Query 021583
Match_columns 310
No_of_seqs 165 out of 1856
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 04:07:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021583.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021583hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.8E-36 3.9E-41 301.0 26.7 280 22-302 452-789 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 2.7E-35 5.9E-40 292.7 28.7 262 40-302 435-754 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 1.9E-32 4.1E-37 267.6 20.0 229 39-284 256-506 (697)
4 PLN03081 pentatricopeptide (PP 100.0 8.2E-32 1.8E-36 263.2 23.2 259 39-302 155-462 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 2.6E-30 5.5E-35 258.1 22.4 246 28-279 309-632 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 6.1E-30 1.3E-34 255.4 21.2 261 19-302 133-424 (857)
7 PF13041 PPR_2: PPR repeat fam 99.5 2.5E-14 5.5E-19 90.9 6.6 50 157-206 1-50 (50)
8 PF13041 PPR_2: PPR repeat fam 99.5 3.7E-14 8E-19 90.2 6.7 50 86-135 1-50 (50)
9 PRK11788 tetratricopeptide rep 99.5 2.2E-11 4.7E-16 111.4 22.2 196 67-279 121-322 (389)
10 PRK11788 tetratricopeptide rep 99.3 2E-10 4.2E-15 105.0 19.7 189 67-271 155-352 (389)
11 KOG4422 Uncharacterized conser 99.1 1.4E-08 3.1E-13 89.8 18.2 123 85-212 204-330 (625)
12 TIGR02917 PEP_TPR_lipo putativ 99.1 5.2E-08 1.1E-12 97.6 23.9 205 67-278 581-810 (899)
13 PF12854 PPR_1: PPR repeat 99.1 2.6E-10 5.6E-15 65.7 4.2 33 118-150 2-34 (34)
14 KOG4422 Uncharacterized conser 99.1 1.6E-08 3.5E-13 89.4 17.2 217 69-296 131-381 (625)
15 TIGR02917 PEP_TPR_lipo putativ 99.0 6.6E-08 1.4E-12 96.8 22.3 191 68-266 616-832 (899)
16 KOG4318 Bicoid mRNA stability 99.0 6.8E-09 1.5E-13 98.8 11.7 198 74-283 11-282 (1088)
17 PF12854 PPR_1: PPR repeat 98.9 2.6E-09 5.7E-14 61.5 4.0 34 82-115 1-34 (34)
18 TIGR02521 type_IV_pilW type IV 98.8 2.1E-06 4.6E-11 71.6 21.9 144 73-219 51-194 (234)
19 KOG4318 Bicoid mRNA stability 98.8 1.9E-08 4.2E-13 95.8 7.5 169 109-279 11-246 (1088)
20 TIGR02521 type_IV_pilW type IV 98.7 8E-06 1.7E-10 68.1 21.8 166 87-266 30-198 (234)
21 TIGR00756 PPR pentatricopeptid 98.6 5.8E-08 1.3E-12 56.1 4.4 34 161-194 2-35 (35)
22 TIGR00990 3a0801s09 mitochondr 98.6 3.5E-05 7.7E-10 74.9 24.8 146 67-219 345-492 (615)
23 PRK12370 invasion protein regu 98.6 1.5E-05 3.4E-10 76.4 21.8 149 70-223 321-470 (553)
24 PRK15174 Vi polysaccharide exp 98.5 5.9E-05 1.3E-09 73.8 25.2 146 69-219 193-343 (656)
25 PRK15174 Vi polysaccharide exp 98.5 0.00014 3.1E-09 71.1 27.1 148 67-219 90-237 (656)
26 TIGR00990 3a0801s09 mitochondr 98.5 5.6E-05 1.2E-09 73.6 24.2 181 68-265 309-495 (615)
27 PF13429 TPR_15: Tetratricopep 98.5 1E-06 2.2E-11 77.0 10.5 180 68-263 92-274 (280)
28 PF13812 PPR_3: Pentatricopept 98.5 2.8E-07 6.1E-12 52.9 4.3 33 160-192 2-34 (34)
29 TIGR00756 PPR pentatricopeptid 98.4 7.6E-07 1.6E-11 51.2 4.6 33 90-122 2-34 (35)
30 PF01535 PPR: PPR repeat; Int 98.3 5.5E-07 1.2E-11 50.5 3.3 29 161-189 2-30 (31)
31 PF13812 PPR_3: Pentatricopept 98.3 8.9E-07 1.9E-11 50.8 4.1 32 90-121 3-34 (34)
32 PF13429 TPR_15: Tetratricopep 98.3 1.2E-05 2.5E-10 70.3 12.9 148 67-219 124-273 (280)
33 KOG4626 O-linked N-acetylgluco 98.3 9.7E-05 2.1E-09 68.9 18.9 177 83-265 280-484 (966)
34 COG2956 Predicted N-acetylgluc 98.3 0.00015 3.2E-09 62.6 18.3 154 63-219 45-205 (389)
35 KOG1840 Kinesin light chain [C 98.3 3.9E-05 8.4E-10 71.6 15.9 216 39-264 237-477 (508)
36 PRK12370 invasion protein regu 98.3 0.00045 9.7E-09 66.4 23.1 179 70-265 278-469 (553)
37 PRK10049 pgaA outer membrane p 98.2 0.00034 7.3E-09 69.8 22.7 186 67-266 251-456 (765)
38 PRK09782 bacteriophage N4 rece 98.2 0.00073 1.6E-08 68.6 25.1 141 71-219 494-634 (987)
39 PF01535 PPR: PPR repeat; Int 98.2 1.1E-06 2.5E-11 49.1 3.1 30 125-154 2-31 (31)
40 COG2956 Predicted N-acetylgluc 98.2 0.00022 4.8E-09 61.6 17.5 204 68-286 122-329 (389)
41 PRK10747 putative protoheme IX 98.2 0.00046 1E-08 63.5 21.2 210 64-279 129-368 (398)
42 PRK09782 bacteriophage N4 rece 98.2 0.00036 7.7E-09 70.8 21.9 178 67-266 523-706 (987)
43 PRK10747 putative protoheme IX 98.2 0.0023 4.9E-08 58.9 24.9 193 58-266 88-292 (398)
44 PF08579 RPM2: Mitochondrial r 98.1 7.9E-05 1.7E-09 54.5 11.5 80 127-206 29-116 (120)
45 KOG4626 O-linked N-acetylgluco 98.1 5.9E-05 1.3E-09 70.3 13.1 146 67-219 300-447 (966)
46 PF10037 MRP-S27: Mitochondria 98.1 0.00014 3E-09 66.5 15.0 127 80-207 58-186 (429)
47 TIGR00540 hemY_coli hemY prote 98.1 0.0013 2.9E-08 60.7 21.9 179 95-276 160-374 (409)
48 COG3071 HemY Uncharacterized e 98.1 0.0036 7.9E-08 55.6 23.1 215 58-279 88-368 (400)
49 TIGR00540 hemY_coli hemY prote 98.1 0.0035 7.6E-08 57.9 24.3 187 63-266 94-292 (409)
50 KOG1840 Kinesin light chain [C 98.1 0.00049 1.1E-08 64.4 18.2 207 88-297 199-439 (508)
51 TIGR03302 OM_YfiO outer membra 98.0 0.0011 2.3E-08 56.2 18.5 147 72-220 52-229 (235)
52 PRK11447 cellulose synthase su 98.0 0.0027 5.8E-08 66.4 24.9 146 67-218 283-442 (1157)
53 PRK14574 hmsH outer membrane p 98.0 0.0013 2.7E-08 65.6 20.9 186 68-265 307-512 (822)
54 PRK14574 hmsH outer membrane p 97.9 0.0035 7.5E-08 62.6 22.7 197 70-279 268-490 (822)
55 PF08579 RPM2: Mitochondrial r 97.9 0.00035 7.5E-09 51.2 11.6 81 90-171 27-116 (120)
56 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00082 1.8E-08 61.1 16.4 123 90-220 171-294 (395)
57 PRK11447 cellulose synthase su 97.9 0.0012 2.6E-08 69.0 19.6 132 85-219 600-736 (1157)
58 TIGR02552 LcrH_SycD type III s 97.8 0.0018 3.9E-08 49.6 15.4 106 88-198 17-122 (135)
59 KOG1126 DNA-binding cell divis 97.8 0.0008 1.7E-08 63.2 15.3 175 32-217 413-614 (638)
60 PRK11189 lipoprotein NlpI; Pro 97.8 0.0043 9.4E-08 54.7 19.5 126 89-219 65-190 (296)
61 PRK15359 type III secretion sy 97.8 0.0013 2.8E-08 51.4 14.4 100 90-194 26-125 (144)
62 COG3063 PilF Tfp pilus assembl 97.8 0.0034 7.3E-08 52.0 16.8 176 73-263 55-233 (250)
63 PF06239 ECSIT: Evolutionarily 97.8 0.00053 1.2E-08 56.3 12.1 72 67-138 66-153 (228)
64 COG3063 PilF Tfp pilus assembl 97.8 0.011 2.4E-07 49.0 19.4 173 89-279 36-214 (250)
65 PF04733 Coatomer_E: Coatomer 97.8 0.00015 3.3E-09 63.5 9.3 152 94-266 108-265 (290)
66 PRK10049 pgaA outer membrane p 97.8 0.0051 1.1E-07 61.5 21.1 151 63-220 25-176 (765)
67 COG5010 TadD Flp pilus assembl 97.7 0.0032 6.9E-08 53.0 15.9 129 86-218 98-226 (257)
68 PF06239 ECSIT: Evolutionarily 97.7 0.00025 5.4E-09 58.2 9.2 107 85-211 44-155 (228)
69 cd05804 StaR_like StaR_like; a 97.7 0.0044 9.5E-08 55.8 18.5 152 63-220 53-212 (355)
70 KOG1126 DNA-binding cell divis 97.7 0.0011 2.3E-08 62.4 14.3 174 86-279 419-597 (638)
71 PRK11189 lipoprotein NlpI; Pro 97.7 0.017 3.8E-07 50.8 21.7 196 67-279 78-277 (296)
72 PF09976 TPR_21: Tetratricopep 97.7 0.0063 1.4E-07 47.5 16.5 126 89-219 13-143 (145)
73 PF10037 MRP-S27: Mitochondria 97.7 0.00072 1.6E-08 61.9 12.5 103 69-172 82-186 (429)
74 PRK10370 formate-dependent nit 97.7 0.0066 1.4E-07 50.1 17.2 121 73-198 59-182 (198)
75 PRK15359 type III secretion sy 97.7 0.0018 3.8E-08 50.6 12.8 91 126-219 27-117 (144)
76 PRK15179 Vi polysaccharide bio 97.6 0.006 1.3E-07 59.8 18.7 131 83-219 81-213 (694)
77 KOG1155 Anaphase-promoting com 97.6 0.0055 1.2E-07 55.6 16.9 141 77-219 251-457 (559)
78 cd00189 TPR Tetratricopeptide 97.6 0.0018 3.8E-08 44.9 11.6 92 92-186 4-95 (100)
79 KOG1129 TPR repeat-containing 97.6 0.0077 1.7E-07 52.5 16.6 168 34-219 215-383 (478)
80 TIGR02552 LcrH_SycD type III s 97.6 0.0023 5E-08 49.0 12.4 95 122-219 16-110 (135)
81 COG3071 HemY Uncharacterized e 97.6 0.02 4.4E-07 51.0 19.1 180 71-265 171-389 (400)
82 cd00189 TPR Tetratricopeptide 97.5 0.0029 6.3E-08 43.8 11.1 92 125-219 2-93 (100)
83 TIGR03302 OM_YfiO outer membra 97.5 0.019 4.1E-07 48.5 17.8 166 87-265 32-231 (235)
84 KOG0547 Translocase of outer m 97.5 0.0052 1.1E-07 56.2 14.4 144 71-219 412-562 (606)
85 PRK10370 formate-dependent nit 97.4 0.011 2.4E-07 48.8 15.1 115 101-219 52-169 (198)
86 PF04733 Coatomer_E: Coatomer 97.4 0.0067 1.4E-07 53.2 14.1 128 86-220 129-262 (290)
87 PF05843 Suf: Suppressor of fo 97.4 0.0077 1.7E-07 52.6 14.4 126 89-219 2-132 (280)
88 KOG1155 Anaphase-promoting com 97.4 0.057 1.2E-06 49.3 19.8 188 67-265 344-535 (559)
89 TIGR02795 tol_pal_ybgF tol-pal 97.4 0.0085 1.8E-07 44.4 12.7 100 90-189 4-106 (119)
90 KOG1129 TPR repeat-containing 97.3 0.0031 6.7E-08 54.8 10.8 184 67-265 270-457 (478)
91 COG4783 Putative Zn-dependent 97.3 0.015 3.2E-07 53.2 15.3 144 90-264 309-452 (484)
92 PF12895 Apc3: Anaphase-promot 97.3 0.00094 2E-08 46.8 6.0 82 136-219 2-83 (84)
93 PF09976 TPR_21: Tetratricopep 97.2 0.025 5.4E-07 44.1 14.6 126 124-262 13-143 (145)
94 COG5010 TadD Flp pilus assembl 97.2 0.04 8.7E-07 46.5 15.9 170 82-267 60-232 (257)
95 PF05843 Suf: Suppressor of fo 97.2 0.0058 1.2E-07 53.4 11.5 132 123-265 1-135 (280)
96 KOG2002 TPR-containing nuclear 97.2 0.012 2.7E-07 57.8 14.2 196 71-279 548-758 (1018)
97 PF12569 NARP1: NMDA receptor- 97.2 0.13 2.8E-06 48.8 20.9 126 90-219 196-330 (517)
98 cd05804 StaR_like StaR_like; a 97.1 0.032 6.9E-07 50.2 16.3 157 95-265 50-214 (355)
99 PRK02603 photosystem I assembl 97.1 0.045 9.7E-07 44.0 15.5 85 88-174 35-121 (172)
100 KOG2003 TPR repeat-containing 97.1 0.16 3.6E-06 46.3 19.9 174 100-279 502-701 (840)
101 CHL00033 ycf3 photosystem I as 97.1 0.022 4.7E-07 45.6 13.5 95 88-184 35-138 (168)
102 TIGR02795 tol_pal_ybgF tol-pal 97.1 0.018 4E-07 42.5 12.3 97 124-220 3-102 (119)
103 KOG2076 RNA polymerase III tra 97.1 0.099 2.1E-06 51.3 19.0 183 70-264 297-510 (895)
104 PF09295 ChAPs: ChAPs (Chs5p-A 97.1 0.034 7.4E-07 50.7 15.4 114 67-187 183-296 (395)
105 KOG2003 TPR repeat-containing 97.1 0.087 1.9E-06 48.0 17.5 128 88-220 558-686 (840)
106 PF12569 NARP1: NMDA receptor- 97.0 0.086 1.9E-06 50.0 18.4 181 72-263 130-331 (517)
107 KOG3081 Vesicle coat complex C 97.0 0.079 1.7E-06 45.0 16.0 136 73-219 93-232 (299)
108 COG4783 Putative Zn-dependent 97.0 0.22 4.7E-06 45.8 20.0 127 55-186 307-435 (484)
109 KOG2076 RNA polymerase III tra 97.0 0.25 5.4E-06 48.6 21.2 164 40-219 137-305 (895)
110 KOG0547 Translocase of outer m 97.0 0.17 3.8E-06 46.6 18.9 192 63-265 336-531 (606)
111 KOG1070 rRNA processing protei 97.0 0.14 3E-06 52.7 19.7 168 90-274 1499-1671(1710)
112 PLN03088 SGT1, suppressor of 97.0 0.03 6.6E-07 50.7 14.3 102 95-201 9-110 (356)
113 PRK15179 Vi polysaccharide bio 96.9 0.079 1.7E-06 52.1 17.8 144 119-279 82-229 (694)
114 PRK10153 DNA-binding transcrip 96.9 0.12 2.6E-06 49.1 18.6 147 82-232 331-494 (517)
115 PF12895 Apc3: Anaphase-promot 96.9 0.0035 7.6E-08 43.9 6.3 81 101-184 2-83 (84)
116 PF12921 ATP13: Mitochondrial 96.9 0.022 4.9E-07 43.2 10.7 84 87-171 1-100 (126)
117 KOG1914 mRNA cleavage and poly 96.8 0.1 2.2E-06 48.6 16.3 146 69-219 347-497 (656)
118 KOG1173 Anaphase-promoting com 96.8 0.053 1.1E-06 50.6 14.1 132 96-229 388-527 (611)
119 KOG3941 Intermediate in Toll s 96.8 0.0059 1.3E-07 52.1 7.2 84 68-151 87-187 (406)
120 CHL00033 ycf3 photosystem I as 96.7 0.048 1E-06 43.6 12.4 113 104-218 15-137 (168)
121 PF14559 TPR_19: Tetratricopep 96.7 0.0085 1.8E-07 39.8 6.6 51 135-187 3-53 (68)
122 PF12921 ATP13: Mitochondrial 96.7 0.036 7.9E-07 42.1 10.7 86 122-207 1-101 (126)
123 KOG1914 mRNA cleavage and poly 96.7 0.17 3.6E-06 47.2 16.5 150 104-264 347-499 (656)
124 KOG3081 Vesicle coat complex C 96.6 0.082 1.8E-06 44.9 13.1 110 95-210 144-257 (299)
125 KOG3941 Intermediate in Toll s 96.6 0.031 6.8E-07 47.8 10.5 107 85-211 64-175 (406)
126 PF03704 BTAD: Bacterial trans 96.6 0.024 5.1E-07 44.1 9.4 72 124-197 63-139 (146)
127 PF12688 TPR_5: Tetratrico pep 96.6 0.21 4.5E-06 37.6 14.6 107 95-205 8-117 (120)
128 PF14559 TPR_19: Tetratricopep 96.5 0.016 3.4E-07 38.5 7.1 64 99-166 2-65 (68)
129 KOG1128 Uncharacterized conser 96.4 0.12 2.5E-06 49.8 14.3 160 88-265 424-615 (777)
130 KOG2002 TPR-containing nuclear 96.4 0.03 6.6E-07 55.2 10.5 114 101-217 625-739 (1018)
131 PLN03088 SGT1, suppressor of 96.4 0.061 1.3E-06 48.7 12.1 86 130-219 9-95 (356)
132 COG4700 Uncharacterized protei 96.3 0.43 9.3E-06 38.6 15.6 133 81-215 82-214 (251)
133 PRK02603 photosystem I assembl 96.3 0.19 4.1E-06 40.3 13.1 86 122-209 34-121 (172)
134 PRK15363 pathogenicity island 96.2 0.14 3E-06 40.3 11.5 86 131-219 43-128 (157)
135 KOG1070 rRNA processing protei 96.2 0.35 7.6E-06 50.0 16.6 128 89-219 1531-1659(1710)
136 PF13432 TPR_16: Tetratricopep 96.1 0.049 1.1E-06 35.7 7.7 55 131-187 5-59 (65)
137 PF12688 TPR_5: Tetratrico pep 96.1 0.21 4.5E-06 37.6 11.8 87 130-218 8-99 (120)
138 PRK10803 tol-pal system protei 96.1 0.18 3.8E-06 43.6 12.8 97 89-187 144-245 (263)
139 KOG3060 Uncharacterized conser 96.1 0.74 1.6E-05 39.1 18.2 147 69-220 28-180 (289)
140 PRK14720 transcript cleavage f 96.1 0.79 1.7E-05 46.2 18.7 130 83-219 25-174 (906)
141 KOG3616 Selective LIM binding 96.1 0.047 1E-06 52.6 9.7 132 69-223 748-879 (1636)
142 KOG1125 TPR repeat-containing 96.0 0.067 1.4E-06 50.0 10.2 112 103-218 409-522 (579)
143 KOG1173 Anaphase-promoting com 96.0 0.24 5.2E-06 46.4 13.4 134 68-207 395-535 (611)
144 PF13432 TPR_16: Tetratricopep 95.9 0.049 1.1E-06 35.7 6.9 58 94-152 3-60 (65)
145 PF14938 SNAP: Soluble NSF att 95.9 0.18 4E-06 44.0 12.3 164 90-262 77-259 (282)
146 KOG2376 Signal recognition par 95.9 1.1 2.4E-05 42.3 17.3 134 88-225 376-522 (652)
147 PF13414 TPR_11: TPR repeat; P 95.8 0.098 2.1E-06 34.7 8.1 61 123-185 3-64 (69)
148 PF04840 Vps16_C: Vps16, C-ter 95.8 0.13 2.9E-06 45.7 10.9 108 88-216 177-284 (319)
149 KOG2376 Signal recognition par 95.7 0.3 6.5E-06 46.0 13.0 114 93-219 17-135 (652)
150 PF13424 TPR_12: Tetratricopep 95.6 0.077 1.7E-06 36.2 7.1 60 125-184 7-71 (78)
151 PRK10866 outer membrane biogen 95.6 1.3 2.7E-05 37.9 16.6 159 58-219 36-237 (243)
152 PF03704 BTAD: Bacterial trans 95.6 0.21 4.4E-06 38.8 10.3 66 89-155 63-133 (146)
153 KOG1915 Cell cycle control pro 95.6 0.54 1.2E-05 43.4 13.8 105 82-187 431-535 (677)
154 KOG0553 TPR repeat-containing 95.6 0.17 3.6E-06 43.8 10.1 92 133-228 91-186 (304)
155 PF13424 TPR_12: Tetratricopep 95.5 0.037 8E-07 37.8 5.2 64 88-151 5-74 (78)
156 PF13414 TPR_11: TPR repeat; P 95.4 0.12 2.6E-06 34.2 7.4 65 87-152 2-67 (69)
157 PF13170 DUF4003: Protein of u 95.4 0.59 1.3E-05 41.1 13.4 132 69-202 78-225 (297)
158 KOG1915 Cell cycle control pro 95.4 1.8 3.9E-05 40.1 16.5 141 71-218 91-231 (677)
159 PF14938 SNAP: Soluble NSF att 95.4 0.17 3.7E-06 44.2 10.1 200 89-297 36-264 (282)
160 smart00299 CLH Clathrin heavy 95.3 0.97 2.1E-05 34.7 13.4 110 92-219 11-121 (140)
161 PRK15363 pathogenicity island 95.0 1.4 3E-05 34.7 13.1 95 90-187 37-131 (157)
162 COG3629 DnrI DNA-binding trans 94.8 0.48 1E-05 41.1 10.8 80 123-204 153-237 (280)
163 KOG3616 Selective LIM binding 94.8 0.43 9.3E-06 46.3 11.3 106 99-218 743-848 (1636)
164 PF10300 DUF3808: Protein of u 94.8 3.1 6.7E-05 39.2 17.2 151 67-220 202-373 (468)
165 PLN03098 LPA1 LOW PSII ACCUMUL 94.7 0.8 1.7E-05 42.2 12.6 66 85-152 72-141 (453)
166 KOG2796 Uncharacterized conser 94.7 1.1 2.5E-05 38.2 12.4 132 90-223 179-315 (366)
167 KOG0985 Vesicle coat protein c 94.7 2.8 6E-05 42.5 16.6 85 124-217 1105-1189(1666)
168 KOG2053 Mitochondrial inherita 94.7 0.83 1.8E-05 45.2 13.1 105 100-211 21-127 (932)
169 PF13371 TPR_9: Tetratricopept 94.7 0.19 4.1E-06 33.6 6.7 55 131-187 3-57 (73)
170 PRK10803 tol-pal system protei 94.6 1.1 2.3E-05 38.8 12.7 98 123-220 143-243 (263)
171 PF13371 TPR_9: Tetratricopept 94.6 0.28 6E-06 32.8 7.4 59 95-154 2-60 (73)
172 KOG3785 Uncharacterized conser 94.4 1.1 2.5E-05 39.8 12.1 122 92-219 363-486 (557)
173 PRK04841 transcriptional regul 94.3 3.4 7.4E-05 42.2 17.8 154 66-219 465-637 (903)
174 KOG1128 Uncharacterized conser 94.3 0.48 1E-05 45.8 10.4 144 71-219 442-612 (777)
175 PLN03098 LPA1 LOW PSII ACCUMUL 94.3 0.91 2E-05 41.9 11.8 66 121-188 73-141 (453)
176 PRK14720 transcript cleavage f 94.3 1.2 2.6E-05 45.0 13.6 127 88-219 116-248 (906)
177 PF13170 DUF4003: Protein of u 94.2 0.67 1.5E-05 40.8 10.7 166 104-279 78-263 (297)
178 PLN02789 farnesyltranstransfer 94.2 3.9 8.4E-05 36.5 17.4 145 58-207 42-189 (320)
179 KOG1156 N-terminal acetyltrans 93.9 2.7 5.9E-05 40.3 14.3 129 85-219 366-507 (700)
180 KOG2796 Uncharacterized conser 93.8 1.6 3.4E-05 37.4 11.6 127 73-203 197-328 (366)
181 KOG0553 TPR repeat-containing 93.8 1.7 3.7E-05 37.8 12.0 98 97-199 90-187 (304)
182 KOG2047 mRNA splicing factor [ 93.8 6.7 0.00014 37.9 18.4 55 240-296 548-608 (835)
183 PF10602 RPN7: 26S proteasome 93.6 1.7 3.6E-05 35.2 11.3 101 123-224 36-143 (177)
184 PLN02789 farnesyltranstransfer 93.6 5.1 0.00011 35.7 15.9 125 91-220 40-168 (320)
185 PRK10153 DNA-binding transcrip 93.6 5.2 0.00011 38.2 16.1 121 70-197 359-489 (517)
186 KOG3617 WD40 and TPR repeat-co 93.4 1.9 4.1E-05 42.7 12.7 87 128-218 831-936 (1416)
187 KOG1125 TPR repeat-containing 93.4 2.8 6.1E-05 39.6 13.4 141 71-216 412-564 (579)
188 KOG3617 WD40 and TPR repeat-co 93.2 2.2 4.7E-05 42.3 12.8 49 165-219 944-992 (1416)
189 KOG2114 Vacuolar assembly/sort 93.1 1.3 2.7E-05 43.7 11.1 129 130-279 404-532 (933)
190 KOG3785 Uncharacterized conser 93.1 4.8 0.0001 36.0 13.6 115 104-220 339-454 (557)
191 PF04840 Vps16_C: Vps16, C-ter 93.0 3.8 8.3E-05 36.5 13.5 87 124-221 178-264 (319)
192 KOG4340 Uncharacterized conser 92.7 2.8 6E-05 36.6 11.6 181 67-260 158-369 (459)
193 PRK04841 transcriptional regul 92.7 8.1 0.00018 39.5 17.3 131 88-219 612-756 (903)
194 KOG2047 mRNA splicing factor [ 92.6 7.5 0.00016 37.6 15.1 146 55-205 122-292 (835)
195 PRK15331 chaperone protein Sic 92.5 1.2 2.7E-05 35.2 8.6 81 135-218 49-129 (165)
196 PF13762 MNE1: Mitochondrial s 92.2 3.4 7.3E-05 32.1 10.5 97 116-212 30-133 (145)
197 PF13512 TPR_18: Tetratricopep 91.8 3.4 7.4E-05 32.0 10.1 87 88-176 11-99 (142)
198 PF10602 RPN7: 26S proteasome 91.8 2.6 5.5E-05 34.1 10.0 102 160-264 37-140 (177)
199 COG5107 RNA14 Pre-mRNA 3'-end 91.6 4.1 8.8E-05 37.7 11.7 124 88-216 397-524 (660)
200 smart00299 CLH Clathrin heavy 91.5 5.1 0.00011 30.6 15.2 116 67-206 21-137 (140)
201 KOG1127 TPR repeat-containing 91.3 5.3 0.00012 40.5 13.0 126 89-219 493-621 (1238)
202 PF02284 COX5A: Cytochrome c o 91.2 2 4.4E-05 31.0 7.6 56 73-130 30-86 (108)
203 COG4235 Cytochrome c biogenesi 90.9 10 0.00022 33.1 15.6 102 85-189 153-257 (287)
204 cd00923 Cyt_c_Oxidase_Va Cytoc 90.6 2.3 5E-05 30.4 7.4 58 72-131 26-84 (103)
205 PF13176 TPR_7: Tetratricopept 90.2 0.79 1.7E-05 26.1 4.1 23 126-148 2-24 (36)
206 KOG1174 Anaphase-promoting com 90.2 15 0.00032 33.8 17.5 50 96-146 342-391 (564)
207 KOG4570 Uncharacterized conser 89.8 5 0.00011 35.3 10.2 104 81-187 57-163 (418)
208 PF13176 TPR_7: Tetratricopept 89.4 1 2.2E-05 25.6 4.2 26 161-186 1-26 (36)
209 KOG1174 Anaphase-promoting com 89.3 18 0.00038 33.3 18.3 86 95-183 307-392 (564)
210 KOG4570 Uncharacterized conser 88.9 3.5 7.5E-05 36.3 8.6 101 52-154 61-166 (418)
211 PF13428 TPR_14: Tetratricopep 88.2 2.5 5.4E-05 25.2 5.5 27 126-152 4-30 (44)
212 COG3629 DnrI DNA-binding trans 87.9 4.3 9.4E-05 35.3 8.8 79 88-168 153-236 (280)
213 KOG1156 N-terminal acetyltrans 87.8 28 0.0006 33.8 17.6 179 87-279 74-259 (700)
214 PF04053 Coatomer_WDAD: Coatom 87.8 23 0.0005 33.1 14.1 116 88-219 295-427 (443)
215 PF13281 DUF4071: Domain of un 87.7 21 0.00047 32.4 17.8 162 58-219 144-330 (374)
216 PF13525 YfiO: Outer membrane 87.6 14 0.00031 30.3 12.6 143 67-214 19-198 (203)
217 PF13374 TPR_10: Tetratricopep 87.6 1.7 3.6E-05 25.1 4.5 25 125-149 4-28 (42)
218 KOG0985 Vesicle coat protein c 87.3 22 0.00047 36.6 13.9 87 88-183 1104-1190(1666)
219 COG5107 RNA14 Pre-mRNA 3'-end 87.2 25 0.00055 32.7 13.6 131 69-206 413-547 (660)
220 KOG2053 Mitochondrial inherita 87.2 3.7 8E-05 40.9 8.7 83 132-219 18-102 (932)
221 KOG4162 Predicted calmodulin-b 87.0 34 0.00073 33.9 14.7 125 90-219 652-779 (799)
222 KOG2280 Vacuolar assembly/sort 86.7 11 0.00024 37.0 11.4 116 82-217 678-793 (829)
223 PF10579 Rapsyn_N: Rapsyn N-te 86.6 2.6 5.7E-05 28.9 5.3 51 130-181 14-65 (80)
224 PF09205 DUF1955: Domain of un 86.5 8.1 0.00018 29.6 8.3 63 126-190 89-151 (161)
225 PF10300 DUF3808: Protein of u 86.2 21 0.00046 33.7 13.1 145 126-279 191-346 (468)
226 PF04184 ST7: ST7 protein; In 85.9 11 0.00023 35.4 10.5 76 129-205 265-342 (539)
227 KOG0495 HAT repeat protein [RN 85.9 37 0.00079 33.3 23.8 146 67-219 564-710 (913)
228 COG1729 Uncharacterized protei 85.3 12 0.00026 32.2 9.9 94 125-219 144-240 (262)
229 COG4235 Cytochrome c biogenesi 85.3 18 0.00039 31.5 11.1 97 120-220 153-253 (287)
230 PF09205 DUF1955: Domain of un 84.5 14 0.00031 28.3 8.8 66 88-154 86-151 (161)
231 KOG2610 Uncharacterized conser 83.9 25 0.00054 31.5 11.3 116 101-218 116-233 (491)
232 PF13374 TPR_10: Tetratricopep 83.6 3.5 7.6E-05 23.6 4.6 29 88-116 2-30 (42)
233 KOG4555 TPR repeat-containing 83.5 14 0.0003 28.3 8.4 52 133-186 53-104 (175)
234 KOG4340 Uncharacterized conser 83.4 31 0.00068 30.4 17.3 90 132-223 153-270 (459)
235 PF00637 Clathrin: Region in C 83.2 0.46 1E-05 36.6 0.6 83 129-219 13-95 (143)
236 PF04184 ST7: ST7 protein; In 83.2 42 0.00091 31.7 13.1 82 92-174 263-346 (539)
237 COG2178 Predicted RNA-binding 82.8 25 0.00053 28.8 10.8 96 91-187 32-149 (204)
238 KOG1538 Uncharacterized conser 82.8 13 0.00029 36.0 9.9 58 164-223 778-846 (1081)
239 KOG4555 TPR repeat-containing 82.5 20 0.00043 27.5 12.1 91 97-189 52-145 (175)
240 PRK15331 chaperone protein Sic 82.0 23 0.0005 28.2 9.6 91 94-187 43-133 (165)
241 TIGR02508 type_III_yscG type I 81.9 8.2 0.00018 27.9 6.3 82 174-270 20-101 (115)
242 KOG0543 FKBP-type peptidyl-pro 81.8 28 0.00062 31.7 11.2 97 88-187 257-354 (397)
243 KOG0495 HAT repeat protein [RN 81.6 56 0.0012 32.1 24.3 134 82-218 473-608 (913)
244 COG3898 Uncharacterized membra 81.6 43 0.00093 30.7 14.3 124 90-218 84-212 (531)
245 PF13929 mRNA_stabil: mRNA sta 81.5 36 0.00077 29.7 16.5 98 87-184 163-263 (292)
246 KOG1585 Protein required for f 81.2 32 0.0007 29.4 10.6 42 249-290 202-246 (308)
247 KOG4162 Predicted calmodulin-b 80.9 62 0.0013 32.2 16.9 165 113-279 313-522 (799)
248 PF13428 TPR_14: Tetratricopep 80.6 4.4 9.5E-05 24.0 4.2 28 161-188 3-30 (44)
249 PF11846 DUF3366: Domain of un 80.5 11 0.00024 30.7 7.9 58 95-152 115-173 (193)
250 PRK10866 outer membrane biogen 80.5 35 0.00076 29.0 12.2 77 90-170 35-115 (243)
251 KOG0548 Molecular co-chaperone 80.3 12 0.00026 35.2 8.6 103 96-204 10-114 (539)
252 KOG0543 FKBP-type peptidyl-pro 80.1 20 0.00042 32.7 9.6 58 161-219 259-316 (397)
253 KOG3060 Uncharacterized conser 79.6 39 0.00084 29.0 16.0 142 71-219 70-216 (289)
254 PF09613 HrpB1_HrpK: Bacterial 79.0 30 0.00065 27.4 12.7 111 96-215 18-130 (160)
255 PF04053 Coatomer_WDAD: Coatom 78.7 46 0.001 31.2 12.1 124 45-184 298-427 (443)
256 COG1729 Uncharacterized protei 77.8 45 0.00098 28.7 10.9 97 90-188 144-244 (262)
257 PF00637 Clathrin: Region in C 77.8 0.61 1.3E-05 35.9 -0.4 54 94-147 13-66 (143)
258 PF13762 MNE1: Mitochondrial s 77.3 32 0.00069 26.8 10.6 102 73-175 22-131 (145)
259 COG5187 RPN7 26S proteasome re 76.6 52 0.0011 28.9 12.5 134 84-223 77-221 (412)
260 PF11207 DUF2989: Protein of u 76.4 30 0.00066 28.5 9.0 79 133-214 117-198 (203)
261 COG4455 ImpE Protein of avirul 76.2 24 0.00052 29.6 8.3 78 90-168 3-81 (273)
262 KOG4077 Cytochrome c oxidase, 76.1 15 0.00032 27.9 6.4 46 71-116 67-112 (149)
263 PF00515 TPR_1: Tetratricopept 76.1 9.5 0.00021 20.8 4.5 27 125-151 3-29 (34)
264 KOG0687 26S proteasome regulat 75.6 59 0.0013 29.0 12.3 143 81-228 63-215 (393)
265 PF11207 DUF2989: Protein of u 75.5 30 0.00064 28.5 8.7 83 95-179 114-198 (203)
266 PF07721 TPR_4: Tetratricopept 75.5 5.7 0.00012 20.6 3.2 18 129-146 7-24 (26)
267 KOG1920 IkappaB kinase complex 75.3 50 0.0011 34.5 11.8 75 99-186 950-1026(1265)
268 PF13431 TPR_17: Tetratricopep 74.8 4.6 9.9E-05 22.6 2.9 20 160-179 14-33 (34)
269 PF07079 DUF1347: Protein of u 74.8 67 0.0014 30.1 11.5 116 99-219 17-153 (549)
270 cd08819 CARD_MDA5_2 Caspase ac 74.4 26 0.00057 24.6 7.0 16 171-186 48-63 (88)
271 COG2909 MalT ATP-dependent tra 74.0 1.1E+02 0.0023 31.2 15.5 199 58-262 463-684 (894)
272 KOG0548 Molecular co-chaperone 73.9 51 0.0011 31.2 10.7 98 67-169 16-114 (539)
273 KOG1127 TPR repeat-containing 73.6 57 0.0012 33.6 11.5 142 72-219 511-655 (1238)
274 COG4649 Uncharacterized protei 73.0 49 0.0011 26.8 13.1 133 88-223 59-196 (221)
275 COG3898 Uncharacterized membra 72.9 78 0.0017 29.1 16.5 148 67-219 134-288 (531)
276 PF13929 mRNA_stabil: mRNA sta 72.2 67 0.0015 28.1 13.0 137 104-246 144-285 (292)
277 PF07035 Mic1: Colon cancer-as 71.9 49 0.0011 26.4 16.7 130 72-217 13-143 (167)
278 KOG0276 Vesicle coat complex C 71.0 55 0.0012 31.7 10.3 101 97-219 646-746 (794)
279 KOG1585 Protein required for f 70.9 67 0.0015 27.5 10.9 93 161-260 152-250 (308)
280 KOG2041 WD40 repeat protein [G 70.2 75 0.0016 31.5 11.1 26 193-218 851-876 (1189)
281 PF10366 Vps39_1: Vacuolar sor 70.1 33 0.00071 25.1 7.2 26 162-187 42-67 (108)
282 COG4455 ImpE Protein of avirul 70.0 49 0.0011 27.8 8.7 63 69-132 17-81 (273)
283 KOG1538 Uncharacterized conser 68.8 18 0.00039 35.2 6.8 94 120-219 553-657 (1081)
284 PF02284 COX5A: Cytochrome c o 68.7 43 0.00092 24.4 9.5 77 90-168 10-88 (108)
285 PF11848 DUF3368: Domain of un 68.6 24 0.00052 21.5 5.3 32 171-202 14-45 (48)
286 PF09477 Type_III_YscG: Bacter 68.5 44 0.00096 24.5 7.7 82 173-269 20-101 (116)
287 PF08631 SPO22: Meiosis protei 68.1 80 0.0017 27.3 17.7 102 89-194 85-192 (278)
288 PF14689 SPOB_a: Sensor_kinase 67.2 25 0.00054 22.8 5.5 45 139-186 6-50 (62)
289 PRK15180 Vi polysaccharide bio 67.0 68 0.0015 30.3 9.9 110 73-187 310-419 (831)
290 PF07719 TPR_2: Tetratricopept 66.5 18 0.0004 19.4 4.5 24 127-150 5-28 (34)
291 PF13181 TPR_8: Tetratricopept 66.3 19 0.0004 19.4 4.2 27 125-151 3-29 (34)
292 TIGR03504 FimV_Cterm FimV C-te 66.3 13 0.00028 22.4 3.6 25 165-189 5-29 (44)
293 COG3947 Response regulator con 66.2 53 0.0011 28.9 8.5 56 161-217 281-336 (361)
294 PF13512 TPR_18: Tetratricopep 65.6 61 0.0013 25.1 9.5 72 68-139 25-98 (142)
295 COG4105 ComL DNA uptake lipopr 65.6 87 0.0019 26.8 17.3 149 67-218 48-228 (254)
296 PF11846 DUF3366: Domain of un 65.5 29 0.00062 28.2 6.9 49 171-219 120-169 (193)
297 PF07163 Pex26: Pex26 protein; 65.1 96 0.0021 27.1 10.4 90 92-182 87-181 (309)
298 PHA02875 ankyrin repeat protei 65.0 1.1E+02 0.0024 27.9 12.4 137 73-219 15-157 (413)
299 KOG2908 26S proteasome regulat 64.8 1E+02 0.0023 27.6 10.2 85 128-212 80-175 (380)
300 PF00515 TPR_1: Tetratricopept 64.8 21 0.00045 19.3 4.6 29 89-117 2-30 (34)
301 PF14689 SPOB_a: Sensor_kinase 64.7 20 0.00043 23.3 4.6 46 104-151 6-51 (62)
302 COG4105 ComL DNA uptake lipopr 64.4 92 0.002 26.7 11.0 81 88-171 35-118 (254)
303 PF07163 Pex26: Pex26 protein; 64.2 1E+02 0.0022 27.0 10.1 90 128-218 88-182 (309)
304 KOG2610 Uncharacterized conser 62.9 1.2E+02 0.0026 27.4 14.2 143 74-219 124-272 (491)
305 TIGR03504 FimV_Cterm FimV C-te 62.7 20 0.00043 21.6 4.0 22 130-151 6-27 (44)
306 PF10579 Rapsyn_N: Rapsyn N-te 62.5 30 0.00066 23.8 5.2 47 171-217 18-66 (80)
307 TIGR02508 type_III_yscG type I 62.4 58 0.0013 23.7 7.8 86 103-197 20-105 (115)
308 COG4649 Uncharacterized protei 62.0 85 0.0018 25.5 12.6 137 123-270 59-200 (221)
309 PF13174 TPR_6: Tetratricopept 61.8 16 0.00035 19.4 3.4 21 131-151 8-28 (33)
310 TIGR02561 HrpB1_HrpK type III 60.8 79 0.0017 24.8 11.4 90 99-194 21-112 (153)
311 PF09613 HrpB1_HrpK: Bacterial 60.8 82 0.0018 24.9 9.4 69 133-205 20-88 (160)
312 PF13525 YfiO: Outer membrane 59.7 96 0.0021 25.3 14.7 77 94-171 11-89 (203)
313 PRK10564 maltose regulon perip 59.6 23 0.0005 31.1 5.3 35 120-154 253-288 (303)
314 KOG2114 Vacuolar assembly/sort 57.9 1.3E+02 0.0027 30.5 10.4 124 89-225 335-462 (933)
315 PF11848 DUF3368: Domain of un 57.3 42 0.00091 20.5 5.2 30 135-165 14-43 (48)
316 PRK10564 maltose regulon perip 56.1 26 0.00057 30.7 5.1 42 160-201 258-299 (303)
317 PF08311 Mad3_BUB1_I: Mad3/BUB 56.0 51 0.0011 24.8 6.2 43 141-183 81-123 (126)
318 PF02847 MA3: MA3 domain; Int 53.7 37 0.00081 24.6 5.1 21 129-149 8-28 (113)
319 cd00923 Cyt_c_Oxidase_Va Cytoc 53.6 83 0.0018 22.7 9.7 63 103-167 22-84 (103)
320 PF07079 DUF1347: Protein of u 53.5 2E+02 0.0043 27.1 12.5 114 90-207 48-180 (549)
321 PF09477 Type_III_YscG: Bacter 53.4 89 0.0019 23.0 9.0 80 102-189 20-99 (116)
322 cd08819 CARD_MDA5_2 Caspase ac 53.0 78 0.0017 22.3 7.4 67 107-180 21-87 (88)
323 COG0735 Fur Fe2+/Zn2+ uptake r 52.8 91 0.002 24.1 7.3 68 143-212 6-73 (145)
324 COG5108 RPO41 Mitochondrial DN 52.4 99 0.0021 30.5 8.5 47 93-139 33-81 (1117)
325 PF13281 DUF4071: Domain of un 52.2 1.9E+02 0.0041 26.5 15.7 189 72-266 122-334 (374)
326 cd08318 Death_NMPP84 Death dom 51.8 61 0.0013 22.6 5.6 42 67-110 44-85 (86)
327 PF14669 Asp_Glu_race_2: Putat 51.4 48 0.001 27.2 5.5 56 92-147 136-205 (233)
328 PF11663 Toxin_YhaV: Toxin wit 51.4 16 0.00034 28.0 2.7 32 135-169 107-138 (140)
329 smart00544 MA3 Domain in DAP-5 51.0 93 0.002 22.5 9.0 21 94-114 8-28 (113)
330 PF09454 Vps23_core: Vps23 cor 50.8 31 0.00067 22.7 3.7 49 121-171 6-54 (65)
331 COG5108 RPO41 Mitochondrial DN 50.8 98 0.0021 30.6 8.2 77 128-204 33-113 (1117)
332 KOG2041 WD40 repeat protein [G 50.7 2.7E+02 0.0059 27.9 11.1 101 161-270 854-960 (1189)
333 KOG0550 Molecular chaperone (D 49.9 2.2E+02 0.0047 26.5 10.7 109 97-209 258-372 (486)
334 KOG0550 Molecular chaperone (D 49.6 1.7E+02 0.0036 27.2 9.1 128 86-216 166-309 (486)
335 cd08315 Death_TRAILR_DR4_DR5 D 49.5 94 0.002 22.2 7.4 31 123-153 64-94 (96)
336 PF14669 Asp_Glu_race_2: Putat 49.5 1.5E+02 0.0032 24.5 11.3 93 160-262 108-206 (233)
337 smart00777 Mad3_BUB1_I Mad3/BU 49.1 1.1E+02 0.0025 23.0 7.5 42 177-218 81-123 (125)
338 COG0735 Fur Fe2+/Zn2+ uptake r 48.9 1.2E+02 0.0025 23.6 7.3 47 75-122 8-54 (145)
339 COG2178 Predicted RNA-binding 48.4 1.5E+02 0.0033 24.3 9.3 94 124-219 30-146 (204)
340 PF07035 Mic1: Colon cancer-as 47.2 1.5E+02 0.0032 23.7 13.0 101 107-219 13-114 (167)
341 PRK15180 Vi polysaccharide bio 46.9 2.6E+02 0.0057 26.6 10.9 120 95-219 296-416 (831)
342 PRK09857 putative transposase; 46.7 1.9E+02 0.0042 25.4 9.2 68 124-193 207-274 (292)
343 KOG2659 LisH motif-containing 46.6 1.1E+02 0.0024 25.7 7.2 98 119-218 22-127 (228)
344 COG4700 Uncharacterized protei 46.2 1.7E+02 0.0037 24.2 14.3 99 118-219 84-185 (251)
345 COG3118 Thioredoxin domain-con 46.0 2.1E+02 0.0046 25.2 14.7 119 94-217 140-259 (304)
346 KOG0403 Neoplastic transformat 45.6 1.2E+02 0.0025 28.5 7.6 61 127-189 513-573 (645)
347 KOG2280 Vacuolar assembly/sort 44.8 1.2E+02 0.0027 30.2 8.0 93 118-221 679-771 (829)
348 smart00028 TPR Tetratricopepti 43.7 42 0.00091 16.5 3.6 25 126-150 4-28 (34)
349 PF11663 Toxin_YhaV: Toxin wit 43.5 17 0.00037 27.8 1.8 33 99-133 106-138 (140)
350 PF10366 Vps39_1: Vacuolar sor 43.2 1.1E+02 0.0024 22.3 6.1 27 125-151 41-67 (108)
351 PRK14956 DNA polymerase III su 43.1 3E+02 0.0065 26.2 12.4 35 161-195 250-284 (484)
352 COG0457 NrfG FOG: TPR repeat [ 42.6 1.6E+02 0.0034 22.8 18.9 134 85-219 92-227 (291)
353 smart00544 MA3 Domain in DAP-5 42.3 1.3E+02 0.0028 21.7 10.3 61 127-189 6-67 (113)
354 PF09868 DUF2095: Uncharacteri 41.6 1.3E+02 0.0027 22.4 5.9 24 95-118 68-91 (128)
355 COG3682 Predicted transcriptio 41.5 98 0.0021 23.3 5.5 104 165-291 11-114 (123)
356 PRK11639 zinc uptake transcrip 41.4 1.6E+02 0.0034 23.4 7.3 63 148-212 16-78 (169)
357 cd07153 Fur_like Ferric uptake 41.2 79 0.0017 23.0 5.2 49 164-212 5-53 (116)
358 KOG1130 Predicted G-alpha GTPa 41.1 85 0.0018 29.1 6.0 131 89-219 196-340 (639)
359 PRK11639 zinc uptake transcrip 41.1 1.8E+02 0.0039 23.1 7.5 60 79-139 17-76 (169)
360 cd08779 Death_PIDD Death Domai 39.8 1.1E+02 0.0024 21.3 5.4 43 67-110 40-82 (86)
361 KOG0403 Neoplastic transformat 39.8 2E+02 0.0044 27.0 8.2 68 162-232 512-582 (645)
362 PF02607 B12-binding_2: B12 bi 39.6 65 0.0014 21.6 4.2 38 171-208 13-50 (79)
363 KOG4567 GTPase-activating prot 39.5 1.6E+02 0.0035 26.1 7.3 59 107-171 262-320 (370)
364 PF02847 MA3: MA3 domain; Int 39.3 1.4E+02 0.0031 21.4 7.8 62 91-154 5-68 (113)
365 PF13934 ELYS: Nuclear pore co 39.0 2.3E+02 0.0051 23.7 8.6 24 200-223 114-137 (226)
366 TIGR02561 HrpB1_HrpK type III 38.8 1.9E+02 0.0041 22.7 9.9 53 135-189 22-74 (153)
367 PF08311 Mad3_BUB1_I: Mad3/BUB 38.5 1.7E+02 0.0037 22.0 8.4 44 176-219 80-124 (126)
368 KOG4648 Uncharacterized conser 38.1 2.9E+02 0.0063 25.1 8.7 86 96-194 105-198 (536)
369 PF02259 FAT: FAT domain; Int 37.8 2.8E+02 0.0061 24.3 12.2 170 87-265 30-212 (352)
370 KOG2058 Ypt/Rab GTPase activat 37.5 3.5E+02 0.0076 25.3 10.1 109 52-169 242-359 (436)
371 KOG0624 dsRNA-activated protei 37.3 3.2E+02 0.007 24.8 13.7 108 162-271 310-426 (504)
372 PF07575 Nucleopor_Nup85: Nup8 35.6 1.4E+02 0.003 29.0 7.2 24 249-272 507-530 (566)
373 KOG1130 Predicted G-alpha GTPa 35.5 54 0.0012 30.3 4.0 50 97-146 26-78 (639)
374 smart00777 Mad3_BUB1_I Mad3/BU 35.3 99 0.0022 23.4 4.9 44 140-183 80-123 (125)
375 PRK14958 DNA polymerase III su 35.2 4.1E+02 0.0089 25.5 12.3 79 113-194 190-280 (509)
376 PF04097 Nic96: Nup93/Nic96; 34.4 1.5E+02 0.0033 29.1 7.3 89 95-188 265-356 (613)
377 PF12926 MOZART2: Mitotic-spin 34.4 1.6E+02 0.0036 20.6 8.2 44 109-152 29-72 (88)
378 KOG0624 dsRNA-activated protei 34.4 3.6E+02 0.0078 24.6 17.4 97 93-194 160-256 (504)
379 KOG4648 Uncharacterized conser 34.2 1.1E+02 0.0024 27.6 5.6 84 131-217 105-188 (536)
380 PF05734 DUF832: Herpesvirus p 34.1 1.5E+02 0.0033 25.0 6.2 27 161-187 17-43 (228)
381 cd08777 Death_RIP1 Death Domai 33.8 1.4E+02 0.0029 20.9 5.0 41 69-110 43-83 (86)
382 PF11838 ERAP1_C: ERAP1-like C 33.2 3.3E+02 0.0071 23.7 12.9 119 95-219 136-262 (324)
383 KOG4414 COP9 signalosome, subu 33.2 45 0.00098 25.8 2.7 32 192-223 37-68 (197)
384 PRK07003 DNA polymerase III su 33.1 5.5E+02 0.012 26.3 13.8 81 71-154 182-276 (830)
385 COG4003 Uncharacterized protei 32.9 83 0.0018 21.8 3.6 26 93-118 36-61 (98)
386 PF01475 FUR: Ferric uptake re 32.6 1E+02 0.0022 22.7 4.6 52 161-212 9-60 (120)
387 KOG1166 Mitotic checkpoint ser 32.5 2.3E+02 0.005 29.6 8.2 61 134-194 89-149 (974)
388 cd07153 Fur_like Ferric uptake 32.3 1.2E+02 0.0025 22.1 4.9 46 94-139 6-51 (116)
389 PRK08691 DNA polymerase III su 32.2 5.4E+02 0.012 25.9 11.6 87 105-194 181-280 (709)
390 PF09454 Vps23_core: Vps23 cor 31.7 99 0.0022 20.3 3.8 51 85-136 5-55 (65)
391 PF11817 Foie-gras_1: Foie gra 31.6 1.6E+02 0.0035 24.9 6.3 59 127-185 182-244 (247)
392 smart00005 DEATH DEATH domain, 31.3 1.7E+02 0.0037 19.9 5.4 38 69-108 46-83 (88)
393 COG0457 NrfG FOG: TPR repeat [ 31.0 2.5E+02 0.0053 21.6 19.1 120 97-219 139-261 (291)
394 KOG0276 Vesicle coat complex C 30.6 5.4E+02 0.012 25.4 11.5 81 88-184 666-746 (794)
395 cd08317 Death_ank Death domain 30.3 1.6E+02 0.0034 20.3 4.9 36 70-107 45-80 (84)
396 PF11817 Foie-gras_1: Foie gra 30.1 3.4E+02 0.0074 23.0 8.4 73 141-216 163-240 (247)
397 PF12862 Apc5: Anaphase-promot 30.1 1.9E+02 0.0042 20.1 8.1 54 99-152 9-70 (94)
398 cd08316 Death_FAS_TNFRSF6 Deat 29.4 2.1E+02 0.0047 20.5 5.5 42 68-112 48-90 (97)
399 PF11768 DUF3312: Protein of u 29.1 2.7E+02 0.0059 26.8 7.6 59 127-188 412-473 (545)
400 PF08631 SPO22: Meiosis protei 29.0 3.8E+02 0.0082 23.1 18.1 147 68-218 102-270 (278)
401 cd08330 CARD_ASC_NALP1 Caspase 28.3 1.7E+02 0.0036 20.2 4.7 57 139-204 14-70 (82)
402 KOG4567 GTPase-activating prot 28.2 3.7E+02 0.008 24.0 7.6 74 142-221 262-345 (370)
403 smart00638 LPD_N Lipoprotein N 28.0 5.6E+02 0.012 24.8 16.4 116 86-208 308-432 (574)
404 PF04090 RNA_pol_I_TF: RNA pol 28.0 3.5E+02 0.0075 22.3 7.5 26 127-152 45-70 (199)
405 KOG3807 Predicted membrane pro 27.9 4.2E+02 0.0092 23.9 8.0 55 100-154 287-342 (556)
406 PF10345 Cohesin_load: Cohesin 27.6 5.9E+02 0.013 24.9 15.6 190 69-260 37-248 (608)
407 COG5210 GTPase-activating prot 27.3 5.5E+02 0.012 24.4 11.8 48 107-154 361-408 (496)
408 PRK08691 DNA polymerase III su 27.2 6.6E+02 0.014 25.3 13.9 82 71-155 182-277 (709)
409 PRK09462 fur ferric uptake reg 26.9 2.9E+02 0.0064 21.2 7.2 64 147-212 6-70 (148)
410 PF00531 Death: Death domain; 26.8 1.6E+02 0.0034 19.7 4.5 40 69-110 40-79 (83)
411 PF08870 DUF1832: Domain of un 26.8 2.6E+02 0.0057 20.6 6.4 87 176-284 6-94 (113)
412 PF11838 ERAP1_C: ERAP1-like C 25.8 4.4E+02 0.0096 22.9 13.2 144 69-218 146-303 (324)
413 PRK09462 fur ferric uptake reg 25.6 3.1E+02 0.0068 21.0 7.4 61 78-139 7-68 (148)
414 COG3118 Thioredoxin domain-con 25.3 4.8E+02 0.01 23.1 14.7 140 69-213 150-291 (304)
415 COG3947 Response regulator con 25.3 4.9E+02 0.011 23.2 15.9 53 131-185 287-339 (361)
416 KOG3036 Protein involved in ce 25.1 2.2E+02 0.0048 24.5 5.6 58 168-225 205-263 (293)
417 PRK14963 DNA polymerase III su 25.0 6.2E+02 0.013 24.3 11.4 87 103-192 176-274 (504)
418 COG2976 Uncharacterized protei 24.9 4E+02 0.0087 22.0 12.9 88 130-219 96-184 (207)
419 COG4003 Uncharacterized protei 24.9 1.4E+02 0.003 20.7 3.6 30 161-190 32-62 (98)
420 smart00386 HAT HAT (Half-A-TPR 24.6 1.1E+02 0.0024 15.6 3.9 15 138-152 2-16 (33)
421 TIGR03581 EF_0839 conserved hy 24.5 1.6E+02 0.0034 24.7 4.5 83 104-186 137-235 (236)
422 PF09670 Cas_Cas02710: CRISPR- 24.4 5.5E+02 0.012 23.5 11.8 58 95-153 138-199 (379)
423 KOG0686 COP9 signalosome, subu 24.2 5.9E+02 0.013 23.7 10.6 95 123-219 150-254 (466)
424 PF04124 Dor1: Dor1-like famil 24.1 3.3E+02 0.0072 24.4 7.1 23 128-150 111-133 (338)
425 KOG2908 26S proteasome regulat 23.7 5.5E+02 0.012 23.2 10.7 86 85-171 71-168 (380)
426 PRK14971 DNA polymerase III su 23.7 7.2E+02 0.016 24.5 12.1 76 115-193 194-281 (614)
427 cd08311 Death_p75NR Death doma 23.6 2.5E+02 0.0053 19.1 4.9 19 124-142 55-73 (77)
428 KOG1920 IkappaB kinase complex 23.5 9.4E+02 0.02 25.8 12.1 52 161-221 941-992 (1265)
429 PF03745 DUF309: Domain of unk 23.4 2.2E+02 0.0047 18.4 5.5 46 171-216 11-61 (62)
430 KOG3807 Predicted membrane pro 23.3 5.6E+02 0.012 23.2 10.6 68 121-189 271-341 (556)
431 TIGR03184 DNA_S_dndE DNA sulfu 23.2 3E+02 0.0066 20.0 6.5 87 176-283 5-95 (105)
432 cd08315 Death_TRAILR_DR4_DR5 D 22.9 2.9E+02 0.0062 19.7 5.8 29 161-189 66-94 (96)
433 KOG1941 Acetylcholine receptor 22.9 3.1E+02 0.0067 25.2 6.3 97 88-184 162-271 (518)
434 smart00638 LPD_N Lipoprotein N 22.9 7E+02 0.015 24.1 16.1 156 56-216 311-482 (574)
435 KOG2297 Predicted translation 22.6 2.3E+02 0.005 25.3 5.4 118 84-214 219-341 (412)
436 PF01475 FUR: Ferric uptake re 22.5 1.6E+02 0.0036 21.5 4.2 45 93-137 12-56 (120)
437 KOG2659 LisH motif-containing 22.4 4.8E+02 0.01 22.0 10.3 101 83-186 21-130 (228)
438 PRK11906 transcriptional regul 22.3 6.7E+02 0.014 23.7 13.6 112 69-184 320-432 (458)
439 PRK14951 DNA polymerase III su 21.9 7.8E+02 0.017 24.3 14.1 81 72-155 188-282 (618)
440 PRK07764 DNA polymerase III su 21.8 8.9E+02 0.019 25.0 11.8 29 164-193 253-281 (824)
441 cd08326 CARD_CASP9 Caspase act 21.8 2.8E+02 0.0061 19.2 7.2 33 137-174 44-76 (84)
442 KOG2297 Predicted translation 21.7 5.9E+02 0.013 22.8 12.4 57 171-228 267-332 (412)
443 PF12862 Apc5: Anaphase-promot 21.4 2.9E+02 0.0063 19.2 7.0 53 134-187 9-69 (94)
444 PRK07764 DNA polymerase III su 21.3 9.1E+02 0.02 24.9 11.8 78 105-187 182-260 (824)
445 COG0819 TenA Putative transcri 21.3 4.9E+02 0.011 21.8 8.6 94 113-207 99-203 (218)
446 COG5159 RPN6 26S proteasome re 21.3 2.2E+02 0.0048 25.1 5.0 44 170-213 14-64 (421)
447 KOG4077 Cytochrome c oxidase, 20.5 4E+02 0.0087 20.4 7.8 67 87-153 46-114 (149)
448 COG1466 HolA DNA polymerase II 20.4 3E+02 0.0064 24.6 6.1 88 181-270 149-241 (334)
449 PRK14951 DNA polymerase III su 20.3 8.4E+02 0.018 24.1 12.5 87 105-194 186-285 (618)
