Query 021580
Match_columns 310
No_of_seqs 178 out of 347
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 04:06:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021580.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021580hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13668 Ferritin_2: Ferritin- 100.0 7.7E-33 1.7E-37 232.3 13.4 134 39-207 1-137 (137)
2 cd01045 Ferritin_like_AB Uncha 98.4 2.8E-06 6E-11 68.9 10.2 134 42-204 1-138 (139)
3 cd00657 Ferritin_like Ferritin 98.4 9.7E-06 2.1E-10 62.6 11.9 128 42-205 1-130 (130)
4 PF02915 Rubrerythrin: Rubrery 97.6 0.00047 1E-08 55.9 8.8 127 42-204 1-136 (137)
5 cd01048 Ferritin_like_AB2 Unch 97.4 0.0013 2.7E-08 56.2 10.0 125 41-198 2-128 (135)
6 COG1633 Uncharacterized conser 96.6 0.045 9.7E-07 49.2 12.5 142 38-208 23-169 (176)
7 PRK13456 DNA protection protei 96.4 0.031 6.6E-07 51.0 10.1 140 41-209 22-166 (186)
8 cd07908 Mn_catalase_like Manga 96.4 0.021 4.6E-07 48.9 8.8 105 90-205 46-154 (154)
9 PRK12775 putative trifunctiona 96.3 0.06 1.3E-06 59.7 13.6 142 37-211 858-1001(1006)
10 cd01044 Ferritin_CCC1_N Ferrit 95.5 0.45 9.7E-06 39.6 12.4 121 43-206 2-124 (125)
11 cd01052 DPSL DPS-like protein, 95.1 0.72 1.6E-05 38.6 12.7 138 41-205 8-148 (148)
12 PF13668 Ferritin_2: Ferritin- 94.9 0.25 5.5E-06 41.3 9.3 56 38-117 81-136 (137)
13 cd00907 Bacterioferritin Bacte 94.6 1.1 2.5E-05 37.6 12.8 130 41-208 7-140 (153)
14 cd07908 Mn_catalase_like Manga 92.6 0.55 1.2E-05 40.2 7.4 56 37-116 99-154 (154)
15 cd01045 Ferritin_like_AB Uncha 92.5 0.52 1.1E-05 37.8 6.8 55 36-114 83-137 (139)
16 cd01051 Mn_catalase Manganese 91.9 1.7 3.8E-05 38.2 9.9 98 90-207 52-154 (156)
17 PRK10635 bacterioferritin; Pro 91.7 7.1 0.00015 34.4 13.5 130 40-209 7-142 (158)
18 cd00657 Ferritin_like Ferritin 86.5 12 0.00025 28.3 9.8 56 36-115 74-129 (130)
19 TIGR02284 conserved hypothetic 85.7 19 0.00042 30.9 11.7 135 41-204 2-138 (139)
20 PF02915 Rubrerythrin: Rubrery 85.6 2.5 5.5E-05 33.9 5.9 53 39-115 84-136 (137)
21 cd01041 Rubrerythrin Rubreryth 81.8 29 0.00063 28.9 12.2 126 40-207 2-132 (134)
22 PF14530 DUF4439: Domain of un 76.0 27 0.00058 30.1 9.2 102 87-206 21-124 (131)
23 cd01041 Rubrerythrin Rubreryth 74.0 24 0.00052 29.4 8.3 59 38-117 72-131 (134)
24 PRK12775 putative trifunctiona 73.7 10 0.00022 42.5 7.6 57 37-117 939-996 (1006)
25 PF09968 DUF2202: Uncharacteri 69.4 87 0.0019 28.2 13.6 149 41-227 2-159 (162)
26 cd01048 Ferritin_like_AB2 Unch 68.9 22 0.00048 30.2 7.0 55 36-113 79-133 (135)
27 PF11272 DUF3072: Protein of u 65.5 16 0.00034 27.6 4.7 39 195-235 18-56 (57)
28 cd01042 DMQH Demethoxyubiquino 65.1 24 0.00052 31.6 6.7 105 90-203 28-136 (165)
29 TIGR00754 bfr bacterioferritin 64.1 93 0.002 26.6 13.2 128 40-207 7-140 (157)
30 cd01051 Mn_catalase Manganese 60.3 1.1E+02 0.0024 26.8 10.0 82 12-117 68-153 (156)
31 PF03232 COQ7: Ubiquinone bios 57.8 21 0.00046 32.1 5.1 33 90-123 31-64 (172)
32 cd01046 Rubrerythrin_like rubr 56.7 1.1E+02 0.0025 25.3 11.5 115 42-207 4-121 (123)
33 cd00907 Bacterioferritin Bacte 56.5 54 0.0012 27.4 7.1 59 38-117 80-138 (153)
34 COG2406 Protein distantly rela 55.6 1.6E+02 0.0035 26.6 10.3 105 93-210 51-164 (172)
35 PRK10635 bacterioferritin; Pro 55.0 54 0.0012 28.8 7.1 60 37-117 80-139 (158)
36 COG1633 Uncharacterized conser 50.5 62 0.0013 29.1 6.8 58 36-117 110-167 (176)
37 PF09537 DUF2383: Domain of un 49.3 81 0.0017 25.2 6.8 103 41-174 3-108 (111)
38 cd01055 Nonheme_Ferritin nonhe 49.0 1.6E+02 0.0035 24.7 12.7 129 41-206 5-137 (156)
39 PRK13654 magnesium-protoporphy 47.9 24 0.00052 35.3 4.1 55 154-208 85-141 (355)
40 PF04305 DUF455: Protein of un 47.4 30 0.00065 33.0 4.6 57 90-148 180-237 (253)
41 cd01046 Rubrerythrin_like rubr 47.0 57 0.0012 27.1 5.7 59 38-117 62-120 (123)
42 cd01047 ACSF Aerobic Cyclase S 46.8 25 0.00053 34.8 3.9 55 154-208 65-121 (323)
43 PF00210 Ferritin: Ferritin-li 45.4 1.6E+02 0.0034 23.5 11.5 132 41-207 1-138 (142)
44 cd01055 Nonheme_Ferritin nonhe 41.6 77 0.0017 26.7 5.8 59 38-117 79-137 (156)
45 TIGR02029 AcsF magnesium-proto 40.9 35 0.00076 33.9 4.0 55 154-208 75-131 (337)
46 CHL00185 ycf59 magnesium-proto 40.5 35 0.00075 34.2 3.9 55 154-208 81-137 (351)
47 PLN02508 magnesium-protoporphy 38.3 33 0.00072 34.3 3.4 54 154-207 81-136 (357)
48 PF03232 COQ7: Ubiquinone bios 35.5 78 0.0017 28.5 5.1 48 162-209 12-60 (172)
49 PF11220 DUF3015: Protein of u 35.4 77 0.0017 27.9 4.9 63 161-229 69-131 (144)
50 PF00210 Ferritin: Ferritin-li 35.3 1.2E+02 0.0027 24.1 5.9 59 38-117 79-137 (142)
51 cd01044 Ferritin_CCC1_N Ferrit 31.6 76 0.0016 26.2 4.1 55 157-211 3-57 (125)
52 PF11553 DUF3231: Protein of u 30.9 3.5E+02 0.0076 23.3 8.7 117 37-194 15-137 (166)
53 PF12902 Ferritin-like: Ferrit 30.9 1.7E+02 0.0036 27.4 6.7 53 44-117 1-53 (227)
54 TIGR00754 bfr bacterioferritin 26.7 3.1E+02 0.0067 23.3 7.2 60 37-117 80-139 (157)
55 COG2941 CAT5 Ubiquinone biosyn 26.1 1.1E+02 0.0025 28.4 4.5 33 90-123 69-102 (204)
56 COG2193 Bfr Bacterioferritin ( 24.8 1.4E+02 0.0031 26.8 4.7 60 37-117 80-139 (157)
57 PF11583 AurF: P-aminobenzoate 23.4 1E+02 0.0022 29.2 3.9 112 89-211 110-230 (304)
58 cd01050 Acyl_ACP_Desat Acyl AC 22.6 7.4E+02 0.016 24.3 10.2 107 92-209 94-206 (297)
59 PF01786 AOX: Alternative oxid 22.0 1E+02 0.0022 28.7 3.5 56 50-111 139-201 (207)
60 COG2193 Bfr Bacterioferritin ( 21.1 6.2E+02 0.013 22.8 10.7 129 39-207 6-140 (157)
61 PRK13456 DNA protection protei 20.6 3.4E+02 0.0074 25.0 6.5 57 40-118 108-164 (186)
62 COG1867 TRM1 N2,N2-dimethylgua 20.6 60 0.0013 33.0 1.8 63 146-209 126-195 (380)
63 PF05974 DUF892: Domain of unk 20.3 2.2E+02 0.0048 24.8 5.1 112 90-205 33-150 (159)
64 cd01052 DPSL DPS-like protein, 20.2 4.9E+02 0.011 21.4 8.3 57 37-115 91-147 (148)
No 1
>PF13668 Ferritin_2: Ferritin-like domain
Probab=100.00 E-value=7.7e-33 Score=232.29 Aligned_cols=134 Identities=34% Similarity=0.615 Sum_probs=124.9
Q ss_pred ChhhHHhhHHHHHHHHHHHHHhhhhCCCCCccchhhhcCCCCCCCcccCCCCHHHHHHHHHHHHhHHHHHHHHHHHhh-c
Q 021580 39 NDKDLIQVALNLEFLETEFFLNGALGRGLDSIEPEMAAGGPPPTGASKANLDHTTYRIIEEFGYQEIGHLSRAIVTTV-G 117 (310)
Q Consensus 39 ~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~~L~~aL-g 117 (310)
+|++||||||+|||+|.+||.+++.+.+.++ . +..+++.+++++++|+.||..|+ ++|++.| |
T Consensus 1 ~D~~iL~~Al~lE~l~~~fY~~~~~~~~~~~-~--------------~~~~~~~~~~~~~~i~~~E~~H~-~~l~~~l~g 64 (137)
T PF13668_consen 1 GDLDILNFALNLEYLEADFYQQAAEGFTLQD-N--------------KAALDPEVRDLFQEIADQEQGHV-DFLQAALEG 64 (137)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCChhh-h--------------hccCCHHHHHHHHHHHHHHHHHH-HHHHHHhcC
Confidence 5999999999999999999999998877653 1 35678999999999999999999 9999999 6
Q ss_pred --CCCCCcccccchhhHHHHHhhhcCCCCCCCCCCCChHHHHHHHhhccchhHhhhcccccccCChhHHHHHHHHHHHhh
Q 021580 118 --GFARPQIDLSRQNFANIFDQAVGYKLTPPFDPYSNTVNYLLASYVIPYVGLVGYVGTIPNLVNCTSRSLVAGLLGVES 195 (310)
Q Consensus 118 --av~rP~iDls~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~v~E~VGvtAY~Gaap~l~~~~~l~aAA~Il~VEA 195 (310)
++++|.+|+ +||||+|+.+||..|+.||++|+++|+|+++.++|+++++++++|++||+
T Consensus 65 ~~~~~~~~~~~-------------------~~~~~~~~~~~L~~A~~~E~~~~~~Y~g~~~~~~~~~~~~~~~~i~~~Ea 125 (137)
T PF13668_consen 65 GRPVPPPAYDF-------------------PFDPFTDDASFLRLAYTLEDVGVSAYKGAAPQIEDPELKALAASIAGVEA 125 (137)
T ss_pred CCCCCCCcccc-------------------ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 778888887 48999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhh
Q 021580 196 GQDAVIRTLLYE 207 (310)
Q Consensus 196 ~Haa~IRtlL~~ 207 (310)
+|++|||++|+|
T Consensus 126 ~H~~~ir~ll~~ 137 (137)
T PF13668_consen 126 RHAAWIRNLLGQ 137 (137)
T ss_pred HHHHHHHHHhcC
Confidence 999999999985
No 2
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=98.40 E-value=2.8e-06 Score=68.86 Aligned_cols=134 Identities=15% Similarity=0.181 Sum_probs=103.4
Q ss_pred hHHhhHHHHHHHHHHHHHhhhhCCCCCccchhhhcCCCCCCCcccCCCCHHHHHHHHHHHHhHHHHHHHHHHHhhcCC--
Q 021580 42 DLIQVALNLEFLETEFFLNGALGRGLDSIEPEMAAGGPPPTGASKANLDHTTYRIIEEFGYQEIGHLSRAIVTTVGGF-- 119 (310)
Q Consensus 42 diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~~L~~aLgav-- 119 (310)
+|||.|+.+|.....||...+... -++.++.++++++.+|..|. +.|...++..
T Consensus 1 ~~l~~a~~~E~~~~~~Y~~~a~~~-----------------------~~~~~~~~~~~la~eE~~H~-~~l~~~~~~~~~ 56 (139)
T cd01045 1 EILALAIKMEEEAAEFYLELAEKA-----------------------KDPELKKLFEELAEEEKEHA-ERLEELYEKLFG 56 (139)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhHC-----------------------CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcc
Confidence 589999999999999999986321 24578999999999999999 9999888722
Q ss_pred -CCCcccccchhhHHHHHhhhcCCCC-CCCCCCCChHHHHHHHhhccchhHhhhcccccccCChhHHHHHHHHHHHhhhh
Q 021580 120 -ARPQIDLSRQNFANIFDQAVGYKLT-PPFDPYSNTVNYLLASYVIPYVGLVGYVGTIPNLVNCTSRSLVAGLLGVESGQ 197 (310)
Q Consensus 120 -~rP~iDls~~~F~~~~~~A~g~~l~-p~FdPy~n~~~FL~~A~v~E~VGvtAY~Gaap~l~~~~~l~aAA~Il~VEA~H 197 (310)
+-|..+.. .+.... .+.+.. ..+.+-.+..+-|..+.-+|..++.-|.-.+..+.++..+.+...|...|.+|
T Consensus 57 ~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~l~~a~~~E~~~~~~Y~~~~~~~~d~~~~~~~~~l~~~E~~H 131 (139)
T cd01045 57 EELPELEPE--DYKEEV---EEEPEFKKALESLMDPLEALRLAIEIEKDAIEFYEELAEKAEDPEVKKLFEELAEEERGH 131 (139)
T ss_pred ccCCcccHH--HHHHHH---hhhhhHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 44544432 111110 010000 01224468888999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 021580 198 DAVIRTL 204 (310)
Q Consensus 198 aa~IRtl 204 (310)
..++|.+
T Consensus 132 ~~~l~~~ 138 (139)
T cd01045 132 LRLLEEL 138 (139)
T ss_pred HHHHHHh
Confidence 9999875
No 3
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=98.36 E-value=9.7e-06 Score=62.61 Aligned_cols=128 Identities=21% Similarity=0.191 Sum_probs=99.5
Q ss_pred hHHhhHHHHHHHHHHHHHhhhhCCCCCccchhhhcCCCCCCCcccCCCCHHHHHHHHHHHHhHHHHHHHHHHHhhc--CC
Q 021580 42 DLIQVALNLEFLETEFFLNGALGRGLDSIEPEMAAGGPPPTGASKANLDHTTYRIIEEFGYQEIGHLSRAIVTTVG--GF 119 (310)
Q Consensus 42 diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~~L~~aLg--av 119 (310)
.+||-++..|+....+|...... +. ++.++.++.+++.+|..|. +.|.+.+. +.
T Consensus 1 ~~L~~~~~~E~~a~~~y~~~~~~----------------------~~-~~~~~~~~~~~a~~E~~H~-~~l~~~~~~~g~ 56 (130)
T cd00657 1 RLLNDALAGEYAAIIAYGQLAAR----------------------AP-DPDLKDELLEIADEERRHA-DALAERLRELGG 56 (130)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH----------------------cC-CHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCC
Confidence 36899999999999999998632 11 5789999999999999999 99998876 22
Q ss_pred CCCcccccchhhHHHHHhhhcCCCCCCCCCCCChHHHHHHHhhccchhHhhhcccccccCChhHHHHHHHHHHHhhhhHH
Q 021580 120 ARPQIDLSRQNFANIFDQAVGYKLTPPFDPYSNTVNYLLASYVIPYVGLVGYVGTIPNLVNCTSRSLVAGLLGVESGQDA 199 (310)
Q Consensus 120 ~rP~iDls~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~v~E~VGvtAY~Gaap~l~~~~~l~aAA~Il~VEA~Haa 199 (310)
. |..... .+. .. . ++..+..+....|..+...|..+...|......+.+++.+.....|...|.+|..
