Query 021576
Match_columns 310
No_of_seqs 217 out of 372
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 06:09:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021576.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021576hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmd_A CGMP dependent protein 90.5 0.45 1.5E-05 35.7 5.3 32 80-111 26-57 (72)
2 3nmd_A CGMP dependent protein 77.3 4.3 0.00015 30.3 5.2 34 78-111 31-64 (72)
3 2oqq_A Transcription factor HY 70.4 10 0.00036 25.3 5.2 25 80-104 6-30 (42)
4 1lq7_A Alpha3W; three helix bu 65.0 12 0.00041 26.5 4.9 33 78-110 26-64 (67)
5 1zxa_A CGMP-dependent protein 55.3 22 0.00076 26.1 5.1 34 79-112 17-50 (67)
6 2oqq_A Transcription factor HY 52.4 21 0.00072 23.8 4.1 25 86-110 5-29 (42)
7 3he4_B Synzip5; heterodimeric 50.2 23 0.00079 23.3 4.0 26 79-104 5-30 (46)
8 3a7o_A Autophagy protein 16; c 43.8 31 0.001 25.6 4.3 29 81-109 19-47 (75)
9 1k1f_A Breakpoint cluster regi 39.4 37 0.0012 24.9 4.1 22 83-104 29-50 (72)
10 4egx_A Kinesin-like protein KI 39.0 39 0.0013 28.9 5.1 26 92-117 28-53 (184)
11 3he4_B Synzip5; heterodimeric 36.8 89 0.003 20.5 5.2 21 87-107 6-26 (46)
12 2do5_A Splicing factor 3B subu 34.8 46 0.0016 23.2 3.8 25 99-123 31-55 (58)
13 1zxa_A CGMP-dependent protein 31.0 51 0.0018 24.1 3.8 24 85-108 16-39 (67)
14 2b5u_A Colicin E3; high resolu 28.6 55 0.0019 32.7 4.7 20 78-97 292-311 (551)
15 2yy0_A C-MYC-binding protein; 27.5 85 0.0029 21.6 4.3 27 80-106 22-48 (53)
16 3ktp_B Trinucleotide repeat-co 27.4 19 0.00066 20.9 0.7 11 119-129 3-14 (22)
17 2js5_A Uncharacterized protein 27.2 98 0.0033 22.9 4.8 15 131-145 27-41 (71)
18 2f95_B Sensory rhodopsin II tr 27.1 13 0.00045 29.3 0.0 8 117-124 156-163 (163)
19 2lw1_A ABC transporter ATP-bin 24.6 94 0.0032 23.2 4.5 28 84-111 19-46 (89)
20 1y66_A Engrailed homeodomain; 23.9 72 0.0025 21.4 3.2 17 80-96 6-22 (52)
21 2qdq_A Talin-1; dimerisation d 23.9 79 0.0027 21.8 3.5 20 85-104 13-32 (50)
22 3a7o_A Autophagy protein 16; c 23.5 1.4E+02 0.0049 22.0 5.0 28 79-106 24-51 (75)
23 3p01_A Two-component response 23.3 64 0.0022 25.7 3.6 21 228-249 130-150 (184)
24 2oxj_A Hybrid alpha/beta pepti 23.2 1.4E+02 0.0048 18.9 4.2 22 79-100 3-24 (34)
25 3p01_A Two-component response 22.6 53 0.0018 26.3 2.9 20 78-97 11-30 (184)
26 3qh9_A Liprin-beta-2; coiled-c 22.1 68 0.0023 24.3 3.1 18 88-105 55-72 (81)
27 3t97_B Nuclear pore complex pr 22.0 1.2E+02 0.004 22.0 4.3 27 80-106 20-46 (65)
28 1t6f_A Geminin; coiled-coil, c 21.0 1.4E+02 0.0047 19.2 3.9 18 81-98 8-25 (37)
29 3csx_A Putative uncharacterize 20.6 45 0.0015 25.3 1.9 17 131-147 39-55 (81)
30 2pnv_A Small conductance calci 20.6 1.3E+02 0.0044 20.0 3.9 25 80-104 12-36 (43)
No 1
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=90.52 E-value=0.45 Score=35.66 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=22.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 021576 80 ADLKKKEKELQAKEAELRRREQDVRRKEEAAA 111 (310)
Q Consensus 80 ~~l~~k~~EL~~kE~EL~rRE~eL~~re~~~~ 111 (310)
..|++|.+||.+|++.+++.|.+|..++..++
T Consensus 26 ~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~ 57 (72)
T 3nmd_A 26 YALQEKIEELRQRDALIDELELELDQKDELIQ 57 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777887777777777777776665444
No 2
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=77.26 E-value=4.3 Score=30.32 Aligned_cols=34 Identities=12% Similarity=0.298 Sum_probs=24.0
Q ss_pred chHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 021576 78 TAADLKKKEKELQAKEAELRRREQDVRRKEEAAA 111 (310)
Q Consensus 78 ~~~~l~~k~~EL~~kE~EL~rRE~eL~~re~~~~ 111 (310)
.-++|..|++.++.+|.+|+.+|.+++.-..++.
