||+||+|+|+|+|.|....
T Consensus 118 ~~l~lldq~~~~~~~~-~~~~~~~~~~~F~~~~~~~~~~wG~~~Fi~~~~L~~--~gyl~dD~l~I~~~V~v~~~~ 190 (192)
T 2gkw_A 118 VTLMLMDQGSSRRHLG-DAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDLP 190 (192)
T ss_dssp EEEEECCCSTTCCCEE-EEECCCTTCTTSSCCSSSBCCCEEEEEEEEHHHHHH--TTSCBTTEEEEEEEECCTTSS
T ss_pred EEEEEECCCCCccceE-EEEecCCCcccccCCCCCCcCCCChHHEeEHHHhCc--CCCeeCCEEEEEEEEEcCCCC
Confidence 999999998864 222 11 12457542 46899999999999987 589999999999999876543
No 19
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=99.92 E-value=6.8e-26 Score=190.65 Aligned_cols=134 Identities=22% Similarity=0.368 Sum_probs=110.1
Q ss_pred ccCcEEEEEEcceeccCC-------ceeecceEEeC--CceEEEEEEeCCCCCCCCCeEEEEEEeCCCC---CCCceEEE
Q 021574 173 TYSSKYVWKVENFSKLDT-------RYEESQVFGAG--NHKWKIVLYPRGNGCGDGDHLSLYLALGDST---VDGIKVYA 240 (310)
Q Consensus 173 ~~~~~~~~~i~~fs~~~~-------~~~~S~~f~~g--g~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~---~~~w~~~~ 240 (310)
...+.|+|+|.|||.++. ..++|++|++| |++|+|++||+|++.+.++|||+||++.+++ ...|++.|
T Consensus 73 ~~~g~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~Wp~~a 152 (228)
T 1flk_A 73 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ 152 (228)
T ss_dssp CSSSEEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCEECEEEETTCCGGGTTTEEEEEECCBCCTTTTSSCSSCCC
T ss_pred CcCcEEEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcEEEEEEEcCCCCCCCCCEEEEEEEEecCCccccCCCcEEE
Confidence 367899999999999862 27999999999 9999999999998776778999999998766 24799999
Q ss_pred EEEEEEEcCCCCc-eeeec----ccceeecc----CcCCccccceecccccCCCCCCeeECCEEEEEEEEEEEcccC
Q 021574 241 EYTLRILDQLGAK-HKSLQ----AAKDWFQS----PNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLGTSE 308 (310)
Q Consensus 241 ~~~~~l~n~~~~~-~~~~~----~~~~~F~~----~~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V~v~~~~~ 308 (310)
+|+|.|+||.+.+ +.... ...+.|.. .+.+|||++||++++|++ +|||+||+|+|+|+|.|.+...
T Consensus 153 ~~~l~lldq~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~v~~~~~ 227 (228)
T 1flk_A 153 KVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDLPD 227 (228)
T ss_dssp CEEEEECCCSSSCCCEEEEECCCTTCTTSSSCSSSBCCCCSEEEEEEHHHHSS--STTCCSSEEEEEEECCCTTSCC
T ss_pred EEEEEEEcCCCCccceeeeecCCCccccccCCccCCCCCcCHHHeeEHHHHcc--CCCccCCEEEEEEEEEcccccC
Confidence 9999999998775 22200 11234642 346899999999999997 7999999999999999876543
No 20
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.91 E-value=7.5e-25 Score=193.79 Aligned_cols=130 Identities=28% Similarity=0.482 Sum_probs=108.4
Q ss_pred cCcEEEEEEcceeccC---CceeecceEEeCCc---eEEEEEEeCCCCCCCCCeEEEEEEeCCCCCCCceEEEEEEEEEE
Q 021574 174 YSSKYVWKVENFSKLD---TRYEESQVFGAGNH---KWKIVLYPRGNGCGDGDHLSLYLALGDSTVDGIKVYAEYTLRIL 247 (310)
