Query 021582
Match_columns 310
No_of_seqs 162 out of 368
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 04:07:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021582.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021582hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02902 pantothenate kinase 100.0 1.9E-66 4.1E-71 536.0 27.6 293 4-308 494-816 (876)
2 KOG4584 Uncharacterized conser 100.0 1.1E-64 2.4E-69 467.2 25.9 289 11-308 5-296 (348)
3 COG1578 Uncharacterized conser 100.0 2.3E-49 4.9E-54 362.1 19.4 230 46-307 1-231 (285)
4 PF01937 DUF89: Protein of unk 100.0 5.3E-40 1.2E-44 317.8 18.5 252 48-307 1-291 (355)
5 KOG3870 Uncharacterized conser 99.5 2.7E-13 5.9E-18 130.8 15.7 172 100-275 120-303 (434)
6 COG1737 RpiR Transcriptional r 76.9 66 0.0014 30.2 13.1 123 117-250 90-213 (281)
7 PRK11557 putative DNA-binding 76.7 34 0.00073 31.7 10.9 124 116-250 87-211 (278)
8 PRK07535 methyltetrahydrofolat 72.9 41 0.00089 31.5 10.4 151 136-301 13-173 (261)
9 PRK15482 transcriptional regul 55.7 1.7E+02 0.0038 27.1 11.3 123 117-250 95-218 (285)
10 PF03033 Glyco_transf_28: Glyc 54.7 15 0.00033 29.7 3.4 36 216-252 2-37 (139)
11 PRK06924 short chain dehydroge 50.5 1E+02 0.0022 27.3 8.4 34 213-251 2-35 (251)
12 COG0062 Uncharacterized conser 47.1 44 0.00096 30.4 5.4 36 212-252 49-87 (203)
13 PF00070 Pyr_redox: Pyridine n 44.4 87 0.0019 23.0 6.0 40 229-270 11-50 (80)
14 KOG0385 Chromatin remodeling c 43.0 17 0.00038 39.3 2.5 59 181-247 435-493 (971)
15 PRK02947 hypothetical protein; 42.5 1.5E+02 0.0032 27.3 8.4 38 211-250 105-142 (246)
16 PRK11543 gutQ D-arabinose 5-ph 42.0 2.5E+02 0.0054 26.4 10.0 107 135-250 17-125 (321)
17 cd01079 NAD_bind_m-THF_DH NAD 40.5 1E+02 0.0022 27.9 6.7 76 212-293 62-159 (197)
18 COG0373 HemA Glutamyl-tRNA red 39.0 1.6E+02 0.0035 29.7 8.5 82 212-306 178-263 (414)
19 PF06838 Met_gamma_lyase: Meth 38.9 17 0.00037 36.1 1.6 73 149-222 107-198 (403)
20 cd05212 NAD_bind_m-THF_DH_Cycl 38.8 97 0.0021 26.3 6.0 68 212-293 28-103 (140)
21 COG0569 TrkA K+ transport syst 38.7 45 0.00098 30.3 4.2 58 228-298 11-83 (225)
22 cd01080 NAD_bind_m-THF_DH_Cycl 38.0 1.1E+02 0.0024 26.6 6.4 44 212-268 44-87 (168)
23 cd03784 GT1_Gtf_like This fami 37.8 50 0.0011 31.8 4.6 37 214-251 2-38 (401)
24 PRK07231 fabG 3-ketoacyl-(acyl 37.7 55 0.0012 28.8 4.6 34 213-251 6-39 (251)
25 PF07592 DDE_Tnp_ISAZ013: Rhod 36.9 38 0.00083 32.8 3.5 58 195-253 162-232 (311)
26 PRK12829 short chain dehydroge 36.2 76 0.0016 28.2 5.3 35 212-251 11-45 (264)
27 PRK05653 fabG 3-ketoacyl-(acyl 35.7 57 0.0012 28.4 4.3 34 213-251 6-39 (246)
28 PLN03050 pyridoxine (pyridoxam 34.6 1.1E+02 0.0025 28.3 6.3 32 213-248 61-94 (246)
29 cd03808 GT1_cap1E_like This fa 33.6 54 0.0012 29.3 3.9 39 214-253 1-39 (359)
30 PRK13963 unkown domain/putativ 33.4 1.5E+02 0.0033 28.0 6.8 66 49-121 193-258 (258)
31 PRK14175 bifunctional 5,10-met 32.7 1.3E+02 0.0028 28.8 6.4 68 212-293 158-233 (286)
32 PRK06398 aldose dehydrogenase; 32.5 1.4E+02 0.003 26.9 6.4 52 213-269 7-66 (258)
33 PF04127 DFP: DNA / pantothena 32.5 1.3E+02 0.0029 26.6 6.1 58 215-275 20-85 (185)
34 cd08173 Gro1PDH Sn-glycerol-1- 32.4 92 0.002 29.9 5.5 49 212-268 25-73 (339)
35 PRK06138 short chain dehydroge 32.1 68 0.0015 28.3 4.2 35 213-252 6-40 (252)
36 cd00423 Pterin_binding Pterin 31.5 4E+02 0.0087 24.5 9.4 133 152-295 27-179 (258)
37 PRK07454 short chain dehydroge 31.4 68 0.0015 28.3 4.1 34 213-251 7-40 (241)
38 PRK00016 metal-binding heat sh 31.3 1.2E+02 0.0025 26.3 5.4 68 49-123 91-158 (159)
39 PRK07649 para-aminobenzoate/an 31.3 1.3E+02 0.0029 26.6 5.9 29 216-248 2-30 (195)
40 TIGR00644 recJ single-stranded 31.1 1.7E+02 0.0037 30.2 7.5 56 192-248 32-89 (539)
41 PRK06774 para-aminobenzoate sy 31.0 1.4E+02 0.003 26.1 6.0 55 216-294 2-56 (191)
42 TIGR03385 CoA_CoA_reduc CoA-di 30.9 1.5E+02 0.0033 29.0 6.9 64 199-268 124-187 (427)
43 PRK00676 hemA glutamyl-tRNA re 30.9 1.5E+02 0.0033 29.0 6.6 71 212-302 174-250 (338)
44 COG0505 CarA Carbamoylphosphat 30.3 1.1E+02 0.0024 30.3 5.6 68 212-308 179-246 (368)
45 PRK07806 short chain dehydroge 30.3 87 0.0019 27.6 4.6 35 212-251 6-40 (248)
46 cd06167 LabA_like LabA_like pr 30.2 1E+02 0.0023 25.3 4.8 33 212-250 100-132 (149)
47 PRK07577 short chain dehydroge 30.1 90 0.002 27.2 4.7 34 213-251 4-37 (234)
48 PRK05854 short chain dehydroge 29.9 74 0.0016 29.9 4.3 35 212-251 14-48 (313)
49 PRK09754 phenylpropionate diox 29.8 1.5E+02 0.0033 28.8 6.6 63 197-267 131-193 (396)
50 PRK11070 ssDNA exonuclease Rec 29.8 1.4E+02 0.0031 31.3 6.7 72 192-264 47-125 (575)
51 cd05013 SIS_RpiR RpiR-like pro 29.7 2.7E+02 0.0058 21.8 7.1 55 194-250 42-96 (139)
52 PRK09423 gldA glycerol dehydro 29.6 1.1E+02 0.0023 29.9 5.4 41 213-255 30-71 (366)
53 PRK05912 tyrosyl-tRNA syntheta 29.5 5E+02 0.011 26.0 10.2 70 186-257 6-82 (408)
54 PF05226 CHASE2: CHASE2 domain 29.5 1.6E+02 0.0035 27.5 6.5 64 185-249 51-117 (310)
55 PF08328 ASL_C: Adenylosuccina 29.4 46 0.001 27.6 2.4 42 102-144 54-95 (115)
56 PRK04965 NADH:flavorubredoxin 29.0 1.6E+02 0.0034 28.4 6.5 58 199-264 130-187 (377)
57 PF13460 NAD_binding_10: NADH( 28.8 82 0.0018 26.4 4.0 25 228-253 10-34 (183)
58 PRK06139 short chain dehydroge 28.7 2E+02 0.0044 27.4 7.2 35 213-252 8-42 (330)
59 cd00740 MeTr MeTr subgroup of 28.3 4.9E+02 0.011 24.2 11.0 133 152-296 29-172 (252)
60 PF13477 Glyco_trans_4_2: Glyc 27.9 84 0.0018 25.0 3.8 36 214-253 1-36 (139)
61 TIGR00514 accC acetyl-CoA carb 27.8 67 0.0014 32.1 3.7 30 213-248 3-32 (449)
62 PLN00016 RNA-binding protein; 27.6 1E+02 0.0022 29.8 4.9 40 212-252 52-91 (378)
63 PTZ00272 heat shock protein 83 27.6 7E+02 0.015 27.0 11.4 111 118-248 379-494 (701)
64 TIGR03127 RuMP_HxlB 6-phospho 27.4 1.3E+02 0.0027 25.8 5.0 37 212-250 72-108 (179)
65 PRK05670 anthranilate synthase 27.3 95 0.0021 27.1 4.3 30 216-249 2-31 (189)
66 PRK05786 fabG 3-ketoacyl-(acyl 27.3 96 0.0021 27.1 4.3 35 212-251 5-39 (238)
67 PRK08213 gluconate 5-dehydroge 27.2 75 0.0016 28.4 3.7 36 212-252 12-47 (259)
68 PF03853 YjeF_N: YjeF-related 26.7 98 0.0021 26.7 4.2 31 212-246 25-57 (169)
69 PRK12826 3-ketoacyl-(acyl-carr 26.4 1E+02 0.0022 27.0 4.3 34 212-250 6-39 (251)
70 COG0326 HtpG Molecular chapero 26.4 6.8E+02 0.015 26.7 10.8 115 114-247 336-456 (623)
71 COG2910 Putative NADH-flavin r 26.3 96 0.0021 28.3 4.0 25 229-254 13-37 (211)
72 PRK07904 short chain dehydroge 26.2 87 0.0019 28.3 3.9 36 212-252 8-44 (253)
73 PRK12937 short chain dehydroge 26.1 95 0.0021 27.2 4.1 36 212-252 5-40 (245)
74 PRK09860 putative alcohol dehy 26.0 1.5E+02 0.0032 29.1 5.8 65 197-268 16-83 (383)
75 PRK08703 short chain dehydroge 25.9 1.1E+02 0.0025 26.8 4.6 36 212-252 6-41 (239)
76 cd03816 GT1_ALG1_like This fam 25.9 1.2E+02 0.0026 29.7 5.1 40 212-252 3-42 (415)
77 cd03802 GT1_AviGT4_like This f 25.9 1.1E+02 0.0024 27.8 4.6 37 214-252 2-47 (335)
78 PRK06914 short chain dehydroge 25.8 1E+02 0.0022 27.9 4.3 34 213-251 4-37 (280)
79 PLN02335 anthranilate synthase 25.6 2.2E+02 0.0047 25.8 6.4 59 211-294 17-75 (222)
80 TIGR00234 tyrS tyrosyl-tRNA sy 25.5 4.2E+02 0.0092 26.1 8.9 88 199-291 19-121 (377)
81 PRK00726 murG undecaprenyldiph 25.5 1E+02 0.0022 29.0 4.4 38 213-251 2-39 (357)
82 PRK07326 short chain dehydroge 25.3 1.2E+02 0.0025 26.5 4.5 34 213-251 7-40 (237)
83 PRK08628 short chain dehydroge 25.1 99 0.0021 27.5 4.1 35 213-252 8-42 (258)
84 CHL00197 carA carbamoyl-phosph 25.1 1.6E+02 0.0035 29.3 5.8 55 214-295 193-247 (382)
85 PRK12367 short chain dehydroge 25.0 3.1E+02 0.0067 24.8 7.4 35 212-251 14-48 (245)
86 KOG1208 Dehydrogenases with di 24.9 1.1E+02 0.0025 29.4 4.6 35 212-251 35-69 (314)
87 PRK12825 fabG 3-ketoacyl-(acyl 24.8 1.1E+02 0.0024 26.6 4.2 33 213-250 7-39 (249)
88 COG1454 EutG Alcohol dehydroge 24.7 2E+02 0.0043 28.7 6.3 49 199-249 16-65 (377)
89 TIGR00344 alaS alanine--tRNA l 24.7 6.6E+02 0.014 27.8 10.8 50 91-141 294-345 (851)
90 PRK05557 fabG 3-ketoacyl-(acyl 24.5 1.1E+02 0.0024 26.6 4.2 35 213-252 6-40 (248)
91 TIGR01829 AcAcCoA_reduct aceto 24.4 1.1E+02 0.0024 26.6 4.2 31 214-249 2-32 (242)
92 PRK12743 oxidoreductase; Provi 24.4 1.1E+02 0.0023 27.4 4.1 33 213-250 3-35 (256)
93 PRK07060 short chain dehydroge 24.4 1.1E+02 0.0025 26.7 4.3 35 212-251 9-43 (245)
94 TIGR01832 kduD 2-deoxy-D-gluco 24.4 1.1E+02 0.0023 27.1 4.1 35 212-251 5-39 (248)
95 TIGR01133 murG undecaprenyldip 24.4 1E+02 0.0022 28.6 4.2 37 214-251 2-38 (348)
96 PF09840 DUF2067: Uncharacteri 24.4 1.4E+02 0.0029 26.9 4.7 70 233-304 91-162 (190)
97 PRK06196 oxidoreductase; Provi 24.4 1.1E+02 0.0023 28.6 4.3 35 212-251 26-60 (315)
98 KOG0020 Endoplasmic reticulum 24.3 1.5E+02 0.0033 30.8 5.5 54 192-248 513-566 (785)
99 PRK08591 acetyl-CoA carboxylas 24.2 88 0.0019 31.1 3.9 29 213-247 3-31 (451)
100 PRK07890 short chain dehydroge 24.2 1.3E+02 0.0028 26.6 4.6 34 213-251 6-39 (258)
101 PRK08264 short chain dehydroge 24.0 3E+02 0.0065 23.9 6.9 35 213-252 7-42 (238)
102 PF01936 NYN: NYN domain; Int 23.8 73 0.0016 25.8 2.7 42 212-264 96-137 (146)
103 PRK12939 short chain dehydroge 23.7 1.2E+02 0.0027 26.5 4.4 36 212-252 7-42 (250)
104 TIGR02415 23BDH acetoin reduct 23.6 1.2E+02 0.0025 26.8 4.2 34 213-251 1-34 (254)
105 cd01523 RHOD_Lact_B Member of 23.5 2.3E+02 0.0049 21.5 5.3 35 212-252 61-95 (100)
106 PRK06179 short chain dehydroge 23.4 4.7E+02 0.01 23.3 8.3 52 213-269 5-67 (270)
107 PRK06057 short chain dehydroge 23.2 1.1E+02 0.0024 27.2 4.0 36 212-252 7-42 (255)
108 PRK05693 short chain dehydroge 23.2 1.2E+02 0.0025 27.5 4.2 34 213-251 2-35 (274)
109 PRK08017 oxidoreductase; Provi 23.1 1.2E+02 0.0026 26.8 4.2 34 213-251 3-36 (256)
110 PRK05866 short chain dehydroge 23.1 1.1E+02 0.0025 28.3 4.2 34 213-251 41-74 (293)
111 PRK09135 pteridine reductase; 22.9 1.2E+02 0.0026 26.5 4.1 33 213-250 7-39 (249)
112 PLN02846 digalactosyldiacylgly 22.8 1.1E+02 0.0024 31.2 4.3 38 213-252 5-48 (462)
113 PRK07666 fabG 3-ketoacyl-(acyl 22.8 1.3E+02 0.0027 26.5 4.2 34 213-251 8-41 (239)
114 PF13528 Glyco_trans_1_3: Glyc 22.7 1.2E+02 0.0027 27.9 4.3 37 214-252 2-38 (318)
115 PF02093 Gag_p30: Gag P30 core 22.7 56 0.0012 29.9 1.9 21 42-62 101-121 (211)
116 COG4536 CorB Putative Mg2+ and 22.5 73 0.0016 31.9 2.7 106 112-238 213-320 (423)
117 PRK07775 short chain dehydroge 22.3 1.3E+02 0.0028 27.3 4.3 33 213-250 11-43 (274)
118 PRK14190 bifunctional 5,10-met 22.2 2.1E+02 0.0045 27.4 5.7 68 212-293 158-233 (284)
119 PRK06841 short chain dehydroge 22.1 1.4E+02 0.0031 26.4 4.5 34 213-251 16-49 (255)
120 PRK12429 3-hydroxybutyrate deh 22.1 1.3E+02 0.0029 26.4 4.3 34 213-251 5-38 (258)
121 PRK06197 short chain dehydroge 22.1 1.2E+02 0.0027 28.0 4.2 34 212-250 16-49 (306)
122 TIGR03206 benzo_BadH 2-hydroxy 22.0 1.3E+02 0.0028 26.4 4.2 35 212-251 3-37 (250)
123 PF13439 Glyco_transf_4: Glyco 22.0 96 0.0021 24.9 3.1 29 223-253 13-41 (177)
124 PRK09291 short chain dehydroge 21.9 2.8E+02 0.0061 24.4 6.4 34 213-251 3-36 (257)
125 PRK14194 bifunctional 5,10-met 21.9 2.2E+02 0.0048 27.5 5.9 68 212-293 159-234 (301)
126 PRK01710 murD UDP-N-acetylmura 21.7 2E+02 0.0043 28.8 5.8 44 199-251 4-47 (458)
127 PRK07102 short chain dehydroge 21.7 1.2E+02 0.0026 26.7 3.9 35 213-252 2-36 (243)
128 PRK08306 dipicolinate synthase 21.7 2.8E+02 0.0062 26.2 6.6 34 212-251 152-185 (296)
129 PRK08007 para-aminobenzoate sy 21.7 2.8E+02 0.006 24.3 6.1 55 216-294 2-56 (187)
130 PRK13512 coenzyme A disulfide 21.6 2.3E+02 0.005 28.1 6.3 52 198-255 134-185 (438)
131 PRK02261 methylaspartate mutas 21.6 4.4E+02 0.0096 22.0 7.1 61 233-310 74-135 (137)
132 PF00931 NB-ARC: NB-ARC domain 21.6 1.6E+02 0.0035 26.7 4.8 60 213-274 101-174 (287)
133 PRK06935 2-deoxy-D-gluconate 3 21.6 1.5E+02 0.0032 26.5 4.5 33 213-250 16-48 (258)
134 TIGR01830 3oxo_ACP_reduc 3-oxo 21.6 2E+02 0.0044 24.8 5.3 30 218-251 3-32 (239)
135 PF02441 Flavoprotein: Flavopr 21.5 2.1E+02 0.0046 23.3 5.0 35 213-249 1-35 (129)
136 PRK05650 short chain dehydroge 21.4 1.2E+02 0.0026 27.3 3.9 33 214-251 2-34 (270)
137 PRK09072 short chain dehydroge 21.3 1.5E+02 0.0032 26.6 4.5 34 213-251 6-39 (263)
138 PRK07478 short chain dehydroge 21.2 1.3E+02 0.0029 26.7 4.1 34 213-251 7-40 (254)
139 PRK12828 short chain dehydroge 21.2 1.6E+02 0.0034 25.5 4.5 33 213-250 8-40 (239)
140 TIGR00661 MJ1255 conserved hyp 21.1 1.3E+02 0.0027 28.4 4.1 36 214-251 1-37 (321)
141 PRK14188 bifunctional 5,10-met 21.1 2E+02 0.0044 27.6 5.4 67 212-293 158-233 (296)
142 PLN02583 cinnamoyl-CoA reducta 21.0 1.4E+02 0.003 27.7 4.3 33 213-250 7-39 (297)
143 PF13344 Hydrolase_6: Haloacid 21.0 79 0.0017 24.9 2.3 43 197-244 16-58 (101)
144 cd03794 GT1_wbuB_like This fam 21.0 1.3E+02 0.0027 27.3 3.9 36 214-251 1-41 (394)
145 PRK07453 protochlorophyllide o 21.0 1.4E+02 0.0031 27.8 4.4 34 212-250 6-39 (322)
146 PRK08177 short chain dehydroge 20.9 1.6E+02 0.0034 25.7 4.4 35 213-252 2-36 (225)
147 PF06967 Mo-nitro_C: Mo-depend 20.9 6.4 0.00014 30.7 -3.8 25 202-226 56-80 (84)
148 PRK06101 short chain dehydroge 20.9 1.4E+02 0.0029 26.5 4.1 32 214-250 3-34 (240)
149 PRK14189 bifunctional 5,10-met 20.9 1.6E+02 0.0035 28.1 4.7 68 212-293 158-233 (285)
150 PRK08251 short chain dehydroge 20.8 1.4E+02 0.003 26.3 4.1 34 213-251 3-36 (248)
151 smart00450 RHOD Rhodanese Homo 20.8 2.8E+02 0.0061 20.0 5.3 36 212-252 56-91 (100)
152 PF01380 SIS: SIS domain SIS d 20.8 1.3E+02 0.0029 23.6 3.6 62 187-250 27-89 (131)
153 PRK10624 L-1,2-propanediol oxi 20.7 2E+02 0.0044 28.1 5.5 59 201-266 19-80 (382)
154 COG0512 PabA Anthranilate/para 20.6 2.1E+02 0.0046 25.8 5.1 56 216-295 4-59 (191)
155 PRK07576 short chain dehydroge 20.6 1.5E+02 0.0032 26.8 4.3 34 213-251 10-43 (264)
156 TIGR02853 spore_dpaA dipicolin 20.6 3.1E+02 0.0067 25.9 6.6 83 212-301 151-251 (287)
157 PRK07856 short chain dehydroge 20.5 1.5E+02 0.0032 26.4 4.2 34 213-251 7-40 (252)
158 PRK08267 short chain dehydroge 20.5 1.2E+02 0.0027 27.0 3.7 35 213-252 2-36 (260)
159 PRK06182 short chain dehydroge 20.5 1.6E+02 0.0034 26.6 4.5 34 213-251 4-37 (273)
160 cd01335 Radical_SAM Radical SA 20.4 3.5E+02 0.0077 22.0 6.4 24 230-253 61-86 (204)
161 PRK00252 alaS alanyl-tRNA synt 20.4 7.8E+02 0.017 27.3 10.4 29 91-120 287-316 (865)
162 PF09883 DUF2110: Uncharacteri 20.3 84 0.0018 29.0 2.5 45 253-298 164-212 (225)
163 PRK06194 hypothetical protein; 20.3 1.5E+02 0.0032 26.9 4.3 33 213-250 7-39 (287)
164 PRK07832 short chain dehydroge 20.2 1.4E+02 0.0031 27.0 4.1 33 214-251 2-34 (272)
165 PRK07814 short chain dehydroge 20.1 1.6E+02 0.0035 26.4 4.5 35 212-251 10-44 (263)
No 1
>PLN02902 pantothenate kinase
Probab=100.00 E-value=1.9e-66 Score=535.97 Aligned_cols=293 Identities=34% Similarity=0.576 Sum_probs=264.9
Q ss_pred CCCCcCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCcchhhHHHHhhhcHHHHHHHhhcC-CCCCCHHHHHHHHHHHHHH
Q 021582 4 ESELVPFPLLPTPIETNYRACTIPYRFPTDNPKKPTRTEIAWLDLFLNSIPSFKKRAESD-PTVPDAHVRAEKFAQRYSE 82 (310)
Q Consensus 4 ~~~~~~~pll~~~~~~~y~p~t~d~~~~~~~~~~~~~~~~~w~~~~~~ci~c~~~qa~~~-~~~~~~~~~~~~~~~~~~~ 82 (310)
+++++|||||.||. +|.|||+||. +.++| +||++||.+++|.|.+||... +..+|+.+|+++|.++|.+
T Consensus 494 ~~~l~~~pLL~~~~--~Y~p~t~d~~--d~~~r------~yW~~~f~~~i~~~~~~A~~sq~~~~da~~ra~~F~~~y~~ 563 (876)
T PLN02902 494 VPTLEVFPLLADPK--TYEPNTIDLS--DQSER------EYWFKVLSEHLPDLVDKAVASEGGTDDAKRRGDAFARAFSA 563 (876)
T ss_pred ccccccccccCCCC--CCCCCcccCC--ccHHH------HHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 56799999999998 9999999995 22244 599999999999999999865 5778999999999999999
Q ss_pred HHHhccCCCCCCCCChhHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHh
Q 021582 83 ILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAG 162 (310)
Q Consensus 83 ~L~~l~~~p~~~~~~~~~r~~~~l~~~~~~~~g~~DPy~~~K~~~N~~Al~~~~~l~~~ld~~~~~~d~l~~alr~alaG 162 (310)
+|++++++|.+||.+.. +.+++++|+|++.+|++|||+++|+++|+.|++++|.++++++++. +++||.+++|+++||
T Consensus 564 ~L~~l~~~p~a~G~~~~-~~Ll~~rE~~Lre~Gf~DPY~~vK~~eN~~AL~llp~l~~~ld~~~-~edrL~~aVk~aiAG 641 (876)
T PLN02902 564 HLARLMEEPAAYGKLGL-ANLLELREECLREFHFVDAYRSIKQRENEASLAVLPDLLAELDSMT-EETRLLTLIEGVLAA 641 (876)
T ss_pred HHHHHHhCccccCCchH-HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHH
Confidence 99999999999999875 8999999999999999999999999999999999999999998766 468999999999999
Q ss_pred hhhhhcchhhhhhhccC-cccHHHHHhhhcCCCCCCCCHHHHHHHhcc------cCCCeEEEEecCCCcchhcchHHHHH
Q 021582 163 NIFDLGSAQLAEVFSKD-GMSFLASCQNLVPRPWVIDDLETFKVKWSK------KAWKKAVIFVDNSGADIILGILPFAR 235 (310)
Q Consensus 163 N~iD~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Dd~~~~~~~L~~------~~~k~ilyl~DNaGediVfD~Lpli~ 235 (310)
|+||||++..+++++.+ .+++++.+++++++||.+||++.|+++|.+ .+||+++||+||||+|||||+|||||
T Consensus 642 NifD~Ga~~~v~l~~~~~~~~~~~~~~~~~~rpw~iDD~d~f~erL~~~~~~~~~~~KkvLyf~DNAGaEIVLD~LpLiR 721 (876)
T PLN02902 642 NIFDWGSRACVELYHKGTIIEIYRMSRNKMQRPWRVDDFDAFKERMLGSGGKKPKPHKRALLFVDNSGADVVLGMLPLAR 721 (876)
T ss_pred hhhhhhhhhhhhhccccchhhHHHHHHHhhcCCCccCCHHHHHHHHhhcccccCCCccEEEEEecCCCCceecChHHHHH
Confidence 99999998776666554 367899999999999999999999999974 36899999999999779999999999
Q ss_pred HHHhCCCEEEEEecCCCccccCChHHHHHHHHHhhhhhhhcc-----C---------ccc--------cceEEecCCCCC
Q 021582 236 ELLRRGTQVILAANDLPSINDVTYPELIEIMSKLKDEKGQLM-----G---------VDT--------SKLLIANSGNDL 293 (310)
Q Consensus 236 ~L~~~g~~V~l~vk~~P~lNDaT~~d~~~~l~~~a~~~~~l~-----g---------l~~--------~~~~Vi~sG~~~ 293 (310)
+|+++|++|+++||+.|+|||||++|+..+++.++..|+.++ | +++ ++++||+||+++
T Consensus 722 ELl~rgtkV~lavng~PiINDvT~eDl~~~~~~~a~~~~~l~~A~~aG~~~~~~~~~ld~~~~~~~~~~~l~VV~SG~~s 801 (876)
T PLN02902 722 ELLRRGTEVVLVANSLPALNDVTAMELPDIVAEAAKHCDILRRAAEAGGLLVDAMVNTDDGSKDDSTSVPLMVVENGCGS 801 (876)
T ss_pred HHHHcCCEEEEEECCCCchhhhhHHHHHHHHHHHhhcccHHHHHHHhcccccccccccccccccccccceEEEEcCCCCC
Confidence 999999999999999999999999999999999888887764 2 332 368999999999
Q ss_pred CCCChhhhcHHHHhh
Q 021582 294 PVRNGSAAFYFLKSL 308 (310)
Q Consensus 294 pg~~l~~~s~~~~~~ 308 (310)
||+||+++|++|++.