T Consensus 31 K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 31 KIEELRQRDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777788888888777776555544
No 3
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=70.44 E-value=10 Score=25.30 Aligned_cols=25 Identities=28% Similarity=0.546 Sum_probs=19.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhH
Q 021576 80 ADLKKKEKELQAKEAELRRREQDVR 104 (310)
Q Consensus 80 ~~l~~k~~EL~~kE~EL~rRE~eL~ 104 (310)
.||+.|.++|+.|-+||+.|=.-|+
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq 30 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQ 30 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888899988888887765554
No 4
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=64.96 E-value=12 Score=26.48 Aligned_cols=33 Identities=39% Similarity=0.541 Sum_probs=25.4
Q ss_pred chHHHHHhHHHHHHHHHHH------HHHHHhhHHHHHHH
Q 021576 78 TAADLKKKEKELQAKEAEL------RRREQDVRRKEEAA 110 (310)
Q Consensus 78 ~~~~l~~k~~EL~~kE~EL------~rRE~eL~~re~~~ 110 (310)
+-++|++|=+||.+|-+|| ++-|+|.+..|+++
T Consensus 26 rieelkkkweelkkkieelggggevkkveeevkkleeei 64 (67)
T 1lq7_A 26 RIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEEI 64 (67)
T ss_dssp SHHHHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 4678999999999998887 56677777666554
No 5
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=55.34 E-value=22 Score=26.05 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=24.8
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 021576 79 AADLKKKEKELQAKEAELRRREQDVRRKEEAAAR 112 (310)
Q Consensus 79 ~~~l~~k~~EL~~kE~EL~rRE~eL~~re~~~~~ 112 (310)
++.++.|++.....|.+|+.+++++++...++.+
T Consensus 17 ~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK 50 (67)
T 1zxa_A 17 AKILMLKEERIKELEKRLSEKEEEIQELKRKLHK 50 (67)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888888888765444443
No 6
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=52.42 E-value=21 Score=23.84 Aligned_cols=25 Identities=12% Similarity=0.304 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHH
Q 021576 86 EKELQAKEAELRRREQDVRRKEEAA 110 (310)
Q Consensus 86 ~~EL~~kE~EL~rRE~eL~~re~~~ 110 (310)
-.||+.|+.+|+.|-.||..|-..+
T Consensus 5 l~eLE~r~k~le~~naeLEervstL 29 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTL 29 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588889999988888887765433
No 7
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=50.17 E-value=23 Score=23.33 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=17.0
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHhhH
Q 021576 79 AADLKKKEKELQAKEAELRRREQDVR 104 (310)
Q Consensus 79 ~~~l~~k~~EL~~kE~EL~rRE~eL~ 104 (310)
.++|+.--+||+.|.+||+...+.|+
T Consensus 5 vkelknyiqeleernaelknlkehlk 30 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLKEHLK 30 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHHHHH
Confidence 35677777777777777776544443
No 8
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=43.79 E-value=31 Score=25.63 Aligned_cols=29 Identities=34% Similarity=0.461 Sum_probs=18.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhHHHHHH
Q 021576 81 DLKKKEKELQAKEAELRRREQDVRRKEEA 109 (310)
Q Consensus 81 ~l~~k~~EL~~kE~EL~rRE~eL~~re~~ 109 (310)
.+..-++||..||+|+.+.++.++-+...
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd 47 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIALKNKN 47 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34556677777777777776666544433
No 9
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=39.43 E-value=37 Score=24.95 Aligned_cols=22 Identities=41% Similarity=0.564 Sum_probs=16.6
Q ss_pred HHhHHHHHHHHHHHHHHHHhhH
Q 021576 83 KKKEKELQAKEAELRRREQDVR 104 (310)
Q Consensus 83 ~~k~~EL~~kE~EL~rRE~eL~ 104 (310)
.--+.||++..+-++|.|+|+.