450 PF08771 Rapamycin_bind: Rapam 20.2 3.4E+02 0.0073 19.5 5.9 77 92-171 18-96 (100)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.8e-36 Score=301.03 Aligned_cols=280 Identities=16% Similarity=0.117 Sum_probs=188.8
Q ss_pred ccccchhhhhccCCCCCCchHHHHHHHhcCcCchHhHHHHHHhcC------------------------CcHHHHHHHHH
Q 021583 22 RNARSLVVCAARGPRPRYPRVWKARKRIGTISKSAKLVTCIKGLS------------------------NVKEEVYGALD 77 (310)
Q Consensus 22 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------------------------~~~~~~~~~~~ 77 (310)
+.+....++.........|++..++.++..+++.+.+..+...+. +..++|.++|+
T Consensus 452 ~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~ 531 (1060)
T PLN03218 452 DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG 531 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 334444455444444455666666666666666666555543222 34445666677
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 021583 78 SFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLS--KGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLE 155 (310)
Q Consensus 78 ~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~ 155 (310)
+|.+.|+.||..+||.+|.+|++.|++++|.++|++|.+ .|+.||.++|++||.+|++.|++++|+++|++|.+.++
T Consensus 532 ~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi- 610 (1060)
T PLN03218 532 IMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI- 610 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-
Confidence 777777777777777777777777777777777777754 46677777777777777777777777777777777776
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-----CCCCccchh--
Q 021583 156 GTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK-----YPPPKWEYR-- 228 (310)
Q Consensus 156 ~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~-----~~p~~~~~~-- 228 (310)
.++..+||+||.+|++.|++++|.++|++|.+.|+.||..||++||++|++.|++++|.++|++ +.|+..+|+
T Consensus 611 ~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsL 690 (1060)
T PLN03218 611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSL 690 (1060)
T ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3555677777777777777777777777777777777777777777777777777777777765 345555544
Q ss_pred ------------------eeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhcCCCCCchhhhhhhhhhhhh----
Q 021583 229 ------------------YIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNESSEEPEAAANLNESLEETEA---- 284 (310)
Q Consensus 229 ------------------~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~---- 284 (310)
.|...++.|+..+|++||.+ +.|++++|.++++.|...|+.|+..+|+.++..+..
T Consensus 691 I~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~l 770 (1060)
T PLN03218 691 MGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA 770 (1060)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 44456677788888888887 778888888888888888888888888888744333
Q ss_pred -hhHHHHHHhhhccccccc
Q 021583 285 -NTKELLEEADAISNESDI 302 (310)
Q Consensus 285 -~~~~l~~~a~~~~~~~~~ 302 (310)
.+.++++++...++.+|.
T Consensus 771 e~A~~l~~~M~k~Gi~pd~ 789 (1060)
T PLN03218 771 DVGLDLLSQAKEDGIKPNL 789 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCH
Confidence 566677777666666664
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.7e-35 Score=292.68 Aligned_cols=262 Identities=11% Similarity=0.129 Sum_probs=217.3
Q ss_pred chHHHHHHHhcCcCchHhHHHHHHhcC------------------------CcHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 021583 40 PRVWKARKRIGTISKSAKLVTCIKGLS------------------------NVKEEVYGALDSFIAWELEFPLITVKKAL 95 (310)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~l~~~~------------------------~~~~~~~~~~~~m~~~~~~p~~~~~~~li 95 (310)
|+..+++.++..+++.+++..+...+. +..+.|.++|++|.+.|+.||..+|+.+|
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI 514 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 677777777777777776666654332 56677888999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCChHHHHHHHHHHHHHcC
Q 021583 96 KTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFL--DHLEGTPRIFFDKMISIYYNRG 173 (310)
Q Consensus 96 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~~~y~~li~~~~~~g 173 (310)
.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+ .++. ++.++|++||.+|++.|
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~-PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPID-PDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCC-CcHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999976 4663 67789999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-----CCCccchh--------------------
Q 021583 174 MHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKY-----PPPKWEYR-------------------- 228 (310)
Q Consensus 174 ~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~-----~p~~~~~~-------------------- 228 (310)
++++|+++|++|.+.|+.|+..+|++||.+|++.|++++|.++|++| .|+..+|+
T Consensus 594 ~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998764 67766666
Q ss_pred eeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhcCCCCCchhhhhhhhhhhh-----hhhHHHHHHhhhcccccc
Q 021583 229 YIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNESSEEPEAAANLNESLEETE-----ANTKELLEEADAISNESD 301 (310)
Q Consensus 229 ~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-----~~~~~l~~~a~~~~~~~~ 301 (310)
.|.+.|+.++..+|++|+.+ +.|++++|.++++.|...|+.|+..+||.++.... +.+.++++++...++.+|
T Consensus 674 eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd 753 (1060)
T PLN03218 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 45567888888899988888 88889999999988888888899999998883332 256677777766666666
Q ss_pred c
Q 021583 302 I 302 (310)
Q Consensus 302 ~ 302 (310)
.
T Consensus 754 ~ 754 (1060)
T PLN03218 754 T 754 (1060)
T ss_pred H
Confidence 4
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.9e-32 Score=267.63 Aligned_cols=229 Identities=14% Similarity=0.112 Sum_probs=200.5
Q ss_pred CchHHHHHHHhcCcCchHhHHHHHHhcC--------------------CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 021583 39 YPRVWKARKRIGTISKSAKLVTCIKGLS--------------------NVKEEVYGALDSFIAWELEFPLITVKKALKTL 98 (310)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------------------~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~ 98 (310)
.++...++.++..|++.+.+.+|...+. +..++|.++|++|.+.|+.||..||+++|.+|
T Consensus 256 ~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~ 335 (697)
T PLN03081 256 VGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIF 335 (697)
T ss_pred CccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4566667777777777777666654443 45667899999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHH
Q 021583 99 ENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKM 178 (310)
Q Consensus 99 ~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a 178 (310)
++.|++++|.++++.|.+.|+.||..+|++||++|+++|++++|+++|++|.+. +.++||+||.+|++.|+.++|
T Consensus 336 ~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~-----d~~t~n~lI~~y~~~G~~~~A 410 (697)
T PLN03081 336 SRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK-----NLISWNALIAGYGNHGRGTKA 410 (697)
T ss_pred HhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCC-----CeeeHHHHHHHHHHcCCHHHH
Confidence 999999999999999999999999999999999999999999999999999754 447999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCcccCChhhhhHhhhc--cCCChhhH
Q 021583 179 FEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEV 256 (310)
Q Consensus 179 ~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a 256 (310)
.++|++|.+.|+.||..||+++|++|++.|.+++|.++|+.|. ...++.|+..+|+.+++. +.|++++|
T Consensus 411 ~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~---------~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 411 VEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS---------ENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHH---------HhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 9999999999999999999999999999999999999976643 235778999999999999 99999999
Q ss_pred HhhhchhhcCCCCCchhhhhhhhhhhhh
Q 021583 257 ETTKNPNESSEEPEAAANLNESLEETEA 284 (310)
Q Consensus 257 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 284 (310)
.++++.| ++.|+..+|+.++..+..
T Consensus 482 ~~~~~~~---~~~p~~~~~~~Ll~a~~~ 506 (697)
T PLN03081 482 YAMIRRA---PFKPTVNMWAALLTACRI 506 (697)
T ss_pred HHHHHHC---CCCCCHHHHHHHHHHHHH
Confidence 9888765 567899999999955543
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=8.2e-32 Score=263.17 Aligned_cols=259 Identities=12% Similarity=0.105 Sum_probs=166.2
Q ss_pred CchHHHHHHHhcCcCchHhHHHHHHhcC--------------------CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 021583 39 YPRVWKARKRIGTISKSAKLVTCIKGLS--------------------NVKEEVYGALDSFIAWELEFPLITVKKALKTL 98 (310)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------------------~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~ 98 (310)
.|+...++.++..+++.+.+..|...+. +..++|.++|++|.+.|..|+..+|+.++.+|
T Consensus 155 ~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~ 234 (697)
T PLN03081 155 EPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRAS 234 (697)
T ss_pred CcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHH
Confidence 3455555555555555555555543332 34455666666666555555555555554444
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHH
Q 021583 99 ENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKM 178 (310)
Q Consensus 99 ~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a 178 (310)
++.|+.+.+.+++..+.+.|+.||..+|++||++|+++|++++|.++|++|.+. +.++||+||.+|++.|++++|
T Consensus 235 ~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-----~~vt~n~li~~y~~~g~~~eA 309 (697)
T PLN03081 235 AGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK-----TTVAWNSMLAGYALHGYSEEA 309 (697)
T ss_pred hcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCC-----ChhHHHHHHHHHHhCCCHHHH
Confidence 444444444444444445555556666677777777777777777777777543 446777777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-----CCCCccchheecc----------------CcccC
Q 021583 179 FEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK-----YPPPKWEYRYIKG----------------KRVRI 237 (310)
Q Consensus 179 ~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~-----~~p~~~~~~~~~~----------------~~~~~ 237 (310)
+++|++|.+.|+.||..||++++++|++.|++++|.++++. +.|+..+|+.+.. .-..+
T Consensus 310 ~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~ 389 (697)
T PLN03081 310 LCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK 389 (697)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 77777777777777777777777777777777777777754 3555555552111 11246
Q ss_pred ChhhhhHhhhc--cCCChhhHHhhhchhhcCCCCCchhhhhhhhhhhhh-----hhHHHHHHhhh-ccccccc
Q 021583 238 PAKPKYELDSA--TEGKTNEVETTKNPNESSEEPEAAANLNESLEETEA-----NTKELLEEADA-ISNESDI 302 (310)
Q Consensus 238 ~~~~~~~li~~--~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-----~~~~l~~~a~~-~~~~~~~ 302 (310)
|..+||+||.+ +.|+.++|.+++++|...|+.||..||+.++..+.. .+.++++++.. .++.++.
T Consensus 390 d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~ 462 (697)
T PLN03081 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA 462 (697)
T ss_pred CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCc
Confidence 77888888888 888888888888888888888888888888844433 44455555532 3555543
No 5
>PLN03077 Protein ECB2; Provisional
Probab=99.97 E-value=2.6e-30 Score=258.09 Aligned_cols=246 Identities=11% Similarity=-0.026 Sum_probs=179.2
Q ss_pred hhhhccCCCCCCchHHHHHHHhcCcCchHhHHHHHHhcC--------------------CcHHHHHHHHHHHHHcCCCCC
Q 021583 28 VVCAARGPRPRYPRVWKARKRIGTISKSAKLVTCIKGLS--------------------NVKEEVYGALDSFIAWELEFP 87 (310)
Q Consensus 28 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------------------~~~~~~~~~~~~m~~~~~~p~ 87 (310)
.+++..-.....|++..++.++..+++.+.+.++...+. +..++|.++|++|.+.|+.||
T Consensus 309 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd 388 (857)
T PLN03077 309 EMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD 388 (857)
T ss_pred HHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCC
Confidence 333333334456778888888888888888777765544 456788999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMIS 167 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~ 167 (310)
..||+.+|.+|++.|+++.|.++++.|.+.|+.|+..+|++||++|+++|++++|.++|++|.+.+ .++||+||.
T Consensus 389 ~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d-----~vs~~~mi~ 463 (857)
T PLN03077 389 EITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKD-----VISWTSIIA 463 (857)
T ss_pred ceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC-----eeeHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999987643 368999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-----------------------------------hcCCHHH
Q 021583 168 IYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQ-----------------------------------KLGMLDK 212 (310)
Q Consensus 168 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~-----------------------------------~~g~~~~ 212 (310)
+|++.|+.++|.++|++|.. +++||..||+++|.+|+ +.|++++
T Consensus 464 ~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~ 542 (857)
T PLN03077 464 GLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNY 542 (857)
T ss_pred HHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHH
Confidence 99999999999999999875 57787777766655444 4444455
Q ss_pred HHHHHHhCCCCccchh--------------------eeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhh-cCCCC
Q 021583 213 YEKLKKKYPPPKWEYR--------------------YIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNE-SSEEP 269 (310)
Q Consensus 213 a~~l~~~~~p~~~~~~--------------------~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~-~~~~~ 269 (310)
|.++|+++.|+..+|+ .|...|+.||..+|++++.+ +.|++++|.++|+.|. ..|+.
T Consensus 543 A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~ 622 (857)
T PLN03077 543 AWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT 622 (857)
T ss_pred HHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCC
Confidence 5555544444444444 23334555555555555555 5555555555555554 44555
Q ss_pred Cchhhhhhhh
Q 021583 270 EAAANLNESL 279 (310)
Q Consensus 270 p~~~~~~~ll 279 (310)
|+..||+.++
T Consensus 623 P~~~~y~~lv 632 (857)
T PLN03077 623 PNLKHYACVV 632 (857)
T ss_pred CchHHHHHHH
Confidence 5555555554
No 6
>PLN03077 Protein ECB2; Provisional
Probab=99.97 E-value=6.1e-30 Score=255.40 Aligned_cols=261 Identities=13% Similarity=0.064 Sum_probs=156.5
Q ss_pred cccccccchhhhhccCCCCCCchHHHHHHHhcCcCchHhHHHHHHhcCC------------------------cHHHHHH
Q 021583 19 KISRNARSLVVCAARGPRPRYPRVWKARKRIGTISKSAKLVTCIKGLSN------------------------VKEEVYG 74 (310)
Q Consensus 19 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------------------~~~~~~~ 74 (310)
..++......++..... |++.+|+.++..+++.+.+.+++..+.. ....+.+
T Consensus 133 ~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~ 208 (857)
T PLN03077 133 RFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGRE 208 (857)
T ss_pred hCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHH
Confidence 34556666677766543 5778888888888888888877322221 1112233
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 021583 75 ALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHL 154 (310)
Q Consensus 75 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~ 154 (310)
++..|.+.|+.||..+||+||.+|++.|+++.|.++|++|. .||..+||+||.+|++.|++++|+++|++|.+.|+
T Consensus 209 ~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~ 284 (857)
T PLN03077 209 VHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSV 284 (857)
T ss_pred HHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 34444444444444555555555555555555555555553 24555555555555555555555555555555555
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCc
Q 021583 155 EGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKR 234 (310)
Q Consensus 155 ~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~ 234 (310)
. |+.+||+.+|.+|++.|+.+.|.+++..|.+.|+.||..+|++||.+|++.|++++|.++|++|.
T Consensus 285 ~-Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~------------- 350 (857)
T PLN03077 285 D-PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME------------- 350 (857)
T ss_pred C-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-------------
Confidence 2 44555555555555555555555555555555555555556666666666666666666655543
Q ss_pred ccCChhhhhHhhhc--cCCChhhHHhhhchhhcCCCCCchhhhhhhhhhhh-----hhhHHHHHHhhhccccccc
Q 021583 235 VRIPAKPKYELDSA--TEGKTNEVETTKNPNESSEEPEAAANLNESLEETE-----ANTKELLEEADAISNESDI 302 (310)
Q Consensus 235 ~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-----~~~~~l~~~a~~~~~~~~~ 302 (310)
.++..+|++++.+ +.|+.++|.++++.|...|+.|+..+|+.++..+. +..+++.+++...+..+|.
T Consensus 351 -~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~ 424 (857)
T PLN03077 351 -TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYV 424 (857)
T ss_pred -CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcch
Confidence 3567778888888 78888888888888888888888888888884332 2455566666555555443
No 7
>PF13041 PPR_2: PPR repeat family
Probab=99.53 E-value=2.5e-14 Score=90.91 Aligned_cols=50 Identities=22% Similarity=0.488 Sum_probs=41.0
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 021583 157 TPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQK 206 (310)
Q Consensus 157 ~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~ 206 (310)
|+.++||+||++|++.|++++|+++|++|++.|++||..||++||++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 45678888888888888888888888888888888888888888888764
No 8
>PF13041 PPR_2: PPR repeat family
Probab=99.52 E-value=3.7e-14 Score=90.16 Aligned_cols=50 Identities=18% Similarity=0.247 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 021583 86 FPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAE 135 (310)
Q Consensus 86 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~ 135 (310)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||++||++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67778888888888888888888888888888888888888888887764
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.45 E-value=2.2e-11 Score=111.36 Aligned_cols=196 Identities=14% Similarity=0.117 Sum_probs=147.0
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRT----MGTYFLLLNALAEDGRLDEA 142 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~ty~~ll~~~~~~g~~~~A 142 (310)
+..+.|..+++++.+.. +.+..+++.++..|.+.|++++|.+.++.+.+.+-.++ ...|..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 44555677888877653 45677889999999999999999999999887653332 22456677788889999999
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 021583 143 EELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPP 222 (310)
Q Consensus 143 ~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p 222 (310)
.+.|+++.+..- .+...+..+...|.+.|++++|.++++++.+.+-.....+++.+..+|...|++++|...++++..
T Consensus 200 ~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 200 RALLKKALAADP--QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHhHCc--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999887642 344578888899999999999999999988753222246788889999999999999998776321
Q ss_pred CccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhcCCCCCchhhhhhhh
Q 021583 223 PKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNESSEEPEAAANLNESL 279 (310)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 279 (310)
. .|+...+..+... ..|++++|...+..+... .|+...++.++
T Consensus 278 ~------------~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~ 322 (389)
T PRK11788 278 E------------YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLL 322 (389)
T ss_pred h------------CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHH
Confidence 1 2333444555555 899999999999887665 48888888777
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.32 E-value=2e-10 Score=105.03 Aligned_cols=189 Identities=11% Similarity=0.014 Sum_probs=145.0
Q ss_pred CcHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPL----ITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEA 142 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A 142 (310)
+..++|...++.+.+.+-.++. ..+..+...+.+.|++++|...|+++.+.. ..+...+..+...|.+.|++++|
T Consensus 155 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A 233 (389)
T PRK11788 155 KDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAA 233 (389)
T ss_pred chHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHH
Confidence 4455677888888776533322 245667778899999999999999998753 33467888899999999999999
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 021583 143 EELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPP 222 (310)
Q Consensus 143 ~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p 222 (310)
.++|+++.+.+-. ....+++.+..+|++.|++++|.+.++.+.+. .|+...+..+...+.+.|++++|..++++...
T Consensus 234 ~~~~~~~~~~~p~-~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~ 310 (389)
T PRK11788 234 IEALERVEEQDPE-YLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLR 310 (389)
T ss_pred HHHHHHHHHHChh-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999976431 22347899999999999999999999999875 47777779999999999999999999876211
Q ss_pred CccchheeccCcccCChhhhhHhhhc-----cCCChhhHHhhhchhhcCCCCCc
Q 021583 223 PKWEYRYIKGKRVRIPAKPKYELDSA-----TEGKTNEVETTKNPNESSEEPEA 271 (310)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~li~~-----~~g~~~~a~~~~~~m~~~~~~p~ 271 (310)
. .|+...++.++.. ..|...++...++.|...++.|+
T Consensus 311 ~------------~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 311 R------------HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred h------------CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 1 3455555555544 25688888888888877665543
No 11
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.09 E-value=1.4e-08 Score=89.76 Aligned_cols=123 Identities=17% Similarity=0.166 Sum_probs=77.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHH
Q 021583 85 EFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDK 164 (310)
Q Consensus 85 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~ 164 (310)
+-+..+|.++|.++|+--..++|.+++++-.....+.+..+||.+|.+-.-.-+ .++..+|....+. ||..|||+
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~-Pnl~TfNa 278 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMT-PNLFTFNA 278 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcC-CchHhHHH
Confidence 335567777777777777777777777776666666666666666655442211 5566666666663 55556666
Q ss_pred HHHHHHHcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 021583 165 MISIYYNRGMHEK----MFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDK 212 (310)
Q Consensus 165 li~~~~~~g~~~~----a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 212 (310)
++.+.++.|+++. |.+++.+|++-|+.|...+|..+|..+++.++..+
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k 330 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQK 330 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchh
Confidence 6666666665544 34556666666666666666666666666655543
No 12
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.06 E-value=5.2e-08 Score=97.60 Aligned_cols=205 Identities=10% Similarity=-0.028 Sum_probs=140.9
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELW 146 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~ 146 (310)
+..+++..+++++.+.. +.+...|..+...|.+.|++++|...|+.+.+.. ..+...+..+...|.+.|++++|.++|
T Consensus 581 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 658 (899)
T TIGR02917 581 GQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSL 658 (899)
T ss_pred CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 45566677777776544 5567788888888888899999999888887653 345677888888888888888888888
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC---CCC
Q 021583 147 TKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKY---PPP 223 (310)
Q Consensus 147 ~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~---~p~ 223 (310)
+++.+.. +.+..+|..+...+...|++++|.++++.+.+.+ ..+...+..+...+...|++++|.+.|++. .|+
T Consensus 659 ~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 735 (899)
T TIGR02917 659 KRALELK--PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS 735 (899)
T ss_pred HHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC
Confidence 8888754 3445688888888888888888888888887765 345677777888888888888888888752 233
Q ss_pred ccchhe--------------------eccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhcCCCCCchhhhhhh
Q 021583 224 KWEYRY--------------------IKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNESSEEPEAAANLNES 278 (310)
Q Consensus 224 ~~~~~~--------------------~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 278 (310)
...+.. +. ...+.+...+..+... ..|++++|.+.++.+.... +.+...++.+
T Consensus 736 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l 810 (899)
T TIGR02917 736 SQNAIKLHRALLASGNTAEAVKTLEAWL-KTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNL 810 (899)
T ss_pred chHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 221110 00 0112234444444444 6777888887777776543 3344444443
No 13
>PF12854 PPR_1: PPR repeat
Probab=99.05 E-value=2.6e-10 Score=65.71 Aligned_cols=33 Identities=33% Similarity=0.497 Sum_probs=23.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 021583 118 GQGRTMGTYFLLLNALAEDGRLDEAEELWTKIF 150 (310)
Q Consensus 118 g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~ 150 (310)
|+.||.+|||+||++||+.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 666777777777777777777777777777663
No 14
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=1.6e-08 Score=89.37 Aligned_cols=217 Identities=12% Similarity=0.032 Sum_probs=152.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHCCC-------------------CCCHHHH
Q 021583 69 KEEVYGALDSFIAWELEFPLITVKKALKTLE---NEKDWKRIIQVTKWMLSKGQ-------------------GRTMGTY 126 (310)
Q Consensus 69 ~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~---~~~~~~~a~~~~~~m~~~g~-------------------~p~~~ty 126 (310)
+..+.=+++.|++.|+..+...-..|+..-+ .++-+-.-.+.|-.|.+.|- .-+..||
T Consensus 131 vKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT~et~ 210 (625)
T KOG4422|consen 131 VKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKTDETV 210 (625)
T ss_pred cchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCCchhH
Confidence 4444566778888888877665444444332 22222222344444444332 3467899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 021583 127 FLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQK 206 (310)
Q Consensus 127 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~ 206 (310)
.+||.|+|+-...+.|.+++++-.....+ ....+||.+|.+-.-.. ..++..+|....++||..|||+++++..+
T Consensus 211 s~mI~Gl~K~~~~ERA~~L~kE~~~~k~k-v~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~c~ak 285 (625)
T KOG4422|consen 211 SIMIAGLCKFSSLERARELYKEHRAAKGK-VYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALLSCAAK 285 (625)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhhe-eeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHHHHHHH
Confidence 99999999999999999999999988874 78889999998765433 38899999999999999999999999999
Q ss_pred cCCHHHHHHHHHhCCCCccchheeccCcccCChhhhhHhhhc--cCCCh-hhHHhhh----chhhcCCCCCchhhhhhhh
Q 021583 207 LGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKT-NEVETTK----NPNESSEEPEAAANLNESL 279 (310)
Q Consensus 207 ~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~-~~a~~~~----~~m~~~~~~p~~~~~~~ll 279 (310)
.|+++.|.+.+-+ +...|+.-|+.|...+|.-+|.. +.++. ..+..++ +.+..+...|-..+.|.-+
T Consensus 286 fg~F~~ar~aalq------il~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 286 FGKFEDARKAALQ------ILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred hcchHHHHHHHHH------HHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 9999987666433 24568888999999999988877 55554 3444554 4445566666555555444
Q ss_pred ----hhhh-hhhHHHHHHhhhc
Q 021583 280 ----EETE-ANTKELLEEADAI 296 (310)
Q Consensus 280 ----~~~~-~~~~~l~~~a~~~ 296 (310)
.-|. ...++|.++-+.+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~l 381 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGL 381 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHH
Confidence 2222 2566676666554
No 15
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.01 E-value=6.6e-08 Score=96.84 Aligned_cols=191 Identities=10% Similarity=0.024 Sum_probs=101.5
Q ss_pred cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 021583 68 VKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWT 147 (310)
Q Consensus 68 ~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~ 147 (310)
..+.+...++++.+.+ +.+...+..+...|.+.|++++|.++|+.+.+.. +.+..++..+...+...|++++|.++++
T Consensus 616 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 693 (899)
T TIGR02917 616 DLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAK 693 (899)
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444455555555433 2344555666666666666666666666655432 2335555666666666666666666666
Q ss_pred HHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC---CCCc
Q 021583 148 KIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKY---PPPK 224 (310)
Q Consensus 148 ~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~---~p~~ 224 (310)
.+.+.+. .+...|..+...|.+.|++++|.+.|+.+...+ |+..++..+..++.+.|++++|.+.++++ .|+.
T Consensus 694 ~~~~~~~--~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 769 (899)
T TIGR02917 694 SLQKQHP--KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPND 769 (899)
T ss_pred HHHhhCc--CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 6655542 233445555555556666666666665555432 33344444555555555555555554432 1111
Q ss_pred c-chh--------------------eeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhcC
Q 021583 225 W-EYR--------------------YIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNESS 266 (310)
Q Consensus 225 ~-~~~--------------------~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~~ 266 (310)
. .+. .+... .+.+...++.+... ..|+ ++|.+++++....
T Consensus 770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 770 AVLRTALAELYLAQKDYDKAIKHYRTVVKK-APDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 1 000 11111 13455666666665 7777 8899998877653
No 16
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.95 E-value=6.8e-09 Score=98.76 Aligned_cols=198 Identities=13% Similarity=0.029 Sum_probs=128.1
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------------------------CCCHHHHHHH
Q 021583 74 GALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQ------------------------GRTMGTYFLL 129 (310)
Q Consensus 74 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~------------------------~p~~~ty~~l 129 (310)
..+-.+...|+.|+.+||..+|.-||..|+.+.|- +|..|+-+.+ .|...||++|
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~L 89 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNL 89 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHH
Confidence 34557788899999999999999999999999988 8888874422 5677888899
Q ss_pred HHHHHhcCCHHH---HHHHHHHHHhc----CCCC----------------ChHH----------HHHHHHHHHHHcC---
Q 021583 130 LNALAEDGRLDE---AEELWTKIFLD----HLEG----------------TPRI----------FFDKMISIYYNRG--- 173 (310)
Q Consensus 130 l~~~~~~g~~~~---A~~~~~~m~~~----~~~~----------------~~~~----------~y~~li~~~~~~g--- 173 (310)
+.+|..+||+.- .++-+.....+ |... ++.. .|..++.-...+.
T Consensus 90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa 169 (1088)
T KOG4318|consen 90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSA 169 (1088)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 999999888654 33322222221 1110 0100 0222222221100
Q ss_pred --------------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCcccCCh
Q 021583 174 --------------MHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPA 239 (310)
Q Consensus 174 --------------~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~ 239 (310)
...-.+++.+..+.-.-.|+..+|.+++++-..+|++|.|..++. .|++.|+.++.
T Consensus 170 ~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~----------emke~gfpir~ 239 (1088)
T KOG4318|consen 170 WNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLY----------EMKEKGFPIRA 239 (1088)
T ss_pred ccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHH----------HHHHcCCCccc
Confidence 011122222222221124888888888888888899998888854 46677777776
Q ss_pred hhhhHhhhccCCChhhHHhhhchhhcCCCCCchhhhhhhhhhhh
Q 021583 240 KPKYELDSATEGKTNEVETTKNPNESSEEPEAAANLNESLEETE 283 (310)
Q Consensus 240 ~~~~~li~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 283 (310)
+-+-.|+-+ .++.+.++..+..|+..|+.|+..|+.-.+..+-
T Consensus 240 HyFwpLl~g-~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l 282 (1088)
T KOG4318|consen 240 HYFWPLLLG-INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQL 282 (1088)
T ss_pred ccchhhhhc-CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhh
Confidence 644444444 7788888888889999999998888877664333
No 17
>PF12854 PPR_1: PPR repeat
Probab=98.88 E-value=2.6e-09 Score=61.49 Aligned_cols=34 Identities=9% Similarity=-0.017 Sum_probs=32.3
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 021583 82 WELEFPLITVKKALKTLENEKDWKRIIQVTKWML 115 (310)
Q Consensus 82 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 115 (310)
+|++||..|||+||.+||+.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4899999999999999999999999999999984
No 18
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.83 E-value=2.1e-06 Score=71.60 Aligned_cols=144 Identities=8% Similarity=0.040 Sum_probs=84.3
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 021583 73 YGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLD 152 (310)
Q Consensus 73 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~ 152 (310)
...+++..+.. +.+...+..+...|...|++++|.+.++...+.. ..+...+..+...+...|++++|.+.|++..+.
T Consensus 51 ~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 128 (234)
T TIGR02521 51 KENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIED 128 (234)
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 45555544432 2335556666666666777777777776665442 234455666666666777777777777766654
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 153 HLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 153 ~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
...+.....+..+...|...|++++|.+.+.+..+.. +.+...+..+...+...|++++|...+++
T Consensus 129 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 194 (234)
T TIGR02521 129 PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLER 194 (234)
T ss_pred cccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2211222345556666666777777777776665432 11345566666666677777777666655
No 19
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.76 E-value=1.9e-08 Score=95.78 Aligned_cols=169 Identities=14% Similarity=0.071 Sum_probs=110.4
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChH------------------------HHHHH
Q 021583 109 QVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPR------------------------IFFDK 164 (310)
Q Consensus 109 ~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~------------------------~~y~~ 164 (310)
.++-.|+..|+.||.+||..+|.-||..|+++.|- +|.-|+-+.+ +.+. .||.+
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksL-pv~e~vf~~lv~sh~~And~Enpkep~aDtyt~ 88 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSL-PVREGVFRGLVASHKEANDAENPKEPLADTYTN 88 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccc-cccchhHHHHHhcccccccccCCCCCchhHHHH
Confidence 56778899999999999999999999999999998 8877775544 3222 36777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH-------CCCCCCHHHH--------------HHHHHHHHhcCCHHHHHHHHHhCC--
Q 021583 165 MISIYYNRGMHEKMFEIFADMEE-------LGVRPNVSIV--------------SMMGNAFQKLGMLDKYEKLKKKYP-- 221 (310)
Q Consensus 165 li~~~~~~g~~~~a~~l~~~m~~-------~g~~p~~~ty--------------~~li~~~~~~g~~~~a~~l~~~~~-- 221 (310)
|.++|...|+...-+.+=+.|.. .|+---..-| .+.+.-....|.++.+++++..+.
T Consensus 89 Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvs 168 (1088)
T KOG4318|consen 89 LLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVS 168 (1088)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 77777777765542222221221 2321111111 123333445566666666653321
Q ss_pred ------------------CCccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhcCCCCCchhhhhhhh
Q 021583 222 ------------------PPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNESSEEPEAAANLNESL 279 (310)
Q Consensus 222 ------------------p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 279 (310)
|-....+..+...-.++..++.+++++ .+|+.+.|..++.+|...|.+.+.-.|--|+
T Consensus 169 a~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl 246 (1088)
T KOG4318|consen 169 AWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLL 246 (1088)
T ss_pred cccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhh
Confidence 111111122222235889999999999 9999999999999999999998887777777
No 20
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.72 E-value=8e-06 Score=68.09 Aligned_cols=166 Identities=14% Similarity=0.095 Sum_probs=129.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 021583 87 PLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMI 166 (310)
Q Consensus 87 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li 166 (310)
....+..+...|...|++++|.+.++...+.. +.+...+..+...|...|++++|.+.+++..+..- .+...+..+.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~~ 106 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP--NNGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHH
Confidence 35677888899999999999999999987653 34567888899999999999999999999988653 3445788899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCcccCChhhhhHh
Q 021583 167 SIYYNRGMHEKMFEIFADMEELGVRP-NVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYEL 245 (310)
Q Consensus 167 ~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~l 245 (310)
..|...|++++|.+.++........| ....+..+..++...|++++|.+.+++..... +.+...+..+
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------~~~~~~~~~l 175 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-----------PQRPESLLEL 175 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------cCChHHHHHH
Confidence 99999999999999999998753333 34667788889999999999999987631100 1122333344
Q ss_pred hhc--cCCChhhHHhhhchhhcC
Q 021583 246 DSA--TEGKTNEVETTKNPNESS 266 (310)
Q Consensus 246 i~~--~~g~~~~a~~~~~~m~~~ 266 (310)
... ..|++++|.+.++.....
T Consensus 176 a~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 176 AELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 334 899999999999887654
No 21
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.63 E-value=5.8e-08 Score=56.09 Aligned_cols=34 Identities=29% Similarity=0.575 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 021583 161 FFDKMISIYYNRGMHEKMFEIFADMEELGVRPNV 194 (310)
Q Consensus 161 ~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~ 194 (310)
+||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6899999999999999999999999999998873
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.58 E-value=3.5e-05 Score=74.93 Aligned_cols=146 Identities=11% Similarity=0.004 Sum_probs=106.6
Q ss_pred CcHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFP-LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEEL 145 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~ 145 (310)
+..+.|...+++..+.. |+ ..+|..+...+...|++++|...|+...+.. .-+..+|..+...+...|++++|...
