BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021583
(310 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LG95|PP332_ARATH Pentatricopeptide repeat-containing protein At4g21190
OS=Arabidopsis thaliana GN=EMB1417 PE=2 SV=1
Length = 307
Score = 386 bits (991), Expect = e-106, Method: Compositional matrix adjust.
Identities = 187/269 (69%), Positives = 218/269 (81%), Gaps = 13/269 (4%)
Query: 1 MLSLSYSLPPF--------TKIFEPIKISRNARSLVVCAARGPRPRYPRVWKARKRIGTI 52
MLSL YSLP TK+F ++ ++VVCAARGPRPR PRVWK RKRIGTI
Sbjct: 1 MLSLRYSLPYLLLQTRESSTKLF-----TKKPNNVVVCAARGPRPRSPRVWKTRKRIGTI 55
Query: 53 SKSAKLVTCIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTK 112
SK+AK++ CIKGLSNVKEEVYGALDSFIAWELEFPL+ VKKAL LE+EK+WK+IIQVTK
Sbjct: 56 SKAAKMIACIKGLSNVKEEVYGALDSFIAWELEFPLVIVKKALVILEDEKEWKKIIQVTK 115
Query: 113 WMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNR 172
WMLSKGQGRTMGTYF LLNALAED RLDEAEELW K+F++HLEGTPR FF+KMISIYY R
Sbjct: 116 WMLSKGQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKFFNKMISIYYKR 175
Query: 173 GMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKG 232
MH+K+FE+FADMEELGV+PNV+IVSM+G F KL M DKYEKL KKYPPP+WE+RYIKG
Sbjct: 176 DMHQKLFEVFADMEELGVKPNVAIVSMVGKVFVKLEMKDKYEKLMKKYPPPQWEFRYIKG 235
Query: 233 KRVRIPAKPKYELDSATEGKTNEVETTKN 261
+RV++ AK EL G +++ + N
Sbjct: 236 RRVKVKAKQLNELSEGEGGLSSDEDKIDN 264
>sp|Q2V3H0|PP322_ARATH Pentatricopeptide repeat-containing protein At4g18975,
chloroplastic OS=Arabidopsis thaliana GN=At4g18975 PE=2
SV=2
Length = 287
Score = 174 bits (442), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 86/197 (43%), Positives = 121/197 (61%), Gaps = 1/197 (0%)
Query: 41 RVWKARKRIGTISKSAKLVTCIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLEN 100
+WK G+ K+ LV + GL N KE VYGAL+ ++AWE+EFP+I KAL+ L
Sbjct: 84 HLWKKNDSAGSGQKALNLVRMLSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRK 143
Query: 101 EKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRI 160
W R+IQ+ KWMLSKGQG TMGTY +LL A D R DEAE LW I H PR
Sbjct: 144 RSQWHRVIQLAKWMLSKGQGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSIPRR 203
Query: 161 FFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKY 220
F +MI++Y + +H+K+ E+FADMEEL V P+ + AF++L + + + ++Y
Sbjct: 204 LFARMIALYAHHDLHDKVIEVFADMEELKVSPDEDSARRVARAFRELNQEENRKLILRRY 263
Query: 221 PPPKWEYRYIKGKRVRI 237
+++Y Y G+RVR+
Sbjct: 264 -LSEYKYIYFNGERVRV 279
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 11/166 (6%)
Query: 58 LVTCIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSK 117
L+TC K ++ +E + A + +T L K ++V M+
Sbjct: 285 LITCCK-RGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLN 343
Query: 118 GQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGT-PRIF-FDKMISIYYNRGMH 175
G ++ TY L++A A DG LDEA EL ++ +GT P +F + ++S + G
Sbjct: 344 GFSPSIVTYNSLISAYARDGMLDEAMELKNQM---AEKGTKPDVFTYTTLLSGFERAGKV 400
Query: 176 EKMFEIFADMEELGVRPNVSIVSMMGNAFQKL-GMLDKYEKLKKKY 220
E IF +M G +PN+ NAF K+ G K+ ++ K +
Sbjct: 401 ESAMSIFEEMRNAGCKPNICTF----NAFIKMYGNRGKFTEMMKIF 442
Score = 40.0 bits (92), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Query: 95 LKTLENEKDWKRIIQVTKWMLSKGQGRTM---GTYFLLLNALAEDGRLDEAEELWTKIFL 151
LK L K + ++ W + + ++M ++++ L ++GR+ A ++ +
Sbjct: 142 LKGLGFHKKFDLALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQE 201
Query: 152 DHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLG 208
D + +IS + N G + + +F MEE G +P + +++ N F K+G
Sbjct: 202 DGFS-LDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMG 257
>sp|Q8S9D1|PP395_ARATH Pentatricopeptide repeat-containing protein At5g21222
OS=Arabidopsis thaliana GN=ATC401 PE=2 SV=1
Length = 831
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 53/97 (54%), Gaps = 6/97 (6%)
Query: 121 RTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIF-FDKMISIYYNRGMHEKMF 179
RT GT ++N E+G+++EA + + + L P +F F+ +I + N + +
Sbjct: 532 RTCGT---IVNGYCEEGKMEEALRFFYR--MKELGVHPNLFVFNSLIKGFLNINDMDGVG 586
Query: 180 EIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKL 216
E+ MEE GV+P+V S + NA+ +G + + E++
Sbjct: 587 EVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEI 623
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 7/135 (5%)
Query: 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWT 147
L +K N D + +V M G + T+ L+NA + G + EE++T
Sbjct: 566 LFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYT 625
Query: 148 KIFLDHLEG--TPRIF-FDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAF 204
D LEG P I F + Y G EK +I M + GVRPNV I + + + +
Sbjct: 626 ----DMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGW 681
Query: 205 QKLGMLDKYEKLKKK 219
G + K ++ KK
Sbjct: 682 CSAGEMKKAMQVYKK 696
Score = 35.8 bits (81), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Query: 114 MLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRG 173
++ +G ++ TY L+ AL L +K+ + L+ I F+ +I+ G
Sbjct: 345 LIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLK-PDTILFNAIINASSESG 403
Query: 174 MHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKL 216
++ +IF M+E G +P S + + + K+G L++ +L
Sbjct: 404 NLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRL 446
Score = 32.3 bits (72), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 43/95 (45%)
Query: 114 MLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRG 173
M G T T+ L+ + G+L+E+ L + D + + ++ + N+
Sbjct: 415 MKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQR 474
Query: 174 MHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLG 208
E+ + I M+ GV+P+V + + A+ ++G
Sbjct: 475 KIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIG 509
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 56/108 (51%), Gaps = 14/108 (12%)
Query: 125 TYFLLLNALAEDGRLDEAEELWTK-----IFLDHLEGTPRIFFDKMISIYYNRGMHEKMF 179
+Y +++ A+ GR DEA L+ + I LD R+ ++ ++SIY G E+
Sbjct: 411 SYSTVIDGFAKAGRFDEALNLFGEMRYLGIALD------RVSYNTLLSIYTKVGRSEEAL 464
Query: 180 EIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEY 227
+I +M +G++ +V + + + K G KY+++KK + K E+
Sbjct: 465 DILREMASVGIKKDVVTYNALLGGYGKQG---KYDEVKKVFTEMKREH 509
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 57/104 (54%), Gaps = 3/104 (2%)
Query: 108 IQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIF-FDKMI 166
+ + + M S G + + TY LL + G+ DE ++++T++ +H+ P + + +I
Sbjct: 464 LDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHV--LPNLLTYSTLI 521
Query: 167 SIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGML 210
Y G++++ EIF + + G+R +V + S + +A K G++
Sbjct: 522 DGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLV 565
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 129 LLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEEL 188
+++ L G++ A+ ++ F G F +IS Y G+HE+ +F M+E
Sbjct: 239 MISTLGRYGKVTIAKRIFETAFAGGY-GNTVYAFSALISAYGRSGLHEEAISVFNSMKEY 297
Query: 189 GVRPNVSIVSMMGNAFQKLGM 209
G+RPN+ + + +A K GM
Sbjct: 298 GLRPNLVTYNAVIDACGKGGM 318
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 59/104 (56%), Gaps = 3/104 (2%)
