Query 021577
Match_columns 310
No_of_seqs 12 out of 14
Neff 2.0
Searched_HMMs 29240
Date Mon Mar 25 06:09:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021577.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021577hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2liy_A Epidermal patterning fa 34.3 19 0.00066 25.7 1.8 28 18-45 13-41 (45)
2 1cix_A Protein (tachystatin A) 20.9 37 0.0013 24.1 1.3 20 33-52 17-36 (44)
3 3tbg_A Cytochrome P450 2D6; mo 20.6 17 0.00059 30.9 -0.5 11 98-108 11-21 (479)
4 2xtt_A Protease inhibitor SGPI 17.1 33 0.0011 23.0 0.3 15 187-201 8-22 (36)
5 2qpz_A Naphthalene 1,2-dioxyge 16.3 30 0.001 25.1 -0.0 11 35-45 59-69 (103)
6 1fqt_A Rieske-type ferredoxin 15.6 32 0.0011 25.5 -0.0 11 35-45 62-72 (112)
7 2i7f_A Ferredoxin component of 15.4 33 0.0011 25.1 0.0 10 35-44 60-69 (108)
8 1vm9_A Toluene-4-monooxygenase 15.3 33 0.0011 25.3 -0.0 11 35-45 59-69 (111)
9 2jo6_A Nitrite reductase [NAD( 14.1 34 0.0011 25.3 -0.3 10 36-45 70-79 (113)
10 3tvj_I Protease inhibitor SGPI 13.7 48 0.0016 22.8 0.4 16 186-201 10-25 (38)
No 1
>2liy_A Epidermal patterning factor-like protein 9; plant peptide hormone, EPFL family, stomatal density, positi regulator, hormone; NMR {Arabidopsis thaliana}
Probab=34.26 E-value=19 Score=25.68 Aligned_cols=28 Identities=46% Similarity=0.742 Sum_probs=21.8
Q ss_pred hhheeeeecceeee-cccCCccCCcceec
Q 021577 18 VRTTFLKCVGWQTE-ETLDPINCPYHYYC 45 (310)
Q Consensus 18 i~~tf~KC~rWQ~E-eT~D~InCPYHYyC 45 (310)
-|--=+||.-=|+. |--||||=-|||-|
T Consensus 13 CrgCr~~C~aeqvPvd~~dP~~SAYhY~C 41 (45)
T 2liy_A 13 CRGCRYKCRAEQVPVEGNDPINSAYHYRC 41 (45)
T ss_dssp GTTCCSEEEEEEEESSCSSSCSCCEEEEE
T ss_pred hcCcccccceeeccccCCCcccchheeEe
Confidence 34445788887875 55699999999998
No 2
>1cix_A Protein (tachystatin A); antimicrobial peptide, chitin-binding peptide; NMR {Tachypleus tridentatus} SCOP: g.3.6.2
Probab=20.86 E-value=37 Score=24.08 Aligned_cols=20 Identities=35% Similarity=0.673 Sum_probs=17.6
Q ss_pred ccCCccCCcceecCCCCCCC
Q 021577 33 TLDPINCPYHYYCDSTYPGN 52 (310)
Q Consensus 33 T~D~InCPYHYyCDs~YPgn 52 (310)
-+..|.|=+-|+|.|-+||.
T Consensus 17 glpt~~cc~g~~cr~~fpgs 36 (44)
T 1cix_A 17 GLPTIPCCRGLTCRSYFPGS 36 (44)
T ss_dssp TSCSCCCCTTCEEEESSTTC
T ss_pred CCCCcceecceEEcccCCCc
Confidence 35679999999999999996
No 3
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=20.65 E-value=17 Score=30.94 Aligned_cols=11 Identities=55% Similarity=1.165 Sum_probs=10.1
Q ss_pred ccCCCchHHHH
Q 021577 98 LPSGPFSLPII 108 (310)
Q Consensus 98 lPSGP~sLPli 108 (310)
||-||.++|+|
T Consensus 11 LPPGP~~lP~i 21 (479)
T 3tbg_A 11 LPPGPLPLPGL 21 (479)
T ss_dssp CCCCSCCBTTT
T ss_pred CCCCCCCcCcc
Confidence 89999999986
No 4
>2xtt_A Protease inhibitor SGPI-1; hydrolase, catalytic mechanism, inhibition, in vitro evoluti; 0.93A {Schistocerca gregaria} PDB: 1kj0_A 2f91_B 2vu8_I 1kio_A
Probab=17.08 E-value=33 Score=22.98 Aligned_cols=15 Identities=20% Similarity=0.751 Sum_probs=12.8
Q ss_pred ccccccccceeeecc
Q 021577 187 SSFSGECVSCVCRKE 201 (310)
Q Consensus 187 StFSGEC~sCvCRkE 201 (310)
+++..+|-+|.|+.+
T Consensus 8 ~~~~~dCNtC~C~~~ 22 (36)
T 2xtt_A 8 QTKKQDCNTCRCGSD 22 (36)
T ss_dssp CEEEETTEEEEECTT
T ss_pred CEEECCCCccCCCCC
Confidence 688899999999943
No 5
>2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida}
Probab=16.34 E-value=30 Score=25.10 Aligned_cols=11 Identities=36% Similarity=0.646 Sum_probs=8.8
Q ss_pred CCccCCcceec
Q 021577 35 DPINCPYHYYC 45 (310)
Q Consensus 35 D~InCPYHYyC 45 (310)
+.|.||||-..