T Consensus 345 g~~~eA~~~~~kal~l~--P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 421 (615)
T TIGR00990 345 GKHLEALADLSKSIELD--PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKD 421 (615)
T ss_pred CCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44555566666655443 43 5567777777888888888888888876552 33467777788888888888888888
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 146 WTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRP-NVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 146 ~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
|++..+.. |.+...|..+-..+.+.|++++|+..|++..+. .| +...|+.+...+...|++++|.+.|++
T Consensus 422 ~~kal~l~--P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 492 (615)
T TIGR00990 422 YQKSIDLD--PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDT 492 (615)
T ss_pred HHHHHHcC--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 88887654 234456777888888888888888888887653 34 367788888888888888888888876
No 23
>PRK12370 invasion protein regulator; Provisional
Probab=98.58 E-value=1.5e-05 Score=76.35 Aligned_cols=149 Identities=10% Similarity=-0.088 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 021583 70 EEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKI 149 (310)
Q Consensus 70 ~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m 149 (310)
++|...+++..+.+ +-+..++..+-..+...|++++|...|+...+.+ +.+...+..+-..|...|++++|...+++.
T Consensus 321 ~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~A 398 (553)
T PRK12370 321 IKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINEC 398 (553)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 44556666655554 3357778888888889999999999999988764 334677888889999999999999999999
Q ss_pred HhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 021583 150 FLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPN-VSIVSMMGNAFQKLGMLDKYEKLKKKYPPP 223 (310)
Q Consensus 150 ~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~l~~~~~p~ 223 (310)
.+..- .+...+..+...+...|++++|...+++..+.. .|+ ...+..+..+|...|+.++|...++++.+.
T Consensus 399 l~l~P--~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 399 LKLDP--TRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred HhcCC--CChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 88753 332334445556777899999999999987653 353 455777888899999999999998875433
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.55 E-value=5.9e-05 Score=73.77 Aligned_cols=146 Identities=16% Similarity=0.117 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHH
Q 021583 69 KEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDE----AEE 144 (310)
Q Consensus 69 ~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~----A~~ 144 (310)
.++|...++.+.+..-.++...+..+...+.+.|++++|...|+...... .-+...+..+-..|...|+.++ |+.
T Consensus 193 ~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~ 271 (656)
T PRK15174 193 LPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAE 271 (656)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHH
Confidence 34445555555444322333344444556666677777777776666442 2345556666666667777664 566
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 145 LWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPN-VSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 145 ~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
.|++..+.. |.+...+..+...+.+.|++++|...+++..+. .|+ ...+..+..+|.+.|++++|...|++
T Consensus 272 ~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~ 343 (656)
T PRK15174 272 HWRHALQFN--SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQ 343 (656)
T ss_pred HHHHHHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666542 233346666777777777777777777766653 343 45555666667777777777776654
No 25
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.52 E-value=0.00014 Score=71.08 Aligned_cols=148 Identities=8% Similarity=0.011 Sum_probs=107.1
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELW 146 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~ 146 (310)
+..+.|...++++.... +-+...+..+...+.+.|++++|.+.++...+. -..+...+..+...+...|+.++|...+
T Consensus 90 g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l-~P~~~~a~~~la~~l~~~g~~~eA~~~~ 167 (656)
T PRK15174 90 SQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLA-FSGNSQIFALHLRTLVLMDKELQAISLA 167 (656)
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCChHHHHHHH
Confidence 56667788888877765 345667778888888889999999999888765 2334677788888888899999999988
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 147 TKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 147 ~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
+++....- .+...+..+ ..+.+.|++++|..+++.+....-.++...+..+..++...|++++|...+++
T Consensus 168 ~~~~~~~P--~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~ 237 (656)
T PRK15174 168 RTQAQEVP--PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGES 237 (656)
T ss_pred HHHHHhCC--CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88766543 222333333 34778888888888888877654334445556666778888888888888875
No 26
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.52 E-value=5.6e-05 Score=73.57 Aligned_cols=181 Identities=12% Similarity=0.012 Sum_probs=139.9
Q ss_pred cHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 021583 68 VKEEVYGALDSFIAWE-LEF-PLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRT-MGTYFLLLNALAEDGRLDEAEE 144 (310)
Q Consensus 68 ~~~~~~~~~~~m~~~~-~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~ty~~ll~~~~~~g~~~~A~~ 144 (310)
..+++...++...+.+ ..| ....|+.+-..+...|++++|...|+...+. .|+ ..+|..+...+...|++++|..
T Consensus 309 ~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 309 SYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 3556677788877654 334 4567888888889999999999999998765 354 5688889999999999999999
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 021583 145 LWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRP-NVSIVSMMGNAFQKLGMLDKYEKLKKKYPPP 223 (310)
Q Consensus 145 ~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~ 223 (310)
.|++..+.. +.+...|..+-..|...|++++|.+.|+...+. .| +...+..+...+.+.|++++|...|++....
T Consensus 387 ~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 462 (615)
T TIGR00990 387 DFDKALKLN--SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN 462 (615)
T ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999998764 344568999999999999999999999998774 45 4677888899999999999999998763110
Q ss_pred ccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhc
Q 021583 224 KWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNES 265 (310)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~ 265 (310)
.+.+...++.+-.. ..|++++|.+.++.-..
T Consensus 463 -----------~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 495 (615)
T TIGR00990 463 -----------FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE 495 (615)
T ss_pred -----------CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 01223344444444 78999999988876544
No 27
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.50 E-value=1e-06 Score=77.02 Aligned_cols=180 Identities=11% Similarity=0.035 Sum_probs=95.6
Q ss_pred cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 68 VKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSK-GQGRTMGTYFLLLNALAEDGRLDEAEELW 146 (310)
Q Consensus 68 ~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~ty~~ll~~~~~~g~~~~A~~~~ 146 (310)
..+++.+++.+..+. .++...+..++..+.+.++++++.++++..... ....+...|..+...+.+.|+.++|++++
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 344445555443332 245566777888888888888888888887643 34567778888888888889999999888
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccc
Q 021583 147 TKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWE 226 (310)
Q Consensus 147 ~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~ 226 (310)
++..+.. |.+....+.++..+...|+.+++.+++....+.. ..|...+..+..+|...|+.++|..+|++..
T Consensus 170 ~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~----- 241 (280)
T PF13429_consen 170 RKALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKAL----- 241 (280)
T ss_dssp HHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH-----
T ss_pred HHHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccc-----
Confidence 8888764 3445578888888888888888888888877654 3455667788888888889999888876621
Q ss_pred hheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchh
Q 021583 227 YRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPN 263 (310)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m 263 (310)
.. -+.|......+.+. ..|+.++|.++....
T Consensus 242 -~~-----~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 242 -KL-----NPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp -HH-----STT-HHHHHHHHHHHT---------------
T ss_pred -cc-----ccccccccccccccccccccccccccccccc
Confidence 00 02344455555566 788888887776543
No 28
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.47 E-value=2.8e-07 Score=52.90 Aligned_cols=33 Identities=21% Similarity=0.530 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 021583 160 IFFDKMISIYYNRGMHEKMFEIFADMEELGVRP 192 (310)
Q Consensus 160 ~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p 192 (310)
.+||++|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777776
No 29
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.37 E-value=7.6e-07 Score=51.24 Aligned_cols=33 Identities=18% Similarity=0.195 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 021583 90 TVKKALKTLENEKDWKRIIQVTKWMLSKGQGRT 122 (310)
Q Consensus 90 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 122 (310)
+||++|.+|++.|++++|.++|++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
No 30
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.34 E-value=5.5e-07 Score=50.46 Aligned_cols=29 Identities=34% Similarity=0.650 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 021583 161 FFDKMISIYYNRGMHEKMFEIFADMEELG 189 (310)
Q Consensus 161 ~y~~li~~~~~~g~~~~a~~l~~~m~~~g 189 (310)
+||+||++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 46666666666666666666666665554
No 31
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.33 E-value=8.9e-07 Score=50.78 Aligned_cols=32 Identities=19% Similarity=0.140 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 021583 90 TVKKALKTLENEKDWKRIIQVTKWMLSKGQGR 121 (310)
Q Consensus 90 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 121 (310)
+||.+|.+|++.|+++.|.++|++|++.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.32 E-value=1.2e-05 Score=70.33 Aligned_cols=148 Identities=15% Similarity=0.114 Sum_probs=104.6
Q ss_pred CcHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 021583 67 NVKEEVYGALDSFIAW-ELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGR-TMGTYFLLLNALAEDGRLDEAEE 144 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~g~~~~A~~ 144 (310)
+..+++.++++..... ..+.+...|..+...+.+.|+.++|.+.++...+. .| |....+.++..+...|+.+++.+
T Consensus 124 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~ 201 (280)
T PF13429_consen 124 GDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEARE 201 (280)
T ss_dssp T-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHH
Confidence 4455667777776653 34567788999999999999999999999998876 35 47788899999999999999999
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 145 LWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 145 ~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
+++...+..- .+...|..+-.+|...|+.++|...++...+.. +-|......+..++...|+.++|.++.++
T Consensus 202 ~l~~~~~~~~--~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 202 ALKRLLKAAP--DDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHHHH-H--TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT--------------
T ss_pred HHHHHHHHCc--CHHHHHHHHHHHhcccccccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence 9998887752 333578999999999999999999999987643 23788889999999999999999998765
No 33
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.32 E-value=9.7e-05 Score=68.87 Aligned_cols=177 Identities=18% Similarity=0.167 Sum_probs=105.2
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHH
Q 021583 83 ELEFP-LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRT-MGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRI 160 (310)
Q Consensus 83 ~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 160 (310)
.+.|+ .+.+..+-..|..+|.+|.|.+.|+...+. .|+ ...|+.|-+++-..|++.+|+.++.+..+-.- ...-
T Consensus 280 ~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p--~had 355 (966)
T KOG4626|consen 280 NLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCP--NHAD 355 (966)
T ss_pred hcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCC--ccHH
Confidence 44453 455666666677777777777777765544 344 46677777777777777777777776665532 1223
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHh---CCCCcc--------chh
Q 021583 161 FFDKMISIYYNRGMHEKMFEIFADMEELGVRPN-VSIVSMMGNAFQKLGMLDKYEKLKKK---YPPPKW--------EYR 228 (310)
Q Consensus 161 ~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~l~~~---~~p~~~--------~~~ 228 (310)
+.|.|-+.|...|.+++|..+|..-.+ +.|+ ...++.|...|-..|++++|...+++ ++|+-. +|.
T Consensus 356 am~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~k 433 (966)
T KOG4626|consen 356 AMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYK 433 (966)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHH
Confidence 566677777777777777777766554 4454 35666777777777777777776664 333321 111
Q ss_pred e-----------eccCcccCC-hhhhhHhhhc--cCCChhhHHhhhchhhc
Q 021583 229 Y-----------IKGKRVRIP-AKPKYELDSA--TEGKTNEVETTKNPNES 265 (310)
Q Consensus 229 ~-----------~~~~~~~~~-~~~~~~li~~--~~g~~~~a~~~~~~m~~ 265 (310)
. .+.-.+.|. ....+.|-+. ..|++++|...++.-+.
T Consensus 434 e~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 434 EMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 1 111111121 2233344444 78999999887765543
No 34
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.30 E-value=0.00015 Score=62.63 Aligned_cols=154 Identities=14% Similarity=0.133 Sum_probs=120.4
Q ss_pred HhcCCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC--HHHHHHHHHHHHhcCCH
Q 021583 63 KGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSK-GQGRT--MGTYFLLLNALAEDGRL 139 (310)
Q Consensus 63 ~~~~~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~--~~ty~~ll~~~~~~g~~ 139 (310)
-.+++.+++|.+.|-+|.+.. +-+..+--+|-+.|.+.|..|+|+++.+.+.++ +..-+ ..+.-.|-.-|...|-+
T Consensus 45 fLLs~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 45 FLLSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred HHhhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhh
Confidence 445677888999999998854 345566678888899999999999999998865 22222 22334466778899999
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHH
Q 021583 140 DEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNV----SIVSMMGNAFQKLGMLDKYEK 215 (310)
Q Consensus 140 ~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~----~ty~~li~~~~~~g~~~~a~~ 215 (310)
|.|+.+|..+.+.+- .-...--.|+.-|-...+|++|+++-+++.+.+-.+.. ..|.-|...+....++|.|..
T Consensus 124 DRAE~~f~~L~de~e--fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~ 201 (389)
T COG2956 124 DRAEDIFNQLVDEGE--FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARE 201 (389)
T ss_pred hHHHHHHHHHhcchh--hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 999999999998665 22346888999999999999999999999887655542 567777777778899999998
Q ss_pred HHHh
Q 021583 216 LKKK 219 (310)
Q Consensus 216 l~~~ 219 (310)
++++
T Consensus 202 ~l~k 205 (389)
T COG2956 202 LLKK 205 (389)
T ss_pred HHHH
Confidence 8865
No 35
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.28 E-value=3.9e-05 Score=71.59 Aligned_cols=216 Identities=11% Similarity=0.051 Sum_probs=144.2
Q ss_pred CchHHHHHH-HhcCcCchHhHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-
Q 021583 39 YPRVWKARK-RIGTISKSAKLVTCIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLS- 116 (310)
Q Consensus 39 ~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~- 116 (310)
.+.+-.... +...+...+.+.+|+..+. +|..++++......+--..+++.|-..|++.|++++|...++...+
T Consensus 237 hl~va~~l~~~a~~y~~~~k~~eAv~ly~----~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I 312 (508)
T KOG1840|consen 237 HLVVASMLNILALVYRSLGKYDEAVNLYE----EALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI 312 (508)
T ss_pred CHHHHHHHHHHHHHHHHhccHHHHHHHHH----HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 344444444 2223555566666644443 3444444444444333356788888999999999998888876432
Q ss_pred --C--C-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCChH-HHHHHHHHHHHHcCCHHHHHHHHHH
Q 021583 117 --K--G-QGRTM-GTYFLLLNALAEDGRLDEAEELWTKIFLD-----HLEGTPR-IFFDKMISIYYNRGMHEKMFEIFAD 184 (310)
Q Consensus 117 --~--g-~~p~~-~ty~~ll~~~~~~g~~~~A~~~~~~m~~~-----~~~~~~~-~~y~~li~~~~~~g~~~~a~~l~~~ 184 (310)
. | ..|.+ ..++.+...|+..+++++|..++.+..+. |...+.. -+|+.|-..|-..|++++|+++++.
T Consensus 313 ~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ 392 (508)
T KOG1840|consen 313 YEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKK 392 (508)
T ss_pred HHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 2 2 12333 44566788889999999999998765543 2211122 2899999999999999999999998
Q ss_pred HHHC----C--CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCcc--cCChhhhhHhhhc--cCCCh
Q 021583 185 MEEL----G--VRPN-VSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRV--RIPAKPKYELDSA--TEGKT 253 (310)
Q Consensus 185 m~~~----g--~~p~-~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~--~~~~~~~~~li~~--~~g~~ 253 (310)
.... + ..+. ...++.|-..|.+.+..++|.++|.+.. +.++..|. +....+|..|... +.|++
T Consensus 393 ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~------~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~ 466 (508)
T KOG1840|consen 393 AIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAK------DIMKLCGPDHPDVTYTYLNLAALYRAQGNY 466 (508)
T ss_pred HHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHH------HHHHHhCCCCCchHHHHHHHHHHHHHcccH
Confidence 7532 1 2233 4778999999999999999999997721 11122222 3345677777777 99999
Q ss_pred hhHHhhhchhh
Q 021583 254 NEVETTKNPNE 264 (310)
Q Consensus 254 ~~a~~~~~~m~ 264 (310)
+.|+++.....
T Consensus 467 e~a~~~~~~~~ 477 (508)
T KOG1840|consen 467 EAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHH
Confidence 99999886554
No 36
>PRK12370 invasion protein regulator; Provisional
Probab=98.26 E-value=0.00045 Score=66.36 Aligned_cols=179 Identities=7% Similarity=-0.108 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH---------hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 021583 70 EEVYGALDSFIAWELEFP-LITVKKALKTLE---------NEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRL 139 (310)
Q Consensus 70 ~~~~~~~~~m~~~~~~p~-~~~~~~li~~~~---------~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~ 139 (310)
+.|...+++..+.. |+ ...|..+-.+|. ..+++++|...++...+.. +-+..++..+-..+...|++
T Consensus 278 ~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 278 QQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCH
Confidence 45667777666544 43 445555554443 2345889999999887663 34677888888889999999
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHH
Q 021583 140 DEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNV-SIVSMMGNAFQKLGMLDKYEKLKK 218 (310)
Q Consensus 140 ~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~a~~l~~ 218 (310)
++|...|++..+.+ |.+...|..+-..|...|++++|...++...+. .|+. ..+..+...+...|++++|...++
T Consensus 355 ~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 355 IVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999998875 344457888999999999999999999998875 3542 233344555677899999999986
Q ss_pred hCCCCccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhc
Q 021583 219 KYPPPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNES 265 (310)
Q Consensus 219 ~~~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~ 265 (310)
+.. ....+-+...+..+-.. ..|+.++|...+.+...
T Consensus 431 ~~l----------~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 431 ELR----------SQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred HHH----------HhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 631 00000111122222222 78999999999877643
No 37
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.24 E-value=0.00034 Score=69.84 Aligned_cols=186 Identities=8% Similarity=-0.062 Sum_probs=127.8
Q ss_pred CcHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHH
Q 021583 67 NVKEEVYGALDSFIAWELE-FPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGR---TMGTYFLLLNALAEDGRLDEA 142 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~ty~~ll~~~~~~g~~~~A 142 (310)
+..++|...++++.+.+-+ |+.. -..+...|...|++++|..+|+......-.. ....+..|..++...|++++|
T Consensus 251 g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA 329 (765)
T PRK10049 251 DRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGA 329 (765)
T ss_pred hhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHH
Confidence 3455667888888776532 3321 1224668888999999999999877543111 135567777788999999999
Q ss_pred HHHHHHHHhcCC----------CCCh-H--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 021583 143 EELWTKIFLDHL----------EGTP-R--IFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGM 209 (310)
Q Consensus 143 ~~~~~~m~~~~~----------~~~~-~--~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~ 209 (310)
.+.++++.+..- ..++ . ..+..+...+...|+.++|+++++++.... +-+...+..+...+...|+
T Consensus 330 ~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~ 408 (765)
T PRK10049 330 LTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGW 408 (765)
T ss_pred HHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 999998887531 0111 1 245667778888999999999999987642 2246788888889999999
Q ss_pred HHHHHHHHHh---CCCCccchheeccCcccCChhhhhHhhhccCCChhhHHhhhchhhcC
Q 021583 210 LDKYEKLKKK---YPPPKWEYRYIKGKRVRIPAKPKYELDSATEGKTNEVETTKNPNESS 266 (310)
Q Consensus 210 ~~~a~~l~~~---~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~g~~~~a~~~~~~m~~~ 266 (310)
.++|++.+++ ..|+. +......++..-..|++++|+..++.+...
T Consensus 409 ~~~A~~~l~~al~l~Pd~------------~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 409 PRAAENELKKAEVLEPRN------------INLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHHHhhCCCC------------hHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999876 23441 222223333222788999999999888663
No 38
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.24 E-value=0.00073 Score=68.65 Aligned_cols=141 Identities=6% Similarity=-0.048 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 021583 71 EVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIF 150 (310)
Q Consensus 71 ~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~ 150 (310)
++...+.+..... |+......+...+.+.|++++|...|+.+... .|+...+..+...+.+.|+.++|.+.+++..
T Consensus 494 eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL 569 (987)
T PRK09782 494 VALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAE 569 (987)
T ss_pred HHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444444433322 44333333334445677777777777765433 3344445555666667777777777777766
Q ss_pred hcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 151 LDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 151 ~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
+..- .....+..+...+.+.|++++|...+++..+. .|+...|..+..++.+.|+.++|...+++
T Consensus 570 ~l~P--~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~ 634 (987)
T PRK09782 570 QRGL--GDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRA 634 (987)
T ss_pred hcCC--ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6532 22222333333334457777777777766543 35666666777777777777777777654
No 39
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.24 E-value=1.1e-06 Score=49.13 Aligned_cols=30 Identities=23% Similarity=0.399 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 021583 125 TYFLLLNALAEDGRLDEAEELWTKIFLDHL 154 (310)
Q Consensus 125 ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~ 154 (310)
||++||++|++.|++++|.++|++|++.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 567777777777777777777777766653
No 40
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.21 E-value=0.00022 Score=61.62 Aligned_cols=204 Identities=12% Similarity=0.132 Sum_probs=140.1
Q ss_pred cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHH
Q 021583 68 VKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRT----MGTYFLLLNALAEDGRLDEAE 143 (310)
Q Consensus 68 ~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~ty~~ll~~~~~~g~~~~A~ 143 (310)
..++|..+|..+.+.+ ..-..+...|+..|-+..+|++|.++-..+.+.+-++. ...|+-|-..+....+++.|.
T Consensus 122 l~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 122 LLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred hhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence 3444578888777755 34466788999999999999999999998887765554 345667778888889999999
Q ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 021583 144 ELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPP 223 (310)
Q Consensus 144 ~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~ 223 (310)
..+++-.+.+- ..+..--.+=+.+...|+++.|.+.++...+.+...-..+...|..||...|+.++...++.++...
T Consensus 201 ~~l~kAlqa~~--~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 201 ELLKKALQADK--KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHHhhCc--cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 99998887653 2222333444567789999999999999998876655688899999999999999998887663211
Q ss_pred ccchheeccCcccCChhhhhHhhhccCCChhhHHhhhchhhcCCCCCchhhhhhhhhhhhhhh
Q 021583 224 KWEYRYIKGKRVRIPAKPKYELDSATEGKTNEVETTKNPNESSEEPEAAANLNESLEETEANT 286 (310)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~li~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 286 (310)
+ .|..+-..++ -+++...|. +.|..++.+-... .|+...|..++...-+++
T Consensus 279 ---~-----~g~~~~l~l~-~lie~~~G~-~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~da 329 (389)
T COG2956 279 ---N-----TGADAELMLA-DLIELQEGI-DAAQAYLTRQLRR--KPTMRGFHRLMDYHLADA 329 (389)
T ss_pred ---c-----CCccHHHHHH-HHHHHhhCh-HHHHHHHHHHHhh--CCcHHHHHHHHHhhhccc
Confidence 0 0111111111 223333343 3444444443333 389999999985554433
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.21 E-value=0.00046 Score=63.46 Aligned_cols=210 Identities=8% Similarity=-0.041 Sum_probs=124.0
Q ss_pred hcCCcHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 021583 64 GLSNVKEEVYGALDSFIAWELEFPLI--TVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDE 141 (310)
Q Consensus 64 ~~~~~~~~~~~~~~~m~~~~~~p~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~ 141 (310)
.-.+..+.+...+.++.+.. |+.. ..-.....+...|+++.|...++...+.. +-+...+..+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 34466777788888776543 4332 22233567788889999999888887664 4456788888888888899999
Q ss_pred HHHHHHHHHhcCCCCChH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 021583 142 AEELWTKIFLDHLEGTPR------IFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEK 215 (310)
Q Consensus 142 A~~~~~~m~~~~~~~~~~------~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ 215 (310)
|.+++..+.+.+...+.. .+|..++.-.....+.+...++++.+.+. .+.+......+..++...|+.++|.+
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 998888888776532221 13334444444444445555555554322 12345555666666666666666666
Q ss_pred HHHhC---CCCcc---chheeccC--------------cccCChhhhhHhhhc--cCCChhhHHhhhchhhcCCCCCchh
Q 021583 216 LKKKY---PPPKW---EYRYIKGK--------------RVRIPAKPKYELDSA--TEGKTNEVETTKNPNESSEEPEAAA 273 (310)
Q Consensus 216 l~~~~---~p~~~---~~~~~~~~--------------~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~~~~~p~~~ 273 (310)
++++. .++.. .|..+... ..+.|.....++-.. +.|++++|.+.++...... |+..
T Consensus 285 ~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~--P~~~ 362 (398)
T PRK10747 285 IILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR--PDAY 362 (398)
T ss_pred HHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHH
Confidence 66541 11111 11111110 112233333333333 8999999999999887654 6666
Q ss_pred hhhhhh
Q 021583 274 NLNESL 279 (310)
Q Consensus 274 ~~~~ll 279 (310)
.+-.+-
T Consensus 363 ~~~~La 368 (398)
T PRK10747 363 DYAWLA 368 (398)
T ss_pred HHHHHH
Confidence 644333
No 42
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.20 E-value=0.00036 Score=70.83 Aligned_cols=178 Identities=12% Similarity=0.020 Sum_probs=129.1
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELW 146 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~ 146 (310)
+..+.|...++++... +|+...+..+...+.+.|+++.|...|+...+.. ..+...+..+...+.+.|++++|...+
T Consensus 523 Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~ 599 (987)
T PRK09782 523 EDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDL 599 (987)
T ss_pred CCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4566667777765443 4445556677788889999999999999888664 223333334444555669999999999
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHh---CCC
Q 021583 147 TKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPN-VSIVSMMGNAFQKLGMLDKYEKLKKK---YPP 222 (310)
Q Consensus 147 ~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~l~~~---~~p 222 (310)
++..+.. |+...|..+-..+.+.|+.++|+..++...+. .|+ ...++.+-.++...|+.++|..++++ ..|
T Consensus 600 ~~AL~l~---P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P 674 (987)
T PRK09782 600 TRSLNIA---PSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP 674 (987)
T ss_pred HHHHHhC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 9988764 34557889999999999999999999998774 464 57788888899999999999999875 233
Q ss_pred CccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhcC
Q 021583 223 PKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNESS 266 (310)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~~ 266 (310)
+ +...+..+-.+ ..|+.++|+..++.....
T Consensus 675 ~--------------~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 675 D--------------DPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred C--------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3 23333344444 889999999888777543
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.17 E-value=0.0023 Score=58.93 Aligned_cols=193 Identities=8% Similarity=-0.040 Sum_probs=130.7
Q ss_pred HHHHHHh-cCCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHH
Q 021583 58 LVTCIKG-LSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYF--LLLNALA 134 (310)
Q Consensus 58 ~~~~l~~-~~~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~--~ll~~~~ 134 (310)
+.+.+.. ..+..+.+.+.+..-.+..-. ....|........+.|+++.|.+.+.++.+. .|+...+. .....+.
T Consensus 88 ~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l 164 (398)
T PRK10747 88 TEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQL 164 (398)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHH
Confidence 3344433 347777777766654443211 2333444445557899999999999999865 46654333 4467888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhc
Q 021583 135 EDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNV-------SIVSMMGNAFQKL 207 (310)
Q Consensus 135 ~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~-------~ty~~li~~~~~~ 207 (310)
..|+.++|.+.++++.+.. |.+......+...|.+.|++++|.+++..+.+.+..++. .+|..++......
T Consensus 165 ~~g~~~~Al~~l~~~~~~~--P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~ 242 (398)
T PRK10747 165 ARNENHAARHGVDKLLEVA--PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD 242 (398)
T ss_pred HCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998876 345568999999999999999999999999988766433 2444555555556
Q ss_pred CCHHHHHHHHHhCCCCccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhcC
Q 021583 208 GMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNESS 266 (310)
Q Consensus 208 g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~~ 266 (310)
.+.+...++++.+... .+.+......+... ..|+.++|++.+......
T Consensus 243 ~~~~~l~~~w~~lp~~-----------~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~ 292 (398)
T PRK10747 243 QGSEGLKRWWKNQSRK-----------TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR 292 (398)
T ss_pred cCHHHHHHHHHhCCHH-----------HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 6667777777664311 12234444445555 778888888887766653
No 44
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.14 E-value=7.9e-05 Score=54.51 Aligned_cols=80 Identities=11% Similarity=0.197 Sum_probs=48.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHCCCCCCHHHHH
Q 021583 127 FLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRG--------MHEKMFEIFADMEELGVRPNVSIVS 198 (310)
Q Consensus 127 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g--------~~~~a~~l~~~m~~~g~~p~~~ty~ 198 (310)
...|..+...+++...-.+|+.+++.|+..|+..+||.++.+.++.. ++-+++.+|.+|...+++|+..||+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 33444444445555555555555555553233345555555555432 2344667788888888888888888
Q ss_pred HHHHHHHh
Q 021583 199 MMGNAFQK 206 (310)
Q Consensus 199 ~li~~~~~ 206 (310)
.++.++.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88887765
No 45
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.12 E-value=5.9e-05 Score=70.27 Aligned_cols=146 Identities=14% Similarity=0.182 Sum_probs=121.2
Q ss_pred CcHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFP-LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEEL 145 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~ 145 (310)
+..+-|...+++..+. +|+ ...||.|.+++-..|+..+|.+.|....... ..-..+.+.|-+.|...|.+++|..+
T Consensus 300 G~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~l 376 (966)
T KOG4626|consen 300 GLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRL 376 (966)
T ss_pred ccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHH
Confidence 4566677777765554 455 6789999999999999999999999877552 23357889999999999999999999
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 146 WTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNV-SIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 146 ~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
|..-.+-.- .=...+|.|-..|-+.|+.++|...|++..+ ++|+. ..|+.+-..|-..|+++.|.+.+.+
T Consensus 377 y~~al~v~p--~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~r 447 (966)
T KOG4626|consen 377 YLKALEVFP--EFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTR 447 (966)
T ss_pred HHHHHhhCh--hhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHH
Confidence 998876532 2234899999999999999999999999765 78884 8899999999999999999999987
No 46
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.10 E-value=0.00014 Score=66.51 Aligned_cols=127 Identities=13% Similarity=0.063 Sum_probs=108.7
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 021583 80 IAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSK--GQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGT 157 (310)
Q Consensus 80 ~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~ 157 (310)
...+.+.+...+..+++.+....+.+.+..++...+.. ....-..|..++|+.|.+.|..++++++++.=...|+ -+
T Consensus 58 ~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGi-F~ 136 (429)
T PF10037_consen 58 FERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGI-FP 136 (429)
T ss_pred HhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhccc-CC
Confidence 34566778888889999999988999999999998855 3333445667999999999999999999999999999 48
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 021583 158 PRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKL 207 (310)
Q Consensus 158 ~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 207 (310)
|..+||.||..+.+.|++..|.++..+|...+...+..|+..-+.+|.+.
T Consensus 137 D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 137 DNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred ChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88899999999999999999999999998887778888888888887776
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.09 E-value=0.0013 Score=60.68 Aligned_cols=179 Identities=11% Similarity=0.016 Sum_probs=84.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHH-HHHHHH---H
Q 021583 95 LKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFD-KMISIY---Y 170 (310)
Q Consensus 95 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~-~li~~~---~ 170 (310)
...+...|+++.|.+.++.+.+.. +-+..+...+...|...|++++|.+++..+.+.+.. .+ ..+. .-..++ .
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~-~~~~~l~~~a~~~~l 236 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DD-EEFADLEQKAEIGLL 236 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CH-HHHHHHHHHHHHHHH
Confidence 444445555555555555555442 223344555555555555555555555555555431 11 1111 001111 1
Q ss_pred HcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC---CCCccc-----hh---eecc----
Q 021583 171 NRGMHEKMFEIFADMEELG---VRPNVSIVSMMGNAFQKLGMLDKYEKLKKKY---PPPKWE-----YR---YIKG---- 232 (310)
Q Consensus 171 ~~g~~~~a~~l~~~m~~~g---~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~---~p~~~~-----~~---~~~~---- 232 (310)
..+..+++.+.+..+.+.. .+.+...+..+...+...|+.++|.+++++. .|+... +. .+..
T Consensus 237 ~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~ 316 (409)
T TIGR00540 237 DEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNE 316 (409)
T ss_pred HHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChH
Confidence 1111122222222222211 1125666777778888899999999988762 344431 11 1110
Q ss_pred ---------CcccCC-h--hhhhHhhhc--cCCChhhHHhhhchhhcCCCCCchhhhh
Q 021583 233 ---------KRVRIP-A--KPKYELDSA--TEGKTNEVETTKNPNESSEEPEAAANLN 276 (310)
Q Consensus 233 ---------~~~~~~-~--~~~~~li~~--~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 276 (310)
....|+ . ....++-.. +.|++++|.++++.-......|+...+.
T Consensus 317 ~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~ 374 (409)
T TIGR00540 317 KLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA 374 (409)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH
Confidence 011222 2 222222222 8899999999998533333345444333
No 48
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.09 E-value=0.0036 Score=55.61 Aligned_cols=215 Identities=12% Similarity=0.080 Sum_probs=142.2
Q ss_pred HHHHH-HhcCCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 021583 58 LVTCI-KGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAED 136 (310)
Q Consensus 58 ~~~~l-~~~~~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~ 136 (310)
..+++ +...+...+|.+.+.+..+.+- -....|.....+--+.|+.+.+..++.+..+.--.++...+-+........
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~ 166 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR 166 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence 33443 4455777778888877666663 335567777777788899999999888877664456667777777777777
Q ss_pred CCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-------------------------
Q 021583 137 GRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVR------------------------- 191 (310)
Q Consensus 137 g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~------------------------- 191 (310)
|+.+.|..-.+++.+.+- .+...-.....+|.+.|++.....++..|.+.|.-
T Consensus 167 ~d~~aA~~~v~~ll~~~p--r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~ 244 (400)
T COG3071 167 RDYPAARENVDQLLEMTP--RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG 244 (400)
T ss_pred CCchhHHHHHHHHHHhCc--CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777777777777653 34456777777777777777777777777766622
Q ss_pred ----------------CCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchh----------------------eeccC
Q 021583 192 ----------------PNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYR----------------------YIKGK 233 (310)
Q Consensus 192 ----------------p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~----------------------~~~~~ 233 (310)
-+...-.+++.-+..+|+.++|.++.++..+..+.-+ .++..
T Consensus 245 ~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h 324 (400)
T COG3071 245 SEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQH 324 (400)
T ss_pred chHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhC
Confidence 2233334566667788888888888764211111111 22223
Q ss_pred cccCChhhhhHhhhc--cCCChhhHHhhhchhhcCCCCCchhhhhhhh
Q 021583 234 RVRIPAKPKYELDSA--TEGKTNEVETTKNPNESSEEPEAAANLNESL 279 (310)
Q Consensus 234 ~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 279 (310)
+..| ..+.+|-.- +.+.|.+|.++++.-... .|+..+++.+=
T Consensus 325 ~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la 368 (400)
T COG3071 325 PEDP--LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELA 368 (400)
T ss_pred CCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHH
Confidence 3333 444444444 899999999999955544 48888888876
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.07 E-value=0.0035 Score=57.90 Aligned_cols=187 Identities=12% Similarity=0.004 Sum_probs=123.6
Q ss_pred HhcCCcHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCH
Q 021583 63 KGLSNVKEEVYGALDSFIAWELEFP-LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTM--GTYFLLLNALAEDGRL 139 (310)
Q Consensus 63 ~~~~~~~~~~~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~ty~~ll~~~~~~g~~ 139 (310)
....+..+.|.+.+.+..+. .|+ ...+-.......+.|+++.|.+.+....+.. |+. ..--+....+...|+.
T Consensus 94 a~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~ 169 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNEL 169 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCH
Confidence 44457777888887765554 344 4445555677788899999999999987553 443 3444468888899999
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---H----hcCCHHH
Q 021583 140 DEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAF---Q----KLGMLDK 212 (310)
Q Consensus 140 ~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~---~----~~g~~~~ 212 (310)
++|.+.++++.+.. |.+...+..+...|...|++++|.+++..+.+.++.+.......-..++ . .....+.
T Consensus 170 ~~Al~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~ 247 (409)
T TIGR00540 170 HAARHGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDG 247 (409)
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999999986 3444678899999999999999999999999987653332211111211 2 2222334
Q ss_pred HHHHHHhCCCCccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhcC
Q 021583 213 YEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNESS 266 (310)
Q Consensus 213 a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~~ 266 (310)
..++++... . ..+.+...+..+... ..|+.++|.+.+++....
T Consensus 248 L~~~~~~~p-~----------~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~ 292 (409)
T TIGR00540 248 LLNWWKNQP-R----------HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK 292 (409)
T ss_pred HHHHHHHCC-H----------HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Confidence 444443321 0 001244444445555 777788888777766554
No 50
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.06 E-value=0.00049 Score=64.36 Aligned_cols=207 Identities=20% Similarity=0.200 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhc-----CCC
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSK-----GQ-GRTMGTY-FLLLNALAEDGRLDEAEELWTKIFLD-----HLE 155 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~-~p~~~ty-~~ll~~~~~~g~~~~A~~~~~~m~~~-----~~~ 155 (310)
..++..|...|...|+++.|..++++-... |. .|.+.+. +.+-..|...+++++|..+|+++... |-.
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 457777999999999999999999986533 32 2344333 33667888999999999999988754 332
Q ss_pred CChH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH---C--CCC-CCH-HHHHHHHHHHHhcCCHHHHHHHHHhCCCCccch
Q 021583 156 GTPR-IFFDKMISIYYNRGMHEKMFEIFADMEE---L--GVR-PNV-SIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEY 227 (310)
Q Consensus 156 ~~~~-~~y~~li~~~~~~g~~~~a~~l~~~m~~---~--g~~-p~~-~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~ 227 (310)
++.+ .+++.|-..|++.|++++|...+++-.+ + |.. |+. .-++.+...|+..+++++|..++++ ....|
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~---al~i~ 355 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQK---ALKIY 355 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHH---HHHHH
Confidence 2333 3899999999999999999988877542 1 222 232 5567777889999999999999875 22222
Q ss_pred heeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhc----CC---CCCchhhhhhhhhhhhh-----hhHHHHHHh
Q 021583 228 RYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNES----SE---EPEAAANLNESLEETEA-----NTKELLEEA 293 (310)
Q Consensus 228 ~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~----~~---~~p~~~~~~~ll~~~~~-----~~~~l~~~a 293 (310)
....+..-..-..+++.|-+. ..|++++|++++..... .+ ..-....+|.+=..... ++.++..++
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 211111111234456666666 89999999999965432 11 11112223333322222 566777777
Q ss_pred hhcc
Q 021583 294 DAIS 297 (310)
Q Consensus 294 ~~~~ 297 (310)
-.|.
T Consensus 436 ~~i~ 439 (508)
T KOG1840|consen 436 KDIM 439 (508)
T ss_pred HHHH
Confidence 7765
No 51
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.02 E-value=0.0011 Score=56.22 Aligned_cols=147 Identities=12% Similarity=0.058 Sum_probs=103.2
Q ss_pred HHHHHHHHHHcCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCH-HHHHHHHHHHHhc--------CCH
Q 021583 72 VYGALDSFIAWEL-EF-PLITVKKALKTLENEKDWKRIIQVTKWMLSKG-QGRTM-GTYFLLLNALAED--------GRL 139 (310)
Q Consensus 72 ~~~~~~~m~~~~~-~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~-~ty~~ll~~~~~~--------g~~ 139 (310)
+...+++.....- .| ...++..+...|.+.|+++.|...++.+.+.. -.|.. .++..+-..+... |+.
T Consensus 52 A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~ 131 (235)
T TIGR03302 52 AIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAA 131 (235)
T ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHH
Confidence 3666666655431 11 23467788899999999999999999988542 12221 2444444455543 778
Q ss_pred HHHHHHHHHHHhcCCCCChHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHH
Q 021583 140 DEAEELWTKIFLDHLEGTPRIFF-----------------DKMISIYYNRGMHEKMFEIFADMEELGV-RP-NVSIVSMM 200 (310)
Q Consensus 140 ~~A~~~~~~m~~~~~~~~~~~~y-----------------~~li~~~~~~g~~~~a~~l~~~m~~~g~-~p-~~~ty~~l 200 (310)
++|.+.|++..+..-. +...+ -.+-..|.+.|++++|...++......- .| ....+..+
T Consensus 132 ~~A~~~~~~~~~~~p~--~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l 209 (235)
T TIGR03302 132 REAFEAFQELIRRYPN--SEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARL 209 (235)
T ss_pred HHHHHHHHHHHHHCCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHH
Confidence 9999999999877432 21122 1345567889999999999999886521 23 35788899
Q ss_pred HHHHHhcCCHHHHHHHHHhC
Q 021583 201 GNAFQKLGMLDKYEKLKKKY 220 (310)
Q Consensus 201 i~~~~~~g~~~~a~~l~~~~ 220 (310)
..++...|+.++|...++.+
T Consensus 210 ~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 210 VEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999988764
No 52
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.02 E-value=0.0027 Score=66.42 Aligned_cols=146 Identities=10% Similarity=0.017 Sum_probs=98.7
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHH------------HHHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQG-RTMGTYF------------LLLNAL 133 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~ty~------------~ll~~~ 133 (310)
+..+.|...+++..+.. +-+...+..+-..|.+.|++++|...|+...+..-. +....+. .+-..+
T Consensus 283 g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~ 361 (1157)
T PRK11447 283 GQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA 361 (1157)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence 55667788888777654 336778888889999999999999999987754321 1211121 123456
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 021583 134 AEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPN-VSIVSMMGNAFQKLGMLDK 212 (310)
Q Consensus 134 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~ 212 (310)
.+.|++++|++.|++..+.. |.+...+..+-..|...|++++|++.|++..+. .|+ ...+..+...|. .++.++
T Consensus 362 ~~~g~~~eA~~~~~~Al~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~~-~~~~~~ 436 (1157)
T PRK11447 362 LKANNLAQAERLYQQARQVD--NTDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLYR-QQSPEK 436 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH-hcCHHH
Confidence 78899999999999888764 344457778888899999999999999988764 243 444444444442 233444
Q ss_pred HHHHHH
Q 021583 213 YEKLKK 218 (310)
Q Consensus 213 a~~l~~ 218 (310)
|..+++
T Consensus 437 A~~~l~ 442 (1157)
T PRK11447 437 ALAFIA 442 (1157)
T ss_pred HHHHHH
Confidence 444443
No 53
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.00 E-value=0.0013 Score=65.63 Aligned_cols=186 Identities=9% Similarity=-0.011 Sum_probs=138.4
Q ss_pred cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHH
Q 021583 68 VKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKG-----QGRTMGTYFLLLNALAEDGRLDEA 142 (310)
Q Consensus 68 ~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-----~~p~~~ty~~ll~~~~~~g~~~~A 142 (310)
...+|.+.++.+...+.+....+--.+..+|...+++++|..+|....... ..++......|..+|...+++++|
T Consensus 307 r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A 386 (822)
T PRK14574 307 QTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKA 386 (822)
T ss_pred hHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHH
Confidence 344567888889888877667788899999999999999999999987542 234555578899999999999999
Q ss_pred HHHHHHHHhcCC----------C-C-ChHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 021583 143 EELWTKIFLDHL----------E-G-TPRI-FFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGM 209 (310)
Q Consensus 143 ~~~~~~m~~~~~----------~-~-~~~~-~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~ 209 (310)
..+++++.+..- + + ++-. .+..++..+...|+..+|+++++++.... +-|......+.+.+...|.
T Consensus 387 ~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~ 465 (822)
T PRK14574 387 YQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDL 465 (822)
T ss_pred HHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 999999987310 0 0 1111 35556778889999999999999997642 3378889999999999999
Q ss_pred HHHHHHHHHhCCCCccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhc
Q 021583 210 LDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNES 265 (310)
Q Consensus 210 ~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~ 265 (310)
.++|++.++...-. -+.+..+......+ ..|++.+|+..++....
T Consensus 466 p~~A~~~~k~a~~l-----------~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 466 PRKAEQELKAVESL-----------APRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHHHHhhh-----------CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 99999998652100 02223333334444 78999999988876644
No 54
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.94 E-value=0.0035 Score=62.58 Aligned_cols=197 Identities=11% Similarity=0.086 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHH-cCCCCC-HH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 021583 70 EEVYGALDSFIA-WELEFP-LI----TVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAE 143 (310)
Q Consensus 70 ~~~~~~~~~m~~-~~~~p~-~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~ 143 (310)
+.+..-++.+.. .+-.|. .. ..-=.+-++.+.|+++++.+.|+.+...|.+...++-..+.++|...+++++|+
T Consensus 268 d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~ 347 (822)
T PRK14574 268 DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAA 347 (822)
T ss_pred HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 445666666554 233242 22 222346677889999999999999999998877789999999999999999999
Q ss_pred HHHHHHHhcCCC----CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-----------CCC--H-HHHHHHHHHHH
Q 021583 144 ELWTKIFLDHLE----GTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGV-----------RPN--V-SIVSMMGNAFQ 205 (310)
Q Consensus 144 ~~~~~m~~~~~~----~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~-----------~p~--~-~ty~~li~~~~ 205 (310)
.+++++...... +++......|..+|...+++++|..+++.+.+.-- .|+ - ..+..++..+.
T Consensus 348 ~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~ 427 (822)
T PRK14574 348 PILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLV 427 (822)
T ss_pred HHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHH
Confidence 999999765421 12333468899999999999999999999987311 132 2 34556777789
Q ss_pred hcCCHHHHHHHHHhCCCCccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhcCCCCCchhhhhhhh
Q 021583 206 KLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNESSEEPEAAANLNESL 279 (310)
Q Consensus 206 ~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 279 (310)
..|++++|++.++++. . .-+-|..+...+-+. ..|...+|++.++..+.- .|+........
T Consensus 428 ~~gdl~~Ae~~le~l~-----~------~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~ 490 (822)
T PRK14574 428 ALNDLPTAQKKLEDLS-----S------TAPANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQ 490 (822)
T ss_pred HcCCHHHHHHHHHHHH-----H------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHH
Confidence 9999999999998741 0 012233333333333 799999999999666554 46544444444
No 55
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.93 E-value=0.00035 Score=51.19 Aligned_cols=81 Identities=12% Similarity=0.188 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHhcCCCCChHH
Q 021583 90 TVKKALKTLENEKDWKRIIQVTKWMLSKGQ-GRTMGTYFLLLNALAEDGR--------LDEAEELWTKIFLDHLEGTPRI 160 (310)
Q Consensus 90 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~ty~~ll~~~~~~g~--------~~~A~~~~~~m~~~~~~~~~~~ 160 (310)
|-...|..+...+++.....+|+.++..|+ .|++.+|+.++.+.++..- +-+.+.+++.|...+++ |+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lK-P~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLK-PNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccC-CcHH
Confidence 444556667777999999999999999999 8999999999998886532 44678889999999985 7778
Q ss_pred HHHHHHHHHHH
Q 021583 161 FFDKMISIYYN 171 (310)
Q Consensus 161 ~y~~li~~~~~ 171 (310)
+||.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999988765
No 56
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.91 E-value=0.00082 Score=61.11 Aligned_cols=123 Identities=14% Similarity=0.131 Sum_probs=102.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 021583 90 TVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIY 169 (310)
Q Consensus 90 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~ 169 (310)
-...|+..+...++++.|.++|+++.+.. |+. ...|.+.+...++-.+|.+++++..+.. |.+....+.-...|
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN--PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 34566677777899999999999999775 654 4458888888999999999999888653 24445777778889
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhC
Q 021583 170 YNRGMHEKMFEIFADMEELGVRPNV-SIVSMMGNAFQKLGMLDKYEKLKKKY 220 (310)
Q Consensus 170 ~~~g~~~~a~~l~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~a~~l~~~~ 220 (310)
.+.++.+.|.++.+++.+ +.|+. .+|..|..+|...|+++.|+..++.+
T Consensus 245 l~k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HhcCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 999999999999999887 56876 69999999999999999999999865
No 57
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.89 E-value=0.0012 Score=68.96 Aligned_cols=132 Identities=9% Similarity=0.000 Sum_probs=105.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHH
Q 021583 85 EFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDK 164 (310)
Q Consensus 85 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~ 164 (310)
+.+...+..+-..+.+.|++++|.+.|+...+.. +-+...+..+...|...|+.++|++.++...+.. +.+...+..