T Consensus 802 PGidL~rvS~E~~~a 816 (876)
T PLN02902 802 PCIDLRQVSSELAAA 816 (876)
T ss_pred CCcChHHCCHHHHHH
Confidence 999999999888764
No 2
>KOG4584 consensus Uncharacterized conserved protein [General function prediction only]
Probab=100.00 E-value=1.1e-64 Score=467.17 Aligned_cols=289 Identities=57% Similarity=0.872 Sum_probs=268.1
Q ss_pred CCCCCCCCCCCCCCcccCCCCCCCCCCCCcchhhHHHHhhhcHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhccC
Q 021582 11 PLLPTPIETNYRACTIPYRFPTDNPKKPTRTEIAWLDLFLNSIPSFKKRAESDP-TVPDAHVRAEKFAQRYSEILEDMKK 89 (310)
Q Consensus 11 pll~~~~~~~y~p~t~d~~~~~~~~~~~~~~~~~w~~~~~~ci~c~~~qa~~~~-~~~~~~~~~~~~~~~~~~~L~~l~~ 89 (310)
+++++|. .|+|+|.|++ ..+|++.||++||.+.||.|.++|+++. ..+|+..|+++|.++|..+|..+++
T Consensus 5 ~~~~~~~--~y~p~t~d~~-------k~~~a~~~Wi~~f~~~ip~f~krA~asq~~~~DA~~RAe~F~~~y~~~Le~lk~ 75 (348)
T KOG4584|consen 5 NYRACTI--PYRFPTDDLN-------KDTPAEIYWINVFSNSIPSFKKRAEASQENVPDAPARAEKFAQRYAGILEDLKK 75 (348)
T ss_pred ccccCCC--CCCCCCCCcc-------ccchhhhHHHHHHHHHhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHh
Confidence 3555555 5666665554 5588899999999999999999998766 6999999999999999999999999
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHhhhhhhcc
Q 021582 90 DPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGS 169 (310)
Q Consensus 90 ~p~~~~~~~~~r~~~~l~~~~~~~~g~~DPy~~~K~~~N~~Al~~~~~l~~~ld~~~~~~d~l~~alr~alaGN~iD~g~ 169 (310)
+|.+||.||..+.+++++|+|++++||.|||+++|+++|..|++.+|.+.+.+|++.+.+.++++++|+.+||||||||+
T Consensus 76 ~P~a~G~~~~g~~Ll~lRE~~LrE~gF~Diy~kvK~~ENa~Aia~fP~vv~~lDal~dE~~Rle~LvrGilAGNiFDwGa 155 (348)
T KOG4584|consen 76 DPEAYGGPPLGINLLRLREQILRELGFRDIYKKVKDEENAKAIALFPQVVRLLDALEDEGTRLENLVRGILAGNIFDWGA 155 (348)
T ss_pred ChHhcCCCcchHHHHHHHHHHHHHhCCccHHHHHHHhhhhhHHHHhHHHHHHHhhhcchhHHHHHHHHHHHhcchhhhHH
Confidence 99999998876789999999999999999999999999999999999999999999987889999999999999999999
Q ss_pred hhhhhhhccC-cccHHHHHhhhcCCCCCCCCHHHHHHHhcccCCCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEe
Q 021582 170 AQLAEVFSKD-GMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAA 248 (310)
Q Consensus 170 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Dd~~~~~~~L~~~~~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~v 248 (310)
.+.+.+++.+ .|+|..+++++.+|||.+||++.|.+++.+.|||++++|+||||.|||||++||+|+|+++|++|++++
T Consensus 156 ~~~~~il~~~~~f~f~~a~~~l~~RPWl~D~ld~f~~r~~~~p~K~~lif~DNSG~DvILGilPf~Rellr~gt~vil~a 235 (348)
T KOG4584|consen 156 KAVVKILESASVFGFLAALQNLESRPWLVDDLDSFLARLKGKPHKCALIFVDNSGFDVILGILPFARELLRRGTEVILCA 235 (348)
T ss_pred HHHHHHHhccccchHHHHHhhhhcCCeeeccHHHHHHHhcCCCcceEEEEecCCCcceeeeecHHHHHHHhCCCeEEEEe
Confidence 9988888865 589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccCChHHHHHHHHHhhhhhhhcc-CccccceEEecCCCCCCCCChhhhcHHHHhh
Q 021582 249 NDLPSINDVTYPELIEIMSKLKDEKGQLM-GVDTSKLLIANSGNDLPVRNGSAAFYFLKSL 308 (310)
Q Consensus 249 k~~P~lNDaT~~d~~~~l~~~a~~~~~l~-gl~~~~~~Vi~sG~~~pg~~l~~~s~~~~~~ 308 (310)
++.|++||+|+.|+..++++++..|+.+. +++.+.+.|+.||+.+||+||+++|+++-.+
T Consensus 236 ns~palNdvt~~el~~l~~~~~~~~~~l~~~~~~~~ll~~~~G~~~pciDlrrvsqeLa~l 296 (348)
T KOG4584|consen 236 NSSPALNDVTYSELKELAAELANDCNVLLKAIDTGQLLVVQNGQDSPCIDLRRVSQELAYL 296 (348)
T ss_pred cCcchhccccHHHHHHHHHhhccCChHHHHHhhhcceEEeecCCCCceeeHHhhhHHHHHH
Confidence 99999999999999999999999998866 5998999999999999999999999987543
No 3
>COG1578 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.3e-49 Score=362.10 Aligned_cols=230 Identities=17% Similarity=0.247 Sum_probs=206.9
Q ss_pred HHHhhhcHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhccCCCCCCCCChhHHHHHHHHHHHHHHcCCccchHHHH
Q 021582 46 LDLFLNSIPSFKKRAESDP-TVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVK 124 (310)
Q Consensus 46 ~~~~~~ci~c~~~qa~~~~-~~~~~~~~~~~~~~~~~~~L~~l~~~p~~~~~~~~~r~~~~l~~~~~~~~g~~DPy~~~K 124 (310)
|++-++|.+|+++|+.... ..++++++..+.++..++.|.+... ....|+ +.++.+|+.+++.+|.+|||++.|
T Consensus 1 mk~~p~C~~C~l~q~~~~~~~~t~ded~~~~~~~~~~~lls~~y~---~~~~~a--~~~t~ihr~v~k~~g~eDPyke~K 75 (285)
T COG1578 1 MKASPECLPCLLRQAVNAVKLATDDEDLRSRIMSEALKLLSEEYG---ESAVPA--IAGTLIHREVYKILGNEDPYKEYK 75 (285)
T ss_pred CCCcccchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhC---cCCCcH--HHHHHHHHHHHHHcCCCCcHHHHH
Confidence 4677899999999999877 7777788888999999999987531 122222 589999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHhhhhhhcchhhhhhhccCcccHHHHHhhhcCCCCCCCCHHHHH
Q 021582 125 DEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFK 204 (310)
Q Consensus 125 ~~~N~~Al~~~~~l~~~ld~~~~~~d~l~~alr~alaGN~iD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dd~~~~~ 204 (310)
+++|+.|++++|.+++.+ ++..++|++|+++|++||+||||+.++. .+++++.+.++++.++.+||++.|.
T Consensus 76 ~r~NeiA~~vl~~vr~~~---~~~~~dl~~Avk~ai~GN~iDfgv~G~~------~~~lee~~~~~~~~~l~i~d~~k~~ 146 (285)
T COG1578 76 RRANEIALKVLPKVRENI---EDTPEDLKTAVKLAIVGNVIDFGVLGFS------PFDLEEEVEKLLDAELYIDDSPKLL 146 (285)
T ss_pred HHHHHHHHHHHHHHHhcc---cCChHHHHHHHHHHHHhcceeeccccCC------HhHHHHHHHHhhcCcccccchHHHH
Confidence 999999999999999965 4445789999999999999999998632 4789999999999999999999999
Q ss_pred HHhcccCCCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCCccccCChHHHHHHHHHhhhhhhhccCccccce
Q 021582 205 VKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIMSKLKDEKGQLMGVDTSKL 284 (310)
Q Consensus 205 ~~L~~~~~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~P~lNDaT~~d~~~~l~~~a~~~~~l~gl~~~~~ 284 (310)
++|++ + +|+|++||||| |+||++ |++.|.++|.+|+++|||+||+||||++|+.++ |+++ .+
T Consensus 147 ~~l~~--a-~VlYl~DNaGE-i~FD~v-lie~ik~~~~~vv~vVrg~PIlnDaT~EDak~~------------~i~~-i~ 208 (285)
T COG1578 147 ELLKN--A-SVLYLTDNAGE-IVFDKV-LIEVIKELGKKVVVVVRGGPILNDATMEDAKEA------------GIDE-IA 208 (285)
T ss_pred HHhcc--C-cEEEEecCCcc-HHHHHH-HHHHHHhcCCceEEEEcCCceechhhHHHHHHc------------Ccch-hh
Confidence 99987 5 99999999999 999997 999999999999999999999999999999999 9998 67
Q ss_pred EEecCCCCCCCCChhhhcHHHHh
Q 021582 285 LIANSGNDLPVRNGSAAFYFLKS 307 (310)
Q Consensus 285 ~Vi~sG~~~pg~~l~~~s~~~~~ 307 (310)
+||+||+++||+.++.+|+||++
T Consensus 209 ~vittG~~~vGi~l~d~s~Ef~~ 231 (285)
T COG1578 209 KVITTGSDIVGIWLEDVSEEFRE 231 (285)
T ss_pred eeecCCCCcceeeHHhccHHHHH
Confidence 99999999999999999987765
No 4
>PF01937 DUF89: Protein of unknown function DUF89; InterPro: IPR002791 This entry contains uncharacterised proteins. Those with structural information consist of two domains: an all-alpha domain with a 3-helical bundle fold, and an alpha-beta domain in 3 layers, alpha/beta/alpha. ; PDB: 2FFJ_B 1XFI_A 2Q40_A 2G8L_B 3PT1_A.
Probab=100.00 E-value=5.3e-40 Score=317.79 Aligned_cols=252 Identities=23% Similarity=0.322 Sum_probs=199.3
Q ss_pred HhhhcHHHHHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhccCCCCCCCCChh-------------------HHHHHHH
Q 021582 48 LFLNSIPSFKKRAESDP--TVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPD-------------------CILLCRL 106 (310)
Q Consensus 48 ~~~~ci~c~~~qa~~~~--~~~~~~~~~~~~~~~~~~~L~~l~~~p~~~~~~~~-------------------~r~~~~l 106 (310)
++.+|+||+++|+.... ..++.++..+++.+++.+.+.++.. .++++. ....+.+
T Consensus 1 T~~~c~p~il~~~i~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~w~~~pWL~~e~yl 76 (355)
T PF01937_consen 1 TFRECLPCILTQAIDSLRRANDDAEEDIKEIIEELSKLRYELDT----NKPLPPITDDGPDSEEGPTWFNAPWLFAECYL 76 (355)
T ss_dssp HHHTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH----TTCGHHH-HHHHHHSTT-BTTBSBHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHhhc----CCCCCccccccccccccccccccchHHHHHHH
Confidence 57899999999998655 2333477788889999988888773 445544 0249999
Q ss_pred HHHHHHHcC------CccchHHHHHHHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHhhhhhhcchhhhhhhccCc
Q 021582 107 REQVLRELG------FRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDG 180 (310)
Q Consensus 107 ~~~~~~~~g------~~DPy~~~K~~~N~~Al~~~~~l~~~ld~~~~~~d~l~~alr~alaGN~iD~g~~~~~~~~~~~~ 180 (310)
|+++++.+| ..|||+++|+++|+.|++.++.+.+.++++++..+++.+++++++|||++|||+....+. .+
T Consensus 77 yr~i~~~~~~~~~~~~~DPf~~~K~~~~~~al~~~~~l~~~l~~~~~~~~~~~~~l~~al~GN~~Dls~~~~~~~---~~ 153 (355)
T PF01937_consen 77 YRRILEIFGYSSYLKNYDPFAEQKQESNEIALKLIPELAERLESLPDPRERFREALKLALWGNIIDLSLSPGHEV---GE 153 (355)
T ss_dssp HHHHHHHHTHSTTTTTS-TTHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHCG--CCCHTSHHC---HH
T ss_pred HHHHHHhcccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHhcCcccCccccchh---cc
Confidence 999999999 999999999999999999999999999886655567999999999999999998761111 12
Q ss_pred ccHHHHHhhhcCCCCCCCCHHHHHHHhcccCCCeEEEEecCCCcchhcchHHHHHHHHh--CCCEEEEEecCCC-ccccC
Q 021582 181 MSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLR--RGTQVILAANDLP-SINDV 257 (310)
Q Consensus 181 ~~~~~~~~~~~~~~~~~Dd~~~~~~~L~~~~~k~ilyl~DNaGediVfD~Lpli~~L~~--~g~~V~l~vk~~P-~lNDa 257 (310)
.+....+.+..+++|.+||+++|.+.|.+.++++|+||+||||.|+|||++ |+++|++ .|.+|+++||++| ++|||
T Consensus 154 ~~~~~~~~~~~~~~~l~dd~~~~~~~l~~~~~~~v~~v~DNaG~Elv~D~l-l~~~L~~~~~~~~V~~~vK~~P~~vnDv 232 (355)
T PF01937_consen 154 FDQEEEIEKALEKPILVDDSDEFWEKLENKKAKRVDIVLDNAGFELVFDLL-LAEFLLESGPGSKVVFHVKGIPWFVNDV 232 (355)
T ss_dssp HHHHHHHHHHHHSTESEE-HHHHHHHHCTCHTSEEEEE--BTTHHHHHHHH-HHHHHHHTCTTSEEEEEEBSS--TTTB-
T ss_pred cchHHHHHHhhhcCCccccHHHHHHHhhccCCCEEEEEEcCCCcHHHhhHH-HHHHHHHhCCCCeEEEEECCCCCeeccC
Confidence 456677777888999999999999999443489999999999933999998 9999999 7899999999999 99999
Q ss_pred ChHHHHHHHHHhhhhhhh-----ccCccc--cceEEecCCCC--CCCCChhhhcHHHHh
Q 021582 258 TYPELIEIMSKLKDEKGQ-----LMGVDT--SKLLIANSGND--LPVRNGSAAFYFLKS 307 (310)
Q Consensus 258 T~~d~~~~l~~~a~~~~~-----l~gl~~--~~~~Vi~sG~~--~pg~~l~~~s~~~~~ 307 (310)
|.+|+..+|+.+++.+.. -.|+++ ...+++.+|++ +||++++++|+++++
T Consensus 233 T~~D~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~fw~~~~~~~~~~~el~~ 291 (355)
T PF01937_consen 233 TMEDAEWLLERLADSDDFSLSALGKGLDKYLESGRVIVSGDDFWTPGLDLWEMSPELYE 291 (355)
T ss_dssp BHHHHHHHHHHHH-TTTCHHHHHHTTHHHHHHTSEEEEESSCGGSSS--CCGSHHHHHH
T ss_pred cHHHHHHHHHHHHhcccccccccccchhhccccCeEEecCCCccCCCCChHHcCHHHHH
Confidence 999999999998887744 345554 24588999999 999999999977764
No 5
>KOG3870 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=2.7e-13 Score=130.78 Aligned_cols=172 Identities=21% Similarity=0.297 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHHH--cCCccchHHHHHHHHHHHHHHHHHHHHHhhhhhhchH----HHHHHHHHHHHhhhhhhcchhhh
Q 021582 100 CILLCRLREQVLRE--LGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGK----RVESLIRGIFAGNIFDLGSAQLA 173 (310)
Q Consensus 100 ~r~~~~l~~~~~~~--~g~~DPy~~~K~~~N~~Al~~~~~l~~~ld~~~~~~d----~l~~alr~alaGN~iD~g~~~~~ 173 (310)
|-+-.+++..+.+. ...-|||.++|++-.......+.++......+..+.+ -+.+++++++|||..|++.....
T Consensus 120 CYlYRrI~s~F~~s~~l~~yD~F~~~K~~~~~~s~~~i~ela~~~~~l~~~~~~~~~~F~~llkisLWGN~~Dlsl~~~~ 199 (434)
T KOG3870|consen 120 CYLYRRISSIFQRSSELKKYDYFFDQKESTLTSSLPAIEELAKRTRGLERSLESIHEVFVELLKISLWGNATDLSLNGGT 199 (434)
T ss_pred HHHHHHHHHHHHhhhhhhhcChHHHHhHHHHhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhcccccccccccc
Confidence 33444444444433 3456999999999998888888877777765555555 68899999999999999973311
Q ss_pred hhhccCcccHHHHHhhhcCCCCCCCCHHHHHHHhccc---CCCeEEEEecCCCcchhcchHHHHHHHHhCC--CEEEEEe
Q 021582 174 EVFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKK---AWKKAVIFVDNSGADIILGILPFARELLRRG--TQVILAA 248 (310)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~Dd~~~~~~~L~~~---~~k~ilyl~DNaGediVfD~Lpli~~L~~~g--~~V~l~v 248 (310)
+ +..+....+++.+ ..+..++||++.+.+.|.+. .+++|-+++||||.|.+-|++ |++.|++.| .+|++++
T Consensus 200 ~--~~~~~q~~~~va~-~~~~iLvnd~~~vW~~L~~~k~s~~~rVDfVlDNaGfEL~~DLi-lAeyli~~glA~kV~fH~ 275 (434)
T KOG3870|consen 200 E--SKQNIQVLKAVAD-LDEFILVNDTEDVWSKLSNAKHSRNGRVDFVLDNAGFELFTDLI-LAEYLISSGLATKVRFHV 275 (434)
T ss_pred c--ccchhHHHHHHHh-hccceeecChHHHHHHhhcchhcCCceEEEEEeCCccchhHHHH-HHHHHHhccccceEEEcc
Confidence 1 1112233445555 35568899999999999764 568999999999999999998 999999998 7999999
Q ss_pred cCCCc-cccCChHHHHHHHHHhhhhhhh
Q 021582 249 NDLPS-INDVTYPELIEIMSKLKDEKGQ 275 (310)
Q Consensus 249 k~~P~-lNDaT~~d~~~~l~~~a~~~~~ 275 (310)
|.-|. ++|||..|..-+++.+....+.
T Consensus 276 KaiPWFVSDvt~~Df~wll~~L~~~~~~ 303 (434)
T KOG3870|consen 276 KAIPWFVSDVTEKDFDWLLEFLRDHEDE 303 (434)
T ss_pred cCCceeeecccccchHHHHHHHhccCcH
Confidence 99999 9999999999888886665543
No 6
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=76.91 E-value=66 Score=30.18 Aligned_cols=123 Identities=15% Similarity=0.108 Sum_probs=79.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHhh-hhhhcchhhhhhhccCcccHHHHHhhhcCCCC
Q 021582 117 RDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGN-IFDLGSAQLAEVFSKDGMSFLASCQNLVPRPW 195 (310)
Q Consensus 117 ~DPy~~~K~~~N~~Al~~~~~l~~~ld~~~~~~d~l~~alr~alaGN-~iD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (310)
+|+.....++..+.....+....+.+ ..+.+..++....... ++=+|.....-+ ..++..-+.++-.+-.
T Consensus 90 ~~~~~~~~~~~~~~~~~~l~~t~~~l-----~~~~l~~av~~L~~A~rI~~~G~g~S~~v----A~~~~~~l~~ig~~~~ 160 (281)
T COG1737 90 DDGPESILEKLLAANIAALERTLNLL-----DEEALERAVELLAKARRIYFFGLGSSGLV----ASDLAYKLMRIGLNVV 160 (281)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHcCCeEEEEEechhHHH----HHHHHHHHHHcCCcee
Confidence 44555555555555555555555555 2366888888888666 445664332111 1356666677666667
Q ss_pred CCCCHHHHHHHhcccCCCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecC
Q 021582 196 VIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAAND 250 (310)
Q Consensus 196 ~~Dd~~~~~~~L~~~~~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~ 250 (310)
.++|...+...+..-....++++...+|+ -- ..+-.++..+++|.+|+.....
T Consensus 161 ~~~d~~~~~~~~~~~~~~Dv~i~iS~sG~-t~-e~i~~a~~ak~~ga~vIaiT~~ 213 (281)
T COG1737 161 ALSDTHGQLMQLALLTPGDVVIAISFSGY-TR-EIVEAAELAKERGAKVIAITDS 213 (281)
T ss_pred EecchHHHHHHHHhCCCCCEEEEEeCCCC-cH-HHHHHHHHHHHCCCcEEEEcCC
Confidence 77777776644443346789999999998 44 4555778888899998887665
No 7
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=76.68 E-value=34 Score=31.65 Aligned_cols=124 Identities=14% Similarity=0.088 Sum_probs=67.3
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHH-HhhhhhhcchhhhhhhccCcccHHHHHhhhcCCC
Q 021582 116 FRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIF-AGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRP 194 (310)
Q Consensus 116 ~~DPy~~~K~~~N~~Al~~~~~l~~~ld~~~~~~d~l~~alr~al-aGN~iD~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (310)
.+|+.........+.....+....+.+ ..+.+..+++... +.+++=+|.....-+ ...|...+.++-..-
T Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~t~~~~-----~~~~l~~~~~~i~~a~~I~i~G~G~s~~~----A~~~~~~l~~~g~~~ 157 (278)
T PRK11557 87 GDDPLRLVGEKLIKENTAAMRATLDVN-----SEEKLHECVTMLRSARRIILTGIGASGLV----AQNFAWKLMKIGINA 157 (278)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHhcCCeEEEEecChhHHH----HHHHHHHHhhCCCeE
Confidence 355554444333333333333333333 2355666766655 555556776442111 123444444432222
Q ss_pred CCCCCHHHHHHHhcccCCCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecC
Q 021582 195 WVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAAND 250 (310)
Q Consensus 195 ~~~Dd~~~~~~~L~~~~~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~ 250 (310)
...+|...+...+...+.+.++++...+|+ -- +.+=.++..+++|.+|+.....
T Consensus 158 ~~~~d~~~~~~~~~~~~~~Dv~I~iS~sg~-~~-~~~~~~~~ak~~ga~iI~IT~~ 211 (278)
T PRK11557 158 VAERDMHALLATVQALSPDDLLLAISYSGE-RR-ELNLAADEALRVGAKVLAITGF 211 (278)
T ss_pred EEcCChHHHHHHHHhCCCCCEEEEEcCCCC-CH-HHHHHHHHHHHcCCCEEEEcCC
Confidence 334566555554443335679999999998 33 2222678888899999988764
No 8
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=72.87 E-value=41 Score=31.50 Aligned_cols=151 Identities=11% Similarity=0.111 Sum_probs=85.7
Q ss_pred HHHHHHhhhhhhchHHHHHHHHHHHHh-hhhhhcchhhhhhhccCcc-cHHH---HHhhhcCCCCCCCCH--HHHHHHhc
Q 021582 136 GDVVRLNDVIEDEGKRVESLIRGIFAG-NIFDLGSAQLAEVFSKDGM-SFLA---SCQNLVPRPWVIDDL--ETFKVKWS 208 (310)
Q Consensus 136 ~~l~~~ld~~~~~~d~l~~alr~alaG-N~iD~g~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~Dd~--~~~~~~L~ 208 (310)
+.+++.+.+ .+-+.-+..+.+..-.| .+||.|+.... . + +. .+.. .+.+....|+.+|-+ +.+...|+
T Consensus 13 ~~~~~~~~~-~d~~~i~~~A~~~~~~GAdiIDVg~~~~~-~-e--E~~r~~~~v~~l~~~~~~plsIDT~~~~v~eaaL~ 87 (261)
T PRK07535 13 KSIAEAIEA-KDAAFIQKLALKQAEAGADYLDVNAGTAV-E-E--EPETMEWLVETVQEVVDVPLCIDSPNPAAIEAGLK 87 (261)
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHCCCCEEEECCCCCc-h-h--HHHHHHHHHHHHHHhCCCCEEEeCCCHHHHHHHHH
Confidence 344555532 11123355566666666 67799975321 0 0 11 2333 333334668888764 44555554
Q ss_pred ccCCCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEe---cCCCccccCChHHHHHHHHHhhhhhhhccCccccceE
Q 021582 209 KKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAA---NDLPSINDVTYPELIEIMSKLKDEKGQLMGVDTSKLL 285 (310)
Q Consensus 209 ~~~~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~v---k~~P~lNDaT~~d~~~~l~~~a~~~~~l~gl~~~~~~ 285 (310)
. ++..-++-|=+|+.--++. .++.+++.|..|++.. +|.| -|+++..+.+++...... -.|+.... .
T Consensus 88 ~--~~G~~iINsIs~~~~~~~~--~~~l~~~~g~~vv~m~~~~~g~P----~t~~~~~~~l~~~v~~a~-~~GI~~~~-I 157 (261)
T PRK07535 88 V--AKGPPLINSVSAEGEKLEV--VLPLVKKYNAPVVALTMDDTGIP----KDAEDRLAVAKELVEKAD-EYGIPPED-I 157 (261)
T ss_pred h--CCCCCEEEeCCCCCccCHH--HHHHHHHhCCCEEEEecCCCCCC----CCHHHHHHHHHHHHHHHH-HcCCCHhH-E
Confidence 3 2234578898897322343 4566777898888765 4555 256665666666555443 33786533 8
Q ss_pred EecCCCCCCCCChhhh
Q 021582 286 IANSGNDLPVRNGSAA 301 (310)
Q Consensus 286 Vi~sG~~~pg~~l~~~ 301 (310)
+++.|....|......
T Consensus 158 ilDPgi~~~~~~~~~~ 173 (261)
T PRK07535 158 YIDPLVLPLSAAQDAG 173 (261)
T ss_pred EEeCCCCcccCChHHH
Confidence 8999998777764443
No 9
>PRK15482 transcriptional regulator MurR; Provisional
Probab=55.72 E-value=1.7e+02 Score=27.08 Aligned_cols=123 Identities=19% Similarity=0.070 Sum_probs=63.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHH-HhhhhhhcchhhhhhhccCcccHHHHHhhhcCCCC
Q 021582 117 RDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIF-AGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPW 195 (310)
Q Consensus 117 ~DPy~~~K~~~N~~Al~~~~~l~~~ld~~~~~~d~l~~alr~al-aGN~iD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (310)
+|+...+.++.+......+......++ .+.+..+++... +.+++=+|.....-+ ...|..-+.++-..-.