T Consensus 57 ~-~~~~~~--~~~----~~--~---~~~~~~~~~~~~l~~~~~~E~~~~~~y~~~~~~~~d~~~~~~~~~~~~~E~~H~~ 124 (130)
T cd00657 57 T-PPLPPA--HLL----AA--Y---ALPKTSDDPAEALRAALEVEARAIAAYRELIEQADDPELRRLLERILADEQRHAA 124 (130)
T ss_pred C-CCCCHH--HHH----Hh--c---ccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence 2 221111 000 00 1 1223346778899999999999999999999988999999999999999999999
Q ss_pred HHHHHH
Q 021580 200 VIRTLL 205 (310)
Q Consensus 200 ~IRtlL 205 (310)
.++.++
T Consensus 125 ~~~~~~ 130 (130)
T cd00657 125 WFRKLL 130 (130)
T ss_pred HHHhhC
Confidence 988653
No 4
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=97.58 E-value=0.00047 Score=55.90 Aligned_cols=127 Identities=14% Similarity=0.126 Sum_probs=97.8
Q ss_pred hHHhhHHHHHHHHHHHHHhhhhCCCCCccchhhhcCCCCCCCcccCCCCHHHHHHHHHHHHhHHHHHHHHHHHhhc-CCC
Q 021580 42 DLIQVALNLEFLETEFFLNGALGRGLDSIEPEMAAGGPPPTGASKANLDHTTYRIIEEFGYQEIGHLSRAIVTTVG-GFA 120 (310)
Q Consensus 42 diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~~L~~aLg-av~ 120 (310)
++|+.|+..|.-...||...+... . ..+ |.++.++.+++.+|..|. +++.+.+. -.+
T Consensus 1 e~L~~A~~~E~~~~~~Y~~~a~~~---------~----------~~~--p~~~~~f~~lA~~E~~H~-~~~~~l~~~~~~ 58 (137)
T PF02915_consen 1 EILEMAIKMELEAAKFYRELAEKA---------K----------DEG--PELKELFRRLAEEEQEHA-KFLEKLLRKLGP 58 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---------H----------HTT--HHHHHHHHHHHHHHHHHH-HHHHHHHCHCST
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHh---------h----------hcc--cHHHHHHHHHHHHHHHHH-HHHHHHHHhhcc
Confidence 689999999999999999986310 0 111 679999999999999999 99999988 222
Q ss_pred --CCcccccchhhHHHHHhhhcCCCCCCCCC------CCChHHHHHHHhhccchhHhhhcccccccCChhHHHHHHHHHH
Q 021580 121 --RPQIDLSRQNFANIFDQAVGYKLTPPFDP------YSNTVNYLLASYVIPYVGLVGYVGTIPNLVNCTSRSLVAGLLG 192 (310)
Q Consensus 121 --rP~iDls~~~F~~~~~~A~g~~l~p~FdP------y~n~~~FL~~A~v~E~VGvtAY~Gaap~l~~~~~l~aAA~Il~ 192 (310)
.|.+.-. ...+.+.+ -.|....+..+...|.-++.-|.-.+..+.++..++..-.|..
T Consensus 59 ~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~l~~a~~~E~~~~~~Y~~~a~~~~~~~~~~~~~~l~~ 124 (137)
T PF02915_consen 59 GEEPPFLEE--------------KVEYSFFPKLEEETDENLEEALEMAIKEEKDAYEFYAELARKAPDPEIRKLFEELAK 124 (137)
T ss_dssp THHTHCHCC--------------CCCHCCCCTCCSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred ccCcchhhh--------------hhhhhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2321000 00011221 1256778888999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHH
Q 021580 193 VESGQDAVIRTL 204 (310)
Q Consensus 193 VEA~Haa~IRtl 204 (310)
.|.+|...++.+
T Consensus 125 ~E~~H~~~l~~l 136 (137)
T PF02915_consen 125 EEKEHEDLLEKL 136 (137)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998865
No 5
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=97.44 E-value=0.0013 Score=56.21 Aligned_cols=125 Identities=18% Similarity=0.158 Sum_probs=98.0
Q ss_pred hhHHhhHHHHHHHHHHHHHhhhhCCCCCccchhhhcCCCCCCCcccCCCCHHHHHHHHHHHHhHHHHHHHHHHHhhc--C
Q 021580 41 KDLIQVALNLEFLETEFFLNGALGRGLDSIEPEMAAGGPPPTGASKANLDHTTYRIIEEFGYQEIGHLSRAIVTTVG--G 118 (310)
Q Consensus 41 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~~L~~aLg--a 118 (310)
.++|.||+..|++.-+||......+| .++++..|+..|+.|. .+|+..+. .
T Consensus 2 ~~~L~~Ale~Ek~a~~~Y~~~~~k~~--------------------------~~~~F~~la~~E~~H~-~~l~~L~~~~~ 54 (135)
T cd01048 2 IAALLYALEEEKLARDVYLALYEKFG--------------------------GLRPFSNIAESEQRHM-DALKTLLERYG 54 (135)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc--------------------------CcchHHHHHHHHHHHH-HHHHHHHHHcC
Confidence 57999999999999999999874321 3567888999999999 99999998 8
Q ss_pred CCCCcccccchhhHHHHHhhhcCCCCCCCCCCCChHHHHHHHhhccchhHhhhcccccccCChhHHHHHHHHHHHhhhhH
Q 021580 119 FARPQIDLSRQNFANIFDQAVGYKLTPPFDPYSNTVNYLLASYVIPYVGLVGYVGTIPNLVNCTSRSLVAGLLGVESGQD 198 (310)
Q Consensus 119 v~rP~iDls~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~v~E~VGvtAY~Gaap~l~~~~~l~aAA~Il~VEA~Ha 198 (310)
++.|..+...+.|...- .. .+ ......+..+-|..+..+|...+.=|.-++...+|++++.+--.+...|-.|-
T Consensus 55 ~~~p~~~~~~~~f~~~~---~~-~l--~~~~~~s~~~al~~g~~~E~~~i~~ye~~~~~~~d~d~k~v~~~L~~~e~~H~ 128 (135)
T cd01048 55 LPDPVDPFSGGVFTNPQ---YN-QL--VEQGPKSLQDALEVGVLIEELDIADYDRLLERTQNPDIRDVFENLQAASRNHH 128 (135)
T ss_pred CCCCCCccccccccchh---HH-HH--HHhccccHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 88887766554443110 00 00 00123578888999999999999999999999999999999888888888775
No 6
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=96.61 E-value=0.045 Score=49.20 Aligned_cols=142 Identities=16% Similarity=0.152 Sum_probs=103.8
Q ss_pred CChhhHHhhHHHHHHHHHHHHHhhhhCCCCCccchhhhcCCCCCCCcccCCCCHHHHHHHHHHHHhHHHHHHHHHHHhhc
Q 021580 38 ANDKDLIQVALNLEFLETEFFLNGALGRGLDSIEPEMAAGGPPPTGASKANLDHTTYRIIEEFGYQEIGHLSRAIVTTVG 117 (310)
Q Consensus 38 ~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~~L~~aLg 117 (310)
.+-.++|++|+..|.=.-.||.+.+.- --++.++..+.+|+.+|..|. +-+++-+.
T Consensus 23 ~~~~e~L~~Ai~~E~eA~~fY~~lae~-----------------------~~~~~~rk~~~~la~eE~~H~-~~f~~l~~ 78 (176)
T COG1633 23 LSIEELLAIAIRGELEAIKFYEELAER-----------------------IEDEEIRKLFEDLADEEMRHL-RKFEKLLE 78 (176)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHh-----------------------cCCHhHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 467899999999999888999998621 135689999999999999999 99998877
Q ss_pred -CCCCCcccccc--hhhHHHHHhhhcCCCCC--CCCCCCChHHHHHHHhhccchhHhhhcccccccCChhHHHHHHHHHH
Q 021580 118 -GFARPQIDLSR--QNFANIFDQAVGYKLTP--PFDPYSNTVNYLLASYVIPYVGLVGYVGTIPNLVNCTSRSLVAGLLG 192 (310)
Q Consensus 118 -av~rP~iDls~--~~F~~~~~~A~g~~l~p--~FdPy~n~~~FL~~A~v~E~VGvtAY~Gaap~l~~~~~l~aAA~Il~ 192 (310)
-.++|.-.... ..+..+ .....| .++.=.|...=+..|.--|--.+--|...+-.+.|.+.+.+.-.|..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~I~~a~~~E~~t~~~Y~~~~~~~~~~~~~~~~~~~a~ 153 (176)
T COG1633 79 KLTPKEVSSEEEEGEIESEI-----LEYLQPGKEMEKSVSYLEAIEAAMEAEKDTIEFYEELLDELVNEEAKKLFKTIAD 153 (176)
T ss_pred HhcCCccchhhhhcchhhhh-----ccccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34444211111 001100 011111 23333444555666777799999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHhhh
Q 021580 193 VESGQDAVIRTLLYER 208 (310)
Q Consensus 193 VEA~Haa~IRtlL~~~ 208 (310)
.|=+|..+++..+...
T Consensus 154 ~E~~H~~~l~~~~~~~ 169 (176)
T COG1633 154 DEKGHASGLLSLYNRL 169 (176)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999876653
No 7
>PRK13456 DNA protection protein DPS; Provisional
Probab=96.41 E-value=0.031 Score=51.00 Aligned_cols=140 Identities=17% Similarity=0.158 Sum_probs=98.3
Q ss_pred hhHHhhHHHHHHHHHHHHHhhhhCCCCCccchhhhcCCCCCCCcccCCCCHHHHHHHHHHHHhHHHHHHHHHHHhh---c
Q 021580 41 KDLIQVALNLEFLETEFFLNGALGRGLDSIEPEMAAGGPPPTGASKANLDHTTYRIIEEFGYQEIGHLSRAIVTTV---G 117 (310)
Q Consensus 41 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~~L~~aL---g 117 (310)
+++||=||.-||+-.=.|..... ...|+ ..+.+...+++-+.+|..|. +.|-.-| |
T Consensus 22 i~lLn~AlA~E~~a~~~Y~~~a~-----------~~~G~---------~~e~V~e~le~a~~EEl~HA-~~lAeRI~qLG 80 (186)
T PRK13456 22 VELLVKNAAAEFTTYYYYTILRA-----------HLIGL---------EGEGLKEIAEDARLEDRNHF-EALVPRIYELG 80 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------HHhCc---------CcHHHHHHHHHHHHHHHHHH-HHHHHHHHHhC
Confidence 78999999999988766666542 11111 24678899999999999999 9988654 4
Q ss_pred CCCCCcccccchhhHHHHHhhhcCCCCCCCCCCCChHHHHHHHhhccchhHhhhcccccccC--ChhHHHHHHHHHHHhh
Q 021580 118 GFARPQIDLSRQNFANIFDQAVGYKLTPPFDPYSNTVNYLLASYVIPYVGLVGYVGTIPNLV--NCTSRSLVAGLLGVES 195 (310)
Q Consensus 118 av~rP~iDls~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~v~E~VGvtAY~Gaap~l~--~~~~l~aAA~Il~VEA 195 (310)
+.| ..|. ..|-.+... ++ +.+|=|| +|...+|...-.=|...+..|.=....+. |+....++-.||+.|-
T Consensus 81 G~P--~~~p--~~~~~ls~~--~~-~~~p~d~-tdv~~mL~~~L~AEr~AI~~Y~eii~~~~~kDp~T~~l~~~IL~dE~ 152 (186)
T PRK13456 81 GKL--PRDI--REFHDISAC--PD-AYLPENP-TDPKEILKVLLEAERCAIRTYTEICDMTAGKDPRTYDLALAILQEEI 152 (186)
T ss_pred CCC--CCCh--HHHhhhhcC--cc-ccCCCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 443 2221 123222111 11 0112222 46788999998899999999997777665 4557889999999999
Q ss_pred hhHHHHHHHHhhhh
Q 021580 196 GQDAVIRTLLYERA 209 (310)
Q Consensus 196 ~Haa~IRtlL~~~~ 209 (310)
.|..++..+|..+.
T Consensus 153 eH~~dl~~lL~~~~ 166 (186)
T PRK13456 153 EHEAWFSELLGGGP 166 (186)
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999998643
No 8
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=96.40 E-value=0.021 Score=48.89 Aligned_cols=105 Identities=14% Similarity=0.068 Sum_probs=80.0
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHHHHhhc---CCCCCcccccchhhHHHHHhhhcCCCCC-CCCCCCChHHHHHHHhhccc
Q 021580 90 DHTTYRIIEEFGYQEIGHLSRAIVTTVG---GFARPQIDLSRQNFANIFDQAVGYKLTP-PFDPYSNTVNYLLASYVIPY 165 (310)
Q Consensus 90 ~~~v~~~~~eia~~E~~HV~~~L~~aLg---av~rP~iDls~~~F~~~~~~A~g~~l~p-~FdPy~n~~~FL~~A~v~E~ 165 (310)
++.+++.+.+++.+|..|. +.|...++ +.|...- .....| .++.+ .+.+-.|....|..+..+|.
T Consensus 46 ~~~~k~~f~~lA~eE~~H~-~~l~~~i~~lgg~p~~~~-~~~~~~---------~~~~~~~~~~~~~~~~~L~~~~~~E~ 114 (154)
T cd07908 46 YPEIAETFLGIAIVEMHHL-EILGQLIVLLGGDPRYRS-SSSDKF---------TYWTGKYVNYGESIKEMLKLDIASEK 114 (154)
T ss_pred CHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCCcchh-hccccC---------CcCCccccCCccCHHHHHHHHHHHHH
Confidence 5789999999999999999 99998865 4343111 110011 11111 12223467889999999999
Q ss_pred hhHhhhcccccccCChhHHHHHHHHHHHhhhhHHHHHHHH
Q 021580 166 VGLVGYVGTIPNLVNCTSRSLVAGLLGVESGQDAVIRTLL 205 (310)
Q Consensus 166 VGvtAY~Gaap~l~~~~~l~aAA~Il~VEA~Haa~IRtlL 205 (310)
-++.-|..++..+.|++.+.+.-.|+.-|-.|..++..+|
T Consensus 115 ~ai~~Y~~~~~~~~d~~~r~ll~~I~~eE~~H~~~L~~~l 154 (154)
T cd07908 115 AAIAKYKRQAETIKDPYIRALLNRIILDEKLHIKILEELL 154 (154)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999987654
No 9
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.30 E-value=0.06 Score=59.72 Aligned_cols=142 Identities=13% Similarity=0.108 Sum_probs=109.1
Q ss_pred CCChhhHHhhHHHHHHHHHHHHHhhhhCCCCCccchhhhcCCCCCCCcccCCCCHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 021580 37 EANDKDLIQVALNLEFLETEFFLNGALGRGLDSIEPEMAAGGPPPTGASKANLDHTTYRIIEEFGYQEIGHLSRAIVTTV 116 (310)
Q Consensus 37 ~~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~~L~~aL 116 (310)
..++.|||.+|+.+|==--+||...+.. + -++.+++++.++|..|..|. +.|++.+
T Consensus 858 ~~~~~eil~~Ai~mE~~g~~FY~~~A~~----------------------a-~~~~~K~lF~~LA~eE~~H~-~~l~~~~ 913 (1006)
T PRK12775 858 DAAALEAIRTAFEIELGGMAFYARAAKE----------------------T-SDPVLKELFLKFAGMEQEHM-ATLARRY 913 (1006)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHH----------------------c-CCHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 4678999999999999888999998732 1 36789999999999999999 9998877
Q ss_pred c-CCCCCcccccchhhHHHHHhhhcCCCCCCCCCCCChHHHHHHHhhccchhHhhhcccccccCChh-HHHHHHHHHHHh
Q 021580 117 G-GFARPQIDLSRQNFANIFDQAVGYKLTPPFDPYSNTVNYLLASYVIPYVGLVGYVGTIPNLVNCT-SRSLVAGLLGVE 194 (310)
Q Consensus 117 g-av~rP~iDls~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~v~E~VGvtAY~Gaap~l~~~~-~l~aAA~Il~VE 194 (310)
. ..+.+.-|+. .+ +...-..+ +++..++.+.|..|.-+|.=.+.=|..++-...+++ .+++.-.|..-|
T Consensus 914 ~~~~~~~~~~~~--~~----~~~~~~~~---~~~~~~~~~al~lAm~~Ekdai~fY~~la~~~~d~e~~k~l~~~LA~EE 984 (1006)
T PRK12775 914 HAAAPSPTEGFK--IE----RAAIMAGV---KGRPDDPGNLFRIAIEFERRAVKFFKERVAETPDGSVERQLYKELAAEE 984 (1006)
T ss_pred hhccCCcccccc--cc----hhhhhhhh---ccccCCHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHH
Confidence 6 3333222221 00 00000011 123456788999999999999999999999999986 699999999999
Q ss_pred hhhHHHHHHHHhhhhhc
Q 021580 195 SGQDAVIRTLLYERADQ 211 (310)
Q Consensus 195 A~Haa~IRtlL~~~~~~ 211 (310)
-.|-..+..++.+.+.-
T Consensus 985 k~Hl~~L~~~~d~~~~~ 1001 (1006)
T PRK12775 985 REHVALLTTEFERWKQG 1001 (1006)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999988876643
No 10
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=95.46 E-value=0.45 Score=39.62 Aligned_cols=121 Identities=16% Similarity=0.122 Sum_probs=84.1
Q ss_pred HHhhHHHHHHHHHHHHHhhhhCCCCCccchhhhcCCCCCCCcccCCCCHHHHHHHHHHHHhHHHHHHHHHHHhhc--CCC
Q 021580 43 LIQVALNLEFLETEFFLNGALGRGLDSIEPEMAAGGPPPTGASKANLDHTTYRIIEEFGYQEIGHLSRAIVTTVG--GFA 120 (310)
Q Consensus 43 iLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~~L~~aLg--av~ 120 (310)
.+|=.+.-|.-...||...+.- --++.++.++.+++.+|..|. +++++.++ +.+
T Consensus 2 ~~~~~~~~E~~~~~~Y~~la~~-----------------------~~~~~~k~~f~~lA~~E~~H~-~~~~~~~~~~~~~ 57 (125)
T cd01044 2 RLRKFQKDEITEAAIYRKLAKR-----------------------EKDPENREILLKLAEDERRHA-EFWKKFLGKRGVP 57 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------------------cCCHHHHHHHHHHHHHHHHHH-HHHHHHHhhccCC
Confidence 4667788999999999998621 125679999999999999999 99999988 333
Q ss_pred CCcccccchhhHHHHHhhhcCCCCCCCCCCCChHHHHHHHhhccchhHhhhcccccccCChhHHHHHHHHHHHhhhhHHH
Q 021580 121 RPQIDLSRQNFANIFDQAVGYKLTPPFDPYSNTVNYLLASYVIPYVGLVGYVGTIPNLVNCTSRSLVAGLLGVESGQDAV 200 (310)
Q Consensus 121 rP~iDls~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~v~E~VGvtAY~Gaap~l~~~~~l~aAA~Il~VEA~Haa~ 200 (310)
.|.=++. ..|-......+ +....+..+.-.|.-++.-|...... +...-.|..-|-.|-..