Query: 114 MLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIF-FDKMISIYYNR 172
M+ +G TY +L+N L ++ ++D+AEE++ ++ + P +F + +I+ +
Sbjct: 583 MVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGI--APDVFSYGVLINGFSKL 640
Query: 173 GMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKL 216
G +K IF +M E G+ PNV I +M+ F + G ++K ++L
Sbjct: 641 GNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKEL 684
Score = 39.7 bits (91), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 125 TYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFAD 184
TY ++++ L ++G L+ A+EL+ ++ +L T I + +++ Y G +MF +F +
Sbjct: 807 TYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTV-ITYTSLLNGYDKMGRRAEMFPVFDE 865
Query: 185 MEELGVRPNVSIVSMMGNAFQKLGMLDK 212
G+ P+ + S++ NAF K GM K
Sbjct: 866 AIAAGIEPDHIMYSVIINAFLKEGMTTK 893
>sp|Q9M302|PP270_ARATH Pentatricopeptide repeat-containing protein At3g48810
OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1
Length = 659
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/161 (21%), Positives = 64/161 (39%), Gaps = 36/161 (22%)
Query: 87 PLITVKKAL-KTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLD----- 140
P+++V AL L E D+K ++ + M+ KG + +Y L+N L G+++
Sbjct: 244 PVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSF 303
Query: 141 ------------------------------EAEELWTKIFLDHLEGTPRIFFDKMISIYY 170
+A +LW ++ + ++ ++ +
Sbjct: 304 LTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFC 363
Query: 171 NRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLD 211
+ G K +F+ MEE+G PN+ + N F K G LD
Sbjct: 364 SHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLD 404
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 10/113 (8%)
Query: 125 TYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFAD 184
T+ +++ LA DG++D + L ++ L + +F +IS+Y G+ E+ E+F
Sbjct: 78 TFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFIS-VISVYRQVGLAERAVEMFYR 136
Query: 185 MEELGVRPNVSIV-----SMMG-NAFQKLGMLDKYEKLKKK-YPPPKWEYRYI 230
++E G P+V I +++G N Q + M+ Y +K+ + P + Y +
Sbjct: 137 IKEFGCDPSVKIYNHVLDTLLGENRIQMIYMV--YRDMKRDGFEPNVFTYNVL 187
>sp|Q9FGR7|PP426_ARATH Pentatricopeptide repeat-containing protein At5g50280,
chloroplastic OS=Arabidopsis thaliana GN=EMB1006 PE=2
SV=1
Length = 723
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 114 MLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRG 173
M +G ++ TY +L+A G + E+W + + ++GT RI ++ ++ + +G
Sbjct: 511 MCKEGIKPSVETYTSVLDAFRRSGDTGKLMEIWKLMLREKIKGT-RITYNTLLDGFAKQG 569
Query: 174 MHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219
++ + ++ ++ ++G++P+V +M+ NA+ + G K +L K+
Sbjct: 570 LYIEARDVVSEFSKMGLQPSVMTYNMLMNAYARGGQDAKLPQLLKE 615
Score = 32.3 bits (72), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 162 FDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLG 208
+ +I Y G HEK + F +M + G++P+V + + +AF++ G
Sbjct: 488 YTALIHAYSVSGWHEKAYASFEEMCKEGIKPSVETYTSVLDAFRRSG 534
>sp|Q9LVA2|PP443_ARATH Pentatricopeptide repeat-containing protein At5g62370
OS=Arabidopsis thaliana GN=At5g62370 PE=2 SV=1
Length = 982
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 125 TYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFAD 184
Y +++N A +GR+DEA EL ++ + H + +IS + GM EK +
Sbjct: 619 AYMIMINTYARNGRIDEANELVEEV-VKHFLRPSSFTYTVLISGFVKMGMMEKGCQYLDK 677
Query: 185 MEELGVRPNVSIVSMMGNAFQKLG 208
M E G+ PNV + + + F K G
Sbjct: 678 MLEDGLSPNVVLYTALIGHFLKKG 701
Score = 35.8 bits (81), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 11/139 (7%)
Query: 80 IAWELEFP------LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNAL 133
I EL+F LI V + K +N++D + M G T+ Y ++ +L
Sbjct: 537 IIQELDFVPDVDTYLIVVNELCK--KNDRDAA--FAIIDAMEELGLRPTVAIYSSIIGSL 592
Query: 134 AEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPN 193
+ GR+ EAEE + K+ ++ I + MI+ Y G ++ E+ ++ + +RP+
Sbjct: 593 GKQGRVVEAEETFAKMLESGIQ-PDEIAYMIMINTYARNGRIDEANELVEEVVKHFLRPS 651
Query: 194 VSIVSMMGNAFQKLGMLDK 212
+++ + F K+GM++K
Sbjct: 652 SFTYTVLISGFVKMGMMEK 670
>sp|Q940Q2|PPR19_ARATH Pentatricopeptide repeat-containing protein At1g07590,
mitochondrial OS=Arabidopsis thaliana GN=At1g07590 PE=2
SV=1
Length = 534
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 125 TYFLLLNALAEDGRLDEAEELWTKI-FLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFA 183
+Y L A A G LD AEELW ++ + L+ T + F+ ++S+Y G+ EK +F
Sbjct: 342 SYLLATEAFARVGNLDRAEELWLEMKNVKGLKETEQ--FNSLLSVYCKDGLIEKAIGVFR 399
Query: 184 DMEELGVRPN 193
+M G +PN
Sbjct: 400 EMTGNGFKPN 409
>sp|Q8L844|PP413_ARATH Pentatricopeptide repeat-containing protein At5g42310,
mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2
SV=1
Length = 709
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 9/91 (9%)
Query: 125 TYFLLLNALAEDGRLDEAEELWTKIFLDHLEG---TPRIF-FDKMISIYYNRGMHEKMFE 180
TY LL++A GR + A +I L +E P F F ++++ + +RG +K F+
Sbjct: 376 TYSLLIDAYVNAGRWESA-----RIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQ 430
Query: 181 IFADMEELGVRPNVSIVSMMGNAFQKLGMLD 211
+ +M+ +GV+P+ +++ + F K LD
Sbjct: 431 VLKEMKSIGVKPDRQFYNVVIDTFGKFNCLD 461
Score = 38.1 bits (87), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 59/126 (46%), Gaps = 4/126 (3%)
Query: 93 KALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLD 152
+ L + +W++ QV K M S G Y ++++ + LD A + ++ +
Sbjct: 414 RLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSE 473
Query: 153 HLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDK 212
+E R+ ++ +I + G H E+F ME G P + ++M N++ G ++
Sbjct: 474 GIE-PDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSY---GDQER 529
Query: 213 YEKLKK 218
++ +K+
Sbjct: 530 WDDMKR 535
Score = 35.0 bits (79), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 69/145 (47%), Gaps = 6/145 (4%)
Query: 61 CIKGLSNVKEEVYGALDSFIAWELEFPLITVKKAL-KTLENEKDWKRIIQVTKWMLSKGQ 119
C G V EE++ A++ P T + + +++ W + ++ M S+G
Sbjct: 490 CKHGRHIVAEEMFEAMERRGC----LPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGI 545
Query: 120 GRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMF 179
+ T+ L++ + GR ++A E ++ L+ + ++ + +I+ Y RG+ E+
Sbjct: 546 LPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMY-NALINAYAQRGLSEQAV 604
Query: 180 EIFADMEELGVRPNVSIVSMMGNAF 204
F M G++P++ ++ + NAF
Sbjct: 605 NAFRVMTSDGLKPSLLALNSLINAF 629
Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 57/126 (45%), Gaps = 1/126 (0%)
Query: 83 ELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEA 142
+LE + V + D + +Q+ + G T +++ALA+ GR EA
Sbjct: 264 KLELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEA 323
Query: 143 EELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGN 202
E L+ ++ ++ R ++ ++ Y G + + ++ME+ GV P+ S++ +
Sbjct: 324 EALFEELRQSGIKPRTRA-YNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLID 382
Query: 203 AFQKLG 208
A+ G
Sbjct: 383 AYVNAG 388
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 65/132 (49%), Gaps = 3/132 (2%)
Query: 89 ITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTK 148
