BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021583
         (310 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2BK9|A Chain A, Drosophila Melanogaster Globin
          Length = 153

 Score = 31.6 bits (70), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 23/38 (60%)

Query: 120 GRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGT 157
           GR +  +   +  L +DG L++ +E+WTKI + H+  T
Sbjct: 63  GRIIRVFDESIQVLGQDGDLEKLDEIWTKIAVSHIPRT 100


>pdb|2G3H|A Chain A, Cyanide Binding And Heme Cavity Conformational Transitions
           In Drosophila Melanogaster Hexa-Coordinate Hemoglobin
          Length = 153

 Score = 31.2 bits (69), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 23/38 (60%)

Query: 120 GRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGT 157
           GR +  +   +  L +DG L++ +E+WTKI + H+  T
Sbjct: 63  GRIIRVFDESIQVLGQDGDLEKLDEIWTKIAVSHIPRT 100


>pdb|4A1F|A Chain A, Crystal Structure Of C-Terminal Domain Of Helicobacter
           Pylori Dnab Helicase
 pdb|4A1F|B Chain B, Crystal Structure Of C-Terminal Domain Of Helicobacter
           Pylori Dnab Helicase
          Length = 338

 Score = 31.2 bits (69), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 12/82 (14%)

Query: 80  IAWELEFPLITVKKALKTLENEKDWKRIIQVTK------------WMLSKGQGRTMGTYF 127
           +A ELE P+I + +  ++LEN  D + I+   K              L +G    M    
Sbjct: 191 LARELEIPIIALVQLNRSLENRDDKRPILSDIKDSGGIEQDADIVLFLYRGYIYQMRAED 250

Query: 128 LLLNALAEDGRLDEAEELWTKI 149
             ++ L ++G+++EA+EL+ K+
Sbjct: 251 NKIDKLKKEGKIEEAQELYLKV 272


>pdb|3AXS|A Chain A, Complex Structure Of Trna Methyltransferase Trm1 From
           Aquifex Aeolicus With Sinefungin
 pdb|3AXT|A Chain A, Complex Structure Of Trna Methyltransferase Trm1 From
           Aquifex Aeolicus With S-Adenosyl-L-Methionine
          Length = 392

 Score = 28.5 bits (62), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 5/58 (8%)

Query: 82  WELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRL 139
           W+ EF     ++A K  E EK+ KRI+++ K    + Q +T+G  F +L+ LAE  +L
Sbjct: 285 WDEEFTNFLYEEAQKREEIEKETKRILKLIK---EESQLQTVG--FYVLSKLAEKVKL 337


>pdb|4AEZ|C Chain C, Crystal Structure Of Mitotic Checkpoint Complex
 pdb|4AEZ|F Chain F, Crystal Structure Of Mitotic Checkpoint Complex
 pdb|4AEZ|I Chain I, Crystal Structure Of Mitotic Checkpoint Complex
          Length = 223

 Score = 27.7 bits (60), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 12/54 (22%), Positives = 30/54 (55%)

Query: 139 LDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRP 192
           +DE  EL++ +   H+     IF+++  + + +RG+ +K  E++   + +  +P
Sbjct: 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.135    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,668,728
Number of Sequences: 62578
Number of extensions: 272107
Number of successful extensions: 550
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 546
Number of HSP's gapped (non-prelim): 5
length of query: 310
length of database: 14,973,337
effective HSP length: 99
effective length of query: 211
effective length of database: 8,778,115
effective search space: 1852182265
effective search space used: 1852182265
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)