T Consensus 95 ~~~~~~i~~~~~~~~~~~i~~t~~~id-----~~~l~~~~~~i~~A~~I~i~G~G~S~~~----A~~l~~~l~~~g~~~~ 165 (285)
T PRK15482 95 DDSLEVIARKLNREKELALEQTCALFD-----YARLQKIIEVISKAPFIQITGLGGSALV----GRDLSFKLMKIGYRVA 165 (285)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhcC-----HHHHHHHHHHHHhCCeeEEEEeChhHHH----HHHHHHHHHhCCCeeE
Confidence 344444443333333333444444442 245777776665 445556776442111 1233433443311112
Q ss_pred CCCCHHHHHHHhcccCCCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecC
Q 021582 196 VIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAAND 250 (310)
Q Consensus 196 ~~Dd~~~~~~~L~~~~~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~ 250 (310)
...|...............++++...+|+ -- +.+-.++..+++|.+|+.....
T Consensus 166 ~~~d~~~~~~~~~~~~~~Dv~i~iS~sg~-t~-~~~~~~~~a~~~g~~iI~IT~~ 218 (285)
T PRK15482 166 CEADTHVQATVSQALKKGDVQIAISYSGS-KK-EIVLCAEAARKQGATVIAITSL 218 (285)
T ss_pred EeccHhHHHHHHhcCCCCCEEEEEeCCCC-CH-HHHHHHHHHHHCCCEEEEEeCC
Confidence 22344433322222224679999999998 44 3334777888889999887754
No 10
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=54.75 E-value=15 Score=29.68 Aligned_cols=36 Identities=31% Similarity=0.339 Sum_probs=24.7
Q ss_pred EEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCC
Q 021582 216 VIFVDNSGADIILGILPFARELLRRGTQVILAANDLP 252 (310)
Q Consensus 216 lyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~P 252 (310)
++.+==+|. -|+=.++++++|+++||+|++++.+..
T Consensus 2 li~~~Gt~G-hv~P~lala~~L~~rGh~V~~~~~~~~ 37 (139)
T PF03033_consen 2 LIATGGTRG-HVYPFLALARALRRRGHEVRLATPPDF 37 (139)
T ss_dssp EEEEESSHH-HHHHHHHHHHHHHHTT-EEEEEETGGG
T ss_pred EEEEcCChh-HHHHHHHHHHHHhccCCeEEEeecccc
Confidence 444444566 444555799999999999998877644
No 11
>PRK06924 short chain dehydrogenase; Provisional
Probab=50.55 E-value=1e+02 Score=27.27 Aligned_cols=34 Identities=32% Similarity=0.404 Sum_probs=25.4
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 021582 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (310)
Q Consensus 213 k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~ 251 (310)
|++++.+ -+|. ++.- +++.|.++|.+|+++.|..
T Consensus 2 k~vlItG-asgg---iG~~-ia~~l~~~g~~V~~~~r~~ 35 (251)
T PRK06924 2 RYVIITG-TSQG---LGEA-IANQLLEKGTHVISISRTE 35 (251)
T ss_pred cEEEEec-CCch---HHHH-HHHHHHhcCCEEEEEeCCc
Confidence 3455555 4444 4886 9999999999999988865
No 12
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=47.05 E-value=44 Score=30.35 Aligned_cols=36 Identities=25% Similarity=0.427 Sum_probs=27.9
Q ss_pred CCeEEEEe---cCCCcchhcchHHHHHHHHhCCCEEEEEecCCC
Q 021582 212 WKKAVIFV---DNSGADIILGILPFARELLRRGTQVILAANDLP 252 (310)
Q Consensus 212 ~k~ilyl~---DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~P 252 (310)
+++++++| +|-|- +.. .+|+|...|..|++...+.|
T Consensus 49 ~~~v~vlcG~GnNGGD----G~V-aAR~L~~~G~~V~v~~~~~~ 87 (203)
T COG0062 49 ARRVLVLCGPGNNGGD----GLV-AARHLKAAGYAVTVLLLGDP 87 (203)
T ss_pred CCEEEEEECCCCccHH----HHH-HHHHHHhCCCceEEEEeCCC
Confidence 57899998 77775 555 99999999988877765544
No 13
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=44.43 E-value=87 Score=23.03 Aligned_cols=40 Identities=23% Similarity=0.262 Sum_probs=29.7
Q ss_pred chHHHHHHHHhCCCEEEEEecCCCccccCChHHHHHHHHHhh
Q 021582 229 GILPFARELLRRGTQVILAANDLPSINDVTYPELIEIMSKLK 270 (310)
Q Consensus 229 D~Lpli~~L~~~g~~V~l~vk~~P~lNDaT~~d~~~~l~~~a 270 (310)
++= ++..|.+.|.+|+++.++..++ ...-+++...+.+..
T Consensus 11 g~E-~A~~l~~~g~~vtli~~~~~~~-~~~~~~~~~~~~~~l 50 (80)
T PF00070_consen 11 GIE-LAEALAELGKEVTLIERSDRLL-PGFDPDAAKILEEYL 50 (80)
T ss_dssp HHH-HHHHHHHTTSEEEEEESSSSSS-TTSSHHHHHHHHHHH
T ss_pred HHH-HHHHHHHhCcEEEEEeccchhh-hhcCHHHHHHHHHHH
Confidence 453 7889999999999999998888 566666665544433
No 14
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=43.01 E-value=17 Score=39.31 Aligned_cols=59 Identities=20% Similarity=0.376 Sum_probs=47.6
Q ss_pred ccHHHHHhhhcCCCCCCCCHHHHHHHhcccCCCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEE
Q 021582 181 MSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILA 247 (310)
Q Consensus 181 ~~~~~~~~~~~~~~~~~Dd~~~~~~~L~~~~~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~ 247 (310)
.++-..+++.++.|++++..+. ++|+.+--=|+.|||-=+|+|+| +..|+..|++|.+.
T Consensus 435 ~NI~mQLRKccnHPYLF~g~eP------g~pyttdehLv~nSGKm~vLDkL--L~~Lk~~GhRVLIF 493 (971)
T KOG0385|consen 435 QNIMMQLRKCCNHPYLFDGAEP------GPPYTTDEHLVTNSGKMLVLDKL--LPKLKEQGHRVLIF 493 (971)
T ss_pred HHHHHHHHHhcCCccccCCCCC------CCCCCcchHHHhcCcceehHHHH--HHHHHhCCCeEEEe
Confidence 4677889999999999987543 24566667788999998999994 67899999999876
No 15
>PRK02947 hypothetical protein; Provisional
Probab=42.51 E-value=1.5e+02 Score=27.32 Aligned_cols=38 Identities=29% Similarity=0.233 Sum_probs=30.3
Q ss_pred CCCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecC
Q 021582 211 AWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAAND 250 (310)
Q Consensus 211 ~~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~ 250 (310)
..+.++++..++|+ -- +.+-+++.++++|.+|+.....
T Consensus 105 ~~~Dv~i~iS~sG~-t~-~~i~~~~~a~~~g~~vI~iT~~ 142 (246)
T PRK02947 105 RPGDVLIVVSNSGR-NP-VPIEMALEAKERGAKVIAVTSL 142 (246)
T ss_pred CCCCEEEEEeCCCC-CH-HHHHHHHHHHHCCCEEEEEcCC
Confidence 35789999999998 44 4445788889999999888765
No 16
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=41.97 E-value=2.5e+02 Score=26.38 Aligned_cols=107 Identities=11% Similarity=0.177 Sum_probs=60.2
Q ss_pred HHHHHHHhhhhhhchHHHHHHHHHHHH--hhhhhhcchhhhhhhccCcccHHHHHhhhcCCCCCCCCHHHHHHHhcccCC
Q 021582 135 FGDVVRLNDVIEDEGKRVESLIRGIFA--GNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKKAW 212 (310)
Q Consensus 135 ~~~l~~~ld~~~~~~d~l~~alr~ala--GN~iD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dd~~~~~~~L~~~~~ 212 (310)
+.+..+.++.+. +.+..++....- ++++=+|.....-+ ...|..-+.++-.....+++...+...+.....
T Consensus 17 ~~~~~~~~~~l~---~~~~~~~~~l~~~~~~I~i~G~G~S~~~----A~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 89 (321)
T PRK11543 17 LQEASRLPERLG---DDFVRAANIILHCEGKVVVSGIGKSGHI----GKKIAATLASTGTPAFFVHPAEALHGDLGMIES 89 (321)
T ss_pred HHHHHHHHHhcc---HHHHHHHHHHHhcCCcEEEEecChhHHH----HHHHHHHHHcCCCceeecChHHHhhCCcCccCC
Confidence 344444443322 235555555543 35667776442111 134455555543334455555444433332235
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecC
Q 021582 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAAND 250 (310)
Q Consensus 213 k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~ 250 (310)
+.++++..++|+ -- +.+-.++..+++|.+|+.....
T Consensus 90 ~d~~i~iS~sG~-t~-~~~~~~~~ak~~g~~vI~iT~~ 125 (321)
T PRK11543 90 RDVMLFISYSGG-AK-ELDLIIPRLEDKSIALLAMTGK 125 (321)
T ss_pred CCEEEEEeCCCC-cH-HHHHHHHHHHHcCCeEEEEECC
Confidence 689999999998 54 3334778888999999887763
No 17
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=40.48 E-value=1e+02 Score=27.94 Aligned_cols=76 Identities=13% Similarity=0.118 Sum_probs=45.9
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEE--------ecCCCccccCCh-HH----HHHHHHH------hhhh
Q 021582 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILA--------ANDLPSINDVTY-PE----LIEIMSK------LKDE 272 (310)
Q Consensus 212 ~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~--------vk~~P~lNDaT~-~d----~~~~l~~------~a~~ 272 (310)
+|++++++. ++ ++++ |++-.|++.|..|+++ .+++..-+=-|. .+ +.+.+++ ++.+
T Consensus 62 GK~vvVIGr--S~--iVGk-Pla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~ 136 (197)
T cd01079 62 GKTITIINR--SE--VVGR-PLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPS 136 (197)
T ss_pred CCEEEEECC--Cc--cchH-HHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEccCC
Confidence 488888853 44 4599 9999999999999988 333332111121 22 3444333 4444
Q ss_pred hhh-ccC--ccccceEEecCCCCC
Q 021582 273 KGQ-LMG--VDTSKLLIANSGNDL 293 (310)
Q Consensus 273 ~~~-l~g--l~~~~~~Vi~sG~~~ 293 (310)
-.. +.+ ++++ ..||+-|...
T Consensus 137 ~~~~i~~d~ik~G-avVIDVGi~~ 159 (197)
T cd01079 137 PNYKVPTELLKDG-AICINFASIK 159 (197)
T ss_pred CCCccCHHHcCCC-cEEEEcCCCc
Confidence 454 444 5554 4788888763
No 18
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=38.96 E-value=1.6e+02 Score=29.67 Aligned_cols=82 Identities=23% Similarity=0.282 Sum_probs=51.4
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCCccccCChHHHHHHHHH----hhhhhhhccCccccceEEe
Q 021582 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIMSK----LKDEKGQLMGVDTSKLLIA 287 (310)
Q Consensus 212 ~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~P~lNDaT~~d~~~~l~~----~a~~~~~l~gl~~~~~~Vi 287 (310)
.+++++++ +|| ...+ .+++|.+.|.+.++++|- |.+-+.++-++ +...+.+...|.+..+.|.
T Consensus 178 ~~~vlvIG--AGe---m~~l-va~~L~~~g~~~i~IaNR-------T~erA~~La~~~~~~~~~l~el~~~l~~~DvVis 244 (414)
T COG0373 178 DKKVLVIG--AGE---MGEL-VAKHLAEKGVKKITIANR-------TLERAEELAKKLGAEAVALEELLEALAEADVVIS 244 (414)
T ss_pred cCeEEEEc--ccH---HHHH-HHHHHHhCCCCEEEEEcC-------CHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEE
Confidence 58899998 787 3576 899999999554444443 44444433222 2222333334666566777
Q ss_pred cCCCCCCCCChhhhcHHHH
Q 021582 288 NSGNDLPVRNGSAAFYFLK 306 (310)
Q Consensus 288 ~sG~~~pg~~l~~~s~~~~ 306 (310)
+||+..|-+..+.+-+-.+
T Consensus 245 sTsa~~~ii~~~~ve~a~~ 263 (414)
T COG0373 245 STSAPHPIITREMVERALK 263 (414)
T ss_pred ecCCCccccCHHHHHHHHh
Confidence 8888888887776655443
No 19
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=38.93 E-value=17 Score=36.15 Aligned_cols=73 Identities=19% Similarity=0.235 Sum_probs=38.9
Q ss_pred hHHHHHHH--HHHHHhhhhhhcchh-hhhhhccCcccHHHHHhhhc----------------CCCCCCCCHHHHHHHhcc
Q 021582 149 GKRVESLI--RGIFAGNIFDLGSAQ-LAEVFSKDGMSFLASCQNLV----------------PRPWVIDDLETFKVKWSK 209 (310)
Q Consensus 149 ~d~l~~al--r~alaGN~iD~g~~~-~~~~~~~~~~~~~~~~~~~~----------------~~~~~~Dd~~~~~~~L~~ 209 (310)
.|.|.+.+ +.--.|+..|||... .+++.+.+.+|++...+.+. .+.|.+++..++.+..++
T Consensus 107 YDTL~~VIG~~g~~~GSL~e~Gi~Y~~v~L~~dg~~D~~~i~~~~~~~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~ 186 (403)
T PF06838_consen 107 YDTLEEVIGIRGNGPGSLKEFGIKYREVPLTEDGTIDWEAIKKALKPNTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKE 186 (403)
T ss_dssp -CCHHHHHTSSSSSSSSTGGGT-EEEE--B-TTSSB-HHHHHHHHHTTEEEEEEE-S-TTSSS----HHHHHHHHHHHHH
T ss_pred hhhHHHHhCCCCCCCCChHHhCceeEEEeecCCCCcCHHHHHHhhccCceEEEEecCCCCCCCCCCCHHHHHHHHHHHHh
Confidence 35566665 333468999999854 23343445677665544432 124667777777776654
Q ss_pred cCCCeEEEEecCC
Q 021582 210 KAWKKAVIFVDNS 222 (310)
Q Consensus 210 ~~~k~ilyl~DNa 222 (310)
. ...+++|+|||
T Consensus 187 ~-~p~~iifVDNC 198 (403)
T PF06838_consen 187 I-NPDVIIFVDNC 198 (403)
T ss_dssp H--TTSEEEEE-T
T ss_pred h-CCCeEEEEeCC
Confidence 2 35789999999
No 20
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=38.82 E-value=97 Score=26.28 Aligned_cols=68 Identities=16% Similarity=0.166 Sum_probs=42.9
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCCccccCChHHHHHHHHH------hhhhhhhccC--ccccc
Q 021582 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIMSK------LKDEKGQLMG--VDTSK 283 (310)
Q Consensus 212 ~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~P~lNDaT~~d~~~~l~~------~a~~~~~l~g--l~~~~ 283 (310)
.+++++++-+- ..++ ||+..|.+.|..|+.+-+..+ ++.+.++. +..+.+++.+ ++.+.
T Consensus 28 gk~v~VvGrs~----~vG~-pla~lL~~~gatV~~~~~~t~--------~l~~~v~~ADIVvsAtg~~~~i~~~~ikpGa 94 (140)
T cd05212 28 GKKVLVVGRSG----IVGA-PLQCLLQRDGATVYSCDWKTI--------QLQSKVHDADVVVVGSPKPEKVPTEWIKPGA 94 (140)
T ss_pred CCEEEEECCCc----hHHH-HHHHHHHHCCCEEEEeCCCCc--------CHHHHHhhCCEEEEecCCCCccCHHHcCCCC
Confidence 57888875432 2377 899999999999999865433 34433333 3444455554 56643
Q ss_pred eEEecCCCCC
Q 021582 284 LLIANSGNDL 293 (310)
Q Consensus 284 ~~Vi~sG~~~ 293 (310)
.|++-|...
T Consensus 95 -~Vidvg~~~ 103 (140)
T cd05212 95 -TVINCSPTK 103 (140)
T ss_pred -EEEEcCCCc
Confidence 666766554
No 21
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=38.65 E-value=45 Score=30.33 Aligned_cols=58 Identities=33% Similarity=0.453 Sum_probs=43.7
Q ss_pred cchHHHHHHHHhCCCEEEEEecCCCc--------------cccCChHHHH-HHHHHhhhhhhhccCccccceEEecCCCC
Q 021582 228 LGILPFARELLRRGTQVILAANDLPS--------------INDVTYPELI-EIMSKLKDEKGQLMGVDTSKLLIANSGND 292 (310)
Q Consensus 228 fD~Lpli~~L~~~g~~V~l~vk~~P~--------------lNDaT~~d~~-~~l~~~a~~~~~l~gl~~~~~~Vi~sG~~ 292 (310)
|+.. +++.|.+.|+.|+++-+..-. .-|+|..+++ ++ |+++....|+.||.+
T Consensus 11 vG~~-va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~a------------gi~~aD~vva~t~~d 77 (225)
T COG0569 11 VGRS-VARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEA------------GIDDADAVVAATGND 77 (225)
T ss_pred HHHH-HHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhc------------CCCcCCEEEEeeCCC
Confidence 7885 999999999999987654322 5677878777 55 888877788999987
Q ss_pred CCCCCh
Q 021582 293 LPVRNG 298 (310)
Q Consensus 293 ~pg~~l 298 (310)
..-+.+
T Consensus 78 ~~N~i~ 83 (225)
T COG0569 78 EVNSVL 83 (225)
T ss_pred HHHHHH
Confidence 644433
No 22
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=38.02 E-value=1.1e+02 Score=26.64 Aligned_cols=44 Identities=27% Similarity=0.292 Sum_probs=32.9
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCCccccCChHHHHHHHHH
Q 021582 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIMSK 268 (310)
Q Consensus 212 ~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~P~lNDaT~~d~~~~l~~ 268 (310)
.+++++++ +|+ ++ +.. +++.|.++|.+|+++-|. .+++.+.+..
T Consensus 44 gk~vlViG--~G~-~~-G~~-~a~~L~~~g~~V~v~~r~--------~~~l~~~l~~ 87 (168)
T cd01080 44 GKKVVVVG--RSN-IV-GKP-LAALLLNRNATVTVCHSK--------TKNLKEHTKQ 87 (168)
T ss_pred CCEEEEEC--CcH-HH-HHH-HHHHHhhCCCEEEEEECC--------chhHHHHHhh
Confidence 58999986 477 43 774 999999999999888875 3566655444
No 23
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=37.78 E-value=50 Score=31.77 Aligned_cols=37 Identities=19% Similarity=0.169 Sum_probs=29.1
Q ss_pred eEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 021582 214 KAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (310)
Q Consensus 214 ~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~ 251 (310)
+|++++=.+-. .+.=+++++++|+++||+|+++.-..
T Consensus 2 rIl~~~~p~~G-Hv~P~l~la~~L~~rGh~V~~~t~~~ 38 (401)
T cd03784 2 RVLITTIGSRG-DVQPLVALAWALRAAGHEVRVATPPE 38 (401)
T ss_pred eEEEEeCCCcc-hHHHHHHHHHHHHHCCCeEEEeeCHh
Confidence 56666666666 66677789999999999999997753
No 24
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=37.68 E-value=55 Score=28.80 Aligned_cols=34 Identities=26% Similarity=0.382 Sum_probs=26.9
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 021582 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (310)
Q Consensus 213 k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~ 251 (310)
+++++.+=+.|- +.- +++.|+++|++|+++.|+.
T Consensus 6 ~~vlItGasg~i----G~~-l~~~l~~~G~~V~~~~r~~ 39 (251)
T PRK07231 6 KVAIVTGASSGI----GEG-IARRFAAEGARVVVTDRNE 39 (251)
T ss_pred cEEEEECCCChH----HHH-HHHHHHHCCCEEEEEeCCH
Confidence 566666555443 886 9999999999999999875
No 25
>PF07592 DDE_Tnp_ISAZ013: Rhodopirellula transposase DDE domain; InterPro: IPR011518 These transposases are found in the planctomycete Rhodopirellula baltica, the cyanobacterium Nostoc, and the Gram-positive bacterium Streptomyces. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=36.88 E-value=38 Score=32.81 Aligned_cols=58 Identities=17% Similarity=0.201 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHhcc---cCCCeEEEEecCCCcchhcchHHHHHHHHhC----CCEEEEE------ecCCCc
Q 021582 195 WVIDDLETFKVKWSK---KAWKKAVIFVDNSGADIILGILPFARELLRR----GTQVILA------ANDLPS 253 (310)
Q Consensus 195 ~~~Dd~~~~~~~L~~---~~~k~ilyl~DNaGediVfD~Lpli~~L~~~----g~~V~l~------vk~~P~ 253 (310)
|++|.+..|.+.+.+ +.++++|+.+||-|+ -=.-.-.+..+|.+. |..|.++ -|-.||
T Consensus 162 Fav~~i~~WW~~~g~~~yp~a~~lli~~D~Ggs-N~~r~r~wk~~L~~la~~~gl~I~v~hyPP~tSKwN~I 232 (311)
T PF07592_consen 162 FAVDSIRRWWEEMGKARYPHAKRLLITADNGGS-NGSRRRLWKKRLQELADETGLSIRVCHYPPGTSKWNPI 232 (311)
T ss_pred HHHHHHHHHHHHhChhhcCchheEEEeccCCCC-ccchhHHHHHHHHHHHHHhCCEEEEEEcCCCcccccch
Confidence 677778888888843 347899999999998 555554477777653 8877765 455665
No 26
>PRK12829 short chain dehydrogenase; Provisional
Probab=36.18 E-value=76 Score=28.21 Aligned_cols=35 Identities=11% Similarity=0.139 Sum_probs=27.2
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 021582 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (310)
Q Consensus 212 ~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~ 251 (310)
.+++++.+-. |. ++.. +++.|++.|++|+++.|..
T Consensus 11 ~~~vlItGa~-g~---iG~~-~a~~L~~~g~~V~~~~r~~ 45 (264)
T PRK12829 11 GLRVLVTGGA-SG---IGRA-IAEAFAEAGARVHVCDVSE 45 (264)
T ss_pred CCEEEEeCCC-Cc---HHHH-HHHHHHHCCCEEEEEeCCH
Confidence 4677766655 44 3886 9999999999999999864
No 27
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=35.72 E-value=57 Score=28.43 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=26.9
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 021582 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (310)
Q Consensus 213 k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~ 251 (310)
+++++.+-+ |. ++.. +++.|.++|++|++..|+.
T Consensus 6 ~~ilItGas-g~---iG~~-l~~~l~~~g~~v~~~~r~~ 39 (246)
T PRK05653 6 KTALVTGAS-RG---IGRA-IALRLAADGAKVVIYDSNE 39 (246)
T ss_pred CEEEEECCC-cH---HHHH-HHHHHHHCCCEEEEEeCCh
Confidence 677777764 44 3886 9999999999999998864
No 28
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=34.60 E-value=1.1e+02 Score=28.32 Aligned_cols=32 Identities=25% Similarity=0.327 Sum_probs=25.7
Q ss_pred CeEEEEe--cCCCcchhcchHHHHHHHHhCCCEEEEEe
Q 021582 213 KKAVIFV--DNSGADIILGILPFARELLRRGTQVILAA 248 (310)
Q Consensus 213 k~ilyl~--DNaGediVfD~Lpli~~L~~~g~~V~l~v 248 (310)
++|++|| -|-|. |-+-.+|+|..+|.+|.++.
T Consensus 61 ~~V~VlcG~GNNGG----DGlv~AR~L~~~G~~V~v~~ 94 (246)
T PLN03050 61 PRVLLVCGPGNNGG----DGLVAARHLAHFGYEVTVCY 94 (246)
T ss_pred CeEEEEECCCCCch----hHHHHHHHHHHCCCeEEEEE
Confidence 6888887 56666 44459999999999999888
No 29
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=33.58 E-value=54 Score=29.31 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=27.9
Q ss_pred eEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCCc
Q 021582 214 KAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPS 253 (310)
Q Consensus 214 ~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~P~ 253 (310)
+|++++.+.|....+-. .+++.|.+.|++|+++......
T Consensus 1 kIl~i~~~~~g~~~~~~-~l~~~L~~~g~~v~~~~~~~~~ 39 (359)
T cd03808 1 KILHIVTVDGGLYSFRL-PLIKALRAAGYEVHVVAPPGDE 39 (359)
T ss_pred CeeEEEecchhHHHHHH-HHHHHHHhcCCeeEEEecCCCc
Confidence 47888887555244444 5899998999999988765443
No 30
>PRK13963 unkown domain/putative metalloprotease fusion protein; Provisional
Probab=33.36 E-value=1.5e+02 Score=27.98 Aligned_cols=66 Identities=17% Similarity=0.239 Sum_probs=40.6
Q ss_pred hhhcHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhccCCCCCCCCChhHHHHHHHHHHHHHHcCCccchH
Q 021582 49 FLNSIPSFKKRAESDPTVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFK 121 (310)
Q Consensus 49 ~~~ci~c~~~qa~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~p~~~~~~~~~r~~~~l~~~~~~~~g~~DPy~ 121 (310)
..-|.+...+||........ .+-..-+.--++ +|.-++ +..+.....+..+.+.+++.+|+.|||.
T Consensus 193 IvIc~e~v~rqA~e~~~sl~-~El~~LlIHGlL-HLLGYD-----He~deEa~~Me~lE~~IL~~Lg~~~PY~ 258 (258)
T PRK13963 193 LVLCCPVVEKEAREQGKPLE-AHYAHLLVHGAL-HAQGYD-----HEDDEDAAEMEALETDILAKLGFPNPYR 258 (258)
T ss_pred EEEEHHHHHHHHHHcCCCHH-HHHHHHHHHHHH-HHcCCC-----CCChHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 34588888888877664432 222333333333 333333 2333334578888889999999999994
No 31
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.72 E-value=1.3e+02 Score=28.82 Aligned_cols=68 Identities=21% Similarity=0.341 Sum_probs=44.6
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCCccccCChHHHHHHHHH------hhhhhhhccC--ccccc
Q 021582 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIMSK------LKDEKGQLMG--VDTSK 283 (310)
Q Consensus 212 ~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~P~lNDaT~~d~~~~l~~------~a~~~~~l~g--l~~~~ 283 (310)
.+++++++ .|+ +| ++ |++..|+++|..|+++-+.. .++.+.+.. ++.+...+.. ++++
T Consensus 158 Gk~vvVIG--rs~-~V-G~-pla~lL~~~gatVtv~~s~t--------~~l~~~~~~ADIVIsAvg~p~~i~~~~vk~g- 223 (286)
T PRK14175 158 GKNAVVIG--RSH-IV-GQ-PVSKLLLQKNASVTILHSRS--------KDMASYLKDADVIVSAVGKPGLVTKDVVKEG- 223 (286)
T ss_pred CCEEEEEC--CCc-hh-HH-HHHHHHHHCCCeEEEEeCCc--------hhHHHHHhhCCEEEECCCCCcccCHHHcCCC-
Confidence 57888885 454 44 77 89999999999999887643 344444443 3333334433 5554
Q ss_pred eEEecCCCCC
Q 021582 284 LLIANSGNDL 293 (310)
Q Consensus 284 ~~Vi~sG~~~ 293 (310)
..||+-|+..