T Consensus 29 gdiEqeLe~Ck~sIrrLE~evn 50 (72)
T 1k1f_A 29 GDIEQELERAKASIRRLEQEVN 50 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 3356788888888888888875
No 10
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=39.00 E-value=39 Score=28.94 Aligned_cols=26 Identities=31% Similarity=0.378 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHhcCCCC
Q 021576 92 KEAELRRREQDVRRKEEAAARAGIVL 117 (310)
Q Consensus 92 kE~EL~rRE~eL~~re~~~~~~g~~~ 117 (310)
||+.|++-|+..+.|+.++++.|+..
T Consensus 28 WeeKl~~te~~~~e~~~~l~~~gi~~ 53 (184)
T 4egx_A 28 WEEKLRRTEAIRMEREALLAEMGVAM 53 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcch
Confidence 44555444444456777777777543
No 11
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=36.75 E-value=89 Score=20.51 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHH
Q 021576 87 KELQAKEAELRRREQDVRRKE 107 (310)
Q Consensus 87 ~EL~~kE~EL~rRE~eL~~re 107 (310)
+||+.--+||++|.+||++..
T Consensus 6 kelknyiqeleernaelknlk 26 (46)
T 3he4_B 6 KELKNYIQELEERNAELKNLK 26 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHhHH
Confidence 456666666666666665543
No 12
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.79 E-value=46 Score=23.21 Aligned_cols=25 Identities=36% Similarity=0.500 Sum_probs=12.2
Q ss_pred HHHhhHHHHHHHHhcCCCCccCCCC
Q 021576 99 REQDVRRKEEAAARAGIVLEEKNWP 123 (310)
Q Consensus 99 RE~eL~~re~~~~~~g~~~~~~NwP 123 (310)
||+-+.|.+--..+.|....++|-|
T Consensus 31 REElvdRLk~Y~~QtGi~lnkP~~~ 55 (58)
T 2do5_A 31 REELVERLQSYTRQTGIVLNRPSGP 55 (58)
T ss_dssp HHHHHHHHHHHHHHHCCCCCCTTCS
T ss_pred HHHHHHHHHHHhhccceeecCCCCC
Confidence 3433333333334557665566655
No 13
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=30.99 E-value=51 Score=24.08 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHH
Q 021576 85 KEKELQAKEAELRRREQDVRRKEE 108 (310)
Q Consensus 85 k~~EL~~kE~EL~rRE~eL~~re~ 108 (310)
.++.|..|++.+++.|.+|..+.+
T Consensus 16 ~~~~i~~Kde~I~eLE~~L~~kd~ 39 (67)
T 1zxa_A 16 FAKILMLKEERIKELEKRLSEKEE 39 (67)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccHHHHHHHHHHHHHHHH
Confidence 444555555555555555544433
No 14
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=28.58 E-value=55 Score=32.74 Aligned_cols=20 Identities=15% Similarity=0.360 Sum_probs=15.7
Q ss_pred chHHHHHhHHHHHHHHHHHH
Q 021576 78 TAADLKKKEKELQAKEAELR 97 (310)
Q Consensus 78 ~~~~l~~k~~EL~~kE~EL~ 97 (310)
+..++++||||-+|+++|-+
T Consensus 292 t~~elkqrqeee~r~~qew~ 311 (551)
T 2b5u_A 292 SPDQVKQRQDEENRRQQEWD 311 (551)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhh
Confidence 45788888888888888764
No 15
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=27.46 E-value=85 Score=21.65 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=18.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhHHH
Q 021576 80 ADLKKKEKELQAKEAELRRREQDVRRK 106 (310)
Q Consensus 80 ~~l~~k~~EL~~kE~EL~rRE~eL~~r 106 (310)
+.|++.-+||++|=++|.++-+|+++|
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677777777777766666654
No 16
>3ktp_B Trinucleotide repeat-containing gene 6C protein; protein-protein complex, methylation, mRNA processing, mRNA nucleus, phosphoprotein, RNA-binding; 1.50A {Homo sapiens}
Probab=27.41 E-value=19 Score=20.85 Aligned_cols=11 Identities=55% Similarity=1.343 Sum_probs=7.1
Q ss_pred cCCCCC-Ccccc
Q 021576 119 EKNWPP-FFPII 129 (310)
Q Consensus 119 ~~NwPp-f~P~~ 129 (310)
..|||| |.|-+
T Consensus 3 ~~sWpPef~pg~ 14 (22)
T 3ktp_B 3 SINWPPEFHPGV 14 (26)
T ss_pred cccCCcccccCC
Confidence 368999 54543
No 17
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=27.23 E-value=98 Score=22.85 Aligned_cols=15 Identities=33% Similarity=0.764 Sum_probs=7.2
Q ss_pred ccccccchHHHHHHH
Q 021576 131 HDIANEIPIHLQRLQ 145 (310)
Q Consensus 131 hDI~~EIP~~~q~~v 145 (310)
||+++|+|...+++.