T Consensus 600 p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~--p~~~~~~~~ 676 (1157)
T PRK11447 600 PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA--NDSLNTQRR 676 (1157)
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--CCChHHHHH
Confidence 4455667788888999999999999999988662 3467888899999999999999999999887653 233446777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCC--CC---CHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 165 MISIYYNRGMHEKMFEIFADMEELGV--RP---NVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 165 li~~~~~~g~~~~a~~l~~~m~~~g~--~p---~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
+...+...|++++|.++++......- .| +...+..+...+...|+.++|...|++
T Consensus 677 la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~ 736 (1157)
T PRK11447 677 VALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKD 736 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888999999999999999876432 22 235666677888999999999999876
No 58
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.85 E-value=0.0018 Score=49.61 Aligned_cols=106 Identities=8% Similarity=-0.027 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMIS 167 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~ 167 (310)
......+...+.+.|++++|.+.|+.....+ ..+...+..+-..|.+.|++++|..+|++..+.+- .+...|..+-.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~la~ 93 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP--DDPRPYFHAAE 93 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CChHHHHHHHH
Confidence 4456667777788888888888888877653 34667777888888888888888888888776643 44456777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 021583 168 IYYNRGMHEKMFEIFADMEELGVRPNVSIVS 198 (310)
Q Consensus 168 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~ 198 (310)
.|...|++++|.+.|+...+. .|+...+.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 122 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEI--CGENPEYS 122 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHh--ccccchHH
Confidence 888888888888888877763 35544433
No 59
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.84 E-value=0.0008 Score=63.21 Aligned_cols=175 Identities=13% Similarity=0.081 Sum_probs=123.8
Q ss_pred ccCCCCCCchHHHHHHHhcCcCchHhHHHHHHhcC-----------------------CcHHHHHHHHHHHHHcCCCCCH
Q 021583 32 ARGPRPRYPRVWKARKRIGTISKSAKLVTCIKGLS-----------------------NVKEEVYGALDSFIAWELEFPL 88 (310)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------------------~~~~~~~~~~~~m~~~~~~p~~ 88 (310)
+....+..|.-| -...++|+-.++.+.||+.+. +..+.|...| +..+.+|.
T Consensus 413 Li~~~~~sPesW--ca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~f----r~Al~~~~ 486 (638)
T KOG1126|consen 413 LIDTDPNSPESW--CALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSF----RKALGVDP 486 (638)
T ss_pred HHhhCCCCcHHH--HHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHH----HhhhcCCc
Confidence 334455555544 455667888888888876555 1222233322 23455566
Q ss_pred HHHHH---HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHH
Q 021583 89 ITVKK---ALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKM 165 (310)
Q Consensus 89 ~~~~~---li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~l 165 (310)
..||+ |-..|.|+++++.|.-.|+...+.+ .-+.+....+...+-+.|+.|+|+++|++.....- .+..+---.
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~--kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP--KNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC--CCchhHHHH
Confidence 66655 4567889999999999998877664 44667777788888999999999999998876653 343333334
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 166 ISIYYNRGMHEKMFEIFADMEELGVRPN-VSIVSMMGNAFQKLGMLDKYEKLK 217 (310)
Q Consensus 166 i~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~l~ 217 (310)
...+...++.++|+..++++++ +.|+ ...|-.+...|.+.|+.+.|+..|
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f 614 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHF 614 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhh
Confidence 5555668899999999999987 5676 478888889999999999998876
No 60
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.83 E-value=0.0043 Score=54.65 Aligned_cols=126 Identities=12% Similarity=-0.073 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 021583 89 ITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISI 168 (310)
Q Consensus 89 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~ 168 (310)
..|..+-..|.+.|++++|...|+...+.. ..+...|+.+-..|...|++++|.+.|++..+.. |.+..+|..+-..
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~ 141 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 456666777888888888888888877653 3356888888888888888888888888887653 3344577778888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 169 YYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 169 ~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
+...|++++|.+.++...+. .|+..........+...++.++|...|++
T Consensus 142 l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~ 190 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQ 190 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 88888888888888887763 35433222333334556778888888854
No 61
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.83 E-value=0.0013 Score=51.43 Aligned_cols=100 Identities=11% Similarity=-0.009 Sum_probs=79.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 021583 90 TVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIY 169 (310)
Q Consensus 90 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~ 169 (310)
.+..+-..+...|++++|...|+...... ..+...|..+-..+.+.|++++|...|++..+.. |.+...|..+-.++
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~--p~~~~a~~~lg~~l 102 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD--ASHPEPVYQTGVCL 102 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHHHHHHHH
Confidence 35556777788899999999999877653 3467888888888999999999999999988754 34556888888888
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCH
Q 021583 170 YNRGMHEKMFEIFADMEELGVRPNV 194 (310)
Q Consensus 170 ~~~g~~~~a~~l~~~m~~~g~~p~~ 194 (310)
.+.|+.++|.+.|+...+. .|+.
T Consensus 103 ~~~g~~~eAi~~~~~Al~~--~p~~ 125 (144)
T PRK15359 103 KMMGEPGLAREAFQTAIKM--SYAD 125 (144)
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCC
Confidence 9999999999999887763 4543
No 62
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.82 E-value=0.0034 Score=51.99 Aligned_cols=176 Identities=12% Similarity=0.044 Sum_probs=125.5
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 021583 73 YGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLD 152 (310)
Q Consensus 73 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~ 152 (310)
..-+++..+.. +-+..+|..+...|-+.|..+.|.+-|+...+.. +-+..+.|..-.-+|..|++++|...|++-...
T Consensus 55 ~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~ 132 (250)
T COG3063 55 KKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD 132 (250)
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCChHHHHHHHHHHHhC
Confidence 66666666555 3346688888888999999999999998877652 334577788888889999999999999988877
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheec
Q 021583 153 HLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPN-VSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIK 231 (310)
Q Consensus 153 ~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~ 231 (310)
-..+.+..+|..+--+..+.|+.+.|++.|.+-.+. .|+ ..+.-.+.....+.|+.-.|...++.. ..
T Consensus 133 P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~-------~~-- 201 (250)
T COG3063 133 PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPARLYLERY-------QQ-- 201 (250)
T ss_pred CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHHHHHHHH-------Hh--
Confidence 654455568888888888999999999999987764 343 356677778888889999988887652 11
Q ss_pred cCcccCChhhhhHhhhc--cCCChhhHHhhhchh
Q 021583 232 GKRVRIPAKPKYELDSA--TEGKTNEVETTKNPN 263 (310)
Q Consensus 232 ~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m 263 (310)
.+ ..+..+.-..|.- +.|+-..+.++-..+
T Consensus 202 -~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 202 -RG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred -cc-cccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 11 1333333333333 777777666654433
No 63
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.81 E-value=0.00053 Score=56.28 Aligned_cols=72 Identities=22% Similarity=0.211 Sum_probs=42.6
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----------------CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEK----------------DWKRIIQVTKWMLSKGQGRTMGTYFLLL 130 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~----------------~~~~a~~~~~~m~~~g~~p~~~ty~~ll 130 (310)
+-++-....+..|.+.|+.-|..+|+.||..+-+.. +-+-|.+++++|+..|+.||..++..|+
T Consensus 66 GHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll 145 (228)
T PF06239_consen 66 GHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLL 145 (228)
T ss_pred ChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 334445666667777777777777777777665421 1133555666666666666666666666
Q ss_pred HHHHhcCC
Q 021583 131 NALAEDGR 138 (310)
Q Consensus 131 ~~~~~~g~ 138 (310)
+.+++.+.
T Consensus 146 ~iFG~~s~ 153 (228)
T PF06239_consen 146 NIFGRKSH 153 (228)
T ss_pred HHhccccH
Confidence 66555544
No 64
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.79 E-value=0.011 Score=49.03 Aligned_cols=173 Identities=13% Similarity=0.061 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 021583 89 ITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISI 168 (310)
Q Consensus 89 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~ 168 (310)
.+...|-..|.+.|++..|..-+++..+.. +-+.-+|..+-..|-+.|+.+.|.+.|++-....- .+-.+-|..=..
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p--~~GdVLNNYG~F 112 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP--NNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC--CccchhhhhhHH
Confidence 356677889999999999999999988773 33457899999999999999999999999887653 444577888888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHh---CCCCccchheeccCcccCChhhhhH
Q 021583 169 YYNRGMHEKMFEIFADMEELGVRPN-VSIVSMMGNAFQKLGMLDKYEKLKKK---YPPPKWEYRYIKGKRVRIPAKPKYE 244 (310)
Q Consensus 169 ~~~~g~~~~a~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~l~~~---~~p~~~~~~~~~~~~~~~~~~~~~~ 244 (310)
+|..|++++|..-|++-...---|. ..||..+.-|..+.|+.+.|...|++ ..|+. ....-.
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~--------------~~~~l~ 178 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF--------------PPALLE 178 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC--------------ChHHHH
Confidence 8999999999999999887533333 47899999999999999999999876 22221 111111
Q ss_pred hhhc--cCCChhhHHhhhchhhcCCCCCchhhhhhhh
Q 021583 245 LDSA--TEGKTNEVETTKNPNESSEEPEAAANLNESL 279 (310)
Q Consensus 245 li~~--~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 279 (310)
+-.. ..|+.-.|.-+++.....+. +....+--.+
T Consensus 179 ~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~i 214 (250)
T COG3063 179 LARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGI 214 (250)
T ss_pred HHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHH
Confidence 1122 67888889888888877665 5555544333
No 65
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.79 E-value=0.00015 Score=63.51 Aligned_cols=152 Identities=14% Similarity=0.140 Sum_probs=104.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHH--HHHHHHHHHHH
Q 021583 94 ALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRI--FFDKMISIYYN 171 (310)
Q Consensus 94 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~--~y~~li~~~~~ 171 (310)
.-..+...|++++|+++++.- -+.......+..|.+.++++.|.+.++.|.+..-+ ... ...+.++.+..
T Consensus 108 ~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD--~~l~qLa~awv~l~~g 179 (290)
T PF04733_consen 108 AATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDED--SILTQLAEAWVNLATG 179 (290)
T ss_dssp HHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCC--HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--HHHHHHHHHHHHHHhC
Confidence 334556789999999988642 56788888999999999999999999999987532 111 33444444444
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCccchheeccCcccCChhhhhHhhhc--
Q 021583 172 RGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKY-PPPKWEYRYIKGKRVRIPAKPKYELDSA-- 248 (310)
Q Consensus 172 ~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~-~p~~~~~~~~~~~~~~~~~~~~~~li~~-- 248 (310)
.+.+.+|.-+|+++.+. ..++..+.+.+.-++...|++++|+.++++. ..+ .-+..+.-.++-+
T Consensus 180 ~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~------------~~~~d~LaNliv~~~ 246 (290)
T PF04733_consen 180 GEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD------------PNDPDTLANLIVCSL 246 (290)
T ss_dssp TTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-------------CCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc------------cCCHHHHHHHHHHHH
Confidence 45799999999998654 5678899999999999999999999998762 111 1112222223333
Q ss_pred cCCCh-hhHHhhhchhhcC
Q 021583 249 TEGKT-NEVETTKNPNESS 266 (310)
Q Consensus 249 ~~g~~-~~a~~~~~~m~~~ 266 (310)
..|+. +.+.+++..+...
T Consensus 247 ~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 247 HLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HTT-TCHHHHHHHHHCHHH
T ss_pred HhCCChhHHHHHHHHHHHh
Confidence 56666 6677888877653
No 66
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.78 E-value=0.0051 Score=61.49 Aligned_cols=151 Identities=13% Similarity=0.074 Sum_probs=120.1
Q ss_pred HhcCCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 021583 63 KGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEA 142 (310)
Q Consensus 63 ~~~~~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A 142 (310)
....+..++|..++.+..... +.+...+..+...+.+.|++++|.++|+...+.. ..+...+..+...+...|+.++|
T Consensus 25 a~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA 102 (765)
T PRK10049 25 ALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEA 102 (765)
T ss_pred HHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 334455666677777776533 4456678999999999999999999999987652 34466777888999999999999
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 021583 143 EELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPN-VSIVSMMGNAFQKLGMLDKYEKLKKKY 220 (310)
Q Consensus 143 ~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~l~~~~ 220 (310)
...+++..+.. |.+.. |..+-..+...|+.++|+..+++..+. .|+ ...+..+..++...|..++|+..++..
T Consensus 103 ~~~l~~~l~~~--P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 103 LVKAKQLVSGA--PDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred HHHHHHHHHhC--CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 99999998874 34445 888999999999999999999999874 454 556667888888999999999888754
No 67
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.74 E-value=0.0032 Score=52.99 Aligned_cols=129 Identities=12% Similarity=0.028 Sum_probs=109.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHH
Q 021583 86 FPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKM 165 (310)
Q Consensus 86 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~l 165 (310)
-|....+.......+.|++..|...|++.... -.+|..+|+.+--+|.+.|+.++|..-|.+..+-.. -+...+|.|
T Consensus 98 ~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~--~~p~~~nNl 174 (257)
T COG5010 98 KDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP--NEPSIANNL 174 (257)
T ss_pred ccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc--CCchhhhhH
Confidence 34556667889999999999999999997644 478999999999999999999999999999888765 333578999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 021583 166 ISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKK 218 (310)
Q Consensus 166 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~ 218 (310)
--.|.-.|+.+.|+.++..-...+-. |...-..|..+....|++++|+++-.
T Consensus 175 gms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 175 GMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 99999999999999999998876533 66777888899999999999988854
No 68
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.74 E-value=0.00025 Score=58.19 Aligned_cols=107 Identities=22% Similarity=0.289 Sum_probs=82.9
Q ss_pred CCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChH
Q 021583 85 EFPLITVKKALKTLENE-----KDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPR 159 (310)
Q Consensus 85 ~p~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 159 (310)
..|-.+|..++..|.+. |..+=....+..|.+.|+.-|..+|+.||+.+=+ |.+. +.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-----------------p~ 105 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-----------------PR 105 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-----------------cc
Confidence 46789999999999764 7788888899999999999999999999998876 3321 11
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 021583 160 IFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLD 211 (310)
Q Consensus 160 ~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 211 (310)
..+.++-.-| -.+-+-|++++++|+..|+.||..|+..|++.|++.+..=
T Consensus 106 n~fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~ 155 (228)
T PF06239_consen 106 NFFQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPM 155 (228)
T ss_pred cHHHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHH
Confidence 1222222222 2345779999999999999999999999999999876653
No 69
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.74 E-value=0.0044 Score=55.80 Aligned_cols=152 Identities=9% Similarity=-0.020 Sum_probs=101.8
Q ss_pred HhcCCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 021583 63 KGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLEN----EKDWKRIIQVTKWMLSKGQGRT-MGTYFLLLNALAEDG 137 (310)
Q Consensus 63 ~~~~~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~-~~ty~~ll~~~~~~g 137 (310)
....+..+.+...+++..+.. +-+...+.. ...+.. .+..+.+.+.+.. .....|+ ......+-..+...|
T Consensus 53 ~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 53 AWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcC
Confidence 344466677778777776653 334444442 222222 3445555555544 2223343 345556667888899
Q ss_pred CHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCCHHHHH
Q 021583 138 RLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGV-RPNV--SIVSMMGNAFQKLGMLDKYE 214 (310)
Q Consensus 138 ~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~-~p~~--~ty~~li~~~~~~g~~~~a~ 214 (310)
++++|++.+++..+..- .+...+..+-..|...|++++|..+++......- .|+. ..|..+...+...|+.++|.
T Consensus 129 ~~~~A~~~~~~al~~~p--~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 129 QYDRAEEAARRALELNP--DDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred CHHHHHHHHHHHHhhCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999888753 4445788888899999999999999988775421 2333 45667888899999999999
Q ss_pred HHHHhC
Q 021583 215 KLKKKY 220 (310)
Q Consensus 215 ~l~~~~ 220 (310)
.++++.
T Consensus 207 ~~~~~~ 212 (355)
T cd05804 207 AIYDTH 212 (355)
T ss_pred HHHHHH
Confidence 998873
No 70
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.74 E-value=0.0011 Score=62.43 Aligned_cols=174 Identities=16% Similarity=0.050 Sum_probs=123.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHH
Q 021583 86 FPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGR-TMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDK 164 (310)
Q Consensus 86 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~ 164 (310)
-.+.+|.++-++|.-+++++.|++.|+...+. .| ..++|+.+-+=+....++|.|+..|..-....- .+-..|--
T Consensus 419 ~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~--rhYnAwYG 494 (638)
T KOG1126|consen 419 NSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP--RHYNAWYG 494 (638)
T ss_pred CCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc--hhhHHHHh
Confidence 34678888888888899999999988876644 45 678888888888888889999999988775532 22225555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHh---CCCCccchheeccCcccCChh
Q 021583 165 MISIYYNRGMHEKMFEIFADMEELGVRP-NVSIVSMMGNAFQKLGMLDKYEKLKKK---YPPPKWEYRYIKGKRVRIPAK 240 (310)
Q Consensus 165 li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~l~~~---~~p~~~~~~~~~~~~~~~~~~ 240 (310)
|--.|.+.++.+.|+-.|+...+ +-| +.+....+...+-+.|+.|+|+++|++ +.|. .+-..
T Consensus 495 lG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k------------n~l~~ 560 (638)
T KOG1126|consen 495 LGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK------------NPLCK 560 (638)
T ss_pred hhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC------------CchhH
Confidence 66788899999999988888665 445 457777778888889999999999876 2222 11122
Q ss_pred hhhHhhhccCCChhhHHhhhchhhcCCCCCchhhhhhhh
Q 021583 241 PKYELDSATEGKTNEVETTKNPNESSEEPEAAANLNESL 279 (310)
Q Consensus 241 ~~~~li~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 279 (310)
...+.+-...++.++|...++++.. +.|+-.+--.|+
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~ll 597 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKE--LVPQESSVFALL 597 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHH
Confidence 2223333357888888888877754 446655555555
No 71
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.74 E-value=0.017 Score=50.82 Aligned_cols=196 Identities=10% Similarity=-0.085 Sum_probs=121.5
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGR-TMGTYFLLLNALAEDGRLDEAEEL 145 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~g~~~~A~~~ 145 (310)
+..+.+...+++..+.+ +-+...|+.+-..|...|+++.|.+.|+...+. .| +..+|..+...+...|++++|.+.
T Consensus 78 g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~ 154 (296)
T PRK11189 78 GLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDD 154 (296)
T ss_pred CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 44555667777766654 346789999999999999999999999998865 34 467888889999999999999999
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCC---C
Q 021583 146 WTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYP---P 222 (310)
Q Consensus 146 ~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~---p 222 (310)
|++..+..- .+.. .......+...++.++|...+....... .|+...+ .+. ....|+.+++ +.++... +
T Consensus 155 ~~~al~~~P--~~~~-~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~ 226 (296)
T PRK11189 155 LLAFYQDDP--NDPY-RALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGAT 226 (296)
T ss_pred HHHHHHhCC--CCHH-HHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCC
Confidence 999888653 2221 1222222345678999999997755322 3333222 222 2334555443 2332211 1
Q ss_pred CccchheeccCcccCChhhhhHhhhccCCChhhHHhhhchhhcCCCCCchhhhhhhh
Q 021583 223 PKWEYRYIKGKRVRIPAKPKYELDSATEGKTNEVETTKNPNESSEEPEAAANLNESL 279 (310)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~li~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 279 (310)
....+.. -....+.+-..+....|+.++|..++++-..... |+..-+...+
T Consensus 227 ~~~~l~~-----~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~-~~~~e~~~~~ 277 (296)
T PRK11189 227 DNTELAE-----RLCETYFYLAKYYLSLGDLDEAAALFKLALANNV-YNFVEHRYAL 277 (296)
T ss_pred CcHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-chHHHHHHHH
Confidence 1100100 0112233333333389999999999998876553 3444444433
No 72
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.70 E-value=0.0063 Score=47.48 Aligned_cols=126 Identities=14% Similarity=0.165 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh--HHHHH
Q 021583 89 ITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGT---YFLLLNALAEDGRLDEAEELWTKIFLDHLEGTP--RIFFD 163 (310)
Q Consensus 89 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t---y~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~y~ 163 (310)
..|..++..+ ..++...+...++.+.+.. ..+.+. .=.+-..+...|++++|...|+......-. ++ ....-
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d-~~l~~~a~l 89 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPD-PELKPLARL 89 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-HHHHHHHHH
Confidence 4567777776 4788999999999988663 223232 223457788899999999999999987631 22 13556
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 164 KMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 164 ~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
.|...+...|++++|+..++...... .....+...-..|.+.|+.++|...|+.
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 67888889999999999997643322 3345677788889999999999998764
No 73
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.69 E-value=0.00072 Score=61.89 Aligned_cols=103 Identities=15% Similarity=0.050 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 69 KEEVYGALDSFIAW--ELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELW 146 (310)
Q Consensus 69 ~~~~~~~~~~m~~~--~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~ 146 (310)
.+.+..++-+.+.. ....-..|..++|+.|.+.|..+.+++++.+=...|+-||.++||.||+.+.+.|++..|.++.
T Consensus 82 ~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~ 161 (429)
T PF10037_consen 82 LDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVA 161 (429)
T ss_pred HHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHH
Confidence 34456666666543 2222344567999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHHc
Q 021583 147 TKIFLDHLEGTPRIFFDKMISIYYNR 172 (310)
Q Consensus 147 ~~m~~~~~~~~~~~~y~~li~~~~~~ 172 (310)
..|...+.- .+..|+..-+.+|.+.
T Consensus 162 ~~~~lQe~~-~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 162 TEMMLQEEF-DNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcc-CCchHHHHHHHHHHHh
Confidence 988877662 4446777777776665
No 74
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.68 E-value=0.0066 Score=50.12 Aligned_cols=121 Identities=14% Similarity=0.092 Sum_probs=85.0
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHH
Q 021583 73 YGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNAL-AEDGR--LDEAEELWTKI 149 (310)
Q Consensus 73 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~-~~~g~--~~~A~~~~~~m 149 (310)
...++...+.+ +.|...|..+-..|...|+++.|...|+...... .-+...+..+-.++ ...|+ .++|.+++++.
T Consensus 59 i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~a 136 (198)
T PRK10370 59 LQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKA 136 (198)
T ss_pred HHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 34444444444 4567788888888888888888888888777653 33566777776653 56676 48888888888
Q ss_pred HhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 021583 150 FLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVS 198 (310)
Q Consensus 150 ~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~ 198 (310)
.+.+- .+...+..+-..+.+.|++++|...|+.+.+.. .|+..-+.
T Consensus 137 l~~dP--~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~~ 182 (198)
T PRK10370 137 LALDA--NEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNRTQ 182 (198)
T ss_pred HHhCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHHH
Confidence 87753 444578888888888888888888888887643 34444333
No 75
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.67 E-value=0.0018 Score=50.64 Aligned_cols=91 Identities=8% Similarity=-0.012 Sum_probs=79.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 021583 126 YFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQ 205 (310)
Q Consensus 126 y~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 205 (310)
+..+-..+...|++++|...|+...... |.+...|..+-..+...|++++|...|+...+.. +-+...+..+..++.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 5557778889999999999999998765 3556689999999999999999999999998743 236799999999999
Q ss_pred hcCCHHHHHHHHHh
Q 021583 206 KLGMLDKYEKLKKK 219 (310)
Q Consensus 206 ~~g~~~~a~~l~~~ 219 (310)
..|+.++|...|++
T Consensus 104 ~~g~~~eAi~~~~~ 117 (144)
T PRK15359 104 MMGEPGLAREAFQT 117 (144)
T ss_pred HcCCHHHHHHHHHH
Confidence 99999999999976
No 76
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.64 E-value=0.006 Score=59.80 Aligned_cols=131 Identities=9% Similarity=0.047 Sum_probs=113.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHH
Q 021583 83 ELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRT-MGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIF 161 (310)
Q Consensus 83 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 161 (310)
....+...+-.|.....+.|++++|..+++...+. .|+ ......+...+.+.+++++|+...++..+..- .+...
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p--~~~~~ 156 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS--SSARE 156 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC--CCHHH
Confidence 45556888889999999999999999999998876 565 56777789999999999999999999998753 45568
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 162 FDKMISIYYNRGMHEKMFEIFADMEELGVRPN-VSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 162 y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
.+.+-.++.+.|++++|..+|++.... -|+ ..++..+-.++-+.|+.++|...|++
T Consensus 157 ~~~~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~ 213 (694)
T PRK15179 157 ILLEAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQA 213 (694)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 899999999999999999999999983 354 78899999999999999999999975
No 77
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.0055 Score=55.61 Aligned_cols=141 Identities=11% Similarity=0.134 Sum_probs=95.6
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC-CHHH-----------------------------
Q 021583 77 DSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKG-QGR-TMGT----------------------------- 125 (310)
Q Consensus 77 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p-~~~t----------------------------- 125 (310)
....+.|.+-+...-+....+.-...++|.|..+|+++.+.. ... |..+
T Consensus 251 e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ 330 (559)
T KOG1155|consen 251 ERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRP 330 (559)
T ss_pred HHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCc
Confidence 334456766665555555566667789999999999988652 111 2333
Q ss_pred --HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--------------
Q 021583 126 --YFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELG-------------- 189 (310)
Q Consensus 126 --y~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g-------------- 189 (310)
.+++-+-|.-.++.++|...|++..+-+- .....|+.|=+-|....+...|.+-++...+-.
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp--~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLNP--KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAY 408 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcCc--chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHH
Confidence 34455566777788999999998887653 344578888888888888888888776655432
Q ss_pred ------------------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 190 ------------------VRP-NVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 190 ------------------~~p-~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
++| |...|.+|-.+|.+.++.++|.+.|++
T Consensus 409 eim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykr 457 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKR 457 (559)
T ss_pred HHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 455 456666666666666666666666654
No 78
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.64 E-value=0.0018 Score=44.92 Aligned_cols=92 Identities=16% Similarity=0.147 Sum_probs=52.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Q 021583 92 KKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYN 171 (310)
Q Consensus 92 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~ 171 (310)
..+...+...|++++|..+++...+.. ..+...+..+...+...|++++|.+.|++..+... .+..++..+...+..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 80 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP--DNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--cchhHHHHHHHHHHH
Confidence 344555556666666666666655442 22334555566666666666666666666555432 222355566666666
Q ss_pred cCCHHHHHHHHHHHH
Q 021583 172 RGMHEKMFEIFADME 186 (310)
Q Consensus 172 ~g~~~~a~~l~~~m~ 186 (310)
.|+.++|.+.+....
T Consensus 81 ~~~~~~a~~~~~~~~ 95 (100)
T cd00189 81 LGKYEEALEAYEKAL 95 (100)
T ss_pred HHhHHHHHHHHHHHH
Confidence 666666666665544
No 79
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.60 E-value=0.0077 Score=52.48 Aligned_cols=168 Identities=12% Similarity=0.004 Sum_probs=122.4
Q ss_pred CCCCCCchHHHHHHHhcCcCchHhHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 021583 34 GPRPRYPRVWKARKRIGTISKSAKLVTCIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKW 113 (310)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 113 (310)
+......+-|=......++.+.+-+.++ ..-|+.-.. -.|-+.||-.|-++|.+..++..|+.+|.+
T Consensus 215 ~~~~~~~dwwWk~Q~gkCylrLgm~r~A-----------ekqlqssL~--q~~~~dTfllLskvY~ridQP~~AL~~~~~ 281 (478)
T KOG1129|consen 215 GSTGCTLDWWWKQQMGKCYLRLGMPRRA-----------EKQLQSSLT--QFPHPDTFLLLSKVYQRIDQPERALLVIGE 281 (478)
T ss_pred ccccchHhHHHHHHHHHHHHHhcChhhh-----------HHHHHHHhh--cCCchhHHHHHHHHHHHhccHHHHHHHHhh
Confidence 3333444444444444444444444444 444443222 246688999999999999999999999988
Q ss_pred HHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 021583 114 MLSKGQGRTMGTYFL-LLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRP 192 (310)
Q Consensus 114 m~~~g~~p~~~ty~~-ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p 192 (310)
-.+. .|--+||-. +-..+-..++.++|.++++...+..- .+......+-.+|.-.++.+-|+..|++..+-|+.
T Consensus 282 gld~--fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~--~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~- 356 (478)
T KOG1129|consen 282 GLDS--FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHP--INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ- 356 (478)
T ss_pred hhhc--CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCC--ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-
Confidence 6655 466666644 56677777899999999999887653 44456666777888899999999999999999986
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 193 NVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 193 ~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
+...|+.+--||.-.+++|-++--|++
T Consensus 357 speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 357 SPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred ChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 777888988999999999998888765
No 80
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.59 E-value=0.0023 Score=48.98 Aligned_cols=95 Identities=15% Similarity=0.100 Sum_probs=80.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 021583 122 TMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMG 201 (310)
Q Consensus 122 ~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li 201 (310)
+......+...+.+.|+.++|.+.|++....+- .+...|..+-..|.+.|++++|...++...+.+ +.+...+..+-
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la 92 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP--YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAA 92 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHH
Confidence 345567778888999999999999999988653 455689999999999999999999999877654 33567788888
Q ss_pred HHHHhcCCHHHHHHHHHh
Q 021583 202 NAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 202 ~~~~~~g~~~~a~~l~~~ 219 (310)
.+|...|+.++|.+.|++
T Consensus 93 ~~~~~~g~~~~A~~~~~~ 110 (135)
T TIGR02552 93 ECLLALGEPESALKALDL 110 (135)
T ss_pred HHHHHcCCHHHHHHHHHH
Confidence 899999999999999876
No 81
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.57 E-value=0.02 Score=50.98 Aligned_cols=180 Identities=16% Similarity=0.159 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHhcCCHHHHH
Q 021583 71 EVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRT-------MGTYFLLLNALAEDGRLDEAE 143 (310)
Q Consensus 71 ~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-------~~ty~~ll~~~~~~g~~~~A~ 143 (310)
.+..-++++.+.+ +-+.........+|.+.|++.....+...|.+.|+--+ ..+|+.+++-....+..++-.
T Consensus 171 aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~ 249 (400)
T COG3071 171 AARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLK 249 (400)
T ss_pred hHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 3444455555444 33466778888888888888888888888888876544 345666666666666666655
Q ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC------------------------------C
Q 021583 144 ELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRP------------------------------N 193 (310)
Q Consensus 144 ~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p------------------------------~ 193 (310)
..|++..+.-- ..+ ..-.+++.-+.++|+.++|.++..+-.+++..| +
T Consensus 250 ~~W~~~pr~lr-~~p-~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~ 327 (400)
T COG3071 250 TWWKNQPRKLR-NDP-ELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPED 327 (400)
T ss_pred HHHHhccHHhh-cCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCC
Confidence 66666554322 111 234455666677777777777766665554222 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhc
Q 021583 194 VSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNES 265 (310)
Q Consensus 194 ~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~ 265 (310)
.-.+.+|-..|.+.+.|.+|...|+.- -...++.+.|+.+-++ ..|...+|++..++-+.
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaA------------l~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAA------------LKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHH------------HhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 355677778888888888888887641 1226777788888877 88999999888765543
No 82
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.49 E-value=0.0029 Score=43.77 Aligned_cols=92 Identities=24% Similarity=0.245 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 021583 125 TYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAF 204 (310)
Q Consensus 125 ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 204 (310)
++..+...+...|++++|.++|++..+..- .+...+..+...|...+++++|.+.++...... ..+..++..+...+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 78 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDP--DNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHH
Confidence 355677788889999999999999887643 334678889999999999999999999987754 22446888889999
Q ss_pred HhcCCHHHHHHHHHh
Q 021583 205 QKLGMLDKYEKLKKK 219 (310)
Q Consensus 205 ~~~g~~~~a~~l~~~ 219 (310)
...|+.++|...+++
T Consensus 79 ~~~~~~~~a~~~~~~ 93 (100)
T cd00189 79 YKLGKYEEALEAYEK 93 (100)
T ss_pred HHHHhHHHHHHHHHH
Confidence 999999999999866
No 83
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.48 E-value=0.019 Score=48.50 Aligned_cols=166 Identities=14% Similarity=0.056 Sum_probs=114.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChH-HHHH
Q 021583 87 PLITVKKALKTLENEKDWKRIIQVTKWMLSKGQ-GRT-MGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPR-IFFD 163 (310)
Q Consensus 87 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~-~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~y~ 163 (310)
....+-.+...+.+.|+++.|...|+......- .|. ..++..+...+.+.|++++|...++++.+..-..+.. .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 456777888889999999999999999876521 111 2467778899999999999999999998765321211 1344
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHHHHCCCCCCH-HHH-----------------HHHHHHHHhcCCHHHHHHHH
Q 021583 164 KMISIYYNR--------GMHEKMFEIFADMEELGVRPNV-SIV-----------------SMMGNAFQKLGMLDKYEKLK 217 (310)
Q Consensus 164 ~li~~~~~~--------g~~~~a~~l~~~m~~~g~~p~~-~ty-----------------~~li~~~~~~g~~~~a~~l~ 217 (310)
.+-.++.+. |+.++|.+.++...... |+. ..+ -.+...|.+.|+.++|...+
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~ 189 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRF 189 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 444445443 77899999999987643 332 111 13456678889999999998
Q ss_pred HhC---CCCccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhc
Q 021583 218 KKY---PPPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNES 265 (310)
Q Consensus 218 ~~~---~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~ 265 (310)
++. .|+. ......+..+... ..|+.++|..+++.+..
T Consensus 190 ~~al~~~p~~-----------~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 190 ETVVENYPDT-----------PATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHCCCC-----------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 763 1221 2223445555555 89999999988777654
No 84
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.0052 Score=56.16 Aligned_cols=144 Identities=11% Similarity=0.093 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 021583 71 EVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIF 150 (310)
Q Consensus 71 ~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~ 150 (310)
.|..=|++..+.+ +-+...|-.+-.+..+.+++++++..|++.+++ ++--..+|+-.-..+...+++++|.+.|+...
T Consensus 412 ~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 412 EAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 3444444444433 224667777777778889999999999998866 45557899999999999999999999999877
Q ss_pred hcCCC----CChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 151 LDHLE----GTPR--IFFDKMISIYYNRGMHEKMFEIFADMEELGVRPN-VSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 151 ~~~~~----~~~~--~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
+..-. ..+. .+.-+++-.-. .+++..|+++++.-.+ +.|- ...|..|...-...|++++|..+|++
T Consensus 490 ~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 490 ELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred hhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 54221 1111 22333333333 4899999999988765 3453 48899999999999999999999976
No 85
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.43 E-value=0.011 Score=48.81 Aligned_cols=115 Identities=10% Similarity=0.076 Sum_probs=93.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHH-HHcCC--HHH
Q 021583 101 EKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIY-YNRGM--HEK 177 (310)
Q Consensus 101 ~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~-~~~g~--~~~ 177 (310)
.++.+++...++...... ..|...|..|-..|...|+.++|...|++..+..- .+...+..+-.++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P--~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG--ENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCCCcHH
Confidence 556677777776655442 56788999999999999999999999999888753 4556788888764 67777 599
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 178 MFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 178 a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
|.+++++..+..-. +...+..+...+.+.|++++|...|++
T Consensus 129 A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 129 TREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999875422 568889999999999999999999887
No 86
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.39 E-value=0.0067 Score=53.21 Aligned_cols=128 Identities=13% Similarity=0.079 Sum_probs=95.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCChHHH
Q 021583 86 FPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAE----DGRLDEAEELWTKIFLDHLEGTPRIF 161 (310)
Q Consensus 86 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~ 161 (310)
-+.......+..|.+.++++.|.+.++.|.+.. .| .+-..|..++.. .+.+++|..+|+++.++- +.+..+
T Consensus 129 ~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~--~~t~~~ 203 (290)
T PF04733_consen 129 GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKF--GSTPKL 203 (290)
T ss_dssp TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS----SHHH
T ss_pred CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc--CCCHHH
Confidence 457777888999999999999999999998763 44 344445555543 346999999999988763 245568
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCH-HHHHHHHHhC
Q 021583 162 FDKMISIYYNRGMHEKMFEIFADMEELGVRP-NVSIVSMMGNAFQKLGML-DKYEKLKKKY 220 (310)
Q Consensus 162 y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~-~~a~~l~~~~ 220 (310)
.|.+..++...|++++|++++.+.... .| |..|...++-+....|+. +.+.+.+.++
T Consensus 204 lng~A~~~l~~~~~~eAe~~L~~al~~--~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 204 LNGLAVCHLQLGHYEEAEELLEEALEK--DPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 999999999999999999999996653 34 467788888888888888 6677776653
No 87
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.38 E-value=0.0077 Score=52.61 Aligned_cols=126 Identities=10% Similarity=0.080 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 021583 89 ITVKKALKTLENEKDWKRIIQVTKWMLSKG-QGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMIS 167 (310)
Q Consensus 89 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~ 167 (310)
.+|..+|+..-+.+..+.|+.+|...++.+ ...+++...++|.-+ ..++.+.|.++|+...+.- +.+...|...|.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 468888999988888999999999988543 344555555555433 3466777999999888763 244457888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 168 IYYNRGMHEKMFEIFADMEELGVRPNV----SIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 168 ~~~~~g~~~~a~~l~~~m~~~g~~p~~----~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
.+.+.++.+.|..+|+..... .|.. ..|..+++-=.+.|+++.+.++.++
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R 132 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKR 132 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999999998765 3333 4888888888889999998888765
No 88
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.057 Score=49.31 Aligned_cols=188 Identities=11% Similarity=-0.022 Sum_probs=140.3
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELW 146 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~ 146 (310)
...++|...|+...+.+ +-....|+.+-.-|...++...|.+-|....+-+ +.|-..|=-|-++|.--+...=|+-.|
T Consensus 344 ~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYf 421 (559)
T KOG1155|consen 344 SEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYF 421 (559)
T ss_pred HhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHH
Confidence 45666777788777766 3446678888888888888888888888877663 567777788888999989999999999
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccc
Q 021583 147 TKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWE 226 (310)
Q Consensus 147 ~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~ 226 (310)
++..+- +|-|...|.+|=..|.+.++.++|++-|......|-. +...|..|.+.|-+.++..+|.+.|+++...
T Consensus 422 qkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~--- 495 (559)
T KOG1155|consen 422 QKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEV--- 495 (559)
T ss_pred HHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---
Confidence 887764 4567789999999999999999999999998876643 6688999999999999999999999873211
Q ss_pred hheeccCcccCChhhhhH--hhhc--cCCChhhHHhhhchhhc
Q 021583 227 YRYIKGKRVRIPAKPKYE--LDSA--TEGKTNEVETTKNPNES 265 (310)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~--li~~--~~g~~~~a~~~~~~m~~ 265 (310)
+ ...|...+-..... |..- +.+++++|..+......
T Consensus 496 ~---~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 496 S---ELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred H---HhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 1 11122222112222 2222 89999999887655433
No 89
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.36 E-value=0.0085 Score=44.35 Aligned_cols=100 Identities=14% Similarity=0.048 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-hHHHHHHHH
Q 021583 90 TVKKALKTLENEKDWKRIIQVTKWMLSKG--QGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGT-PRIFFDKMI 166 (310)
Q Consensus 90 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~y~~li 166 (310)
++-.+...+.+.|++++|.+.|..+.... .......+-.+...+.+.|++++|.+.|+++....-..+ ....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 45566777788889999999998887542 112245666688888888999999999988876532111 123577777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCC
Q 021583 167 SIYYNRGMHEKMFEIFADMEELG 189 (310)
Q Consensus 167 ~~~~~~g~~~~a~~l~~~m~~~g 189 (310)
..+.+.|+.++|.+.+++..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 88888899999999888887753
No 90
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.32 E-value=0.0031 Score=54.83 Aligned_cols=184 Identities=10% Similarity=0.054 Sum_probs=134.7
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELW 146 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~ 146 (310)
+.++.|..++.+-.+.- +.|+....-+...+-..++.++|.++|....+. ..-++.+..++-.+|.-.++++-|+.++
T Consensus 270 dQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryY 347 (478)
T KOG1129|consen 270 DQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYY 347 (478)
T ss_pred ccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHH
Confidence 44555566555533322 334445556677788889999999999998765 3557788888889999999999999999
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHhCCCCc
Q 021583 147 TKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNV--SIVSMMGNAFQKLGMLDKYEKLKKKYPPPK 224 (310)
Q Consensus 147 ~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~--~ty~~li~~~~~~g~~~~a~~l~~~~~p~~ 224 (310)
.++.+.|+. .+ ..|+.+--+|.-.+++|-++.-|.+-...--.|+. ..|-.|-.....-|++..|.+.|+-.....
T Consensus 348 RRiLqmG~~-sp-eLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d 425 (478)
T KOG1129|consen 348 RRILQMGAQ-SP-ELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD 425 (478)
T ss_pred HHHHHhcCC-Ch-HHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC
Confidence 999999994 43 56777777777899999999999988876555664 567777777888999999999987532110
Q ss_pred cchheeccCcccCChhhhh--HhhhccCCChhhHHhhhchhhc
Q 021583 225 WEYRYIKGKRVRIPAKPKY--ELDSATEGKTNEVETTKNPNES 265 (310)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~--~li~~~~g~~~~a~~~~~~m~~ 265 (310)
.-+...+| +++.++.|++++|..+++.-.+
T Consensus 426 -----------~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 426 -----------AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred -----------cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 11223333 3455599999999988876543
No 91
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.29 E-value=0.015 Score=53.21 Aligned_cols=144 Identities=11% Similarity=0.057 Sum_probs=111.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 021583 90 TVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIY 169 (310)
Q Consensus 90 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~ 169 (310)
-|...+. +...|++++|+..++.+.+. .+-|.+-.......+.+.++..+|.+.++++.... |.....+-.+-.+|
T Consensus 309 ~YG~A~~-~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~al 384 (484)
T COG4783 309 QYGRALQ-TYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQAL 384 (484)
T ss_pred HHHHHHH-HHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHH
Confidence 3544444 44678999999999997765 33455666677889999999999999999999764 23345788889999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCcccCChhhhhHhhhcc
Q 021583 170 YNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSAT 249 (310)
Q Consensus 170 ~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~ 249 (310)
.+.|+.++|..+++...... +-|...|..|-.+|...|+..++..-..+ .+.+
T Consensus 385 l~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE-------------------~~~~------- 437 (484)
T COG4783 385 LKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE-------------------GYAL------- 437 (484)
T ss_pred HhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH-------------------HHHh-------
Confidence 99999999999999987653 44789999999999999999998666322 2233
Q ss_pred CCChhhHHhhhchhh
Q 021583 250 EGKTNEVETTKNPNE 264 (310)
Q Consensus 250 ~g~~~~a~~~~~~m~ 264 (310)
.|+++.|.+.+..-.
T Consensus 438 ~G~~~~A~~~l~~A~ 452 (484)
T COG4783 438 AGRLEQAIIFLMRAS 452 (484)
T ss_pred CCCHHHHHHHHHHHH
Confidence 788888877775554
No 92
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.26 E-value=0.00094 Score=46.83 Aligned_cols=82 Identities=18% Similarity=0.322 Sum_probs=47.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 021583 136 DGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEK 215 (310)
Q Consensus 136 ~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ 215 (310)
.|++++|+.+|+++.+..-..++...+-.+-.+|.+.|++++|.++++. .+.+. .+....-.+..+|.+.|++++|.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4667777777777776643101223444477777777777777777766 21111 122333344667777777777777
Q ss_pred HHHh
Q 021583 216 LKKK 219 (310)
Q Consensus 216 l~~~ 219 (310)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7653
No 93
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.24 E-value=0.025 Score=44.07 Aligned_cols=126 Identities=14% Similarity=0.124 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHH
Q 021583 124 GTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTP-RIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNV--SIVSMM 200 (310)
Q Consensus 124 ~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~--~ty~~l 200 (310)
..|..++..+ ..++.+.+...++.+.+..-..+- ....-.+-..+...|++++|...|+......-.|+. ...-.|
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 4566677776 489999999999999987542111 123444557888999999999999999987633332 345557
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhch
Q 021583 201 GNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNP 262 (310)
Q Consensus 201 i~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~ 262 (310)
...+...|++++|+..++...+..+ ....+..+-+. +.|++++|...++.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~------------~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAF------------KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcch------------HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7889999999999999876433221 11222222222 79999999887753
No 94
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.21 E-value=0.04 Score=46.51 Aligned_cols=170 Identities=15% Similarity=0.039 Sum_probs=124.7
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHH
Q 021583 82 WELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIF 161 (310)
Q Consensus 82 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 161 (310)
....|.......+-..+.-.|+-+....+....... ..-|......+.....+.|++.+|...|.+..+-. |++...
T Consensus 60 ~~~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~--p~d~~~ 136 (257)
T COG5010 60 VLRNPEDLSIAKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA--PTDWEA 136 (257)
T ss_pred HhcCcchHHHHHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC--CCChhh
Confidence 344554333356677777788888877777664422 34566777779999999999999999999988764 577789
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCcccCChh
Q 021583 162 FDKMISIYYNRGMHEKMFEIFADMEELGVRP-NVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAK 240 (310)
Q Consensus 162 y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~ 240 (310)
||.+=-+|-+.|+.++|..-|.+..+- .| +...++.|.-.|.-.|+++.|..++..-. .. + ..+..
T Consensus 137 ~~~lgaaldq~Gr~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~------l~----~-~ad~~ 203 (257)
T COG5010 137 WNLLGAALDQLGRFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAY------LS----P-AADSR 203 (257)
T ss_pred hhHHHHHHHHccChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHH------hC----C-CCchH
Confidence 999999999999999999999998773 44 35778999999999999999999976511 00 0 11333
Q ss_pred hhhH--hhhccCCChhhHHhhhchhhcCC
Q 021583 241 PKYE--LDSATEGKTNEVETTKNPNESSE 267 (310)
Q Consensus 241 ~~~~--li~~~~g~~~~a~~~~~~m~~~~ 267 (310)
+-.. ++....|+..+|+++...-....
T Consensus 204 v~~NLAl~~~~~g~~~~A~~i~~~e~~~~ 232 (257)
T COG5010 204 VRQNLALVVGLQGDFREAEDIAVQELLSE 232 (257)
T ss_pred HHHHHHHHHhhcCChHHHHhhccccccch
Confidence 3333 33448999999998876554443
No 95
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.20 E-value=0.0058 Score=53.40 Aligned_cols=132 Identities=9% Similarity=0.015 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 021583 123 MGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGN 202 (310)
Q Consensus 123 ~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~ 202 (310)
+.+|..+|+..-+.+.++.|.++|++.++.+-.........++|.-++ .++.+.|.++|+...+. +.-+...|...++
T Consensus 1 t~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~-~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 1 TLVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYC-NKDPKRARKIFERGLKK-FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHT-CS-HHHHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 368999999999999999999999999876542233334455554433 67788899999998865 3446777888889
Q ss_pred HHHhcCCHHHHHHHHHhCCCCccchheeccCcccC-ChhhhhHhhhc--cCCChhhHHhhhchhhc
Q 021583 203 AFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRI-PAKPKYELDSA--TEGKTNEVETTKNPNES 265 (310)
Q Consensus 203 ~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~-~~~~~~~li~~--~~g~~~~a~~~~~~m~~ 265 (310)
-+.+.++.+.|..+|++...... ... ...+|...++. ..|+.+.+.++.+++..