T Consensus 224 avVIDvGi~~ 233 (286)
T PRK14175 224 AVIIDVGNTP 233 (286)
T ss_pred cEEEEcCCCc
Confidence 5788888854
No 32
>PRK06398 aldose dehydrogenase; Validated
Probab=32.53 E-value=1.4e+02 Score=26.89 Aligned_cols=52 Identities=25% Similarity=0.268 Sum_probs=36.7
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCCc-------cccCChHHHH-HHHHHh
Q 021582 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPS-------INDVTYPELI-EIMSKL 269 (310)
Q Consensus 213 k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~P~-------lNDaT~~d~~-~~l~~~ 269 (310)
|++++.+=+.|- +.- +++.|.+.|++|+++.|..+- .-|++-.+.. .+++.+
T Consensus 7 k~vlItGas~gI----G~~-ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~D~~~~~~i~~~~~~~ 66 (258)
T PRK06398 7 KVAIVTGGSQGI----GKA-VVNRLKEEGSNVINFDIKEPSYNDVDYFKVDVSNKEQVIKGIDYV 66 (258)
T ss_pred CEEEEECCCchH----HHH-HHHHHHHCCCeEEEEeCCccccCceEEEEccCCCHHHHHHHHHHH
Confidence 677777655554 897 999999999999999886542 3477766543 444443
No 33
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=32.49 E-value=1.3e+02 Score=26.64 Aligned_cols=58 Identities=22% Similarity=0.282 Sum_probs=39.0
Q ss_pred EEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCCc--------cccCChHHHHHHHHHhhhhhhh
Q 021582 215 AVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPS--------INDVTYPELIEIMSKLKDEKGQ 275 (310)
Q Consensus 215 ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~P~--------lNDaT~~d~~~~l~~~a~~~~~ 275 (310)
|=||+..|-. -.+.. +++++.++|++|+++.....+ +.=-|.+|+.+.+...+..++.
T Consensus 20 VR~ItN~SSG--~~G~~-lA~~~~~~Ga~V~li~g~~~~~~p~~~~~i~v~sa~em~~~~~~~~~~~Di 85 (185)
T PF04127_consen 20 VRFITNRSSG--KMGAA-LAEEAARRGAEVTLIHGPSSLPPPPGVKVIRVESAEEMLEAVKELLPSADI 85 (185)
T ss_dssp SEEEEES--S--HHHHH-HHHHHHHTT-EEEEEE-TTS----TTEEEEE-SSHHHHHHHHHHHGGGGSE
T ss_pred ceEecCCCcC--HHHHH-HHHHHHHCCCEEEEEecCccccccccceEEEecchhhhhhhhccccCccee
Confidence 4466655544 36887 999999999999999876422 5557888888887776665554
No 34
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=32.39 E-value=92 Score=29.91 Aligned_cols=49 Identities=16% Similarity=0.131 Sum_probs=31.2
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCCccccCChHHHHHHHHH
Q 021582 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIMSK 268 (310)
Q Consensus 212 ~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~P~lNDaT~~d~~~~l~~ 268 (310)
++++++++|..=.+..++. +.+.|.+.| .+...+...| |.+.+..+++.
T Consensus 25 ~~~~liv~d~~~~~~~~~~--v~~~l~~~~-~~~~~~~~~~-----~~~~v~~~~~~ 73 (339)
T cd08173 25 GGRVLVVTGPTTKSIAGKK--VEALLEDEG-EVDVVIVEDA-----TYEEVEKVESS 73 (339)
T ss_pred CCeEEEEECCchHHHHHHH--HHHHHHhcC-CeEEEEeCCC-----CHHHHHHHHHH
Confidence 5799999987655444444 456676778 6655555555 66666665544
No 35
>PRK06138 short chain dehydrogenase; Provisional
Probab=32.09 E-value=68 Score=28.30 Aligned_cols=35 Identities=29% Similarity=0.416 Sum_probs=27.3
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCC
Q 021582 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLP 252 (310)
Q Consensus 213 k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~P 252 (310)
+++++.+-+.|- +.- +++.|.+.|++|++..|..+
T Consensus 6 k~~lItG~sg~i----G~~-la~~l~~~G~~v~~~~r~~~ 40 (252)
T PRK06138 6 RVAIVTGAGSGI----GRA-TAKLFAREGARVVVADRDAE 40 (252)
T ss_pred cEEEEeCCCchH----HHH-HHHHHHHCCCeEEEecCCHH
Confidence 567666665554 886 99999999999999987643
No 36
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=31.46 E-value=4e+02 Score=24.52 Aligned_cols=133 Identities=20% Similarity=0.246 Sum_probs=72.2
Q ss_pred HHHHHHHHHHh-hhhhhcchhhhhhhcc------Cc-ccHHHHHhhhc---CCCCCCCCH--HHHHHHhcccCCCeEEEE
Q 021582 152 VESLIRGIFAG-NIFDLGSAQLAEVFSK------DG-MSFLASCQNLV---PRPWVIDDL--ETFKVKWSKKAWKKAVIF 218 (310)
Q Consensus 152 l~~alr~alaG-N~iD~g~~~~~~~~~~------~~-~~~~~~~~~~~---~~~~~~Dd~--~~~~~~L~~~~~k~ilyl 218 (310)
+..+.+..-.| .+||.|+...- +.. .+ ..+...++.+. ..|..+|-+ +.+...|+. + +-++
T Consensus 27 ~~~a~~~~~~GAdiIDvG~~st~--p~~~~~~~~~E~~rl~~~v~~l~~~~~~piSIDT~~~~v~~aaL~~--g--~~iI 100 (258)
T cd00423 27 LEHARRMVEEGADIIDIGGESTR--PGAEPVSVEEELERVIPVLRALAGEPDVPISVDTFNAEVAEAALKA--G--ADII 100 (258)
T ss_pred HHHHHHHHHCCCCEEEECCCcCC--CCCCcCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCcHHHHHHHHHh--C--CCEE
Confidence 44445555554 67799975530 000 01 11333344433 456777653 556666654 2 5578
Q ss_pred ecCCCcchhcchHHHHHHHHhCCCEEEEEe-cCCCcc--c----cCChHHHHHHHHHhhhhhhhccCccccceEEecCCC
Q 021582 219 VDNSGADIILGILPFARELLRRGTQVILAA-NDLPSI--N----DVTYPELIEIMSKLKDEKGQLMGVDTSKLLIANSGN 291 (310)
Q Consensus 219 ~DNaGediVfD~Lpli~~L~~~g~~V~l~v-k~~P~l--N----DaT~~d~~~~l~~~a~~~~~l~gl~~~~~~Vi~sG~ 291 (310)
-|=+|+ - .|.- +++..++.|..|++.. ++.|.- . .-+.++..+.+++...+... .|+.... .|++-|.
T Consensus 101 Ndis~~-~-~~~~-~~~l~~~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~Gi~~~~-IilDPg~ 175 (258)
T cd00423 101 NDVSGG-R-GDPE-MAPLAAEYGAPVVLMHMDGTPQTMQNNPYYADVVDEVVEFLEERVEAATE-AGIPPED-IILDPGI 175 (258)
T ss_pred EeCCCC-C-CChH-HHHHHHHcCCCEEEECcCCCCcccccCCCcchHHHHHHHHHHHHHHHHHH-cCCCHHH-EEEeCCC
Confidence 888887 2 2232 5677778898887776 555541 1 22344445555554443332 2665433 7889888
Q ss_pred CCCC
Q 021582 292 DLPV 295 (310)
Q Consensus 292 ~~pg 295 (310)
+.+.
T Consensus 176 g~~k 179 (258)
T cd00423 176 GFGK 179 (258)
T ss_pred CccC
Confidence 7654
No 37
>PRK07454 short chain dehydrogenase; Provisional
Probab=31.43 E-value=68 Score=28.27 Aligned_cols=34 Identities=24% Similarity=0.250 Sum_probs=26.4
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 021582 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (310)
Q Consensus 213 k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~ 251 (310)
|++++.+= +|. ++.. +++.|+++|.+|+++.|..
T Consensus 7 k~vlItG~-sg~---iG~~-la~~l~~~G~~V~~~~r~~ 40 (241)
T PRK07454 7 PRALITGA-SSG---IGKA-TALAFAKAGWDLALVARSQ 40 (241)
T ss_pred CEEEEeCC-Cch---HHHH-HHHHHHHCCCEEEEEeCCH
Confidence 56666654 443 4887 9999999999999999864
No 38
>PRK00016 metal-binding heat shock protein; Provisional
Probab=31.26 E-value=1.2e+02 Score=26.34 Aligned_cols=68 Identities=13% Similarity=0.071 Sum_probs=42.3
Q ss_pred hhhcHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhccCCCCCCCCChhHHHHHHHHHHHHHHcCCccchHHH
Q 021582 49 FLNSIPSFKKRAESDPTVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKV 123 (310)
Q Consensus 49 ~~~ci~c~~~qa~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~p~~~~~~~~~r~~~~l~~~~~~~~g~~DPy~~~ 123 (310)
..=|++-..+||....... .+..-.+.-+-.-+|.-++ +.++...+.+....+.+++.+|+.+||...
T Consensus 91 I~Is~~~~~~qa~~~~~s~--~~e~~~l~iHG~LHLlGYD-----H~~~~e~~~M~~~E~~il~~l~~~~~~~~~ 158 (159)
T PRK00016 91 IVICPEVAEEQAEEQGHSL--ERELAHLTVHGILHLLGYD-----HIEDEEAEEMFGLEEEILAALGLPRPYIAE 158 (159)
T ss_pred EEEcHHHHHHHHHHcCCCH--HHHHHHHHHHhhHHhcCCC-----CCChHHHHHHHHHHHHHHHHcCCCCccccc
Confidence 4458888899987655432 2223333333333443444 334434567888889999999999999653
No 39
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=31.25 E-value=1.3e+02 Score=26.60 Aligned_cols=29 Identities=14% Similarity=0.332 Sum_probs=23.5
Q ss_pred EEEecCCCcchhcchHHHHHHHHhCCCEEEEEe
Q 021582 216 VIFVDNSGADIILGILPFARELLRRGTQVILAA 248 (310)
Q Consensus 216 lyl~DNaGediVfD~Lpli~~L~~~g~~V~l~v 248 (310)
++++||=+. |--- +++.|.++|.+|+++-
T Consensus 2 il~idn~ds---ft~n-l~~~l~~~g~~v~v~~ 30 (195)
T PRK07649 2 ILMIDNYDS---FTFN-LVQFLGELGQELVVKR 30 (195)
T ss_pred EEEEeCCCc---cHHH-HHHHHHHCCCcEEEEe
Confidence 578899888 5565 8899999999887765
No 40
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.
Probab=31.11 E-value=1.7e+02 Score=30.22 Aligned_cols=56 Identities=21% Similarity=0.216 Sum_probs=39.1
Q ss_pred CCCCCCCCHHHHHHHhcc--cCCCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEe
Q 021582 192 PRPWVIDDLETFKVKWSK--KAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAA 248 (310)
Q Consensus 192 ~~~~~~Dd~~~~~~~L~~--~~~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~v 248 (310)
..||...+.+...+++.. ...++|++++|.-+- -+--.+-|.+.|.+.|.+|.+..
T Consensus 32 ~~p~~l~~~~~a~~~i~~~i~~~~~I~I~gh~D~D-Gi~S~~~L~~~L~~~g~~v~~~i 89 (539)
T TIGR00644 32 PDPFLLKDMEKAVERIIEAIENNEKILIFGDYDVD-GITSTAILVEFLKDLGVNVDYYI 89 (539)
T ss_pred CChhhcCCHHHHHHHHHHHHhcCCeEEEEEccCCC-cHHHHHHHHHHHHHCCCceEEEe
Confidence 456666666655555531 126899999999774 66555558888888999988776
No 41
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=30.95 E-value=1.4e+02 Score=26.08 Aligned_cols=55 Identities=18% Similarity=0.351 Sum_probs=35.7
Q ss_pred EEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCCccccCChHHHHHHHHHhhhhhhhccCccccceEEecCCCCCC
Q 021582 216 VIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIMSKLKDEKGQLMGVDTSKLLIANSGNDLP 294 (310)
Q Consensus 216 lyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~P~lNDaT~~d~~~~l~~~a~~~~~l~gl~~~~~~Vi~sG~~~p 294 (310)
+++.||-+. |=-- +++.|.++|.+|.++-+.. .+.+++... .. ...|++-|-..|
T Consensus 2 il~id~~ds---f~~n-l~~~l~~~~~~~~v~~~~~-----~~~~~~~~~------------~~---~~iilsgGP~~~ 56 (191)
T PRK06774 2 LLLIDNYDS---FTYN-LYQYFCELGTEVMVKRNDE-----LQLTDIEQL------------AP---SHLVISPGPCTP 56 (191)
T ss_pred EEEEECCCc---hHHH-HHHHHHHCCCcEEEEeCCC-----CCHHHHHhc------------CC---CeEEEcCCCCCh
Confidence 578899887 4444 7788988999998665332 355554432 22 247777776665
No 42
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=30.90 E-value=1.5e+02 Score=28.98 Aligned_cols=64 Identities=28% Similarity=0.344 Sum_probs=39.3
Q ss_pred CHHHHHHHhcccCCCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCCccccCChHHHHHHHHH
Q 021582 199 DLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIMSK 268 (310)
Q Consensus 199 d~~~~~~~L~~~~~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~P~lNDaT~~d~~~~l~~ 268 (310)
+...+.+.+.....+++++++ +|. + +.- ++..|.+.|.+|+++.++..+++-..-.++...+..
T Consensus 124 ~~~~~~~~l~~~~~~~vvViG--gG~-~--g~e-~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~ 187 (427)
T TIGR03385 124 DTDAIKQYIDKNKVENVVIIG--GGY-I--GIE-MAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEE 187 (427)
T ss_pred HHHHHHHHHhhcCCCeEEEEC--CCH-H--HHH-HHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHH
Confidence 344555555332357888885 332 2 453 778899999999999998776433222444444433
No 43
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=30.89 E-value=1.5e+02 Score=29.04 Aligned_cols=71 Identities=15% Similarity=0.117 Sum_probs=45.4
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCC-CEEEEEecCCCccccCChHHHH-HHHHHhhhhhhhccCccccceEEec-
Q 021582 212 WKKAVIFVDNSGADIILGILPFARELLRRG-TQVILAANDLPSINDVTYPELI-EIMSKLKDEKGQLMGVDTSKLLIAN- 288 (310)
Q Consensus 212 ~k~ilyl~DNaGediVfD~Lpli~~L~~~g-~~V~l~vk~~P~lNDaT~~d~~-~~l~~~a~~~~~l~gl~~~~~~Vi~- 288 (310)
.+++++++ +|| .+.+ .++.|.++| .+|+++-|..-. +.+++.. +. +.-+.+ ...||+
T Consensus 174 ~k~vLvIG--aGe---m~~l-~a~~L~~~g~~~i~v~nRt~~~---~~~~~~~~~~----------~~~~~~-~DvVIs~ 233 (338)
T PRK00676 174 KASLLFIG--YSE---INRK-VAYYLQRQGYSRITFCSRQQLT---LPYRTVVREE----------LSFQDP-YDVIFFG 233 (338)
T ss_pred CCEEEEEc--ccH---HHHH-HHHHHHHcCCCEEEEEcCCccc---cchhhhhhhh----------hhcccC-CCEEEEc
Confidence 58999998 598 4787 999999999 568888777532 3344332 11 111333 556665
Q ss_pred ---CCCCCCCCChhhhc
Q 021582 289 ---SGNDLPVRNGSAAF 302 (310)
Q Consensus 289 ---sG~~~pg~~l~~~s 302 (310)
||+..|-+....+.
T Consensus 234 t~~Tas~~p~i~~~~~~ 250 (338)
T PRK00676 234 SSESAYAFPHLSWESLA 250 (338)
T ss_pred CCcCCCCCceeeHHHHh
Confidence 67777777666543
No 44
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=30.33 E-value=1.1e+02 Score=30.29 Aligned_cols=68 Identities=25% Similarity=0.354 Sum_probs=46.3
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCCccccCChHHHHHHHHHhhhhhhhccCccccceEEecCCC
Q 021582 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIMSKLKDEKGQLMGVDTSKLLIANSGN 291 (310)
Q Consensus 212 ~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~P~lNDaT~~d~~~~l~~~a~~~~~l~gl~~~~~~Vi~sG~ 291 (310)
.++|+.+ .+|- =. =.+|.|.++|++|+++- .|.+.+|+++. .=+ ...+|||-
T Consensus 179 ~~~Vv~i--D~Gv----K~-nIlr~L~~rg~~vtVVP------~~t~~eeIl~~------------~pD---GiflSNGP 230 (368)
T COG0505 179 GKHVVVI--DFGV----KR-NILRELVKRGCRVTVVP------ADTSAEEILAL------------NPD---GIFLSNGP 230 (368)
T ss_pred CcEEEEE--EcCc----cH-HHHHHHHHCCCeEEEEc------CCCCHHHHHhh------------CCC---EEEEeCCC
Confidence 3444433 3665 33 37899999999999975 35677887766 223 47899999
Q ss_pred CCCCCChhhhcHHHHhh
Q 021582 292 DLPVRNGSAAFYFLKSL 308 (310)
Q Consensus 292 ~~pg~~l~~~s~~~~~~ 308 (310)
+-| -.++.+-+..|+|
T Consensus 231 GDP-~~~~~~i~~ik~l 246 (368)
T COG0505 231 GDP-APLDYAIETIKEL 246 (368)
T ss_pred CCh-hHHHHHHHHHHHH
Confidence 888 5566666666554
No 45
>PRK07806 short chain dehydrogenase; Provisional
Probab=30.29 E-value=87 Score=27.64 Aligned_cols=35 Identities=23% Similarity=0.236 Sum_probs=27.6
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 021582 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (310)
Q Consensus 212 ~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~ 251 (310)
.+++++.+=+.|- +.- +++.|++.|++|+++.|..
T Consensus 6 ~k~vlItGasggi----G~~-l~~~l~~~G~~V~~~~r~~ 40 (248)
T PRK07806 6 GKTALVTGSSRGI----GAD-TAKILAGAGAHVVVNYRQK 40 (248)
T ss_pred CcEEEEECCCCcH----HHH-HHHHHHHCCCEEEEEeCCc
Confidence 3677777755553 886 9999999999999988854
No 46
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=30.23 E-value=1e+02 Score=25.27 Aligned_cols=33 Identities=21% Similarity=0.393 Sum_probs=26.7
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecC
Q 021582 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAAND 250 (310)
Q Consensus 212 ~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~ 250 (310)
...+++++-.+ |.+|+++.|+++|.+|+++.-.
T Consensus 100 ~d~ivLvSgD~------Df~~~i~~lr~~G~~V~v~~~~ 132 (149)
T cd06167 100 IDTIVLVSGDS------DFVPLVERLRELGKRVIVVGFE 132 (149)
T ss_pred CCEEEEEECCc------cHHHHHHHHHHcCCEEEEEccC
Confidence 46788887665 5569999999999999988765
No 47
>PRK07577 short chain dehydrogenase; Provisional
Probab=30.11 E-value=90 Score=27.20 Aligned_cols=34 Identities=24% Similarity=0.315 Sum_probs=26.3
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 021582 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (310)
Q Consensus 213 k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~ 251 (310)
+++++.+-+.|- +.. +++.|.+.|++|+++.|..
T Consensus 4 k~vlItG~s~~i----G~~-ia~~l~~~G~~v~~~~r~~ 37 (234)
T PRK07577 4 RTVLVTGATKGI----GLA-LSLRLANLGHQVIGIARSA 37 (234)
T ss_pred CEEEEECCCCcH----HHH-HHHHHHHCCCEEEEEeCCc
Confidence 567666555443 886 9999999999999998864
No 48
>PRK05854 short chain dehydrogenase; Provisional
Probab=29.86 E-value=74 Score=29.89 Aligned_cols=35 Identities=34% Similarity=0.467 Sum_probs=29.7
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 021582 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (310)
Q Consensus 212 ~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~ 251 (310)
.+++++.+-++|- +.- +++.|.+.|.+|+++.|..
T Consensus 14 gk~~lITGas~GI----G~~-~a~~La~~G~~Vil~~R~~ 48 (313)
T PRK05854 14 GKRAVVTGASDGL----GLG-LARRLAAAGAEVILPVRNR 48 (313)
T ss_pred CCEEEEeCCCChH----HHH-HHHHHHHCCCEEEEEeCCH
Confidence 4788888888775 897 9999999999999999863
No 49
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=29.85 E-value=1.5e+02 Score=28.76 Aligned_cols=63 Identities=16% Similarity=0.183 Sum_probs=41.9
Q ss_pred CCCHHHHHHHhcccCCCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCCccccCChHHHHHHHH
Q 021582 197 IDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIMS 267 (310)
Q Consensus 197 ~Dd~~~~~~~L~~~~~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~P~lNDaT~~d~~~~l~ 267 (310)
.+|...+.+.+.. .+++++++. |. + ++= ++..|.+.|.+|+++-++..++....-.++...+.
T Consensus 131 ~~da~~l~~~~~~--~~~vvViGg--G~-i--g~E-~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~ 193 (396)
T PRK09754 131 AGDAARLREVLQP--ERSVVIVGA--GT-I--GLE-LAASATQRRCKVTVIELAATVMGRNAPPPVQRYLL 193 (396)
T ss_pred HHHHHHHHHHhhc--CCeEEEECC--CH-H--HHH-HHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHH
Confidence 3455666666654 688999973 43 2 553 78888899999999988877665444444444333
No 50
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=29.82 E-value=1.4e+02 Score=31.32 Aligned_cols=72 Identities=8% Similarity=-0.061 Sum_probs=46.4
Q ss_pred CCCCCCCCHHHHHHHhcc--cCCCeEEEEecCCCcchhcchHHHHHHHHhCCC-EEEEEecCC----CccccCChHHHHH
Q 021582 192 PRPWVIDDLETFKVKWSK--KAWKKAVIFVDNSGADIILGILPFARELLRRGT-QVILAANDL----PSINDVTYPELIE 264 (310)
Q Consensus 192 ~~~~~~Dd~~~~~~~L~~--~~~k~ilyl~DNaGediVfD~Lpli~~L~~~g~-~V~l~vk~~----P~lNDaT~~d~~~ 264 (310)
..|+...|.+...+++.. ...++|++++|----=|---.+ +.+.|.+.|. .|.+.+... --+|..+.+.+.+
T Consensus 47 ~~P~~l~~m~~a~~ri~~ai~~~e~I~I~gDyD~DGitstai-l~~~L~~~g~~~~~~~IP~R~~eGYGl~~~~i~~~~~ 125 (575)
T PRK11070 47 LPWQQLSGIEKAVELLYNALREGTRIIVVGDFDADGATSTAL-SVLALRSLGCSNVDYLVPNRFEDGYGLSPEVVDQAHA 125 (575)
T ss_pred CChHHhhCHHHHHHHHHHHHHCCCEEEEEEecCccHHHHHHH-HHHHHHHcCCCceEEEeCCCCcCCCCCCHHHHHHHHh
Confidence 456777777766666632 1258999999864421444444 8889999998 687766532 2388776666543
No 51
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=29.73 E-value=2.7e+02 Score=21.79 Aligned_cols=55 Identities=18% Similarity=0.118 Sum_probs=35.9
Q ss_pred CCCCCCHHHHHHHhcccCCCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecC
Q 021582 194 PWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAAND 250 (310)
Q Consensus 194 ~~~~Dd~~~~~~~L~~~~~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~ 250 (310)
...+++.+.........+.+.++++...+|+ -- +.+-+++.++++|.+|++....
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~i~iS~~g~-~~-~~~~~~~~a~~~g~~iv~iT~~ 96 (139)
T cd05013 42 VVLLSDPHLQLMSAANLTPGDVVIAISFSGE-TK-ETVEAAEIAKERGAKVIAITDS 96 (139)
T ss_pred eEEecCHHHHHHHHHcCCCCCEEEEEeCCCC-CH-HHHHHHHHHHHcCCeEEEEcCC
Confidence 3445555555544432234689999999998 33 3333677888889998877664
No 52
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=29.64 E-value=1.1e+02 Score=29.87 Aligned_cols=41 Identities=24% Similarity=0.216 Sum_probs=26.3
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEE-EecCCCccc
Q 021582 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVIL-AANDLPSIN 255 (310)
Q Consensus 213 k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l-~vk~~P~lN 255 (310)
+++++++|..=.+...+. +.+.|.+.|.++++ .+.+.|..+
T Consensus 30 ~~~livtd~~~~~~~~~~--v~~~l~~~~~~~~~~~~~~ep~~~ 71 (366)
T PRK09423 30 KRALVIADEFVLGIVGDR--VEASLKEAGLTVVFEVFNGECSDN 71 (366)
T ss_pred CEEEEEEChhHHHHHHHH--HHHHHHhCCCeEEEEEeCCCCCHH
Confidence 789999985433344444 56677777877643 566767654
No 53
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=29.49 E-value=5e+02 Score=25.95 Aligned_cols=70 Identities=23% Similarity=0.197 Sum_probs=41.2
Q ss_pred HHhhhcCCCC--CCCCHHHHHHHhcccCCCeEEEEe-cCCCcchhcchHH---HHHHHHhCCCEEEEEecC-CCccccC
Q 021582 186 SCQNLVPRPW--VIDDLETFKVKWSKKAWKKAVIFV-DNSGADIILGILP---FARELLRRGTQVILAAND-LPSINDV 257 (310)
Q Consensus 186 ~~~~~~~~~~--~~Dd~~~~~~~L~~~~~k~ilyl~-DNaGediVfD~Lp---li~~L~~~g~~V~l~vk~-~P~lNDa 257 (310)
.++.+..|+. .+.|.+.+.+.+.+ .+..+|.+ |-+|..+-+|=+. .++.|++.|+++++.+=+ +..++|-
T Consensus 6 ~l~~l~~Rg~~~~~~~~~~l~~~l~~--~~~~vy~G~dPTg~slHlGhlv~l~~l~~lQ~~G~~~~~ligd~ta~igDp 82 (408)
T PRK05912 6 LLEELKERGLIEQITDEEELEEKLAK--EPLRIYLGFDPTAPSLHLGHLVPLLKLRRFQDAGHKPIALIGGFTGMIGDP 82 (408)
T ss_pred HHHHHHhCCCeeecCCHHHHHHHhhC--CCCEEEEeecCCCCCccHHhHHHHHHHHHHHHCCCcEEEEEcCceeEcCCC
Confidence 3344333543 34567788888864 34456666 8899546666431 445566679887766644 3335553
No 54
>PF05226 CHASE2: CHASE2 domain; InterPro: IPR007890 CHASE2 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in bacteria. Specifically, CHASE2 domains are found in histidine kinases, adenylate cyclases, serine/threonine kinases and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE2 domains are not known at this time [].