T Consensus 58 ~~~~~~~-~~~~~~l~~~~------------g~~~~l~~~~~~E~~ai~~Y~~~~~~------~~~~~~Ii~dE~~H~~~ 118 (125)
T cd01044 58 PPRPKLK-IFFYKLLARIF------------GPTFVLKLLERGEERAIEKYDRLLEE------RPELKEIIADELEHEEV 118 (125)
T ss_pred CCCccHH-HHHHHHHHHHH------------hHHHHHHHHHHhHHhhHhhHHhhhhh------hHHHHHHHHHHHHHHHH
Confidence 2200111 01111111111 22345666667898899999887655 55667899999999999
Q ss_pred HHHHHh
Q 021580 201 IRTLLY 206 (310)
Q Consensus 201 IRtlL~ 206 (310)
++.++.
T Consensus 119 L~~~~~ 124 (125)
T cd01044 119 LIALLD 124 (125)
T ss_pred HHHhhh
Confidence 887763
No 11
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=95.10 E-value=0.72 Score=38.63 Aligned_cols=138 Identities=16% Similarity=0.112 Sum_probs=94.1
Q ss_pred hhHHhhHHHHHHHHHHHHHhhhhCCCCCccchhhhcCCCCCCCcccCCCCHHHHHHHHHHHHhHHHHHHHHHHHhhc-CC
Q 021580 41 KDLIQVALNLEFLETEFFLNGALGRGLDSIEPEMAAGGPPPTGASKANLDHTTYRIIEEFGYQEIGHLSRAIVTTVG-GF 119 (310)
Q Consensus 41 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~~L~~aLg-av 119 (310)
++.||-+|+.|+.-...|..-..- + .| .++ ..+...+++++.+|..|+ +.|-.-+- =-
T Consensus 8 ~~~Ln~~la~e~~~~~~y~~~~~~---------~--~g--------~~f-~~l~~~~~~~~~ee~~Ha-d~laEri~~lG 66 (148)
T cd01052 8 IELLNKAFADEWLAYYYYTILAKH---------V--KG--------PEG-EGIKEELEEAAEEELNHA-ELLAERIYELG 66 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------H--cC--------Cch-HHHHHHHHHHHHHHHHHH-HHHHHHHHHhC
Confidence 467999999999887777664320 0 01 111 468999999999999999 77765543 11
Q ss_pred CCCcccccchhhHHHHHhhhcCCCCCCCCCCCChHHHHHHHhhccchhHhhhccccccc--CChhHHHHHHHHHHHhhhh
Q 021580 120 ARPQIDLSRQNFANIFDQAVGYKLTPPFDPYSNTVNYLLASYVIPYVGLVGYVGTIPNL--VNCTSRSLVAGLLGVESGQ 197 (310)
Q Consensus 120 ~rP~iDls~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~v~E~VGvtAY~Gaap~l--~~~~~l~aAA~Il~VEA~H 197 (310)
.+|..... .|... .++.+..+-.-..+....+-...--|...+..|....... .|.......-.|+.-|-.|
T Consensus 67 g~p~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~~~~~~~a~~~D~~t~~ll~~~l~de~~h 140 (148)
T cd01052 67 GTPPRDPK--DWYEI----SGCKCGYLPPDPPDVKGILKVNLKAERCAIKVYKELCDMTHGKDPVTYDLALAILNEEIEH 140 (148)
T ss_pred CCCCCChH--HHHHH----hcccccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 22443321 22211 1111111111235778899999999999999999888765 5666788889999999999
Q ss_pred HHHHHHHH
Q 021580 198 DAVIRTLL 205 (310)
Q Consensus 198 aa~IRtlL 205 (310)
..|++++|
T Consensus 141 ~~~~~~~~ 148 (148)
T cd01052 141 EEDLEELL 148 (148)
T ss_pred HHHHHhhC
Confidence 99999875
No 12
>PF13668 Ferritin_2: Ferritin-like domain
Probab=94.87 E-value=0.25 Score=41.30 Aligned_cols=56 Identities=18% Similarity=0.167 Sum_probs=48.7
Q ss_pred CChhhHHhhHHHHHHHHHHHHHhhhhCCCCCccchhhhcCCCCCCCcccCCCCHHHHHHHHHHHHhHHHHHHHHHHHhhc
Q 021580 38 ANDKDLIQVALNLEFLETEFFLNGALGRGLDSIEPEMAAGGPPPTGASKANLDHTTYRIIEEFGYQEIGHLSRAIVTTVG 117 (310)
Q Consensus 38 ~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~~L~~aLg 117 (310)
.+|.++|.+|+.+|..-..+|..++.- --++.++..+..|+..|..|. ..||..|+
T Consensus 81 ~~~~~~L~~A~~~E~~~~~~Y~g~~~~-----------------------~~~~~~~~~~~~i~~~Ea~H~-~~ir~ll~ 136 (137)
T PF13668_consen 81 TDDASFLRLAYTLEDVGVSAYKGAAPQ-----------------------IEDPELKALAASIAGVEARHA-AWIRNLLG 136 (137)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------cCCHHHHHHHHHHHHHHHHHH-HHHHHHhc
Confidence 478999999999999999999988621 016789999999999999999 99998875
No 13
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=94.60 E-value=1.1 Score=37.61 Aligned_cols=130 Identities=14% Similarity=0.086 Sum_probs=92.3
Q ss_pred hhHHhhHHHHHHHHHHHHHhhhhCCCCCccchhhhcCCCCCCCcccCCCCHHHHHHHHHHHHhHHHHHHHHHHHhhc-CC
Q 021580 41 KDLIQVALNLEFLETEFFLNGALGRGLDSIEPEMAAGGPPPTGASKANLDHTTYRIIEEFGYQEIGHLSRAIVTTVG-GF 119 (310)
Q Consensus 41 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~~L~~aLg-av 119 (310)
++.||-+++.||--...|..-..-. + + .++ +.+...+.+++.+|..|. +.|-.-+. --
T Consensus 7 ~~~Ln~~l~~E~~a~~~Y~~~a~~~--~---------~--------~~~-~~~~~~f~~~a~ee~~Ha-~~lae~i~~lG 65 (153)
T cd00907 7 IEALNKALTGELTAINQYFLHARML--E---------D--------WGL-EKLAERFRKESIEEMKHA-DKLIERILFLE 65 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--H---------c--------CCh-HHHHHHHHHHHHHHHHHH-HHHHHHHHHcC
Confidence 5789999999999888888543210 0 0 111 467899999999999999 77666553 11
Q ss_pred CCCcccccchhhHHHHHhhhcCCCCCCCCCCCChHHHHHHHhhccchhHhhhccccc---ccCChhHHHHHHHHHHHhhh
Q 021580 120 ARPQIDLSRQNFANIFDQAVGYKLTPPFDPYSNTVNYLLASYVIPYVGLVGYVGTIP---NLVNCTSRSLVAGLLGVESG 196 (310)
Q Consensus 120 ~rP~iDls~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~v~E~VGvtAY~Gaap---~l~~~~~l~aAA~Il~VEA~ 196 (310)
.+|.+... .++ ....+....|..+.--|.--+..|.-... ...++......-.|+..|-.
T Consensus 66 g~p~~~~~----------------~~~-~~~~~~~~~l~~~l~~E~~~~~~y~~~~~~A~~~~D~~t~~~l~~~~~~e~~ 128 (153)
T cd00907 66 GLPNLQRL----------------GKL-RIGEDVPEMLENDLALEYEAIAALNEAIALCEEVGDYVSRDLLEEILEDEEE 128 (153)
T ss_pred CCCCCCcC----------------CCC-CcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 23332110 011 11236777888888888888999998754 35788889999999999999
Q ss_pred hHHHHHHHHhhh
Q 021580 197 QDAVIRTLLYER 208 (310)
Q Consensus 197 Haa~IRtlL~~~ 208 (310)
|..+++.++..-
T Consensus 129 h~~~l~~~l~~~ 140 (153)
T cd00907 129 HIDWLETQLDLI 140 (153)
T ss_pred HHHHHHHHHHHH
Confidence 999999988753
No 14
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=92.56 E-value=0.55 Score=40.17 Aligned_cols=56 Identities=11% Similarity=0.088 Sum_probs=47.0
Q ss_pred CCChhhHHhhHHHHHHHHHHHHHhhhhCCCCCccchhhhcCCCCCCCcccCCCCHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 021580 37 EANDKDLIQVALNLEFLETEFFLNGALGRGLDSIEPEMAAGGPPPTGASKANLDHTTYRIIEEFGYQEIGHLSRAIVTTV 116 (310)
Q Consensus 37 ~~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~~L~~aL 116 (310)
..+..++|.+++.+|.=--+||...+.- --|+.+++++++|..+|..|. +.|++.|
T Consensus 99 ~~~~~~~L~~~~~~E~~ai~~Y~~~~~~-----------------------~~d~~~r~ll~~I~~eE~~H~-~~L~~~l 154 (154)
T cd07908 99 GESIKEMLKLDIASEKAAIAKYKRQAET-----------------------IKDPYIRALLNRIILDEKLHI-KILEELL 154 (154)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------cCCHHHHHHHHHHHHHHHHHH-HHHHhhC
Confidence 3467889999999999888999998631 136889999999999999999 9887653
No 15
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=92.48 E-value=0.52 Score=37.84 Aligned_cols=55 Identities=24% Similarity=0.303 Sum_probs=47.1
Q ss_pred CCCChhhHHhhHHHHHHHHHHHHHhhhhCCCCCccchhhhcCCCCCCCcccCCCCHHHHHHHHHHHHhHHHHHHHHHHH
Q 021580 36 IEANDKDLIQVALNLEFLETEFFLNGALGRGLDSIEPEMAAGGPPPTGASKANLDHTTYRIIEEFGYQEIGHLSRAIVT 114 (310)
Q Consensus 36 ~~~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~~L~~ 114 (310)
...++.++|..|+..|---.+||...+.. ..++.++.++++|..+|..|. +.|+.
T Consensus 83 ~~~~~~~~l~~a~~~E~~~~~~Y~~~~~~-----------------------~~d~~~~~~~~~l~~~E~~H~-~~l~~ 137 (139)
T cd01045 83 SLMDPLEALRLAIEIEKDAIEFYEELAEK-----------------------AEDPEVKKLFEELAEEERGHL-RLLEE 137 (139)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------cCCHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 45678999999999999888999998631 136789999999999999999 88875
No 16
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=91.94 E-value=1.7 Score=38.20 Aligned_cols=98 Identities=15% Similarity=0.110 Sum_probs=79.5
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHHHHhhc---C--CCCCcccccchhhHHHHHhhhcCCCCCCCCCCCChHHHHHHHhhcc
Q 021580 90 DHTTYRIIEEFGYQEIGHLSRAIVTTVG---G--FARPQIDLSRQNFANIFDQAVGYKLTPPFDPYSNTVNYLLASYVIP 164 (310)
Q Consensus 90 ~~~v~~~~~eia~~E~~HV~~~L~~aLg---a--v~rP~iDls~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~v~E 164 (310)
++.+++.+.+|+.+|..|+ ..|-..+. + ...|- ++ +..++-.|...-|......|
T Consensus 52 ~~~~~d~l~~ia~eEm~H~-e~la~~I~~Lg~~~~g~pw---~~----------------~yv~~~~d~~~~L~~ni~aE 111 (156)
T cd01051 52 DPKYRDLLLDIGTEELSHL-EMVATLIAMLLKDSQGVPW---TA----------------AYIQSSGNLVADLRSNIAAE 111 (156)
T ss_pred CHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCCCCcC---CC----------------cccCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999 99887764 2 11221 11 01334467777888888889
Q ss_pred chhHhhhcccccccCChhHHHHHHHHHHHhhhhHHHHHHHHhh
Q 021580 165 YVGLVGYVGTIPNLVNCTSRSLVAGLLGVESGQDAVIRTLLYE 207 (310)
Q Consensus 165 ~VGvtAY~Gaap~l~~~~~l~aAA~Il~VEA~Haa~IRtlL~~ 207 (310)
.-+..-|.=.+..++|+..+...--|+.-|-.|.-.++.+|.+
T Consensus 112 ~~Ai~~Y~~l~~~~~Dp~v~~~l~~I~~rE~~H~~~f~~~l~~ 154 (156)
T cd01051 112 SRARLTYERLYEMTDDPGVKDTLSFLLVREIVHQNAFGKALES 154 (156)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999888764
No 17
>PRK10635 bacterioferritin; Provisional
Probab=91.67 E-value=7.1 Score=34.39 Aligned_cols=130 Identities=15% Similarity=0.161 Sum_probs=90.2
Q ss_pred hhhHHhhHHHHHHHHHHHH-HhhhhCCCCCccchhhhcCCCCCCCcccCCCCHHHHHHHHHHHHhHHHHHHHHHHHhh--
Q 021580 40 DKDLIQVALNLEFLETEFF-LNGALGRGLDSIEPEMAAGGPPPTGASKANLDHTTYRIIEEFGYQEIGHLSRAIVTTV-- 116 (310)
Q Consensus 40 D~diLNFALnLEyLEa~FY-~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~~L~~aL-- 116 (310)
=++.||=+|+.|+.-..=| .++.. +...| ++.. ......-+.+|..|..++++.-+
T Consensus 7 vi~~LN~~L~~El~Ai~QY~~ha~~----------~~~~G----------~~~l-a~~~~~ea~eEm~HA~~l~eRIl~L 65 (158)
T PRK10635 7 IINYLNKLLGNELVAINQYFLHARM----------FKNWG----------LMRL-NDVEYHESIDEMKHADKYIERILFL 65 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------HHcCC----------cHHH-HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3688999999999888444 44432 11111 2222 22333338899999944444443
Q ss_pred cCCCCCcccccchhhHHHHHhhhcCCCCCCCCCCCChHHHHHHHhhccchhHhhhcccccc---cCChhHHHHHHHHHHH
Q 021580 117 GGFARPQIDLSRQNFANIFDQAVGYKLTPPFDPYSNTVNYLLASYVIPYVGLVGYVGTIPN---LVNCTSRSLVAGLLGV 193 (310)
Q Consensus 117 gav~rP~iDls~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~v~E~VGvtAY~Gaap~---l~~~~~l~aAA~Il~V 193 (310)
|+.| .++- + ++..+-.|....|......|.-.+.-|.=++.. ..++..+.+...|+.-
T Consensus 66 gG~P--~~~~----------------~-~~~~~g~~v~eml~~dl~~E~~ai~~y~e~i~~a~~~~D~~s~~ll~~iL~d 126 (158)
T PRK10635 66 EGIP--NLQD----------------L-GKLNIGEDVEEMLRSDLRLELEGAKDLREAIAYADSVHDYVSRDMMIEILAD 126 (158)
T ss_pred CCCC--CCCC----------------C-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444 2211 1 123334689999999999999999999988886 5678889999999999
Q ss_pred hhhhHHHHHHHHhhhh
Q 021580 194 ESGQDAVIRTLLYERA 209 (310)
Q Consensus 194 EA~Haa~IRtlL~~~~ 209 (310)
|-.|.-|+.+.|....