T Consensus 59 ~~i~Cp~Hg~~ 69 (103)
T 2qpz_A 59 REIECPLHQGR 69 (103)
T ss_dssp TEEECTTTTCE
T ss_pred CEEECCCCCCE
Confidence 57999999754
No 6
>1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B*
Probab=15.58 E-value=32 Score=25.47 Aligned_cols=11 Identities=27% Similarity=0.540 Sum_probs=8.6
Q ss_pred CCccCCcceec
Q 021577 35 DPINCPYHYYC 45 (310)
Q Consensus 35 D~InCPYHYyC 45 (310)
+.|.||||-..
T Consensus 62 ~~i~CP~Hg~~ 72 (112)
T 1fqt_A 62 DVVECSLHMGK 72 (112)
T ss_dssp TEEECTTTCCE
T ss_pred CEEECCCCCCE
Confidence 56999999753
No 7
>2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae}
Probab=15.36 E-value=33 Score=25.14 Aligned_cols=10 Identities=40% Similarity=0.816 Sum_probs=8.3
Q ss_pred CCccCCccee
Q 021577 35 DPINCPYHYY 44 (310)
Q Consensus 35 D~InCPYHYy 44 (310)
+.|.||||..
T Consensus 60 ~~i~Cp~Hg~ 69 (108)
T 2i7f_A 60 TIIECPFHGG 69 (108)
T ss_dssp TEEECSSTTC
T ss_pred CEEEcCCCCC
Confidence 5799999964
No 8
>1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A
Probab=15.34 E-value=33 Score=25.30 Aligned_cols=11 Identities=27% Similarity=0.631 Sum_probs=8.8
Q ss_pred CCccCCcceec
Q 021577 35 DPINCPYHYYC 45 (310)
Q Consensus 35 D~InCPYHYyC 45 (310)
+.|.||||...
T Consensus 59 ~~i~Cp~Hg~~ 69 (111)
T 1vm9_A 59 GVITCRAHLWT 69 (111)
T ss_dssp TEEECTTTCCE
T ss_pred CEEEcCCCCCE
Confidence 57999999754
No 9
>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3
Probab=14.07 E-value=34 Score=25.31 Aligned_cols=10 Identities=10% Similarity=0.006 Sum_probs=8.2
Q ss_pred CccCCcceec
Q 021577 36 PINCPYHYYC 45 (310)
Q Consensus 36 ~InCPYHYyC 45 (310)
.|.||||-..
T Consensus 70 ~i~CP~Hg~~ 79 (113)
T 2jo6_A 70 WVASPLKKQR 79 (113)
T ss_dssp EEEETTTTEE
T ss_pred EEECCCCCCE
Confidence 6999999754
No 10
>3tvj_I Protease inhibitor SGPI-2; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Schistocerca gregaria} PDB: 4djz_H 1kgm_A 1gl1_I 1pmc_A
Probab=13.75 E-value=48 Score=22.84 Aligned_cols=16 Identities=25% Similarity=0.945 Sum_probs=14.0
Q ss_pred hccccccccceeeecc
Q 021577 186 SSSFSGECVSCVCRKE 201 (310)
Q Consensus 186 sStFSGEC~sCvCRkE 201 (310)
.++|--.|-+|.|..|
T Consensus 10 g~tFk~~CNtC~C~~d 25 (38)
T 3tvj_I 10 GTTFKDKCNTCRCGSD 25 (38)
T ss_dssp TCEEEETTEEEEECTT
T ss_pred CCeeeccCceeECCCC
Confidence 3789999999999976
Done!