Probab=29.48 E-value=1.6e+02 Score=27.52 Aligned_cols=64 Identities=22% Similarity=0.215 Sum_probs=45.2
Q ss_pred HHHhhhcCCCCCCCCHHHHHHHhcccCCCeEE--EEecCCCcc-hhcchHHHHHHHHhCCCEEEEEec
Q 021582 185 ASCQNLVPRPWVIDDLETFKVKWSKKAWKKAV--IFVDNSGAD-IILGILPFARELLRRGTQVILAAN 249 (310)
Q Consensus 185 ~~~~~~~~~~~~~Dd~~~~~~~L~~~~~k~il--yl~DNaGed-iVfD~Lpli~~L~~~g~~V~l~vk 249 (310)
+.++++-.-||..+.+..+.++|.+.+++.|. ++-+..+.. -..|.. |++.|.+.|.+|++.+-
T Consensus 51 ~Sl~~~g~~Pw~R~~~A~ll~~L~~~ga~~I~~Di~f~~~~~~~~~~D~~-la~al~~~~~~vvl~~~ 117 (310)
T PF05226_consen 51 ESLAELGRWPWPRSVYARLLDRLAAAGAKAIGFDILFDEPDPSNPEGDQA-LAEALRRAGNRVVLASV 117 (310)
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhCCCCEEEEEeeecCCCCCCchHHHH-HHHHHHhCCCeEEEEEe
Confidence 44555445799999999999999765567643 233444420 137997 99999999988988754
No 55
>PF08328 ASL_C: Adenylosuccinate lyase C-terminal; InterPro: IPR013539 This domain is found at the C terminus of adenylosuccinate lyase(ASL; PurB in Escherichia coli). It has been identified in bacteria, eukaryotes and archaea and is found together with the lyase domain IPR000362 from INTERPRO. ASL catalyses the cleavage of succinylaminoimidazole carboxamide ribotide to aminoimidazole carboxamide ribotide and fumarate and the cleavage of adenylosuccinate to adenylate and fumarate []. ; GO: 0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, 0006188 IMP biosynthetic process; PDB: 2HVG_A 2QGA_C 2PTS_A 2PTR_A 2PTQ_B 3BHG_A 3GZH_A.
Probab=29.38 E-value=46 Score=27.63 Aligned_cols=42 Identities=21% Similarity=0.347 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHHHHHHHhhh
Q 021582 102 LLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDV 144 (310)
Q Consensus 102 ~~~~l~~~~~~~~g~~DPy~~~K~~~N~~Al~~~~~l~~~ld~ 144 (310)
++.+-.+.+++..|++|||-..|+.-.-... --+.+.++|++
T Consensus 54 VlaEpIQTvmRr~g~~~pYE~LK~lTRg~~i-t~~~l~~fI~~ 95 (115)
T PF08328_consen 54 VLAEPIQTVMRRYGIPNPYEKLKELTRGKKI-TKEDLREFIES 95 (115)
T ss_dssp GGHHHHHHHHHHTT-SSHHHHHHHHHTTS----HHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHcCCCC-CHHHHHHHHHh
Confidence 5677778899999999999999986543311 11444455543
No 56
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=28.96 E-value=1.6e+02 Score=28.39 Aligned_cols=58 Identities=21% Similarity=0.331 Sum_probs=37.5
Q ss_pred CHHHHHHHhcccCCCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCCccccCChHHHHH
Q 021582 199 DLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIE 264 (310)
Q Consensus 199 d~~~~~~~L~~~~~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~P~lNDaT~~d~~~ 264 (310)
++..+.+.+.. .+++++++ +|. + +.= ++..|.+.|.+|+++.++..++....-.++..
T Consensus 130 ~~~~~~~~~~~--~~~vvViG--gG~-~--g~e-~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~ 187 (377)
T PRK04965 130 EYRAAETQLRD--AQRVLVVG--GGL-I--GTE-LAMDLCRAGKAVTLVDNAASLLASLMPPEVSS 187 (377)
T ss_pred HHHHHHHHhhc--CCeEEEEC--CCH-H--HHH-HHHHHHhcCCeEEEEecCCcccchhCCHHHHH
Confidence 34444444444 68899998 443 3 443 77888899999999998876654433344443
No 57
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=28.82 E-value=82 Score=26.45 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=21.6
Q ss_pred cchHHHHHHHHhCCCEEEEEecCCCc
Q 021582 228 LGILPFARELLRRGTQVILAANDLPS 253 (310)
Q Consensus 228 fD~Lpli~~L~~~g~~V~l~vk~~P~ 253 (310)
.+.. ++++|++.|++|+..+|+..=
T Consensus 10 vG~~-l~~~L~~~~~~V~~~~R~~~~ 34 (183)
T PF13460_consen 10 VGRA-LAKQLLRRGHEVTALVRSPSK 34 (183)
T ss_dssp HHHH-HHHHHHHTTSEEEEEESSGGG
T ss_pred HHHH-HHHHHHHCCCEEEEEecCchh
Confidence 4775 999999999999999998763
No 58
>PRK06139 short chain dehydrogenase; Provisional
Probab=28.73 E-value=2e+02 Score=27.39 Aligned_cols=35 Identities=37% Similarity=0.448 Sum_probs=27.4
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCC
Q 021582 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLP 252 (310)
Q Consensus 213 k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~P 252 (310)
+++++.+=.+|- +.- +++.|.++|.+|+++.|+..
T Consensus 8 k~vlITGAs~GI----G~a-ia~~la~~G~~Vvl~~R~~~ 42 (330)
T PRK06139 8 AVVVITGASSGI----GQA-TAEAFARRGARLVLAARDEE 42 (330)
T ss_pred CEEEEcCCCCHH----HHH-HHHHHHHCCCEEEEEECCHH
Confidence 566666665554 896 99999999999999988643
No 59
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=28.27 E-value=4.9e+02 Score=24.15 Aligned_cols=133 Identities=14% Similarity=0.063 Sum_probs=73.3
Q ss_pred HHHHHHHHHHh-hhhhhcchhhhhhhccCcccHHHH---HhhhcCCCCCCCCH--HHHHHHhcccCCCeEEEEecCCCcc
Q 021582 152 VESLIRGIFAG-NIFDLGSAQLAEVFSKDGMSFLAS---CQNLVPRPWVIDDL--ETFKVKWSKKAWKKAVIFVDNSGAD 225 (310)
Q Consensus 152 l~~alr~alaG-N~iD~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~Dd~--~~~~~~L~~~~~k~ilyl~DNaGed 225 (310)
+..+.+..-.| .+||.|.... ...+ ...+... +......|+.+|-+ +.+...|+. +.-.-++-|-+|+.
T Consensus 29 ~~~A~~~~~~GAdiIDIG~~~~-~~~~--~ee~~r~v~~i~~~~~~piSIDT~~~~v~e~aL~~--~~G~~iINsIs~~~ 103 (252)
T cd00740 29 LDVARQQVEGGAQILDLNVDYG-GLDG--VSAMKWLLNLLATEPTVPLMLDSTNWEVIEAGLKC--CQGKCVVNSINLED 103 (252)
T ss_pred HHHHHHHHHCCCCEEEECCCCC-CCCH--HHHHHHHHHHHHHhcCCcEEeeCCcHHHHHHHHhh--CCCCcEEEeCCCCC
Confidence 44455554454 6779987431 1100 1122223 44444678888765 445555543 23466888988872
Q ss_pred --hhcchHHHHHHHHhCCCEEEEEec---CCCccccCChHHHHHHHHHhhhhhhhccCccccceEEecCCCCCCCC
Q 021582 226 --IILGILPFARELLRRGTQVILAAN---DLPSINDVTYPELIEIMSKLKDEKGQLMGVDTSKLLIANSGNDLPVR 296 (310)
Q Consensus 226 --iVfD~Lpli~~L~~~g~~V~l~vk---~~P~lNDaT~~d~~~~l~~~a~~~~~l~gl~~~~~~Vi~sG~~~pg~ 296 (310)
=-++. +++.+.+.|..|++... +.| .|.++-.+++++....-..-.|+.... .+++-|..-+++
T Consensus 104 ~~e~~~~--~~~~~~~~~~~vV~m~~~~~g~p----~t~~~~~~~~~~~~~~~~~~~gi~~~~-IiiDPgig~~~~ 172 (252)
T cd00740 104 GEERFLK--VARLAKEHGAAVVVLAFDEQGQA----KTRDKKVEIAERAYEALTEFVGFPPED-IIFDPLILPIAT 172 (252)
T ss_pred CccccHH--HHHHHHHhCCCEEEeccCCCCCC----CCHHHHHHHHHHHHHHHHHHcCCCHHH-EEEeCCcccccC
Confidence 01333 44667788988877764 333 455554455554444333334565433 788988887775
No 60
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=27.91 E-value=84 Score=25.05 Aligned_cols=36 Identities=19% Similarity=0.245 Sum_probs=27.3
Q ss_pred eEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCCc
Q 021582 214 KAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPS 253 (310)
Q Consensus 214 ~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~P~ 253 (310)
+|||+++-... . .. .+++.|.+.|++|+++.-+...
T Consensus 1 KIl~i~~~~~~-~--~~-~~~~~L~~~g~~V~ii~~~~~~ 36 (139)
T PF13477_consen 1 KILLIGNTPST-F--IY-NLAKELKKRGYDVHIITPRNDY 36 (139)
T ss_pred CEEEEecCcHH-H--HH-HHHHHHHHCCCEEEEEEcCCCc
Confidence 57888877654 3 33 5899999999999998876654
No 61
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=27.77 E-value=67 Score=32.06 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=25.4
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEe
Q 021582 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAA 248 (310)
Q Consensus 213 k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~v 248 (310)
|||+++ |.|+ + .+ ++++.++++|++|+.+-
T Consensus 3 kkili~--g~g~-~--~~-~~~~aa~~lG~~vv~~~ 32 (449)
T TIGR00514 3 DKILIA--NRGE-I--AL-RILRACKELGIKTVAVH 32 (449)
T ss_pred ceEEEe--CCCH-H--HH-HHHHHHHHcCCeEEEEE
Confidence 688888 9998 5 45 79999999999998874
No 62
>PLN00016 RNA-binding protein; Provisional
Probab=27.60 E-value=1e+02 Score=29.76 Aligned_cols=40 Identities=33% Similarity=0.503 Sum_probs=32.1
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCC
Q 021582 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLP 252 (310)
Q Consensus 212 ~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~P 252 (310)
.++|+++.=|+|.==.+|.- +++.|++.|++|+.++|+..
T Consensus 52 ~~~VLVt~~~~GatG~iG~~-lv~~L~~~G~~V~~l~R~~~ 91 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFY-LAKELVKAGHEVTLFTRGKE 91 (378)
T ss_pred cceEEEEeccCCCceeEhHH-HHHHHHHCCCEEEEEecCCc
Confidence 46788886666654467896 99999999999999998753
No 63
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=27.55 E-value=7e+02 Score=27.01 Aligned_cols=111 Identities=16% Similarity=0.197 Sum_probs=66.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHhhhhhhcchhhhhhhccCcccHHHHHhhhcCCCC--
Q 021582 118 DIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPW-- 195 (310)
Q Consensus 118 DPy~~~K~~~N~~Al~~~~~l~~~ld~~~~~~d~l~~alr~alaGN~iD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 195 (310)
.-.+.+|+.-.++.+.++..+.+. .+.+.. -..--|..+=.|+.. ++...+.+.+++.-.=
T Consensus 379 ~~l~~i~~~i~~ki~~~l~~la~~-------~~~y~~--f~~~~g~~lK~G~~~--------D~~~~~~l~~Llrf~ss~ 441 (701)
T PTZ00272 379 KILKVIRKNIVKKCLEMFDEVAEN-------KEDYKQ--FYEQFGKNIKLGIHE--------DTANRKKLMELLRFYSTE 441 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhC-------HHHHHH--HHHHHhhhhheeecc--------CHhHHHHHHHhhceeecC
Confidence 346677777777777776666431 122221 223455555555532 2333444444332100
Q ss_pred ---CCCCHHHHHHHhcccCCCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEe
Q 021582 196 ---VIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAA 248 (310)
Q Consensus 196 ---~~Dd~~~~~~~L~~~~~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~v 248 (310)
..-.++...+++.. +.+.|.|++.++=+ .+--- |+++.++++|.+|+++.
T Consensus 442 ~~~~~~sL~eYv~rmk~-~Q~~IYY~~~~s~~-~~~~s-P~lE~~~~kg~EVL~l~ 494 (701)
T PTZ00272 442 SGEEMTTLKDYVTRMKA-GQKSIYYITGDSKK-KLETS-PFIEQARRRGLEVLFMT 494 (701)
T ss_pred CCCceeeHHHHHHhhcc-CCceEEEEeCCCHH-HHHhC-hHHHHHHhCCCeEEEeC
Confidence 11246777777764 35789999987776 66666 89999999999999883
No 64
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=27.36 E-value=1.3e+02 Score=25.84 Aligned_cols=37 Identities=16% Similarity=0.227 Sum_probs=28.0
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecC
Q 021582 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAAND 250 (310)
Q Consensus 212 ~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~ 250 (310)
.+.++++...+|+ -- +.+-.++.++++|.+|+.....
T Consensus 72 ~~Dv~I~iS~sG~-t~-~~i~~~~~ak~~g~~ii~IT~~ 108 (179)
T TIGR03127 72 KGDLLIAISGSGE-TE-SLVTVAKKAKEIGATVAAITTN 108 (179)
T ss_pred CCCEEEEEeCCCC-cH-HHHHHHHHHHHCCCeEEEEECC
Confidence 4679999999998 43 2333677888899999888763
No 65
>PRK05670 anthranilate synthase component II; Provisional
Probab=27.28 E-value=95 Score=27.08 Aligned_cols=30 Identities=20% Similarity=0.390 Sum_probs=23.3
Q ss_pred EEEecCCCcchhcchHHHHHHHHhCCCEEEEEec
Q 021582 216 VIFVDNSGADIILGILPFARELLRRGTQVILAAN 249 (310)
Q Consensus 216 lyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk 249 (310)
+++.||..+ |-. .+++.|.++|.+|+++-.
T Consensus 2 iliid~~d~---f~~-~i~~~l~~~g~~~~v~~~ 31 (189)
T PRK05670 2 ILLIDNYDS---FTY-NLVQYLGELGAEVVVYRN 31 (189)
T ss_pred EEEEECCCc---hHH-HHHHHHHHCCCcEEEEEC
Confidence 578899988 445 378999999999877654
No 66
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=27.26 E-value=96 Score=27.10 Aligned_cols=35 Identities=29% Similarity=0.295 Sum_probs=27.9
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 021582 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (310)
Q Consensus 212 ~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~ 251 (310)
.+++++.+=+.|- +.. +++.|.+.|.+|+++.|+.
T Consensus 5 ~~~vlItGa~g~i----G~~-~a~~l~~~G~~V~~~~r~~ 39 (238)
T PRK05786 5 GKKVAIIGVSEGL----GYA-VAYFALKEGAQVCINSRNE 39 (238)
T ss_pred CcEEEEECCCchH----HHH-HHHHHHHCCCEEEEEeCCH
Confidence 4677777766554 886 9999999999999999854
No 67
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=27.19 E-value=75 Score=28.40 Aligned_cols=36 Identities=31% Similarity=0.421 Sum_probs=27.7
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCC
Q 021582 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLP 252 (310)
Q Consensus 212 ~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~P 252 (310)
.+++++.+=+.| ++.- +++.|.++|++|+++.|+.+
T Consensus 12 ~k~ilItGa~g~----IG~~-la~~l~~~G~~V~~~~r~~~ 47 (259)
T PRK08213 12 GKTALVTGGSRG----LGLQ-IAEALGEAGARVVLSARKAE 47 (259)
T ss_pred CCEEEEECCCch----HHHH-HHHHHHHcCCEEEEEeCCHH
Confidence 367777764443 3886 99999999999999988654
No 68
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=26.72 E-value=98 Score=26.71 Aligned_cols=31 Identities=32% Similarity=0.417 Sum_probs=23.1
Q ss_pred CCeEEEEe--cCCCcchhcchHHHHHHHHhCCCEEEE
Q 021582 212 WKKAVIFV--DNSGADIILGILPFARELLRRGTQVIL 246 (310)
Q Consensus 212 ~k~ilyl~--DNaGediVfD~Lpli~~L~~~g~~V~l 246 (310)
.++|++|+ -|-|. |-+-.+|+|.++|.+|++
T Consensus 25 ~~~v~il~G~GnNGg----Dgl~~AR~L~~~G~~V~v 57 (169)
T PF03853_consen 25 GPRVLILCGPGNNGG----DGLVAARHLANRGYNVTV 57 (169)
T ss_dssp T-EEEEEE-SSHHHH----HHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEEECCCCChH----HHHHHHHHHHHCCCeEEE
Confidence 57899998 44444 444599999999999887
No 69
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=26.44 E-value=1e+02 Score=27.01 Aligned_cols=34 Identities=21% Similarity=0.203 Sum_probs=26.1
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecC
Q 021582 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAAND 250 (310)
Q Consensus 212 ~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~ 250 (310)
.+++++.+ -+|. ++.- +++.|+++|.+|++++|.
T Consensus 6 ~~~ilItG-asg~---iG~~-l~~~l~~~g~~V~~~~r~ 39 (251)
T PRK12826 6 GRVALVTG-AARG---IGRA-IAVRLAADGAEVIVVDIC 39 (251)
T ss_pred CCEEEEcC-CCCc---HHHH-HHHHHHHCCCEEEEEeCC
Confidence 35666554 4555 3885 999999999999999986
No 70
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=26.40 E-value=6.8e+02 Score=26.74 Aligned_cols=115 Identities=15% Similarity=0.186 Sum_probs=63.9
Q ss_pred cCCccchHHHHHHHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHhhhhhhcchhhhhhhccCcccHHHHHhhhcCC
Q 021582 114 LGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPR 193 (310)
Q Consensus 114 ~g~~DPy~~~K~~~N~~Al~~~~~l~~~ld~~~~~~d~l~~alr~alaGN~iD~g~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (310)
+--+.-++.+|+..-++.+..+..+.+.= .+.+.+.. .--|..+=.|+.. ++.+.+.+.+++.-
T Consensus 336 LQ~n~~l~~Irk~l~kkvl~~L~~La~~~------~e~y~~f~--~~fg~~LKeG~~e--------D~~n~e~l~~lLrf 399 (623)
T COG0326 336 LQQNRILAAIRKALTKKVLSMLEKLAKDD------PEKYRKFW--KQFGLVLKEGLYE--------DFENKEKLLDLLRF 399 (623)
T ss_pred HccCHHHHHHHHHHHHHHHHHHHHHHhcC------HHHHHHHH--HHHHHHHHhhhhh--------hhhhHHHHHhhhEe
Confidence 33355688888888888877776665431 12222211 1223444334322 23333344333221
Q ss_pred CCCCC------CHHHHHHHhcccCCCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEE
Q 021582 194 PWVID------DLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILA 247 (310)
Q Consensus 194 ~~~~D------d~~~~~~~L~~~~~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~ 247 (310)
.=.-+ .++...+++.. +-+.|.|++.++=. .+-.. |.++..+..|.+|.+.
T Consensus 400 ~St~~~~~~~~sl~eYv~rmke-~q~~IyY~tges~~-~~~~s-P~lE~~k~kgieVL~l 456 (623)
T COG0326 400 RSTSDSGEKTVSLEEYVSRMKE-GQKQIYYITGESYQ-AAKGS-PHLELFKAKGIEVLLL 456 (623)
T ss_pred cccCCCccCcccHHHHHHhccc-ccceeEEeccccHH-HHhcC-chHHHHHhcCcEEEec
Confidence 11011 34444555543 35789999988887 77777 8888888888888764
No 71
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=26.30 E-value=96 Score=28.25 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=20.6
Q ss_pred chHHHHHHHHhCCCEEEEEecCCCcc
Q 021582 229 GILPFARELLRRGTQVILAANDLPSI 254 (310)
Q Consensus 229 D~Lpli~~L~~~g~~V~l~vk~~P~l 254 (310)
+.. ++++.+++||+||-.||..-=+
T Consensus 13 Gs~-i~~EA~~RGHeVTAivRn~~K~ 37 (211)
T COG2910 13 GSR-ILKEALKRGHEVTAIVRNASKL 37 (211)
T ss_pred HHH-HHHHHHhCCCeeEEEEeChHhc
Confidence 665 8999999999999999875443
No 72
>PRK07904 short chain dehydrogenase; Provisional
Probab=26.22 E-value=87 Score=28.27 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=28.3
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCC-CEEEEEecCCC
Q 021582 212 WKKAVIFVDNSGADIILGILPFARELLRRG-TQVILAANDLP 252 (310)
Q Consensus 212 ~k~ilyl~DNaGediVfD~Lpli~~L~~~g-~~V~l~vk~~P 252 (310)
.+++++.+=+.|- +.- +++.|.+.| .+|++++|...
T Consensus 8 ~~~vlItGas~gi----G~~-la~~l~~~gg~~V~~~~r~~~ 44 (253)
T PRK07904 8 PQTILLLGGTSEI----GLA-ICERYLKNAPARVVLAALPDD 44 (253)
T ss_pred CcEEEEEcCCcHH----HHH-HHHHHHhcCCCeEEEEeCCcc
Confidence 4677777776664 996 999999985 89999988654
No 73
>PRK12937 short chain dehydrogenase; Provisional
Probab=26.13 E-value=95 Score=27.20 Aligned_cols=36 Identities=25% Similarity=0.278 Sum_probs=26.2
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCC
Q 021582 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLP 252 (310)
Q Consensus 212 ~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~P 252 (310)
.+++++.+=+.| ++.- +++.|.++|.+|++..++.+
T Consensus 5 ~~~vlItG~~~~----iG~~-la~~l~~~g~~v~~~~~~~~ 40 (245)
T PRK12937 5 NKVAIVTGASRG----IGAA-IARRLAADGFAVAVNYAGSA 40 (245)
T ss_pred CCEEEEeCCCch----HHHH-HHHHHHHCCCEEEEecCCCH
Confidence 356666555444 3887 99999999999988877543
No 74
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=26.03 E-value=1.5e+02 Score=29.14 Aligned_cols=65 Identities=14% Similarity=0.165 Sum_probs=36.7
Q ss_pred CCCHHHHHHHhcccCCCeEEEEecCCCcch-hcchHHHHHHHHhCCCEEEEE--ecCCCccccCChHHHHHHHHH
Q 021582 197 IDDLETFKVKWSKKAWKKAVIFVDNSGADI-ILGILPFARELLRRGTQVILA--ANDLPSINDVTYPELIEIMSK 268 (310)
Q Consensus 197 ~Dd~~~~~~~L~~~~~k~ilyl~DNaGedi-VfD~Lpli~~L~~~g~~V~l~--vk~~P~lNDaT~~d~~~~l~~ 268 (310)
.+-+..+-+.+.+-+.+++++++|..=... ++|. +.+.|.+.|.++++. ++. +-|.+.+.+..+.
T Consensus 16 ~g~~~~l~~~~~~~g~~~~livt~~~~~~~g~~~~--v~~~L~~~~i~~~~f~~v~~-----np~~~~v~~~~~~ 83 (383)
T PRK09860 16 ADSLTDAMNMMADYGFTRTLIVTDNMLTKLGMAGD--VQKALEERNIFSVIYDGTQP-----NPTTENVAAGLKL 83 (383)
T ss_pred cCHHHHHHHHHHhcCCCEEEEEcCcchhhCccHHH--HHHHHHHcCCeEEEeCCCCC-----CcCHHHHHHHHHH
Confidence 344555555554434689999999622111 3454 577777778776544 333 3455555555433
No 75
>PRK08703 short chain dehydrogenase; Provisional
Probab=25.94 E-value=1.1e+02 Score=26.80 Aligned_cols=36 Identities=28% Similarity=0.305 Sum_probs=27.9
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCC
Q 021582 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLP 252 (310)
Q Consensus 212 ~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~P 252 (310)
.+++++.+-+.| ++.- +++.|+++|.+|+++.|...
T Consensus 6 ~k~vlItG~sgg----iG~~-la~~l~~~g~~V~~~~r~~~ 41 (239)
T PRK08703 6 DKTILVTGASQG----LGEQ-VAKAYAAAGATVILVARHQK 41 (239)
T ss_pred CCEEEEECCCCc----HHHH-HHHHHHHcCCEEEEEeCChH
Confidence 367777765443 4886 99999999999999998653
No 76
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=25.93 E-value=1.2e+02 Score=29.75 Aligned_cols=40 Identities=18% Similarity=0.029 Sum_probs=29.2
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCC
Q 021582 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLP 252 (310)
Q Consensus 212 ~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~P 252 (310)
.|+|.+++.+-+. .-.=+..+++.|.+.|++|+++..+++
T Consensus 3 ~~~~~~~~~~~~~-~~~R~~~~a~~L~~~G~~V~ii~~~~~ 42 (415)
T cd03816 3 RKRVCVLVLGDIG-RSPRMQYHALSLAKHGWKVDLVGYLET 42 (415)
T ss_pred ccEEEEEEecccC-CCHHHHHHHHHHHhcCceEEEEEecCC
Confidence 5788888877664 433344578899999999999886654
No 77
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=25.87 E-value=1.1e+02 Score=27.79 Aligned_cols=37 Identities=19% Similarity=0.348 Sum_probs=25.3
Q ss_pred eEEEEec--------CCCc-chhcchHHHHHHHHhCCCEEEEEecCCC
Q 021582 214 KAVIFVD--------NSGA-DIILGILPFARELLRRGTQVILAANDLP 252 (310)
Q Consensus 214 ~ilyl~D--------NaGe-diVfD~Lpli~~L~~~g~~V~l~vk~~P 252 (310)
+|+++++ +.|. +.+.-. +++.|.+.|++|+++....+
T Consensus 2 kI~~i~~~~~~~~~~~~GG~~~~~~~--l~~~L~~~g~~V~v~~~~~~ 47 (335)
T cd03802 2 RIALVAPPREPVPPPAYGGTERVVAA--LTEGLVARGHEVTLFASGDS 47 (335)
T ss_pred eEEEEcCCcccCCCcccCcHHHHHHH--HHHHHHhcCceEEEEecCCC
Confidence 6777776 3443 222232 68899999999999886665
No 78
>PRK06914 short chain dehydrogenase; Provisional
Probab=25.81 E-value=1e+02 Score=27.89 Aligned_cols=34 Identities=29% Similarity=0.391 Sum_probs=25.2
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 021582 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (310)
Q Consensus 213 k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~ 251 (310)
+++++.+- +|. ++.- +++.|.+.|++|+++.|..