Q Consensus 174 ~~~~~~~~i~~fs~~~---~~~~~S~~f~~gg~---~w~i~~yp~g~~~~~~~~ls~yL~~~~~~~~~w~~~~~~~~~l~ 247 (310)
..++|+|+|.||+.++ ++.+.|++|.+||+ +|+|++||+|.+.++++|+|+||+|...+ .|++.|+|+|.|+
T Consensus 5 ~~~~~~w~I~nfs~~~~~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~~~~~~~lslyL~~~~~~--~~~v~a~~~~~l~ 82 (312)
T 3hqi_A 5 VKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCP--KSEVRAKFKFSIL 82 (312)
T ss_dssp EEEEEEEEETTGGGCCCCTTCCEECCCBCC--CCCCEEEEEEETTCCC--CTTEEEEEEEEEECC--C-CEEEEEEEEEE
T ss_pred EEEEEEEEEcCcchhhhcCCCeEeeCCcccCCCCCceEEEEEECCCCCccCCCcEEEEEEEcCCC--CCcEEEEEEEEEE
Confidence 3478999999999996 67899999999985 99999999998776778999999998754 7999999999999
Q ss_pred cCCCCceeee-cccceeeccCcCCccccceecccccCCCCCCeeECCEEEEEEEEEEEcc
Q 021574 248 DQLGAKHKSL-QAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLGT 306 (310)
Q Consensus 248 n~~~~~~~~~-~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V~v~~~ 306 (310)
||+++..... ....+.|.. ..+|||++||+|++|+++.+|||+||+|+|+|+|+|++.
T Consensus 83 ~~~~~~~~~~~~~~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~~ 141 (312)
T 3hqi_A 83 NAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQD 141 (312)
T ss_dssp CTTSCEEEEEECSSCEEECT-TCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEEE
T ss_pred eCCCCcccccccCCceeCCC-CCCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEec
Confidence 9998764431 245678874 468999999999999987789999999999999999953
No 21
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.90 E-value=3.7e-24 Score=201.98 Aligned_cols=136 Identities=21% Similarity=0.332 Sum_probs=112.9
Q ss_pred ccCcEEEEEEcceeccCCceeecceEEeCCceEEEEEEeCCCCCC-CCCeEEEEEEeCCCC-CCCceEEEEEEEEEEcCC
Q 021574 173 TYSSKYVWKVENFSKLDTRYEESQVFGAGNHKWKIVLYPRGNGCG-DGDHLSLYLALGDST-VDGIKVYAEYTLRILDQL 250 (310)
Q Consensus 173 ~~~~~~~~~i~~fs~~~~~~~~S~~f~~gg~~w~i~~yp~g~~~~-~~~~ls~yL~~~~~~-~~~w~~~~~~~~~l~n~~ 250 (310)
...+.|+|+|.|||.+++ .++|++|.+||++|+|.+||+|+..+ +++|||+||.|.... ...|.+.|+|+|.|+|+.
T Consensus 28 ~~~~~~~w~I~nfS~~~~-~~~S~~F~vgg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~~~~~~w~v~a~f~l~l~n~~ 106 (522)
T 2f1z_A 28 RSEATFQFTVERFSRLSE-SVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAESDSTSWSCHAQAVLKIINYR 106 (522)
T ss_dssp CSEEEEEEEESSCTTCCS-CEECCCEEETTEEEEEEECBC--------CBBCEEEEESTTCCCSSCBEEEEEEEEECCTT
T ss_pred cCCcEEEEEECChhhcCC-ceeCCCEEECCEeeEEEEEeCCCCCCCCCCeEEEEEEecCCCCCCCceEEEEEEEEEEcCC
Confidence 456889999999999985 89999999999999999999997543 568999999998765 568999999999999998
Q ss_pred CCceeeecccceeeccCcCCccccceecccccCCCCCCeeECCEEEEEEEEEEEcccCC
Q 021574 251 GAKHKSLQAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLGTSEP 309 (310)
Q Consensus 251 ~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V~v~~~~~~ 309 (310)
++.....+...++|.....+|||.+||++++|.++++|||+||+++|+|.|+|...+|.