+T + +D V K M+S G + TY LL+ L ++G+L++A ++
Sbjct: 436 VTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFE- 494
Query: 149 IFLDHLEGTPRIF-FDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKL 207
+L + P I+ ++ MI G E +++F + GV+P+V I + M + F +
Sbjct: 495 -YLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRK 553
Query: 208 GMLDKYEKLKKK 219
G+ ++ + L +K
Sbjct: 554 GLKEEADALFRK 565
Score = 38.1 bits (87), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
Query: 108 IQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMIS 167
+ + M+ +G + TY +++N L + G +D A L K+ +E I+ + S
Sbjct: 210 VALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDS 269
Query: 168 IYYNRGMHEK-MFEIFADMEELGVRPNV----SIVSMMGN 202
+ R HE +F +ME GVRPNV S++S + N
Sbjct: 270 LCKYR--HEDDALNLFTEMENKGVRPNVITYSSLISCLCN 307
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 56/124 (45%), Gaps = 6/124 (4%)
Query: 109 QVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISI 168
+ + M+SK + TY L+N + R+DE EL+ ++ L G + + +I
Sbjct: 386 HMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNT-VTYTTLIHG 444
Query: 169 YYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDK----YEKLKK-KYPPP 223
++ + +F M GV PN+ + + + K G L+K +E L++ K P
Sbjct: 445 FFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPT 504
Query: 224 KWEY 227
+ Y
Sbjct: 505 IYTY 508
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 63/129 (48%), Gaps = 9/129 (6%)
Query: 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWT 147
+IT + L N + W ++ M+ + + T+ L++A ++G+L EAE+L+
Sbjct: 295 VITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYD 354
Query: 148 KIFLDHLEGTPRIF-FDKMISIYYNRGMHEKMFE---IFADMEELGVRPNVSIVSMMGNA 203
++ ++ P IF + +I+ + MH+++ E +F M PNV + + N
Sbjct: 355 EMIKRSID--PDIFTYSSLINGFC---MHDRLDEAKHMFELMISKDCFPNVVTYNTLING 409
Query: 204 FQKLGMLDK 212
F K +D+
Sbjct: 410 FCKAKRIDE 418
>sp|Q9SV46|PP282_ARATH Pentatricopeptide repeat-containing protein At3g54980,
mitochondrial OS=Arabidopsis thaliana GN=At3g54980 PE=2
SV=1
Length = 851
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 3/110 (2%)
Query: 108 IQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTP-RIFFDKMI 166
+ + K ML G +GTY L++ L +DG L A EL+T++ L P I + ++
Sbjct: 709 LDLYKKMLKDGLRCDLGTYTTLIDGLLKDGNLILASELYTEMQAVGL--VPDEIIYTVIV 766
Query: 167 SIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKL 216
+ +G K+ ++F +M++ V PNV I + + + G LD+ +L
Sbjct: 767 NGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGHYREGNLDEAFRL 816
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 15/114 (13%)
Query: 114 MLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTK-----IFLDHLEGTPRIFFDKMISI 168
M G + TY L+N L ++ R+D+A E+ + + LD P + +I
Sbjct: 610 MCGNGISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLD----IPA--YGALIDG 663
Query: 169 YYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLG----MLDKYEKLKK 218
+ R E +F+++ E G+ P+ I + + + F+ LG LD Y+K+ K
Sbjct: 664 FCKRSNMESASALFSELLEEGLNPSQPIYNSLISGFRNLGNMVAALDLYKKMLK 717
>sp|Q9FMQ1|PP376_ARATH Pentatricopeptide repeat-containing protein At5g12100,
mitochondrial OS=Arabidopsis thaliana GN=At5g12100 PE=2
SV=1
Length = 816
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 108 IQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIF-FDKMI 166
+ +K ML KG + TY L++ L+ G+L EAE+L +I L+ P +F ++ +I
Sbjct: 549 FRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLK--PDVFTYNSLI 606
Query: 167 SIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGM 209
S Y G ++ ++ +M+ G++P + ++ + K G+
Sbjct: 607 SGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLISLCTKEGI 649
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 13/130 (10%)
Query: 125 TYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPR-IFFDKMISIYYNRGMHEKMFEIFA 183
T +LLNAL ++G++++AEE+ + L P + ++ MI Y +G
Sbjct: 356 TCSILLNALCKEGKIEKAEEILGREMAKGL--VPNEVIYNTMIDGYCRKGDLVGARMKIE 413
Query: 184 DMEELGVRPNVSIVSMMGNAFQKLGMLDKYE----KLKKKYPPPKWE-YRYIKGKRVRIP 238
ME+ G++P+ + + F +LG ++ E K+K K P E Y + G R
Sbjct: 414 AMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGR-- 471
Query: 239 AKPKYELDSA 248
KYE D
Sbjct: 472 ---KYEFDKC 478
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 31/130 (23%)
Query: 114 MLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKI--------------FLDH--LEGT 157
ML +G TY L+N L + GR+D A++L+ +I F+ H L+
Sbjct: 313 MLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRLDDA 372
Query: 158 PRIF---------------FDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGN 202
+ ++ +I Y+ G+ E+ DM G +PNV +++ +
Sbjct: 373 KAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVD 432
Query: 203 AFQKLGMLDK 212
F KLG +D+
Sbjct: 433 GFCKLGKIDE 442
Score = 32.7 bits (73), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 108 IQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMIS 167
++V M +KG + +Y +L++ + G++DEA + ++ D L+ + F+ +IS
Sbjct: 409 LEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNT-VGFNCLIS 467
Query: 168 IYYNRGMHEKMFEIFADMEELGVRPNV 194
+ + EIF +M G +P+V
Sbjct: 468 AFCKEHRIPEAVEIFREMPRKGCKPDV 494
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 3/132 (2%)
Query: 89 ITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTK 148
+T + +D V K M+S G + TY +LL+ L ++G+L +A ++
Sbjct: 434 VTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEY 493
Query: 149 IFLDHLEGTPRIF-FDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKL 207
+ +E P I+ ++ MI G E +E+F ++ GV PNV + M + F +
Sbjct: 494 LQRSTME--PDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRK 551
Query: 208 GMLDKYEKLKKK 219
G ++ + L KK
Sbjct: 552 GSKEEADSLLKK 563
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 10/178 (5%)
Query: 58 LVTCIKGL--SNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWML 115
T I GL N E +D + + L+T + L D + + K M
Sbjct: 191 FTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKME 250
Query: 116 SKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIF-FDKMISIYYNRGM 174
+ Y +++ L + +D+A L+T+ +D+ P +F + +IS N G
Sbjct: 251 KGKIEADVVIYNTIIDGLCKYKHMDDALNLFTE--MDNKGIRPDVFTYSSLISCLCNYGR 308
Query: 175 HEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKL-----KKKYPPPKWEY 227
+ +DM E + PNV S + +AF K G L + EKL K+ P + Y
Sbjct: 309 WSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTY 366
>sp|Q9LMH5|PPR42_ARATH Putative pentatricopeptide repeat-containing protein At1g13800
OS=Arabidopsis thaliana GN=At1g13800 PE=3 SV=1
Length = 883
Score = 40.8 bits (94), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 74/186 (39%), Gaps = 9/186 (4%)
Query: 39 YPRVWKARKRIGTISKSAKLVTCIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTL 98
+ ++ K RKRI + S+ ++ C + N E Y F + + A L
Sbjct: 349 FNKMLKKRKRINCVIVSS-ILQCYCQMGNF-SEAYDLFKEFRETNISLDRVCYNVAFDAL 406
Query: 99 ENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTP 158
+ I++ + M KG + Y L+ G+ +A +L + +D TP
Sbjct: 407 GKLGKVEEAIELFREMTGKGIAPDVINYTTLIGGCCLQGKCSDAFDLMIE--MDGTGKTP 464
