BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>021583
MLSLSYSLPPFTKIFEPIKISRNARSLVVCAARGPRPRYPRVWKARKRIGTISKSAKLVT
CIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQG
RTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFE
IFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAK
PKYELDSATEGKTNEVETTKNPNESSEEPEAAANLNESLEETEANTKELLEEADAISNES
DISSTSNVPG

High Scoring Gene Products

Symbol, full name Information P value
emb1417
AT4G21190
protein from Arabidopsis thaliana 9.9e-87
AT4G18975 protein from Arabidopsis thaliana 2.9e-39
AT1G04590 protein from Arabidopsis thaliana 1.0e-27
AT5G02860 protein from Arabidopsis thaliana 8.0e-05

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  021583
        (310 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2127388 - symbol:emb1417 "AT4G21190" species:3...   867  9.9e-87   1
TAIR|locus:505006498 - symbol:AT4G18975 "AT4G18975" speci...   419  2.9e-39   1
TAIR|locus:2197783 - symbol:AT1G04590 "AT1G04590" species...   310  1.0e-27   1
TAIR|locus:2151281 - symbol:AT5G02860 species:3702 "Arabi...   125  8.0e-05   1


>TAIR|locus:2127388 [details] [associations]
            symbol:emb1417 "AT4G21190" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0009793 "embryo development
            ending in seed dormancy" evidence=NAS] InterPro:IPR002885
            EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161554
            PROSITE:PS51375 EMBL:AL021960 Pfam:PF01535 Pfam:PF13812
            TIGRFAMs:TIGR00756 HOGENOM:HOG000242355 EMBL:AK175548 EMBL:AK176577
            EMBL:AK176584 EMBL:AY084397 IPI:IPI00524396 PIR:T04950
            RefSeq:NP_567622.1 UniGene:At.23696 UniGene:At.71130
            ProteinModelPortal:Q8LG95 PRIDE:Q8LG95 EnsemblPlants:AT4G21190.1
            GeneID:827867 KEGG:ath:AT4G21190 TAIR:At4g21190 eggNOG:NOG314664
            InParanoid:Q8LG95 OMA:GQGRTMG PhylomeDB:Q8LG95
            ProtClustDB:CLSN2689533 Genevestigator:Q8LG95 Uniprot:Q8LG95
        Length = 307

 Score = 867 (310.3 bits), Expect = 9.9e-87, P = 9.9e-87
 Identities = 171/258 (66%), Positives = 199/258 (77%)

Query:     1 MLSLSYSLPPF---TKIFEPIKISRNARSLVVCAARGPRPRYPRVWKARKRIGTISKSAK 57
             MLSL YSLP     T+       ++   ++VVCAARGPRPR PRVWK RKRIGTISK+AK
Sbjct:     1 MLSLRYSLPYLLLQTRESSTKLFTKKPNNVVVCAARGPRPRSPRVWKTRKRIGTISKAAK 60

Query:    58 LVTCIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSK 117
             ++ CIKGLSNVKEEVYGALDSFIAWELEFPL+ VKKAL  LE+EK+WK+IIQVTKWMLSK
Sbjct:    61 MIACIKGLSNVKEEVYGALDSFIAWELEFPLVIVKKALVILEDEKEWKKIIQVTKWMLSK 120

Query:   118 GQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEK 177
             GQGRTMGTYF LLNALAED RLDEAEELW K+F++HLEGTPR FF+KMISIYY R MH+K
Sbjct:   121 GQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKFFNKMISIYYKRDMHQK 180

Query:   178 MFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDXXXXXXXXXXXXXXXXRYIKGKRVRI 237
             +FE+FADMEELGV+PNV+IVSM+G  F KL M D                RYIKG+RV++
Sbjct:   181 LFEVFADMEELGVKPNVAIVSMVGKVFVKLEMKDKYEKLMKKYPPPQWEFRYIKGRRVKV 240

Query:   238 PAKPKYELDSATEGKTNE 255
              AK   EL     G +++
Sbjct:   241 KAKQLNELSEGEGGLSSD 258


>TAIR|locus:505006498 [details] [associations]
            symbol:AT4G18975 "AT4G18975" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] InterPro:IPR002885 GO:GO:0009507 EMBL:CP002687
            GenomeReviews:CT486007_GR EMBL:AL021711 EMBL:AL161549
            PROSITE:PS51375 TIGRFAMs:TIGR00756 EMBL:BT012648 EMBL:AK221620
            IPI:IPI00534141 IPI:IPI00656620 IPI:IPI00921719 PIR:T05034
            RefSeq:NP_001031667.1 RefSeq:NP_001119009.1 RefSeq:NP_001190768.1
            RefSeq:NP_567571.1 UniGene:At.23239 ProteinModelPortal:Q2V3H0
            STRING:Q2V3H0 EnsemblPlants:AT4G18975.1 EnsemblPlants:AT4G18975.3
            EnsemblPlants:AT4G18975.4 GeneID:827633 KEGG:ath:AT4G18975
            TAIR:At4g18975 eggNOG:NOG293136 HOGENOM:HOG000242355
            InParanoid:Q2V3H0 OMA:NEKEAVY PhylomeDB:Q2V3H0
            ProtClustDB:CLSN2689504 Genevestigator:Q2V3H0 Uniprot:Q2V3H0
        Length = 287

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 84/196 (42%), Positives = 112/196 (57%)