T Consensus 107 ~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~p~g~ 165 (522)
T 2f1z_A 107 DDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGV 165 (522)
T ss_dssp CGGGCEEEECCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECCCBSS
T ss_pred CCccceeccceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeeccccccc
Confidence 76533225667888877788999999999999877789999999999999999766653
No 22
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.90 E-value=6.2e-24 Score=200.46 Aligned_cols=137 Identities=18% Similarity=0.292 Sum_probs=112.5
Q ss_pred cccCCceEEEEEccccccccccccceEEeccEEeCCeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCCCCCcEEEEEEE
Q 021574 16 SHVSPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNVKDHISLYLAMADTNSLNFGLEVYAVFR 95 (310)
Q Consensus 16 ~~~~~~~~~w~I~~fs~~~~~~~~~~~~S~~f~~~G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~~~~w~~~~~f~ 95 (310)
.....++|+|+|+|||.+++ .++|++|.+||++|+|.+||+|+...++.+|||+||.|.+.. .+..|.+.|+|+
T Consensus 26 ~~~~~~~~~w~I~nfS~~~~-----~~~S~~F~vgg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~~-~~~~w~v~a~f~ 99 (522)
T 2f1z_A 26 SWRSEATFQFTVERFSRLSE-----SVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAES-DSTSWSCHAQAV 99 (522)
T ss_dssp CCCSEEEEEEEESSCTTCCS-----CEECCCEEETTEEEEEEECBC--------CBBCEEEEESTTC-CCSSCBEEEEEE
T ss_pred cccCCcEEEEEECChhhcCC-----ceeCCCEEECCEeeEEEEEeCCCCCCCCCCeEEEEEEecCCC-CCCCceEEEEEE
Confidence 34568999999999999965 789999999999999999999975223678999999998773 477899999999
Q ss_pred EEEEecCCCceeEEecceeeeecCCccccccceeeeccccccCCCCeEEcCeEEEEEEEEE-Eee
Q 021574 96 LFLLDQNQDNYLVVQNAKERRFNGLKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVFV-KER 159 (310)
Q Consensus 96 ~~l~n~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~v-~~~ 159 (310)
|.|+|+.++..... ....+.|.....+|||.+||++++|.+++++||.||+++|+|+|.| .+.
T Consensus 100 l~l~n~~~~~~~~~-~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~p~ 163 (522)
T 2f1z_A 100 LKIINYRDDEKSFS-RRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPH 163 (522)
T ss_dssp EEECCTTCGGGCEE-EECCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECCCB
T ss_pred EEEEcCCCCcccee-ccceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeeccccc
Confidence 99999998765433 2356788877789999999999999877899999999999999999 543
No 23
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*
Probab=99.56 E-value=1.2e-14 Score=136.36 Aligned_cols=131 Identities=20% Similarity=0.263 Sum_probs=105.8
Q ss_pred ccccCCceEEEEEccccccccccccceEEeccEEe-CCeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCC-CCCcEEE-
Q 021574 15 TSHVSPAHYVVKIKSFSFLAEKAVEVKYESAAFEA-GGYKWKLVLYPNGNESKNVKDHISLYLAMADTNSL-NFGLEVY- 91 (310)
Q Consensus 15 ~~~~~~~~~~w~I~~fs~~~~~~~~~~~~S~~f~~-~G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~-~~~w~~~- 91 (310)
+.+..+..+.|+|.||+++...++. .++||+|.. .||+++|.++|++ ..|+|+|++|++++.+ .+.||+.