T Consensus 4 k~~lItGa-sg~---iG~~-la~~l~~~G~~V~~~~r~~ 37 (280)
T PRK06914 4 KIAIVTGA-SSG---FGLL-TTLELAKKGYLVIATMRNP 37 (280)
T ss_pred CEEEEECC-Cch---HHHH-HHHHHHhCCCEEEEEeCCH
Confidence 45555554 443 3886 9999999999999998763
No 79
>PLN02335 anthranilate synthase
Probab=25.59 E-value=2.2e+02 Score=25.80 Aligned_cols=59 Identities=17% Similarity=0.246 Sum_probs=37.7
Q ss_pred CCCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCCccccCChHHHHHHHHHhhhhhhhccCccccceEEecCC
Q 021582 211 AWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIMSKLKDEKGQLMGVDTSKLLIANSG 290 (310)
Q Consensus 211 ~~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~P~lNDaT~~d~~~~l~~~a~~~~~l~gl~~~~~~Vi~sG 290 (310)
++++|+++ ||=+- |--. +++.|.++|..+.++-.. +.+.+++... + ....||+.|
T Consensus 17 ~~~~ilvi-D~~ds---ft~~-i~~~L~~~g~~~~v~~~~-----~~~~~~~~~~--------------~-~d~iVisgG 71 (222)
T PLN02335 17 QNGPIIVI-DNYDS---FTYN-LCQYMGELGCHFEVYRND-----ELTVEELKRK--------------N-PRGVLISPG 71 (222)
T ss_pred ccCcEEEE-ECCCC---HHHH-HHHHHHHCCCcEEEEECC-----CCCHHHHHhc--------------C-CCEEEEcCC
Confidence 36778777 98444 3555 899999999988887331 1344433221 1 135888888
Q ss_pred CCCC
Q 021582 291 NDLP 294 (310)
Q Consensus 291 ~~~p 294 (310)
-..|
T Consensus 72 Pg~p 75 (222)
T PLN02335 72 PGTP 75 (222)
T ss_pred CCCh
Confidence 7777
No 80
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=25.50 E-value=4.2e+02 Score=26.15 Aligned_cols=88 Identities=23% Similarity=0.225 Sum_probs=48.3
Q ss_pred CHHHHHHHhcccCCCeEEEEe-cCCCcchhcchHH---HHHHHHhCCCEEEEEecCCCc-ccc----------CChHHHH
Q 021582 199 DLETFKVKWSKKAWKKAVIFV-DNSGADIILGILP---FARELLRRGTQVILAANDLPS-IND----------VTYPELI 263 (310)
Q Consensus 199 d~~~~~~~L~~~~~k~ilyl~-DNaGediVfD~Lp---li~~L~~~g~~V~l~vk~~P~-lND----------aT~~d~~ 263 (310)
+.+.+.+.+.+ ...+|.+ |-+|..+-+|=+. .++.|++.|++|++.+=+.-+ ++| .+.+++.
T Consensus 19 ~~~~l~~ll~~---~~~vy~G~dPTg~~lHlGh~v~l~~l~~lq~~G~~~~iligd~ta~igdpsg~~~~R~~~~~~~i~ 95 (377)
T TIGR00234 19 EEEELLKLLER---KIKLYVGFDPTAPSLHLGHLVPLLKLRDFQQAGHEVIVLLGDATALIGDPSGKSEERKLLTREEVQ 95 (377)
T ss_pred CHHHHHHHhcC---CCEEEEeeCCCCCCccHHHHHHHHHHHHHHHCCCcEEEEEeccchhhcCCCChHHHhhcCCHHHHH
Confidence 34555555543 3455555 9999447766541 345667779887766654444 888 4444444
Q ss_pred HHHHHhhhhhhhccCccccceEEecCCC
Q 021582 264 EIMSKLKDEKGQLMGVDTSKLLIANSGN 291 (310)
Q Consensus 264 ~~l~~~a~~~~~l~gl~~~~~~Vi~sG~ 291 (310)
+-.+. -.+.+..|++.....++.+..
T Consensus 96 ~n~~~--i~~~la~gld~~k~~iv~ns~ 121 (377)
T TIGR00234 96 ENAEN--IKKQIARFLDFEKAKFVNNSE 121 (377)
T ss_pred HHHHH--HHHHHHHhCChhheEEEECch
Confidence 33211 122333466644556666544
No 81
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=25.47 E-value=1e+02 Score=29.03 Aligned_cols=38 Identities=26% Similarity=0.392 Sum_probs=29.1
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 021582 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (310)
Q Consensus 213 k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~ 251 (310)
.+|++++-..|. .+.-.+-|++.|.+.|++|+++..+.
T Consensus 2 ~~i~i~~~g~gG-~~~~~~~la~~L~~~g~ev~vv~~~~ 39 (357)
T PRK00726 2 KKILLAGGGTGG-HVFPALALAEELKKRGWEVLYLGTAR 39 (357)
T ss_pred cEEEEEcCcchH-hhhHHHHHHHHHHhCCCEEEEEECCC
Confidence 368888888888 44343348999999999999887654
No 82
>PRK07326 short chain dehydrogenase; Provisional
Probab=25.31 E-value=1.2e+02 Score=26.53 Aligned_cols=34 Identities=35% Similarity=0.442 Sum_probs=26.1
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 021582 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (310)
Q Consensus 213 k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~ 251 (310)
+++++.+ .+|. ++.. +++.|+++|.+|++++|..
T Consensus 7 ~~ilItG-atg~---iG~~-la~~l~~~g~~V~~~~r~~ 40 (237)
T PRK07326 7 KVALITG-GSKG---IGFA-IAEALLAEGYKVAITARDQ 40 (237)
T ss_pred CEEEEEC-CCCc---HHHH-HHHHHHHCCCEEEEeeCCH
Confidence 4555555 5665 5887 9999999999999998754
No 83
>PRK08628 short chain dehydrogenase; Provisional
Probab=25.06 E-value=99 Score=27.51 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=27.2
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCC
Q 021582 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLP 252 (310)
Q Consensus 213 k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~P 252 (310)
+++++.+-+.| ++.- +++.|.+.|.+|+++.+..+
T Consensus 8 ~~ilItGasgg----iG~~-la~~l~~~G~~v~~~~r~~~ 42 (258)
T PRK08628 8 KVVIVTGGASG----IGAA-ISLRLAEEGAIPVIFGRSAP 42 (258)
T ss_pred CEEEEeCCCCh----HHHH-HHHHHHHcCCcEEEEcCChh
Confidence 56666665544 3886 99999999999999987665
No 84
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=25.05 E-value=1.6e+02 Score=29.29 Aligned_cols=55 Identities=16% Similarity=0.291 Sum_probs=36.5
Q ss_pred eEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCCccccCChHHHHHHHHHhhhhhhhccCccccceEEecCCCCC
Q 021582 214 KAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIMSKLKDEKGQLMGVDTSKLLIANSGNDL 293 (310)
Q Consensus 214 ~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~P~lNDaT~~d~~~~l~~~a~~~~~l~gl~~~~~~Vi~sG~~~ 293 (310)
+=+.+.|| |. -.= +++.|.++|.+|+++- ||.+.+++... .. ...|+++|-..
T Consensus 193 ~~I~viD~-g~----k~n-i~~~L~~~G~~v~vvp------~~~~~~~i~~~------------~~---dgIilSgGPg~ 245 (382)
T CHL00197 193 LKIIVIDF-GV----KYN-ILRRLKSFGCSITVVP------ATSPYQDILSY------------QP---DGILLSNGPGD 245 (382)
T ss_pred CEEEEEEC-Cc----HHH-HHHHHHHCCCeEEEEc------CCCCHHHHhcc------------CC---CEEEEcCCCCC
Confidence 45677899 53 232 7899999999988772 45665655432 22 35888988766
Q ss_pred CC
Q 021582 294 PV 295 (310)
Q Consensus 294 pg 295 (310)
|.
T Consensus 246 p~ 247 (382)
T CHL00197 246 PS 247 (382)
T ss_pred hh
Confidence 64
No 85
>PRK12367 short chain dehydrogenase; Provisional
Probab=24.99 E-value=3.1e+02 Score=24.80 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=27.5
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 021582 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (310)
Q Consensus 212 ~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~ 251 (310)
.+++++.+-..|- +.- +++.|.+.|.+|+++.|..
T Consensus 14 ~k~~lITGas~gI----G~a-la~~l~~~G~~Vi~~~r~~ 48 (245)
T PRK12367 14 GKRIGITGASGAL----GKA-LTKAFRAKGAKVIGLTHSK 48 (245)
T ss_pred CCEEEEEcCCcHH----HHH-HHHHHHHCCCEEEEEECCc
Confidence 3677766666554 886 9999999999999988764
No 86
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=24.88 E-value=1.1e+02 Score=29.38 Aligned_cols=35 Identities=40% Similarity=0.454 Sum_probs=31.0
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 021582 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (310)
Q Consensus 212 ~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~ 251 (310)
.+.+++-+=|+|- |.- .++.|.++|..|++++|..
T Consensus 35 ~~~~vVTGansGI----G~e-ta~~La~~Ga~Vv~~~R~~ 69 (314)
T KOG1208|consen 35 GKVALVTGATSGI----GFE-TARELALRGAHVVLACRNE 69 (314)
T ss_pred CcEEEEECCCCch----HHH-HHHHHHhCCCEEEEEeCCH
Confidence 4678888899997 886 9999999999999999986
No 87
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=24.84 E-value=1.1e+02 Score=26.58 Aligned_cols=33 Identities=24% Similarity=0.333 Sum_probs=25.6
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecC
Q 021582 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAAND 250 (310)
Q Consensus 213 k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~ 250 (310)
+++++.+- +|. ++.- +++.|.+.|++|++.++.
T Consensus 7 ~~vlItGa-sg~---iG~~-l~~~l~~~g~~v~~~~~~ 39 (249)
T PRK12825 7 RVALVTGA-ARG---LGRA-IALRLARAGADVVVHYRS 39 (249)
T ss_pred CEEEEeCC-Cch---HHHH-HHHHHHHCCCeEEEEeCC
Confidence 67777765 443 4886 999999999999886664
No 88
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=24.69 E-value=2e+02 Score=28.67 Aligned_cols=49 Identities=18% Similarity=0.193 Sum_probs=29.5
Q ss_pred CHHHHHHHhcccCCCeEEEEecCCCcch-hcchHHHHHHHHhCCCEEEEEec
Q 021582 199 DLETFKVKWSKKAWKKAVIFVDNSGADI-ILGILPFARELLRRGTQVILAAN 249 (310)
Q Consensus 199 d~~~~~~~L~~~~~k~ilyl~DNaGedi-VfD~Lpli~~L~~~g~~V~l~vk 249 (310)
....+.+.+...+.+++++++|..-... +++. +++.|...|.++.+...
T Consensus 16 ~l~~l~~~~~~~g~~r~liVTd~~~~~~g~~~~--v~~~L~~~~i~~~if~~ 65 (377)
T COG1454 16 SLKELGEEVKRLGAKRALIVTDRGLAKLGLLDK--VLDSLDAAGIEYEVFDE 65 (377)
T ss_pred hHHHHHHHHHhcCCCceEEEECCccccchhHHH--HHHHHHhcCCeEEEecC
Confidence 3444444444334699999999963312 3454 57788888865544433
No 89
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=24.67 E-value=6.6e+02 Score=27.81 Aligned_cols=50 Identities=14% Similarity=0.146 Sum_probs=26.7
Q ss_pred CCCCCCChh-HHHHHHHHHHHHHHcCCccchHH-HHHHHHHHHHHHHHHHHHH
Q 021582 91 PETHGGPPD-CILLCRLREQVLRELGFRDIFKK-VKDEENAKAISLFGDVVRL 141 (310)
Q Consensus 91 p~~~~~~~~-~r~~~~l~~~~~~~~g~~DPy~~-~K~~~N~~Al~~~~~l~~~ 141 (310)
|+..|.--+ ||++.|..+.. +.+|+..||.. .=..--+..-..+|++.+.
T Consensus 294 PsN~grgYvlRrilRRa~r~~-~~lg~~~~fl~~lv~~~~~~m~~~ypel~~~ 345 (851)
T TIGR00344 294 PSNEGRGYVLRRLIRRALRHG-KKLGLKEAFLYKLVPTLIEVLGDYYPELKEK 345 (851)
T ss_pred cCCCCCchhHHHHHHHHHHHH-HHhCCCchHHHHHHHHHHHHHhhhChHhHHh
Confidence 444444333 67777777766 46899988532 2222222333334555443
No 90
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=24.51 E-value=1.1e+02 Score=26.59 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=25.6
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCC
Q 021582 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLP 252 (310)
Q Consensus 213 k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~P 252 (310)
+++++.+ -+|. ++.- +++.|++.|.+|++..+..+
T Consensus 6 ~~vlItG-~sg~---iG~~-l~~~l~~~G~~v~~~~~~~~ 40 (248)
T PRK05557 6 KVALVTG-ASRG---IGRA-IAERLAAQGANVVINYASSE 40 (248)
T ss_pred CEEEEEC-CCch---HHHH-HHHHHHHCCCEEEEEeCCch
Confidence 5665555 4554 4886 99999999999988776543
No 91
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=24.42 E-value=1.1e+02 Score=26.60 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=23.2
Q ss_pred eEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEec
Q 021582 214 KAVIFVDNSGADIILGILPFARELLRRGTQVILAAN 249 (310)
Q Consensus 214 ~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk 249 (310)
++++.+- +|. ++.- +++.|.+.|++|++..+
T Consensus 2 ~~lItG~-sg~---iG~~-la~~l~~~G~~v~~~~r 32 (242)
T TIGR01829 2 IALVTGG-MGG---IGTA-ICQRLAKDGYRVAANCG 32 (242)
T ss_pred EEEEECC-CCh---HHHH-HHHHHHHCCCEEEEEeC
Confidence 3444444 554 3886 99999999999998887
No 92
>PRK12743 oxidoreductase; Provisional
Probab=24.42 E-value=1.1e+02 Score=27.45 Aligned_cols=33 Identities=21% Similarity=0.322 Sum_probs=25.4
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecC
Q 021582 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAAND 250 (310)
Q Consensus 213 k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~ 250 (310)
|++++.+-+.| ++.- +++.|++.|++|+++.+.
T Consensus 3 k~vlItGas~g----iG~~-~a~~l~~~G~~V~~~~~~ 35 (256)
T PRK12743 3 QVAIVTASDSG----IGKA-CALLLAQQGFDIGITWHS 35 (256)
T ss_pred CEEEEECCCch----HHHH-HHHHHHHCCCEEEEEeCC
Confidence 56766665544 3886 999999999999988654
No 93
>PRK07060 short chain dehydrogenase; Provisional
Probab=24.42 E-value=1.1e+02 Score=26.68 Aligned_cols=35 Identities=31% Similarity=0.374 Sum_probs=27.5
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 021582 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (310)
Q Consensus 212 ~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~ 251 (310)
.+++++.+-+.|- +.- +++.|.+.|++|+++.|+.
T Consensus 9 ~~~~lItGa~g~i----G~~-~a~~l~~~g~~V~~~~r~~ 43 (245)
T PRK07060 9 GKSVLVTGASSGI----GRA-CAVALAQRGARVVAAARNA 43 (245)
T ss_pred CCEEEEeCCcchH----HHH-HHHHHHHCCCEEEEEeCCH
Confidence 3677776665554 886 9999999999999998864
No 94
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=24.39 E-value=1.1e+02 Score=27.10 Aligned_cols=35 Identities=26% Similarity=0.230 Sum_probs=27.3
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 021582 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (310)
Q Consensus 212 ~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~ 251 (310)
.|++++.+=+.|- +.- +++.|.+.|.+|+++.|..
T Consensus 5 ~k~vlItGas~gI----G~~-ia~~l~~~G~~vi~~~r~~ 39 (248)
T TIGR01832 5 GKVALVTGANTGL----GQG-IAVGLAEAGADIVGAGRSE 39 (248)
T ss_pred CCEEEEECCCchH----HHH-HHHHHHHCCCEEEEEcCch
Confidence 3677776665443 886 9999999999999998854
No 95
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=24.37 E-value=1e+02 Score=28.60 Aligned_cols=37 Identities=27% Similarity=0.503 Sum_probs=26.3
Q ss_pred eEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 021582 214 KAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (310)
Q Consensus 214 ~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~ 251 (310)
+|++++=-.|.++-+.. .|+++|.++|++|+++...+
T Consensus 2 ~i~~~~g~~~g~~~~~~-~La~~L~~~g~eV~vv~~~~ 38 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPAL-AVAEELIKRGVEVLWLGTKR 38 (348)
T ss_pred eEEEEeCccHHHHhHHH-HHHHHHHhCCCEEEEEeCCC
Confidence 56676655565355334 49999999999999887533
No 96
>PF09840 DUF2067: Uncharacterized protein conserved in archaea (DUF2067); InterPro: IPR019202 This family of archaeal proteins, have no known function.
Probab=24.37 E-value=1.4e+02 Score=26.90 Aligned_cols=70 Identities=11% Similarity=0.007 Sum_probs=48.5
Q ss_pred HHHHHHhCCCEEEEEecCCCccccCChHHHHHHHHHhhhhhhhccCc--cccceEEecCCCCCCCCChhhhcHH
Q 021582 233 FARELLRRGTQVILAANDLPSINDVTYPELIEIMSKLKDEKGQLMGV--DTSKLLIANSGNDLPVRNGSAAFYF 304 (310)
Q Consensus 233 li~~L~~~g~~V~l~vk~~P~lNDaT~~d~~~~l~~~a~~~~~l~gl--~~~~~~Vi~sG~~~pg~~l~~~s~~ 304 (310)
+++.|..+|.++-+ ++.-+..|+..+++.++++++......+++. ....=.||-.-+-.-|++...+=++
T Consensus 91 L~~~L~~~G~~ae~--~~~~i~T~a~~eev~~l~~~Lse~~~e~~~~~~~~~aK~vi~~~s~~~g~~p~evie~ 162 (190)
T PF09840_consen 91 LVDALKLLGYKAEY--REDVIKTDAPLEEVVELAERLSEIYKELRFQPLGTKAKRVIAAVSYATGLDPEEVIEE 162 (190)
T ss_pred HHHHHHhCCCeeEE--eCCeEEecCCHHHHHHHHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 68888889988866 7888899999999999999999988888864 2211023333333345555554433
No 97
>PRK06196 oxidoreductase; Provisional
Probab=24.35 E-value=1.1e+02 Score=28.63 Aligned_cols=35 Identities=31% Similarity=0.383 Sum_probs=28.0
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 021582 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (310)
Q Consensus 212 ~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~ 251 (310)
.+++++.+-+.|- +.- +++.|.+.|++|+++.|..
T Consensus 26 ~k~vlITGasggI----G~~-~a~~L~~~G~~Vv~~~R~~ 60 (315)
T PRK06196 26 GKTAIVTGGYSGL----GLE-TTRALAQAGAHVIVPARRP 60 (315)
T ss_pred CCEEEEeCCCchH----HHH-HHHHHHHCCCEEEEEeCCH
Confidence 3677777765553 886 9999999999999998864
No 98
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=24.27 E-value=1.5e+02 Score=30.83 Aligned_cols=54 Identities=24% Similarity=0.370 Sum_probs=42.7
Q ss_pred CCCCCCCCHHHHHHHhcccCCCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEe
Q 021582 192 PRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAA 248 (310)
Q Consensus 192 ~~~~~~Dd~~~~~~~L~~~~~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~v 248 (310)
+.|-.+..++...+++++. .+.|.|++--+-+ -+=-- ||++.|++.|.+|+|.+
T Consensus 513 ~~~~~~TsLdqYveRMK~k-Q~~IyymaGssr~-e~E~s-PfvERLlkKGyEVi~lt 566 (785)
T KOG0020|consen 513 NHPTKITSLDQYVERMKEK-QDKIYYMAGSSRK-EVEKS-PFVERLLKKGYEVIYLT 566 (785)
T ss_pred CCCCCcccHHHHHHHHhhc-cccEEEecCCcHh-hhccC-cHHHHHHhcCceEEEEc
Confidence 3466777889999999753 5789999888877 44344 99999999999999864
No 99
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=24.25 E-value=88 Score=31.05 Aligned_cols=29 Identities=24% Similarity=0.369 Sum_probs=24.6
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEE
Q 021582 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILA 247 (310)
Q Consensus 213 k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~ 247 (310)
|+||++ |+|+ + .. ++++.++++|++|+.+
T Consensus 3 k~iLi~--g~g~-~--a~-~i~~aa~~~G~~vv~~ 31 (451)
T PRK08591 3 DKILIA--NRGE-I--AL-RIIRACKELGIKTVAV 31 (451)
T ss_pred ceEEEE--CCCH-H--HH-HHHHHHHHcCCeEEEE
Confidence 688888 8998 5 45 6999999999998876
No 100
>PRK07890 short chain dehydrogenase; Provisional
Probab=24.21 E-value=1.3e+02 Score=26.65 Aligned_cols=34 Identities=32% Similarity=0.325 Sum_probs=25.6
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 021582 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (310)
Q Consensus 213 k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~ 251 (310)
+++++.+ -+|. ++.- +++.|.++|.+|+++.|+.
T Consensus 6 k~vlItG-a~~~---IG~~-la~~l~~~G~~V~~~~r~~ 39 (258)
T PRK07890 6 KVVVVSG-VGPG---LGRT-LAVRAARAGADVVLAARTA 39 (258)
T ss_pred CEEEEEC-CCCc---HHHH-HHHHHHHcCCEEEEEeCCH
Confidence 5555554 4554 4886 9999999999999998754
No 101
>PRK08264 short chain dehydrogenase; Validated
Probab=24.03 E-value=3e+02 Score=23.95 Aligned_cols=35 Identities=31% Similarity=0.433 Sum_probs=26.3
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCC-EEEEEecCCC
Q 021582 213 KKAVIFVDNSGADIILGILPFARELLRRGT-QVILAANDLP 252 (310)
Q Consensus 213 k~ilyl~DNaGediVfD~Lpli~~L~~~g~-~V~l~vk~~P 252 (310)
+++++.+ .+|. ++.- +++.|+++|. +|+++.|+..
T Consensus 7 ~~vlItG-gsg~---iG~~-la~~l~~~G~~~V~~~~r~~~ 42 (238)
T PRK08264 7 KVVLVTG-ANRG---IGRA-FVEQLLARGAAKVYAAARDPE 42 (238)
T ss_pred CEEEEEC-CCch---HHHH-HHHHHHHCCcccEEEEecChh
Confidence 4555554 5555 4886 9999999998 9999998654
No 102
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=23.81 E-value=73 Score=25.80 Aligned_cols=42 Identities=24% Similarity=0.384 Sum_probs=24.7
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCCccccCChHHHHH
Q 021582 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIE 264 (310)
Q Consensus 212 ~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~P~lNDaT~~d~~~ 264 (310)
...+++++-. . |..|+++.|+++|.+|+++.- .+-+.+++..
T Consensus 96 ~d~ivLvSgD--~----Df~~~v~~l~~~g~~V~v~~~-----~~~~s~~L~~ 137 (146)
T PF01936_consen 96 PDTIVLVSGD--S----DFAPLVRKLRERGKRVIVVGA-----EDSASEALRS 137 (146)
T ss_dssp -SEEEEE-----G----GGHHHHHHHHHH--EEEEEE------GGGS-HHHHH
T ss_pred CCEEEEEECc--H----HHHHHHHHHHHcCCEEEEEEe-----CCCCCHHHHH
Confidence 4667776644 2 456999999999999999872 4455555543
No 103
>PRK12939 short chain dehydrogenase; Provisional
Probab=23.72 E-value=1.2e+02 Score=26.49 Aligned_cols=36 Identities=25% Similarity=0.295 Sum_probs=26.2
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCC
Q 021582 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLP 252 (310)
Q Consensus 212 ~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~P 252 (310)
.+++++.+- +|. ++.- +++.|.++|++|++..|+..
T Consensus 7 ~~~vlItGa-~g~---iG~~-la~~l~~~G~~v~~~~r~~~ 42 (250)
T PRK12939 7 GKRALVTGA-ARG---LGAA-FAEALAEAGATVAFNDGLAA 42 (250)
T ss_pred CCEEEEeCC-CCh---HHHH-HHHHHHHcCCEEEEEeCCHH
Confidence 356665554 444 3885 99999999999999877533
No 104
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=23.60 E-value=1.2e+02 Score=26.83 Aligned_cols=34 Identities=26% Similarity=0.254 Sum_probs=24.8
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 021582 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (310)
Q Consensus 213 k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~ 251 (310)
|++++.+-+.|- +.- +++.|.+.|.+|+++.++.
T Consensus 1 k~~lItG~sg~i----G~~-la~~l~~~G~~v~~~~r~~ 34 (254)
T TIGR02415 1 KVALVTGGAQGI----GKG-IAERLAKDGFAVAVADLNE 34 (254)
T ss_pred CEEEEeCCCchH----HHH-HHHHHHHCCCEEEEEeCCH
Confidence 356666654443 775 8999999999999888763
No 105
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=23.50 E-value=2.3e+02 Score=21.49 Aligned_cols=35 Identities=14% Similarity=0.125 Sum_probs=23.9
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCC
Q 021582 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLP 252 (310)
Q Consensus 212 ~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~P 252 (310)
.+.|+++|...+. -.. .++.|.+.|.+ ++.++|+.
T Consensus 61 ~~~ivv~C~~G~r----s~~-aa~~L~~~G~~-~~~l~GG~ 95 (100)
T cd01523 61 DQEVTVICAKEGS----SQF-VAELLAERGYD-VDYLAGGM 95 (100)
T ss_pred CCeEEEEcCCCCc----HHH-HHHHHHHcCce-eEEeCCcH
Confidence 4677777764333 244 78889999998 66677763
No 106
>PRK06179 short chain dehydrogenase; Provisional
Probab=23.43 E-value=4.7e+02 Score=23.26 Aligned_cols=52 Identities=23% Similarity=0.234 Sum_probs=34.0
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCC----------ccccCChHHHH-HHHHHh
Q 021582 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLP----------SINDVTYPELI-EIMSKL 269 (310)
Q Consensus 213 k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~P----------~lNDaT~~d~~-~~l~~~ 269 (310)
++++ ++--+|. ++.- +++.|.++|.+|+++.|... +.-|++-.+-. .+++.+
T Consensus 5 ~~vl-VtGasg~---iG~~-~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~ 67 (270)
T PRK06179 5 KVAL-VTGASSG---IGRA-TAEKLARAGYRVFGTSRNPARAAPIPGVELLELDVTDDASVQAAVDEV 67 (270)
T ss_pred CEEE-EecCCCH---HHHH-HHHHHHHCCCEEEEEeCChhhccccCCCeeEEeecCCHHHHHHHHHHH
Confidence 4554 4445565 3886 99999999999999998632 24477655443 444433
No 107
>PRK06057 short chain dehydrogenase; Provisional
Probab=23.20 E-value=1.1e+02 Score=27.21 Aligned_cols=36 Identities=33% Similarity=0.411 Sum_probs=27.6
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCC
Q 021582 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLP 252 (310)
Q Consensus 212 ~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~P 252 (310)
.+++++.+-+.| ++.- +++.|.++|++|+++.|..+
T Consensus 7 ~~~vlItGasgg----IG~~-~a~~l~~~G~~v~~~~r~~~ 42 (255)
T PRK06057 7 GRVAVITGGGSG----IGLA-TARRLAAEGATVVVGDIDPE 42 (255)
T ss_pred CCEEEEECCCch----HHHH-HHHHHHHcCCEEEEEeCCHH
Confidence 367776666544 3886 99999999999999987654
No 108
>PRK05693 short chain dehydrogenase; Provisional
Probab=23.15 E-value=1.2e+02 Score=27.51 Aligned_cols=34 Identities=21% Similarity=0.159 Sum_probs=25.5
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 021582 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (310)
Q Consensus 213 k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~ 251 (310)
|++++.+= +|. ++.- +++.|.+.|++|+++.|..