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~---------~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLP---------KEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSS---------CHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcC---------chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999987432200 011 34578888877 88888888887766644
No 96
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.17 E-value=0.012 Score=57.84 Aligned_cols=196 Identities=12% Similarity=0.080 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc------------C
Q 021583 71 EVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSK-GQGRTMGTYFLLLNALAED------------G 137 (310)
Q Consensus 71 ~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~ty~~ll~~~~~~------------g 137 (310)
.+...+.+....+ .-++..++-+-+.|.+...+..|.+-|....+. ...+|+++.-.|-+.|... +
T Consensus 548 ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk 626 (1018)
T KOG2002|consen 548 EASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKK 626 (1018)
T ss_pred HHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHH
Confidence 3444455444432 223444444444777777788888877665533 2347888887777765432 3
Q ss_pred CHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 138 RLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLK 217 (310)
Q Consensus 138 ~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~ 217 (310)
..++|.++|.+..+.. |.|...=|-+-..++..|++.+|..+|...++.... +..+|..+.++|..+|++..|.++|
T Consensus 627 ~~~KAlq~y~kvL~~d--pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmY 703 (1018)
T KOG2002|consen 627 HQEKALQLYGKVLRND--PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMY 703 (1018)
T ss_pred HHHHHHHHHHHHHhcC--cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHH
Confidence 3578999999888764 456567777888889999999999999999987542 4567899999999999999999998
Q ss_pred HhCCCCccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhcCCCCCchhhhhhhh
Q 021583 218 KKYPPPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNESSEEPEAAANLNESL 279 (310)
Q Consensus 218 ~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 279 (310)
+.+. +...-.-+..+...|-.+ .+|.+.+|.+++..-...-..-..-.||..+
T Consensus 704 e~~l---------kkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 704 ENCL---------KKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred HHHH---------HHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence 7632 222234456666667777 8888988888775444333222334566655
No 97
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.17 E-value=0.13 Score=48.80 Aligned_cols=126 Identities=16% Similarity=0.111 Sum_probs=103.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 021583 90 TVKKALKTLENEKDWKRIIQVTKWMLSKGQGRT-MGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISI 168 (310)
Q Consensus 90 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~ 168 (310)
++.-+-..|-..|++++|+++++...+. .|+ +..|.+--+.|-+.|++++|.+.++..++... -|...=+-.+..
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~--~DRyiNsK~aKy 271 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL--ADRYINSKCAKY 271 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh--hhHHHHHHHHHH
Confidence 4556677788999999999999988876 577 67888889999999999999999999998876 677788888899
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHH--------HHHHHHHHHhcCCHHHHHHHHHh
Q 021583 169 YYNRGMHEKMFEIFADMEELGVRPNVSI--------VSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 169 ~~~~g~~~~a~~l~~~m~~~g~~p~~~t--------y~~li~~~~~~g~~~~a~~l~~~ 219 (310)
+.++|++++|.+++......+..|-... ..-...+|.+.|++..|++.|..
T Consensus 272 ~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~ 330 (517)
T PF12569_consen 272 LLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHA 330 (517)
T ss_pred HHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999999999887765443211 24455678899999999888754
No 98
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.15 E-value=0.032 Score=50.18 Aligned_cols=157 Identities=9% Similarity=-0.015 Sum_probs=101.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Q 021583 95 LKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAE----DGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYY 170 (310)
Q Consensus 95 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~ 170 (310)
...+...|++++|.++++...+. .+.|...+.. ...+.. .+..+.+.+.+.. .....+........+-..+.
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~-~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~ 125 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDD-YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLE 125 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH-CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHH
Confidence 34556789999999999998765 2334444442 223333 4555555555554 11121122234555667788
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCcccCCh--hhhhHhhhc
Q 021583 171 NRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPA--KPKYELDSA 248 (310)
Q Consensus 171 ~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~--~~~~~li~~ 248 (310)
..|++++|++.++...+.. +.+...+..+...|...|++++|..++++..+.... .++. ..|-.+...
T Consensus 126 ~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~---------~~~~~~~~~~~la~~ 195 (355)
T cd05804 126 EAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC---------SSMLRGHNWWHLALF 195 (355)
T ss_pred HcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC---------CcchhHHHHHHHHHH
Confidence 9999999999999998754 234678889999999999999999998874322110 1121 222223333
Q ss_pred --cCCChhhHHhhhchhhc
Q 021583 249 --TEGKTNEVETTKNPNES 265 (310)
Q Consensus 249 --~~g~~~~a~~~~~~m~~ 265 (310)
..|+.++|...++....
T Consensus 196 ~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 196 YLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHCCCHHHHHHHHHHHhc
Confidence 89999999999988743
No 99
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.14 E-value=0.045 Score=43.97 Aligned_cols=85 Identities=12% Similarity=0.122 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHH
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRT--MGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKM 165 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~l 165 (310)
...+..+-..+...|++++|...|++..+..-.+. ...+..+...+.+.|++++|...+++..+..- .+...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP--KQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--ccHHHHHHH
Confidence 45678888888999999999999999876543332 46788899999999999999999999888643 344567777
Q ss_pred HHHHHHcCC
Q 021583 166 ISIYYNRGM 174 (310)
Q Consensus 166 i~~~~~~g~ 174 (310)
...|...|+
T Consensus 113 g~~~~~~g~ 121 (172)
T PRK02603 113 AVIYHKRGE 121 (172)
T ss_pred HHHHHHcCC
Confidence 777877776
No 100
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.14 E-value=0.16 Score=46.29 Aligned_cols=174 Identities=16% Similarity=0.135 Sum_probs=87.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHH
Q 021583 100 NEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMF 179 (310)
Q Consensus 100 ~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~ 179 (310)
..|++++|.+.|.+.......-+...||+=+ .+-+.|++++|+++|-++...-. -+..+.-.+.+-|-...+...|.
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~il~--nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAILL--NNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHhhCHHHHH
Confidence 3455666666666555443222233333322 23445566666666655443322 11223444455555555555555
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHh---CCCCc-cchh-----------------ee-ccCccc
Q 021583 180 EIFADMEELGVRP-NVSIVSMMGNAFQKLGMLDKYEKLKKK---YPPPK-WEYR-----------------YI-KGKRVR 236 (310)
Q Consensus 180 ~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~l~~~---~~p~~-~~~~-----------------~~-~~~~~~ 236 (310)
+++-+ ...+.| |.....-|...|-+.|+-.+|.+.+=. ..|.. .+.. ++ +..-+.
T Consensus 579 e~~~q--~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliq 656 (840)
T KOG2003|consen 579 ELLMQ--ANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ 656 (840)
T ss_pred HHHHH--hcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC
Confidence 55433 232333 345555555556666665555554311 11111 0000 11 123446
Q ss_pred CChhhhhHhhhc---cCCChhhHHhhhchhhcCCCCCchhhhhhhh
Q 021583 237 IPAKPKYELDSA---TEGKTNEVETTKNPNESSEEPEAAANLNESL 279 (310)
Q Consensus 237 ~~~~~~~~li~~---~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 279 (310)
|+..-|..++.. +.|+++.|.+++... ....|.+..-+.-|.
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~-hrkfpedldclkflv 701 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDI-HRKFPEDLDCLKFLV 701 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHH-HHhCccchHHHHHHH
Confidence 777888877766 888999888888665 334455555555555
No 101
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.13 E-value=0.022 Score=45.57 Aligned_cols=95 Identities=12% Similarity=0.029 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHH
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGR--TMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKM 165 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~l 165 (310)
...|..+...+...|++++|...|+......-.+ ...+|..+-..|...|+.++|++.+++..+..- ....+++.+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~--~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP--FLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CcHHHHHHH
Confidence 4567777888888899999999999887553222 245788888999999999999999998887532 333467777
Q ss_pred HHHHH-------HcCCHHHHHHHHHH
Q 021583 166 ISIYY-------NRGMHEKMFEIFAD 184 (310)
Q Consensus 166 i~~~~-------~~g~~~~a~~l~~~ 184 (310)
...|. ..|++++|...+++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 77777 77777766665554
No 102
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.12 E-value=0.018 Score=42.52 Aligned_cols=97 Identities=13% Similarity=0.127 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHH
Q 021583 124 GTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGT-PRIFFDKMISIYYNRGMHEKMFEIFADMEELG--VRPNVSIVSMM 200 (310)
Q Consensus 124 ~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g--~~p~~~ty~~l 200 (310)
.++-.+...+.+.|+.++|.+.|+++.+..-..+ ....+..+...+.+.|++++|.+.++...... -......+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 3456677888999999999999999987643111 12367779999999999999999999988642 11124567888
Q ss_pred HHHHHhcCCHHHHHHHHHhC
Q 021583 201 GNAFQKLGMLDKYEKLKKKY 220 (310)
Q Consensus 201 i~~~~~~g~~~~a~~l~~~~ 220 (310)
..++...|+.++|.+.++++
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~ 102 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQV 102 (119)
T ss_pred HHHHHHhCChHHHHHHHHHH
Confidence 88899999999999998763
No 103
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.06 E-value=0.099 Score=51.31 Aligned_cols=183 Identities=11% Similarity=0.085 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH----------------------
Q 021583 70 EEVYGALDSFIA-WELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTY---------------------- 126 (310)
Q Consensus 70 ~~~~~~~~~m~~-~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty---------------------- 126 (310)
+.|.+.++...+ .+-..+...++.++..|.+...++.+......+......+|...+
T Consensus 297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~ 376 (895)
T KOG2076|consen 297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSY 376 (895)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCc
Confidence 556666666554 244566778899999999999999999999888873332222221
Q ss_pred ----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 021583 127 ----FLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRI-FFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMG 201 (310)
Q Consensus 127 ----~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li 201 (310)
.-++-++..-...+....+...+.+...-+.+.+ .|--+..+|.+.|++++|..++......-.--+...|--+.
T Consensus 377 ~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a 456 (895)
T KOG2076|consen 377 DLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA 456 (895)
T ss_pred cchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence 1223334444555556666666677665222222 79999999999999999999999998764444688999999
Q ss_pred HHHHhcCCHHHHHHHHHhC---CCCccchheeccCcccCChhhhhHhhhccCCChhhHHhhhchhh
Q 021583 202 NAFQKLGMLDKYEKLKKKY---PPPKWEYRYIKGKRVRIPAKPKYELDSATEGKTNEVETTKNPNE 264 (310)
Q Consensus 202 ~~~~~~g~~~~a~~l~~~~---~p~~~~~~~~~~~~~~~~~~~~~~li~~~~g~~~~a~~~~~~m~ 264 (310)
++|-..|..++|.+.|+.+ .|+ ..|+.+--+=+-...|+.++|.+++..+.
T Consensus 457 ~c~~~l~e~e~A~e~y~kvl~~~p~------------~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 457 RCYMELGEYEEAIEFYEKVLILAPD------------NLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCC------------chhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999999999998763 333 23333322222226999999999998875
No 104
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.06 E-value=0.034 Score=50.72 Aligned_cols=114 Identities=11% Similarity=0.002 Sum_probs=92.5
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELW 146 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~ 146 (310)
...+.+..+++++.+.. |+. ...+...+...++-.+|.+++++.... .+-+......-.+.|.+.++.+.|+++.
T Consensus 183 ~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~~~lAL~iA 257 (395)
T PF09295_consen 183 QRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKKYELALEIA 257 (395)
T ss_pred ccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 45667889999988876 554 345788888888999999999998854 3446666777778899999999999999
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 021583 147 TKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEE 187 (310)
Q Consensus 147 ~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~ 187 (310)
++..+.. |.+-.+|..|..+|.+.|++++|+-.++.+..
T Consensus 258 k~av~ls--P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 258 KKAVELS--PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHhC--chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 9999863 23335999999999999999999999998764
No 105
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.06 E-value=0.087 Score=48.00 Aligned_cols=128 Identities=14% Similarity=0.057 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMIS 167 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~ 167 (310)
....-.+.+.|--..+...|.+++-+.. +=+.-|....+.|-..|-+.|+-.+|.+++-+--+ -+ |.+..|...|-.
T Consensus 558 ~evl~qianiye~led~aqaie~~~q~~-slip~dp~ilskl~dlydqegdksqafq~~ydsyr-yf-p~nie~iewl~a 634 (840)
T KOG2003|consen 558 AEVLVQIANIYELLEDPAQAIELLMQAN-SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YF-PCNIETIEWLAA 634 (840)
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhc-ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-cc-CcchHHHHHHHH
Confidence 4445555666666666666666654432 22455678888899999999999888887654322 12 345557777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHhC
Q 021583 168 IYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQ-KLGMLDKYEKLKKKY 220 (310)
Q Consensus 168 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~-~~g~~~~a~~l~~~~ 220 (310)
-|....-++++...|+.. .=+.|+..-|..||..|. +.|++.+|..+++.+
T Consensus 635 yyidtqf~ekai~y~eka--aliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 635 YYIDTQFSEKAINYFEKA--ALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDI 686 (840)
T ss_pred HHHhhHHHHHHHHHHHHH--HhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 888888889999998874 447899999999887765 579999999998763
No 106
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.04 E-value=0.086 Score=49.99 Aligned_cols=181 Identities=13% Similarity=0.065 Sum_probs=123.8
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C----------CCCCH--HHHHHHHHHHHh
Q 021583 72 VYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSK----G----------QGRTM--GTYFLLLNALAE 135 (310)
Q Consensus 72 ~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g----------~~p~~--~ty~~ll~~~~~ 135 (310)
+...+..+...|+ +..|+.|-..|....+.+-..+++..+... | -.|+. .++.-|-..|-.
T Consensus 130 ~~~yl~~~l~Kgv---PslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~ 206 (517)
T PF12569_consen 130 LDEYLRPQLRKGV---PSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDY 206 (517)
T ss_pred HHHHHHHHHhcCC---chHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHH
Confidence 5566677778886 345666666666666666667777766533 1 13444 355666788889
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 021583 136 DGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEK 215 (310)
Q Consensus 136 ~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ 215 (310)
.|+.++|+++.++..+.. |.-...|..--..|-+.|++++|.+.++.-+..... |...=+--...+.++|++++|.+
T Consensus 207 ~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~ 283 (517)
T PF12569_consen 207 LGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEK 283 (517)
T ss_pred hCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999888763 222348999999999999999999999998875432 66766777888899999999999
Q ss_pred HHHhCCCCcc-chheeccCcccCChhhhhHhhhc----cCCChhhHHhhhchh
Q 021583 216 LKKKYPPPKW-EYRYIKGKRVRIPAKPKYELDSA----TEGKTNEVETTKNPN 263 (310)
Q Consensus 216 l~~~~~p~~~-~~~~~~~~~~~~~~~~~~~li~~----~~g~~~~a~~~~~~m 263 (310)
++..+..... .... +..-..+|-.+-.+ +.|++..|.+.+...
T Consensus 284 ~~~~Ftr~~~~~~~~-----L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 284 TASLFTREDVDPLSN-----LNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred HHHhhcCCCCCcccC-----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9877543322 0110 01112244333333 888888887776433
No 107
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.04 E-value=0.079 Score=45.03 Aligned_cols=136 Identities=15% Similarity=0.135 Sum_probs=101.4
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 021583 73 YGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLD 152 (310)
Q Consensus 73 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~ 152 (310)
-++.+.+......-+..........|++.+++++|++..+.. -+......=+..+.+..+++-|++-+++|.+.
T Consensus 93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 344444555555555555666677889999999999998762 12333333355566778899999999999975
Q ss_pred CCCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 153 HLEGTPRIFFDKMISIYYN----RGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 153 ~~~~~~~~~y~~li~~~~~----~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
. +..|-+.|..++.+ .+.+..|.=+|++|-++ ..|+..+.+-+.-++...|++++|+.+++.
T Consensus 167 d----ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~e 232 (299)
T KOG3081|consen 167 D----EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEE 232 (299)
T ss_pred c----hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHH
Confidence 3 34667766666654 55689999999999764 578999999999999999999999999876
No 108
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.03 E-value=0.22 Score=45.82 Aligned_cols=127 Identities=17% Similarity=0.086 Sum_probs=98.9
Q ss_pred hHhHHHHHHhcC-CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 021583 55 SAKLVTCIKGLS-NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRT-MGTYFLLLNA 132 (310)
Q Consensus 55 ~~~~~~~l~~~~-~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~ty~~ll~~ 132 (310)
+..+..++..+. +..+.+...++.+...- +-|+.-.......+.+.++.++|.+.++.+... .|+ ....-++-++
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~a 383 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQA 383 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHH
Confidence 344555554433 55666778787765543 345666777788889999999999999998866 466 5666778899
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 021583 133 LAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADME 186 (310)
Q Consensus 133 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~ 186 (310)
|.+.|++++|..++++.....- .+...|..|-.+|...|+..++..-..++.
T Consensus 384 ll~~g~~~eai~~L~~~~~~~p--~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFNDP--EDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcCC--CCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 9999999999999999887653 555799999999999999999988776643
No 109
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.01 E-value=0.25 Score=48.62 Aligned_cols=164 Identities=12% Similarity=0.138 Sum_probs=118.7
Q ss_pred chHHHHHHHhcCcCchHhHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-
Q 021583 40 PRVWKARKRIGTISKSAKLVTCIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKG- 118 (310)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g- 118 (310)
|.+...+...+..-..|++.+| ..++.+..+.. +-....|-+|-..|-..|+.+++...+ +....
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA-----------~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~--llAAHL 202 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEA-----------EEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFW--LLAAHL 202 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHH-----------HHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHH--HHHHhc
Confidence 3455555555554334666666 88888888776 556789999999999999999987765 44333
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----
Q 021583 119 QGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNV---- 194 (310)
Q Consensus 119 ~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~---- 194 (310)
.+-|..-|..+-....+.|.+++|.-+|.+..+..- .+...+--=+.-|-+.|+...|+.-|.++....-..|.
T Consensus 203 ~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p--~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~ 280 (895)
T KOG2076|consen 203 NPKDYELWKRLADLSEQLGNINQARYCYSRAIQANP--SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIE 280 (895)
T ss_pred CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHH
Confidence 345678899999999999999999999999998753 44434444456678899999999999999875322232
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 195 SIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 195 ~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
.+--.+++.|...++.+.|.+.++.
T Consensus 281 d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 281 DLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 2233445667777888888888765
No 110
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.99 E-value=0.17 Score=46.57 Aligned_cols=192 Identities=11% Similarity=0.021 Sum_probs=130.7
Q ss_pred HhcCCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 021583 63 KGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEA 142 (310)
Q Consensus 63 ~~~~~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A 142 (310)
+.+++..-.+..-|+......-.++. .|-.+-..|....+.++....|+...... +-|..+|..--..+.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 33445555667777776665533332 27778888999999999999999877654 23445555555666666789999
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--
Q 021583 143 EELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKY-- 220 (310)
Q Consensus 143 ~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~-- 220 (310)
..=|++-++.. |-+...|-.+-.+..+.+++++++..|++..++ .+-....|+.....+...+++|+|.+.|+..
T Consensus 414 ~aDF~Kai~L~--pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 414 IADFQKAISLD--PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHhhcC--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 99999888653 344457888888888999999999999998764 2224588999999999999999999999762
Q ss_pred -CCCccchheeccCcccCChhhhhHhhhc-cCCChhhHHhhhchhhc
Q 021583 221 -PPPKWEYRYIKGKRVRIPAKPKYELDSA-TEGKTNEVETTKNPNES 265 (310)
Q Consensus 221 -~p~~~~~~~~~~~~~~~~~~~~~~li~~-~~g~~~~a~~~~~~m~~ 265 (310)
.|..... -+.+...+..+++-. =.+++..|++++..-.+
T Consensus 491 LE~~~~~~------~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e 531 (606)
T KOG0547|consen 491 LEPREHLI------IVNAAPLVHKALLVLQWKEDINQAENLLRKAIE 531 (606)
T ss_pred hccccccc------cccchhhhhhhHhhhchhhhHHHHHHHHHHHHc
Confidence 3331100 012223333333333 23677777777655443
No 111
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.97 E-value=0.14 Score=52.75 Aligned_cols=168 Identities=12% Similarity=0.013 Sum_probs=125.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 021583 90 TVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIY 169 (310)
Q Consensus 90 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~ 169 (310)
.|.++++.-..-|.-+...++|+...+.. ---..|..|..-|.+.+..++|-++|+.|.++-- -....|...+..+
T Consensus 1499 iWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fL 1574 (1710)
T KOG1070|consen 1499 IWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFL 1574 (1710)
T ss_pred HHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHH
Confidence 46666666666677788899999887663 1236778899999999999999999999988633 2234799999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCcccCChhhhhHhh
Q 021583 170 YNRGMHEKMFEIFADMEELGVRPNV---SIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELD 246 (310)
Q Consensus 170 ~~~g~~~~a~~l~~~m~~~g~~p~~---~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li 246 (310)
.+..+-+.|..++.+..+ +.|.. ....-.+..-.+.|+.+.+.-+|+..... + +-...+|+.++
T Consensus 1575 l~~ne~~aa~~lL~rAL~--~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a-----y------PKRtDlW~VYi 1641 (1710)
T KOG1070|consen 1575 LRQNEAEAARELLKRALK--SLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA-----Y------PKRTDLWSVYI 1641 (1710)
T ss_pred hcccHHHHHHHHHHHHHh--hcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh-----C------ccchhHHHHHH
Confidence 999999999999888665 34542 22223333345789999988888763211 1 33457899999
Q ss_pred hc--cCCChhhHHhhhchhhcCCCCCchhh
Q 021583 247 SA--TEGKTNEVETTKNPNESSEEPEAAAN 274 (310)
Q Consensus 247 ~~--~~g~~~~a~~~~~~m~~~~~~p~~~~ 274 (310)
+. +.|....+..+|++....+..|.-.-
T Consensus 1642 d~eik~~~~~~vR~lfeRvi~l~l~~kkmK 1671 (1710)
T KOG1070|consen 1642 DMEIKHGDIKYVRDLFERVIELKLSIKKMK 1671 (1710)
T ss_pred HHHHccCCHHHHHHHHHHHHhcCCChhHhH
Confidence 99 99999999999999999998885544
No 112
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.97 E-value=0.03 Score=50.66 Aligned_cols=102 Identities=11% Similarity=-0.047 Sum_probs=74.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCC
Q 021583 95 LKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGM 174 (310)
Q Consensus 95 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~ 174 (310)
-..+...|+++.|.+.|.+..... .-+...|..+-.+|.+.|++++|+..+++..+..- .+...|..+-.+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P--~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDP--SLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHhCC
Confidence 345567788888888888877652 33567777788888888888888888888877642 344578888888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 021583 175 HEKMFEIFADMEELGVRPNVSIVSMMG 201 (310)
Q Consensus 175 ~~~a~~l~~~m~~~g~~p~~~ty~~li 201 (310)
+++|...|+...+. .|+......++
T Consensus 86 ~~eA~~~~~~al~l--~P~~~~~~~~l 110 (356)
T PLN03088 86 YQTAKAALEKGASL--APGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 88888888887763 45543334333
No 113
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.95 E-value=0.079 Score=52.11 Aligned_cols=144 Identities=12% Similarity=0.030 Sum_probs=111.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHH
Q 021583 119 QGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPN-VSIV 197 (310)
Q Consensus 119 ~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~ty 197 (310)
...+...+-.|-......|+.++|+.+++...+.. |...-.+..+...+.+.+++++|...++..... .|+ ....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~ 157 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF--PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREI 157 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHH
Confidence 56678999999999999999999999999999863 344458999999999999999999999998874 465 5777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC-CCccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhcCCCCCchhh
Q 021583 198 SMMGNAFQKLGMLDKYEKLKKKYP-PPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNESSEEPEAAAN 274 (310)
Q Consensus 198 ~~li~~~~~~g~~~~a~~l~~~~~-p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~~~~~p~~~~ 274 (310)
..+-.++...|+.++|..+|++.. ++ ..+...+..+-.+ ..|+.++|...++.-...-- |-.+.
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~------------p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~-~~~~~ 224 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQH------------PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG-DGARK 224 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcC------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC-cchHH
Confidence 888889999999999999987732 11 1223333333333 68999999999877644222 34467
Q ss_pred hhhhh
Q 021583 275 LNESL 279 (310)
Q Consensus 275 ~~~ll 279 (310)
|+..+
T Consensus 225 ~~~~~ 229 (694)
T PRK15179 225 LTRRL 229 (694)
T ss_pred HHHHH
Confidence 77776
No 114
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.94 E-value=0.12 Score=49.12 Aligned_cols=147 Identities=7% Similarity=-0.021 Sum_probs=101.6
Q ss_pred cCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC--------CHHHHHHHHH
Q 021583 82 WELEFPLITVKKALKTLENEK-----DWKRIIQVTKWMLSKGQGRT-MGTYFLLLNALAEDG--------RLDEAEELWT 147 (310)
Q Consensus 82 ~~~~p~~~~~~~li~~~~~~~-----~~~~a~~~~~~m~~~g~~p~-~~ty~~ll~~~~~~g--------~~~~A~~~~~ 147 (310)
...+.+..+|...+.+..... +.+.|.++|++..+. .|+ ...|..+..++.... ++..+.+...
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 345567889999998865432 377899999998866 465 455555444333221 2334444444
Q ss_pred HHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh---CCCCc
Q 021583 148 KIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK---YPPPK 224 (310)
Q Consensus 148 ~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~---~~p~~ 224 (310)
+.......+.+...|.++--.+...|++++|...+++..+.+ |+...|..+...|...|+.++|...+++ +.|..
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 433322223344578887666667899999999999988865 7889999999999999999999999986 56776
Q ss_pred cchheecc
Q 021583 225 WEYRYIKG 232 (310)
Q Consensus 225 ~~~~~~~~ 232 (310)
.+|..+..
T Consensus 487 pt~~~~~~ 494 (517)
T PRK10153 487 NTLYWIEN 494 (517)
T ss_pred chHHHHHh
Confidence 66655333
No 115
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.93 E-value=0.0035 Score=43.87 Aligned_cols=81 Identities=14% Similarity=0.158 Sum_probs=55.0
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHH
Q 021583 101 EKDWKRIIQVTKWMLSKGQ-GRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMF 179 (310)
Q Consensus 101 ~~~~~~a~~~~~~m~~~g~-~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~ 179 (310)
.|+++.|..+|+.+.+..- .++...+-.+-..|.+.|++++|.+++++ .+.+. .+....-.+-.+|.+.|++++|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~--~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP--SNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH--CHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC--CCHHHHHHHHHHHHHhCCHHHHH
Confidence 5788899999998886532 12444444578888899999999999988 32222 22223334577788899999999
Q ss_pred HHHHH
Q 021583 180 EIFAD 184 (310)
Q Consensus 180 ~l~~~ 184 (310)
+++++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88865
No 116
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.88 E-value=0.022 Score=43.23 Aligned_cols=84 Identities=13% Similarity=0.107 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH---------------HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 021583 87 PLITVKKALKTLENEKDWKRIIQVTKWML---------------SKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFL 151 (310)
Q Consensus 87 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~---------------~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~ 151 (310)
|..++.++|.++++.|+.+....+.+..= .....||..+..+++.+|+.+|++..|+++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 35677788888888888888777776431 112345666666666666666666666666665554
Q ss_pred c-CCCCChHHHHHHHHHHHHH
Q 021583 152 D-HLEGTPRIFFDKMISIYYN 171 (310)
Q Consensus 152 ~-~~~~~~~~~y~~li~~~~~ 171 (310)
. ++ +.+..+|..|+.....
T Consensus 81 ~Y~I-~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 81 KYPI-PIPKEFWRRLLEWAYV 100 (126)
T ss_pred HcCC-CCCHHHHHHHHHHHHH
Confidence 4 33 4555566666665443
No 117
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.84 E-value=0.1 Score=48.58 Aligned_cols=146 Identities=11% Similarity=0.101 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 69 KEEVYGALDSFIAW-ELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGR-TMGTYFLLLNALAEDGRLDEAEELW 146 (310)
Q Consensus 69 ~~~~~~~~~~m~~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~g~~~~A~~~~ 146 (310)
.+++.++.+++... ...|+ .+|..+|+.-.+..-++.|+.+|.+.++.+..+ .+++++++|.-||. ++..-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 44467777776654 44444 467788999889989999999999999888877 89999999998885 6778899999
Q ss_pred HH-HHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 147 TK-IFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNV--SIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 147 ~~-m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~--~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
+- |+.-|- .| .--+..+..+.+.++-..+..+|+.....++.||. ..|..+|.-=..-|++..+.++-++
T Consensus 425 eLGLkkf~d--~p-~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR 497 (656)
T KOG1914|consen 425 ELGLKKFGD--SP-EYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKR 497 (656)
T ss_pred HHHHHhcCC--Ch-HHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 84 554443 33 33566778888899999999999999988777774 8999999999999999999988765
No 118
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.053 Score=50.57 Aligned_cols=132 Identities=15% Similarity=0.026 Sum_probs=102.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC-hHHHHHHHHHHHH
Q 021583 96 KTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLD----HLEGT-PRIFFDKMISIYY 170 (310)
Q Consensus 96 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~----~~~~~-~~~~y~~li~~~~ 170 (310)
--|.+.++++.|.++|.+.... .+-|....+-+--.....+.+.+|..+|+.-.+. +-+.+ -..+++.|=.+|.
T Consensus 388 mey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R 466 (611)
T KOG1173|consen 388 MEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR 466 (611)
T ss_pred HHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH
Confidence 4567788999999999887655 3557788888777777889999999999876622 11111 1237999999999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh---CCCCccchhe
Q 021583 171 NRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK---YPPPKWEYRY 229 (310)
Q Consensus 171 ~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~---~~p~~~~~~~ 229 (310)
+.+..++|+..++.-.... +-|..||.++-..|...|++|.|...|.+ +.|+...-..
T Consensus 467 kl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~ 527 (611)
T KOG1173|consen 467 KLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISE 527 (611)
T ss_pred HHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHH
Confidence 9999999999999977642 33789999999999999999999999987 5677654443
No 119
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.75 E-value=0.0059 Score=52.12 Aligned_cols=84 Identities=19% Similarity=0.065 Sum_probs=67.3
Q ss_pred cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH----------------HHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 021583 68 VKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDW----------------KRIIQVTKWMLSKGQGRTMGTYFLLLN 131 (310)
Q Consensus 68 ~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~----------------~~a~~~~~~m~~~g~~p~~~ty~~ll~ 131 (310)
-++-.+-.++.|.+.|++-|..+|+.||+.+-+.+-. +=+.+++++|+..|+.||..+-..|++
T Consensus 87 HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn 166 (406)
T KOG3941|consen 87 HVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVN 166 (406)
T ss_pred hHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHH
Confidence 3445677788999999999999999999998774421 337899999999999999999999999
Q ss_pred HHHhcCCH-HHHHHHHHHHHh
Q 021583 132 ALAEDGRL-DEAEELWTKIFL 151 (310)
Q Consensus 132 ~~~~~g~~-~~A~~~~~~m~~ 151 (310)
++++.+-. .+..+++--|.+
T Consensus 167 ~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 167 AFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HhccccccHHHHHHHHHhhhh
Confidence 99998875 344555444443
No 120
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.75 E-value=0.048 Score=43.58 Aligned_cols=113 Identities=14% Similarity=0.121 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh-HHHHHHHHHHHHHcCCHHHHHHH
Q 021583 104 WKRIIQVTKWML-SKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTP-RIFFDKMISIYYNRGMHEKMFEI 181 (310)
Q Consensus 104 ~~~a~~~~~~m~-~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~y~~li~~~~~~g~~~~a~~l 181 (310)
+..+...+..+. ..+..--...|..+...+...|++++|+..|++.......+.+ ..+|..+-..|...|++++|++.
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 334444444443 2322234567788888888999999999999998876432222 24899999999999999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHH-------hcCCHHHHHHHHH
Q 021583 182 FADMEELGVRPN-VSIVSMMGNAFQ-------KLGMLDKYEKLKK 218 (310)
Q Consensus 182 ~~~m~~~g~~p~-~~ty~~li~~~~-------~~g~~~~a~~l~~ 218 (310)
++..... .|+ ..++..+...|. ..|+++.|...++
T Consensus 95 ~~~Al~~--~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 95 YFQALER--NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHh--CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 9998764 343 466667777776 7888887666654
No 121
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.70 E-value=0.0085 Score=39.81 Aligned_cols=51 Identities=20% Similarity=0.209 Sum_probs=24.4
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 021583 135 EDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEE 187 (310)
Q Consensus 135 ~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~ 187 (310)
+.|++++|.++|+++.+..- .+...+-.+..+|.+.|++++|.++++.+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNP--DNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTT--TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555555555555544431 2333444455555555555555555555443
No 122
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.70 E-value=0.036 Score=42.08 Aligned_cols=86 Identities=8% Similarity=0.000 Sum_probs=70.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--------------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 021583 122 TMGTYFLLLNALAEDGRLDEAEELWTKIFLDHL--------------EGTPRIFFDKMISIYYNRGMHEKMFEIFADMEE 187 (310)
Q Consensus 122 ~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~--------------~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~ 187 (310)
|..++.++|.++++.|+++...++.+..-.-++ ..|+..+-.+++.+|+..|++..|+++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 567899999999999999999999877553221 125556899999999999999999999999876
Q ss_pred C-CCCCCHHHHHHHHHHHHhc
Q 021583 188 L-GVRPNVSIVSMMGNAFQKL 207 (310)
Q Consensus 188 ~-g~~p~~~ty~~li~~~~~~ 207 (310)
. +++.+..+|..|++-+...
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHh
Confidence 5 7887889999999876544
No 123
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.68 E-value=0.17 Score=47.22 Aligned_cols=150 Identities=12% Similarity=0.036 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 021583 104 WKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFA 183 (310)
Q Consensus 104 ~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~ 183 (310)
.+.....++..+..-..--..+|..+|+.--+..-+.-|..+|.+.++.+.......+++++|.-|| .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 6667778888775544444588999999999999999999999999999875445569999999999 688899999998
Q ss_pred HHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhh
Q 021583 184 DMEELGVRPNV-SIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTK 260 (310)
Q Consensus 184 ~m~~~g~~p~~-~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~ 260 (310)
-=... -+|. .--...+.-+...++-..|.-+|++..+....- .-...+|+.+++. .-|+...+.++-
T Consensus 426 LGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~--------~ks~~Iw~r~l~yES~vGdL~si~~le 495 (656)
T KOG1914|consen 426 LGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSA--------DKSKEIWDRMLEYESNVGDLNSILKLE 495 (656)
T ss_pred HHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCCh--------hhhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 75443 2343 333566677788888889999988754331111 2235788999988 899999888877
Q ss_pred chhh
Q 021583 261 NPNE 264 (310)
Q Consensus 261 ~~m~ 264 (310)
+++.
T Consensus 496 kR~~ 499 (656)
T KOG1914|consen 496 KRRF 499 (656)
T ss_pred HHHH
Confidence 6654
No 124
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.64 E-value=0.082 Score=44.94 Aligned_cols=110 Identities=10% Similarity=0.055 Sum_probs=66.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Q 021583 95 LKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAE----DGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYY 170 (310)
Q Consensus 95 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~ 170 (310)
...+.+..+++-|...++.|.+.. +-.|.+.|-.++.+ .+.+++|.-+|++|-++-. ++..+-|-...++.
T Consensus 144 VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~--~T~~llnG~Av~~l 218 (299)
T KOG3081|consen 144 VQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTP--PTPLLLNGQAVCHL 218 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccC--CChHHHccHHHHHH
Confidence 444556667777777777777552 34555555555443 3557777777777776432 44456777777777
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 021583 171 NRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGML 210 (310)
Q Consensus 171 ~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 210 (310)
..|++++|+.++++...+.-. +..|...+|-+--..|.-
T Consensus 219 ~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 219 QLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKD 257 (299)
T ss_pred HhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCC
Confidence 777777777777777655332 344444444443334443
No 125
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.60 E-value=0.031 Score=47.84 Aligned_cols=107 Identities=22% Similarity=0.292 Sum_probs=79.2
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChH
Q 021583 85 EFPLITVKKALKTLEN-----EKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPR 159 (310)
Q Consensus 85 ~p~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 159 (310)
+-|-.+|-..+..|.. .+.++-....+..|++.|+..|..+|+.||+.+=|..- .|.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf------------------iP~ 125 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF------------------IPQ 125 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc------------------ccH
Confidence 3456677777777754 35677788888999999999999999999988765322 232
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 021583 160 IFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLD 211 (310)
Q Consensus 160 ~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 211 (310)
..|..+.-.|-+ +-+.+.+++++|...|+.||..+-.+|+++|++.+..-
T Consensus 126 nvfQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 126 NVFQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred HHHHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccH
Confidence 333333333332 34568999999999999999999999999999877653
No 126
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.59 E-value=0.024 Score=44.14 Aligned_cols=72 Identities=18% Similarity=0.268 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HCCCCCCHHHH
Q 021583 124 GTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADME-----ELGVRPNVSIV 197 (310)
Q Consensus 124 ~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~-----~~g~~p~~~ty 197 (310)
.+...++..+...|++++|..+.+.+.... |.+...|-.+|.+|...|+..+|.++|+.+. +-|+.|+..|-
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d--P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD--PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 344667777888999999999999999875 4777899999999999999999999998874 35999987653
No 127
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.57 E-value=0.21 Score=37.59 Aligned_cols=107 Identities=14% Similarity=0.099 Sum_probs=70.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CChHHHHHHHHHHHHH
Q 021583 95 LKTLENEKDWKRIIQVTKWMLSKGQGRT--MGTYFLLLNALAEDGRLDEAEELWTKIFLDHLE-GTPRIFFDKMISIYYN 171 (310)
Q Consensus 95 i~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~y~~li~~~~~ 171 (310)
-.++-..|+.++|..+|+.-...|+... ...+-.+-..|...|+.++|+.+|++.....-. +.+......+--++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 4456667888888888888888877654 345666777788888888888888887765210 0122223334446778
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 021583 172 RGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQ 205 (310)
Q Consensus 172 ~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 205 (310)
.|+.++|++.+-.... ++...|.--|..|.
T Consensus 88 ~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 88 LGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred CCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 8888888887766553 33345555555554
No 128
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.55 E-value=0.016 Score=38.47 Aligned_cols=64 Identities=19% Similarity=0.342 Sum_probs=49.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 021583 99 ENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMI 166 (310)
Q Consensus 99 ~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li 166 (310)
.+.|++++|.++|+...... +-+...+-.+...|.+.|++++|.++++++.... ++...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~---~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD---PDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG---TTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---cCHHHHHHHH
Confidence 46799999999999988662 3377788889999999999999999999998874 3334455444
No 129
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=96.44 E-value=0.12 Score=49.81 Aligned_cols=160 Identities=11% Similarity=-0.014 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH------------------
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKI------------------ 149 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m------------------ 149 (310)
...|.-.|.+|+..|+.++|..+...-.+ -.||..-|..+.+......-+++|.++++..
T Consensus 424 lemw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~f 501 (777)
T KOG1128|consen 424 LEMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDF 501 (777)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhH
Confidence 45677888999999998898888877666 3688888888877665555556666665432
Q ss_pred ----------HhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 021583 150 ----------FLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPN-VSIVSMMGNAFQKLGMLDKYEKLKK 218 (310)
Q Consensus 150 ----------~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~l~~ 218 (310)
.+.+. ...-+|-.+=.+..+.++++.|.+.|..-.. ..|| ...||++-.+|.+.|+..+|...++
T Consensus 502 s~~~~hle~sl~~np--lq~~~wf~~G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~ 577 (777)
T KOG1128|consen 502 SEADKHLERSLEINP--LQLGTWFGLGCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLK 577 (777)
T ss_pred HHHHHHHHHHhhcCc--cchhHHHhccHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHH
Confidence 22211 2223555555566688889999888887654 5676 4889999999999999999999987
Q ss_pred h-CCCCccchheeccCcccCChhhhh--HhhhccCCChhhHHhhhchhhc
Q 021583 219 K-YPPPKWEYRYIKGKRVRIPAKPKY--ELDSATEGKTNEVETTKNPNES 265 (310)
Q Consensus 219 ~-~~p~~~~~~~~~~~~~~~~~~~~~--~li~~~~g~~~~a~~~~~~m~~ 265 (310)
+ ++-+ --++.+|. .++...-|.+++|.+.+.++..
T Consensus 578 EAlKcn------------~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 578 EALKCN------------YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHhhcC------------CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 6 2211 11222332 2333367888888887766643
No 130
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=96.41 E-value=0.03 Score=55.21 Aligned_cols=114 Identities=14% Similarity=0.206 Sum_probs=63.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHH
Q 021583 101 EKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFE 180 (310)
Q Consensus 101 ~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~ 180 (310)
.+..++|+++|.+.... ..-|.++-|-+--.++.+|++.+|..+|.+.++...+ ...+|-.+-+.|..+|++-.|++
T Consensus 625 kk~~~KAlq~y~kvL~~-dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~--~~dv~lNlah~~~e~~qy~~AIq 701 (1018)
T KOG2002|consen 625 KKHQEKALQLYGKVLRN-DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD--FEDVWLNLAHCYVEQGQYRLAIQ 701 (1018)
T ss_pred HHHHHHHHHHHHHHHhc-CcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh--CCceeeeHHHHHHHHHHHHHHHH
Confidence 34555666666655543 2345555555555566666666666666666655431 11246666666666666666666
Q ss_pred HHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 181 IFADMEEL-GVRPNVSIVSMMGNAFQKLGMLDKYEKLK 217 (310)
Q Consensus 181 l~~~m~~~-g~~p~~~ty~~li~~~~~~g~~~~a~~l~ 217 (310)
.|+...+. .-.-+......|.+++-+.|++.+|.+..
T Consensus 702 mYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~l 739 (1018)
T KOG2002|consen 702 MYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEAL 739 (1018)
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 66654433 32334555566666666666666665554
No 131
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.40 E-value=0.061 Score=48.71 Aligned_cols=86 Identities=15% Similarity=0.055 Sum_probs=74.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 021583 130 LNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRP-NVSIVSMMGNAFQKLG 208 (310)
Q Consensus 130 l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g 208 (310)
-..+...|++++|++.|++..+..- .+...|..+-.+|.+.|++++|+..++...+. .| +...|..+..+|...|
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P--~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDP--NNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 4566788999999999999998753 45568999999999999999999999998874 35 5678889999999999
Q ss_pred CHHHHHHHHHh
Q 021583 209 MLDKYEKLKKK 219 (310)
Q Consensus 209 ~~~~a~~l~~~ 219 (310)
++++|...|++
T Consensus 85 ~~~eA~~~~~~ 95 (356)
T PLN03088 85 EYQTAKAALEK 95 (356)
T ss_pred CHHHHHHHHHH
Confidence 99999999975
No 132
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.34 E-value=0.43 Score=38.61 Aligned_cols=133 Identities=9% Similarity=-0.036 Sum_probs=103.0
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHH
Q 021583 81 AWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRI 160 (310)
Q Consensus 81 ~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 160 (310)
+....|++..--.|-++..+.|++.+|...|++-..--+.-|....-.+-++....+++..|...++++.+.+-.-.+..
T Consensus 82 ~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd 161 (251)
T COG4700 82 ELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD 161 (251)
T ss_pred HHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC
Confidence 34667888888889999999999999999999988666778888888889999999999999999999988753211123
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 021583 161 FFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEK 215 (310)
Q Consensus 161 ~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ 215 (310)
+.-.+-.+|...|+...|+.-|+..... -|+...-...-.-+.+.|+.+++..
T Consensus 162 ~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 162 GHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred chHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 5666778888999999999999988763 4655333333345677887776643
No 133
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.26 E-value=0.19 Score=40.31 Aligned_cols=86 Identities=22% Similarity=0.262 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHH
Q 021583 122 TMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTP-RIFFDKMISIYYNRGMHEKMFEIFADMEELGVRP-NVSIVSM 199 (310)
Q Consensus 122 ~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~ 199 (310)
....|..+...|...|++++|...|++..+..-.+.. ...|..+-..|.+.|++++|.+.+.+..+. .| +...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 3566788888899999999999999998876442222 357999999999999999999999998764 35 4566777
Q ss_pred HHHHHHhcCC
Q 021583 200 MGNAFQKLGM 209 (310)
Q Consensus 200 li~~~~~~g~ 209 (310)
+..+|...|+
T Consensus 112 lg~~~~~~g~ 121 (172)
T PRK02603 112 IAVIYHKRGE 121 (172)
T ss_pred HHHHHHHcCC
Confidence 7777877666
No 134
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.24 E-value=0.14 Score=40.28 Aligned_cols=86 Identities=7% Similarity=-0.021 Sum_probs=51.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 021583 131 NALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGML 210 (310)
Q Consensus 131 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 210 (310)
..+...|++++|.++|+-+..... -+..-|-.|-..+-..|++++|...|........ -|...+-.+-.++...|+.
T Consensus 43 ~~ly~~G~l~~A~~~f~~L~~~Dp--~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 43 MQLMEVKEFAGAARLFQLLTIYDA--WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCH
Confidence 334556666666666666665542 3334555666666666666666666666655431 2456666666666666777
Q ss_pred HHHHHHHHh
Q 021583 211 DKYEKLKKK 219 (310)
Q Consensus 211 ~~a~~l~~~ 219 (310)
+.|.+-|+.
