BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021577
         (310 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1R8W|A Chain A, Native Structure Of The B12-Independent Glycerol
           Dehydratase From Clostridium Butyricum
 pdb|1R8W|B Chain B, Native Structure Of The B12-Independent Glycerol
           Dehydratase From Clostridium Butyricum
 pdb|1R9D|A Chain A, Glycerol Bound Form Of The B12-Independent Glycerol
           Dehydratase From Clostridium Butyricum
 pdb|1R9D|B Chain B, Glycerol Bound Form Of The B12-Independent Glycerol
           Dehydratase From Clostridium Butyricum
 pdb|1R9E|A Chain A, Structure Of The B12-Independent Glycerol Dehydratase With
           1,2-Propanediol Bound
 pdb|1R9E|B Chain B, Structure Of The B12-Independent Glycerol Dehydratase With
           1,2-Propanediol Bound
          Length = 787

 Score = 30.0 bits (66), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 61/289 (21%), Positives = 113/289 (39%), Gaps = 44/289 (15%)

Query: 13  WNLEDVRTTFLKCVGWQTEETLDPINCPYHYYCDSTYPGNYPPAVD---VLVLVYTAVSY 69
           WN    +TT      + TEET + +NC      +  Y G    +VD   VL + +  +  
Sbjct: 126 WN---GKTTSELATSYMTEETREAVNCDVFTVGNYYYNGVGHVSVDYGKVLRVGFNGIIN 182

Query: 70  LATLLLMVVDMVSSRGPASSFSQSKRFL---LPSGPFSLPIILLMLAKGHRINSVFPLSC 126
            A   L       +R     F + ++FL   + S   ++  +     K   I      + 
Sbjct: 183 EAKEQLE-----KNRSIDPDFIKKEKFLNSVIISCEAAITYVNRYAKKAKEIADNTSDAK 237

Query: 127 VGPAILQLVYISALTFDFGANENIKYAFFEASTVSGILHASLYL------------DSVI 174
               + ++  I +     GA      +F+EA  +   +HA + +            D  +
Sbjct: 238 RKAELNEIAKICSKVSGEGAK-----SFYEACQLFWFIHAIINIESNGHSISPARFDQYM 292

Query: 175 LPYYTGFDALVSSSFSGECVSCVCRK--EVLVVGGKLVT--YRGWSVTTSLVVGTLCLRI 230
            PYY   D  ++  F+ E + C+  K  ++  V  ++ T  + G+ +  +L+VG      
Sbjct: 293 YPYYEN-DKNITDKFAQELIDCIWIKLNDINKVRDEISTKHFGGYPMYQNLIVGG----- 346

Query: 231 VRRLYEANKAKITAIMSLLESLSFIFIIKDSLYLAT-NSPPEQYLLRAA 278
             +  E   A        LE+   + + + SL +   N  P+++LLRAA
Sbjct: 347 --QNSEGKDATNKVSYMALEAAVHVKLPQPSLSVRIWNKTPDEFLLRAA 393


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.139    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,018,659
Number of Sequences: 62578
Number of extensions: 339230
Number of successful extensions: 827
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 827
Number of HSP's gapped (non-prelim): 3
length of query: 310
length of database: 14,973,337
effective HSP length: 99
effective length of query: 211
effective length of database: 8,778,115
effective search space: 1852182265
effective search space used: 1852182265
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)