T Consensus 2 k~vlItGa-sgg---iG~~-la~~l~~~G~~V~~~~r~~ 35 (274)
T PRK05693 2 PVVLITGC-SSG---IGRA-LADAFKAAGYEVWATARKA 35 (274)
T ss_pred CEEEEecC-CCh---HHHH-HHHHHHHCCCEEEEEeCCH
Confidence 35555554 444 4887 9999999999999998864
No 109
>PRK08017 oxidoreductase; Provisional
Probab=23.07 E-value=1.2e+02 Score=26.77 Aligned_cols=34 Identities=38% Similarity=0.407 Sum_probs=26.3
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 021582 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (310)
Q Consensus 213 k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~ 251 (310)
+++++.+=+.|- +.- +++.|.+.|.+|+++.|..
T Consensus 3 k~vlVtGasg~I----G~~-la~~l~~~g~~v~~~~r~~ 36 (256)
T PRK08017 3 KSVLITGCSSGI----GLE-AALELKRRGYRVLAACRKP 36 (256)
T ss_pred CEEEEECCCChH----HHH-HHHHHHHCCCEEEEEeCCH
Confidence 466666664443 886 9999999999999988864
No 110
>PRK05866 short chain dehydrogenase; Provisional
Probab=23.06 E-value=1.1e+02 Score=28.32 Aligned_cols=34 Identities=29% Similarity=0.394 Sum_probs=27.1
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 021582 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (310)
Q Consensus 213 k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~ 251 (310)
+++++.+=+.|- +.- +++.|.++|++|+++.|..
T Consensus 41 k~vlItGasggI----G~~-la~~La~~G~~Vi~~~R~~ 74 (293)
T PRK05866 41 KRILLTGASSGI----GEA-AAEQFARRGATVVAVARRE 74 (293)
T ss_pred CEEEEeCCCcHH----HHH-HHHHHHHCCCEEEEEECCH
Confidence 566666655543 997 9999999999999999864
No 111
>PRK09135 pteridine reductase; Provisional
Probab=22.90 E-value=1.2e+02 Score=26.54 Aligned_cols=33 Identities=27% Similarity=0.301 Sum_probs=25.9
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecC
Q 021582 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAAND 250 (310)
Q Consensus 213 k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~ 250 (310)
+++++.+- +|. ++.- +++.|.+.|.+|+++.|.
T Consensus 7 ~~vlItGa-~g~---iG~~-l~~~l~~~g~~v~~~~r~ 39 (249)
T PRK09135 7 KVALITGG-ARR---IGAA-IARTLHAAGYRVAIHYHR 39 (249)
T ss_pred CEEEEeCC-Cch---HHHH-HHHHHHHCCCEEEEEcCC
Confidence 56666664 454 4886 999999999999999876
No 112
>PLN02846 digalactosyldiacylglycerol synthase
Probab=22.82 E-value=1.1e+02 Score=31.20 Aligned_cols=38 Identities=26% Similarity=0.331 Sum_probs=30.8
Q ss_pred CeEEEEecCC-----CcchhcchHHHHHHHHhCC-CEEEEEecCCC
Q 021582 213 KKAVIFVDNS-----GADIILGILPFARELLRRG-TQVILAANDLP 252 (310)
Q Consensus 213 k~ilyl~DNa-----GediVfD~Lpli~~L~~~g-~~V~l~vk~~P 252 (310)
.+|++++|.. |. .+.=.. ++.+|.++| |+|++++=..|
T Consensus 5 mrIaivTdt~lP~vnGv-a~s~~~-~a~~L~~~G~heV~vvaP~~~ 48 (462)
T PLN02846 5 QHIAIFTTASLPWMTGT-AVNPLF-RAAYLAKDGDREVTLVIPWLS 48 (462)
T ss_pred CEEEEEEcCCCCCCCCe-eccHHH-HHHHHHhcCCcEEEEEecCCc
Confidence 6899999975 65 566665 999999999 79999986655
No 113
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=22.82 E-value=1.3e+02 Score=26.49 Aligned_cols=34 Identities=29% Similarity=0.266 Sum_probs=26.4
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 021582 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (310)
Q Consensus 213 k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~ 251 (310)
+++++.+= +|. ++.. +++.|++.|++|+++.|..
T Consensus 8 ~~vlVtG~-sg~---iG~~-l~~~L~~~G~~Vi~~~r~~ 41 (239)
T PRK07666 8 KNALITGA-GRG---IGRA-VAIALAKEGVNVGLLARTE 41 (239)
T ss_pred CEEEEEcC-Cch---HHHH-HHHHHHHCCCEEEEEeCCH
Confidence 56666653 444 5886 9999999999999999864
No 114
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=22.73 E-value=1.2e+02 Score=27.90 Aligned_cols=37 Identities=27% Similarity=0.423 Sum_probs=29.3
Q ss_pred eEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCC
Q 021582 214 KAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLP 252 (310)
Q Consensus 214 ~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~P 252 (310)
||+|.++..|-=.+-=.+++++.| +|++|++++.+..
T Consensus 2 kIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~ 38 (318)
T PF13528_consen 2 KILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPA 38 (318)
T ss_pred EEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCc
Confidence 788999888875555566789999 4899999988855
No 115
>PF02093 Gag_p30: Gag P30 core shell protein; InterPro: IPR003036 P30 is essential for viral assembly []. Cleavage of P70 in vitro can be accompanied by a shift from a concentrically coiled internal strand ("immature") to a collapsed ("mature") form of the virus core [].; GO: 0019068 virion assembly; PDB: 3BP9_U 1U7K_D 2Y4Z_A 1BM4_A.
Probab=22.69 E-value=56 Score=29.94 Aligned_cols=21 Identities=14% Similarity=0.047 Sum_probs=17.8
Q ss_pred hhhHHHHhhhcHHHHHHHhhc
Q 021582 42 EIAWLDLFLNSIPSFKKRAES 62 (310)
Q Consensus 42 ~~~w~~~~~~ci~c~~~qa~~ 62 (310)
.+-|++.+..|+-+=++.|..
T Consensus 101 g~~~L~~yrq~LL~GLr~aa~ 121 (211)
T PF02093_consen 101 GREALRLYRQCLLAGLRGAAR 121 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCC
Confidence 356999999999999999854
No 116
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=22.47 E-value=73 Score=31.90 Aligned_cols=106 Identities=15% Similarity=0.147 Sum_probs=71.3
Q ss_pred HHcCCccchHHHHHHHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHhhhhhhcchhhhhhhccCcccHHHHHhhhc
Q 021582 112 RELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLV 191 (310)
Q Consensus 112 ~~~g~~DPy~~~K~~~N~~Al~~~~~l~~~ld~~~~~~d~l~~alr~alaGN~iD~g~~~~~~~~~~~~~~~~~~~~~~~ 191 (310)
.-.+.+|||.++=++-+..+-.-+|-.+..+|.+-. -=..++++|+..-+|-+ -...+.++.
T Consensus 213 ~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiG-vlh~r~llr~l~e~~~~-----------------~k~d~~~~a 274 (423)
T COG4536 213 IGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIG-VLHVRDLLRLLNEKNEF-----------------TKEDILRAA 274 (423)
T ss_pred eeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhh-hhhHHHHHHHhhccCcc-----------------cHhHHHHHh
Confidence 345778999999999999998888888877765432 23456666666544431 123445566
Q ss_pred CCCCCCCCHHHHHHHhcc--cCCCeEEEEecCCCcchhcchHHHHHHHH
Q 021582 192 PRPWVIDDLETFKVKWSK--KAWKKAVIFVDNSGADIILGILPFARELL 238 (310)
Q Consensus 192 ~~~~~~Dd~~~~~~~L~~--~~~k~ilyl~DNaGediVfD~Lpli~~L~ 238 (310)
.+||.+-+...+...|.+ ...+++-+++|.=|+ +. ++. =.|-++
T Consensus 275 ~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~-i~-GLV-TLEDIl 320 (423)
T COG4536 275 DEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGD-IQ-GLV-TLEDIL 320 (423)
T ss_pred cCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCc-EE-eee-eHHHHH
Confidence 789999887666666542 115789999999997 43 664 444443
No 117
>PRK07775 short chain dehydrogenase; Provisional
Probab=22.27 E-value=1.3e+02 Score=27.32 Aligned_cols=33 Identities=27% Similarity=0.298 Sum_probs=25.2
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecC
Q 021582 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAAND 250 (310)
Q Consensus 213 k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~ 250 (310)
+++++.+-+ |. ++.- +++.|.+.|.+|+++.|.
T Consensus 11 ~~vlVtGa~-g~---iG~~-la~~L~~~G~~V~~~~r~ 43 (274)
T PRK07775 11 RPALVAGAS-SG---IGAA-TAIELAAAGFPVALGARR 43 (274)
T ss_pred CEEEEECCC-ch---HHHH-HHHHHHHCCCEEEEEeCC
Confidence 456666544 44 3886 999999999999988874
No 118
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.15 E-value=2.1e+02 Score=27.39 Aligned_cols=68 Identities=18% Similarity=0.251 Sum_probs=46.6
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCCccccCChHHHHHHHHH------hhhhhhhccC--ccccc
Q 021582 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIMSK------LKDEKGQLMG--VDTSK 283 (310)
Q Consensus 212 ~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~P~lNDaT~~d~~~~l~~------~a~~~~~l~g--l~~~~ 283 (310)
++++++++ .+ .+.++ |++..|++.|..||++-.. ..++.+.+++ ++++..++.+ ++++
T Consensus 158 Gk~vvViG--rS--~iVG~-Pla~lL~~~~atVt~chs~--------t~~l~~~~~~ADIvI~AvG~p~~i~~~~ik~g- 223 (284)
T PRK14190 158 GKHVVVVG--RS--NIVGK-PVGQLLLNENATVTYCHSK--------TKNLAELTKQADILIVAVGKPKLITADMVKEG- 223 (284)
T ss_pred CCEEEEEC--CC--CccHH-HHHHHHHHCCCEEEEEeCC--------chhHHHHHHhCCEEEEecCCCCcCCHHHcCCC-
Confidence 57888874 33 34599 9999999999999987432 2345544444 4555566655 6665
Q ss_pred eEEecCCCCC
Q 021582 284 LLIANSGNDL 293 (310)
Q Consensus 284 ~~Vi~sG~~~ 293 (310)
..||+-|...
T Consensus 224 avVIDvGi~~ 233 (284)
T PRK14190 224 AVVIDVGVNR 233 (284)
T ss_pred CEEEEeeccc
Confidence 5899999875
No 119
>PRK06841 short chain dehydrogenase; Provisional
Probab=22.10 E-value=1.4e+02 Score=26.36 Aligned_cols=34 Identities=29% Similarity=0.346 Sum_probs=25.8
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 021582 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (310)
Q Consensus 213 k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~ 251 (310)
+++++.+-+.| ++.- +++.|.++|.+|+++.|+.
T Consensus 16 k~vlItGas~~----IG~~-la~~l~~~G~~Vi~~~r~~ 49 (255)
T PRK06841 16 KVAVVTGGASG----IGHA-IAELFAAKGARVALLDRSE 49 (255)
T ss_pred CEEEEECCCCh----HHHH-HHHHHHHCCCEEEEEeCCH
Confidence 56665554444 3786 9999999999999998864
No 120
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=22.10 E-value=1.3e+02 Score=26.42 Aligned_cols=34 Identities=24% Similarity=0.362 Sum_probs=25.5
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 021582 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (310)
Q Consensus 213 k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~ 251 (310)
+++++.+- +|. ++.- +++.|+++|.+|+++.|..
T Consensus 5 ~~vlItG~-sg~---iG~~-la~~l~~~g~~v~~~~r~~ 38 (258)
T PRK12429 5 KVALVTGA-ASG---IGLE-IALALAKEGAKVVIADLND 38 (258)
T ss_pred CEEEEECC-Cch---HHHH-HHHHHHHCCCeEEEEeCCH
Confidence 55665554 454 3886 9999999999999988753
No 121
>PRK06197 short chain dehydrogenase; Provisional
Probab=22.07 E-value=1.2e+02 Score=27.98 Aligned_cols=34 Identities=32% Similarity=0.416 Sum_probs=27.0
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecC
Q 021582 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAAND 250 (310)
Q Consensus 212 ~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~ 250 (310)
.+++++.+=+.|- +.- +++.|.++|.+|+++.|.
T Consensus 16 ~k~vlItGas~gI----G~~-~a~~l~~~G~~vi~~~r~ 49 (306)
T PRK06197 16 GRVAVVTGANTGL----GYE-TAAALAAKGAHVVLAVRN 49 (306)
T ss_pred CCEEEEcCCCCcH----HHH-HHHHHHHCCCEEEEEeCC
Confidence 3677766665554 886 999999999999999875
No 122
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=22.03 E-value=1.3e+02 Score=26.40 Aligned_cols=35 Identities=20% Similarity=0.239 Sum_probs=26.7
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 021582 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (310)
Q Consensus 212 ~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~ 251 (310)
.+++++.+-+.| ++.- +++.|++.|.+|+++.+..
T Consensus 3 ~~~ilItGas~~----iG~~-la~~l~~~g~~v~~~~r~~ 37 (250)
T TIGR03206 3 DKTAIVTGGGGG----IGGA-TCRRFAEEGAKVAVFDLNR 37 (250)
T ss_pred CCEEEEeCCCCh----HHHH-HHHHHHHCCCEEEEecCCH
Confidence 366766665444 3886 9999999999999987764
No 123
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=21.99 E-value=96 Score=24.95 Aligned_cols=29 Identities=28% Similarity=0.472 Sum_probs=19.9
Q ss_pred CcchhcchHHHHHHHHhCCCEEEEEecCCCc
Q 021582 223 GADIILGILPFARELLRRGTQVILAANDLPS 253 (310)
Q Consensus 223 GediVfD~Lpli~~L~~~g~~V~l~vk~~P~ 253 (310)
|.|.+..- +++.|.++|++|++++.+..-
T Consensus 13 G~e~~~~~--l~~~l~~~G~~v~v~~~~~~~ 41 (177)
T PF13439_consen 13 GAERVVLN--LARALAKRGHEVTVVSPGVKD 41 (177)
T ss_dssp HHHHHHHH--HHHHHHHTT-EEEEEESS-TT
T ss_pred hHHHHHHH--HHHHHHHCCCEEEEEEcCCCc
Confidence 34445444 689999999999999776554
No 124
>PRK09291 short chain dehydrogenase; Provisional
Probab=21.91 E-value=2.8e+02 Score=24.41 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=25.6
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 021582 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (310)
Q Consensus 213 k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~ 251 (310)
+++ +++--+|. ++.- +++.|++.|.+|+..+|..
T Consensus 3 ~~v-lVtGasg~---iG~~-ia~~l~~~G~~v~~~~r~~ 36 (257)
T PRK09291 3 KTI-LITGAGSG---FGRE-VALRLARKGHNVIAGVQIA 36 (257)
T ss_pred CEE-EEeCCCCH---HHHH-HHHHHHHCCCEEEEEeCCH
Confidence 344 45555665 4886 9999999999999998854
No 125
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.85 E-value=2.2e+02 Score=27.45 Aligned_cols=68 Identities=16% Similarity=0.210 Sum_probs=43.1
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCCccccCChHHHHHHHHH------hhhhhhhccC--ccccc
Q 021582 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIMSK------LKDEKGQLMG--VDTSK 283 (310)
Q Consensus 212 ~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~P~lNDaT~~d~~~~l~~------~a~~~~~l~g--l~~~~ 283 (310)
+|+|.+++- |. +.|+ |++..|++.|..|+++=+..+ ++.+..+. ++.+.+.+.. ++.+
T Consensus 159 Gk~V~vIG~--s~--ivG~-PmA~~L~~~gatVtv~~~~t~--------~l~e~~~~ADIVIsavg~~~~v~~~~ik~G- 224 (301)
T PRK14194 159 GKHAVVIGR--SN--IVGK-PMAALLLQAHCSVTVVHSRST--------DAKALCRQADIVVAAVGRPRLIDADWLKPG- 224 (301)
T ss_pred CCEEEEECC--CC--ccHH-HHHHHHHHCCCEEEEECCCCC--------CHHHHHhcCCEEEEecCChhcccHhhccCC-
Confidence 588888853 33 3477 899999999999999855443 22222222 3334444443 5554
Q ss_pred eEEecCCCCC
Q 021582 284 LLIANSGNDL 293 (310)
Q Consensus 284 ~~Vi~sG~~~ 293 (310)
..||+-|...
T Consensus 225 aiVIDvgin~ 234 (301)
T PRK14194 225 AVVIDVGINR 234 (301)
T ss_pred cEEEEecccc
Confidence 5888888654
No 126
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=21.74 E-value=2e+02 Score=28.82 Aligned_cols=44 Identities=25% Similarity=0.375 Sum_probs=31.6
Q ss_pred CHHHHHHHhcccCCCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 021582 199 DLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (310)
Q Consensus 199 d~~~~~~~L~~~~~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~ 251 (310)
|+.+|++-+.+ ++|++++ .| .-++ .+++.|++.|++|++.=+..
T Consensus 4 ~~~~~~~~~~~---~~i~v~G--~G---~sG~-a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 4 DFNEFKKFIKN---KKVAVVG--IG---VSNI-PLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred hHHHHhhhhcC---CeEEEEc--cc---HHHH-HHHHHHHHCCCEEEEECCCC
Confidence 66777777754 6777765 22 2356 59999999999999876543
No 127
>PRK07102 short chain dehydrogenase; Provisional
Probab=21.74 E-value=1.2e+02 Score=26.72 Aligned_cols=35 Identities=31% Similarity=0.387 Sum_probs=25.4
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCC
Q 021582 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLP 252 (310)
Q Consensus 213 k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~P 252 (310)
+++++.+=+.| ++.- +++.|.+.|++|+++.|..+
T Consensus 2 ~~vlItGas~g----iG~~-~a~~l~~~G~~Vi~~~r~~~ 36 (243)
T PRK07102 2 KKILIIGATSD----IARA-CARRYAAAGARLYLAARDVE 36 (243)
T ss_pred cEEEEEcCCcH----HHHH-HHHHHHhcCCEEEEEeCCHH
Confidence 45665554433 3775 89999999999999988753
No 128
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=21.74 E-value=2.8e+02 Score=26.20 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=28.2
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 021582 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (310)
Q Consensus 212 ~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~ 251 (310)
.+++++|+ +|. .++. ++..|+++|.+|+++-|..
T Consensus 152 g~kvlViG--~G~---iG~~-~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLG--FGR---TGMT-LARTLKALGANVTVGARKS 185 (296)
T ss_pred CCEEEEEC--CcH---HHHH-HHHHHHHCCCEEEEEECCH
Confidence 57999998 576 4775 9999999999999987773
No 129
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=21.68 E-value=2.8e+02 Score=24.27 Aligned_cols=55 Identities=16% Similarity=0.340 Sum_probs=35.8
Q ss_pred EEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCCccccCChHHHHHHHHHhhhhhhhccCccccceEEecCCCCCC
Q 021582 216 VIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIMSKLKDEKGQLMGVDTSKLLIANSGNDLP 294 (310)
Q Consensus 216 lyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~P~lNDaT~~d~~~~l~~~a~~~~~l~gl~~~~~~Vi~sG~~~p 294 (310)
+++.||=+- .. -- +++.|.++|.+|+++-.. +.+.+++... .. ...|++.|-..|
T Consensus 2 il~idn~Ds-ft--~n-l~~~l~~~g~~v~v~~~~-----~~~~~~~~~~------------~~---d~iils~GPg~p 56 (187)
T PRK08007 2 ILLIDNYDS-FT--WN-LYQYFCELGADVLVKRND-----ALTLADIDAL------------KP---QKIVISPGPCTP 56 (187)
T ss_pred EEEEECCCc-cH--HH-HHHHHHHCCCcEEEEeCC-----CCCHHHHHhc------------CC---CEEEEcCCCCCh
Confidence 577888887 43 33 678898899988875332 2455554432 22 247888887776
No 130
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=21.65 E-value=2.3e+02 Score=28.05 Aligned_cols=52 Identities=17% Similarity=0.181 Sum_probs=36.0
Q ss_pred CCHHHHHHHhcccCCCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCCccc
Q 021582 198 DDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSIN 255 (310)
Q Consensus 198 Dd~~~~~~~L~~~~~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~P~lN 255 (310)
++...+.+.+.....+++++++ +|. + ++= ++..|.+.|.+|+++.++..++.
T Consensus 134 ~~~~~l~~~l~~~~~~~vvViG--gG~-i--g~E-~A~~l~~~g~~Vtli~~~~~l~~ 185 (438)
T PRK13512 134 EDTDAIDQFIKANQVDKALVVG--AGY-I--SLE-VLENLYERGLHPTLIHRSDKINK 185 (438)
T ss_pred HHHHHHHHHHhhcCCCEEEEEC--CCH-H--HHH-HHHHHHhCCCcEEEEecccccch
Confidence 3455555555443357999997 454 3 453 77889999999999998876543
No 131
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=21.64 E-value=4.4e+02 Score=21.99 Aligned_cols=61 Identities=16% Similarity=0.213 Sum_probs=36.0
Q ss_pred HHHHHHhCCC-EEEEEecCCCccccCChHHHHHHHHHhhhhhhhccCccccceEEecCCCCCCCCChhhhcHHHHhhcC
Q 021582 233 FARELLRRGT-QVILAANDLPSINDVTYPELIEIMSKLKDEKGQLMGVDTSKLLIANSGNDLPVRNGSAAFYFLKSLHQ 310 (310)
Q Consensus 233 li~~L~~~g~-~V~l~vk~~P~lNDaT~~d~~~~l~~~a~~~~~l~gl~~~~~~Vi~sG~~~pg~~l~~~s~~~~~~~~ 310 (310)
+++.|.+.|. .+.+++=|.+.+-+-+.++....+.. .|++ .|. .||++++.+=.+++++|+
T Consensus 74 ~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~--------~G~~----~vf-----~~~~~~~~i~~~l~~~~~ 135 (137)
T PRK02261 74 LREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKE--------MGFD----RVF-----PPGTDPEEAIDDLKKDLN 135 (137)
T ss_pred HHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHH--------cCCC----EEE-----CcCCCHHHHHHHHHHHhc
Confidence 6677777754 56666666666655555543322100 0433 333 456788888888888774
No 132
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=21.61 E-value=1.6e+02 Score=26.73 Aligned_cols=60 Identities=18% Similarity=0.315 Sum_probs=36.4
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHH--hCCCEEEEEecCCCc------------cccCChHHHHHHHHHhhhhhh
Q 021582 213 KKAVIFVDNSGADIILGILPFARELL--RRGTQVILAANDLPS------------INDVTYPELIEIMSKLKDEKG 274 (310)
Q Consensus 213 k~ilyl~DNaGediVfD~Lpli~~L~--~~g~~V~l~vk~~P~------------lNDaT~~d~~~~l~~~a~~~~ 274 (310)
++.|++.||.-....++.+ ...+. ..|.+|++..|...+ +.-.+.+|+.+++...+....
T Consensus 101 ~~~LlVlDdv~~~~~~~~l--~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~ 174 (287)
T PF00931_consen 101 KRCLLVLDDVWDEEDLEEL--REPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKE 174 (287)
T ss_dssp TSEEEEEEEE-SHHHH---------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS
T ss_pred ccceeeeeeeccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5899999998875545443 23332 247899999988643 556688889988888766554
No 133
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=21.57 E-value=1.5e+02 Score=26.48 Aligned_cols=33 Identities=24% Similarity=0.444 Sum_probs=25.0
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecC
Q 021582 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAAND 250 (310)
Q Consensus 213 k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~ 250 (310)
|++++. --+|. ++.- +++.|.+.|++|+++.++
T Consensus 16 k~vlIt-Gas~g---IG~~-ia~~l~~~G~~v~~~~~~ 48 (258)
T PRK06935 16 KVAIVT-GGNTG---LGQG-YAVALAKAGADIIITTHG 48 (258)
T ss_pred CEEEEe-CCCch---HHHH-HHHHHHHCCCEEEEEeCC
Confidence 555554 44554 4886 999999999999999876
No 134
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=21.55 E-value=2e+02 Score=24.83 Aligned_cols=30 Identities=23% Similarity=0.354 Sum_probs=22.5
Q ss_pred EecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 021582 218 FVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (310)
Q Consensus 218 l~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~ 251 (310)
|+--+|. ++.. +++.|.+.|++|+++.|..
T Consensus 3 ItG~~g~---iG~~-la~~l~~~G~~v~~~~r~~ 32 (239)
T TIGR01830 3 VTGASRG---IGRA-IALKLAKEGAKVIITYRSS 32 (239)
T ss_pred EECCCcH---HHHH-HHHHHHHCCCEEEEEeCCc
Confidence 4444555 4775 8999999999998888764
No 135
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=21.48 E-value=2.1e+02 Score=23.25 Aligned_cols=35 Identities=26% Similarity=0.195 Sum_probs=23.4
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEec
Q 021582 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAAN 249 (310)
Q Consensus 213 k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk 249 (310)
|+|++.+==|+. .+. ...+++.|++.|++|.+++-
T Consensus 1 k~i~l~vtGs~~-~~~-~~~~l~~L~~~g~~v~vv~S 35 (129)
T PF02441_consen 1 KRILLGVTGSIA-AYK-APDLLRRLKRAGWEVRVVLS 35 (129)
T ss_dssp -EEEEEE-SSGG-GGG-HHHHHHHHHTTTSEEEEEES
T ss_pred CEEEEEEECHHH-HHH-HHHHHHHHhhCCCEEEEEEC
Confidence 355555544554 554 55699999999999987763
No 136
>PRK05650 short chain dehydrogenase; Provisional
Probab=21.44 E-value=1.2e+02 Score=27.30 Aligned_cols=33 Identities=27% Similarity=0.270 Sum_probs=24.6
Q ss_pred eEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 021582 214 KAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (310)
Q Consensus 214 ~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~ 251 (310)
++++.+-+.|- +.- +++.|.+.|.+|+++.+..
T Consensus 2 ~vlVtGasggI----G~~-la~~l~~~g~~V~~~~r~~ 34 (270)
T PRK05650 2 RVMITGAASGL----GRA-IALRWAREGWRLALADVNE 34 (270)
T ss_pred EEEEecCCChH----HHH-HHHHHHHCCCEEEEEeCCH
Confidence 45555554443 886 9999999999999988754
No 137
>PRK09072 short chain dehydrogenase; Provisional
Probab=21.31 E-value=1.5e+02 Score=26.55 Aligned_cols=34 Identities=24% Similarity=0.509 Sum_probs=25.3
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 021582 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (310)
Q Consensus 213 k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~ 251 (310)
+++ +++--+|. ++.- +++.|.++|.+|+++.|..
T Consensus 6 ~~v-lItG~s~~---iG~~-ia~~l~~~G~~V~~~~r~~ 39 (263)
T PRK09072 6 KRV-LLTGASGG---IGQA-LAEALAAAGARLLLVGRNA 39 (263)
T ss_pred CEE-EEECCCch---HHHH-HHHHHHHCCCEEEEEECCH
Confidence 444 44445554 4786 9999999999999998764
No 138
>PRK07478 short chain dehydrogenase; Provisional
Probab=21.25 E-value=1.3e+02 Score=26.68 Aligned_cols=34 Identities=32% Similarity=0.406 Sum_probs=26.6
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 021582 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (310)
Q Consensus 213 k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~ 251 (310)
+++++.+-+.|- +.- +++.|.+.|.+|+++.|..