Query: 159 RI-FFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDK----Y 213
I ++ + G+ ++ FE ME GV+P +M+ G LDK Y
Sbjct: 465 DIVIYNVLAGGLATNGLAQEAFETLKMMENRGVKPTYVTHNMVIEGLIDAGELDKAEAFY 524
Query: 214 EKLKKK 219
E L+ K
Sbjct: 525 ESLEHK 530
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 40.4 bits (93), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 3/122 (2%)
Query: 89 ITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTK 148
+T ++ L D ++ K M+S G + TY +LL+ L + G+L++A ++
Sbjct: 431 VTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFE- 489
Query: 149 IFLDHLEGTPRIF-FDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKL 207
+L + P I+ ++ MI G E +++F + GV+PNV I + M + F +
Sbjct: 490 -YLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRK 548
Query: 208 GM 209
G+
Sbjct: 549 GL 550
Score = 36.2 bits (82), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 72/176 (40%), Gaps = 10/176 (5%)
Query: 60 TCIKGL--SNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSK 117
T I GL N E +D +A + L T + L D + + K M
Sbjct: 190 TLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKG 249
Query: 118 GQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIF-FDKMISIYYNRGMHE 176
+ Y +++AL +++A L+T+ +D+ P + ++ +I N G
Sbjct: 250 KIEADVVIYTTIIDALCNYKNVNDALNLFTE--MDNKGIRPNVVTYNSLIRCLCNYGRWS 307
Query: 177 KMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKL-----KKKYPPPKWEY 227
+ +DM E + PNV S + +AF K G L + EKL K+ P + Y
Sbjct: 308 DASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTY 363
Score = 31.6 bits (70), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 125 TYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFAD 184
TY +++ + + G++++ +L+ + L ++ I + MIS + +G+ E+ +F +
Sbjct: 502 TYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNV-IIYTTMISGFCRKGLKEEADALFRE 560
Query: 185 MEELGVRPN 193
M+E G PN
Sbjct: 561 MKEDGTLPN 569
Score = 31.2 bits (69), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 71/154 (46%), Gaps = 13/154 (8%)
Query: 60 TCIKGLSNVKEEVYGALDSFIAWE---LEFPLITVKKALKTLENEKDWKRIIQVTKWMLS 116
T I L N K V AL+ F + + ++T ++ L N W ++ M+
Sbjct: 260 TIIDALCNYKN-VNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIE 318
Query: 117 KGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIF-FDKMISIYYNRGMH 175
+ + T+ L++A ++G+L EAE+L+ ++ ++ P IF + +I+ + MH
Sbjct: 319 RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSID--PDIFTYSSLINGF---CMH 373
Query: 176 EKMFE---IFADMEELGVRPNVSIVSMMGNAFQK 206
+++ E +F M PNV + + F K
Sbjct: 374 DRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCK 407
>sp|Q9SFV9|PP218_ARATH Pentatricopeptide repeat-containing protein At3g07290,
mitochondrial OS=Arabidopsis thaliana GN=At3g07290 PE=2
SV=1
Length = 880
Score = 40.4 bits (93), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 74/187 (39%), Gaps = 23/187 (12%)
Query: 39 YPRVWKARKRIGTISKSAKLVTC----------IKGLSNVK--EEVYGALDSFIAWELEF 86
+ R R + +K VTC I GL V EE +G D +
Sbjct: 240 FCRGLNLRDALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQP 299
Query: 87 PLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELW 146
T +K L + + + M+ +G + TY +L++ L DG+++EA +
Sbjct: 300 STRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVC 359
Query: 147 TKIFLDHLEGTPRIF-----FDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMG 201
K+ D RIF ++ +I+ Y G FE+ ME+ +PNV + +
Sbjct: 360 RKMVKD------RIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELM 413
Query: 202 NAFQKLG 208
++G
Sbjct: 414 EGLCRVG 420
Score = 32.0 bits (71), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 126 YFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADM 185
Y +++N L + GR++EAE+L + + D + + M+ Y N G ++ E M
Sbjct: 619 YTIIINGLCQFGRVEEAEKLLSAM-QDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAM 677
Query: 186 EELGVRPNVSIVSMMGNAF 204
E G N I S + F
Sbjct: 678 VERGYELNDRIYSSLLQGF 696
>sp|Q3EDA9|PPR46_ARATH Putative pentatricopeptide repeat-containing protein At1g16830
OS=Arabidopsis thaliana GN=At1g16830 PE=3 SV=2
Length = 608
Score = 40.4 bits (93), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/126 (18%), Positives = 63/126 (50%), Gaps = 8/126 (6%)
Query: 108 IQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIF-FDKMI 166
QV M+ G ++ + +L++ G +A +L+ K+ + +P + + +I
Sbjct: 232 FQVVGLMICSGISVSVNVWSMLVSGFFRSGEPQKAVDLFNKMI--QIGCSPNLVTYTSLI 289
Query: 167 SIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKL-----KKKYP 221
+ + GM ++ F + + ++ G+ P++ + ++M + + +LG ++ K+ K+K
Sbjct: 290 KGFVDLGMVDEAFTVLSKVQSEGLAPDIVLCNLMIHTYTRLGRFEEARKVFTSLEKRKLV 349
Query: 222 PPKWEY 227
P ++ +
Sbjct: 350 PDQYTF 355
>sp|Q9M065|PP352_ARATH Pentatricopeptide repeat-containing protein At4g36680,
mitochondrial OS=Arabidopsis thaliana GN=At4g36680 PE=1
SV=1
Length = 412
Score = 40.4 bits (93), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 58/111 (52%), Gaps = 2/111 (1%)
Query: 106 RIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKM 165
+ I++ + M KG T + +L++L + G L+ A+ LW ++ E + ++
Sbjct: 192 KAIEIMRQMQGKGMEVTTIAFTTILSSLYKKGELEVADNLWNEMVKKGCELDNAAYNVRI 251
Query: 166 ISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKL 216
+S + E++ E+ +M +G++P+ + + A+ + GMLD+ +K+
Sbjct: 252 MSA--QKESPERVKELIEEMSSMGLKPDTISYNYLMTAYCERGMLDEAKKV 300
>sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300,
mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2
SV=1
Length = 537
Score = 40.0 bits (92), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 62/135 (45%), Gaps = 10/135 (7%)
Query: 109 QVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISI 168
+V K M G + TY ++++AL G++ A +++ + LD I F+ ++ +
Sbjct: 276 KVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADM-LDSGCAPNAITFNNLMRV 334
Query: 169 YYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWE-- 226
+ G EK+ +++ M++LG P+ + + A + L+ K+ K E
Sbjct: 335 HVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVN 394
Query: 227 -------YRYIKGKR 234
+RYI+ KR
Sbjct: 395 ASTFNTIFRYIEKKR 409
>sp|Q9LUJ4|PP248_ARATH Pentatricopeptide repeat-containing protein At3g22670,
mitochondrial OS=Arabidopsis thaliana GN=At3g22670 PE=2
SV=1
Length = 562
Score = 39.7 bits (91), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Query: 101 EKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRI 160
E D++R+ ++ + M G + TY +++++L + ++ EA ++ K+ D +
Sbjct: 321 EGDFRRVNEMLEEMRENGCNPNVVTYTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAK- 379
Query: 161 FFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNA 203
F+ +I I G + EIF DM GVR +V + + M +A
Sbjct: 380 FYSSLIHILSKTGRFKDAAEIFEDMTNQGVRRDVLVYNTMISA 422
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2
SV=1
Length = 633
Score = 39.7 bits (91), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 12/124 (9%)
Query: 110 VTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIY 169
V +M+ G+ LL+ A+ G + +A KIF D L + ++ +++ Y
Sbjct: 284 VHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDAR----KIF-DRLAKRDVVSWNSLLTAY 338