T Consensus 127 Ee~H~~~le~~l~~i~ 142 (158)
T PRK10635 127 EEGHIDWLETELDLIG 142 (158)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999888644
No 18
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=86.52 E-value=12 Score=28.33 Aligned_cols=56 Identities=16% Similarity=0.085 Sum_probs=45.9
Q ss_pred CCCChhhHHhhHHHHHHHHHHHHHhhhhCCCCCccchhhhcCCCCCCCcccCCCCHHHHHHHHHHHHhHHHHHHHHHHHh
Q 021580 36 IEANDKDLIQVALNLEFLETEFFLNGALGRGLDSIEPEMAAGGPPPTGASKANLDHTTYRIIEEFGYQEIGHLSRAIVTT 115 (310)
Q Consensus 36 ~~~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~~L~~a 115 (310)
...++.++|..+...|--...+|...... + -++.+++++..+..+|..|+ +.++..
T Consensus 74 ~~~~~~~~l~~~~~~E~~~~~~y~~~~~~----------------------~-~d~~~~~~~~~~~~~E~~H~-~~~~~~ 129 (130)
T cd00657 74 TSDDPAEALRAALEVEARAIAAYRELIEQ----------------------A-DDPELRRLLERILADEQRHA-AWFRKL 129 (130)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHh----------------------c-CChHHHHHHHHHHHHHHHHH-HHHHhh
Confidence 45677889999999999888999877521 1 16789999999999999999 988764
No 19
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=85.69 E-value=19 Score=30.87 Aligned_cols=135 Identities=13% Similarity=0.090 Sum_probs=94.7
Q ss_pred hhHHhhHHHHHHHHHHHHHhhhhCCCCCccchhhhcCCCCCCCcccCCCCHHHHHHHHHHHHhHHHHHHHHHHHhhc-CC
Q 021580 41 KDLIQVALNLEFLETEFFLNGALGRGLDSIEPEMAAGGPPPTGASKANLDHTTYRIIEEFGYQEIGHLSRAIVTTVG-GF 119 (310)
Q Consensus 41 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~~L~~aLg-av 119 (310)
++.||=.+...|=--++|..++.- + =++.++.++++++.+...|+ .-|+..+. --
T Consensus 2 i~~Ln~Lie~~~D~~~gY~~aae~----------------------v-~~~~lk~~f~~~~~~~~~~~-~eL~~~v~~lG 57 (139)
T TIGR02284 2 IHSLNDLIEISIDGKDGFEESAEE----------------------V-KDPELATLFRRIAGEKSAIV-SELQQVVASLG 57 (139)
T ss_pred hHHHHHHHHHcccHHHHHHHHHHH----------------------C-CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHhC
Confidence 467888888888777999998731 1 25789999999999999999 99998886 11
Q ss_pred CCCcccccchhhHHHHHhhhcCCCCCCCCCCCChHHHHHHHhhccchhHhhhccccccc-CChhHHHHHHHHHHHhhhhH
Q 021580 120 ARPQIDLSRQNFANIFDQAVGYKLTPPFDPYSNTVNYLLASYVIPYVGLVGYVGTIPNL-VNCTSRSLVAGLLGVESGQD 198 (310)
Q Consensus 120 ~rP~iDls~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~v~E~VGvtAY~Gaap~l-~~~~~l~aAA~Il~VEA~Ha 198 (310)
..|.- .++|...+..+.- .+...|.+ .++..+|....-=|+..+.+|.-+...- -.++++...-..+.-+-+|.
T Consensus 58 g~p~~---~gs~~g~lhr~w~-~lks~~~~-~~d~aiL~~~e~gEd~~~~~y~~aL~~~~l~~~~r~~l~~q~~~i~~~~ 132 (139)
T TIGR02284 58 GKPED---HGSMVGSLHQFWG-KIRATLTP-NDDYVVLEEAERGEDRAKKAYDETLADQDTPAAARDVALRQYPGVRACH 132 (139)
T ss_pred CCCCC---CCcHHHHHHHHHH-HHHHHHcC-CChHHHHHHHHHhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHH
Confidence 23331 1244433333210 00001222 4688899999999999999999998765 56777888888887777777
Q ss_pred HHHHHH
Q 021580 199 AVIRTL 204 (310)
Q Consensus 199 a~IRtl 204 (310)
.+||.+
T Consensus 133 d~i~~l 138 (139)
T TIGR02284 133 DVIRAL 138 (139)
T ss_pred HHHHhc
Confidence 777754
No 20
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=85.62 E-value=2.5 Score=33.92 Aligned_cols=53 Identities=21% Similarity=0.208 Sum_probs=44.2
Q ss_pred ChhhHHhhHHHHHHHHHHHHHhhhhCCCCCccchhhhcCCCCCCCcccCCCCHHHHHHHHHHHHhHHHHHHHHHHHh
Q 021580 39 NDKDLIQVALNLEFLETEFFLNGALGRGLDSIEPEMAAGGPPPTGASKANLDHTTYRIIEEFGYQEIGHLSRAIVTT 115 (310)
Q Consensus 39 ~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~~L~~a 115 (310)
+...+|..|+..|---..||...+.. .-++.+++++.+|+.+|..|+ +.|+..
T Consensus 84 ~~~~~l~~a~~~E~~~~~~Y~~~a~~-----------------------~~~~~~~~~~~~l~~~E~~H~-~~l~~l 136 (137)
T PF02915_consen 84 NLEEALEMAIKEEKDAYEFYAELARK-----------------------APDPEIRKLFEELAKEEKEHE-DLLEKL 136 (137)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHH-----------------------TTSHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------CCCHHHHHHHHHHHHHHHHHH-HHHHHh
Confidence 36788899999998888999998632 136889999999999999999 988763
No 21
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=81.81 E-value=29 Score=28.93 Aligned_cols=126 Identities=12% Similarity=-0.058 Sum_probs=88.8
Q ss_pred hhhHHhhHHHHHHHHHHHHHhhhhCCCCCccchhhhcCCCCCCCcccCCCCHHHHHHHHHHHHhHHHHHHHHHHHhhc-C
Q 021580 40 DKDLIQVALNLEFLETEFFLNGALGRGLDSIEPEMAAGGPPPTGASKANLDHTTYRIIEEFGYQEIGHLSRAIVTTVG-G 118 (310)
Q Consensus 40 D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~~L~~aLg-a 118 (310)
..+.||=|+.-|+-....|..-+.- ++.-++ +.+.+.+..++..|..|. .-+.+.|. -
T Consensus 2 t~~~L~~a~~~E~~a~~~Y~~~a~~-------------------a~~~g~-~~~a~~f~~~a~eE~~HA-~~~~~~l~~l 60 (134)
T cd01041 2 TEKNLLAAFAGESQARNRYTYFAEK-------------------ARKEGY-EQIARLFRATAENEKEHA-KGHFKLLKGL 60 (134)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHH-------------------HHHCCH-HHHHHHHHHHHHHHHHHH-HHHHHHHhcC
Confidence 3578999999999877777654321 011222 467888999999999999 77766665 1
Q ss_pred CCCCcccccchhhHHHHHhhhcCCCCCCCCCCCChHHHHHHHhhccch-hHhhhccccc---ccCChhHHHHHHHHHHHh
Q 021580 119 FARPQIDLSRQNFANIFDQAVGYKLTPPFDPYSNTVNYLLASYVIPYV-GLVGYVGTIP---NLVNCTSRSLVAGLLGVE 194 (310)
Q Consensus 119 v~rP~iDls~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~v~E~V-GvtAY~Gaap---~l~~~~~l~aAA~Il~VE 194 (310)
-..|. +|-.++.+...-|..+.--|.- ....|.-.+. .-.+..+....-.|+..|
T Consensus 61 ~g~~~---------------------~~~~~~~~~~~~l~~~~~~E~~e~~~~y~~~~~~A~~e~d~~~~~~f~~i~~~E 119 (134)
T cd01041 61 GGGDT---------------------GPPIGIGDTLENLKAAIAGETYEYTEMYPEFAEVAEEEGFKEAARSFEAIAEAE 119 (134)
T ss_pred CCCCc---------------------CCCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 12222 1223456777888888888873 5577765554 455677788888999999
Q ss_pred hhhHHHHHHHHhh
Q 021580 195 SGQDAVIRTLLYE 207 (310)
Q Consensus 195 A~Haa~IRtlL~~ 207 (310)
.+|.-++..+|..
T Consensus 120 ~~H~~~l~~~l~~ 132 (134)
T cd01041 120 KVHAERYKKALEN 132 (134)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999988764
No 22
>PF14530 DUF4439: Domain of unknown function (DUF4439); PDB: 2IB0_B.
Probab=76.04 E-value=27 Score=30.13 Aligned_cols=102 Identities=15% Similarity=0.142 Sum_probs=66.2
Q ss_pred CCCCHHHHHHHHHHHHhHHHHHHHHHHHhhc--CCCCCcccccchhhHHHHHhhhcCCCCCCCCCCCChHHHHHHHhhcc
Q 021580 87 ANLDHTTYRIIEEFGYQEIGHLSRAIVTTVG--GFARPQIDLSRQNFANIFDQAVGYKLTPPFDPYSNTVNYLLASYVIP 164 (310)
Q Consensus 87 a~l~~~v~~~~~eia~~E~~HV~~~L~~aLg--av~rP~iDls~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~v~E 164 (310)
+.+++..++.+.+......... +.|...|. +...|. ..-||.+ || |-.|..+-+..+..+|
T Consensus 21 a~~~~~~r~~~~~~~~~HR~rR-d~l~~~l~~~g~~~p~-------------~~aaY~l--P~-~v~d~~sa~~la~~lE 83 (131)
T PF14530_consen 21 ARLDGDRRAAARAALAAHRARR-DALAAALRAAGATPPP-------------PEAAYQL--PF-PVTDPASAAALAAALE 83 (131)
T ss_dssp HHS-GGGHHHHHHHHHHHHHHH-HHHHHHHHHTT--------------------SS-----SS----SHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCCCC-------------CCCCCCC--CC-CCCCHHHHHHHHHHHH
Confidence 3456777888888888888888 88888886 211111 0113433 56 4588889898999999
Q ss_pred chhHhhhcccccccCChhHHHHHHHHHHHhhhhHHHHHHHHh
Q 021580 165 YVGLVGYVGTIPNLVNCTSRSLVAGLLGVESGQDAVIRTLLY 206 (310)
Q Consensus 165 ~VGvtAY~Gaap~l~~~~~l~aAA~Il~VEA~Haa~IRtlL~ 206 (310)
.=-..+|.... .-.+.+.++.+...|..-+.-..-.|..+.
T Consensus 84 ~~~a~aw~~lv-~a~~~~~R~~av~aL~~aA~ra~~W~~~~g 124 (131)
T PF14530_consen 84 DDCAAAWRALV-AATDPALRRFAVDALTEAAVRAARWRAAAG 124 (131)
T ss_dssp HHHHHHHHHHH-H--SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hcCChhHHHHHHHHHHHHHHHHHHhccccC
Confidence 99999999998 888889999888888776665555554443
No 23
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=73.97 E-value=24 Score=29.42 Aligned_cols=59 Identities=17% Similarity=0.064 Sum_probs=46.0
Q ss_pred CChhhHHhhHHHHHHHHH-HHHHhhhhCCCCCccchhhhcCCCCCCCcccCCCCHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 021580 38 ANDKDLIQVALNLEFLET-EFFLNGALGRGLDSIEPEMAAGGPPPTGASKANLDHTTYRIIEEFGYQEIGHLSRAIVTTV 116 (310)
Q Consensus 38 ~~D~diLNFALnLEyLEa-~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~~L~~aL 116 (310)
.+..++|..++..|.-|+ +.|...+.- + ...=|..+.+.+++|..+|..|+ +.|+..|
T Consensus 72 ~~~~~~l~~~~~~E~~e~~~~y~~~~~~----------A----------~~e~d~~~~~~f~~i~~~E~~H~-~~l~~~l 130 (134)
T cd01041 72 GDTLENLKAAIAGETYEYTEMYPEFAEV----------A----------EEEGFKEAARSFEAIAEAEKVHA-ERYKKAL 130 (134)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHHH----------H----------HHcCCHHHHHHHHHHHHHHHHHH-HHHHHHh
Confidence 455699999999999877 777776521 1 01226788999999999999999 9999987
Q ss_pred c
Q 021580 117 G 117 (310)
Q Consensus 117 g 117 (310)
+
T Consensus 131 ~ 131 (134)
T cd01041 131 E 131 (134)
T ss_pred h
Confidence 5
No 24
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=73.67 E-value=10 Score=42.52 Aligned_cols=57 Identities=18% Similarity=0.302 Sum_probs=47.0
Q ss_pred CCChhhHHhhHHHHHHHHHHHHHhhhhCCCCCccchhhhcCCCCCCCcccCCCCHH-HHHHHHHHHHhHHHHHHHHHHHh
Q 021580 37 EANDKDLIQVALNLEFLETEFFLNGALGRGLDSIEPEMAAGGPPPTGASKANLDHT-TYRIIEEFGYQEIGHLSRAIVTT 115 (310)
Q Consensus 37 ~~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~-v~~~~~eia~~E~~HV~~~L~~a 115 (310)
..++.++|.+|+-.|.=--+||...+.. + -|+. .++++++|+..|..|+ +.|++.
T Consensus 939 ~~~~~~al~lAm~~Ekdai~fY~~la~~----------------------~-~d~e~~k~l~~~LA~EEk~Hl-~~L~~~ 994 (1006)
T PRK12775 939 PDDPGNLFRIAIEFERRAVKFFKERVAE----------------------T-PDGSVERQLYKELAAEEREHV-ALLTTE 994 (1006)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHhh----------------------C-CChHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 3457999999999999888999998621 1 1344 6999999999999999 999987
Q ss_pred hc
Q 021580 116 VG 117 (310)
Q Consensus 116 Lg 117 (310)
+.
T Consensus 995 ~d 996 (1006)
T PRK12775 995 FE 996 (1006)
T ss_pred HH
Confidence 64
No 25
>PF09968 DUF2202: Uncharacterized protein domain (DUF2202); InterPro: IPR019243 This domain, found in various hypothetical archaeal proteins, has no known function.; PDB: 3Q4O_A 3Q4Q_A 3Q4R_A 3Q4N_A.
Probab=69.37 E-value=87 Score=28.20 Aligned_cols=149 Identities=14% Similarity=0.120 Sum_probs=94.5
Q ss_pred hhHHhhHHHHHHHHHHHHHhhhhCCCCCccchhhhcCCCCCCCcccCCCCHHHHHHHHHHHHhHHHHHHHHHHHhhc--C
Q 021580 41 KDLIQVALNLEFLETEFFLNGALGRGLDSIEPEMAAGGPPPTGASKANLDHTTYRIIEEFGYQEIGHLSRAIVTTVG--G 118 (310)
Q Consensus 41 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~~L~~aLg--a 118 (310)
.+-|-|.+-=|+|.-..|..-... +-..++..|+.-|+.|. .+++..+. +
T Consensus 2 ~~~Ll~m~EEEKlArDvY~~l~~~---------------------------~g~~~F~NIa~SEq~Hm-dav~~Ll~kY~ 53 (162)
T PF09968_consen 2 IEGLLYMREEEKLARDVYLTLYEK---------------------------WGLPIFNNIARSEQRHM-DAVKALLEKYG 53 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---------------------------H--HHHHHHHHHHHHHH-HHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH---------------------------cCChHhHHHHHHHHHHH-HHHHHHHHHhC
Confidence 466889999999999999887532 33567889999999999 99999998 8
Q ss_pred CCCCcccccchhhHH-----HHHhh--hcCCCCCCCCCCCChHHHHHHHhhccchhHhhhcccccccCChhHHHHHHHHH
Q 021580 119 FARPQIDLSRQNFAN-----IFDQA--VGYKLTPPFDPYSNTVNYLLASYVIPYVGLVGYVGTIPNLVNCTSRSLVAGLL 191 (310)
Q Consensus 119 v~rP~iDls~~~F~~-----~~~~A--~g~~l~p~FdPy~n~~~FL~~A~v~E~VGvtAY~Gaap~l~~~~~l~aAA~Il 191 (310)
++-|..+...+.|+. +-+.. -|. .+..+=|.....+|.+-+.=+.-+...-.+++++.+=-.++
T Consensus 54 l~dP~~~~~~G~f~~~~lq~LY~~Lv~~G~---------~S~~dAl~vga~iEe~dI~DL~~~l~~t~~~Di~~Vy~nL~ 124 (162)
T PF09968_consen 54 LEDPVEGDPVGVFTNPELQELYNQLVEQGS---------KSLEDALKVGALIEELDIADLEEALARTDNEDIKTVYENLR 124 (162)
T ss_dssp ---S-SS-STT--SSHHHHHHHHHHHHHHT---------S-HHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHH
T ss_pred CCCCCccCCCCCcCcHHHHHHHHHHHHHhh---------hcHHHHHHHhHHHHHhhHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 888887775555542 11111 122 35566677888899999998888888888888887777777
Q ss_pred HHhhhhHHHHHHHHhhhhhcccCCCcccHHHHHHHH
Q 021580 192 GVESGQDAVIRTLLYERADQIVVPYKMTVAEFTDRI 227 (310)
Q Consensus 192 ~VEA~Haa~IRtlL~~~~~~~v~Py~~tV~~~t~~I 227 (310)
.--..|-......|...+. .-.|--++-.+|-.-|
T Consensus 125 ~gS~NHLrAF~r~L~~~g~-~Y~pq~ls~~e~~~i~ 159 (162)
T PF09968_consen 125 RGSRNHLRAFVRQLERYGV-TYTPQYLSQEEFEAIL 159 (162)
T ss_dssp HHHHHHHHHHHHHHHHTT------SSS-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC-CCCCeecCHHHHHHHH
Confidence 6656786544444555554 3566667777765544
No 26
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=68.91 E-value=22 Score=30.18 Aligned_cols=55 Identities=11% Similarity=0.004 Sum_probs=45.9
Q ss_pred CCCChhhHHhhHHHHHHHHHHHHHhhhhCCCCCccchhhhcCCCCCCCcccCCCCHHHHHHHHHHHHhHHHHHHHHHH
Q 021580 36 IEANDKDLIQVALNLEFLETEFFLNGALGRGLDSIEPEMAAGGPPPTGASKANLDHTTYRIIEEFGYQEIGHLSRAIV 113 (310)
Q Consensus 36 ~~~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~~L~ 113 (310)
...+|.+.|+.+...|-.-.+||...+.. --++.++.++..++.-|..|...|.|
T Consensus 79 ~~~s~~~al~~g~~~E~~~i~~ye~~~~~-----------------------~~d~d~k~v~~~L~~~e~~H~~~f~~ 133 (135)
T cd01048 79 GPKSLQDALEVGVLIEELDIADYDRLLER-----------------------TQNPDIRDVFENLQAASRNHHLPFFR 133 (135)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHh-----------------------cccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999998732 12588999999999999999933433
No 27
>PF11272 DUF3072: Protein of unknown function (DUF3072); InterPro: IPR021425 This bacterial family of proteins has no known function.