T Consensus 400 ~t~G~CP~~vw~i~nfs~~l~~~~~-~~~Sp~Fys~~GY~~~v~l~~~~------~~~~~~~~~l~sG~~D~~L~WP~~~ 472 (592)
T 4gwm_A 400 LSETRCPHHIWHIRNFTQFIGSPNG-TLYSPPFYSSKGYAFQIYLNLAH------VTNAGIYFHLISGANDDQLQWPCPW 472 (592)
T ss_dssp EESSCCCSEEEEECSCGGGTTCTTC-EEECCCEECTTSCEEEEEEECCS------SSEEEEEEEEECCTTGGGSCSSCCS
T ss_pred EeeCCCCCCceeecCHHHhhcCCCC-ceeCCCccCCCCeEEEEEEecCC------CceEEEEEEEecCCCCCCccCCCCC
Confidence 3677889999999999999876555 899999974 8999999999875 3689999999999887 8899994
Q ss_pred EEEEEEEEecCCCceeEEecceeee---------------------------ecC-----CccccccceeeeccccccCC
Q 021574 92 AVFRLFLLDQNQDNYLVVQNAKERR---------------------------FNG-----LKLEWGFDQFISHKAFKEAS 139 (310)
Q Consensus 92 ~~f~~~l~n~~~~~~~~~~~~~~~~---------------------------F~~-----~~~~~G~~~fi~~~~l~~~~ 139 (310)
-+++|+|++|++.....+ ..... |.. .+.+|||+.||+++.|. +
T Consensus 473 ~q~t~~llDQ~pd~~~rm--s~~~s~ttdp~~~~~~~~~~w~~P~~~g~~~~~~~~~~~~r~~~~G~~~fish~~l~--~ 548 (592)
T 4gwm_A 473 QQATMTLLDQNPDIRQRM--SNQRSITTDPFMTTDNGNYFWDRPSKVGTVALFSNGTQFRRGGGYGTSAFITHERLK--S 548 (592)
T ss_dssp EEEEEEECCCCSSGGGCC--CEEEEEECCTTCBCTTSCBTTSCHHHHCEEEECTTCCEEEEEEEEEEEEEEEHHHHT--S
T ss_pred CEEEEEEeCCCCChHhcC--ceeEEEEcCCcccCcccccccCCcccccccccccCCcceeecCCcCccccccHHHHh--h
Confidence 789999999987643222 01111 111 13468999999999999 6
Q ss_pred CCeEEcCeEEEEEEEEE
Q 021574 140 NGYLVEDTCVFGAEVFV 156 (310)
Q Consensus 140 ~~yl~~d~l~i~~~v~v 156 (310)
..||+||.|+|.++|.-
T Consensus 549 r~fiK~d~~~i~~~~eD 565 (592)
T 4gwm_A 549 RDFIKGDDVYILLTVED 565 (592)
T ss_dssp TTSSBTTBEEEEEEEEE
T ss_pred cCcccCCeEEEEEEEEe
Confidence 78999999999999965
No 24
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*
Probab=99.50 E-value=1.2e-12 Score=122.87 Aligned_cols=124 Identities=17% Similarity=0.231 Sum_probs=97.4
Q ss_pred ccCcEEEEEEcceeccC---CceeecceEEe-CCceEEEEEEeCCCCCCCCCeEEEEEEeCCCC---CCCceE-EEEEEE
Q 021574 173 TYSSKYVWKVENFSKLD---TRYEESQVFGA-GNHKWKIVLYPRGNGCGDGDHLSLYLALGDST---VDGIKV-YAEYTL 244 (310)
Q Consensus 173 ~~~~~~~~~i~~fs~~~---~~~~~S~~f~~-gg~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~---~~~w~~-~~~~~~ 244 (310)
-++..+.|+|.||+++. +..++||.|+. .||.++|.+||++ ..++|+|++|++++ ...||+ .-+++|
T Consensus 403 G~CP~~vw~i~nfs~~l~~~~~~~~Sp~Fys~~GY~~~v~l~~~~-----~~~~~~~~~l~sG~~D~~L~WP~~~~q~t~ 477 (592)
T 4gwm_A 403 TRCPHHIWHIRNFTQFIGSPNGTLYSPPFYSSKGYAFQIYLNLAH-----VTNAGIYFHLISGANDDQLQWPCPWQQATM 477 (592)
T ss_dssp SCCCSEEEEECSCGGGTTCTTCEEECCCEECTTSCEEEEEEECCS-----SSEEEEEEEEECCTTGGGSCSSCCSEEEEE
T ss_pred CCCCCCceeecCHHHhhcCCCCceeCCCccCCCCeEEEEEEecCC-----CceEEEEEEEecCCCCCCccCCCCCCEEEE