T Consensus 27 HDLaEdLP~~w~~i~ 41 (71)
T 2js5_A 27 HDLAEDLPTGWNRIM 41 (71)
T ss_dssp HHHHHSTTTSGGGHH
T ss_pred HHHhccchhhHHHHH
Confidence 455555554444433
No 18
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=27.07 E-value=13 Score=29.26 Aligned_cols=8 Identities=0% Similarity=-0.101 Sum_probs=0.0
Q ss_pred CccCCCCC
Q 021576 117 LEEKNWPP 124 (310)
Q Consensus 117 ~~~~NwPp 124 (310)
+.+|+.||
T Consensus 156 ~~~~~~~~ 163 (163)
T 2f95_B 156 SHHHHHHH 163 (163)
T ss_dssp --------
T ss_pred CCccccCC
Confidence 44555554
No 19
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=24.62 E-value=94 Score=23.20 Aligned_cols=28 Identities=21% Similarity=0.219 Sum_probs=21.3
Q ss_pred HhHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 021576 84 KKEKELQAKEAELRRREQDVRRKEEAAA 111 (310)
Q Consensus 84 ~k~~EL~~kE~EL~rRE~eL~~re~~~~ 111 (310)
+.++||+..++++.+.|+++..-+..++
T Consensus 19 keqrEle~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567888888888888888877666554
No 20
>1y66_A Engrailed homeodomain; protein design, dioxane, de novo protein; 1.65A {Escherichia coli} PDB: 2p6j_A
Probab=23.94 E-value=72 Score=21.44 Aligned_cols=17 Identities=24% Similarity=0.487 Sum_probs=8.8
Q ss_pred HHHHHhHHHHHHHHHHH
Q 021576 80 ADLKKKEKELQAKEAEL 96 (310)
Q Consensus 80 ~~l~~k~~EL~~kE~EL 96 (310)
++.++|-+|.-||-+|+
T Consensus 6 eeverklkefvrrhqei 22 (52)
T 1y66_A 6 EEVERKLKEFVRRHQEI 22 (52)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555555555444
No 21
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=23.93 E-value=79 Score=21.82 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHHhhH
Q 021576 85 KEKELQAKEAELRRREQDVR 104 (310)
Q Consensus 85 k~~EL~~kE~EL~rRE~eL~ 104 (310)
.++++-|+|+||+.-.+.|.
T Consensus 13 Aqe~iLr~ErELEeAr~~La 32 (50)
T 2qdq_A 13 AQEEMLRKERELEEARKKLA 32 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445566666666555554
No 22
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=23.48 E-value=1.4e+02 Score=22.01 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=17.3
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHhhHHH
Q 021576 79 AADLKKKEKELQAKEAELRRREQDVRRK 106 (310)
Q Consensus 79 ~~~l~~k~~EL~~kE~EL~rRE~eL~~r 106 (310)
+++|..|+.|..+.++.++-|.++..+.
T Consensus 24 r~eL~~Ke~eI~~L~e~i~lk~kd~ErL 51 (75)
T 3a7o_A 24 QKELKSKEQEIRRLKEVIALKNKNTERL 51 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHh
Confidence 4567777777766666666555554443
No 23
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=23.25 E-value=64 Score=25.72 Aligned_cols=21 Identities=33% Similarity=0.593 Sum_probs=12.2
Q ss_pred hhhhccCcccccCccccchhhH
Q 021576 228 IFASVAPPIIFKGKSLTGVLPA 249 (310)
Q Consensus 228 v~~aIG~P~~f~g~g~~G~i~a 249 (310)
+-..+++|...+| ...|.+..