Probab=65.55 E-value=16 Score=27.62 Aligned_cols=39 Identities=31% Similarity=0.468 Sum_probs=32.2
Q ss_pred hhhHHHHHHHHhhhhhcccCCCcccHHHHHHHHHHHHHhhC
Q 021580 195 SGQDAVIRTLLYERADQIVVPYKMTVAEFTDRISALRNRLG 235 (310)
Q Consensus 195 A~Haa~IRtlL~~~~~~~v~Py~~tV~~~t~~IS~lR~~L~ 235 (310)
..|++++|+|--+.++. + |-++|.+|...+|-.||.+.+
T Consensus 18 ~aQ~syL~tL~e~Age~-~-~~~LtkaeAs~rId~L~~~~g 56 (57)
T PF11272_consen 18 GAQASYLKTLSEEAGEP-F-PDDLTKAEASERIDELQAQTG 56 (57)
T ss_pred HHHHHHHHHHHHHhCCC-C-CCcccHHHHHHHHHHHHHHhC
Confidence 46889999998887733 2 338999999999999999876
No 28
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain. Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.
Probab=65.05 E-value=24 Score=31.64 Aligned_cols=105 Identities=15% Similarity=0.126 Sum_probs=70.9
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHHHHhhc-CCCCCcccccchhhHHHHHhhhcCCCCCCCCCCCChHHHHHHHhhccchhH
Q 021580 90 DHTTYRIIEEFGYQEIGHLSRAIVTTVG-GFARPQIDLSRQNFANIFDQAVGYKLTPPFDPYSNTVNYLLASYVIPYVGL 168 (310)
Q Consensus 90 ~~~v~~~~~eia~~E~~HV~~~L~~aLg-av~rP~iDls~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~v~E~VGv 168 (310)
++.++..++|++.+|..|+ ....+.|. --.||.+-.. -| .++.-+.|. .-....+...+..-.-.|.+-.
T Consensus 28 ~~~~~~~l~~~~~~E~~Hl-~~f~~~i~~~~~rps~l~P--lW-~~~gf~lG~-----~tal~G~~~a~~~~~avE~~V~ 98 (165)
T cd01042 28 DPAVRPLIKEMLDEEKDHL-AWFEELLPELGVRPSLLLP--LW-YVAGFALGA-----LTALLGKKAAMACTAAVETVVE 98 (165)
T ss_pred CHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCCchHHH--HH-HHHHHHHHH-----HHHhhChHHHHHHHHHHHHHHH
Confidence 4889999999999999999 99998887 3345543221 11 111111111 0011234445555666788888
Q ss_pred hhhcccccccC---ChhHHHHHHHHHHHhhhhHHHHHH
Q 021580 169 VGYVGTIPNLV---NCTSRSLVAGLLGVESGQDAVIRT 203 (310)
Q Consensus 169 tAY~Gaap~l~---~~~~l~aAA~Il~VEA~Haa~IRt 203 (310)
.=|......|. ++.++.....+.--|..|.-.-..
T Consensus 99 ~Hy~~ql~~L~~~~d~~l~~~l~~~r~DE~~H~d~A~~ 136 (165)
T cd01042 99 EHYNDQLRELPAQPDKELRAIIEQFRDDELEHADIAEE 136 (165)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999888887 788899999999999999865443
No 29
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=64.08 E-value=93 Score=26.61 Aligned_cols=128 Identities=16% Similarity=0.103 Sum_probs=89.8
Q ss_pred hhhHHhhHHHHHHHHHHHHHhhhhCCCCCccchhhhcCCCCCCCcccCCCCHHHHHHHHHHHHhHHHHHHHHHHHhh---
Q 021580 40 DKDLIQVALNLEFLETEFFLNGALGRGLDSIEPEMAAGGPPPTGASKANLDHTTYRIIEEFGYQEIGHLSRAIVTTV--- 116 (310)
Q Consensus 40 D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~~L~~aL--- 116 (310)
=++.||=+|+-||.-...|..-..-. . .-++ +.+...+...+.+|..|. .-|-.-|
T Consensus 7 ~~~~LN~~l~~E~~a~~~Y~~~~~~~--~-----------------~~~~-~g~a~~~~~~a~EE~~Ha-~~laeri~~l 65 (157)
T TIGR00754 7 VIQHLNKQLTNELTAINQYFLHARMQ--K-----------------NWGL-KELADHEYHESIDEMKHA-DEIIERILFL 65 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--H-----------------cCCc-HHHHHHHHHHHHHHHHHH-HHHHHHHHHC
Confidence 36889999999997665555443210 0 0111 345667788888999999 5555443
Q ss_pred cCCCCCcccccchhhHHHHHhhhcCCCCCCCCCCCChHHHHHHHhhccchhHhhhccccc---ccCChhHHHHHHHHHHH
Q 021580 117 GGFARPQIDLSRQNFANIFDQAVGYKLTPPFDPYSNTVNYLLASYVIPYVGLVGYVGTIP---NLVNCTSRSLVAGLLGV 193 (310)
Q Consensus 117 gav~rP~iDls~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~v~E~VGvtAY~Gaap---~l~~~~~l~aAA~Il~V 193 (310)
|+.|. +. ++. +..+-.+....+-...-.|......|...+. ...++....+.-.|+.-
T Consensus 66 Gg~p~--~~----------------~i~-~~~~~~~~~e~l~~~l~~E~~~~~~~~e~i~~A~~~~D~~t~~ll~~~i~e 126 (157)
T TIGR00754 66 EGLPN--LQ----------------DLG-KLRIGETVREMLEADLALELDVLNRLKEAIAYAEEVRDYVSRDLLEEILED 126 (157)
T ss_pred CCCCC--CC----------------cCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34332 21 011 1223357888899999999999999999855 67788888888999999
Q ss_pred hhhhHHHHHHHHhh
Q 021580 194 ESGQDAVIRTLLYE 207 (310)
Q Consensus 194 EA~Haa~IRtlL~~ 207 (310)
|-.|.-++|+.|..
T Consensus 127 ee~h~~~l~~~l~~ 140 (157)
T TIGR00754 127 EEEHIDWLETQLEL 140 (157)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998875
No 30
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=60.33 E-value=1.1e+02 Score=26.85 Aligned_cols=82 Identities=13% Similarity=0.008 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhhcccCC--CCCCC--CCCChhhHHhhHHHHHHHHHHHHHhhhhCCCCCccchhhhcCCCCCCCcccC
Q 021580 12 LHLTLMNILFGMVVGAAAP--ASRGP--IEANDKDLIQVALNLEFLETEFFLNGALGRGLDSIEPEMAAGGPPPTGASKA 87 (310)
Q Consensus 12 ~~~~~~~~la~~~~~~a~~--a~~~~--~~~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a 87 (310)
-|+-.++-++.++.+.+.. -+++- .+.+-+.+|...+..|.--..-|.+-..- .
T Consensus 68 ~H~e~la~~I~~Lg~~~~g~pw~~~yv~~~~d~~~~L~~ni~aE~~Ai~~Y~~l~~~----------------------~ 125 (156)
T cd01051 68 SHLEMVATLIAMLLKDSQGVPWTAAYIQSSGNLVADLRSNIAAESRARLTYERLYEM----------------------T 125 (156)
T ss_pred HHHHHHHHHHHHHcCCCCCCcCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----------------------c
Confidence 4777777777766643211 11111 22345778889999999888999887521 1
Q ss_pred CCCHHHHHHHHHHHHhHHHHHHHHHHHhhc
Q 021580 88 NLDHTTYRIIEEFGYQEIGHLSRAIVTTVG 117 (310)
Q Consensus 88 ~l~~~v~~~~~eia~~E~~HV~~~L~~aLg 117 (310)
-|+.+++++..|..+|..|. +.++++|.
T Consensus 126 -~Dp~v~~~l~~I~~rE~~H~-~~f~~~l~ 153 (156)
T cd01051 126 -DDPGVKDTLSFLLVREIVHQ-NAFGKALE 153 (156)
T ss_pred -CCHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 17899999999999999999 99888875
No 31
>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]. It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process
Probab=57.82 E-value=21 Score=32.10 Aligned_cols=33 Identities=21% Similarity=0.200 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHHHHhhc-CCCCCc
Q 021580 90 DHTTYRIIEEFGYQEIGHLSRAIVTTVG-GFARPQ 123 (310)
Q Consensus 90 ~~~v~~~~~eia~~E~~HV~~~L~~aLg-av~rP~ 123 (310)
++.++..++++..+|..|+ ...++.|. --.||.
T Consensus 31 ~~~~~~~l~~~~~~E~~Hl-~~f~~~l~~~~~RpS 64 (172)
T PF03232_consen 31 DPELRPFLKEMAEEEKDHL-AWFEQLLPELRVRPS 64 (172)
T ss_pred CHHHHHHHHHHHHHHHHHH-HHHHHHhHHcCCCCc
Confidence 6889999999999999999 99998887 223564
No 32
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=56.70 E-value=1.1e+02 Score=25.29 Aligned_cols=115 Identities=12% Similarity=0.050 Sum_probs=80.5
Q ss_pred hHHhhHHHHHHHHHHHHHhhhhCCCCCccchhhhcCCCCCCCcccCCCCHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCC
Q 021580 42 DLIQVALNLEFLETEFFLNGALGRGLDSIEPEMAAGGPPPTGASKANLDHTTYRIIEEFGYQEIGHLSRAIVTTVGGFAR 121 (310)
Q Consensus 42 diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~~L~~aLgav~r 121 (310)
+-||=+++-|.-+...|..-+.- ++.-++ +.+.+.+..++..|..|. +.+.+.++.++
T Consensus 4 ~~L~~a~~~E~~a~~~Y~~~a~~-------------------a~~eG~-~~~A~~f~~~a~eE~~HA-~~~~~~l~~i~- 61 (123)
T cd01046 4 EDLEANFKGETTEVGMYLAMARV-------------------AQREGY-PEVAEELKRIAMEEAEHA-ARFAELLGKVS- 61 (123)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHH-------------------HHHCCC-HHHHHHHHHHHHHHHHHH-HHHHHHHhcCc-
Confidence 57899999999999888775421 112233 468899999999999999 87777776543
Q ss_pred CcccccchhhHHHHHhhhcCCCCCCCCCCCChHHHHHHHhhccchhHhhhcccc---cccCChhHHHHHHHHHHHhhhhH
Q 021580 122 PQIDLSRQNFANIFDQAVGYKLTPPFDPYSNTVNYLLASYVIPYVGLVGYVGTI---PNLVNCTSRSLVAGLLGVESGQD 198 (310)
Q Consensus 122 P~iDls~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~v~E~VGvtAY~Gaa---p~l~~~~~l~aAA~Il~VEA~Ha 198 (310)
.|...-|..+.--|.-.+..|...+ -.-.+.+....--.|+.+|..|.
T Consensus 62 -----------------------------~~~~~~le~a~~~E~~~~~~~~~~~~~A~~egd~~~~~~~~~~~~~E~~H~ 112 (123)
T cd01046 62 -----------------------------EDTKENLEMMLEGEAGANEGKKDAATEAKAEGLDEAHDFFHEAAKDEARHG 112 (123)
T ss_pred -----------------------------ccHHHHHHHHHHhHHHHHHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 1233344455555555555555433 23456777888889999999999
Q ss_pred HHHHHHHhh
Q 021580 199 AVIRTLLYE 207 (310)
Q Consensus 199 a~IRtlL~~ 207 (310)
-+++.+|..
T Consensus 113 ~~~~~~l~~ 121 (123)
T cd01046 113 KMLKGLLER 121 (123)
T ss_pred HHHHHHHhh
Confidence 999988764
No 33
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=56.46 E-value=54 Score=27.40 Aligned_cols=59 Identities=15% Similarity=0.188 Sum_probs=48.1
Q ss_pred CChhhHHhhHHHHHHHHHHHHHhhhhCCCCCccchhhhcCCCCCCCcccCCCCHHHHHHHHHHHHhHHHHHHHHHHHhhc
Q 021580 38 ANDKDLIQVALNLEFLETEFFLNGALGRGLDSIEPEMAAGGPPPTGASKANLDHTTYRIIEEFGYQEIGHLSRAIVTTVG 117 (310)
Q Consensus 38 ~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~~L~~aLg 117 (310)
.++.++|+.++..|.--.+-|..... ++ ...-|+.+.++++.|..+|..|. .+|++.++
T Consensus 80 ~~~~~~l~~~l~~E~~~~~~y~~~~~----------~A----------~~~~D~~t~~~l~~~~~~e~~h~-~~l~~~l~ 138 (153)
T cd00907 80 EDVPEMLENDLALEYEAIAALNEAIA----------LC----------EEVGDYVSRDLLEEILEDEEEHI-DWLETQLD 138 (153)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH----------HH----------HHcCCHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 46789999999999988899988741 01 01247889999999999999999 99998876
No 34
>COG2406 Protein distantly related to bacterial ferritins [General function prediction only]
Probab=55.59 E-value=1.6e+02 Score=26.61 Aligned_cols=105 Identities=19% Similarity=0.141 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhc--CCCCC-----cccccchhhHHHHHhhhcCCCCCCCCCCCChHHHHHHHhhccc
Q 021580 93 TYRIIEEFGYQEIGHLSRAIVTTVG--GFARP-----QIDLSRQNFANIFDQAVGYKLTPPFDPYSNTVNYLLASYVIPY 165 (310)
Q Consensus 93 v~~~~~eia~~E~~HV~~~L~~aLg--av~rP-----~iDls~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~v~E~ 165 (310)
...++++-...-..|. +.|..-|- ++.-| ..|+|++. .+ --|-||| |...+|....--|-
T Consensus 51 ~keiae~Ar~E~r~H~-e~i~~Ri~elg~~~Prd~~~l~dISgC~----------~a-~LPedp~-D~~~~l~vlv~AE~ 117 (172)
T COG2406 51 IKEIAEEAREEDRKHF-ELIAPRIYELGGDLPRDMKKLHDISGCK----------PA-YLPEDPY-DIDEILAVLVKAER 117 (172)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHhCCCCchhHHHHHhhcCCC----------CC-CCCCCcc-CHHHHHHHHHHHHH
Confidence 4445555555556798 99887765 33323 23444322 11 1156674 56678888888899
Q ss_pred hhHhhhcccccccCC--hhHHHHHHHHHHHhhhhHHHHHHHHhhhhh
Q 021580 166 VGLVGYVGTIPNLVN--CTSRSLVAGLLGVESGQDAVIRTLLYERAD 210 (310)
Q Consensus 166 VGvtAY~Gaap~l~~--~~~l~aAA~Il~VEA~Haa~IRtlL~~~~~ 210 (310)
-.+.+|+-.-.+-.+ +..-.+|-.||--|-.|.+|+-.+|++.+.