Confidence 34557999999999987 46899999987 6999999999976 35999999999988 468999 578999
Q ss_pred EEEcCCCCceeeeccccee---------------ec------------c-----CcCCccccceecccccCCCCCCeeEC
Q 021574 245 RILDQLGAKHKSLQAAKDW---------------FQ------------S-----PNLTWGWTRFISFSELNKPGTGFLVN 292 (310)
Q Consensus 245 ~l~n~~~~~~~~~~~~~~~---------------F~------------~-----~~~~~G~~~fi~~~~L~~~~~g~l~d 292 (310)
.|++|++..... +..... |. . ++.+|||+.||+++.|.. +.||+|
T Consensus 478 ~llDQ~pd~~~r-ms~~~s~ttdp~~~~~~~~~~w~~P~~~g~~~~~~~~~~~~r~~~~G~~~fish~~l~~--r~fiK~ 554 (592)
T 4gwm_A 478 TLLDQNPDIRQR-MSNQRSITTDPFMTTDNGNYFWDRPSKVGTVALFSNGTQFRRGGGYGTSAFITHERLKS--RDFIKG 554 (592)
T ss_dssp EECCCCSSGGGC-CCEEEEEECCTTCBCTTSCBTTSCHHHHCEEEECTTCCEEEEEEEEEEEEEEEHHHHTS--TTSSBT
T ss_pred EEeCCCCChHhc-CceeEEEEcCCcccCcccccccCCcccccccccccCCcceeecCCcCccccccHHHHhh--cCcccC
Confidence 999997654211 111111 11 1 124689999999999996 569999
Q ss_pred CEEEEEEEEEEE
Q 021574 293 DVCVVEAEVTVL 304 (310)
Q Consensus 293 D~l~i~~~V~v~ 304 (310)
|.|+|.+.|+-+
T Consensus 555 d~~~i~~~~eD~ 566 (592)
T 4gwm_A 555 DDVYILLTVEDI 566 (592)
T ss_dssp TBEEEEEEEEEC
T ss_pred CeEEEEEEEEeC
Confidence 999999999755
No 25
>3v0r_A Major allergen ALT A 1; beta-barrel, cell WALL, unknown function; HET: 0FU 8AC; 1.90A {Alternaria alternata}
Probab=41.01 E-value=6.9 Score=28.59 Aligned_cols=29 Identities=31% Similarity=0.524 Sum_probs=22.2
Q ss_pred eccCcEEEEEEcceeccC--CceeecceEEe
Q 021574 172 FTYSSKYVWKVENFSKLD--TRYEESQVFGA 200 (310)
Q Consensus 172 ~~~~~~~~~~i~~fs~~~--~~~~~S~~f~~ 200 (310)
++..+-+.|+|.+|+..+ +..+.|..|.+
T Consensus 8 v~~~gd~vwkIs~F~~RKpeGty~nsvsFnI 38 (133)
T 3v0r_A 8 VTTEGDYVWKISEFYGRKPEGTYYNSLGFNI 38 (133)
T ss_dssp SCCCCTTEEEEEEEEEEETTSSSCSEEEEEE
T ss_pred cccCCceEEEeeeeeeEcCCCCceeeEEEEE
Confidence 466788999999999988 55566666655
No 26
>3v0r_A Major allergen ALT A 1; beta-barrel, cell WALL, unknown function; HET: 0FU 8AC; 1.90A {Alternaria alternata}
Probab=39.58 E-value=9 Score=27.99 Aligned_cols=32 Identities=25% Similarity=0.314 Sum_probs=22.7
Q ss_pred cccCCceEEEEEccccccccccccceEEeccEEe
Q 021574 16 SHVSPAHYVVKIKSFSFLAEKAVEVKYESAAFEA 49 (310)
Q Consensus 16 ~~~~~~~~~w~I~~fs~~~~~~~~~~~~S~~f~~ 49 (310)
+-+..|-+.|+|.+|+..+.++ . .+.|-.|.+
T Consensus 7 pv~~~gd~vwkIs~F~~RKpeG-t-y~nsvsFnI 38 (133)
T 3v0r_A 7 PVTTEGDYVWKISEFYGRKPEG-T-YYNSLGFNI 38 (133)
T ss_dssp SSCCCCTTEEEEEEEEEEETTS-S-SCSEEEEEE
T ss_pred ccccCCceEEEeeeeeeEcCCC-C-ceeeEEEEE
Confidence 3455789999999999997642 2 556666643
Done!