T Consensus 120 ~~A~~aF~~ 128 (157)
T PRK15363 120 CYAIKALKA 128 (157)
T ss_pred HHHHHHHHH
Confidence 666666643
No 135
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.18 E-value=0.35 Score=50.00 Aligned_cols=128 Identities=17% Similarity=0.192 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 021583 89 ITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISI 168 (310)
Q Consensus 89 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~ 168 (310)
..|.+|...|.+.+.+++|-++++.|.+. ..-....|...+..+.++.+-+.|..++.+..+.--+.-..-.-.-.+.-
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 45667777777777777777777777644 22455667777777777777777777766655431100000112222222
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 169 YYNRGMHEKMFEIFADMEELGVRP-NVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 169 ~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
-.+.|+.+.+..+|+...... | -.-.|+..|+.=.+.|+.+.+..+|++
T Consensus 1610 EFk~GDaeRGRtlfEgll~ay--PKRtDlW~VYid~eik~~~~~~vR~lfeR 1659 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAY--PKRTDLWSVYIDMEIKHGDIKYVRDLFER 1659 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhC--ccchhHHHHHHHHHHccCCHHHHHHHHHH
Confidence 235667777777777666532 2 235566667777777777777777765
No 136
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.14 E-value=0.049 Score=35.73 Aligned_cols=55 Identities=18% Similarity=0.245 Sum_probs=31.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 021583 131 NALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEE 187 (310)
Q Consensus 131 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~ 187 (310)
..+.+.|++++|++.|++..+.. |.+...|..+-..+...|++++|...|++..+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44556666666666666666554 23334566666666666666666666666543
No 137
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.13 E-value=0.21 Score=37.58 Aligned_cols=87 Identities=20% Similarity=0.200 Sum_probs=67.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHH
Q 021583 130 LNALAEDGRLDEAEELWTKIFLDHLEGTPR-IFFDKMISIYYNRGMHEKMFEIFADMEELGVRPN----VSIVSMMGNAF 204 (310)
Q Consensus 130 l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~----~~ty~~li~~~ 204 (310)
-.++-..|+.++|..+|++-...|+..... ..+-.+-.+|...|+.++|..++++..... |+ ......+.-++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHH
Confidence 345667899999999999999998853332 377788899999999999999999987642 43 22223344577
Q ss_pred HhcCCHHHHHHHHH
Q 021583 205 QKLGMLDKYEKLKK 218 (310)
Q Consensus 205 ~~~g~~~~a~~l~~ 218 (310)
...|+.++|..++-
T Consensus 86 ~~~gr~~eAl~~~l 99 (120)
T PF12688_consen 86 YNLGRPKEALEWLL 99 (120)
T ss_pred HHCCCHHHHHHHHH
Confidence 88999999988863
No 138
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.11 E-value=0.18 Score=43.62 Aligned_cols=97 Identities=11% Similarity=0.106 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh-HHHHH
Q 021583 89 ITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTM----GTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTP-RIFFD 163 (310)
Q Consensus 89 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~y~ 163 (310)
..|...+..+.+.|++++|...|+.+.+. .|+. .++--+-..|...|++++|...|+.+.+..-..+. ...+-
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34555555555667777777777776644 1322 34445566666777777777777776654221111 11333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 021583 164 KMISIYYNRGMHEKMFEIFADMEE 187 (310)
Q Consensus 164 ~li~~~~~~g~~~~a~~l~~~m~~ 187 (310)
.+...|...|+.++|.++|+...+
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455566777777777766654
No 139
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.10 E-value=0.74 Score=39.05 Aligned_cols=147 Identities=11% Similarity=0.048 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHH---cC-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHH
Q 021583 69 KEEVYGALDSFIA---WE-LEFPLI-TVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLL-LNALAEDGRLDEA 142 (310)
Q Consensus 69 ~~~~~~~~~~m~~---~~-~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~l-l~~~~~~g~~~~A 142 (310)
.+++.+++.++.. .| ..++.. .|..++-+....|+.+.|...++.+...- |+..-...| -.-+-..|..++|
T Consensus 28 seevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 28 SEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred HHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhH
Confidence 4555666666552 34 556664 46777777788899999999999988663 554333333 2234456889999
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 021583 143 EELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKY 220 (310)
Q Consensus 143 ~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~ 220 (310)
+++++.+.+.. |.+.++|--=+...-..|+..+|++-+++..+. +.-|...|.-|..-|...|++++|.-.++++
T Consensus 106 ~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 106 IEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred HHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999999886 577788888888888889888998888887765 3468999999999999999999999998873
No 140
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.10 E-value=0.79 Score=46.24 Aligned_cols=130 Identities=12% Similarity=0.137 Sum_probs=77.7
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH---------------
Q 021583 83 ELEF-PLITVKKALKTLENEKDWKRIIQVTKWMLSKG-QGRTMGTYFLLLNALAEDGRLDEAEEL--------------- 145 (310)
Q Consensus 83 ~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~ty~~ll~~~~~~g~~~~A~~~--------------- 145 (310)
+..| +...+..|+..+...+++++|.++.+.-.+.. -.+..+-|..+ .+...++.+++.-+
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~--l~~q~~~~~~~~lv~~l~~~~~~~~~~~v 102 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGI--LSLSRRPLNDSNLLNLIDSFSQNLKWAIV 102 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHH--HHHhhcchhhhhhhhhhhhcccccchhHH
Confidence 4444 35677788888878888888888877544331 11222222222 34444444443333
Q ss_pred ---HHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 146 ---WTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 146 ---~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
.+.|.+.+ .+...+-.|..+|-+.|+.++|..+++++.+.. .-|+...|.+...|... ++++|.+++.+
T Consensus 103 e~~~~~i~~~~---~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~K 174 (906)
T PRK14720 103 EHICDKILLYG---ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKK 174 (906)
T ss_pred HHHHHHHHhhh---hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 22222211 122355566677777788888888888888765 22577788888888888 88888777753
No 141
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.09 E-value=0.047 Score=52.58 Aligned_cols=132 Identities=11% Similarity=0.086 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 021583 69 KEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTK 148 (310)
Q Consensus 69 ~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~ 148 (310)
+.++..+++.+.+++.. ..-|..+...|...|+++.|.++|-+- ..++--|..|.++|+|++|.++-++
T Consensus 748 w~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e 816 (1636)
T KOG3616|consen 748 WKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEE 816 (1636)
T ss_pred hhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHH
Confidence 44556666665554421 234666677777778888887777541 2345567778888888877777655
Q ss_pred HHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 021583 149 IFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPP 223 (310)
Q Consensus 149 m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~ 223 (310)
..... ...+.|-+-..-+-+.|++.+|+++|-... .|+. .|..|-+.|..|...++.++..|+
T Consensus 817 ~~~~e---~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~d 879 (1636)
T KOG3616|consen 817 CHGPE---ATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGD 879 (1636)
T ss_pred hcCch---hHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhChh
Confidence 44321 222456666666667777777777665433 2443 234566667777766666654444
No 142
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.03 E-value=0.067 Score=50.00 Aligned_cols=112 Identities=11% Similarity=0.061 Sum_probs=91.2
Q ss_pred CHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 021583 103 DWKRIIQVTKWML-SKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEI 181 (310)
Q Consensus 103 ~~~~a~~~~~~m~-~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l 181 (310)
.+.+..++|-++- ..+.++|...++.|--.|--.|++++|...|+...+.. |-|...||-|=.++++..+.++|+..
T Consensus 409 ~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~--Pnd~~lWNRLGAtLAN~~~s~EAIsA 486 (579)
T KOG1125|consen 409 HLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK--PNDYLLWNRLGATLANGNRSEEAISA 486 (579)
T ss_pred HHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC--CchHHHHHHhhHHhcCCcccHHHHHH
Confidence 3455666666655 66667899999999999999999999999999988763 45556999999999999999999999
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHH
Q 021583 182 FADMEELGVRPNV-SIVSMMGNAFQKLGMLDKYEKLKK 218 (310)
Q Consensus 182 ~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~a~~l~~ 218 (310)
|++..+ ++|+- ...-.|--+|...|.+++|.+.|-
T Consensus 487 Y~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 487 YNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 999776 57763 444455566999999999988864
No 143
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.24 Score=46.39 Aligned_cols=134 Identities=11% Similarity=0.012 Sum_probs=100.0
Q ss_pred cHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC---C-CCHHHHHHHHHHHHhcCCHH
Q 021583 68 VKEEVYGALDSFIAWELEF-PLITVKKALKTLENEKDWKRIIQVTKWMLSK--GQ---G-RTMGTYFLLLNALAEDGRLD 140 (310)
Q Consensus 68 ~~~~~~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~---~-p~~~ty~~ll~~~~~~g~~~ 140 (310)
..+.|.+.|.+.. ++-| |+...+-+--.....+.+.+|..+|+..... .+ + .-.-+++.|-++|.+.+..+
T Consensus 395 n~kLAe~Ff~~A~--ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~ 472 (611)
T KOG1173|consen 395 NLKLAEKFFKQAL--AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYE 472 (611)
T ss_pred cHHHHHHHHHHHH--hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHH
Confidence 3444555555443 4444 5666776666666778899999999986621 11 1 13456889999999999999
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 021583 141 EAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKL 207 (310)
Q Consensus 141 ~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 207 (310)
+|...|++-.... +.+..+|.++--.|...|+++.|.+.|..-. .+.||-.+...++..+...
T Consensus 473 eAI~~~q~aL~l~--~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 473 EAIDYYQKALLLS--PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHHHHcC--CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHHh
Confidence 9999999988775 3666799999999999999999999999855 4789887777777755543
No 144
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.94 E-value=0.049 Score=35.75 Aligned_cols=58 Identities=21% Similarity=0.292 Sum_probs=48.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 021583 94 ALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLD 152 (310)
Q Consensus 94 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~ 152 (310)
+-..+.+.|++++|.+.|+...+.. .-+...+..+-..+...|++++|...|++..+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3467889999999999999999775 336788888899999999999999999998765
No 145
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.91 E-value=0.18 Score=43.99 Aligned_cols=164 Identities=15% Similarity=0.088 Sum_probs=101.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCC--HHHHHHHHHHHHhc-CCHHHHHHHHHHHHhc----CCCCCh
Q 021583 90 TVKKALKTLENEKDWKRIIQVTKWML----SKGQGRT--MGTYFLLLNALAED-GRLDEAEELWTKIFLD----HLEGTP 158 (310)
Q Consensus 90 ~~~~li~~~~~~~~~~~a~~~~~~m~----~~g~~p~--~~ty~~ll~~~~~~-g~~~~A~~~~~~m~~~----~~~~~~ 158 (310)
.|......|.+. ++++|.+.++... ..| .|+ ..++..+-..|-.. |++++|.+.|++-.+. +. +..
T Consensus 77 ~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~-~~~ 153 (282)
T PF14938_consen 77 AYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS-PHS 153 (282)
T ss_dssp HHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHH
T ss_pred HHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC-hhh
Confidence 455555555444 7777777777644 233 233 34666677778888 8999999999876543 32 122
Q ss_pred H-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-----CCCH-HHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheec
Q 021583 159 R-IFFDKMISIYYNRGMHEKMFEIFADMEELGV-----RPNV-SIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIK 231 (310)
Q Consensus 159 ~-~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~-----~p~~-~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~ 231 (310)
. .++..+...+.+.|++++|.++|++....-. +++. ..|-..+-++...|+.-.|.+.|++.......|..
T Consensus 154 a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~-- 231 (282)
T PF14938_consen 154 AAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS-- 231 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT--
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC--
Confidence 2 3788899999999999999999999876432 2233 23334445777889999999998873322111222
Q ss_pred cCcccCChhhhhHhhhc-cCCChhhHHhhhch
Q 021583 232 GKRVRIPAKPKYELDSA-TEGKTNEVETTKNP 262 (310)
Q Consensus 232 ~~~~~~~~~~~~~li~~-~~g~~~~a~~~~~~ 262 (310)
.....+...|+++ ..|+.+...+.+..
T Consensus 232 ----s~E~~~~~~l~~A~~~~D~e~f~~av~~ 259 (282)
T PF14938_consen 232 ----SREYKFLEDLLEAYEEGDVEAFTEAVAE 259 (282)
T ss_dssp ----SHHHHHHHHHHHHHHTT-CCCHHHHCHH
T ss_pred ----cHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 2234556678888 77777666555543
No 146
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.86 E-value=1.1 Score=42.34 Aligned_cols=134 Identities=11% Similarity=0.079 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CC--
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTK--------WMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLD---HL-- 154 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~--------~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~---~~-- 154 (310)
....-.++......|+++.|.+++. .+.+.+..|..+ ..++..+.+.++.+.|-+++++-... ..
T Consensus 376 ~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~ 453 (652)
T KOG2376|consen 376 KVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTG 453 (652)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCCccHHHHHHHHHHHHHHhccc
Confidence 4455677788889999999999999 666777777655 45666677777766666666554422 11
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCcc
Q 021583 155 EGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKW 225 (310)
Q Consensus 155 ~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~ 225 (310)
...-..+|--+...-.+.|..++|..+++++.+.. .+|..+...++.+|++. +.++|+.+-+.+.|...
T Consensus 454 s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~p~~~ 522 (652)
T KOG2376|consen 454 SIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKLPPLKG 522 (652)
T ss_pred chHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcCCCccc
Confidence 01112356666667778999999999999999754 46889999999999998 78899999888766543
No 147
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.83 E-value=0.098 Score=34.67 Aligned_cols=61 Identities=18% Similarity=0.175 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcC-CHHHHHHHHHHH
Q 021583 123 MGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRG-MHEKMFEIFADM 185 (310)
Q Consensus 123 ~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g-~~~~a~~l~~~m 185 (310)
..+|..+-..+...|++++|+..|++..+.. |.+...|..+-.+|...| ++++|++.++.-
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 3445555555555555555555555555543 233335555555555555 455555555543
No 148
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.78 E-value=0.13 Score=45.67 Aligned_cols=108 Identities=14% Similarity=0.164 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMIS 167 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~ 167 (310)
..+.+..|.-+...|+...|.++-.+. + -|+..-|-.-|.+|+..++|++-+++.+. +. . .+.|-.++.
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kK---s-PIGyepFv~ 245 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS---KK---S-PIGYEPFVE 245 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CC---C-CCChHHHHH
Confidence 346667777777888887777775443 2 37778888888888888888887776543 11 1 256888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 021583 168 IYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKL 216 (310)
Q Consensus 168 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l 216 (310)
+|.+.|+..+|..++.. +. +.--+..|.+.|++.+|.+.
T Consensus 246 ~~~~~~~~~eA~~yI~k-----~~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 246 ACLKYGNKKEASKYIPK-----IP-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHCCCHHHHHHHHHh-----CC-----hHHHHHHHHHCCCHHHHHHH
Confidence 88888888888887776 22 34556677888888887666
No 149
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.72 E-value=0.3 Score=46.02 Aligned_cols=114 Identities=11% Similarity=0.129 Sum_probs=62.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHH--HHHHHH
Q 021583 93 KALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDK--MISIYY 170 (310)
Q Consensus 93 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~--li~~~~ 170 (310)
+=++-+.+.+++++|....+.+...+ +-|...+.+-+-++.+.+.+++|+++.+.=. . . .++|. +=.+||
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~---~--~--~~~~~~~fEKAYc 88 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNG---A--L--LVINSFFFEKAYC 88 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc---h--h--hhcchhhHHHHHH
Confidence 34555666667777777777666554 4445666666666667677777764433211 1 0 11222 244444
Q ss_pred --HcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 171 --NRGMHEKMFEIFADMEELGVRPNV-SIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 171 --~~g~~~~a~~l~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
+.+..|+|.+.++ |+.++. .+...-...|-+.|++++|.++|+.
T Consensus 89 ~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~ 135 (652)
T KOG2376|consen 89 EYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQH 135 (652)
T ss_pred HHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4666677666666 333332 2444444455666777777777654
No 150
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.63 E-value=0.077 Score=36.21 Aligned_cols=60 Identities=23% Similarity=0.272 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 021583 125 TYFLLLNALAEDGRLDEAEELWTKIFLD----HLEGTP-RIFFDKMISIYYNRGMHEKMFEIFAD 184 (310)
Q Consensus 125 ty~~ll~~~~~~g~~~~A~~~~~~m~~~----~~~~~~-~~~y~~li~~~~~~g~~~~a~~l~~~ 184 (310)
+|+.+-..|...|++++|++.|++..+. |-..+. ..+++.+-..|...|++++|++.+++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444444555555555555555444322 100011 12455555555555555555555444
No 151
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.61 E-value=1.3 Score=37.88 Aligned_cols=159 Identities=13% Similarity=0.074 Sum_probs=102.3
Q ss_pred HHHHHHhcC-CcHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 021583 58 LVTCIKGLS-NVKEEVYGALDSFIAWELEFPL--ITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALA 134 (310)
Q Consensus 58 ~~~~l~~~~-~~~~~~~~~~~~m~~~~~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~ 134 (310)
+..+...+. +..+.|...|+++...--.... ...-.+..+|.+.++++.|...|+...+.--.....-|.-.+.|.+
T Consensus 36 Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 36 YATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 344444433 5566668888888764322211 1223566788999999999999999885532222345555555554
Q ss_pred h--c---------------CC---HHHHHHHHHHHHhcCCCCChH-HH-----------------HHHHHHHHHHcCCHH
Q 021583 135 E--D---------------GR---LDEAEELWTKIFLDHLEGTPR-IF-----------------FDKMISIYYNRGMHE 176 (310)
Q Consensus 135 ~--~---------------g~---~~~A~~~~~~m~~~~~~~~~~-~~-----------------y~~li~~~~~~g~~~ 176 (310)
. . .+ ..+|.+.|+++.+.- |++ .. --.+..-|.+.|.+.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~ 192 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYV 192 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence 2 1 12 245667777777652 111 10 112334588999999
Q ss_pred HHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 177 KMFEIFADMEEL--GVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 177 ~a~~l~~~m~~~--g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
.|..-++.+.+. +.+......-.++.+|...|..++|..+...
T Consensus 193 AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 193 AVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 999999999875 3444457778899999999999999887654
No 152
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.60 E-value=0.21 Score=38.78 Aligned_cols=66 Identities=21% Similarity=0.280 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCC
Q 021583 89 ITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFL-----DHLE 155 (310)
Q Consensus 89 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~-----~~~~ 155 (310)
.+...++..+...|+++.|.++.+...... +.|...|..+|.+|...|+..+|.+.|+++.+ .|+.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~ 133 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIE 133 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcC
Confidence 466777888888999999999999988663 56788999999999999999999999988763 4774
No 153
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.57 E-value=0.54 Score=43.38 Aligned_cols=105 Identities=10% Similarity=0.075 Sum_probs=72.6
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHH
Q 021583 82 WELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIF 161 (310)
Q Consensus 82 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 161 (310)
.|.-|-.-.|...|..=.+.+++|++..+|+...+.+ +-|.++|...-..=..-|+.+.|..+|.-..+......|...
T Consensus 431 IG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpell 509 (677)
T KOG1915|consen 431 IGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELL 509 (677)
T ss_pred hccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHH
Confidence 3556666666666666666777777777777777663 345677776666666677777777777766655443355567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 021583 162 FDKMISIYYNRGMHEKMFEIFADMEE 187 (310)
Q Consensus 162 y~~li~~~~~~g~~~~a~~l~~~m~~ 187 (310)
|-+.|..=...|.+++|..+++.+.+
T Consensus 510 wkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 510 WKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 77777777777788888888777765
No 154
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.55 E-value=0.17 Score=43.77 Aligned_cols=92 Identities=18% Similarity=0.256 Sum_probs=53.7
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHH
Q 021583 133 LAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPN-VSIVSMMGNAFQKLGMLD 211 (310)
Q Consensus 133 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~ 211 (310)
..+.+++++|+..|.+.++.. |.+.+-|..=-.+|++.|.++.|++=.+.-.. +-|. ..+|..|-.+|...|++.
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHH
Confidence 345566666666666666542 34445566666666666666666665554433 3343 356666666666666666
Q ss_pred HHHHHHHh---CCCCccchh
Q 021583 212 KYEKLKKK---YPPPKWEYR 228 (310)
Q Consensus 212 ~a~~l~~~---~~p~~~~~~ 228 (310)
+|.+.|++ +.|+..+|.
T Consensus 167 ~A~~aykKaLeldP~Ne~~K 186 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYK 186 (304)
T ss_pred HHHHHHHhhhccCCCcHHHH
Confidence 66666654 345444444
No 155
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.53 E-value=0.037 Score=37.84 Aligned_cols=64 Identities=14% Similarity=0.084 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSK----GQ-GRT-MGTYFLLLNALAEDGRLDEAEELWTKIFL 151 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~p~-~~ty~~ll~~~~~~g~~~~A~~~~~~m~~ 151 (310)
..+|+.+-..|.+.|++++|++.|++..+. |- .|+ ..++..+-..|...|+.++|++.+++-.+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 357899999999999999999999987633 21 132 67888899999999999999999987654
No 156
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.43 E-value=0.12 Score=34.20 Aligned_cols=65 Identities=15% Similarity=0.064 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhc
Q 021583 87 PLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDG-RLDEAEELWTKIFLD 152 (310)
Q Consensus 87 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g-~~~~A~~~~~~m~~~ 152 (310)
+...|..+-..+.+.|++++|...|....+.. +-+...|..+-.+|.+.| ++++|++.|++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 35678888999999999999999999988763 346788899999999999 799999999987653
No 157
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.41 E-value=0.59 Score=41.13 Aligned_cols=132 Identities=15% Similarity=0.118 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--c----CCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCC-
Q 021583 69 KEEVYGALDSFIAWELEFPLITVKKALKTLEN--E----KDWKRIIQVTKWMLSKGQ---GRTMGTYFLLLNALAEDGR- 138 (310)
Q Consensus 69 ~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~--~----~~~~~a~~~~~~m~~~g~---~p~~~ty~~ll~~~~~~g~- 138 (310)
.+.+..+.+.|.+.|.+-+..+|-+....... . ....++.++|+.|++... .++-+.+.+||.. ...+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44467778888999998888777664444433 2 235679999999996643 3566788888766 3333
Q ss_pred ---HHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 021583 139 ---LDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGM---HEKMFEIFADMEELGVRPNVSIVSMMGN 202 (310)
Q Consensus 139 ---~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~---~~~a~~l~~~m~~~g~~p~~~ty~~li~ 202 (310)
.+.++.+|+.+.+.|+..-+..-+-+-|-+++.... ..++.++++.+.+.|+++....|..+--
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 367899999999989865555555555555554333 4578889999999999998877776543
No 158
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.40 E-value=1.8 Score=40.08 Aligned_cols=141 Identities=9% Similarity=-0.002 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 021583 71 EVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIF 150 (310)
Q Consensus 71 ~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~ 150 (310)
.|-++|+...... .-++..|-..+..=.+++++..|..+|+.....=-..| ..|--.+.+=-.-|++..|.++|++-.
T Consensus 91 RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~gaRqiferW~ 168 (677)
T KOG1915|consen 91 RARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAGARQIFERWM 168 (677)
T ss_pred HHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 4566666655544 33455566666666677777777777776543311112 122222333334466777777777666
Q ss_pred hcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 021583 151 LDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKK 218 (310)
Q Consensus 151 ~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~ 218 (310)
+- .|+.-.|++.|+.=.+...++.|..+++...-.. |+..+|.-..+-=.+.|.+..|..+|+
T Consensus 169 ~w---~P~eqaW~sfI~fElRykeieraR~IYerfV~~H--P~v~~wikyarFE~k~g~~~~aR~Vye 231 (677)
T KOG1915|consen 169 EW---EPDEQAWLSFIKFELRYKEIERARSIYERFVLVH--PKVSNWIKYARFEEKHGNVALARSVYE 231 (677)
T ss_pred cC---CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec--ccHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 54 2555577777777777777777777777765432 666666665555555666665555553
No 159
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.40 E-value=0.17 Score=44.23 Aligned_cols=200 Identities=18% Similarity=0.172 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCChH
Q 021583 89 ITVKKALKTLENEKDWKRIIQVTKWMLS----KGQGRT-MGTYFLLLNALAEDGRLDEAEELWTKIFLD----HLEGTPR 159 (310)
Q Consensus 89 ~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~-~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~ 159 (310)
..|...-+.|-..|++++|.+.|..... .+-... ...|......|-+. ++++|.+.+++..+. |- ++.
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~--~~~ 112 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGR--FSQ 112 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT---HHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCc--HHH
Confidence 4577777777778888887777776432 222111 23444444555444 888888887765543 32 222
Q ss_pred --HHHHHHHHHHHHc-CCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchhee
Q 021583 160 --IFFDKMISIYYNR-GMHEKMFEIFADMEE----LGVRPN--VSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYI 230 (310)
Q Consensus 160 --~~y~~li~~~~~~-g~~~~a~~l~~~m~~----~g~~p~--~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~ 230 (310)
..+..+-..|-.. |++++|.+.|..-.+ .| .+. ..++.-+...+.+.|++++|.++|+++... .+
T Consensus 113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~-----~l 186 (282)
T PF14938_consen 113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKK-----CL 186 (282)
T ss_dssp HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-----CC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----hh
Confidence 2677777777777 899999999888653 34 222 366778888899999999999999873111 01
Q ss_pred ccCcc--cCChhhhhHhhhc-cCCChhhHHhhhchhhcC--CCC--Cchhhhhhhhhhhhh----hhHHHHHHhhhcc
Q 021583 231 KGKRV--RIPAKPKYELDSA-TEGKTNEVETTKNPNESS--EEP--EAAANLNESLEETEA----NTKELLEEADAIS 297 (310)
Q Consensus 231 ~~~~~--~~~~~~~~~li~~-~~g~~~~a~~~~~~m~~~--~~~--p~~~~~~~ll~~~~~----~~~~l~~~a~~~~ 297 (310)
..... ....+...+++=. ..|+...|.+.++..... +.. ........|++...+ .....+.+.|.++
T Consensus 187 ~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 187 ENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp CHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred cccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 11111 1122233333333 789999999999887543 222 234556666655554 4445555555554
No 160
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.31 E-value=0.97 Score=34.69 Aligned_cols=110 Identities=11% Similarity=0.043 Sum_probs=56.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Q 021583 92 KKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYN 171 (310)
Q Consensus 92 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~ 171 (310)
..++..+.+.+.+.....+++.+...+ ..+...++.++..|++.. .++.++.++. .. +......++.-|.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~-----~~yd~~~~~~~c~~ 81 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KS-----NHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--cc-----ccCCHHHHHHHHHH
Confidence 345555656666666666666666555 255566666677766543 3333344432 11 11223345555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHh
Q 021583 172 RGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKL-GMLDKYEKLKKK 219 (310)
Q Consensus 172 ~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~-g~~~~a~~l~~~ 219 (310)
.+.++++.-++..+.. |.-.+..+... ++.+.|.+.+++
T Consensus 82 ~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 82 AKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred cCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh
Confidence 6666666666655432 22223333333 556666665544
No 161
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=94.97 E-value=1.4 Score=34.69 Aligned_cols=95 Identities=8% Similarity=-0.008 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 021583 90 TVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIY 169 (310)
Q Consensus 90 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~ 169 (310)
..=.+-..+...|++++|..+|+-..... .-+..-|-.|--.+-..|++++|...|........ .+...+-.+-.+|
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~--ddp~~~~~ag~c~ 113 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI--DAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CCchHHHHHHHHH
Confidence 33455666788999999999999987663 22344445566666677999999999999988875 3445677788889
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 021583 170 YNRGMHEKMFEIFADMEE 187 (310)
Q Consensus 170 ~~~g~~~~a~~l~~~m~~ 187 (310)
...|+.+.|.+-|+....
T Consensus 114 L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 114 LACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999999997664
No 162
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.80 E-value=0.48 Score=41.08 Aligned_cols=80 Identities=15% Similarity=0.268 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 021583 123 MGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEE-----LGVRPNVSIV 197 (310)
Q Consensus 123 ~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~-----~g~~p~~~ty 197 (310)
..++..++..+..+|+.+.+.+.++++.... |.+...|-.+|.+|.+.|+...|+..|+.+.+ .|+.|...+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d--p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD--PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 3566788999999999999999999999886 46778999999999999999999999998865 5899998888
Q ss_pred HHHHHHH
Q 021583 198 SMMGNAF 204 (310)
Q Consensus 198 ~~li~~~ 204 (310)
.......
T Consensus 231 ~~y~~~~ 237 (280)
T COG3629 231 ALYEEIL 237 (280)
T ss_pred HHHHHHh
Confidence 7777763
No 163
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=94.78 E-value=0.43 Score=46.31 Aligned_cols=106 Identities=23% Similarity=0.399 Sum_probs=69.1
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHH
Q 021583 99 ENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKM 178 (310)
Q Consensus 99 ~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a 178 (310)
...+.|.+|..+++.+.... .-..-|.-+.+.|+..|+++.|+++|.+- + .++--|..|.+.|+|+.|
T Consensus 743 i~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---~-------~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---D-------LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---c-------hhHHHHHHHhccccHHHH
Confidence 34555666666666655442 22344666777888888888888887542 2 256667778888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 021583 179 FEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKK 218 (310)
Q Consensus 179 ~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~ 218 (310)
.++-.+. .|-+.....|.+-..-+-+.|++.+|++++-
T Consensus 811 ~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyi 848 (1636)
T KOG3616|consen 811 FKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYI 848 (1636)
T ss_pred HHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence 8876553 3333345666666666777777777777753
No 164
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.78 E-value=3.1 Score=39.24 Aligned_cols=151 Identities=13% Similarity=0.084 Sum_probs=101.8
Q ss_pred CcHHHHHHHHHHHHH-cCCCCCH-----HHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHh
Q 021583 67 NVKEEVYGALDSFIA-WELEFPL-----ITVKKALKTLEN----EKDWKRIIQVTKWMLSKGQGRTMGTYFLL-LNALAE 135 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~-~~~~p~~-----~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~ty~~l-l~~~~~ 135 (310)
+..+...+.+.+-.+ .|+.-.. ..|+..+..++- ....+.|.++++.+.+. -|+..-|... -+.+..
T Consensus 202 gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~ 279 (468)
T PF10300_consen 202 GDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERL 279 (468)
T ss_pred CcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHH
Confidence 445555555555433 3443322 245555555544 45778899999999876 5887777665 455667
Q ss_pred cCCHHHHHHHHHHHHhc--CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCH--
Q 021583 136 DGRLDEAEELWTKIFLD--HLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAF-QKLGML-- 210 (310)
Q Consensus 136 ~g~~~~A~~~~~~m~~~--~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~-~~~g~~-- 210 (310)
.|++++|.+.|++.... ..+......|--+.-.+.-.+++++|.+.|..+.+.. .++..+|.-+.-+| ...|+.
T Consensus 280 ~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~ 358 (468)
T PF10300_consen 280 KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEE 358 (468)
T ss_pred hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchh
Confidence 89999999999976642 2222333456667777888999999999999999743 34556666555553 456777
Q ss_pred -----HHHHHHHHhC
Q 021583 211 -----DKYEKLKKKY 220 (310)
Q Consensus 211 -----~~a~~l~~~~ 220 (310)
++|..+|+++
T Consensus 359 ~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 359 AKEHKKEAEELFRKV 373 (468)
T ss_pred hhhhHHHHHHHHHHH
Confidence 8888998764
No 165
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.74 E-value=0.8 Score=42.22 Aligned_cols=66 Identities=11% Similarity=-0.062 Sum_probs=57.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 021583 85 EFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTM----GTYFLLLNALAEDGRLDEAEELWTKIFLD 152 (310)
Q Consensus 85 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~ty~~ll~~~~~~g~~~~A~~~~~~m~~~ 152 (310)
+.+...++.+-.+|.+.|++++|...|+.-.+. .|+. .+|..+-.+|.+.|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345788999999999999999999999997765 4653 46999999999999999999999998875
No 166
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.70 E-value=1.1 Score=38.23 Aligned_cols=132 Identities=10% Similarity=0.020 Sum_probs=95.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHH--
Q 021583 90 TVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMIS-- 167 (310)
Q Consensus 90 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~-- 167 (310)
.-+.+++.+.-.|.+.-..+++++.++..-+.+....+.|...-.+.||.+.|...|++..+..-+ .+..+++.++.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~k-L~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQK-LDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhh-hhccchhHHHHhh
Confidence 345666777777888889999999998877778888899999999999999999999988766542 55556666554
Q ss_pred ---HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 021583 168 ---IYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPP 223 (310)
Q Consensus 168 ---~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~ 223 (310)
.|.-.+++.+|...+.+..... .-|+..-|.=.-++.-.|+...|.+.++.+.|.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445667777877777765432 113344444444445568899999998876543
No 167
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.68 E-value=2.8 Score=42.54 Aligned_cols=85 Identities=18% Similarity=0.195 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 021583 124 GTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNA 203 (310)
Q Consensus 124 ~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 203 (310)
..|+.+-++-.+.|.+.+|.+-|-+ ..+...|--+|....+.|.+++..+.+...+++.-+|... +.||.+
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyik-------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIK-------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHh-------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence 4555555665566665555544422 1222456666666666666666666665555555555443 345556
Q ss_pred HHhcCCHHHHHHHH
Q 021583 204 FQKLGMLDKYEKLK 217 (310)
Q Consensus 204 ~~~~g~~~~a~~l~ 217 (310)
|++.+++.+.+.+.
T Consensus 1176 yAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI 1189 (1666)
T ss_pred HHHhchHHHHHHHh
Confidence 66666555554444
No 168
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=94.67 E-value=0.83 Score=45.20 Aligned_cols=105 Identities=16% Similarity=0.226 Sum_probs=52.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHH
Q 021583 100 NEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNAL--AEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEK 177 (310)
Q Consensus 100 ~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~--~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~ 177 (310)
..+++..|........+. .|+ ..|...++++ .+.|+.++|..+++.....+. .+..|-.++-..|...++.++
T Consensus 21 d~~qfkkal~~~~kllkk--~Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~--~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK--HPN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKG--TDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhHHHHHHHHHHHHHHHH--CCC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCC--CchHHHHHHHHHHHHHhhhhH
Confidence 344555555555554433 133 2233333333 244556666655555554443 344556666666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 021583 178 MFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLD 211 (310)
Q Consensus 178 a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 211 (310)
|..+|+...+ .-|+..-...+..+|.+.+.+.
T Consensus 96 ~~~~Ye~~~~--~~P~eell~~lFmayvR~~~yk 127 (932)
T KOG2053|consen 96 AVHLYERANQ--KYPSEELLYHLFMAYVREKSYK 127 (932)
T ss_pred HHHHHHHHHh--hCCcHHHHHHHHHHHHHHHHHH
Confidence 6666655433 2355544455555555554443
No 169
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.66 E-value=0.19 Score=33.61 Aligned_cols=55 Identities=13% Similarity=0.093 Sum_probs=30.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 021583 131 NALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEE 187 (310)
Q Consensus 131 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~ 187 (310)
..|.+.+++++|.++++++.+.+- .+...|...-..|.+.|++++|.+.++...+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDP--DDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCc--ccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 345555666666666666555532 2333555555555566666666666665554
No 170
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=94.63 E-value=1.1 Score=38.76 Aligned_cols=98 Identities=14% Similarity=0.103 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-C-CCCHHHHHH
Q 021583 123 MGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGT-PRIFFDKMISIYYNRGMHEKMFEIFADMEELG-V-RPNVSIVSM 199 (310)
Q Consensus 123 ~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g-~-~p~~~ty~~ 199 (310)
...|...+..+.+.|++++|...|+.+.+..-... ....+-.+-..|...|++++|...|..+...- - ......+-.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 46677777777788999999999999998742111 01367788889999999999999999998642 1 112344455
Q ss_pred HHHHHHhcCCHHHHHHHHHhC
Q 021583 200 MGNAFQKLGMLDKYEKLKKKY 220 (310)
Q Consensus 200 li~~~~~~g~~~~a~~l~~~~ 220 (310)
+..++...|+.++|...|+++
T Consensus 223 lg~~~~~~g~~~~A~~~~~~v 243 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQV 243 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 567788999999999998763
No 171
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.62 E-value=0.28 Score=32.82 Aligned_cols=59 Identities=15% Similarity=0.129 Sum_probs=49.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 021583 95 LKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHL 154 (310)
Q Consensus 95 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~ 154 (310)
-..|.+.++++.|.++++.+...+ +.+...+...-..+.+.|++++|.+.|++..+.+-
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 356889999999999999998773 44677788888899999999999999999987753
No 172
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.36 E-value=1.1 Score=39.82 Aligned_cols=122 Identities=13% Similarity=0.099 Sum_probs=72.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHH-HHHHH
Q 021583 92 KKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKM-ISIYY 170 (310)
Q Consensus 92 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~l-i~~~~ 170 (310)
.++..++.-..++++++-.++.++..-.--|.+-|| +.++++..|...+|+++|-+.....+ .+..+|-.+ ..+|.
T Consensus 363 QsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~i--kn~~~Y~s~LArCyi 439 (557)
T KOG3785|consen 363 QSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEI--KNKILYKSMLARCYI 439 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhh--hhhHHHHHHHHHHHH
Confidence 344445555556777777777766554444444443 56777777778888888777665555 455555544 45667
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHh
Q 021583 171 NRGMHEKMFEIFADMEELGVRPNVSI-VSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 171 ~~g~~~~a~~l~~~m~~~g~~p~~~t-y~~li~~~~~~g~~~~a~~l~~~ 219 (310)
++++.+-|+.++-.+.. .-+..+ ...+.+-|-+++.+--|-+.|+.
T Consensus 440 ~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~ 486 (557)
T KOG3785|consen 440 RNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDE 486 (557)
T ss_pred hcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 77777777766555442 122322 23344456667776666666554
No 173
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.34 E-value=3.4 Score=42.23 Aligned_cols=154 Identities=13% Similarity=0.070 Sum_probs=99.6
Q ss_pred CCcHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhc
Q 021583 66 SNVKEEVYGALDSFIAWELEFP----LITVKKALKTLENEKDWKRIIQVTKWMLSK----GQ-GRTMGTYFLLLNALAED 136 (310)
Q Consensus 66 ~~~~~~~~~~~~~m~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~ty~~ll~~~~~~ 136 (310)
.+..+.+...+++..+.--..+ ....+.+-..+...|++++|...+++.... |- ..-..++..+-..+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 3445555666666544211111 234566666778899999999999887632 11 11134556667788899
Q ss_pred CCHHHHHHHHHHHHhc----CCCC-C-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCC--CHHHHHHHHHHHHh
Q 021583 137 GRLDEAEELWTKIFLD----HLEG-T-PRIFFDKMISIYYNRGMHEKMFEIFADMEEL--GVRP--NVSIVSMMGNAFQK 206 (310)
Q Consensus 137 g~~~~A~~~~~~m~~~----~~~~-~-~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~--g~~p--~~~ty~~li~~~~~ 206 (310)
|++++|...+++..+. +... + ....+..+-..+...|++++|...+.+.... ...+ ....+..+...+..
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 9999999998876553 2210 1 1234555666677889999999998887542 1112 23455556677888
Q ss_pred cCCHHHHHHHHHh
Q 021583 207 LGMLDKYEKLKKK 219 (310)
Q Consensus 207 ~g~~~~a~~l~~~ 219 (310)
.|+.++|.+.+++
T Consensus 625 ~G~~~~A~~~l~~ 637 (903)
T PRK04841 625 RGDLDNARRYLNR 637 (903)
T ss_pred cCCHHHHHHHHHH
Confidence 9999999888765
No 174
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=94.26 E-value=0.48 Score=45.77 Aligned_cols=144 Identities=9% Similarity=0.043 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC----------------------CCCH
Q 021583 71 EVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSK-----GQ----------------------GRTM 123 (310)
Q Consensus 71 ~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~----------------------~p~~ 123 (310)
+|..+..+..+ -+||..-|..+.......--+++|.++++....+ |. ..-.
T Consensus 442 kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~ 519 (777)
T KOG1128|consen 442 KAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQL 519 (777)
T ss_pred hHHHHHHHHhc--CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccch
Confidence 34444443333 4677888877777776666677777777764322 10 0012
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 021583 124 GTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNA 203 (310)
Q Consensus 124 ~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 203 (310)
.+|=.+--+..+.++++.|.+.|..-..- .|.+...||++-.+|.+.|+..+|...+.+-.+.+.. +...|-..+-.
T Consensus 520 ~~wf~~G~~ALqlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlv 596 (777)
T KOG1128|consen 520 GTWFGLGCAALQLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLV 596 (777)
T ss_pred hHHHhccHHHHHHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhh
Confidence 22333333445778889999999887754 3355569999999999999999999999998887733 45667777778
Q ss_pred HHhcCCHHHHHHHHHh
Q 021583 204 FQKLGMLDKYEKLKKK 219 (310)
Q Consensus 204 ~~~~g~~~~a~~l~~~ 219 (310)
..+-|.+++|.+.+.+
T Consensus 597 svdvge~eda~~A~~r 612 (777)
T KOG1128|consen 597 SVDVGEFEDAIKAYHR 612 (777)
T ss_pred hhhcccHHHHHHHHHH
Confidence 8899999999999876
No 175
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.26 E-value=0.91 Score=41.89 Aligned_cols=66 Identities=14% Similarity=0.035 Sum_probs=57.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 021583 121 RTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPR---IFFDKMISIYYNRGMHEKMFEIFADMEEL 188 (310)
Q Consensus 121 p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---~~y~~li~~~~~~g~~~~a~~l~~~m~~~ 188 (310)
.+...++.+-.+|.+.|++++|+..|++-.+.+- .+. .+|..+-.+|.+.|+.++|.+.+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~P--d~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNP--NPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3578999999999999999999999999887753 222 46999999999999999999999998874
No 176
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=94.25 E-value=1.2 Score=45.00 Aligned_cols=127 Identities=10% Similarity=0.079 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMIS 167 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~ 167 (310)
..++-.+..+|-+.|+.++|..+|+++.+.. .-|..+.|.+-..|... ++++|++++.+..++.+. .--|+.+..
T Consensus 116 k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~---~kq~~~~~e 190 (906)
T PRK14720 116 KLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIK---KKQYVGIEE 190 (906)
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHh---hhcchHHHH
Confidence 3577788889999999999999999999886 66788999999999998 999999999888776441 112222222
Q ss_pred ---HHH--HcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 168 ---IYY--NRGMHEKMFEIFADMEEL-GVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 168 ---~~~--~~g~~~~a~~l~~~m~~~-g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
.+| ...+++.-.++.+.+... |..--..++-.+-..|....+++++.++++.
T Consensus 191 ~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~ 248 (906)
T PRK14720 191 IWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKK 248 (906)
T ss_pred HHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 222 233455556666666544 5444556777777888888888888888875
No 177
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.23 E-value=0.67 Score=40.77 Aligned_cols=166 Identities=14% Similarity=0.153 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCC----HHHHHHHHHHHHhcCC--CCChHHHHHHHHHHHHHcCC-
Q 021583 104 WKRIIQVTKWMLSKGQGRTMGTYFLLLNALAE--DGR----LDEAEELWTKIFLDHL--EGTPRIFFDKMISIYYNRGM- 174 (310)
Q Consensus 104 ~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~--~g~----~~~A~~~~~~m~~~~~--~~~~~~~y~~li~~~~~~g~- 174 (310)
+++..++++.|.+.|++-+.++|-+..-.+.. ..+ ...|.++|+.|++.+- .....+++..|+.. ...+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 56678899999999999999888774333333 333 5689999999999853 22344678888776 3333
Q ss_pred ---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCcccCChhhhhHh-----
Q 021583 175 ---HEKMFEIFADMEELGVRPN-VSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYEL----- 245 (310)
Q Consensus 175 ---~~~a~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~l----- 245 (310)
.+.++..|+.+...|...+ ..-+.+-+-++.....-+++.++.+- ++.+++.++++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l-------~~~l~~~~~kik~~~yp~lGlLal 228 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIEL-------YNALKKNGVKIKYMHYPTLGLLAL 228 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHH-------HHHHHHcCCccccccccHHHHHHh
Confidence 4667888999999888764 43444444444443333333333222 5566666777666666532
Q ss_pred hhccC-CChhhHHhhhchhhc-CCCCCchhhhhhhh
Q 021583 246 DSATE-GKTNEVETTKNPNES-SEEPEAAANLNESL 279 (310)
Q Consensus 246 i~~~~-g~~~~a~~~~~~m~~-~~~~p~~~~~~~ll 279 (310)
+.... ...+...++.+.+.. ++.. -.+.++.++
T Consensus 229 l~~~~~~~~~~i~ev~~~L~~~k~~~-~~k~~~~li 263 (297)
T PF13170_consen 229 LEDPEEKIVEEIKEVIDELKEQKGFG-WDKDFRFLI 263 (297)
T ss_pred cCCchHHHHHHHHHHHHHHhhCcccC-hhHHHHHHH
Confidence 22211 334445555544432 2222 344555555
No 178
>PLN02789 farnesyltranstransferase
Probab=94.19 E-value=3.9 Score=36.46 Aligned_cols=145 Identities=11% Similarity=-0.013 Sum_probs=99.5
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 021583 58 LVTCIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEK-DWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAED 136 (310)
Q Consensus 58 ~~~~l~~~~~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~ 136 (310)
+..++....+..++|.....+..+.+ +-+..+|+.--..+.+.| +++++++.++.+.+..- -+..+|+..-..+.+.
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l 119 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHc
Confidence 33344444445566677777777655 223456666656666666 68999999999887642 3344566554445555
Q ss_pred CC--HHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 021583 137 GR--LDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKL 207 (310)
Q Consensus 137 g~--~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 207 (310)
|+ .++++++++++.+..- .+..+|+-.-..+.+.|+++++++.++.+.+.... |...|+.....+.+.
T Consensus 120 ~~~~~~~el~~~~kal~~dp--kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 120 GPDAANKELEFTRKILSLDA--KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRS 189 (320)
T ss_pred CchhhHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhc
Confidence 55 3678999999997764 56678999999999999999999999999987654 455666655555444
No 179
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=93.86 E-value=2.7 Score=40.31 Aligned_cols=129 Identities=12% Similarity=0.072 Sum_probs=94.3
Q ss_pred CCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHH
Q 021583 85 EFPLIT--VKKALKTLENEKDWKRIIQVTKWMLSKGQGRTM-GTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIF 161 (310)
Q Consensus 85 ~p~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 161 (310)
+|+... +--++..|-+.|+++.|...++....+ .|+. .-|.+=-+.+..+|++++|..++++..+... +|...
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~--aDR~I 441 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT--ADRAI 441 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc--hhHHH
Confidence 455443 445678888999999999999876654 6775 5566667889999999999999999998765 45443
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH----------HHHHhcCCHHHHHHHHHh
Q 021583 162 FDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMG----------NAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 162 y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li----------~~~~~~g~~~~a~~l~~~ 219 (310)
=.--..-..+++++++|.++.....+.|. +..-+-+-+ .+|.+.|++..|++-|..
T Consensus 442 NsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~ 507 (700)
T KOG1156|consen 442 NSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHE 507 (700)
T ss_pred HHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhh
Confidence 33566667789999999999998887775 333322222 346778888888777654
No 180
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.85 E-value=1.6 Score=37.39 Aligned_cols=127 Identities=11% Similarity=-0.040 Sum_probs=91.3
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHH
Q 021583 73 YGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLN-----ALAEDGRLDEAEELWT 147 (310)
Q Consensus 73 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~-----~~~~~g~~~~A~~~~~ 147 (310)
..++.+.++.+-+-+..-...|.+.-.+.|+.+.|...|+..++..-+.|..+++.++. .|.-+.+...|...|+
T Consensus 197 ~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~ 276 (366)
T KOG2796|consen 197 VDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFT 276 (366)
T ss_pred HHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHh
Confidence 45566666666566777888888888999999999999999887766677666666654 4556678889999999
Q ss_pred HHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 021583 148 KIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNA 203 (310)
Q Consensus 148 ~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 203 (310)
+..++.- .+.+.-|+=.-...-.|+...|.+..+.|.+. .|...+-++++-.
T Consensus 277 ~i~~~D~--~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~~n 328 (366)
T KOG2796|consen 277 EILRMDP--RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVLFN 328 (366)
T ss_pred hccccCC--CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHHHH
Confidence 9988764 33333444333344478999999999999874 5666555544433
No 181
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.85 E-value=1.7 Score=37.77 Aligned_cols=98 Identities=13% Similarity=0.115 Sum_probs=79.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHH
Q 021583 97 TLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHE 176 (310)
Q Consensus 97 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~ 176 (310)
-+.+.+++.+|++.|...++. ..-|.+-|+.=-.+|.+-|..+.|++=.+.-.... +.-..+|..|=.+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD--p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID--PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHccCcHH
Confidence 346788999999999998876 24567888888999999999999998887766543 233459999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHH
Q 021583 177 KMFEIFADMEELGVRPNVSIVSM 199 (310)
Q Consensus 177 ~a~~l~~~m~~~g~~p~~~ty~~ 199 (310)
+|++.|..-.+ +.|+-.+|..
