BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021577
         (310 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9Y5E2|PCDB7_HUMAN Protocadherin beta-7 OS=Homo sapiens GN=PCDHB7 PE=2 SV=1
          Length = 793

 Score = 32.7 bits (73), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 11/75 (14%)

Query: 134 LVYISALTFDFGANENIKYAF----------FEASTVSGILHASLYLD-SVILPYYTGFD 182
           +V +SA   D G+N  I YAF          F+ +  SG LH    LD   I  Y     
Sbjct: 261 VVSVSARDLDTGSNGEIAYAFSYATERILKTFQINPTSGSLHLKAQLDYEAIQTYTLTIQ 320

Query: 183 ALVSSSFSGECVSCV 197
           A      SG+C   V
Sbjct: 321 AKDGGGLSGKCTVVV 335


>sp|Q5DRC7|PCDB7_PANTR Protocadherin beta-7 OS=Pan troglodytes GN=PCDHB7 PE=3 SV=1
          Length = 793

 Score = 32.7 bits (73), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 11/75 (14%)

Query: 134 LVYISALTFDFGANENIKYAF----------FEASTVSGILHASLYLD-SVILPYYTGFD 182
           +V +SA   D G+N  I YAF          F+ +  SG LH    LD   I  Y     
Sbjct: 261 VVSVSARDLDTGSNGEIAYAFSYATERILKTFQINPTSGNLHLKAQLDYEAIQTYTLTIQ 320

Query: 183 ALVSSSFSGECVSCV 197
           A      SG+C   V
Sbjct: 321 AKDGGGLSGKCTVVV 335


>sp|O60494|CUBN_HUMAN Cubilin OS=Homo sapiens GN=CUBN PE=1 SV=5
          Length = 3623

 Score = 32.0 bits (71), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 16  EDVRTTFLKCVGWQTE--ETLDPINCPYHYYCDSTYPGNYPPAVDVLVLVYTAVSYLATL 73
           E +R      V W+T+  E    +  PY       YPGNYPP  D + +V T+   L T 
Sbjct: 571 EHLRNGRGFTVRWETQQPECGGILTGPYGSIKSPGYPGNYPPGRDCVWIVVTSPDLLVTF 630

Query: 74  LLMVVDM 80
               + +
Sbjct: 631 TFGTLSL 637


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.325    0.139    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,937,761
Number of Sequences: 539616
Number of extensions: 4263415
Number of successful extensions: 11449
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 11447
Number of HSP's gapped (non-prelim): 8
length of query: 310
length of database: 191,569,459
effective HSP length: 117
effective length of query: 193
effective length of database: 128,434,387
effective search space: 24787836691
effective search space used: 24787836691
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)