Query: 170 YNRGMHEKMFEIFADMEELGVRPN-VSIVSMMGNAFQKLGMLDK----YEKLKKK-YPPP 223
G ++ F +M +G+RPN +S +S++ A G+LD+ YE +KK P
Sbjct: 339 AQHGFGKEAVWWFEEMRRVGIRPNEISFLSVL-TACSHSGLLDEGWHYYELMKKDGIVPE 397
Query: 224 KWEY 227
W Y
Sbjct: 398 AWHY 401
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 39.7 bits (91), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 63/127 (49%), Gaps = 7/127 (5%)
Query: 125 TYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFAD 184
T+ L++ L + GR+D+A +++ K+ LD T I + +I ++N G E +I+ D
Sbjct: 449 TFCSLIDGLGKVGRVDDAYKVYEKM-LDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKD 507
Query: 185 MEELGVRPNVSIVSMMGNAFQKLGMLDK----YEKLK-KKYPPPKWEYRYIKGKRVRIP- 238
M P++ +++ + K G +K +E++K +++ P Y + ++
Sbjct: 508 MINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGF 567
Query: 239 AKPKYEL 245
A YEL
Sbjct: 568 ANETYEL 574
Score = 36.2 bits (82), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 13/106 (12%)
Query: 125 TYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRI----FFDKMISIYYNRGMHEKMFE 180
TY ++ L + RLDEA E++ +HLE R+ ++ MI Y + G ++ +
Sbjct: 275 TYTSMIGVLCKANRLDEAVEMF-----EHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYS 329
Query: 181 IFADMEELGVRPNVSIVSMMGNAFQKLGMLDK----YEKLKKKYPP 222
+ G P+V + + +K+G +D+ +E++KK P
Sbjct: 330 LLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAAP 375
Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 57/113 (50%), Gaps = 8/113 (7%)
Query: 116 SKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRI-FFDKMISIYYNRGM 174
+KG ++ Y +L L + G++DEA +++ ++ D P + ++ +I + G
Sbjct: 336 AKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKD---AAPNLSTYNILIDMLCRAGK 392
Query: 175 HEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDK----YEKLKKKYPPP 223
+ FE+ M++ G+ PNV V++M + K LD+ +E++ K P
Sbjct: 393 LDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTP 445
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 39.7 bits (91), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 55/105 (52%), Gaps = 8/105 (7%)
Query: 118 GQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGT-PRIF-FDKMISIYYNRGMH 175
G G + T +++NAL +DG++++ +++ +G P I ++ +IS Y ++G+
Sbjct: 230 GVGINVYTLNIMVNALCKDGKMEKVGTFLSQV---QEKGVYPDIVTYNTLISAYSSKGLM 286
Query: 176 EKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKY 220
E+ FE+ M G P V + + N K G KYE+ K+ +
Sbjct: 287 EEAFELMNAMPGKGFSPGVYTYNTVINGLCKHG---KYERAKEVF 328
Score = 32.0 bits (71), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 13/104 (12%)
Query: 114 MLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDK------MIS 167
ML +G + TY +L+ L + L EA++L+ E T R F +I
Sbjct: 436 MLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFN-------EMTERALFPDSYTLTILID 488
Query: 168 IYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLD 211
+ G + E+F M+E +R +V + + + F K+G +D
Sbjct: 489 GHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDID 532
>sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900
OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1
Length = 907
Score = 39.7 bits (91), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 99 ENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTP 158
+ E D ++ +++ +L KG TY +L+ GR++EA EL T++ D +
Sbjct: 764 KGEVDMQKAVELHNAIL-KGLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVS-PD 821
Query: 159 RIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPN 193
I + MI+ R +K E++ M E G+RP+
Sbjct: 822 CITYTTMINELCRRNDVKKAIELWNSMTEKGIRPD 856
>sp|O80958|PP194_ARATH Pentatricopeptide repeat-containing protein At2g39230,
mitochondrial OS=Arabidopsis thaliana GN=LOJ PE=1 SV=1
Length = 867
Score = 39.7 bits (91), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 103 DWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLE-GTPRIF 161
D ++ + M G+ + T+ L+N + R+D A E+ ++ L+ P
Sbjct: 605 DTDSAVETYREMSENGKSPNVVTFTSLINGFCKSNRMDLALEMTHEMKSMELKLDLPA-- 662
Query: 162 FDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219
+ +I + + + + +F+++ ELG+ PNVS+ + + + F+ LG +D L KK
Sbjct: 663 YGALIDGFCKKNDMKTAYTLFSELPELGLMPNVSVYNSLISGFRNLGKMDAAIDLYKK 720
>sp|Q9FKR3|PP404_ARATH Pentatricopeptide repeat-containing protein At5g38730
OS=Arabidopsis thaliana GN=At5g38730 PE=2 SV=1
Length = 596
Score = 39.3 bits (90), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 63/123 (51%), Gaps = 3/123 (2%)
Query: 95 LKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHL 154
L +L ++ + ++ K M+ G + Y +L++A ++ G ++AE+L ++ ++
Sbjct: 175 LNSLVKQRLTDTVWKIFKKMVKLGVVANIHVYNVLVHACSKSGDPEKAEKLLSE--MEEK 232
Query: 155 EGTPRIF-FDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKY 213
P IF ++ +IS+Y + MH + + ME GV PN+ + + F + G + +
Sbjct: 233 GVFPDIFTYNTLISVYCKKSMHFEALSVQDRMERSGVAPNIVTYNSFIHGFSREGRMREA 292
Query: 214 EKL 216
+L
Sbjct: 293 TRL 295
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 39.3 bits (90), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 15/185 (8%)
Query: 62 IKGLSNVKEEVYGALDSFIAWELE--FPLI-TVKKALKTLENEKDWKRIIQVTKWMLSKG 118
I GL V + A+D F+ + + FP + T +K+L + + + K M G
Sbjct: 295 IHGLC-VARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETG 353
Query: 119 QGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIF-FDKMISIYYNRGMHEK 177
+ TY +L+++L + ++A EL ++ L P + ++ +I+ Y RGM E
Sbjct: 354 IKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGL--MPNVITYNALINGYCKRGMIED 411
Query: 178 MFEIFADMEELGVRPNVSIVSMM------GNAFQKLGMLDKYEKLKKKYPPPKWEYRYIK 231
++ ME + PN + + N + +G+L+K L++K P Y +
Sbjct: 412 AVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKM--LERKVLPDVVTYNSLI 469
Query: 232 GKRVR 236
+ R
Sbjct: 470 DGQCR 474
Score = 36.2 bits (82), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 123 MGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIF-FDKMISIYYNRGMHEKMFEI 181
+G Y LLN+LA G +DE ++++ ++ D + P I+ ++KM++ Y G E+ +
Sbjct: 183 IGCYNTLLNSLARFGLVDEMKQVYMEMLEDKV--CPNIYTYNKMVNGYCKLGNVEEANQY 240
Query: 182 FADMEELGVRPN 193
+ + E G+ P+
Sbjct: 241 VSKIVEAGLDPD 252
Score = 35.4 bits (80), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 2/144 (1%)
Query: 57 KLVTCIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLS 116
K+V L NV EE + + L+ T + KD +V M
Sbjct: 223 KMVNGYCKLGNV-EEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPL 281
Query: 117 KGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHE 176
KG R Y L++ L R+DEA +L+ K+ D T R + + S+ + E
Sbjct: 282 KGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSE 341
Query: 177 KMFEIFADMEELGVRPNVSIVSMM 200
+ + +MEE G++PN+ +++
Sbjct: 342 AL-NLVKEMEETGIKPNIHTYTVL 364
Score = 35.0 bits (79), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 7/106 (6%)
Query: 89 ITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTK 148
I + + LK + + + R Q MLS G TY + +GRL +AE++ K
Sbjct: 607 ILIHRLLKDGDFDHAYSRFQQ----MLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAK 662