T Consensus 118 CAir~ykeic~~T~GkDprTyeLa~~IL~eEi~hr~~~~~ll~~~~s 164 (172)
T COG2406 118 CAIRAYKEICNLTAGKDPRTYELAEAILREEIEHRTWFLELLGKEPS 164 (172)
T ss_pred HHHHHHHHHHccccCCCcchHHHHHHHHHHHHHHHHHHHHHhccCch
Confidence 999999977665544 446789999999999999999999998654
No 35
>PRK10635 bacterioferritin; Provisional
Probab=54.98 E-value=54 Score=28.82 Aligned_cols=60 Identities=17% Similarity=0.194 Sum_probs=49.0
Q ss_pred CCChhhHHhhHHHHHHHHHHHHHhhhhCCCCCccchhhhcCCCCCCCcccCCCCHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 021580 37 EANDKDLIQVALNLEFLETEFFLNGALGRGLDSIEPEMAAGGPPPTGASKANLDHTTYRIIEEFGYQEIGHLSRAIVTTV 116 (310)
Q Consensus 37 ~~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~~L~~aL 116 (310)
..+=.++|...|.+|+=-.+-|..++. ++. ..-|...++++++|-.+|..|. +.|++.|
T Consensus 80 g~~v~eml~~dl~~E~~ai~~y~e~i~----------~a~----------~~~D~~s~~ll~~iL~dEe~H~-~~le~~l 138 (158)
T PRK10635 80 GEDVEEMLRSDLRLELEGAKDLREAIA----------YAD----------SVHDYVSRDMMIEILADEEGHI-DWLETEL 138 (158)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH----------HHH----------HcCCHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 345578999999999988899999862 111 1247889999999999999999 9999987
Q ss_pred c
Q 021580 117 G 117 (310)
Q Consensus 117 g 117 (310)
+
T Consensus 139 ~ 139 (158)
T PRK10635 139 D 139 (158)
T ss_pred H
Confidence 6
No 36
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=50.47 E-value=62 Score=29.13 Aligned_cols=58 Identities=14% Similarity=0.177 Sum_probs=47.6
Q ss_pred CCCChhhHHhhHHHHHHHHHHHHHhhhhCCCCCccchhhhcCCCCCCCcccCCCCHHHHHHHHHHHHhHHHHHHHHHHHh
Q 021580 36 IEANDKDLIQVALNLEFLETEFFLNGALGRGLDSIEPEMAAGGPPPTGASKANLDHTTYRIIEEFGYQEIGHLSRAIVTT 115 (310)
Q Consensus 36 ~~~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~~L~~a 115 (310)
.+.+..+.|.+|.-.|.---+||...+. ...+..++.++++++.||.+|+ +.|++-
T Consensus 110 ~~~~~~~~I~~a~~~E~~t~~~Y~~~~~-----------------------~~~~~~~~~~~~~~a~~E~~H~-~~l~~~ 165 (176)
T COG1633 110 KSVSYLEAIEAAMEAEKDTIEFYEELLD-----------------------ELVNEEAKKLFKTIADDEKGHA-SGLLSL 165 (176)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HccCHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 3456788999999999999999999862 2235678889999999999999 888875
Q ss_pred hc
Q 021580 116 VG 117 (310)
Q Consensus 116 Lg 117 (310)
+.
T Consensus 166 ~~ 167 (176)
T COG1633 166 YN 167 (176)
T ss_pred HH
Confidence 54
No 37
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=49.34 E-value=81 Score=25.24 Aligned_cols=103 Identities=15% Similarity=0.094 Sum_probs=50.2
Q ss_pred hhHHhhHHHHHHHHHHHHHhhhhCCCCCccchhhhcCCCCCCCcccCCCCHHHHHHHHHHHHhHHHHHHHHHHHhhc-CC
Q 021580 41 KDLIQVALNLEFLETEFFLNGALGRGLDSIEPEMAAGGPPPTGASKANLDHTTYRIIEEFGYQEIGHLSRAIVTTVG-GF 119 (310)
Q Consensus 41 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~~L~~aLg-av 119 (310)
++.||=.|..+|=-.+.|..++. + +. ++..+.++++++.+...|+ .-|+..|. --
T Consensus 3 i~~Ln~Ll~~~~d~~~~Y~~a~~-----~-----------------~~-~~~lk~~f~~~~~~~~~~~-~~L~~~i~~~G 58 (111)
T PF09537_consen 3 IEALNDLLKGLHDGIEGYEKAAE-----K-----------------AE-DPELKSLFQEFAQERQQHA-EELQAEIQELG 58 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----H--------------------SHHHHHHHHHHHHHHHHHH-HHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----H-----------------CC-CHHHHHHHHHHHHHHHHHH-HHHHHHHHHcC
Confidence 67899999999999999999972 1 11 6899999999999999999 99999886 22
Q ss_pred CCCcccccchhhHHHHHhhh-cCCCCCCCCCCCChHH-HHHHHhhccchhHhhhccc
Q 021580 120 ARPQIDLSRQNFANIFDQAV-GYKLTPPFDPYSNTVN-YLLASYVIPYVGLVGYVGT 174 (310)
Q Consensus 120 ~rP~iDls~~~F~~~~~~A~-g~~l~p~FdPy~n~~~-FL~~A~v~E~VGvtAY~Ga 174 (310)
..|.-+ ++|...+..+. ..+ --| -.++.+ +|-.+.-=|+.++.+|.=+
T Consensus 59 g~p~~~---gs~~g~~~r~~~~ik--~~~--~~~d~~aiL~~~~~gE~~~~~~y~~a 108 (111)
T PF09537_consen 59 GEPEES---GSFKGALHRAWMDIK--SAL--GGDDDEAILEECERGEDMALEAYEDA 108 (111)
T ss_dssp --H-------HHCHHHH-TTTHHH--HS-------H---------------------
T ss_pred CCcCcc---cCHHHHHHHHHHHHH--HHh--cCCCccchhhhhhhhhhhhhhhcccc
Confidence 333322 23333333331 000 001 123333 6777777788888887644
No 38
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=48.95 E-value=1.6e+02 Score=24.73 Aligned_cols=129 Identities=12% Similarity=0.084 Sum_probs=74.1
Q ss_pred hhHHhhHHHHHHHHHHHHHhhhhCCCCCccchhhhcCCCCCCCcccCCCCHHHHHHHHHHHHhHHHHHHHHHHHhh-cCC
Q 021580 41 KDLIQVALNLEFLETEFFLNGALGRGLDSIEPEMAAGGPPPTGASKANLDHTTYRIIEEFGYQEIGHLSRAIVTTV-GGF 119 (310)
Q Consensus 41 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~~L~~aL-gav 119 (310)
.+.||=+++.|+--...|+.-+.-. + +.++ +.+.+.++..+.+|..|. .-+-+-+ .--
T Consensus 5 ~~~Ln~~~~~El~A~~~Yl~~a~~~--~-----------------~~~~-~~~a~~f~~~a~eE~~HA-~~l~~~i~~~g 63 (156)
T cd01055 5 EKALNEQINLELYSSYLYLAMAAWF--D-----------------SKGL-DGFANFFRVQAQEEREHA-MKFFDYLNDRG 63 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--h-----------------hcCC-hhHHHHHHHHHHHHHHHH-HHHHHHHHHCC
Confidence 4689999999998888887654211 1 1122 467889999999999999 5544443 211
Q ss_pred CCCcccccchhhHHHHHhhhcCCCCCCCCCCCChHHHHHHHhhccchhHhhhcccccc---cCChhHHHHHHHHHHHhhh
Q 021580 120 ARPQIDLSRQNFANIFDQAVGYKLTPPFDPYSNTVNYLLASYVIPYVGLVGYVGTIPN---LVNCTSRSLVAGLLGVESG 196 (310)
Q Consensus 120 ~rP~iDls~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~v~E~VGvtAY~Gaap~---l~~~~~l~aAA~Il~VEA~ 196 (310)
..|.+.-- .++-..+.|....|..+.-.|.--...|.-.... ..++......-.|+..|..
T Consensus 64 g~~~~~~~----------------~~~~~~~~~~~~~l~~al~~E~~~~~~~~~l~~~A~~~~D~~~~~~l~~~l~~q~e 127 (156)
T cd01055 64 GRVELPAI----------------EAPPSEFESLLEVFEAALEHEQKVTESINNLVDLALEEKDYATFNFLQWFVKEQVE 127 (156)
T ss_pred CCeeCCCC----------------CCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHH
Confidence 11211100 0011134677788888888888877777654433 2334444444445555555
Q ss_pred hHHHHHHHHh
Q 021580 197 QDAVIRTLLY 206 (310)
Q Consensus 197 Haa~IRtlL~ 206 (310)
|...++.++.
T Consensus 128 ~~~~~~~~l~ 137 (156)
T cd01055 128 EEALARDILD 137 (156)
T ss_pred HHHHHHHHHH
Confidence 5544444443
No 39
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=47.93 E-value=24 Score=35.31 Aligned_cols=55 Identities=15% Similarity=0.165 Sum_probs=50.0
Q ss_pred HHHHHHHhhccchhHhhhcccccccC--ChhHHHHHHHHHHHhhhhHHHHHHHHhhh
Q 021580 154 VNYLLASYVIPYVGLVGYVGTIPNLV--NCTSRSLVAGLLGVESGQDAVIRTLLYER 208 (310)
Q Consensus 154 ~~FL~~A~v~E~VGvtAY~Gaap~l~--~~~~l~aAA~Il~VEA~Haa~IRtlL~~~ 208 (310)
.+||.-|-+=|--|---|+=....|. ||.+.+.-.=+.-.||||++.|+-.+..-
T Consensus 85 idFLerSctaEFSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df 141 (355)
T PRK13654 85 IDFLERSCTAEFSGFLLYKELSRRLKDRNPLLAELFQLMARDEARHAGFLNKAMKDF 141 (355)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHhccccCcHHHHHHHHHhhhHHHHhhhHHHHHHHc
Confidence 57999999999999999999999998 89999998888999999999999877653
No 40
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins.
Probab=47.40 E-value=30 Score=33.00 Aligned_cols=57 Identities=25% Similarity=0.253 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHHHHhhc-CCCCCcccccchhhHHHHHhhhcCCCCCCCC
Q 021580 90 DHTTYRIIEEFGYQEIGHLSRAIVTTVG-GFARPQIDLSRQNFANIFDQAVGYKLTPPFD 148 (310)
Q Consensus 90 ~~~v~~~~~eia~~E~~HV~~~L~~aLg-av~rP~iDls~~~F~~~~~~A~g~~l~p~Fd 148 (310)
|....++++.|..+|++|| ++=.+=+. -..+...|-. ..|-.+++.-+...+.+|||
T Consensus 180 D~~sa~iL~~I~~DEi~HV-~~G~rWf~~~c~~~~~~p~-~~f~~lv~~~~~~~~k~pfN 237 (253)
T PF04305_consen 180 DEESAAILEIILRDEIGHV-AIGNRWFRYLCEQRGLDPW-ETFRELVRQYFRGKLKGPFN 237 (253)
T ss_pred CHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHhccccHH-HHHHHHHHHhCCCCCCCCCC
Confidence 5678899999999999999 54222222 2222222221 35777877766677777876
No 41
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=46.98 E-value=57 Score=27.12 Aligned_cols=59 Identities=17% Similarity=0.043 Sum_probs=46.1
Q ss_pred CChhhHHhhHHHHHHHHHHHHHhhhhCCCCCccchhhhcCCCCCCCcccCCCCHHHHHHHHHHHHhHHHHHHHHHHHhhc
Q 021580 38 ANDKDLIQVALNLEFLETEFFLNGALGRGLDSIEPEMAAGGPPPTGASKANLDHTTYRIIEEFGYQEIGHLSRAIVTTVG 117 (310)
Q Consensus 38 ~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~~L~~aLg 117 (310)
.+-.++|+-++..|.-+..-|...+. .+ + .-=+..+.+.+..++.+|..|+ +.++.+|.
T Consensus 62 ~~~~~~le~a~~~E~~~~~~~~~~~~----------~A---------~-~egd~~~~~~~~~~~~~E~~H~-~~~~~~l~ 120 (123)
T cd01046 62 EDTKENLEMMLEGEAGANEGKKDAAT----------EA---------K-AEGLDEAHDFFHEAAKDEARHG-KMLKGLLE 120 (123)
T ss_pred ccHHHHHHHHHHhHHHHHHhHHHHHH----------HH---------H-HcCCHHHHHHHHHHHHHHHHHH-HHHHHHHh
Confidence 55689999999999999988865541 01 0 1125789999999999999999 99998774
No 42
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=46.78 E-value=25 Score=34.82 Aligned_cols=55 Identities=16% Similarity=0.147 Sum_probs=49.3
Q ss_pred HHHHHHHhhccchhHhhhcccccccCC--hhHHHHHHHHHHHhhhhHHHHHHHHhhh
Q 021580 154 VNYLLASYVIPYVGLVGYVGTIPNLVN--CTSRSLVAGLLGVESGQDAVIRTLLYER 208 (310)
Q Consensus 154 ~~FL~~A~v~E~VGvtAY~Gaap~l~~--~~~l~aAA~Il~VEA~Haa~IRtlL~~~ 208 (310)
.+||.-|-+=|--|---|+=....++| |.+.+.-.=+.-.||||++.|+-.+.+-
T Consensus 65 idFLerSctaEFSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df 121 (323)
T cd01047 65 LEFLERSCTSEFSGFLLYKELGRRLKNTNPVVAELFRLMARDEARHAGFLNKALSDF 121 (323)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHcccCCcHHHHHHHHHhhhHHHHhhhHHHHHHHc
Confidence 579999999999999999999999966 8888888888899999999999877653
No 43
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=45.43 E-value=1.6e+02 Score=23.52 Aligned_cols=132 Identities=16% Similarity=0.171 Sum_probs=91.1
Q ss_pred hhHHhhHHHHHHHHHHHHHhhhhCCCCCccchhhhcCCCCCCCcccCCCCHHHHHHHHHHHHhHHHHHHHHHHHhh---c
Q 021580 41 KDLIQVALNLEFLETEFFLNGALGRGLDSIEPEMAAGGPPPTGASKANLDHTTYRIIEEFGYQEIGHLSRAIVTTV---G 117 (310)
Q Consensus 41 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~~L~~aL---g 117 (310)
++.||-.+++|+--...|..-..- +. | .+ -+.+.+++++.+.+|..|. .-+..-+ |
T Consensus 1 i~~Ln~~l~~e~~~~~~y~~~~~~---------~~--~--------~~-~~~l~~~~~~~a~e~~~h~-~~l~e~i~~lg 59 (142)
T PF00210_consen 1 IEALNEQLALELQASQQYLNMHWN---------FD--G--------PN-FPGLAKFFQDQAEEEREHA-DELAERILMLG 59 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---------HH--S--------TT-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH---------hc--C--------CC-chhhHHHhHHHHHHHHHHH-HHHHHHHhcCC
Confidence 468999999999888888776420 11 1 11 1568899999999999999 6666554 3
Q ss_pred CCCCCcccccchhhHHHHHhhhcCCCCCCCCCCCChHHHHHHHhhccchhHhhhccccccc---CChhHHHHHHHHHHHh
Q 021580 118 GFARPQIDLSRQNFANIFDQAVGYKLTPPFDPYSNTVNYLLASYVIPYVGLVGYVGTIPNL---VNCTSRSLVAGLLGVE 194 (310)
Q Consensus 118 av~rP~iDls~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~v~E~VGvtAY~Gaap~l---~~~~~l~aAA~Il~VE 194 (310)
+.|.... ..+..+ + .|+= +.+...-|..+.-.|.-...-|....... .|+......-.++.-|
T Consensus 60 g~p~~~~----~~~~~~-------~-~~~~--~~~~~~~l~~~l~~e~~~~~~~~~l~~~a~~~~D~~t~~~~~~~l~~~ 125 (142)
T PF00210_consen 60 GKPSGSP----VEIPEI-------P-KPPE--WTDPREALEAALEDEKEIIEEYRELIKLAEKEGDPETADFLDEFLEEE 125 (142)
T ss_dssp S-SSTSH----HHHHHH-------H-SSSS--SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred CCCCCcH----HHhhhh-------h-cccc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 5454321 111111 0 0111 56888899999888999999998887776 5677778888888888
Q ss_pred hhhHHHHHHHHhh
Q 021580 195 SGQDAVIRTLLYE 207 (310)
Q Consensus 195 A~Haa~IRtlL~~ 207 (310)
..|.-.++..|..