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHH
Confidence 99999888665 7888777765
No 182
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=93.84 E-value=6.7 Score=37.90 Aligned_cols=55 Identities=15% Similarity=-0.019 Sum_probs=32.4
Q ss_pred hhhhHhhhc-----cCCChhhHHhhhchhhcCCCCCchhhhhhhh-hhhhhhhHHHHHHhhhc
Q 021583 240 KPKYELDSA-----TEGKTNEVETTKNPNESSEEPEAAANLNESL-EETEANTKELLEEADAI 296 (310)
Q Consensus 240 ~~~~~li~~-----~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll-~~~~~~~~~l~~~a~~~ 296 (310)
..|++.+.- .....+.|.++|+.-+. +.||....+=.|+ ..-+... .|.++|..+
T Consensus 548 diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~-GLar~amsi 608 (835)
T KOG2047|consen 548 DIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEH-GLARHAMSI 608 (835)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 455554443 67778999999998877 7777544443343 3333322 455554443
No 183
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.64 E-value=1.7 Score=35.15 Aligned_cols=101 Identities=11% Similarity=-0.074 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHH
Q 021583 123 MGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRI--FFDKMISIYYNRGMHEKMFEIFADMEEL---GVRPNVSIV 197 (310)
Q Consensus 123 ~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~--~y~~li~~~~~~g~~~~a~~l~~~m~~~---g~~p~~~ty 197 (310)
...+..+.+.|++.|+.++|.+.|.++.+.... +... .+-.+|....-.+++..+...+...... |-.++...-
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~-~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTS-PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 356677788888888888888888888776552 2222 5677777777888888888777766543 222222221
Q ss_pred HHHHHH--HHhcCCHHHHHHHHHhCCCCc
Q 021583 198 SMMGNA--FQKLGMLDKYEKLKKKYPPPK 224 (310)
Q Consensus 198 ~~li~~--~~~~g~~~~a~~l~~~~~p~~ 224 (310)
-....+ +...+++.+|-++|-...++.
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 112222 345789999999987765554
No 184
>PLN02789 farnesyltranstransferase
Probab=93.59 E-value=5.1 Score=35.72 Aligned_cols=125 Identities=11% Similarity=0.052 Sum_probs=88.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 021583 91 VKKALKTLENEKDWKRIIQVTKWMLSKGQGRTM-GTYFLLLNALAEDG-RLDEAEELWTKIFLDHLEGTPRIFFDKMISI 168 (310)
Q Consensus 91 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~ty~~ll~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~ 168 (310)
+..+-..+...++.++|+.+.++..+. .|+- .+|+.--..+.+.| ++++++.+++++.+.+- .+-.+|+.--..
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np--knyqaW~~R~~~ 115 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP--KNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC--cchHHhHHHHHH
Confidence 334444455667888999999988865 2433 34554444555556 68999999999998764 343467755545
Q ss_pred HHHcCCH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 021583 169 YYNRGMH--EKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKY 220 (310)
Q Consensus 169 ~~~~g~~--~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~ 220 (310)
+-+.|+. +++..+++.+.+..-+ +.+.|+...-++...|+++++++.++++
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~ 168 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQL 168 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 5556653 6788888888865422 6788998888899999999999998763
No 185
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=93.57 E-value=5.2 Score=38.24 Aligned_cols=121 Identities=11% Similarity=0.052 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCH
Q 021583 70 EEVYGALDSFIAWELEFP-LITVKKALKTLENEK--------DWKRIIQVTKWMLSK-GQGRTMGTYFLLLNALAEDGRL 139 (310)
Q Consensus 70 ~~~~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~--------~~~~a~~~~~~m~~~-g~~p~~~ty~~ll~~~~~~g~~ 139 (310)
+++..+|++..+.. |+ ...|..+..+|.... +...+.+........ ....+...|.++--.....|++
T Consensus 359 ~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~ 436 (517)
T PRK10153 359 NKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKT 436 (517)
T ss_pred HHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCH
Confidence 34567777766654 44 344444433332221 223344444433332 2344567788776666678999
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 021583 140 DEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIV 197 (310)
Q Consensus 140 ~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty 197 (310)
++|...+++..+.+ ++...|..+-..|...|+.++|.+.+++-.. ..|...||
T Consensus 437 ~~A~~~l~rAl~L~---ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt~ 489 (517)
T PRK10153 437 DEAYQAINKAIDLE---MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENTL 489 (517)
T ss_pred HHHHHHHHHHHHcC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCchH
Confidence 99999999999876 3456899999999999999999999988665 34554443
No 186
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=93.44 E-value=1.9 Score=42.70 Aligned_cols=87 Identities=18% Similarity=0.130 Sum_probs=45.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH----------HHC---------
Q 021583 128 LLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADM----------EEL--------- 188 (310)
Q Consensus 128 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m----------~~~--------- 188 (310)
.|=+.|-..|.|++|.++-+.=-+.+++ .||.....-+-..++.+.|++.|+.- ...
T Consensus 831 LlNKlyQs~g~w~eA~eiAE~~DRiHLr----~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv 906 (1416)
T KOG3617|consen 831 LLNKLYQSQGMWSEAFEIAETKDRIHLR----NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYV 906 (1416)
T ss_pred HHHHHHHhcccHHHHHHHHhhccceehh----hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHH
Confidence 3344455556666666665544443332 35555555555566666666655431 111
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 021583 189 GVRPNVSIVSMMGNAFQKLGMLDKYEKLKK 218 (310)
Q Consensus 189 g~~p~~~ty~~li~~~~~~g~~~~a~~l~~ 218 (310)
.-+-|...|.-+-..+-..|++|.|+.+|.
T Consensus 907 ~~~~d~~L~~WWgqYlES~GemdaAl~~Y~ 936 (1416)
T KOG3617|consen 907 RRKRDESLYSWWGQYLESVGEMDAALSFYS 936 (1416)
T ss_pred HhccchHHHHHHHHHHhcccchHHHHHHHH
Confidence 122344445555555556677777776654
No 187
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.37 E-value=2.8 Score=39.59 Aligned_cols=141 Identities=9% Similarity=-0.016 Sum_probs=103.5
Q ss_pred HHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 021583 71 EVYGALDSFIA-WELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGR-TMGTYFLLLNALAEDGRLDEAEELWTK 148 (310)
Q Consensus 71 ~~~~~~~~m~~-~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~g~~~~A~~~~~~ 148 (310)
++.+.|.++.. .+..+|....+.|=-.|--.|.|++|.+-|+..... +| |-..||-|--.++...+..+|.+.|.+
T Consensus 412 ~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~r 489 (579)
T KOG1125|consen 412 HIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNR 489 (579)
T ss_pred HHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHH
Confidence 34666666554 465577777777777777889999999999997755 45 568899999999999999999999999
Q ss_pred HHhcCCCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHH---HHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 021583 149 IFLDHLEGTPR-IFFDKMISIYYNRGMHEKMFEIFADM---EELG------VRPNVSIVSMMGNAFQKLGMLDKYEKL 216 (310)
Q Consensus 149 m~~~~~~~~~~-~~y~~li~~~~~~g~~~~a~~l~~~m---~~~g------~~p~~~ty~~li~~~~~~g~~~~a~~l 216 (310)
.++.. |+- .++-.|--+|.+.|.+++|.+.|-.. .+++ ..++...|.+|=.++...++.|.+.+.
T Consensus 490 ALqLq---P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 490 ALQLQ---PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHhcC---CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 88763 222 25555666789999999998877653 3332 223446788877778888887765444
No 188
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=93.24 E-value=2.2 Score=42.27 Aligned_cols=49 Identities=16% Similarity=0.196 Sum_probs=29.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 165 MISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 165 li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
++...|-.|+.++|-++-++ .-|....-.|.+-|-..|++.+|.++|-+
T Consensus 944 ~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 944 MVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred heeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 33334444555555444443 23555556677778888888888888744
No 189
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.11 E-value=1.3 Score=43.72 Aligned_cols=129 Identities=15% Similarity=0.071 Sum_probs=70.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 021583 130 LNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGM 209 (310)
Q Consensus 130 l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~ 209 (310)
|.-|....++.+--.+++.+.+.|+ .+...-..||++|.+.++.++..++.+.-. .|.. .+-....+..|.+.+-
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gl--a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~sny 478 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGL--ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNY 478 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHccc--ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhCh
Confidence 3334444444444455555555555 233344555666666666655555554433 2211 1112344455555555
Q ss_pred HHHHHHHHHhCCCCccchheeccCcccCChhhhhHhhhccCCChhhHHhhhchhhcCCCCCchhhhhhhh
Q 021583 210 LDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSATEGKTNEVETTKNPNESSEEPEAAANLNESL 279 (310)
Q Consensus 210 ~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 279 (310)
+++|..+-.+. ....-..+.+++- .|++++|.+++..+.-+...+....|...|
T Consensus 479 l~~a~~LA~k~---------------~~he~vl~ille~-~~ny~eAl~yi~slp~~e~l~~l~kyGk~L 532 (933)
T KOG2114|consen 479 LDEAELLATKF---------------KKHEWVLDILLED-LHNYEEALRYISSLPISELLRTLNKYGKIL 532 (933)
T ss_pred HHHHHHHHHHh---------------ccCHHHHHHHHHH-hcCHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 55555543221 1123333444444 789999999999998888888888888777
No 190
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.06 E-value=4.8 Score=36.04 Aligned_cols=115 Identities=9% Similarity=-0.038 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHH
Q 021583 104 WKRIIQVTKWMLSKGQGRTMGTY-FLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIF 182 (310)
Q Consensus 104 ~~~a~~~~~~m~~~g~~p~~~ty-~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~ 182 (310)
.+-|.+.|+-.-+++..-|+..- -++...+.-.-++++++-.+...+.--. ..+...| .+..+++..|...+|+++|
T Consensus 339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~-NdD~Fn~-N~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFT-NDDDFNL-NLAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc-Ccchhhh-HHHHHHHHhcChHHHHHHH
Confidence 45566666665555554333222 2233333444557777777666655433 1222223 4778889999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 021583 183 ADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKY 220 (310)
Q Consensus 183 ~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~ 220 (310)
-....-.++-+..-...|.++|.+.+..+.|+.+|-+.
T Consensus 417 ~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 417 IRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred hhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 87765555534444456678899999999999987553
No 191
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=93.01 E-value=3.8 Score=36.46 Aligned_cols=87 Identities=16% Similarity=0.092 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 021583 124 GTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNA 203 (310)
Q Consensus 124 ~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 203 (310)
.+.+.-|.-+...|+...|.++-++. .+ ++..-|-..|.+|+..++|++.+++... +-.+.-|...+.+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F---kv--~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~ 246 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF---KV--PDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEA 246 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc---CC--cHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHH
Confidence 34455567777888888888875554 33 5556899999999999999998887543 1233668889999
Q ss_pred HHhcCCHHHHHHHHHhCC
Q 021583 204 FQKLGMLDKYEKLKKKYP 221 (310)
Q Consensus 204 ~~~~g~~~~a~~l~~~~~ 221 (310)
|.+.|..++|.+...++.
T Consensus 247 ~~~~~~~~eA~~yI~k~~ 264 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPKIP 264 (319)
T ss_pred HHHCCCHHHHHHHHHhCC
Confidence 999999999988876633
No 192
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.75 E-value=2.8 Score=36.62 Aligned_cols=181 Identities=12% Similarity=0.070 Sum_probs=111.7
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-------------CC--------HHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQG-------------RT--------MGT 125 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-------------p~--------~~t 125 (310)
+..+.|.+-|....+.+---....||..+..| +.|+++.|++...++.++|++ || .-.
T Consensus 158 gqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh 236 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLH 236 (459)
T ss_pred ccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHH
Confidence 56667778888877763333456788777665 557899999999999988762 12 122
Q ss_pred HHHHHHH-------HHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHH
Q 021583 126 YFLLLNA-------LAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRP-NVSIV 197 (310)
Q Consensus 126 y~~ll~~-------~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty 197 (310)
-+.++.+ +.+.|+.+.|.+-+-.|.-+.-...+.+|...+.-.-. .+++-+..+-+.-+.+. -| -..||
T Consensus 237 ~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~--nPfP~ETF 313 (459)
T KOG4340|consen 237 QSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQ--NPFPPETF 313 (459)
T ss_pred HHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhc--CCCChHHH
Confidence 2334444 45678889999999888866543355565555443333 33444444444444443 33 34789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhh
Q 021583 198 SMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTK 260 (310)
Q Consensus 198 ~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~ 260 (310)
..++-.||+..-++.|-.++.+- ...||.. .+.+.|+.|-.- .....+++++-+
T Consensus 314 ANlLllyCKNeyf~lAADvLAEn--~~lTyk~-------L~~Yly~LLdaLIt~qT~pEea~KKL 369 (459)
T KOG4340|consen 314 ANLLLLYCKNEYFDLAADVLAEN--AHLTYKF-------LTPYLYDLLDALITCQTAPEEAFKKL 369 (459)
T ss_pred HHHHHHHhhhHHHhHHHHHHhhC--cchhHHH-------hhHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999999999999998652 2233443 344555433222 344555555444
No 193
>PRK04841 transcriptional regulator MalT; Provisional
Probab=92.67 E-value=8.1 Score=39.52 Aligned_cols=131 Identities=8% Similarity=-0.006 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChH--
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSK----GQGRTMGTY--FLLLNALAEDGRLDEAEELWTKIFLDHLEGTPR-- 159 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~ty--~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-- 159 (310)
...+..+...+...|+++.|.+.+...... +........ ...+..+...|+.+.|.+.+......... .+.
T Consensus 612 ~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~-~~~~~ 690 (903)
T PRK04841 612 LQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFA-NNHFL 690 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCc-cchhH
Confidence 344555666778899999999999887532 111111011 11234556689999999998776543221 111
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 160 -IFFDKMISIYYNRGMHEKMFEIFADMEEL----GVRPN-VSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 160 -~~y~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p~-~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
..+..+..++...|+.++|..++++.... |..++ ..+...+-.++.+.|+.++|...+.+
T Consensus 691 ~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~ 756 (903)
T PRK04841 691 QGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLE 756 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 12456777888999999999999887642 44333 25677777888999999999998875
No 194
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=92.65 E-value=7.5 Score=37.59 Aligned_cols=146 Identities=10% Similarity=0.152 Sum_probs=91.1
Q ss_pred hHhHHHHHHhcC-CcHHHHHHHHHHHHH-cCCC------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 021583 55 SAKLVTCIKGLS-NVKEEVYGALDSFIA-WELE------------FPLITVKKALKTLENEKDWKRIIQVTKWMLSK--- 117 (310)
Q Consensus 55 ~~~~~~~l~~~~-~~~~~~~~~~~~m~~-~~~~------------p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--- 117 (310)
...|+.+|+.++ ....+++..+-...+ .+++ .++..-+--|..+++.+++++|-+.+......
T Consensus 122 R~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f 201 (835)
T KOG2047|consen 122 RRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEF 201 (835)
T ss_pred HHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhh
Confidence 456888888877 122223333333222 2222 23444566688888999999998888876533
Q ss_pred ---CCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcCCCCChHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 021583 118 ---GQGRTMGTYFLLLNALAEDGRLDE---AEELWTKIFLDHLEGTPRI--FFDKMISIYYNRGMHEKMFEIFADMEELG 189 (310)
Q Consensus 118 ---g~~p~~~ty~~ll~~~~~~g~~~~---A~~~~~~m~~~~~~~~~~~--~y~~li~~~~~~g~~~~a~~l~~~m~~~g 189 (310)
..+-+-..|.-+.+..+++.+.-. ...++..+..+ -+|.. .|++|..-|.+.|++++|..+|++-.+.-
T Consensus 202 ~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r---ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v 278 (835)
T KOG2047|consen 202 VSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR---FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV 278 (835)
T ss_pred hhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc---CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 224556677777777777766543 44555555443 24443 79999999999999999999998866542
Q ss_pred CCCCHHHHHHHHHHHH
Q 021583 190 VRPNVSIVSMMGNAFQ 205 (310)
Q Consensus 190 ~~p~~~ty~~li~~~~ 205 (310)
....-|+.+.++|+
T Consensus 279 --~tvrDFt~ifd~Ya 292 (835)
T KOG2047|consen 279 --MTVRDFTQIFDAYA 292 (835)
T ss_pred --eehhhHHHHHHHHH
Confidence 23344555555554
No 195
>PRK15331 chaperone protein SicA; Provisional
Probab=92.53 E-value=1.2 Score=35.22 Aligned_cols=81 Identities=16% Similarity=0.150 Sum_probs=36.5
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 021583 135 EDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYE 214 (310)
Q Consensus 135 ~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~ 214 (310)
..|++++|+.+|.-+.--+. -+..-|..|-.+|-..+++++|..+|...-.... -|...+-.+-.||...|+.+.|.
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~--~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDF--YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHH
Confidence 44555555555555444332 2222234444444445555555555554433221 12222333344555555555555
Q ss_pred HHHH
Q 021583 215 KLKK 218 (310)
Q Consensus 215 ~l~~ 218 (310)
+.|+
T Consensus 126 ~~f~ 129 (165)
T PRK15331 126 QCFE 129 (165)
T ss_pred HHHH
Confidence 5543
No 196
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=92.21 E-value=3.4 Score=32.09 Aligned_cols=97 Identities=11% Similarity=0.030 Sum_probs=64.2
Q ss_pred HCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CChHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHC
Q 021583 116 SKGQGRTM--GTYFLLLNALAEDGRLDEAEELWTKIFLDHLE----GTPRIFFDKMISIYYNRGM-HEKMFEIFADMEEL 188 (310)
Q Consensus 116 ~~g~~p~~--~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~----~~~~~~y~~li~~~~~~g~-~~~a~~l~~~m~~~ 188 (310)
+.+..++. ...|++++-.+..+.....+++++.+..-... ..+..+|++++.+.++..- .-.+..+|+-|++.
T Consensus 30 ~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~ 109 (145)
T PF13762_consen 30 EENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKN 109 (145)
T ss_pred hcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHc
Confidence 33444443 33455666666666666666666555322110 1233479999999977776 55678889999998
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHH
Q 021583 189 GVRPNVSIVSMMGNAFQKLGMLDK 212 (310)
Q Consensus 189 g~~p~~~ty~~li~~~~~~g~~~~ 212 (310)
+.+++..-|..||+++.+-...|.
T Consensus 110 ~~~~t~~dy~~li~~~l~g~~~~~ 133 (145)
T PF13762_consen 110 DIEFTPSDYSCLIKAALRGYFHDS 133 (145)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCcc
Confidence 889999999999998887644444
No 197
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.84 E-value=3.4 Score=31.96 Aligned_cols=87 Identities=11% Similarity=0.073 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHH
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKG--QGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKM 165 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~l 165 (310)
...|+..... .+.|++++|.+.|+.+..+- -.-...+.--|+.+|.+.+++++|...+++..+.+=. .+.+-|-..
T Consensus 11 ~~ly~~a~~~-l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~-hp~vdYa~Y 88 (142)
T PF13512_consen 11 QELYQEAQEA-LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT-HPNVDYAYY 88 (142)
T ss_pred HHHHHHHHHH-HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CCCccHHHH
Confidence 3445444444 46789999999999988661 1223455666899999999999999999999998764 334678888
Q ss_pred HHHHHHcCCHH
Q 021583 166 ISIYYNRGMHE 176 (310)
Q Consensus 166 i~~~~~~g~~~ 176 (310)
+.|++.....+
T Consensus 89 ~~gL~~~~~~~ 99 (142)
T PF13512_consen 89 MRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHhh
Confidence 88888755544
No 198
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.79 E-value=2.6 Score=34.08 Aligned_cols=102 Identities=12% Similarity=0.014 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCcccC
Q 021583 160 IFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNV--SIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRI 237 (310)
Q Consensus 160 ~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~--~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~ 237 (310)
..|..+..-|++.|+.++|.+.|.++......+.. ..+-.+|+.....+++..+.....+...... .........
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~---~~~d~~~~n 113 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIE---KGGDWERRN 113 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh---ccchHHHHH
Confidence 38999999999999999999999999987666654 6678889999999999999888765211000 000001122
Q ss_pred ChhhhhHhhhccCCChhhHHhhhchhh
Q 021583 238 PAKPKYELDSATEGKTNEVETTKNPNE 264 (310)
Q Consensus 238 ~~~~~~~li~~~~g~~~~a~~~~~~m~ 264 (310)
...+|..|..-..|++..|-+.|-...
T Consensus 114 rlk~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 114 RLKVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHccC
Confidence 244555555558899998888775553
No 199
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=91.56 E-value=4.1 Score=37.65 Aligned_cols=124 Identities=13% Similarity=0.127 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HHhcCCCCChHHHHHHH
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKG-QGRTMGTYFLLLNALAEDGRLDEAEELWTK-IFLDHLEGTPRIFFDKM 165 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~-m~~~~~~~~~~~~y~~l 165 (310)
...|...|+.-.+...++.|..+|-+.++.| +.++++.|+++|..++. |+...|-.+|+- |+..+ .+.+--+-.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f~---d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKFP---DSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhCC---CchHHHHHH
Confidence 3567888888888888999999999999988 77999999999998875 677788888874 44332 222334556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 021583 166 ISIYYNRGMHEKMFEIFADMEELGVRPN--VSIVSMMGNAFQKLGMLDKYEKL 216 (310)
Q Consensus 166 i~~~~~~g~~~~a~~l~~~m~~~g~~p~--~~ty~~li~~~~~~g~~~~a~~l 216 (310)
+..+..-++-+.|..+|+.-... +.-+ ...|..+|+-=..-|++.-|..+
T Consensus 473 l~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sL 524 (660)
T COG5107 473 LLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSL 524 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhH
Confidence 67778889999999999844322 1112 36788888888888888666444
No 200
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=91.50 E-value=5.1 Score=30.61 Aligned_cols=116 Identities=18% Similarity=0.088 Sum_probs=81.3
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELW 146 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~ 146 (310)
+..+.....++.+...+ ..+...+|.++..|++.. ..+..+.+.. ..+.+.....++.|-+.+.++++.-++
T Consensus 21 ~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l~~~~~~l~ 92 (140)
T smart00299 21 NLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKLYEEAVELY 92 (140)
T ss_pred CcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCcHHHHHHHH
Confidence 34666788888888777 467788999999999874 4555555553 244566667899999999999999999
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 021583 147 TKIFLDHLEGTPRIFFDKMISIYYNR-GMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQK 206 (310)
Q Consensus 147 ~~m~~~~~~~~~~~~y~~li~~~~~~-g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~ 206 (310)
.++.. |...+..+... ++++.|.+.+.. .-+...|..++..+..
T Consensus 93 ~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 93 KKDGN----------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALLD 137 (140)
T ss_pred HhhcC----------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHHc
Confidence 87632 22333333444 788888888776 2256677777776654
No 201
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=91.28 E-value=5.3 Score=40.47 Aligned_cols=126 Identities=13% Similarity=0.042 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHH-
Q 021583 89 ITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMIS- 167 (310)
Q Consensus 89 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~- 167 (310)
..|..|-..|+..-+..+|.+-|+...+-. .-+......+.+.|+...+++.|..+.-.--+... .-...||.+=.
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~--a~~~k~nW~~rG 569 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAP--AFACKENWVQRG 569 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhch--HHHHHhhhhhcc
Confidence 467777777777777788888887766542 34567777888999999999999988333222211 11123443333
Q ss_pred -HHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 168 -IYYNRGMHEKMFEIFADMEELGVRP-NVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 168 -~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
.|.+.++...|..-|+.-.+ +.| |...|..|..+|.+.|+..-|.++|.+
T Consensus 570 ~yyLea~n~h~aV~~fQsALR--~dPkD~n~W~gLGeAY~~sGry~~AlKvF~k 621 (1238)
T KOG1127|consen 570 PYYLEAHNLHGAVCEFQSALR--TDPKDYNLWLGLGEAYPESGRYSHALKVFTK 621 (1238)
T ss_pred ccccCccchhhHHHHHHHHhc--CCchhHHHHHHHHHHHHhcCceehHHHhhhh
Confidence 34567777777777766554 445 678899999999999999999999965
No 202
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.17 E-value=2 Score=31.02 Aligned_cols=56 Identities=14% Similarity=0.268 Sum_probs=34.6
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHH
Q 021583 73 YGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWML-SKGQGRTMGTYFLLL 130 (310)
Q Consensus 73 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~-~~g~~p~~~ty~~ll 130 (310)
.+-+..+....+.|++....+.+.+|.+.+++..|.++|+-.+ +.|-+-+ .|.-++
T Consensus 30 rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~--~Y~~~l 86 (108)
T PF02284_consen 30 RRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKE--IYPYIL 86 (108)
T ss_dssp HHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TT--HHHHHH
T ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHH--HHHHHH
Confidence 4555666677778888888888888888888888888887777 4443322 454444
No 203
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=90.93 E-value=10 Score=33.05 Aligned_cols=102 Identities=9% Similarity=-0.083 Sum_probs=74.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCCChHHH
Q 021583 85 EFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAED---GRLDEAEELWTKIFLDHLEGTPRIF 161 (310)
Q Consensus 85 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~---g~~~~A~~~~~~m~~~~~~~~~~~~ 161 (310)
+-|...|--|-..|...|+++.|..-|..-... ..+|...+..+-.++... .+..++..+|++.....- .+..+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~--~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP--ANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC--ccHHH
Confidence 557888999999999999999999999886643 234445555555544433 335688999999887653 45456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 021583 162 FDKMISIYYNRGMHEKMFEIFADMEELG 189 (310)
Q Consensus 162 y~~li~~~~~~g~~~~a~~l~~~m~~~g 189 (310)
-.-|-..+...|++.+|...|+.|....
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 6677778888999999999999998753
No 204
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.62 E-value=2.3 Score=30.42 Aligned_cols=58 Identities=14% Similarity=0.251 Sum_probs=43.7
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHH
Q 021583 72 VYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWML-SKGQGRTMGTYFLLLN 131 (310)
Q Consensus 72 ~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~-~~g~~p~~~ty~~ll~ 131 (310)
+.+.+..+....+.|++....+.+.+|.+.+++..|.++|+-.+ +.|. +...|..+++
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 35667777888888999999999999999999999999998777 4433 3445655543
No 205
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.21 E-value=0.79 Score=26.08 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=10.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 021583 126 YFLLLNALAEDGRLDEAEELWTK 148 (310)
Q Consensus 126 y~~ll~~~~~~g~~~~A~~~~~~ 148 (310)
|+.|-+.|.+.|++++|.++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444445555555555555444
No 206
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=90.18 E-value=15 Score=33.76 Aligned_cols=50 Identities=14% Similarity=0.084 Sum_probs=27.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 96 KTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELW 146 (310)
Q Consensus 96 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~ 146 (310)
+.+...|++..|.-.|...... -+-+...|.-|+..|...|++.+|.-+-
T Consensus 342 ~lL~~~~R~~~A~IaFR~Aq~L-ap~rL~~Y~GL~hsYLA~~~~kEA~~~A 391 (564)
T KOG1174|consen 342 RLLIALERHTQAVIAFRTAQML-APYRLEIYRGLFHSYLAQKRFKEANALA 391 (564)
T ss_pred HHHHhccchHHHHHHHHHHHhc-chhhHHHHHHHHHHHHhhchHHHHHHHH
Confidence 3445556666665555543322 1124566666666666666666655443
No 207
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.79 E-value=5 Score=35.34 Aligned_cols=104 Identities=7% Similarity=-0.027 Sum_probs=61.9
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 021583 81 AWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSK---GQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGT 157 (310)
Q Consensus 81 ~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~ 157 (310)
..|.+....+...++..-....+++.+...+-.++.. ...|+...|. .+. ++..-+++++..++..=.+-|+ -+
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~-~ir-lllky~pq~~i~~l~npIqYGi-F~ 133 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHT-WIR-LLLKYDPQKAIYTLVNPIQYGI-FP 133 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHH-HHH-HHHccChHHHHHHHhCcchhcc-cc
Confidence 3455556666666666666566677777666665522 2233332222 122 2223356677777777777777 36
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 021583 158 PRIFFDKMISIYYNRGMHEKMFEIFADMEE 187 (310)
Q Consensus 158 ~~~~y~~li~~~~~~g~~~~a~~l~~~m~~ 187 (310)
|..+++.+|..|.+.+++.+|..+.-.|..
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 667777777777777777777776555543
No 208
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.40 E-value=1 Score=25.58 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 021583 161 FFDKMISIYYNRGMHEKMFEIFADME 186 (310)
Q Consensus 161 ~y~~li~~~~~~g~~~~a~~l~~~m~ 186 (310)
+|+.|-..|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677777778888888877777743
No 209
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=89.27 E-value=18 Score=33.31 Aligned_cols=86 Identities=12% Similarity=0.083 Sum_probs=55.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCC
Q 021583 95 LKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGM 174 (310)
Q Consensus 95 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~ 174 (310)
.......+++..|+.+-++-.... ..+...|-.=-+.+...|+.++|.=.|+....-. |.+..+|.-|+..|...|+
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La--p~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA--PYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc--hhhHHHHHHHHHHHHhhch
Confidence 344445566666666665544332 2233444333456667788999988888766542 3444689999999999999
Q ss_pred HHHHHHHHH
Q 021583 175 HEKMFEIFA 183 (310)
Q Consensus 175 ~~~a~~l~~ 183 (310)
+.+|.-+-+
T Consensus 384 ~kEA~~~An 392 (564)
T KOG1174|consen 384 FKEANALAN 392 (564)
T ss_pred HHHHHHHHH
Confidence 888765443
No 210
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.90 E-value=3.5 Score=36.29 Aligned_cols=101 Identities=13% Similarity=0.049 Sum_probs=66.7
Q ss_pred cCchHhHHHHHHhcC--CcHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 021583 52 ISKSAKLVTCIKGLS--NVKEEVYGALDSFIAW---ELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTY 126 (310)
Q Consensus 52 ~~~~~~~~~~l~~~~--~~~~~~~~~~~~m~~~---~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty 126 (310)
.....+++.++.-.+ +.++.+...+-+++.. -..|+. +-.+.+..|.+ -++.+++.+...=.+.|+-||.+++
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccchhhH
Confidence 344444555543333 4445555555544421 112222 22233444444 3688999999998999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 021583 127 FLLLNALAEDGRLDEAEELWTKIFLDHL 154 (310)
Q Consensus 127 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~ 154 (310)
+.+|+.+.+.+++.+|.++...|.....
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~qe~ 166 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMMQEA 166 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887776654
No 211
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=88.22 E-value=2.5 Score=25.16 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=12.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 021583 126 YFLLLNALAEDGRLDEAEELWTKIFLD 152 (310)
Q Consensus 126 y~~ll~~~~~~g~~~~A~~~~~~m~~~ 152 (310)
+..+-..|...|++++|+++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444444555555555555544443
No 212
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.89 E-value=4.3 Score=35.26 Aligned_cols=79 Identities=13% Similarity=0.109 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCChHHHH
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFL-----DHLEGTPRIFF 162 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~~y 162 (310)
..++..++..+...|+++.+.+.++.+... ..-+...|..+|.+|.+.|+...|...|+++.+ .|+. |...+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~-dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~-P~~~~~ 230 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIEL-DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGID-PAPELR 230 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCC-ccHHHH
Confidence 457888899999999999999999998876 366889999999999999999999999998876 4664 333444
Q ss_pred HHHHHH
Q 021583 163 DKMISI 168 (310)
Q Consensus 163 ~~li~~ 168 (310)
......
T Consensus 231 ~~y~~~ 236 (280)
T COG3629 231 ALYEEI 236 (280)
T ss_pred HHHHHH
Confidence 444444
No 213
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=87.80 E-value=28 Score=33.79 Aligned_cols=179 Identities=10% Similarity=-0.026 Sum_probs=124.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 021583 87 PLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMI 166 (310)
Q Consensus 87 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li 166 (310)
+.+.|..+--.+...+++++|.+.|....+.+ +-|...+.-|--.-.+.|+.+.......++.+... .....|..+.
T Consensus 74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~--~~ra~w~~~A 150 (700)
T KOG1156|consen 74 SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP--SQRASWIGFA 150 (700)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh--hhHHHHHHHH
Confidence 45677777777777789999999999887664 44566776666666778889988888888887643 4446899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHH------HHhcCCHHHHHHHHHhCCCCccchheeccCcccCCh
Q 021583 167 SIYYNRGMHEKMFEIFADMEELG-VRPNVSIVSMMGNA------FQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPA 239 (310)
Q Consensus 167 ~~~~~~g~~~~a~~l~~~m~~~g-~~p~~~ty~~li~~------~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~ 239 (310)
-++--.|+...|.++.++..+.. -.|+...|.-...- ..+.|.+++|.+.+....+... +.+.-.....+.
T Consensus 151 vs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~--Dkla~~e~ka~l 228 (700)
T KOG1156|consen 151 VAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIV--DKLAFEETKADL 228 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHH--HHHHHhhhHHHH
Confidence 99999999999999999998764 45676665433322 4567889999888765443311 110001111222
Q ss_pred hhhhHhhhccCCChhhHHhhhchhhcCCCCCchhhhhhhh
Q 021583 240 KPKYELDSATEGKTNEVETTKNPNESSEEPEAAANLNESL 279 (310)
Q Consensus 240 ~~~~~li~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 279 (310)
.. +.++.++|..++..+.... |+-.-|+..+
T Consensus 229 ~~-------kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l 259 (700)
T KOG1156|consen 229 LM-------KLGQLEEAVKVYRRLLERN--PDNLDYYEGL 259 (700)
T ss_pred HH-------HHhhHHhHHHHHHHHHhhC--chhHHHHHHH
Confidence 22 5888888988888887654 6666666665
No 214
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=87.76 E-value=23 Score=33.13 Aligned_cols=116 Identities=18% Similarity=0.110 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH-------HC----------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWML-------SK----------GQGRTMGTYFLLLNALAEDGRLDEAEELWTKIF 150 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~-------~~----------g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~ 150 (310)
..-.+.++.-+-+.|.++.|+++-.+-. +. .-..+...|..|-+...+.|+++-|++.|.+..
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 3346777777777777777776654322 11 224578899999999999999999999998744
Q ss_pred hcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 151 LDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 151 ~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
+ |..|+--|.-.|+.+...++.+.-...|- ++....++.-.|++++..+++.+
T Consensus 375 d----------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 375 D----------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred C----------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 2 77788888889999888888877776664 67777778888899888888765
No 215
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=87.74 E-value=21 Score=32.43 Aligned_cols=162 Identities=14% Similarity=0.051 Sum_probs=95.9
Q ss_pred HHHHHHhcCCc--HHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 021583 58 LVTCIKGLSNV--KEEVYGALDSFIAW---ELEFPLITVKKALKTLEN---EKDWKRIIQVTKWMLSKGQGRTMGTYFLL 129 (310)
Q Consensus 58 ~~~~l~~~~~~--~~~~~~~~~~m~~~---~~~p~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~ty~~l 129 (310)
+.+.+.++.+. .+...++.+.+... .+.-+...--...-++.+ .|+.++|.+++..+....-.++..+|..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 34444444432 23345555565543 111122222344555666 89999999999997777778888899888
Q ss_pred HHHHHhc---------CCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCC-HHHHHHHH---H-HHHHCCCC---C
Q 021583 130 LNALAED---------GRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGM-HEKMFEIF---A-DMEELGVR---P 192 (310)
Q Consensus 130 l~~~~~~---------g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~-~~~a~~l~---~-~m~~~g~~---p 192 (310)
-..|-.. ...++|.+.|.+--+..-..-+-+.+-+|+........ -.+..++- . ...++|.. .
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 7766321 23678888888765543211222344455544332111 22333333 2 22234432 4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 193 NVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 193 ~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
|-.-+.+++.++.-.|+.++|.+..++
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~ 330 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEK 330 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 567788999999999999999999876
No 216
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=87.63 E-value=14 Score=30.30 Aligned_cols=143 Identities=15% Similarity=0.174 Sum_probs=86.3
Q ss_pred CcHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh--------
Q 021583 67 NVKEEVYGALDSFIAW--ELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSK-GQGRTMGTYFLLLNALAE-------- 135 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~--~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~ty~~ll~~~~~-------- 135 (310)
+....|...|+++... +-+.-..+.-.+..++.+.|+++.|...|+..... .-.|. .-+...+.|.+.
T Consensus 19 g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~-~~~A~Y~~g~~~~~~~~~~~ 97 (203)
T PF13525_consen 19 GDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK-ADYALYMLGLSYYKQIPGIL 97 (203)
T ss_dssp T-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT-HHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc-hhhHHHHHHHHHHHhCccch
Confidence 4455557788887764 22233456678888999999999999999997744 33333 233333333332
Q ss_pred -----cCCHHHHHHHHHHHHhcCCCCChHHH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 021583 136 -----DGRLDEAEELWTKIFLDHLEGTPRIF-----------------FDKMISIYYNRGMHEKMFEIFADMEELGVRPN 193 (310)
Q Consensus 136 -----~g~~~~A~~~~~~m~~~~~~~~~~~~-----------------y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~ 193 (310)
.+...+|...|+++.+.-=. +... =-.+...|.+.|.+..|..-++.+.+. -|+
T Consensus 98 ~~~~D~~~~~~A~~~~~~li~~yP~--S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~--yp~ 173 (203)
T PF13525_consen 98 RSDRDQTSTRKAIEEFEELIKRYPN--SEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIEN--YPD 173 (203)
T ss_dssp -TT---HHHHHHHHHHHHHHHH-TT--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH--STT
T ss_pred hcccChHHHHHHHHHHHHHHHHCcC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCC
Confidence 12245677778777765211 1111 111445677888899898888888765 243
Q ss_pred H----HHHHHHHHHHHhcCCHHHHH
Q 021583 194 V----SIVSMMGNAFQKLGMLDKYE 214 (310)
Q Consensus 194 ~----~ty~~li~~~~~~g~~~~a~ 214 (310)
+ ...-.|+.+|-+.|..+.+.
T Consensus 174 t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 174 TPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp SHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CchHHHHHHHHHHHHHHhCChHHHH
Confidence 3 45677888888888888554
No 217
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.58 E-value=1.7 Score=25.07 Aligned_cols=25 Identities=36% Similarity=0.377 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 021583 125 TYFLLLNALAEDGRLDEAEELWTKI 149 (310)
Q Consensus 125 ty~~ll~~~~~~g~~~~A~~~~~~m 149 (310)
+++.|-..|...|++++|+.++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 3444444444444444444444443
No 218
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.30 E-value=22 Score=36.61 Aligned_cols=87 Identities=11% Similarity=0.050 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMIS 167 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~ 167 (310)
...|..+..+=.+.|...+|.+-|-. .-|...|.-.++...+.|.+++-.+++...++..-+ + ..=+.||-
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E-~--~id~eLi~ 1174 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE-P--YIDSELIF 1174 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC-c--cchHHHHH
Confidence 34566676776667777666665522 236788999999999999999999988776665442 2 34678999
Q ss_pred HHHHcCCHHHHHHHHH
Q 021583 168 IYYNRGMHEKMFEIFA 183 (310)
Q Consensus 168 ~~~~~g~~~~a~~l~~ 183 (310)
+|++.++..+.++++.
T Consensus 1175 AyAkt~rl~elE~fi~ 1190 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA 1190 (1666)
T ss_pred HHHHhchHHHHHHHhc
Confidence 9999999998888664
No 219
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=87.25 E-value=25 Score=32.72 Aligned_cols=131 Identities=12% Similarity=0.079 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHH
Q 021583 69 KEEVYGALDSFIAWE-LEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTY-FLLLNALAEDGRLDEAEELW 146 (310)
Q Consensus 69 ~~~~~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty-~~ll~~~~~~g~~~~A~~~~ 146 (310)
.+.|-.+|-++.+.+ +.+++..+++.|..+|. |+..-|..+|+.=... -||...| +-.+.-+...++-+.|..+|
T Consensus 413 l~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLF 489 (660)
T COG5107 413 LEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALF 489 (660)
T ss_pred HHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHH
Confidence 455678888888888 66788999999988875 6788999999873322 3566555 45788888999999999999
Q ss_pred HHHHhcCCCCCh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 021583 147 TKIFLDHLEGTP--RIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQK 206 (310)
Q Consensus 147 ~~m~~~~~~~~~--~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~ 206 (310)
+.-.++-- .+ ...|..+|.-=..-|+...+..+-+.|.+ +.|-..+-....+-|+-
T Consensus 490 etsv~r~~--~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~i 547 (660)
T COG5107 490 ETSVERLE--KTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYAI 547 (660)
T ss_pred HHhHHHHH--HhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHhh
Confidence 95554321 11 14799999999999999999999888887 34655555555555543
No 220
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=87.22 E-value=3.7 Score=40.89 Aligned_cols=83 Identities=16% Similarity=0.305 Sum_probs=68.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 021583 132 ALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYY--NRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGM 209 (310)
Q Consensus 132 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~--~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~ 209 (310)
.....+++.+|.+-.+++.++. |+ ..|...+.|+. +.|+.++|..+++.....+.. |..|...+-.+|...|+
T Consensus 18 d~ld~~qfkkal~~~~kllkk~---Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~ 92 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKH---PN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGK 92 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHC---CC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhh
Confidence 3445678889999999888873 33 56788888775 799999999999988776555 88999999999999999
Q ss_pred HHHHHHHHHh
Q 021583 210 LDKYEKLKKK 219 (310)
Q Consensus 210 ~~~a~~l~~~ 219 (310)
.|+|..+|++
T Consensus 93 ~d~~~~~Ye~ 102 (932)
T KOG2053|consen 93 LDEAVHLYER 102 (932)
T ss_pred hhHHHHHHHH
Confidence 9999999986
No 221
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=86.98 E-value=34 Score=33.89 Aligned_cols=125 Identities=15% Similarity=0.090 Sum_probs=96.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 021583 90 TVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIY 169 (310)
Q Consensus 90 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~ 169 (310)
.|...-..+.+.++.++|..-+.+..+. .......|.-.-..+...|.+.+|.+.|..-...+ |....+-.++-..+
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld--P~hv~s~~Ala~~l 728 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD--PDHVPSMTALAELL 728 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC--CCCcHHHHHHHHHH
Confidence 3555666777788888887777665544 23445666666667778899999999998877654 23335889999999
Q ss_pred HHcCCHHHHHH--HHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 170 YNRGMHEKMFE--IFADMEELGVRP-NVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 170 ~~~g~~~~a~~--l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
.+.|+..-|.. ++.++.+.+ | +...|-.+-..+-+.|+.++|-..|.-
T Consensus 729 le~G~~~la~~~~~L~dalr~d--p~n~eaW~~LG~v~k~~Gd~~~Aaecf~a 779 (799)
T KOG4162|consen 729 LELGSPRLAEKRSLLSDALRLD--PLNHEAWYYLGEVFKKLGDSKQAAECFQA 779 (799)
T ss_pred HHhCCcchHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 99999888888 888888754 4 578899999999999999999988863
No 222
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.71 E-value=11 Score=37.00 Aligned_cols=116 Identities=16% Similarity=0.126 Sum_probs=90.4
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHH
Q 021583 82 WELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIF 161 (310)
Q Consensus 82 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 161 (310)
.|....-.+.+-.+.-+..-|+-.+|.++-.+.+ -||...|--=+.+++..+++++-+++-+.++. - +.
T Consensus 678 ~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks-P------IG 746 (829)
T KOG2280|consen 678 FGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS-P------IG 746 (829)
T ss_pred hccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC-C------CC
Confidence 4555555677778888888999999988876644 47888888889999999999988877666543 1 46
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 162 FDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLK 217 (310)
Q Consensus 162 y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~ 217 (310)
|.-.+.+|.+.|+.++|.+.+.+... . .-...+|.+.|++.+|.++-
T Consensus 747 y~PFVe~c~~~~n~~EA~KYiprv~~-----l----~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 747 YLPFVEACLKQGNKDEAKKYIPRVGG-----L----QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred chhHHHHHHhcccHHHHhhhhhccCC-----h----HHHHHHHHHhccHHHHHHHH
Confidence 88889999999999999999877332 1 15678899999999987774
No 223
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=86.59 E-value=2.6 Score=28.90 Aligned_cols=51 Identities=16% Similarity=0.266 Sum_probs=35.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCChHH-HHHHHHHHHHHcCCHHHHHHH
Q 021583 130 LNALAEDGRLDEAEELWTKIFLDHLEGTPRI-FFDKMISIYYNRGMHEKMFEI 181 (310)
Q Consensus 130 l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~y~~li~~~~~~g~~~~a~~l 181 (310)
+..| ...+-++|+..|....+.-..+.+.. +...|+.+|+..|++.+++++
T Consensus 14 lkLY-~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 14 LKLY-HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred HHHh-ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 56677788888887777665433332 777888888888888777665
No 224
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=86.46 E-value=8.1 Score=29.61 Aligned_cols=63 Identities=19% Similarity=0.319 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 021583 126 YFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGV 190 (310)
Q Consensus 126 y~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~ 190 (310)
...-++.+.+.|+-|+-.++..++.+.+- ++....-.+-++|.+.|+..++-+++.+.-+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~~--~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNEE--INPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhccC--CCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34445555555555555555555544222 2223344445555555555555555555555554
No 225
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=86.17 E-value=21 Score=33.68 Aligned_cols=145 Identities=10% Similarity=-0.033 Sum_probs=97.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChH-----HHHHHHHHHHHHc----CCHHHHHHHHHHHHHCCCCCCHHH
Q 021583 126 YFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPR-----IFFDKMISIYYNR----GMHEKMFEIFADMEELGVRPNVSI 196 (310)
Q Consensus 126 y~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-----~~y~~li~~~~~~----g~~~~a~~l~~~m~~~g~~p~~~t 196 (310)
+..++...+-.||-+.+++.+.+-.+.+-..-+. ..|+.++..++.. ...+.|.+++..+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 3556677788899999999998766543211221 2477777777654 5678899999999874 588766
Q ss_pred HHHHH-HHHHhcCCHHHHHHHHHhCCCCccchheeccCcccCChhhhhHhhhc-cCCChhhHHhhhchhhcCCCCCchhh
Q 021583 197 VSMMG-NAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSA-TEGKTNEVETTKNPNESSEEPEAAAN 274 (310)
Q Consensus 197 y~~li-~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~-~~g~~~~a~~~~~~m~~~~~~p~~~~ 274 (310)
|...- +.+...|++++|.+.|++.......+.. ......|...+-. -.++|++|.+.+..+....-. +-..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Q------l~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~ 341 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQ------LHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAF 341 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHh------HHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHH
Confidence 64443 3356789999999999875433333333 2344555554444 799999999999998764322 4455
Q ss_pred hhhhh
Q 021583 275 LNESL 279 (310)
Q Consensus 275 ~~~ll 279 (310)
|..+.
T Consensus 342 Y~Y~~ 346 (468)
T PF10300_consen 342 YAYLA 346 (468)
T ss_pred HHHHH
Confidence 55554
No 226
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=85.92 E-value=11 Score=35.43 Aligned_cols=76 Identities=11% Similarity=0.115 Sum_probs=53.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 021583 129 LLNALAEDGRLDEAEELWTKIFLDHLEGTP-RIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPN-VSIVSMMGNAFQ 205 (310)
Q Consensus 129 ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~ty~~li~~~~ 205 (310)
|-..+-+.|+.++|.+.|++|.+..- ..+ ....-.||.++...+...++..++..-........ ..+|+..+--+.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p-~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFP-NLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCC-ccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 44444577999999999999986432 122 24788999999999999999999999754333222 367776554333
No 227
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=85.91 E-value=37 Score=33.26 Aligned_cols=146 Identities=10% Similarity=0.038 Sum_probs=109.0
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELW 146 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~ 146 (310)
+..+....+|++....- +-....|-.....+...|+.-.|..++....+.. ..+...+-.-++.-..+.+++.|..+|
T Consensus 564 gt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~ll 641 (913)
T KOG0495|consen 564 GTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLL 641 (913)
T ss_pred CcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHH
Confidence 34444455555554432 2334566667778888999999999999887663 336677888888899999999999999
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 147 TKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNV-SIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 147 ~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
.+-+..+ ++...|.--++.-.-.+..++|.+++++-.+. -|+- ..|-.+-..+-..++++.|...|..