Query: 149 IFLDHLEGTPRIF-FDKMISIYYNRGMHEKMFEIFADMEELGVRPN 193
+ + + +P +F + +I Y + G F++ M + G P+
Sbjct: 663 MRENGV--SPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPS 706
>sp|Q0WPZ6|PP158_ARATH Pentatricopeptide repeat-containing protein At2g17140
OS=Arabidopsis thaliana GN=At2g17140 PE=2 SV=1
Length = 874
Score = 39.3 bits (90), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 125 TYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIF-FDKMISIYYNRGMHEKMFEIFA 183
T+ LL+ AL + +D A EL+ + + P F F ++ Y G+ +K E+
Sbjct: 149 TFNLLIRALCDSSCVDAARELFDE--MPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLN 206
Query: 184 DMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219
ME GV PN I + + ++F + G D EK+ +K
Sbjct: 207 AMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEK 242
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Query: 125 TYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFAD 184
TY LLN L + GR EA+ L+ ++ + L+ + ++ I + +G F + D
Sbjct: 526 TYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQ-PDSVAYNIFIHHFCKQGKISSAFRVLKD 584
Query: 185 MEELGVRPNV----SIVSMMG---NAFQKLGMLDK 212
ME+ G ++ S++ +G F+ G++D+
Sbjct: 585 MEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDE 619
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 38.9 bits (89), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 62/119 (52%), Gaps = 7/119 (5%)
Query: 110 VTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIF-FDKMISI 168
V K M+S G + TY +LL+ L +G+++ A ++ +L + P I+ ++ MI
Sbjct: 453 VFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFE--YLQRSKMEPDIYTYNIMIEG 510
Query: 169 YYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDK----YEKLKKKYPPP 223
G E +++F + GV+PNV + M + F + G+ ++ + ++K++ P P
Sbjct: 511 MCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLP 569
Score = 34.7 bits (78), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 75/179 (41%), Gaps = 16/179 (8%)
Query: 60 TCIKGL--SNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSK 117
T I GL N E +D + + L+T + L D + + K M
Sbjct: 191 TLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKM--- 247
Query: 118 GQGRT---MGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIF-FDKMISIYYNRG 173
QG+ + Y +++AL +++A L+T+ +D+ P + ++ +I N G
Sbjct: 248 EQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTE--MDNKGIRPNVVTYNSLIRCLCNYG 305
Query: 174 MHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKL-----KKKYPPPKWEY 227
+ +DM E + PNV S + +AF K G L + EKL K+ P + Y
Sbjct: 306 RWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTY 364
Score = 31.2 bits (69), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 74/160 (46%), Gaps = 13/160 (8%)
Query: 60 TCIKGLSNVKEEVYGALDSFIAWE---LEFPLITVKKALKTLENEKDWKRIIQVTKWMLS 116
T I L N K V AL+ F + + ++T ++ L N W ++ M+
Sbjct: 261 TIIDALCNYKN-VNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIE 319
Query: 117 KGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIF-FDKMISIYYNRGMH 175
+ + T+ L++A ++G+L EAE+L+ ++ ++ P IF + +I+ + MH
Sbjct: 320 RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSID--PDIFTYSSLINGFC---MH 374
Query: 176 EKMFE---IFADMEELGVRPNVSIVSMMGNAFQKLGMLDK 212
+++ E +F M PNV + + F K +D+
Sbjct: 375 DRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDE 414
>sp|P0C896|PP209_ARATH Pentatricopeptide repeat-containing protein At3g02650,
mitochondrial OS=Arabidopsis thaliana GN=At3g02650 PE=2
SV=1
Length = 576
Score = 38.9 bits (89), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 103 DWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFF 162
D +V K M S+G + TY ++++ A+ G +DEA+E+ + H + +P + +
Sbjct: 422 DLDEAKEVLKLMESRGLKPDVYTYTVIISGYAKGGMMDEAQEILAEAKKKHKKLSP-VTY 480
Query: 163 DKMISIYYNRGMHEKMFEIFADMEELGVRPN 193
+I Y +++ ++ +M+ GV+PN
Sbjct: 481 HALIRGYCKIEEYDEALKLLNEMDRFGVQPN 511
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 6/99 (6%)
Query: 87 PLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELW 146
P V +L + N KD K ++ M+SKG + L+++A ++ G LDEA+E+
Sbjct: 374 PFSDVIHSLCRMRNVKDAKALLLD---MISKGPAPGNAVFNLVVHACSKTGDLDEAKEVL 430
Query: 147 TKIFLDHLEGTPRIF-FDKMISIYYNRGMHEKMFEIFAD 184
++ P ++ + +IS Y GM ++ EI A+
Sbjct: 431 K--LMESRGLKPDVYTYTVIISGYAKGGMMDEAQEILAE 467
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 7/113 (6%)
Query: 105 KRIIQVTKWMLSKGQGRTMGTYFL--LLNALAEDGRLDEAEELWTKIF-LDHLEGTPRI- 160
K +I+ KW ++ + T+ T + LL A+A D R +A LW + + E +
Sbjct: 172 KNLIRFLKWA-TQNEEITVTTSLVESLLVAIASDTRRMDAYGLWDLVKEIGEKESCGVLN 230
Query: 161 --FFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLD 211
+++I+++ G + F++F+ EE G PN + A K +D
Sbjct: 231 LEILNELIALFGKLGKSKAAFDVFSKTEEFGFTPNAKTYYLTLEALCKRSFMD 283
>sp|Q9LS25|PP420_ARATH Pentatricopeptide repeat-containing protein At5g46580,
chloroplastic OS=Arabidopsis thaliana GN=At5g46580 PE=2
SV=1
Length = 711
Score = 38.9 bits (89), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 126 YFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIF-FDKMISIYYNRGMHEKMFEIFAD 184
Y LLN A+ G +EAE L+ + + ++ P F + M++IY + G EK E+F +
Sbjct: 399 YNTLLNMCADIGLEEEAERLFNDM-KESVQCRPDNFSYTAMLNIYGSGGKAEKAMELFEE 457
Query: 185 MEELGVRPNV----SIVSMMGNA 203
M + GV+ NV +V +G A
Sbjct: 458 MLKAGVQVNVMGCTCLVQCLGKA 480
>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850,
chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1
Length = 862
Score = 38.5 bits (88), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 63/122 (51%), Gaps = 4/122 (3%)
Query: 95 LKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHL 154
+ L E + ++V M S+G R++ +Y L+NA +GR + + EL ++ + +
Sbjct: 148 ISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKI 207
Query: 155 EGTPRIF-FDKMISIYYNRGMH-EKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDK 212
+P I ++ +I+ G+ E + +FA+M G++P++ + + +A G+ D+
Sbjct: 208 --SPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDE 265
Query: 213 YE 214
E
Sbjct: 266 AE 267
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 51/112 (45%), Gaps = 1/112 (0%)
Query: 105 KRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDK 164
K + V M + G TY +LLN + GR D+ +L+ ++ + + ++
Sbjct: 334 KEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAAT-YNI 392
Query: 165 MISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKL 216
+I ++ G +++ +F DM E + P++ + A K G+ + K+
Sbjct: 393 LIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKI 444
>sp|O65567|PP342_ARATH Pentatricopeptide repeat-containing protein At4g30825,
chloroplastic OS=Arabidopsis thaliana GN=At4g30825 PE=2
SV=2
Length = 904
Score = 38.5 bits (88), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 95 LKTLENEKDWKRIIQVTKWMLSKGQGRTMG---TYFLLLNALAEDGRLDEAEELWTKIFL 151
LK LE+ D I+ WM + G+ +G Y L+L L D AE+L ++
Sbjct: 146 LKRLESCSD-TNAIKFFDWM--RCNGKLVGNFVAYSLILRVLGRREEWDRAEDLIKELCG 202
Query: 152 DHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQK 206
H F+ +I +G + + F M E GVRPNV+ + M+ +QK
Sbjct: 203 FHEFQKSYQVFNTVIYACTKKGNVKLASKWFHMMLEFGVRPNVATIGMLMGLYQK 257