T Consensus 126 ~~~~~~l~~~l~~ 138 (142)
T PF00210_consen 126 EKHIWMLQAHLTN 138 (142)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877764
No 44
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=41.60 E-value=77 Score=26.73 Aligned_cols=59 Identities=17% Similarity=0.103 Sum_probs=47.4
Q ss_pred CChhhHHhhHHHHHHHHHHHHHhhhhCCCCCccchhhhcCCCCCCCcccCCCCHHHHHHHHHHHHhHHHHHHHHHHHhhc
Q 021580 38 ANDKDLIQVALNLEFLETEFFLNGALGRGLDSIEPEMAAGGPPPTGASKANLDHTTYRIIEEFGYQEIGHLSRAIVTTVG 117 (310)
Q Consensus 38 ~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~~L~~aLg 117 (310)
.+-.++|.-+|++|.--.+-|..... .+. ..-|+.+.+++++|..+|+.|+ +.+++.++
T Consensus 79 ~~~~~~l~~al~~E~~~~~~~~~l~~----------~A~----------~~~D~~~~~~l~~~l~~q~e~~-~~~~~~l~ 137 (156)
T cd01055 79 ESLLEVFEAALEHEQKVTESINNLVD----------LAL----------EEKDYATFNFLQWFVKEQVEEE-ALARDILD 137 (156)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH----------HHH----------HcCCHhHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 34569999999999998888888752 110 1236789999999999999999 99999887
No 45
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=40.86 E-value=35 Score=33.95 Aligned_cols=55 Identities=16% Similarity=0.167 Sum_probs=48.1
Q ss_pred HHHHHHHhhccchhHhhhcccccccCChh--HHHHHHHHHHHhhhhHHHHHHHHhhh
Q 021580 154 VNYLLASYVIPYVGLVGYVGTIPNLVNCT--SRSLVAGLLGVESGQDAVIRTLLYER 208 (310)
Q Consensus 154 ~~FL~~A~v~E~VGvtAY~Gaap~l~~~~--~l~aAA~Il~VEA~Haa~IRtlL~~~ 208 (310)
.+||.-|-+=|--|---|+=....+.|++ +.+.-.=+.-.||||++.|+-.+.+-
T Consensus 75 idFLerScTaEFSGflLYKEl~rrlk~~~P~lae~F~~MaRDEARHAGFlNkam~df 131 (337)
T TIGR02029 75 IEFLERSCTSEFSGFLLYKELSRRLKNRDPVVAELFQLMARDEARHAGFLNKALGDF 131 (337)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHhcCCCChHHHHHHHHHhhhhHHHhhhHHHHHHHc
Confidence 57999999999999999999999996655 88888888889999999999877653
No 46
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=40.55 E-value=35 Score=34.17 Aligned_cols=55 Identities=13% Similarity=0.091 Sum_probs=48.9
Q ss_pred HHHHHHHhhccchhHhhhcccccccCC--hhHHHHHHHHHHHhhhhHHHHHHHHhhh
Q 021580 154 VNYLLASYVIPYVGLVGYVGTIPNLVN--CTSRSLVAGLLGVESGQDAVIRTLLYER 208 (310)
Q Consensus 154 ~~FL~~A~v~E~VGvtAY~Gaap~l~~--~~~l~aAA~Il~VEA~Haa~IRtlL~~~ 208 (310)
.+||.-|-+=|--|---|+=....|.| |.+.+.-.=+.-.||||++.|+-.+.+-
T Consensus 81 idFLerScTaEFSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df 137 (351)
T CHL00185 81 VEFLERSCTAEFSGFLLYKELSRKLKDKNPLLAEGFLLMSRDEARHAGFLNKAMSDF 137 (351)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHHhccCCcHHHHHHHHHhhhhHHHhhhHHHHHHHc
Confidence 579999999999999999999999955 8888888888889999999999877653
No 47
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=38.28 E-value=33 Score=34.34 Aligned_cols=54 Identities=13% Similarity=0.160 Sum_probs=48.4
Q ss_pred HHHHHHHhhccchhHhhhcccccccCC--hhHHHHHHHHHHHhhhhHHHHHHHHhh
Q 021580 154 VNYLLASYVIPYVGLVGYVGTIPNLVN--CTSRSLVAGLLGVESGQDAVIRTLLYE 207 (310)
Q Consensus 154 ~~FL~~A~v~E~VGvtAY~Gaap~l~~--~~~l~aAA~Il~VEA~Haa~IRtlL~~ 207 (310)
.+||.-|-+=|--|---|+=....|.| |.+.+.-.=+.-.||||++.|+-.+..
T Consensus 81 idFLerSctaEFSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~D 136 (357)
T PLN02508 81 IEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFTLMSRDEARHAGFLNKALSD 136 (357)
T ss_pred HHHHHhhhhhhcccchHHHHHHHhcccCChHHHHHHHHhCchhHHHHhHHHHHHHH
Confidence 579999999999999999999999955 888888888888999999999987765
No 48
>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]. It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process
Probab=35.49 E-value=78 Score=28.52 Aligned_cols=48 Identities=17% Similarity=0.058 Sum_probs=42.8
Q ss_pred hccchhHhhhcccccccC-ChhHHHHHHHHHHHhhhhHHHHHHHHhhhh
Q 021580 162 VIPYVGLVGYVGTIPNLV-NCTSRSLVAGLLGVESGQDAVIRTLLYERA 209 (310)
Q Consensus 162 v~E~VGvtAY~Gaap~l~-~~~~l~aAA~Il~VEA~Haa~IRtlL~~~~ 209 (310)
.-|.-.+.-|.|+.-.+. ++..+.....+...|..|-.+.+.++.+++
T Consensus 12 AGE~~A~~iY~gQ~~~~~~~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~ 60 (172)
T PF03232_consen 12 AGEVGAVRIYRGQLAVARRDPELRPFLKEMAEEEKDHLAWFEQLLPELR 60 (172)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHcC
Confidence 445556777999999999 999999999999999999999999999986
No 49
>PF11220 DUF3015: Protein of unknown function (DUF3015); InterPro: IPR021383 This bacterial family of proteins has no known function.
Probab=35.37 E-value=77 Score=27.94 Aligned_cols=63 Identities=24% Similarity=0.178 Sum_probs=46.6
Q ss_pred hhccchhHhhhcccccccCChhHHHHHHHHHHHhhhhHHHHHHHHhhhhhcccCCCcccHHHHHHHHHH
Q 021580 161 YVIPYVGLVGYVGTIPNLVNCTSRSLVAGLLGVESGQDAVIRTLLYERADQIVVPYKMTVAEFTDRISA 229 (310)
Q Consensus 161 ~v~E~VGvtAY~Gaap~l~~~~~l~aAA~Il~VEA~Haa~IRtlL~~~~~~~v~Py~~tV~~~t~~IS~ 229 (310)
..+|.+--=.-.|- =++|.+.+.+++|++.|.+.++..+.++-.+..+.-..|-.++.++|-+
T Consensus 69 ~n~d~La~DiA~G~------GE~L~ala~llgv~~~d~~~f~~~~q~nF~~if~s~~~t~~~v~~~i~~ 131 (144)
T PF11220_consen 69 SNMDNLAQDIARGQ------GEHLDALAELLGVPAEDRAAFGAVLQENFASIFPSESVTSEEVLDNIVA 131 (144)
T ss_pred HHHHHHHHHHHcCC------cchHHHHHHHhCCCHhhHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHH
Confidence 34444444444443 3578899999999999999999999999988877767777776666544
No 50
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=35.31 E-value=1.2e+02 Score=24.08 Aligned_cols=59 Identities=19% Similarity=0.170 Sum_probs=48.5
Q ss_pred CChhhHHhhHHHHHHHHHHHHHhhhhCCCCCccchhhhcCCCCCCCcccCCCCHHHHHHHHHHHHhHHHHHHHHHHHhhc
Q 021580 38 ANDKDLIQVALNLEFLETEFFLNGALGRGLDSIEPEMAAGGPPPTGASKANLDHTTYRIIEEFGYQEIGHLSRAIVTTVG 117 (310)
Q Consensus 38 ~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~~L~~aLg 117 (310)
.+-.++|+.+|..|.--.+.|..... .+. ..-|+.+.+++.++-.+|..|+ +.|++.|.
T Consensus 79 ~~~~~~l~~~l~~e~~~~~~~~~l~~----------~a~----------~~~D~~t~~~~~~~l~~~~~~~-~~l~~~l~ 137 (142)
T PF00210_consen 79 TDPREALEAALEDEKEIIEEYRELIK----------LAE----------KEGDPETADFLDEFLEEEEKHI-WMLQAHLT 137 (142)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHH----------HHH----------HTTSHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHH----------HHH----------hcCCHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 47789999999999999999988752 111 1137899999999999999999 99998775
No 51
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=31.56 E-value=76 Score=26.19 Aligned_cols=55 Identities=13% Similarity=-0.013 Sum_probs=48.4
Q ss_pred HHHHhhccchhHhhhcccccccCChhHHHHHHHHHHHhhhhHHHHHHHHhhhhhc
Q 021580 157 LLASYVIPYVGLVGYVGTIPNLVNCTSRSLVAGLLGVESGQDAVIRTLLYERADQ 211 (310)
Q Consensus 157 L~~A~v~E~VGvtAY~Gaap~l~~~~~l~aAA~Il~VEA~Haa~IRtlL~~~~~~ 211 (310)
+...+-.|.-|..-|.-.+....++..++.--.|...|-.|.-+++.++.+.+..
T Consensus 3 ~~~~~~~E~~~~~~Y~~la~~~~~~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~ 57 (125)
T cd01044 3 LRKFQKDEITEAAIYRKLAKREKDPENREILLKLAEDERRHAEFWKKFLGKRGVP 57 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 3455677888999999999999999999999999999999999999999887654
No 52
>PF11553 DUF3231: Protein of unknown function (DUF3231); InterPro: IPR021617 This bacterial family of proteins has no known function. ; PDB: 2RBD_B.
Probab=30.92 E-value=3.5e+02 Score=23.34 Aligned_cols=117 Identities=12% Similarity=0.144 Sum_probs=67.2
Q ss_pred CCChhhHHhhHHHHHHHHHHHHHhhhhCCCCCccchhhhcCCCCCCCcccCCCCHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 021580 37 EANDKDLIQVALNLEFLETEFFLNGALGRGLDSIEPEMAAGGPPPTGASKANLDHTTYRIIEEFGYQEIGHLSRAIVTTV 116 (310)
Q Consensus 37 ~~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~~L~~aL 116 (310)
+...+-.|=..+.-.|+.-+++..=. +.--|+.++.++++....-..|+ +.|++.+
T Consensus 15 ~~~Ei~~Lw~~~~~~~~~~~~~~~f~-----------------------~~~~D~dik~~l~~~~~~~~~~i-~~l~~ll 70 (166)
T PF11553_consen 15 NASEIGNLWNNYMANYMSICLLQYFL-----------------------QVAEDKDIKKLLKKGLDLSQKQI-EQLEKLL 70 (166)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HH---HHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHcCCHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 34455556566666666665554432 11237899999999999999999 9999999
Q ss_pred c--CCCCCc----ccccchhhHHHHHhhhcCCCCCCCCCCCChHHHHHHHhhccchhHhhhcccccccCChhHHHHHHHH
Q 021580 117 G--GFARPQ----IDLSRQNFANIFDQAVGYKLTPPFDPYSNTVNYLLASYVIPYVGLVGYVGTIPNLVNCTSRSLVAGL 190 (310)
Q Consensus 117 g--av~rP~----iDls~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~v~E~VGvtAY~Gaap~l~~~~~l~aAA~I 190 (310)
. ++|-|. -|.... + .++| +|...+.--+.+--.|+..|..+......++++..--..
T Consensus 71 ~~e~ip~P~~~~~~~v~~~--------~-----~~lf----sD~~~l~~~~~~~~~~~~~~~~al~~s~R~Dl~~~f~~~ 133 (166)
T PF11553_consen 71 KEEGIPVPPGFPESDVTDS--------A-----PPLF----SDKFMLFYISFMSQAGITNYGRALSSSVRNDLRAFFMKF 133 (166)
T ss_dssp HHTT-------------GG--------G-----S-G------HHHHHHHHHHHHHHHHHHHHHHHHH--SHHHHHHHHHH
T ss_pred HHcCCCCCCCCcccccCCC--------C-----CCCC----CcHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 7 666553 122110 0 0123 455555555566678999998888777777766655554
Q ss_pred HHHh
Q 021580 191 LGVE 194 (310)
Q Consensus 191 l~VE 194 (310)
+.-+
T Consensus 134 ~~~~ 137 (166)
T PF11553_consen 134 LMEA 137 (166)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 53
>PF12902 Ferritin-like: Ferritin-like; PDB: 3HL1_A.
Probab=30.89 E-value=1.7e+02 Score=27.41 Aligned_cols=53 Identities=17% Similarity=0.298 Sum_probs=38.7
Q ss_pred HhhHHHHHHHHHHHHHhhhhCCCCCccchhhhcCCCCCCCcccCCCCHHHHHHHHHHHHhHHHHHHHHHHHhhc
Q 021580 44 IQVALNLEFLETEFFLNGALGRGLDSIEPEMAAGGPPPTGASKANLDHTTYRIIEEFGYQEIGHLSRAIVTTVG 117 (310)
Q Consensus 44 LNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~~L~~aLg 117 (310)
||-|+.||+-=---|+.+.+- +. -..+..++..+++|+-+|.-|. ...-+.|.
T Consensus 1 Lq~Ai~lE~atip~YL~a~yS--i~------------------~~~~~~~~~~i~~V~~eEMlHl-~l~~Nll~ 53 (227)
T PF12902_consen 1 LQQAIELELATIPPYLTALYS--IK------------------PGTNEEARNLIRSVAIEEMLHL-SLAANLLN 53 (227)
T ss_dssp -HHHHHHHHHHHHHHHHHHHH--BS-------------------TTSH-HHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHcc--cC------------------CCcchhHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 678899999888889888752 21 1223458999999999999999 77665554
No 54
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=26.69 E-value=3.1e+02 Score=23.35 Aligned_cols=60 Identities=17% Similarity=0.170 Sum_probs=47.5
Q ss_pred CCChhhHHhhHHHHHHHHHHHHHhhhhCCCCCccchhhhcCCCCCCCcccCCCCHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 021580 37 EANDKDLIQVALNLEFLETEFFLNGALGRGLDSIEPEMAAGGPPPTGASKANLDHTTYRIIEEFGYQEIGHLSRAIVTTV 116 (310)
Q Consensus 37 ~~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~~L~~aL 116 (310)
..+-.+++..+|..|---.+.|..... ++ ..--|..+.++++.|-.+|..|. .+|++.|
T Consensus 80 ~~~~~e~l~~~l~~E~~~~~~~~e~i~----------~A----------~~~~D~~t~~ll~~~i~eee~h~-~~l~~~l 138 (157)
T TIGR00754 80 GETVREMLEADLALELDVLNRLKEAIA----------YA----------EEVRDYVSRDLLEEILEDEEEHI-DWLETQL 138 (157)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH----------HH----------HHcCCHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 345568899999999988899988752 01 01126789999999999999999 9999988
Q ss_pred c
Q 021580 117 G 117 (310)
Q Consensus 117 g 117 (310)
+
T Consensus 139 ~ 139 (157)
T TIGR00754 139 E 139 (157)
T ss_pred H
Confidence 6
No 55
>COG2941 CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzyme metabolism]
Probab=26.06 E-value=1.1e+02 Score=28.43 Aligned_cols=33 Identities=21% Similarity=0.150 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHHHHhhc-CCCCCc
Q 021580 90 DHTTYRIIEEFGYQEIGHLSRAIVTTVG-GFARPQ 123 (310)
Q Consensus 90 ~~~v~~~~~eia~~E~~HV~~~L~~aLg-av~rP~ 123 (310)
++..+-.++|.++||+.|. ....+-|- ---||.
T Consensus 69 ~~~~R~~l~em~d~E~~HL-~~f~~~l~e~~vRPs 102 (204)
T COG2941 69 SPEPRIQLKEMADEEIDHL-AWFEQRLLELGVRPS 102 (204)
T ss_pred CcchHHHHHHHHHHHHHHH-HHHHHHHHHccCCcc
Confidence 3466779999999999999 66665554 444564
No 56
>COG2193 Bfr Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism]
Probab=24.84 E-value=1.4e+02 Score=26.83 Aligned_cols=60 Identities=17% Similarity=0.213 Sum_probs=47.6
Q ss_pred CCChhhHHhhHHHHHHHHHHHHHhhhhCCCCCccchhhhcCCCCCCCcccCCCCHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 021580 37 EANDKDLIQVALNLEFLETEFFLNGALGRGLDSIEPEMAAGGPPPTGASKANLDHTTYRIIEEFGYQEIGHLSRAIVTTV 116 (310)
Q Consensus 37 ~~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~~L~~aL 116 (310)
..+-.++|+-=|++||--.+-|..+.. . .. ..-|...++.+.+|-.+|..|+ .+|++.|
T Consensus 80 G~tv~E~L~~DL~~E~~a~~~lk~~i~-----~-----~e----------~~~Dyvsrdl~~~iL~deEEHi-d~LetqL 138 (157)
T COG2193 80 GETVKEMLEADLALEYEARDALKEAIA-----Y-----CE----------EVQDYVSRDLLEEILADEEEHI-DWLETQL 138 (157)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH-----H-----HH----------hcccchHHHHHHHHHcchHHHH-HHHHHHH
Confidence 456789999999999988888888752 1 10 1125678999999999999999 9999987
Q ss_pred c
Q 021580 117 G 117 (310)
Q Consensus 117 g 117 (310)
+
T Consensus 139 ~ 139 (157)
T COG2193 139 D 139 (157)
T ss_pred H
Confidence 6
No 57
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A.