T Consensus 7 k~~lItGas~gi----G~~-ia~~l~~~G~~v~~~~r~~ 40 (254)
T PRK07478 7 KVAIITGASSGI----GRA-AAKLFAREGAKVVVGARRQ 40 (254)
T ss_pred CEEEEeCCCChH----HHH-HHHHHHHCCCEEEEEeCCH
Confidence 566666655554 886 9999999999999998864
No 139
>PRK12828 short chain dehydrogenase; Provisional
Probab=21.20 E-value=1.6e+02 Score=25.47 Aligned_cols=33 Identities=33% Similarity=0.356 Sum_probs=25.4
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecC
Q 021582 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAAND 250 (310)
Q Consensus 213 k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~ 250 (310)
+++++ +.-+|. ++.. +++.|++.|++|+++.|.
T Consensus 8 k~vlI-tGatg~---iG~~-la~~l~~~G~~v~~~~r~ 40 (239)
T PRK12828 8 KVVAI-TGGFGG---LGRA-TAAWLAARGARVALIGRG 40 (239)
T ss_pred CEEEE-ECCCCc---HhHH-HHHHHHHCCCeEEEEeCC
Confidence 55555 556665 3886 999999999999999873
No 140
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=21.08 E-value=1.3e+02 Score=28.39 Aligned_cols=36 Identities=17% Similarity=0.093 Sum_probs=26.8
Q ss_pred eEEEEecCCC-cchhcchHHHHHHHHhCCCEEEEEecCC
Q 021582 214 KAVIFVDNSG-ADIILGILPFARELLRRGTQVILAANDL 251 (310)
Q Consensus 214 ~ilyl~DNaG-ediVfD~Lpli~~L~~~g~~V~l~vk~~ 251 (310)
||+|-+=..| . .++=-++++++|++ |++|.+++.+.
T Consensus 1 ril~~~~g~G~G-H~~r~~ala~~L~~-g~ev~~~~~~~ 37 (321)
T TIGR00661 1 KILYSVCGEGFG-HTTRSVAIGEALKN-DYEVSYIASGR 37 (321)
T ss_pred CEEEEEeccCcc-HHHHHHHHHHHHhC-CCeEEEEEcCC
Confidence 4666666777 6 66666689999888 99988877665
No 141
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.06 E-value=2e+02 Score=27.58 Aligned_cols=67 Identities=19% Similarity=0.264 Sum_probs=41.5
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEe-cCCCccccCChHHHHHHHHH------hhhhhhhccC--cccc
Q 021582 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAA-NDLPSINDVTYPELIEIMSK------LKDEKGQLMG--VDTS 282 (310)
Q Consensus 212 ~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~v-k~~P~lNDaT~~d~~~~l~~------~a~~~~~l~g--l~~~ 282 (310)
+++|++++- + -+.+. |++..|++.|..|+++= |+. ++.++.+. +......+.+ +.++
T Consensus 158 Gk~V~viGr-s---~~mG~-PmA~~L~~~g~tVtv~~~rT~---------~l~e~~~~ADIVIsavg~~~~v~~~~lk~G 223 (296)
T PRK14188 158 GLNAVVIGR-S---NLVGK-PMAQLLLAANATVTIAHSRTR---------DLPAVCRRADILVAAVGRPEMVKGDWIKPG 223 (296)
T ss_pred CCEEEEEcC-C---cchHH-HHHHHHHhCCCEEEEECCCCC---------CHHHHHhcCCEEEEecCChhhcchheecCC
Confidence 578888752 1 23477 99999999999999883 443 12222222 3333344444 4554
Q ss_pred ceEEecCCCCC
Q 021582 283 KLLIANSGNDL 293 (310)
Q Consensus 283 ~~~Vi~sG~~~ 293 (310)
..||+-|...
T Consensus 224 -avVIDvGin~ 233 (296)
T PRK14188 224 -ATVIDVGINR 233 (296)
T ss_pred -CEEEEcCCcc
Confidence 4788888765
No 142
>PLN02583 cinnamoyl-CoA reductase
Probab=21.01 E-value=1.4e+02 Score=27.73 Aligned_cols=33 Identities=33% Similarity=0.545 Sum_probs=24.9
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecC
Q 021582 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAAND 250 (310)
Q Consensus 213 k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~ 250 (310)
++|++ +-=+|. ++.- +++.|++.|++|+..+|.
T Consensus 7 k~vlV-TGatG~---IG~~-lv~~Ll~~G~~V~~~~R~ 39 (297)
T PLN02583 7 KSVCV-MDASGY---VGFW-LVKRLLSRGYTVHAAVQK 39 (297)
T ss_pred CEEEE-ECCCCH---HHHH-HHHHHHhCCCEEEEEEcC
Confidence 45554 444554 4886 999999999999998873
No 143
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=21.00 E-value=79 Score=24.90 Aligned_cols=43 Identities=21% Similarity=0.189 Sum_probs=28.6
Q ss_pred CCCHHHHHHHhcccCCCeEEEEecCCCcchhcchHHHHHHHHhCCCEE
Q 021582 197 IDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQV 244 (310)
Q Consensus 197 ~Dd~~~~~~~L~~~~~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V 244 (310)
+....++.+.|... .+++++++.|++. -- . -+++.|.++|..|
T Consensus 16 ipga~e~l~~L~~~-g~~~~~lTNns~~-s~--~-~~~~~L~~~Gi~~ 58 (101)
T PF13344_consen 16 IPGAVEALDALRER-GKPVVFLTNNSSR-SR--E-EYAKKLKKLGIPV 58 (101)
T ss_dssp -TTHHHHHHHHHHT-TSEEEEEES-SSS--H--H-HHHHHHHHTTTT-
T ss_pred CcCHHHHHHHHHHc-CCCEEEEeCCCCC-CH--H-HHHHHHHhcCcCC
Confidence 44566777777652 5889999999987 22 2 3778888888764
No 144
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=20.99 E-value=1.3e+02 Score=27.27 Aligned_cols=36 Identities=25% Similarity=0.385 Sum_probs=25.1
Q ss_pred eEEEEecCC-----CcchhcchHHHHHHHHhCCCEEEEEecCC
Q 021582 214 KAVIFVDNS-----GADIILGILPFARELLRRGTQVILAANDL 251 (310)
Q Consensus 214 ~ilyl~DNa-----GediVfD~Lpli~~L~~~g~~V~l~vk~~ 251 (310)
+|++++++. |. ...=. -+++.|.++|++|++++-..
T Consensus 1 kIl~i~~~~~~~~~G~-~~~~~-~l~~~L~~~g~~v~~~~~~~ 41 (394)
T cd03794 1 KILILSQYFPPELGGG-AFRTT-ELAEELVKRGHEVTVITGSP 41 (394)
T ss_pred CEEEEecccCCccCCc-ceeHH-HHHHHHHhCCceEEEEecCC
Confidence 477777763 45 33334 38899999999999887543
No 145
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=20.97 E-value=1.4e+02 Score=27.83 Aligned_cols=34 Identities=32% Similarity=0.481 Sum_probs=26.9
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecC
Q 021582 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAAND 250 (310)
Q Consensus 212 ~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~ 250 (310)
.+++++.+=+.|- +.- +++.|.+.|.+|+++.|.
T Consensus 6 ~k~vlVTGas~gI----G~~-~a~~L~~~G~~V~~~~r~ 39 (322)
T PRK07453 6 KGTVIITGASSGV----GLY-AAKALAKRGWHVIMACRN 39 (322)
T ss_pred CCEEEEEcCCChH----HHH-HHHHHHHCCCEEEEEECC
Confidence 4667777666554 886 999999999999999874
No 146
>PRK08177 short chain dehydrogenase; Provisional
Probab=20.95 E-value=1.6e+02 Score=25.75 Aligned_cols=35 Identities=31% Similarity=0.439 Sum_probs=25.8
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCC
Q 021582 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLP 252 (310)
Q Consensus 213 k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~P 252 (310)
+++++.+=..| ++.- +++.|.+.|.+|+++.|...
T Consensus 2 k~vlItG~sg~----iG~~-la~~l~~~G~~V~~~~r~~~ 36 (225)
T PRK08177 2 RTALIIGASRG----LGLG-LVDRLLERGWQVTATVRGPQ 36 (225)
T ss_pred CEEEEeCCCch----HHHH-HHHHHHhCCCEEEEEeCCCc
Confidence 35555554443 4886 99999999999999988753
No 147
>PF06967 Mo-nitro_C: Mo-dependent nitrogenase C-terminus; InterPro: IPR009717 This entry represents the C terminus (approximately 80 residues) of a number of bacterial Mo-dependent nitrogenases. These are involved in nitrogen fixation in cyanobacteria [].
Probab=20.91 E-value=6.4 Score=30.70 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=16.2
Q ss_pred HHHHHhcccCCCeEEEEecCCCcch
Q 021582 202 TFKVKWSKKAWKKAVIFVDNSGADI 226 (310)
Q Consensus 202 ~~~~~L~~~~~k~ilyl~DNaGedi 226 (310)
.+.+.+.+-.-|-+-|++|.|||||
T Consensus 56 PlYeqlv~LRFRAL~YLaDecgEDi 80 (84)
T PF06967_consen 56 PLYEQLVGLRFRALCYLADECGEDI 80 (84)
T ss_pred hhHHHHHHHHHHHHHHHHHHhCcch
Confidence 3444443212456889999999976
No 148
>PRK06101 short chain dehydrogenase; Provisional
Probab=20.88 E-value=1.4e+02 Score=26.51 Aligned_cols=32 Identities=22% Similarity=0.316 Sum_probs=24.2
Q ss_pred eEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecC
Q 021582 214 KAVIFVDNSGADIILGILPFARELLRRGTQVILAAND 250 (310)
Q Consensus 214 ~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~ 250 (310)
++++.+=+ |. ++.- +++.|.++|.+|+++.|.
T Consensus 3 ~vlItGas-~g---iG~~-la~~L~~~G~~V~~~~r~ 34 (240)
T PRK06101 3 AVLITGAT-SG---IGKQ-LALDYAKQGWQVIACGRN 34 (240)
T ss_pred EEEEEcCC-cH---HHHH-HHHHHHhCCCEEEEEECC
Confidence 45555544 44 3886 999999999999999875
No 149
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.88 E-value=1.6e+02 Score=28.10 Aligned_cols=68 Identities=21% Similarity=0.287 Sum_probs=45.4
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCCccccCChHHHHHHHHH------hhhhhhhccC--ccccc
Q 021582 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIMSK------LKDEKGQLMG--VDTSK 283 (310)
Q Consensus 212 ~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~P~lNDaT~~d~~~~l~~------~a~~~~~l~g--l~~~~ 283 (310)
.+++++++ .|. ++++ |++..|++.|..|+++-.. ..++.+.++. ++.+...+.+ ++++
T Consensus 158 Gk~vvViG--rs~--iVGk-Pla~lL~~~~atVt~~hs~--------t~~l~~~~~~ADIVV~avG~~~~i~~~~ik~g- 223 (285)
T PRK14189 158 GAHAVVIG--RSN--IVGK-PMAMLLLQAGATVTICHSK--------TRDLAAHTRQADIVVAAVGKRNVLTADMVKPG- 223 (285)
T ss_pred CCEEEEEC--CCC--ccHH-HHHHHHHHCCCEEEEecCC--------CCCHHHHhhhCCEEEEcCCCcCccCHHHcCCC-
Confidence 57888874 444 4489 8999999999999987432 2345544444 4444455544 6664
Q ss_pred eEEecCCCCC
Q 021582 284 LLIANSGNDL 293 (310)
Q Consensus 284 ~~Vi~sG~~~ 293 (310)
..||+-|...
T Consensus 224 avVIDVGin~ 233 (285)
T PRK14189 224 ATVIDVGMNR 233 (285)
T ss_pred CEEEEccccc
Confidence 4788888754
No 150
>PRK08251 short chain dehydrogenase; Provisional
Probab=20.84 E-value=1.4e+02 Score=26.28 Aligned_cols=34 Identities=32% Similarity=0.408 Sum_probs=25.6
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 021582 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (310)
Q Consensus 213 k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~ 251 (310)
+++++.+- +|. ++.- +++.|.+.|.+|+++.|..
T Consensus 3 k~vlItGa-s~g---iG~~-la~~l~~~g~~v~~~~r~~ 36 (248)
T PRK08251 3 QKILITGA-SSG---LGAG-MAREFAAKGRDLALCARRT 36 (248)
T ss_pred CEEEEECC-CCH---HHHH-HHHHHHHcCCEEEEEeCCH
Confidence 45665554 444 4887 9999999999999988754
No 151
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=20.78 E-value=2.8e+02 Score=19.95 Aligned_cols=36 Identities=19% Similarity=0.075 Sum_probs=23.1
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCC
Q 021582 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLP 252 (310)
Q Consensus 212 ~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~P 252 (310)
.+.|+++| ++|... .. .+..|.+.|.+=++.++|+.
T Consensus 56 ~~~iv~~c-~~g~~a---~~-~~~~l~~~G~~~v~~l~GG~ 91 (100)
T smart00450 56 DKPVVVYC-RSGNRS---AK-AAWLLRELGFKNVYLLDGGY 91 (100)
T ss_pred CCeEEEEe-CCCcHH---HH-HHHHHHHcCCCceEEecCCH
Confidence 45566666 777622 33 78888889977455666654
No 152
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=20.76 E-value=1.3e+02 Score=23.63 Aligned_cols=62 Identities=21% Similarity=0.179 Sum_probs=37.7
Q ss_pred HhhhcCCCCCCCCHHHHHHH-hcccCCCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecC
Q 021582 187 CQNLVPRPWVIDDLETFKVK-WSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAAND 250 (310)
Q Consensus 187 ~~~~~~~~~~~Dd~~~~~~~-L~~~~~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~ 250 (310)
+.++....+...+...+... +..-....++++...+|+ - -+.+-.++.++++|.+|+.....
T Consensus 27 l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~is~sg~-~-~~~~~~~~~ak~~g~~vi~iT~~ 89 (131)
T PF01380_consen 27 LQKLGRIVVISYEAGEFFHGPLENLDPDDLVIIISYSGE-T-RELIELLRFAKERGAPVILITSN 89 (131)
T ss_dssp HHHHHSSEEEEEEHHHHHTTGGGGCSTTEEEEEEESSST-T-HHHHHHHHHHHHTTSEEEEEESS
T ss_pred HHHhcCcceeccchHHHhhhhcccccccceeEeeecccc-c-hhhhhhhHHHHhcCCeEEEEeCC
Confidence 33333334444455554333 332234678888889998 3 24445778888899999887743
No 153
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=20.73 E-value=2e+02 Score=28.13 Aligned_cols=59 Identities=17% Similarity=0.178 Sum_probs=32.4
Q ss_pred HHHHHHhcccCCCeEEEEecCCCcch-hcchHHHHHHHHhCCCEEEEE--ecCCCccccCChHHHHHHH
Q 021582 201 ETFKVKWSKKAWKKAVIFVDNSGADI-ILGILPFARELLRRGTQVILA--ANDLPSINDVTYPELIEIM 266 (310)
Q Consensus 201 ~~~~~~L~~~~~k~ilyl~DNaGedi-VfD~Lpli~~L~~~g~~V~l~--vk~~P~lNDaT~~d~~~~l 266 (310)
+.+-+.+.+.+.+++++++|.+=.+. ++|. +.+.|.+.|.++.+. +...| |.+.+.+.+
T Consensus 19 ~~l~~~~~~~g~~~~lvvtd~~~~~~g~~~~--v~~~L~~~g~~~~~~~~v~~~p-----~~~~v~~~~ 80 (382)
T PRK10624 19 GALTDEVKRRGFKKALIVTDKTLVKCGVVAK--VTDVLDAAGLAYEIYDGVKPNP-----TIEVVKEGV 80 (382)
T ss_pred HHHHHHHHhcCCCEEEEEeCcchhhCcchHH--HHHHHHHCCCeEEEeCCCCCCc-----CHHHHHHHH
Confidence 33344443323589999999532222 3454 466677778776554 44444 445555443
No 154
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=20.59 E-value=2.1e+02 Score=25.84 Aligned_cols=56 Identities=18% Similarity=0.404 Sum_probs=38.1
Q ss_pred EEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCCccccCChHHHHHHHHHhhhhhhhccCccccceEEecCCCCCCC
Q 021582 216 VIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIMSKLKDEKGQLMGVDTSKLLIANSGNDLPV 295 (310)
Q Consensus 216 lyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~P~lNDaT~~d~~~~l~~~a~~~~~l~gl~~~~~~Vi~sG~~~pg 295 (310)
+.+.||=-- .++- |+++|...|.+|++..|. +++.+++... +- ...|||-|-+.|-
T Consensus 4 IL~IDNyDS-FtyN---Lv~yl~~lg~~v~V~rnd-----~~~~~~~~~~--------------~p-d~iviSPGPG~P~ 59 (191)
T COG0512 4 ILLIDNYDS-FTYN---LVQYLRELGAEVTVVRND-----DISLELIEAL--------------KP-DAIVISPGPGTPK 59 (191)
T ss_pred EEEEECccc-hHHH---HHHHHHHcCCceEEEECC-----ccCHHHHhhc--------------CC-CEEEEcCCCCChH
Confidence 456788766 4432 678999999999988776 4555544433 22 4589999877764
No 155
>PRK07576 short chain dehydrogenase; Provisional
Probab=20.58 E-value=1.5e+02 Score=26.76 Aligned_cols=34 Identities=21% Similarity=0.357 Sum_probs=26.0
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 021582 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (310)
Q Consensus 213 k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~ 251 (310)
+++++.+= +|. ++.- +++.|.+.|++|+++.|+.
T Consensus 10 k~ilItGa-sgg---IG~~-la~~l~~~G~~V~~~~r~~ 43 (264)
T PRK07576 10 KNVVVVGG-TSG---INLG-IAQAFARAGANVAVASRSQ 43 (264)
T ss_pred CEEEEECC-Cch---HHHH-HHHHHHHCCCEEEEEeCCH
Confidence 56666654 444 3886 9999999999999998753
No 156
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=20.57 E-value=3.1e+02 Score=25.91 Aligned_cols=83 Identities=14% Similarity=0.148 Sum_probs=53.1
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCCc--------cccCChHHHHHHHHH---hhhh-------h
Q 021582 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPS--------INDVTYPELIEIMSK---LKDE-------K 273 (310)
Q Consensus 212 ~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~P~--------lNDaT~~d~~~~l~~---~a~~-------~ 273 (310)
.+++++++= |. .++. +++.|...|.+|+++.|...- ...++.+++.+.+++ +... .
T Consensus 151 gk~v~IiG~--G~---iG~a-vA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~ii~~ 224 (287)
T TIGR02853 151 GSNVMVLGF--GR---TGMT-IARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPALVLTA 224 (287)
T ss_pred CCEEEEEcC--hH---HHHH-HHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChHHhCH
Confidence 478999874 65 4675 999999999999998886532 223344555555444 1111 1
Q ss_pred hhccCccccceEEecCCCCCCCCChhhh
Q 021582 274 GQLMGVDTSKLLIANSGNDLPVRNGSAA 301 (310)
Q Consensus 274 ~~l~gl~~~~~~Vi~sG~~~pg~~l~~~ 301 (310)
..+..+++ ...||+.++.--|+|++.+
T Consensus 225 ~~l~~~k~-~aliIDlas~Pg~tdf~~A 251 (287)
T TIGR02853 225 DVLSKLPK-HAVIIDLASKPGGTDFEYA 251 (287)
T ss_pred HHHhcCCC-CeEEEEeCcCCCCCCHHHH
Confidence 12334555 4688999988888888433
No 157
>PRK07856 short chain dehydrogenase; Provisional
Probab=20.49 E-value=1.5e+02 Score=26.40 Aligned_cols=34 Identities=21% Similarity=0.357 Sum_probs=26.4
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 021582 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (310)
Q Consensus 213 k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~ 251 (310)
+++++.+-+.|- +.- +++.|.+.|.+|+++.|..
T Consensus 7 k~~lItGas~gI----G~~-la~~l~~~g~~v~~~~r~~ 40 (252)
T PRK07856 7 RVVLVTGGTRGI----GAG-IARAFLAAGATVVVCGRRA 40 (252)
T ss_pred CEEEEeCCCchH----HHH-HHHHHHHCCCEEEEEeCCh
Confidence 566665555443 886 9999999999999998854
No 158
>PRK08267 short chain dehydrogenase; Provisional
Probab=20.49 E-value=1.2e+02 Score=26.98 Aligned_cols=35 Identities=23% Similarity=0.075 Sum_probs=26.6
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCC
Q 021582 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLP 252 (310)
Q Consensus 213 k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~P 252 (310)
|++++.+=+.| ++.- +++.|.+.|.+|++..|..+
T Consensus 2 k~vlItGasg~----iG~~-la~~l~~~G~~V~~~~r~~~ 36 (260)
T PRK08267 2 KSIFITGAASG----IGRA-TALLFAAEGWRVGAYDINEA 36 (260)
T ss_pred cEEEEeCCCch----HHHH-HHHHHHHCCCeEEEEeCCHH
Confidence 45666665544 3886 99999999999999887654
No 159
>PRK06182 short chain dehydrogenase; Validated
Probab=20.46 E-value=1.6e+02 Score=26.58 Aligned_cols=34 Identities=32% Similarity=0.303 Sum_probs=25.9
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 021582 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (310)
Q Consensus 213 k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~ 251 (310)
+++++.+= +|. ++.- +++.|.+.|++|++..|..
T Consensus 4 k~vlItGa-sgg---iG~~-la~~l~~~G~~V~~~~r~~ 37 (273)
T PRK06182 4 KVALVTGA-SSG---IGKA-TARRLAAQGYTVYGAARRV 37 (273)
T ss_pred CEEEEECC-CCh---HHHH-HHHHHHHCCCEEEEEeCCH
Confidence 56666654 443 3886 9999999999999988753
No 160
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=20.44 E-value=3.5e+02 Score=22.04 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=16.2
Q ss_pred hHHHHHHHHhC--CCEEEEEecCCCc
Q 021582 230 ILPFARELLRR--GTQVILAANDLPS 253 (310)
Q Consensus 230 ~Lpli~~L~~~--g~~V~l~vk~~P~ 253 (310)
.+.+++.+.+. +..+.+..++...
T Consensus 61 ~~~~i~~~~~~~~~~~~~i~T~~~~~ 86 (204)
T cd01335 61 LAELLRRLKKELPGFEISIETNGTLL 86 (204)
T ss_pred HHHHHHHHHhhCCCceEEEEcCcccC
Confidence 34567777777 6777777776553
No 161
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=20.43 E-value=7.8e+02 Score=27.28 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=19.4
Q ss_pred CCCCCCChh-HHHHHHHHHHHHHHcCCccch
Q 021582 91 PETHGGPPD-CILLCRLREQVLRELGFRDIF 120 (310)
Q Consensus 91 p~~~~~~~~-~r~~~~l~~~~~~~~g~~DPy 120 (310)
|+..|.--+ ||++.|..+.. +.+|+..||
T Consensus 287 Psn~grgYvlRrilRRa~r~~-~~lg~~~~~ 316 (865)
T PRK00252 287 PSNEGRGYVLRRILRRAVRHG-RLLGIKEPF 316 (865)
T ss_pred cCCCCcchHHHHHHHHHHHHH-HHhCCCchH
Confidence 444444333 67777777766 778999985
No 162
>PF09883 DUF2110: Uncharacterized protein conserved in archaea (DUF2110); InterPro: IPR016757 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.32 E-value=84 Score=29.01 Aligned_cols=45 Identities=16% Similarity=0.283 Sum_probs=35.6
Q ss_pred ccccCChHHHHHHHHHhhhhhhhcc----CccccceEEecCCCCCCCCCh
Q 021582 253 SINDVTYPELIEIMSKLKDEKGQLM----GVDTSKLLIANSGNDLPVRNG 298 (310)
Q Consensus 253 ~lNDaT~~d~~~~l~~~a~~~~~l~----gl~~~~~~Vi~sG~~~pg~~l 298 (310)
++|=+|.++++.+|.++-..-++.+ ||-+ ...|..-|++.||+.-
T Consensus 164 ~Vnsatr~ev~~alnrtGH~rDi~~vErLGLlE-~~vVc~e~Td~PGiia 212 (225)
T PF09883_consen 164 NVNSATRSEVRAALNRTGHARDIVTVERLGLLE-QSVVCREGTDAPGIIA 212 (225)
T ss_pred EEecccHHHHHHHHHhcccccceehhhhhhhhh-heeEecCCCCCCchHH
Confidence 4688999999999888666666543 6666 6789999999999853
No 163
>PRK06194 hypothetical protein; Provisional
Probab=20.27 E-value=1.5e+02 Score=26.89 Aligned_cols=33 Identities=39% Similarity=0.406 Sum_probs=25.6
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecC
Q 021582 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAAND 250 (310)
Q Consensus 213 k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~ 250 (310)
+++|+.+=+.|- +.- +++.|.++|.+|+++.+.
T Consensus 7 k~vlVtGasggI----G~~-la~~l~~~G~~V~~~~r~ 39 (287)
T PRK06194 7 KVAVITGAASGF----GLA-FARIGAALGMKLVLADVQ 39 (287)
T ss_pred CEEEEeCCccHH----HHH-HHHHHHHCCCEEEEEeCC
Confidence 567666655443 886 999999999999988765
No 164
>PRK07832 short chain dehydrogenase; Provisional
Probab=20.20 E-value=1.4e+02 Score=26.95 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=24.7
Q ss_pred eEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 021582 214 KAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (310)
Q Consensus 214 ~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~ 251 (310)
++++.+-+.|- +.- +++.|.+.|.+|+++.++.
T Consensus 2 ~vlItGas~gi----G~~-la~~la~~G~~vv~~~r~~ 34 (272)
T PRK07832 2 RCFVTGAASGI----GRA-TALRLAAQGAELFLTDRDA 34 (272)
T ss_pred EEEEeCCCCHH----HHH-HHHHHHHCCCEEEEEeCCH
Confidence 56666665554 786 8999999999998887653
No 165
>PRK07814 short chain dehydrogenase; Provisional
Probab=20.13 E-value=1.6e+02 Score=26.40 Aligned_cols=35 Identities=26% Similarity=0.263 Sum_probs=26.9
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 021582 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (310)
Q Consensus 212 ~k~ilyl~DNaGediVfD~Lpli~~L~~~g~~V~l~vk~~ 251 (310)
.+++++.+- +|. ++.- +++.|+++|.+|+++.|..
T Consensus 10 ~~~vlItGa-sgg---IG~~-~a~~l~~~G~~Vi~~~r~~ 44 (263)
T PRK07814 10 DQVAVVTGA-GRG---LGAA-IALAFAEAGADVLIAARTE 44 (263)
T ss_pred CCEEEEECC-CCh---HHHH-HHHHHHHCCCEEEEEeCCH
Confidence 367777665 444 3886 9999999999999999864
Done!