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 38.1 bits (87), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 10/133 (7%)
Query: 86 FPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEEL 145
FPL+ LK K I + ++ G + LL+ + GRL++A +L
Sbjct: 114 FPLV-----LKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKL 168
Query: 146 WTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQ 205
+ D + + + + S Y G H + ++F M E+GV+P+ + + +A
Sbjct: 169 F-----DEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACV 223
Query: 206 KLGMLDKYEKLKK 218
+G LD E + K
Sbjct: 224 HVGDLDSGEWIVK 236
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 38.1 bits (87), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Query: 114 MLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRG 173
M+S+G ++ TY +LL+ L ++G L++A E++ K+ + I+ + +I N
Sbjct: 446 MVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIY-NIIIHGMCNAS 504
Query: 174 MHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219
+ + +F + + GV+P+V ++M K G L + + L +K
Sbjct: 505 KVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRK 550
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 56/115 (48%), Gaps = 7/115 (6%)
Query: 109 QVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPR-IFFDKMIS 167
Q+ M+SKG + TY +L+N+ + R+D+ L+ +I L P I ++ ++
Sbjct: 371 QMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGL--IPNTITYNTLVL 428
Query: 168 IYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDK----YEKLKK 218
+ G E+F +M GV P+V ++ + G L+K +EK++K
Sbjct: 429 GFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQK 483
Score = 31.6 bits (70), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/129 (18%), Positives = 60/129 (46%), Gaps = 1/129 (0%)
Query: 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWT 147
++T + L N+ W ++ + M+ + + T+ L++ ++G+L EA+EL+
Sbjct: 280 VVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYN 339
Query: 148 KIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKL 207
++ + I ++ +I + + ++F M G P++ S++ N++ K
Sbjct: 340 EMITRGI-APDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKA 398
Query: 208 GMLDKYEKL 216
+D +L
Sbjct: 399 KRVDDGMRL 407
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 38.1 bits (87), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 65/132 (49%), Gaps = 4/132 (3%)
Query: 89 ITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTK 148
+T ++ L ++ D +V K M+S G + TY +LL+ L +G+L++A E++
Sbjct: 436 VTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFD- 494
Query: 149 IFLDHLEGTPRIF-FDKMISIYYNRGMHEKMFEIFADMEELGVRPN-VSIVSMMGNAFQK 206
++ E I+ + MI G + +++F + GV+PN V+ +M+ K
Sbjct: 495 -YMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSK 553
Query: 207 LGMLDKYEKLKK 218
+ + Y LKK
Sbjct: 554 RLLQEAYALLKK 565
>sp|Q9M316|PP292_ARATH Pentatricopeptide repeat-containing protein At3g61520,
mitochondrial OS=Arabidopsis thaliana GN=At3g61520 PE=2
SV=1
Length = 766
Score = 38.1 bits (87), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 129 LLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEEL 188
L++ L + GRL EAEEL ++ L+ + ++ +I Y G E E+ + M+E
Sbjct: 376 LIDGLCKVGRLKEAEELLVRMKLEERCAPNAVTYNCLIDGYCRAGKLETAKEVVSRMKED 435
Query: 189 GVRPNVSIV-SMMGNAFQKLGM 209
++PNV V +++G + G+
Sbjct: 436 EIKPNVVTVNTIVGGMCRHHGL 457
Score = 35.8 bits (81), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 49/106 (46%)
Query: 89 ITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTK 148
IT + KD++ + ++ + M G T+ TY +++A G LDEA +L+
Sbjct: 582 ITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKD 641
Query: 149 IFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNV 194
+ L + ++ +I+ + G + + +M+ VRPNV
Sbjct: 642 MGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNV 687
>sp|Q9ZU27|PPR76_ARATH Pentatricopeptide repeat-containing protein At1g51965,
mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2
SV=1
Length = 650
Score = 38.1 bits (87), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 68/192 (35%), Gaps = 41/192 (21%)
Query: 70 EEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLL 129
+E G + I L ++ ++ L K + IQV M+ G TY LL
Sbjct: 287 DEAVGLFNEMITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLL 346
Query: 130 LNALAEDG---RLDEAEELWTKIF--------------LDHLEGTPRIFFD--------- 163
LN L +G RLD E+ + L H+ R+F D
Sbjct: 347 LNLLVAEGQLVRLDGVVEISKRYMTQGIYSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGE 406
Query: 164 -----KMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGML-------D 211
M+ G + E+ + + E GV V+ M F LG L D
Sbjct: 407 RDSYMSMLESLCGAGKTIEAIEMLSKIHEKGV---VTDTMMYNTVFSALGKLKQISHIHD 463
Query: 212 KYEKLKKKYPPP 223
+EK+KK P P
Sbjct: 464 LFEKMKKDGPSP 475
>sp|Q9FIB2|PP373_ARATH Putative pentatricopeptide repeat-containing protein At5g09950
OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1
Length = 995
Score = 38.1 bits (87), Expect = 0.093, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 129 LLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEE- 187
+++ A G+ +EA +L+ + LD + F ++S + G+ E+ F+ F M +
Sbjct: 691 MISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDS 750
Query: 188 LGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYP 221
G+ P + S M + + G LDK E +K P
Sbjct: 751 YGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMP 784
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 37.7 bits (86), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 66/139 (47%), Gaps = 3/139 (2%)
Query: 89 ITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTK 148
+T + +L + ++V +LS T+ TY +L+ A +G +DEA +L +
Sbjct: 194 VTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDE 253
Query: 149 IFLDHLEGTPRIF-FDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKL 207
+ L+ P +F ++ +I GM ++ FE+ ++E G P+V +++ A
Sbjct: 254 MLSRGLK--PDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQ 311
Query: 208 GMLDKYEKLKKKYPPPKWE 226
G ++ EKL K K +
Sbjct: 312 GKWEEGEKLMTKMFSEKCD 330
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 3/118 (2%)
Query: 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWT 147
++T + TL + + + + K M KG +Y L+ A +GRLD A E
Sbjct: 333 VVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLE 392
Query: 148 KIFLDHLEGTPRIF-FDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAF 204
+ D P I ++ +++ G ++ EIF + E+G PN S + M +A
Sbjct: 393 TMISDGC--LPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSAL 448
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 3/108 (2%)
Query: 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWT 147
+I+ L+ L N+ W+ ++ M S+ + TY +L+ L DG+++EA L
Sbjct: 298 VISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLK 357
Query: 148 KIFLDHLEGTPRIF-FDKMISIYYNRGMHEKMFEIFADMEELGVRPNV 194
+ L TP + +D +I+ + G + E M G P++
Sbjct: 358 LMKEKGL--TPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDI 403
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 65/132 (49%), Gaps = 4/132 (3%)