T Consensus 130 ~~s~l~vPL~~~~-~~~GvL~l 150 (184)
T 3p01_A 130 IQSHVVIPITYRN-EMLGVLSL 150 (184)
T ss_dssp CCEEEEEEEEETT-EEEEEEEE
T ss_pred ccEEEEEEEEECC-EEEEEEEe
Confidence 3456677865443 44676664
No 24
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=23.21 E-value=1.4e+02 Score=18.92 Aligned_cols=22 Identities=27% Similarity=0.253 Sum_probs=15.3
Q ss_pred hHHHHHhHHHHHHHHHHHHHHH
Q 021576 79 AADLKKKEKELQAKEAELRRRE 100 (310)
Q Consensus 79 ~~~l~~k~~EL~~kE~EL~rRE 100 (310)
+..|+.|-+||..+..||+..-
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV 24 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEV 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHH
Confidence 4567778888887777776433
No 25
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=22.55 E-value=53 Score=26.26 Aligned_cols=20 Identities=30% Similarity=0.405 Sum_probs=10.9
Q ss_pred chHHHHHhHHHHHHHHHHHH
Q 021576 78 TAADLKKKEKELQAKEAELR 97 (310)
Q Consensus 78 ~~~~l~~k~~EL~~kE~EL~ 97 (310)
.-++|+++.+||++++++++
T Consensus 11 ~~~~l~~~~~~l~~~~~~~~ 30 (184)
T 3p01_A 11 TYDLLKQRTEELRRANAQMS 30 (184)
T ss_dssp THHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34456666666655555443
No 26
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=22.09 E-value=68 Score=24.31 Aligned_cols=18 Identities=11% Similarity=0.398 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHhhHH
Q 021576 88 ELQAKEAELRRREQDVRR 105 (310)
Q Consensus 88 EL~~kE~EL~rRE~eL~~ 105 (310)
||....+.|..++.|+++
T Consensus 55 El~~Lq~qLe~kd~ei~r 72 (81)
T 3qh9_A 55 EVAQLQEQVALKDAEIER 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHH
Confidence 333333333344444433
No 27
>3t97_B Nuclear pore complex protein NUP54; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=21.98 E-value=1.2e+02 Score=22.03 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=16.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhHHH
Q 021576 80 ADLKKKEKELQAKEAELRRREQDVRRK 106 (310)
Q Consensus 80 ~~l~~k~~EL~~kE~EL~rRE~eL~~r 106 (310)
.||+++.....+|-+|.+||-.||..|
T Consensus 20 ~eLq~~~~~~~aki~e~krkl~eLsHR 46 (65)
T 3t97_B 20 SELQKNQTTTMAKIAQYKRKLMDLSHR 46 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 456666666666666666666666544
No 28
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=21.03 E-value=1.4e+02 Score=19.22 Aligned_cols=18 Identities=33% Similarity=0.549 Sum_probs=12.4
Q ss_pred HHHHhHHHHHHHHHHHHH
Q 021576 81 DLKKKEKELQAKEAELRR 98 (310)
Q Consensus 81 ~l~~k~~EL~~kE~EL~r 98 (310)
|-++-.+|++.|.+|+.+
T Consensus 8 ENekLhk~ie~KdeeIa~ 25 (37)
T 1t6f_A 8 ENEKLHKEIEQKDNEIAR 25 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445666777777777766
No 29
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=20.64 E-value=45 Score=25.29 Aligned_cols=17 Identities=29% Similarity=0.550 Sum_probs=8.9
Q ss_pred ccccccchHHHHHHHHH
Q 021576 131 HDIANEIPIHLQRLQYV 147 (310)
Q Consensus 131 hDI~~EIP~~~q~~v~~ 147 (310)
||+++|+|...+++.-+
T Consensus 39 HDLaEdLP~~w~~i~~v 55 (81)
T 3csx_A 39 HDLAEGLPTDYENLVET 55 (81)
T ss_dssp HHHHHHTTTTGGGHHHH
T ss_pred HHHHccchhhHHHHHHH
Confidence 55555555555554433
No 30
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=20.64 E-value=1.3e+02 Score=20.01 Aligned_cols=25 Identities=12% Similarity=0.363 Sum_probs=16.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhH
Q 021576 80 ADLKKKEKELQAKEAELRRREQDVR 104 (310)
Q Consensus 80 ~~l~~k~~EL~~kE~EL~rRE~eL~ 104 (310)
.|+..++++|++|-.-|+.|=..|+
T Consensus 12 sel~~r~e~LE~Ri~~LE~KLd~L~ 36 (43)
T 2pnv_A 12 SDLNERSEDFEKRIVTLETKLETLI 36 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4777788888777666655444443
Done!