Query:    42 VWKARKRIGTISKSAKLVTCIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENE 101
             +WK     G+  K+  LV  + GL N KE VYGAL+ ++AWE+EFP+I   KAL+ L   
Sbjct:    85 LWKKNDSAGSGQKALNLVRMLSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKR 144

Query:   102 KDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIF 161
               W R+IQ+ KWMLSKGQG TMGTY +LL A   D R DEAE LW  I   H    PR  
Sbjct:   145 SQWHRVIQLAKWMLSKGQGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSIPRRL 204

Query:   162 FDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDXXXXXXXXXX 221
             F +MI++Y +  +H+K+ E+FADMEEL V P+      +  AF++L   +          
Sbjct:   205 FARMIALYAHHDLHDKVIEVFADMEELKVSPDEDSARRVARAFRELNQEENRKLILRRYL 264

Query:   222 XXXXXXRYIKGKRVRI 237
                    Y  G+RVR+
Sbjct:   265 SEYKYI-YFNGERVRV 279


>TAIR|locus:2197783 [details] [associations]
            symbol:AT1G04590 "AT1G04590" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] [GO:0000278 "mitotic cell cycle"
            evidence=RCA] [GO:0006396 "RNA processing" evidence=RCA]
            EMBL:CP002684 IPI:IPI00516308 RefSeq:NP_849590.1 UniGene:At.56217
            ProteinModelPortal:F4I5Q5 PRIDE:F4I5Q5 DNASU:839484
            EnsemblPlants:AT1G04590.2 GeneID:839484 KEGG:ath:AT1G04590
            OMA:HQIGENI PhylomeDB:F4I5Q5 Uniprot:F4I5Q5
        Length = 384

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 68/176 (38%), Positives = 102/176 (57%)

Query:    40 PRVWKARKRIGTISKSAKLVTCIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLE 99
             PR  +  + I    K   LV  +  + + KE VYGALD+++AWE  FP+ ++K  + +LE
Sbjct:   131 PRKHQIGENIPKKDKIKFLVNTLLDIEDNKEAVYGALDAWVAWERNFPIASLKIVIASLE 190

Query:   100 NEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPR 159
              E  W R++QV KW+LSKGQG TMGTY  L+ AL  D R +EA  +W K   + L   P 
Sbjct:   191 KEHQWHRMVQVIKWILSKGQGNTMGTYGQLIRALDMDRRAEEAHVIWRKKVGNDLHSVPW 250

Query:   160 IFFDKMISIYYNRGMHE---KMFEIFADMEELGVRP-NVSIVSMMGNAFQKLGMLD 211
                 +M+ IY+   M +   K+ ++F D+E    +P +  IV  + +A++ LGMLD
Sbjct:   251 QLCLQMMRIYFRNNMLQELVKVMKLFKDLESYDRKPPDKHIVQTVADAYELLGMLD 306


>TAIR|locus:2151281 [details] [associations]
            symbol:AT5G02860 species:3702 "Arabidopsis thaliana"
            [GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR011990
            InterPro:IPR002885 EMBL:CP002688 GenomeReviews:BA000015_GR
            Gene3D:1.25.40.10 PROSITE:PS51375 EMBL:AL162973 Pfam:PF01535
            TIGRFAMs:TIGR00756 eggNOG:NOG320495 Pfam:PF12854 Pfam:PF13041
            HOGENOM:HOG000241317 ProtClustDB:CLSN2683067 IPI:IPI00538555
            PIR:T48307 RefSeq:NP_195906.1 UniGene:At.54692
            ProteinModelPortal:Q9LYZ9 SMR:Q9LYZ9 PaxDb:Q9LYZ9 PRIDE:Q9LYZ9
            EnsemblPlants:AT5G02860.1 GeneID:831761 KEGG:ath:AT5G02860
            TAIR:At5g02860 InParanoid:Q9LYZ9 OMA:NTLISCC PhylomeDB:Q9LYZ9
            Genevestigator:Q9LYZ9 Uniprot:Q9LYZ9
        Length = 819

 Score = 125 (49.1 bits), Expect = 8.0e-05, P = 8.0e-05
 Identities = 41/151 (27%), Positives = 68/151 (45%)

Query:    58 LVTCIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSK 117
             L+TC K   ++ +E     +   A    +  +T    L         K  ++V   M+  
Sbjct:   285 LITCCKR-GSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLN 343

Query:   118 GQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGT-PRIF-FDKMISIYYNRGMH 175
             G   ++ TY  L++A A DG LDEA EL  ++     +GT P +F +  ++S +   G  
Sbjct:   344 GFSPSIVTYNSLISAYARDGMLDEAMELKNQMAE---KGTKPDVFTYTTLLSGFERAGKV 400

Query:   176 EKMFEIFADMEELGVRPNV----SIVSMMGN 202
             E    IF +M   G +PN+    + + M GN
Sbjct:   401 ESAMSIFEEMRNAGCKPNICTFNAFIKMYGN 431


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.135   0.391    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      310       268   0.00096  114 3  11 22  0.49    33
                                                     32  0.39    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  611 (65 KB)
  Total size of DFA:  197 KB (2111 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.90u 0.10s 21.00t   Elapsed:  00:00:00
  Total cpu time:  20.90u 0.10s 21.00t   Elapsed:  00:00:00
  Start:  Fri May 10 02:15:31 2013   End:  Fri May 10 02:15:31 2013

Back to top