Query: 89 ITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTK 148
+T ++ L ++ D +V K M+S G + TY +LL+ L +G+L++A E++
Sbjct: 361 VTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFD- 419
Query: 149 IFLDHLEGTPRIF-FDKMISIYYNRGMHEKMFEIFADMEELGVRPN-VSIVSMMGNAFQK 206
++ E I+ + MI G + +++F + GV+PN V+ +M+ K
Sbjct: 420 -YMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSK 478
Query: 207 LGMLDKYEKLKK 218
+ + Y LKK
Sbjct: 479 RLLQEAYALLKK 490
Score = 37.0 bits (84), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Query: 108 IQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMIS 167
+ + M+ +G + TY +++N L + G +D A L K+ +E IF + S
Sbjct: 135 VALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDS 194
Query: 168 IYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLG 208
+ R + + + +F +ME G+RPNV S + + G
Sbjct: 195 LCKYRHVDDAL-NLFKEMETKGIRPNVVTYSSLISCLCSYG 234
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 89 ITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTK 148
+T ++ L D ++ K M+S G + TY LL+ L ++G+L++A ++
Sbjct: 432 VTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFE- 490
Query: 149 IFLDHLEGTPRIF-FDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKL 207
+L + P I+ ++ MI G E +++F ++ GV+P+V + M + F +
Sbjct: 491 -YLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRK 549
Query: 208 G 208
G
Sbjct: 550 G 550
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 6/124 (4%)
Query: 109 QVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISI 168
Q+ ++M+SK + TY L+ + R++E E++ ++ L G + ++ +I
Sbjct: 382 QMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNT-VTYNILIQG 440
Query: 169 YYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDK----YEKLKK-KYPPP 223
+ G + EIF +M GV PN+ + + + K G L+K +E L++ K P
Sbjct: 441 LFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPT 500
Query: 224 KWEY 227
+ Y
Sbjct: 501 IYTY 504
Score = 31.2 bits (69), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 122 TMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIF-FDKMISIYYNRGMHEKMFE 180
T+ TY +++ + + G++++ +L+ + L ++ P + ++ MIS + +G E+
Sbjct: 500 TIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVK--PDVVAYNTMISGFCRKGSKEEADA 557
Query: 181 IFADMEELGVRPN 193
+F +M+E G PN
Sbjct: 558 LFKEMKEDGTLPN 570
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 62/138 (44%), Gaps = 1/138 (0%)
Query: 89 ITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTK 148
IT + E + IQ+ M+SKG + T+ +L+N + R+D+ EL+ +
Sbjct: 369 ITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFRE 428
Query: 149 IFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLG 208
+ L + + ++ ++ + G E ++F +M VRP++ ++ + G
Sbjct: 429 MSLRGVIANT-VTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNG 487
Query: 209 MLDKYEKLKKKYPPPKWE 226
L+K ++ K K E
Sbjct: 488 ELEKALEIFGKIEKSKME 505
Score = 36.6 bits (83), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 126 YFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADM 185
Y ++++ L +DG LD A L+ ++ + + I ++ +I + N G + ++ DM
Sbjct: 266 YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADI-ITYNTLIGGFCNAGRWDDGAKLLRDM 324
Query: 186 EELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219
+ + PNV S++ ++F K G L + ++L K+
Sbjct: 325 IKRKISPNVVTFSVLIDSFVKEGKLREADQLLKE 358
>sp|Q6NKW7|PP164_ARATH Pentatricopeptide repeat-containing protein At2g19280
OS=Arabidopsis thaliana GN=At2g19280 PE=2 SV=2
Length = 693
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/209 (19%), Positives = 86/209 (41%), Gaps = 1/209 (0%)
Query: 84 LEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAE 143
L+ ++T + ++ ++ M S G + TY +L++++ G +DEA
Sbjct: 474 LKLDVVTYNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYIDEAN 533
Query: 144 ELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNA 203
E+ +++ + F D +I + RG ++ F ++ M +L ++P+V S + +
Sbjct: 534 EIISELIRRGFVPSTLAFTD-VIGGFSKRGDFQEAFILWFYMADLRMKPDVVTCSALLHG 592
Query: 204 FQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSATEGKTNEVETTKNPN 263
+ K ++K L K + + + +++ A E V+ PN
Sbjct: 593 YCKAQRMEKAIVLFNKLLDAGLKPDVVLYNTLIHGYCSVGDIEKACELIGLMVQRGMLPN 652
Query: 264 ESSEEPEAAANLNESLEETEANTKELLEE 292
ES+ + +E + LLEE
Sbjct: 653 ESTHHALVLGLEGKRFVNSETHASMLLEE 681
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 61/120 (50%), Gaps = 5/120 (4%)
Query: 89 ITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTK 148
I +K + E EK + +I++T++ G + Y L++ + G +++A++L+ +
Sbjct: 168 ILIKGCCEAGEIEKSFDLLIELTEF----GFSPNVVIYTTLIDGCCKKGEIEKAKDLFFE 223
Query: 149 IFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLG 208
+ L R + +I+ + G+ ++ FE++ M+E GV PN+ + + N K G
Sbjct: 224 MGKLGLVANERTY-TVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDG 282
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 49/107 (45%), Gaps = 1/107 (0%)
Query: 89 ITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTK 148
+T + T + ++ IQ+ M G + TY +L++ G+++EA L+
Sbjct: 409 VTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKS 468
Query: 149 IFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVS 195
+ + E + ++ MI Y G + ++ +MEE + PNV+
Sbjct: 469 MVEKNCE-PNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVA 514
>sp|Q8GYM2|PP393_ARATH Pentatricopeptide repeat-containing protein At5g18950
OS=Arabidopsis thaliana GN=At5g18950 PE=2 SV=2
Length = 483
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 1/106 (0%)
Query: 114 MLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRG 173
M+ KG Y ++++ + G + E + ++ + GT + + MI + + G
Sbjct: 344 MIKKGMRPNEFAYNVMIHGHFKRGEISLVEAFYNEMLRNGYGGT-MLSCNTMIKGFCSHG 402
Query: 174 MHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219
++ FEIF +M E GV PN + + F K ++K KL K+
Sbjct: 403 KSDEAFEIFKNMSETGVTPNAITYNALIKGFCKENKVEKGLKLYKE 448
>sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720
OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1
Length = 485
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 109 QVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISI 168
Q+ M++KG + TY L+N + R+DE +L+ ++ L G I ++ +I
Sbjct: 300 QMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDT-ITYNTIIQG 358
Query: 169 YYNRGMHEKMFEIFADMEELGVRPNVSIVSMM 200
Y+ G + EIF+ M+ RPN+ S++
Sbjct: 359 YFQAGRPDAAQEIFSRMDS---RPNIRTYSIL 387
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.132 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,008,893
Number of Sequences: 539616
Number of extensions: 4818380
Number of successful extensions: 15431
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 191
Number of HSP's that attempted gapping in prelim test: 14815
Number of HSP's gapped (non-prelim): 769
length of query: 310
length of database: 191,569,459
effective HSP length: 117
effective length of query: 193
effective length of database: 128,434,387
effective search space: 24787836691
effective search space used: 24787836691
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)