Probab=23.44 E-value=1e+02 Score=29.22 Aligned_cols=112 Identities=14% Similarity=0.104 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHHhHHHHHHHHHHHhhc--C----CCC-CcccccchhhHHHHHhhhcCCCCCCCCCCCChHHHHHHHh
Q 021580 89 LDHTTYRIIEEFGYQEIGHLSRAIVTTVG--G----FAR-PQIDLSRQNFANIFDQAVGYKLTPPFDPYSNTVNYLLASY 161 (310)
Q Consensus 89 l~~~v~~~~~eia~~E~~HV~~~L~~aLg--a----v~r-P~iDls~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~ 161 (310)
.+...+.++.+.-.+|.-|+ ....+.+. + ++. |.. ..+....+.... -+.+.....-++....
T Consensus 110 ~~~~~~~~~~~~i~DE~rH~-~mf~~~~~~~~~~~~l~~~~~~----~~~~~~~~~l~~-----~~~~~~~~~~~~~~~l 179 (304)
T PF11583_consen 110 PDDDAKRYALTEIADEARHS-LMFARAINRTGRRRGLAPLPPP----YPPRRLLRRLAR-----LLPPWERGLLFFAFAL 179 (304)
T ss_dssp T-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHTT----S------HHHHHHHHHHHT-----S-SHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhcCcccCCCC----CchHHHHHHHHH-----hcccccchHHHHHHHH
Confidence 45677888888888999999 66666554 2 111 110 112222222211 1222223445666677
Q ss_pred hccchhHhhhccccccc--CChhHHHHHHHHHHHhhhhHHHHHHHHhhhhhc
Q 021580 162 VIPYVGLVGYVGTIPNL--VNCTSRSLVAGLLGVESGQDAVIRTLLYERADQ 211 (310)
Q Consensus 162 v~E~VGvtAY~Gaap~l--~~~~~l~aAA~Il~VEA~Haa~IRtlL~~~~~~ 211 (310)
+.|.+ ++.|.-....= ..|-++++..-....|+||.++-|..+...-..
T Consensus 180 v~Ee~-i~~~~~~~~~D~~iqP~~r~v~~iH~~DEaRHi~f~~~~l~~~~~~ 230 (304)
T PF11583_consen 180 VAEEI-IDAYQREIARDETIQPLVRQVMRIHVRDEARHIAFAREELRRVWPR 230 (304)
T ss_dssp HHHHS-BHHHHHHHHT-SSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77776 56666433211 124455555555667999999999988765443
No 58
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=22.58 E-value=7.4e+02 Score=24.29 Aligned_cols=107 Identities=13% Similarity=0.078 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhc--CCCCCcccccchhhHHHHHhhhcCCCCCCCCCCCChHHHHHHHh-hccchhH
Q 021580 92 TTYRIIEEFGYQEIGHLSRAIVTTVG--GFARPQIDLSRQNFANIFDQAVGYKLTPPFDPYSNTVNYLLASY-VIPYVGL 168 (310)
Q Consensus 92 ~v~~~~~eia~~E~~HV~~~L~~aLg--av~rP~iDls~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~-v~E~VGv 168 (310)
........-...|..|- .+|++-|- +...|. .+.......++....|+++ .+. +...+| .|-..+.
T Consensus 94 ~w~~w~~~WtaEE~rHg-~aL~~YL~~sg~vdp~------~le~~~~~~~~~G~~~~~~--~~~--~~~~~y~~fqE~aT 162 (297)
T cd01050 94 AWARWVRRWTAEENRHG-DLLNKYLYLTGRVDPR------ALERTRQYLIGSGFDPGTD--NSP--YRGFVYTSFQELAT 162 (297)
T ss_pred HHHHHHHHHhHHHHHHH-HHHHHHHHHhCCCCHH------HHHHHHHHHHhCCCCCCCc--ccH--HHHHHHHHHHHHHH
Confidence 34455678888999999 99998875 222222 2222333334443333331 222 222222 2555666
Q ss_pred hhhcccc-ccc--CChhHHHHHHHHHHHhhhhHHHHHHHHhhhh
Q 021580 169 VGYVGTI-PNL--VNCTSRSLVAGLLGVESGQDAVIRTLLYERA 209 (310)
Q Consensus 169 tAY~Gaa-p~l--~~~~~l~aAA~Il~VEA~Haa~IRtlL~~~~ 209 (310)
..|.+.. ... .+|...++..-|.+.|+||-..-+.++.+--
T Consensus 163 ~v~y~nl~~~a~~gdPvL~~i~~~IA~DE~rH~~fy~~~v~~~l 206 (297)
T cd01050 163 RISHRNTARLAGAGDPVLAKLLGRIAADEARHEAFYRDIVEALF 206 (297)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666544 344 5788899999999999999999888766543
No 59
>PF01786 AOX: Alternative oxidase; InterPro: IPR002680 The alternative oxidase is used as a second terminal oxidase in the mitochondria, electrons are transferred directly from reduced ubiquinol to oxygen forming water []. This is not coupled to ATP synthesis and is not inhibited by cyanide, this pathway is a single step process []. In Oryza sativa (Rice) the transcript levels of the alternative oxidase are increased by low temperature []. It has been predicted to contain a coupled diiron centre on the basis of a conserved sequence motif consisting of the proposed iron ligands, four Glu and two His residues []. The EPR study of Arabidopsis thaliana (Mouse-ear cress) alternative oxidase AOX1a shows that the enzyme contains a hydroxo-bridged mixed-valent Fe(II)/Fe(III) binuclear iron centre []. A catalytic cycle has been proposed that involves diiron centre and at least one transient protein-derived radical, most probably an invariant Tyr residue [].; GO: 0007585 respiratory gaseous exchange, 0055114 oxidation-reduction process, 0005740 mitochondrial envelope
Probab=22.01 E-value=1e+02 Score=28.70 Aligned_cols=56 Identities=20% Similarity=0.202 Sum_probs=33.5
Q ss_pred HHHHHHHH---HHhhhhCCCCCccchhhhcCCCC-CCCcccCCC---CHHHHHHHHHHHHhHHHHHHHH
Q 021580 50 LEFLETEF---FLNGALGRGLDSIEPEMAAGGPP-PTGASKANL---DHTTYRIIEEFGYQEIGHLSRA 111 (310)
Q Consensus 50 LEyLEa~F---Y~~a~~G~gl~~~~~~l~~gGp~-p~g~~~a~l---~~~v~~~~~eia~~E~~HV~~~ 111 (310)
.+|||.+- |++-+ .+.+.+-...-|+ ++.-+.-++ +...++++..|+.||..|+ +.
T Consensus 139 vgylEeeAv~tYt~~l-----~di~~g~l~~~paP~iAi~Yw~l~~~~atlrDvi~~IRaDEa~Hr-~v 201 (207)
T PF01786_consen 139 VGYLEEEAVHTYTEFL-----EDIDEGKLPNMPAPEIAIDYWGLPELDATLRDVILAIRADEAEHR-DV 201 (207)
T ss_pred HHHHHHHHHHHHHHHH-----HHcccCCCCCCCCCHHHHHHhCCCccCchHHHHHHHHHhhHHHHH-Hh
Confidence 47888765 55554 2222221113343 333222334 3489999999999999999 53
No 60
>COG2193 Bfr Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism]
Probab=21.10 E-value=6.2e+02 Score=22.84 Aligned_cols=129 Identities=20% Similarity=0.170 Sum_probs=89.5
Q ss_pred ChhhHHhhHHHHHHHHH-HHHHhhhhCCCCCccchhhhcCCCCCCCcccCCCCHHHHHHHHHHHHhHHHHHHHHHHHhhc
Q 021580 39 NDKDLIQVALNLEFLET-EFFLNGALGRGLDSIEPEMAAGGPPPTGASKANLDHTTYRIIEEFGYQEIGHLSRAIVTTVG 117 (310)
Q Consensus 39 ~D~diLNFALnLEyLEa-~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~~L~~aLg 117 (310)
.-++.||=+|.+|---- +||.++-.- ..+ +++ ...+....=+.+|..|..+.+..-|.
T Consensus 6 ~Vi~~LN~~L~~EL~ainQYflHsrM~----------~~W----------G~~-~L~~~~~~esi~Em~HAd~lieRIlf 64 (157)
T COG2193 6 KVIRLLNEALGLELAAINQYFLHSRMY----------KNW----------GLT-KLAAHEYHESIEEMKHADQLIERILF 64 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------hCc----------ChH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34788999999997664 777777531 111 122 23444555567899999666666655
Q ss_pred --CCCCCcccccchhhHHHHHhhhcCCCCCCCCCCCChHHHHHHHhhccchhHhhhcccccccC---ChhHHHHHHHHHH
Q 021580 118 --GFARPQIDLSRQNFANIFDQAVGYKLTPPFDPYSNTVNYLLASYVIPYVGLVGYVGTIPNLV---NCTSRSLVAGLLG 192 (310)
Q Consensus 118 --av~rP~iDls~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~v~E~VGvtAY~Gaap~l~---~~~~l~aAA~Il~ 192 (310)
+.|.=+ ++. +--.=.+....|-..-..|.-+..+|+-+..... ++.++.+-.-||.
T Consensus 65 LeG~Pnlq-~~~------------------~l~iG~tv~E~L~~DL~~E~~a~~~lk~~i~~~e~~~Dyvsrdl~~~iL~ 125 (157)
T COG2193 65 LEGLPNLQ-DLG------------------KLRIGETVKEMLEADLALEYEARDALKEAIAYCEEVQDYVSRDLLEEILA 125 (157)
T ss_pred ccCCCCcc-ccc------------------ccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHc
Confidence 666311 000 0112257888999999999999999998877654 5778999999999
Q ss_pred HhhhhHHHHHHHHhh
Q 021580 193 VESGQDAVIRTLLYE 207 (310)
Q Consensus 193 VEA~Haa~IRtlL~~ 207 (310)
-|-.|.-|+-+.|.-
T Consensus 126 deEEHid~LetqL~l 140 (157)
T COG2193 126 DEEEHIDWLETQLDL 140 (157)
T ss_pred chHHHHHHHHHHHHH
Confidence 999999999887654
No 61
>PRK13456 DNA protection protein DPS; Provisional
Probab=20.59 E-value=3.4e+02 Score=25.02 Aligned_cols=57 Identities=25% Similarity=0.268 Sum_probs=47.7
Q ss_pred hhhHHhhHHHHHHHHHHHHHhhhhCCCCCccchhhhcCCCCCCCcccCCCCHHHHHHHHHHHHhHHHHHHHHHHHhhcC
Q 021580 40 DKDLIQVALNLEFLETEFFLNGALGRGLDSIEPEMAAGGPPPTGASKANLDHTTYRIIEEFGYQEIGHLSRAIVTTVGG 118 (310)
Q Consensus 40 D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~~L~~aLga 118 (310)
=.++|+-.|.-|--.-+-|..-.. .+ .+.||.+++++.+|-.+|..|- +-+++.|++
T Consensus 108 v~~mL~~~L~AEr~AI~~Y~eii~----------~~-----------~~kDp~T~~l~~~IL~dE~eH~-~dl~~lL~~ 164 (186)
T PRK13456 108 PKEILKVLLEAERCAIRTYTEICD----------MT-----------AGKDPRTYDLALAILQEEIEHE-AWFSELLGG 164 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HH-----------hcCCccHHHHHHHHHHHHHHHH-HHHHHHHhc
Confidence 367999999999988899988752 11 1357889999999999999999 999999983
No 62
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=20.59 E-value=60 Score=32.98 Aligned_cols=63 Identities=21% Similarity=0.168 Sum_probs=49.9
Q ss_pred CCCCCCChHHHHHHHhhc-c---chhHhhhcccccccCC---hhHHHHHHHHHHHhhhhHHHHHHHHhhhh
Q 021580 146 PFDPYSNTVNYLLASYVI-P---YVGLVGYVGTIPNLVN---CTSRSLVAGLLGVESGQDAVIRTLLYERA 209 (310)
Q Consensus 146 ~FdPy~n~~~FL~~A~v~-E---~VGvtAY~Gaap~l~~---~~~l~aAA~Il~VEA~Haa~IRtlL~~~~ 209 (310)
+-|||.++.-|+-+|..- . .+++|| ...+|+-.+ +..++-.+.++-.|-+|.--||.+++-..
T Consensus 126 DiDPFGSPaPFlDaA~~s~~~~G~l~vTA-TD~a~L~G~~p~~c~rkY~a~~~~~~~~hE~glR~Lig~va 195 (380)
T COG1867 126 DIDPFGSPAPFLDAALRSVRRGGLLCVTA-TDTAPLCGSYPRKCRRKYGAVPLKTEFCHEVGLRILIGYVA 195 (380)
T ss_pred ecCCCCCCchHHHHHHHHhhcCCEEEEEe-cccccccCCChHHHHHHhccccCCCcchhHHHHHHHHHHHH
Confidence 468999999999987543 3 466666 455677766 66788999999999999999999998543
No 63
>PF05974 DUF892: Domain of unknown function (DUF892); InterPro: IPR010287 This domain is found in several hypothetical bacterial proteins of unknown function.; PDB: 4ERU_B 3OGH_A 2GS4_B 2GYQ_B 3HIU_A.
Probab=20.28 E-value=2.2e+02 Score=24.79 Aligned_cols=112 Identities=13% Similarity=0.084 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHHHHhhc--CCCCCcccccc-hhhHHHHHhhhcCCCCCCCCCCCChHHHHHHHhhccch
Q 021580 90 DHTTYRIIEEFGYQEIGHLSRAIVTTVG--GFARPQIDLSR-QNFANIFDQAVGYKLTPPFDPYSNTVNYLLASYVIPYV 166 (310)
Q Consensus 90 ~~~v~~~~~eia~~E~~HV~~~L~~aLg--av~rP~iDls~-~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~v~E~V 166 (310)
+|..++.+++-..+...|+ +-|+..+. +.......|.. ..+-+-++...+.. .=||-.-+...+.+++.+|..
T Consensus 33 ~~~L~~~l~~h~~eT~~q~-~rLe~~~~~lg~~p~~~~c~~~~gl~~e~~~~~~~~---~~d~~~~D~~li~a~q~~ehy 108 (159)
T PF05974_consen 33 SPELKAALEEHLEETEQQI-ERLEQIFEALGADPSAEKCDAMEGLVAEAQELIEEF---AEDPAVKDAALIAAAQKVEHY 108 (159)
T ss_dssp SHHHHHHHHHHHHHHHHHH-HHHHHHHHHTTS-S-CHH-HHHHHHHHHHHHHHHT----S-SHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH-HHHHHHHHHccCCCccCcchHHHHHHHHHHHHHhcc---cCCchHhhHHHHHHHHHHHHH
Confidence 4889999999999999999 99998876 22111121110 12222222222221 123334455667789999999
Q ss_pred hHhhhcccc---cccCChhHHHHHHHHHHHhhhhHHHHHHHH
Q 021580 167 GLVGYVGTI---PNLVNCTSRSLVAGLLGVESGQDAVIRTLL 205 (310)
Q Consensus 167 GvtAY~Gaa---p~l~~~~~l~aAA~Il~VEA~Haa~IRtlL 205 (310)
...+|.... ..+..++..++.-..|.=|-..+.+++.+.
T Consensus 109 eIA~Y~tL~~~A~~lG~~e~a~lL~~~L~EE~~~~~~L~~~a 150 (159)
T PF05974_consen 109 EIAAYGTLIALAKQLGDEEAAQLLEQNLDEEEAADEKLTQLA 150 (159)
T ss_dssp HHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999997543 345555566666666666666666665544
No 64
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=20.18 E-value=4.9e+02 Score=21.36 Aligned_cols=57 Identities=19% Similarity=0.198 Sum_probs=45.8
Q ss_pred CCChhhHHhhHHHHHHHHHHHHHhhhhCCCCCccchhhhcCCCCCCCcccCCCCHHHHHHHHHHHHhHHHHHHHHHHHh
Q 021580 37 EANDKDLIQVALNLEFLETEFFLNGALGRGLDSIEPEMAAGGPPPTGASKANLDHTTYRIIEEFGYQEIGHLSRAIVTT 115 (310)
Q Consensus 37 ~~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~~L~~a 115 (310)
..+..++|.-++..|..-.+.|..... ++. . -|..+++++.+|-.+|..|+ +-++..
T Consensus 91 ~~~~~~~l~~~~~~e~~~i~~~~~~~~----------~a~----------~-~D~~t~~ll~~~l~de~~h~-~~~~~~ 147 (148)
T cd01052 91 PPDVKGILKVNLKAERCAIKVYKELCD----------MTH----------G-KDPVTYDLALAILNEEIEHE-EDLEEL 147 (148)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHH----------HHc----------C-CChHHHHHHHHHHHHHHHHH-HHHHhh
Confidence 446788999999999999999998862 110 1 37789999999999999999 877754
Done!