T Consensus 642 akar~~s---gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~ 710 (913)
T KOG0495|consen 642 AKARSIS---GTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQ 710 (913)
T ss_pred HHHhccC---CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 9888753 44457777777778889999999999887763 4664 6677777888889999998888753
No 228
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.34 E-value=12 Score=32.17 Aligned_cols=94 Identities=18% Similarity=0.177 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC-HHHHHHHH
Q 021583 125 TYFLLLNALAEDGRLDEAEELWTKIFLDHLE-GTPRIFFDKMISIYYNRGMHEKMFEIFADMEEL-GVRPN-VSIVSMMG 201 (310)
Q Consensus 125 ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~-g~~p~-~~ty~~li 201 (310)
.|+.-+..| +.|++.+|..-|....+..=. +.....+-.|-.++...|+.++|..+|..+.+. +--|- ...+--|-
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 455544433 334466666666555554210 001123445555666666666666666555542 11122 13344444
Q ss_pred HHHHhcCCHHHHHHHHHh
Q 021583 202 NAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 202 ~~~~~~g~~~~a~~l~~~ 219 (310)
.+..+.|+.|+|...|++
T Consensus 223 ~~~~~l~~~d~A~atl~q 240 (262)
T COG1729 223 VSLGRLGNTDEACATLQQ 240 (262)
T ss_pred HHHHHhcCHHHHHHHHHH
Confidence 555556666666665554
No 229
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=85.27 E-value=18 Score=31.54 Aligned_cols=97 Identities=15% Similarity=0.087 Sum_probs=75.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCC-CHH
Q 021583 120 GRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYN---RGMHEKMFEIFADMEELGVRP-NVS 195 (310)
Q Consensus 120 ~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~---~g~~~~a~~l~~~m~~~g~~p-~~~ 195 (310)
.-|...|-.|-..|...|+.+.|..-|.+-.+..- .+...+..+-.++.. .....++..+|+++.+. .| |..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g--~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~ir 228 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG--DNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIR 228 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHH
Confidence 44789999999999999999999999999887754 343445555554443 34567889999998874 35 567
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC
Q 021583 196 IVSMMGNAFQKLGMLDKYEKLKKKY 220 (310)
Q Consensus 196 ty~~li~~~~~~g~~~~a~~l~~~~ 220 (310)
+-..|-..+...|++.+|...|+.+
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~l 253 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQML 253 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHH
Confidence 7777888899999999999888764
No 230
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=84.50 E-value=14 Score=28.33 Aligned_cols=66 Identities=18% Similarity=0.096 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHL 154 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~ 154 (310)
..-+...+..+.++|+-+.-.+++.++.+ +-+++....-.+-.+|.+-|+..++.+++.+.-+.|+
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 45567788888889999999999998776 4478888888999999999999999999999999987
No 231
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.92 E-value=25 Score=31.48 Aligned_cols=116 Identities=8% Similarity=-0.053 Sum_probs=50.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHH--HHHHHHHHHcCCHHHH
Q 021583 101 EKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFF--DKMISIYYNRGMHEKM 178 (310)
Q Consensus 101 ~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y--~~li~~~~~~g~~~~a 178 (310)
.|++.+|-..++++.+. .+.|..++.--=++|.-.|+.+.-...+++..-.--...|-.+| ..+--++..+|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 34444444444444433 33444444444455555555555555555444331101221222 2222233345555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 021583 179 FEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKK 218 (310)
Q Consensus 179 ~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~ 218 (310)
++.-++-.+-+ +-|...-.++...+-..|+..++.+++.
T Consensus 195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 195 EKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred HHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence 55544433322 1233444444444445555555555443
No 232
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.63 E-value=3.5 Score=23.62 Aligned_cols=29 Identities=3% Similarity=0.125 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLS 116 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 116 (310)
..+++.|-..|...|++++|..++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 46889999999999999999999998653
No 233
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=83.51 E-value=14 Score=28.31 Aligned_cols=52 Identities=21% Similarity=0.208 Sum_probs=25.8
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 021583 133 LAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADME 186 (310)
Q Consensus 133 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~ 186 (310)
++..|++++|++.|.+-..-- |.....||.=..+|.-.|+.++|+.=+++-.
T Consensus 53 laE~g~Ld~AlE~F~qal~l~--P~raSayNNRAQa~RLq~~~e~ALdDLn~Al 104 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA--PERASAYNNRAQALRLQGDDEEALDDLNKAL 104 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc--ccchHhhccHHHHHHHcCChHHHHHHHHHHH
Confidence 344455555555555544331 1222345555555555555555555554444
No 234
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.37 E-value=31 Score=30.37 Aligned_cols=90 Identities=17% Similarity=0.246 Sum_probs=61.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-------------CCH----
Q 021583 132 ALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVR-------------PNV---- 194 (310)
Q Consensus 132 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~-------------p~~---- 194 (310)
...+.|+.+.|++-|....+-+.- -|.+.||.-+..|. .|+.+.|.++..+..+.|++ ||.
T Consensus 153 llykegqyEaAvqkFqaAlqvsGy-qpllAYniALaHy~-~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvg 230 (459)
T KOG4340|consen 153 LLYKEGQYEAAVQKFQAALQVSGY-QPLLAYNLALAHYS-SRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVG 230 (459)
T ss_pred eeeccccHHHHHHHHHHHHhhcCC-CchhHHHHHHHHHh-hhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhccc
Confidence 345778889999999887776652 55678888877665 68888999999888887754 332
Q ss_pred ----HHHHHHHHHH-------HhcCCHHHHHHHHHhCCCC
Q 021583 195 ----SIVSMMGNAF-------QKLGMLDKYEKLKKKYPPP 223 (310)
Q Consensus 195 ----~ty~~li~~~-------~~~g~~~~a~~l~~~~~p~ 223 (310)
..-+.++.++ .+.|+.+-|.+-+-.|.|.
T Consensus 231 Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPR 270 (459)
T KOG4340|consen 231 NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPR 270 (459)
T ss_pred chHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCc
Confidence 1123344433 3567777777777666665
No 235
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=83.22 E-value=0.46 Score=36.63 Aligned_cols=83 Identities=17% Similarity=0.211 Sum_probs=57.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 021583 129 LLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLG 208 (310)
Q Consensus 129 ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g 208 (310)
+|+.+.+.+.+.....+++.+...+.. .+...++.++..|++.++.++.+++++. .+..-...+++.|.+.|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~-~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKE-NNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHG 84 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC--SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccc-cCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcc
Confidence 456666777788888888888866542 4456788888888888877888887772 11123355667778888
Q ss_pred CHHHHHHHHHh
Q 021583 209 MLDKYEKLKKK 219 (310)
Q Consensus 209 ~~~~a~~l~~~ 219 (310)
.++++..++.+
T Consensus 85 l~~~a~~Ly~~ 95 (143)
T PF00637_consen 85 LYEEAVYLYSK 95 (143)
T ss_dssp SHHHHHHHHHC
T ss_pred hHHHHHHHHHH
Confidence 88888777655
No 236
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=83.16 E-value=42 Score=31.69 Aligned_cols=82 Identities=13% Similarity=0.052 Sum_probs=60.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChH-HHHHHHHHHH
Q 021583 92 KKALKTLENEKDWKRIIQVTKWMLSK-GQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPR-IFFDKMISIY 169 (310)
Q Consensus 92 ~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~y~~li~~~ 169 (310)
--+-.++.+.|+.++|.+.|.+|.+. ...-+.....+|+..+...+...++..++.+-.+... |... .+|+.-+-.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l-pkSAti~YTaALLka 341 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL-PKSATICYTAALLKA 341 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC-CchHHHHHHHHHHHH
Confidence 34566667889999999999999754 2223456788999999999999999999999766555 2333 4888876554
Q ss_pred HHcCC
Q 021583 170 YNRGM 174 (310)
Q Consensus 170 ~~~g~ 174 (310)
...++
T Consensus 342 Rav~d 346 (539)
T PF04184_consen 342 RAVGD 346 (539)
T ss_pred Hhhcc
Confidence 44443
No 237
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=82.84 E-value=25 Score=28.79 Aligned_cols=96 Identities=16% Similarity=0.067 Sum_probs=52.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHH-HHHhcCC--HHHHHHHHHHHHhcCCCCChH---HHH
Q 021583 91 VKKALKTLENEKDWKRIIQVTKWMLSK--GQGRTMGTYFLLLN-ALAEDGR--LDEAEELWTKIFLDHLEGTPR---IFF 162 (310)
Q Consensus 91 ~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~ty~~ll~-~~~~~g~--~~~A~~~~~~m~~~~~~~~~~---~~y 162 (310)
++..+-.....|++++|.+-++.+.+. .++--...|.-+.. +++..+. +-+|.-++.-+....+ |.+. +.+
T Consensus 32 ~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~~-ps~~EL~V~~ 110 (204)
T COG2178 32 LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGRL-PSPEELGVPP 110 (204)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCCC-CCHHHcCCCH
Confidence 334444455667788887777776532 12223445555555 5555543 4566666766666555 2222 234
Q ss_pred HHHHHHHH--------------HcCCHHHHHHHHHHHHH
Q 021583 163 DKMISIYY--------------NRGMHEKMFEIFADMEE 187 (310)
Q Consensus 163 ~~li~~~~--------------~~g~~~~a~~l~~~m~~ 187 (310)
-..|.|.+ +.|+++.|+++++-|..
T Consensus 111 ~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 111 IAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 44555544 45666666666666654
No 238
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=82.80 E-value=13 Score=36.01 Aligned_cols=58 Identities=12% Similarity=0.197 Sum_probs=37.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-----------HHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 021583 164 KMISIYYNRGMHEKMFEIFADMEELGVRPNV-----------SIVSMMGNAFQKLGMLDKYEKLKKKYPPP 223 (310)
Q Consensus 164 ~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~-----------~ty~~li~~~~~~g~~~~a~~l~~~~~p~ 223 (310)
.++.-....++|++|+.+-+...+ ..||. .-|.-.=.+|-++|+-.+|.++++++..+
T Consensus 778 siVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 778 SLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 455566677888888877766543 33443 12334446788888888888888876543
No 239
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=82.47 E-value=20 Score=27.50 Aligned_cols=91 Identities=19% Similarity=0.112 Sum_probs=68.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHH---HHHHHHHHHHcC
Q 021583 97 TLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIF---FDKMISIYYNRG 173 (310)
Q Consensus 97 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~---y~~li~~~~~~g 173 (310)
++...|+++.|++.|.+-..- ..-....||.--.++--.|+.++|++=+.+..+..- +.+... |..=-.-|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag-~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAG-DQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHhC
Confidence 457889999999999997765 345678999999999999999999999988777654 233333 333334566788
Q ss_pred CHHHHHHHHHHHHHCC
Q 021583 174 MHEKMFEIFADMEELG 189 (310)
Q Consensus 174 ~~~~a~~l~~~m~~~g 189 (310)
+-+.|..=|+.--+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 8888888777766655
No 240
>PRK15331 chaperone protein SicA; Provisional
Probab=81.96 E-value=23 Score=28.16 Aligned_cols=91 Identities=10% Similarity=-0.072 Sum_probs=64.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcC
Q 021583 94 ALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRG 173 (310)
Q Consensus 94 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g 173 (310)
.-..+...|++++|..+|.-+.-.+. -|..-+-.|-..+-..+++++|...|...-..+.. .|.. +--.-.+|...|
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p-~f~agqC~l~l~ 119 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRP-VFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCc-cchHHHHHHHhC
Confidence 34455678999999999999876542 22222344455555669999999999877766552 3323 444556778899
Q ss_pred CHHHHHHHHHHHHH
Q 021583 174 MHEKMFEIFADMEE 187 (310)
Q Consensus 174 ~~~~a~~l~~~m~~ 187 (310)
+.+.|...|.....
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999988776
No 241
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=81.95 E-value=8.2 Score=27.94 Aligned_cols=82 Identities=16% Similarity=0.100 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCcccCChhhhhHhhhccCCCh
Q 021583 174 MHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSATEGKT 253 (310)
Q Consensus 174 ~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~g~~ 253 (310)
.+++|..+-+-+...+.. ....--+-+.++...|++++|.++.+.. .-||...|-+|-+.+.|.-
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~--------------~~pdlepw~ALce~rlGl~ 84 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL--------------CYPDLEPWLALCEWRLGLG 84 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC--------------CCchHHHHHHHHHHhhccH
Confidence 356777776666654432 2222233345688899999998885442 2588888888888899999
Q ss_pred hhHHhhhchhhcCCCCC
Q 021583 254 NEVETTKNPNESSEEPE 270 (310)
Q Consensus 254 ~~a~~~~~~m~~~~~~p 270 (310)
+.++..+.+|..+|-|.
T Consensus 85 s~l~~rl~rla~sg~p~ 101 (115)
T TIGR02508 85 SALESRLNRLAASGDPR 101 (115)
T ss_pred HHHHHHHHHHHhCCCHH
Confidence 99999998888887653
No 242
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=81.81 E-value=28 Score=31.70 Aligned_cols=97 Identities=16% Similarity=0.110 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMIS 167 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~ 167 (310)
..+++.|..+|.+.+++..|++.-+.....+ .+|+-..=---.+|...|+++.|+..|.++.+.. |.|-..-+.|+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~el~~ 333 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE--PSNKAARAELIK 333 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--CCcHHHHHHHHH
Confidence 4567888888888888888888888877664 3454444444667777788888888888888763 344445555555
Q ss_pred HHHHcCCH-HHHHHHHHHHHH
Q 021583 168 IYYNRGMH-EKMFEIFADMEE 187 (310)
Q Consensus 168 ~~~~~g~~-~~a~~l~~~m~~ 187 (310)
.--+.... ++..++|..|..
T Consensus 334 l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 334 LKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 55444443 334666777754
No 243
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=81.60 E-value=56 Score=32.07 Aligned_cols=134 Identities=9% Similarity=0.033 Sum_probs=58.4
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChH
Q 021583 82 WELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRT--MGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPR 159 (310)
Q Consensus 82 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 159 (310)
.|+..+...|-.=...|-+.|..--+..+.......|+.-. ..||..--+.|.+.+.++-|..+|....+-- +...
T Consensus 473 ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf--p~k~ 550 (913)
T KOG0495|consen 473 NGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF--PCKK 550 (913)
T ss_pred cceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc--cchh
Confidence 34444444444444444444444444444444444443321 2334444444444444444444444444322 1222
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 021583 160 IFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKK 218 (310)
Q Consensus 160 ~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~ 218 (310)
..|......--..|..+....++.+.... ++-....|-...+.+...|++..|..++.
T Consensus 551 slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~ 608 (913)
T KOG0495|consen 551 SLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILD 608 (913)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHH
Confidence 34444444444444444444444444432 11122344444444555555555555543
No 244
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=81.57 E-value=43 Score=30.70 Aligned_cols=124 Identities=16% Similarity=0.024 Sum_probs=66.4
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCCChHHHHHHH
Q 021583 90 TVKKALKTLEN--EKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALA--EDGRLDEAEELWTKIFLDHLEGTPRIFFDKM 165 (310)
Q Consensus 90 ~~~~li~~~~~--~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~--~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~l 165 (310)
.|..|-.++.. .|+-..|.++-.+-.+. +.-|..-...|+.+-. -.|+.++|.+-|+.|...-- .-......|
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPE--tRllGLRgL 160 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPE--TRLLGLRGL 160 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChH--HHHHhHHHH
Confidence 34455555533 45666666665543322 3344444444544433 45778888888887775411 000122222
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 021583 166 ISIYYNRGMHEKMFEIFADMEELGVRPN-VSIVSMMGNAFQKLGMLDKYEKLKK 218 (310)
Q Consensus 166 i~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~l~~ 218 (310)
.-.--+.|..+.|.+.-++--+ .-|. ...+...+...+..|+||.|+++++
T Consensus 161 yleAqr~GareaAr~yAe~Aa~--~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd 212 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAE--KAPQLPWAARATLEARCAAGDWDGALKLVD 212 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHh--hccCCchHHHHHHHHHHhcCChHHHHHHHH
Confidence 2223456666666666555332 2343 3556667777777777777777775
No 245
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=81.50 E-value=36 Score=29.75 Aligned_cols=98 Identities=17% Similarity=0.278 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHh-c-CCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHH
Q 021583 87 PLITVKKALKTLEN-E-KDWKRIIQVTKWML-SKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFD 163 (310)
Q Consensus 87 ~~~~~~~li~~~~~-~-~~~~~a~~~~~~m~-~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~ 163 (310)
|......+++.... . .....-.++.+-+. ..|-.++.-+...+|+.+++.+++.+-.++|+..........|...|.
T Consensus 163 d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~ 242 (292)
T PF13929_consen 163 DEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWA 242 (292)
T ss_pred ChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHH
Confidence 44444555555443 1 12222333333333 334455666666666666666666666666665554422113334566
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q 021583 164 KMISIYYNRGMHEKMFEIFAD 184 (310)
Q Consensus 164 ~li~~~~~~g~~~~a~~l~~~ 184 (310)
.+|+.....|+..-..++.++
T Consensus 243 ~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 243 EFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHHHcCCHHHHHHHhhC
Confidence 666666666666555555544
No 246
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.16 E-value=32 Score=29.40 Aligned_cols=42 Identities=12% Similarity=0.037 Sum_probs=22.5
Q ss_pred cCCChhhHHhhhch---hhcCCCCCchhhhhhhhhhhhhhhHHHH
Q 021583 249 TEGKTNEVETTKNP---NESSEEPEAAANLNESLEETEANTKELL 290 (310)
Q Consensus 249 ~~g~~~~a~~~~~~---m~~~~~~p~~~~~~~ll~~~~~~~~~l~ 290 (310)
-..++..|+..++. .-..--..+.++...||+.-.++..+.+
T Consensus 202 ~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~gD~E~~ 246 (308)
T KOG1585|consen 202 YAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDEGDIEEI 246 (308)
T ss_pred hHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhccCCHHHH
Confidence 45566667766665 2222234466677777755444444433
No 247
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=80.93 E-value=62 Score=32.15 Aligned_cols=165 Identities=12% Similarity=0.085 Sum_probs=104.1
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 021583 113 WMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRP 192 (310)
Q Consensus 113 ~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p 192 (310)
++....++-|...|..|--++..+|+++.+-+.|++.....+ .....|+.+-..|..+|.-..|..++++-....-.|
T Consensus 313 k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~--~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~p 390 (799)
T KOG4162|consen 313 KLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF--GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQP 390 (799)
T ss_pred HHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh--hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCC
Confidence 334445667889999999999999999999999998776544 333579999999999999999999998866544335
Q ss_pred CH-HHHHHHHHHHH-hcCCHHHHHHHHHh-----------CCCCccc-----hh-------------------------e
Q 021583 193 NV-SIVSMMGNAFQ-KLGMLDKYEKLKKK-----------YPPPKWE-----YR-------------------------Y 229 (310)
Q Consensus 193 ~~-~ty~~li~~~~-~~g~~~~a~~l~~~-----------~~p~~~~-----~~-------------------------~ 229 (310)
+. ..+-..-..|. +.|.+++++..-.+ +.|.... |. .
T Consensus 391 s~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~a 470 (799)
T KOG4162|consen 391 SDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEA 470 (799)
T ss_pred CcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHH
Confidence 43 44433334343 34555555444322 1111110 11 1
Q ss_pred eccCcccCChhhhhHhhhccCCChhhHHhhhchhhc--CCCCCchhhhhhhh
Q 021583 230 IKGKRVRIPAKPKYELDSATEGKTNEVETTKNPNES--SEEPEAAANLNESL 279 (310)
Q Consensus 230 ~~~~~~~~~~~~~~~li~~~~g~~~~a~~~~~~m~~--~~~~p~~~~~~~ll 279 (310)
+......+++..|-++-.+-.++.+.|.+...+... .|..+-..++-.++
T Consensus 471 v~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALv 522 (799)
T KOG4162|consen 471 VQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALV 522 (799)
T ss_pred HhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 112344566666666666677888888877776654 34444455544444
No 248
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=80.64 E-value=4.4 Score=24.03 Aligned_cols=28 Identities=11% Similarity=0.128 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 021583 161 FFDKMISIYYNRGMHEKMFEIFADMEEL 188 (310)
Q Consensus 161 ~y~~li~~~~~~g~~~~a~~l~~~m~~~ 188 (310)
+|..+-..|.+.|++++|+++|+...+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5777888888899999999998888874
No 249
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=80.47 E-value=11 Score=30.68 Aligned_cols=58 Identities=17% Similarity=0.029 Sum_probs=40.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 021583 95 LKTLENEKDWKRIIQVTKWML-SKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLD 152 (310)
Q Consensus 95 i~~~~~~~~~~~a~~~~~~m~-~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~ 152 (310)
+.......+.+......++.. -....|+..+|..++.++...|+.++|.+...++..-
T Consensus 115 l~~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 115 LLLARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HHhhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 333345666666666666655 3345788888888888888888888888888777754
No 250
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=80.46 E-value=35 Score=29.01 Aligned_cols=77 Identities=12% Similarity=0.056 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHH---HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHH
Q 021583 90 TVKKALKTLENEKDWKRIIQVTKWMLSKGQGRT-MGTY---FLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKM 165 (310)
Q Consensus 90 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~ty---~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~l 165 (310)
.|.. ...+.+.|++++|.+.|+.....- |+ .... -.+..+|.+.++.++|...|++..+..-. .+.+-|--.
T Consensus 35 ~Y~~-A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~-~~~~~~a~Y 110 (243)
T PRK10866 35 IYAT-AQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-HPNIDYVLY 110 (243)
T ss_pred HHHH-HHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC-CCchHHHHH
Confidence 4444 444466899999999999988652 33 2332 23567788999999999999999988653 333566666
Q ss_pred HHHHH
Q 021583 166 ISIYY 170 (310)
Q Consensus 166 i~~~~ 170 (310)
+.|.+
T Consensus 111 ~~g~~ 115 (243)
T PRK10866 111 MRGLT 115 (243)
T ss_pred HHHHh
Confidence 66665
No 251
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=80.28 E-value=12 Score=35.25 Aligned_cols=103 Identities=15% Similarity=0.069 Sum_probs=81.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHH-HHHHHHHHHHHcCC
Q 021583 96 KTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRI-FFDKMISIYYNRGM 174 (310)
Q Consensus 96 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~y~~li~~~~~~g~ 174 (310)
++.+..|+++.|..+|-+-.... .+|.+-|+.=..+|++.|++++|++=-.+-++. .|+.. .|+-.=.++.-.|+
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l---~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL---NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc---CCchhhHHHHhHHHHHhccc
Confidence 45567899999999999877653 458899999999999999999998766655544 24443 89999999999999
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 021583 175 HEKMFEIFADMEELGVRP-NVSIVSMMGNAF 204 (310)
Q Consensus 175 ~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~ 204 (310)
+++|+.-|.+=.+. .| +...++-|..++
T Consensus 86 ~~eA~~ay~~GL~~--d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 86 YEEAILAYSEGLEK--DPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHHHhhc--CCchHHHHHhHHHhh
Confidence 99999999886653 45 457777777777
No 252
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=80.08 E-value=20 Score=32.72 Aligned_cols=58 Identities=21% Similarity=0.161 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 161 FFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 161 ~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
+++.|.-+|.+.+++.+|++..+...+.+ .+|....=-=-.+|...|+++.|...|++
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~k 316 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQK 316 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHH
Confidence 56777777777777777777766665532 22333333334556667777777777665
No 253
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.62 E-value=39 Score=29.02 Aligned_cols=142 Identities=14% Similarity=0.108 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 021583 71 EVYGALDSFIAWE-LEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKI 149 (310)
Q Consensus 71 ~~~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m 149 (310)
.|...++.+.++- -.+-+.-+..+ -+-..|++++|.++|+...+.. +.|.++|--=+-..-..|+--+|.+-+.+.
T Consensus 70 lAq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~Y 146 (289)
T KOG3060|consen 70 LAQKCINQLRDRFPGSKRVGKLKAM--LLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEY 146 (289)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHH--HHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 3456666665543 11112222222 2334578899999999888775 556677766666666667777888777777
Q ss_pred HhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHh
Q 021583 150 FLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRP-NVSIVSMMGNAFQKL---GMLDKYEKLKKK 219 (310)
Q Consensus 150 ~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~---g~~~~a~~l~~~ 219 (310)
.+.-. .|...|.-+-.-|...|++++|.-.+++|.- +.| +...|..+...+--. .++.-+.+.|.+
T Consensus 147 L~~F~--~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~ 216 (289)
T KOG3060|consen 147 LDKFM--NDQEAWHELAEIYLSEGDFEKAAFCLEELLL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYER 216 (289)
T ss_pred HHHhc--CcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 77654 5667899999999999999999888888875 345 344455555554333 344456666654
No 254
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=79.01 E-value=30 Score=27.37 Aligned_cols=111 Identities=13% Similarity=0.039 Sum_probs=71.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCC
Q 021583 96 KTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLL-LNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGM 174 (310)
Q Consensus 96 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~l-l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~ 174 (310)
..-.+.++.+++..++.-+.-- +|.......+ ...+...|++++|+.+|+++.+..- ...|..-+-++|-...
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~----~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAP----GFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCC----CChHHHHHHHHHHHHc
Confidence 3345677999999999998854 4655444443 4456788999999999999877643 2346666666666665
Q ss_pred HHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 021583 175 HEKMFEIFAD-MEELGVRPNVSIVSMMGNAFQKLGMLDKYEK 215 (310)
Q Consensus 175 ~~~a~~l~~~-m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ 215 (310)
-|..++.+.. +.+.+-.|+. ..|+..+....+...|..
T Consensus 92 ~D~~Wr~~A~evle~~~d~~a---~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 92 GDPSWRRYADEVLESGADPDA---RALVRALLARADLEPAHE 130 (160)
T ss_pred CChHHHHHHHHHHhcCCChHH---HHHHHHHHHhccccchhh
Confidence 5666666544 5555544444 345566665555555433
No 255
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=78.72 E-value=46 Score=31.19 Aligned_cols=124 Identities=8% Similarity=-0.060 Sum_probs=82.0
Q ss_pred HHHHhcCcCchHhHHHHHHhcCCcHHH---HHHH--HHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 021583 45 ARKRIGTISKSAKLVTCIKGLSNVKEE---VYGA--LDSFIA-WELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKG 118 (310)
Q Consensus 45 ~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~--~~~m~~-~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 118 (310)
..+.++.+-+.|....|+....+...+ |.+. ++...+ ..-..+...|..|-....++|+++.|.+.|+....
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-- 375 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKAKD-- 375 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--
Confidence 444444555556666666555533222 1111 222222 23334788999999999999999999999987543
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 021583 119 QGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFAD 184 (310)
Q Consensus 119 ~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~ 184 (310)
|..|+-.|.-.|+.++-.++.+....+|- +|.-..++.-.|+.++..+++.+
T Consensus 376 -------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~-------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 376 -------FSGLLLLYSSTGDREKLSKLAKIAEERGD-------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred -------ccccHHHHHHhCCHHHHHHHHHHHHHccC-------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 57889999999999988888888777764 66666667777888888777654
No 256
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.78 E-value=45 Score=28.73 Aligned_cols=97 Identities=13% Similarity=0.132 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChH-HHHHHH
Q 021583 90 TVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMG---TYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPR-IFFDKM 165 (310)
Q Consensus 90 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~y~~l 165 (310)
.|+..+..| +.|++..|...|....+.. .-+.+ .+==|-..+...|+.++|..+|..+.+..-+.+-. ...--|
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 588777765 5677999999999988662 22222 23337899999999999999999998864332222 366677
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC
Q 021583 166 ISIYYNRGMHEKMFEIFADMEEL 188 (310)
Q Consensus 166 i~~~~~~g~~~~a~~l~~~m~~~ 188 (310)
-....+.|+.++|-..|++..+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 77888999999999999998874
No 257
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=77.78 E-value=0.61 Score=35.92 Aligned_cols=54 Identities=11% Similarity=0.161 Sum_probs=39.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 021583 94 ALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWT 147 (310)
Q Consensus 94 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~ 147 (310)
+|..|.+.+.+.....+++.+...+..-+...++.++..|++.++.++.+++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 456666677777777788887766666677888888888888877777777776
No 258
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=77.35 E-value=32 Score=26.76 Aligned_cols=102 Identities=7% Similarity=0.062 Sum_probs=74.3
Q ss_pred HHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCC-HHHHHH
Q 021583 73 YGALDSFIAWELEFPLI--TVKKALKTLENEKDWKRIIQVTKWMLSKG-----QGRTMGTYFLLLNALAEDGR-LDEAEE 144 (310)
Q Consensus 73 ~~~~~~m~~~~~~p~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g-----~~p~~~ty~~ll~~~~~~g~-~~~A~~ 144 (310)
.+.+.-|.+.+..++.. -.|.+++.....+++.....+++.+.--. -..+..+|.+++++.++..- ---+..
T Consensus 22 ~~~~~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~ 101 (145)
T PF13762_consen 22 NSHLPYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLT 101 (145)
T ss_pred HHHHHHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHH
Confidence 34444556667777654 47888988888899999888888874211 13466789999999977766 456788
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHHcCCH
Q 021583 145 LWTKIFLDHLEGTPRIFFDKMISIYYNRGMH 175 (310)
Q Consensus 145 ~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~ 175 (310)
+|.-|++.+. ..+..-|-.||.++.+....
T Consensus 102 Lf~~Lk~~~~-~~t~~dy~~li~~~l~g~~~ 131 (145)
T PF13762_consen 102 LFNFLKKNDI-EFTPSDYSCLIKAALRGYFH 131 (145)
T ss_pred HHHHHHHcCC-CCCHHHHHHHHHHHHcCCCC
Confidence 9999998777 36667899999997655333
No 259
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=76.56 E-value=52 Score=28.86 Aligned_cols=134 Identities=14% Similarity=0.079 Sum_probs=79.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCh
Q 021583 84 LEFPLITVKKALKTLENEKDWKRIIQVTKWMLS-KGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLD----HLEGTP 158 (310)
Q Consensus 84 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~----~~~~~~ 158 (310)
++.|..-+|.|+.- +..++++--+-.++..+ .|-.-....+..+-.-|++.++.+.+.+.+++..+. |.+ .+
T Consensus 77 ikfD~~~~n~l~kk--neeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~K-iD 153 (412)
T COG5187 77 IKFDRGRMNTLLKK--NEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLK-ID 153 (412)
T ss_pred eehhhHHHHHHHHh--hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccc-hh
Confidence 34445555555543 11223333233334332 234455678888999999999999999988776655 442 33
Q ss_pred HHHHHHHHHHH--HHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 021583 159 RIFFDKMISIY--YNRGMHEKMFEIFADMEELGVRPNV----SIVSMMGNAFQKLGMLDKYEKLKKKYPPP 223 (310)
Q Consensus 159 ~~~y~~li~~~--~~~g~~~~a~~l~~~m~~~g~~p~~----~ty~~li~~~~~~g~~~~a~~l~~~~~p~ 223 (310)
+.+..+=-|| ....-+++.++..+.|.++|..++. .+|.-+. +....++.+|-.++-.+.|+
T Consensus 154 -v~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 154 -VFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIF--KMMRRNFKEAAILLSDILPT 221 (412)
T ss_pred -hHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHH--HHHHHhhHHHHHHHHHHhcc
Confidence 2233322233 3344468888899999999988765 3333221 23345788888888665443
No 260
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=76.37 E-value=30 Score=28.48 Aligned_cols=79 Identities=18% Similarity=0.174 Sum_probs=55.1
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCC
Q 021583 133 LAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEEL---GVRPNVSIVSMMGNAFQKLGM 209 (310)
Q Consensus 133 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~---g~~p~~~ty~~li~~~~~~g~ 209 (310)
+.+.|+ ++|.+.|-++...+. .+...--.-+.+|-...+.+++..++....+. +-.+|+..+.+|.+.|-+.|+
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~--l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPE--LETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCC--CCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 334444 467777777777766 34444444455555578888888888877642 346788888999999999998
Q ss_pred HHHHH
Q 021583 210 LDKYE 214 (310)
Q Consensus 210 ~~~a~ 214 (310)
.+.|.
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 88874
No 261
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=76.20 E-value=24 Score=29.61 Aligned_cols=78 Identities=12% Similarity=0.157 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHH
Q 021583 90 TVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEG-TPRIFFDKMISI 168 (310)
Q Consensus 90 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~y~~li~~ 168 (310)
|.+..++.+.+.+++.+++...++-.+.+ .-|..+-..|++.||-.|++++|..=++-.-+..-.. +-...|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 45667788888999999988887765552 3455666778999999999999977666555443211 122366666654
No 262
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=76.13 E-value=15 Score=27.87 Aligned_cols=46 Identities=15% Similarity=0.284 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 021583 71 EVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLS 116 (310)
Q Consensus 71 ~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 116 (310)
++.+.+..+...++.|+.......+.+|.+.+++..|.++|+-.+.
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3456677778888899999899999999999999999999988773
No 263
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=76.12 E-value=9.5 Score=20.78 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 021583 125 TYFLLLNALAEDGRLDEAEELWTKIFL 151 (310)
Q Consensus 125 ty~~ll~~~~~~g~~~~A~~~~~~m~~ 151 (310)
+|..+-..|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344444555555555555555554443
No 264
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=75.61 E-value=59 Score=29.00 Aligned_cols=143 Identities=11% Similarity=0.082 Sum_probs=88.5
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC
Q 021583 81 AWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSK-GQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLD----HLE 155 (310)
Q Consensus 81 ~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~----~~~ 155 (310)
+..+..|..-++++..+ +...+++-.+..++..+. |-.--....-..-.-||+.||.+.|++.+++..+. |.+
T Consensus 63 ~~~i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~k 140 (393)
T KOG0687|consen 63 SLVIKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHK 140 (393)
T ss_pred hcceeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccc
Confidence 44666777777777665 233455555555554432 33333466667788999999999999998766554 442
Q ss_pred CChHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchh
Q 021583 156 GTPRIFFDKMISI-YYNRGMHEKMFEIFADMEELGVRPNV----SIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYR 228 (310)
Q Consensus 156 ~~~~~~y~~li~~-~~~~g~~~~a~~l~~~m~~~g~~p~~----~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~ 228 (310)
.|.+.|-+=+.- |....-+.+-.+..+.|.+.|..++. .+|.-+- |..-.++.+|-.+|-...|+-.+|.
T Consensus 141 -iDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vsTFtS~E 215 (393)
T KOG0687|consen 141 -IDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVSTFTSYE 215 (393)
T ss_pred -hhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHccccccee
Confidence 454433333332 23344456677777778888888775 3444432 3445689999999987666554444
No 265
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=75.55 E-value=30 Score=28.54 Aligned_cols=83 Identities=10% Similarity=0.017 Sum_probs=61.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CChHHHHHHHHHHHHHc
Q 021583 95 LKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLE--GTPRIFFDKMISIYYNR 172 (310)
Q Consensus 95 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~y~~li~~~~~~ 172 (310)
...+.+.|+ +.|.+.|-.+.+.+.--|..-.-.|...|. ..+.+++..++-+..+..-. .++...+.+|.+.|-+.
T Consensus 114 Yy~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~ 191 (203)
T PF11207_consen 114 YYHWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKL 191 (203)
T ss_pred HHHhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHh
Confidence 344556666 789999999998887666555555555554 78899999999887765331 25556899999999999
Q ss_pred CCHHHHH
Q 021583 173 GMHEKMF 179 (310)
Q Consensus 173 g~~~~a~ 179 (310)
|+.+.|.
T Consensus 192 ~~~e~AY 198 (203)
T PF11207_consen 192 KNYEQAY 198 (203)
T ss_pred cchhhhh
Confidence 9999885
No 266
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=75.47 E-value=5.7 Score=20.60 Aligned_cols=18 Identities=50% Similarity=0.578 Sum_probs=8.0
Q ss_pred HHHHHHhcCCHHHHHHHH
Q 021583 129 LLNALAEDGRLDEAEELW 146 (310)
Q Consensus 129 ll~~~~~~g~~~~A~~~~ 146 (310)
+-.++...|++++|+.++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 334444444444444443
No 267
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=75.27 E-value=50 Score=34.47 Aligned_cols=75 Identities=15% Similarity=0.059 Sum_probs=45.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHH--HHHHHHHHHHHcCCHH
Q 021583 99 ENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRI--FFDKMISIYYNRGMHE 176 (310)
Q Consensus 99 ~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~--~y~~li~~~~~~g~~~ 176 (310)
.+.+.+++|--.|+..-+. .--+.+|-.+|+|++|+.+..+|... .+.. +=-.|+.-+...+++-
T Consensus 950 ~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~----~de~~~~a~~L~s~L~e~~kh~ 1016 (1265)
T KOG1920|consen 950 REELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG----KDELVILAEELVSRLVEQRKHY 1016 (1265)
T ss_pred HHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC----HHHHHHHHHHHHHHHHHcccch
Confidence 3345555555555432221 34567777778888887777766543 2222 2356777777788877
Q ss_pred HHHHHHHHHH
Q 021583 177 KMFEIFADME 186 (310)
Q Consensus 177 ~a~~l~~~m~ 186 (310)
+|-++..+-.
T Consensus 1017 eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1017 EAAKILLEYL 1026 (1265)
T ss_pred hHHHHHHHHh
Confidence 7777766654
No 268
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=74.83 E-value=4.6 Score=22.61 Aligned_cols=20 Identities=20% Similarity=0.474 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHcCCHHHHH
Q 021583 160 IFFDKMISIYYNRGMHEKMF 179 (310)
Q Consensus 160 ~~y~~li~~~~~~g~~~~a~ 179 (310)
..|+.|-..|...|+.++|+
T Consensus 14 ~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 14 EAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHHHHHHHCcCHHhhc
Confidence 35555555555555555543
No 269
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=74.82 E-value=67 Score=30.07 Aligned_cols=116 Identities=9% Similarity=0.087 Sum_probs=51.7
Q ss_pred HhcCCHHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH--H
Q 021583 99 ENEKDWKRIIQVTKWMLSKG-QGRT----MGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYY--N 171 (310)
Q Consensus 99 ~~~~~~~~a~~~~~~m~~~g-~~p~----~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~--~ 171 (310)
-+++++.+|.++|...-+.- -.|. ..--+-+|++|... +++..+....++.+..-. ..|-.|..+.. +
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~----s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGK----SAYLPLFKALVAYK 91 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCC----chHHHHHHHHHHHH
Confidence 34556666666666554221 1111 11123345555442 344444444444443211 22333333322 4
Q ss_pred cCCHHHHHHHHHHHHHC--CCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 172 RGMHEKMFEIFADMEEL--GVRP------------NVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 172 ~g~~~~a~~l~~~m~~~--g~~p------------~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
.+++.+|.+.+....++ +-+| |..-=++.++++...|+++++..++++
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~ 153 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNR 153 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 55566666655555443 2221 111224455555666666666555554
No 270
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=74.38 E-value=26 Score=24.59 Aligned_cols=16 Identities=19% Similarity=0.266 Sum_probs=7.8
Q ss_pred HcCCHHHHHHHHHHHH
Q 021583 171 NRGMHEKMFEIFADME 186 (310)
Q Consensus 171 ~~g~~~~a~~l~~~m~ 186 (310)
..|+.+.|.+++..+.
T Consensus 48 ~~g~~~~ar~LL~~L~ 63 (88)
T cd08819 48 NHGNESGARELLKRIV 63 (88)
T ss_pred ccCcHHHHHHHHHHhc
Confidence 3444555555555544
No 271
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=73.99 E-value=1.1e+02 Score=31.17 Aligned_cols=199 Identities=11% Similarity=-0.004 Sum_probs=109.0
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--
Q 021583 58 LVTCIKGLSNVKEEVYGALDSFI----AWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLN-- 131 (310)
Q Consensus 58 ~~~~l~~~~~~~~~~~~~~~~m~----~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~-- 131 (310)
+...+..+.+.++.+..+-+... +.-..+....+..+..+..-.|++++|..+..+..+.--+.+++.|.....
T Consensus 463 L~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~ 542 (894)
T COG2909 463 LRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQ 542 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 33334455566666555544433 333344567788888888888999999999888776644555555544332
Q ss_pred ---HHHhcCC--HHHHHHHHHHHHhcCCCC-----ChHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHCCCCCCHHHH--H
Q 021583 132 ---ALAEDGR--LDEAEELWTKIFLDHLEG-----TPRIFFDKMISIYYNRGMH-EKMFEIFADMEELGVRPNVSIV--S 198 (310)
Q Consensus 132 ---~~~~~g~--~~~A~~~~~~m~~~~~~~-----~~~~~y~~li~~~~~~g~~-~~a~~l~~~m~~~g~~p~~~ty--~ 198 (310)
.+-..|+ ..+.+.-|.......... ....++..++.++.+...- .++..-++--......|-...+ .
T Consensus 543 ~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~ 622 (894)
T COG2909 543 QSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALS 622 (894)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHH
Confidence 2445563 334445555444432221 2224677777777762211 2222222222222222322333 4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCcccCChhhhhHhhhc----cCCChhhHHhhhch
Q 021583 199 MMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSA----TEGKTNEVETTKNP 262 (310)
Q Consensus 199 ~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~----~~g~~~~a~~~~~~ 262 (310)
.|...+...|++|+|...++++. ..+...+.+++...--.++.. ..|+...+.....+
T Consensus 623 ~LA~l~~~~Gdl~~A~~~l~~~~------~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 623 MLAELEFLRGDLDKALAQLDELE------RLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHH------HHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 78888999999999988876632 122222233443333333333 78888877776644
No 272
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=73.91 E-value=51 Score=31.24 Aligned_cols=98 Identities=9% Similarity=-0.004 Sum_probs=72.5
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTM-GTYFLLLNALAEDGRLDEAEEL 145 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~ty~~ll~~~~~~g~~~~A~~~ 145 (310)
+..+.+...|-+-.... ++|.+-|..=..+|.+.|++++|.+=-.+-. .+.|++ -.|+-+-.+..--|++++|..-
T Consensus 16 ~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~--~l~p~w~kgy~r~Gaa~~~lg~~~eA~~a 92 (539)
T KOG0548|consen 16 GDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTR--RLNPDWAKGYSRKGAALFGLGDYEEAILA 92 (539)
T ss_pred ccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHH--hcCCchhhHHHHhHHHHHhcccHHHHHHH
Confidence 44566677777766665 4578889999999999999998876554433 456885 6888888888888999999999
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHH
Q 021583 146 WTKIFLDHLEGTPRIFFDKMISIY 169 (310)
Q Consensus 146 ~~~m~~~~~~~~~~~~y~~li~~~ 169 (310)
|.+=.+.. +.+...++-|..++
T Consensus 93 y~~GL~~d--~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 93 YSEGLEKD--PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHhhcC--CchHHHHHhHHHhh
Confidence 98755543 34445677777776
No 273
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=73.61 E-value=57 Score=33.59 Aligned_cols=142 Identities=11% Similarity=0.051 Sum_probs=89.6
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 021583 72 VYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKG-QGRTMGTYFLLLNALAEDGRLDEAEELWTKIF 150 (310)
Q Consensus 72 ~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~ 150 (310)
|.+.|++..+.+ ..+..+...+...|++..+++.|..+.-.--+.. ...-...|--.--.|-+.++..+|..-|+.-.
T Consensus 511 A~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsAL 589 (1238)
T KOG1127|consen 511 AKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSAL 589 (1238)
T ss_pred HHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHh
Confidence 455555544443 3457788899999999999999998832221111 00011112223334567788888888888777
Q ss_pred hcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHh
Q 021583 151 LDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNA--FQKLGMLDKYEKLKKK 219 (310)
Q Consensus 151 ~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~--~~~~g~~~~a~~l~~~ 219 (310)
+.. |.+...|-.+..+|..+|++..|.++|...-. +.|+.. |.-.-.+ -+..|...+|...+..
T Consensus 590 R~d--PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s~-y~~fk~A~~ecd~GkYkeald~l~~ 655 (1238)
T KOG1127|consen 590 RTD--PKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLSK-YGRFKEAVMECDNGKYKEALDALGL 655 (1238)
T ss_pred cCC--chhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHhH-HHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 664 35556899999999999999999999987544 456542 2221111 3445666666665543
No 274
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.00 E-value=49 Score=26.81 Aligned_cols=133 Identities=17% Similarity=0.087 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHH--HHH
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTM-GTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIF--FDK 164 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~--y~~ 164 (310)
...|...+.. .+.+..++|+.-|..+.+.|..-=. -.---.-......|+.+.|...|++.-...- .|... ---
T Consensus 59 gd~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~--~P~~~rd~AR 135 (221)
T COG4649 59 GDAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS--IPQIGRDLAR 135 (221)
T ss_pred hHHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC--CcchhhHHHH
Confidence 3456555543 5567789999999999987764211 1112233445678999999999999877654 33332 222
Q ss_pred HHHH--HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 021583 165 MISI--YYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPP 223 (310)
Q Consensus 165 li~~--~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~ 223 (310)
|=.+ +...|.++......+-+-..|-+.-...=..|--+-.+.|++.+|.++|..+-.+
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 3333 3467888888887777765554334444556666677899999999999875433
No 275
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=72.88 E-value=78 Score=29.11 Aligned_cols=148 Identities=11% Similarity=-0.001 Sum_probs=75.4
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGR-TMGTYFLLLNALAEDGRLDEAEEL 145 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~g~~~~A~~~ 145 (310)
+..+.+.+-|+.|.+.- +.-..-...|+-.--+.|..+.|.+.-+.--.. .| -.......|...|..|+|+.|+++
T Consensus 134 G~~~~Ar~kfeAMl~dP-EtRllGLRgLyleAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkL 210 (531)
T COG3898 134 GDYEDARKKFEAMLDDP-ETRLLGLRGLYLEAQRLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKL 210 (531)
T ss_pred CchHHHHHHHHHHhcCh-HHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHH
Confidence 44444455555554321 000112223333334455555555555443322 23 246667778888888888888888
Q ss_pred HHHHHhcCCCCChHH--HHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 146 WTKIFLDHLEGTPRI--FFDKMISIYYN---RGMHEKMFEIFADMEELGVRPNV-SIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 146 ~~~m~~~~~~~~~~~--~y~~li~~~~~---~g~~~~a~~l~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
.+.-++..+...+.. .--.|+.+-.. .-+...|...-. ......||. ..-..-..+|.+.|++.++-.+++.
T Consensus 211 vd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~--~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~ 288 (531)
T COG3898 211 VDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDAL--EANKLAPDLVPAAVVAARALFRDGNLRKGSKILET 288 (531)
T ss_pred HHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHH--HHhhcCCccchHHHHHHHHHHhccchhhhhhHHHH
Confidence 877666655333322 33344433221 112223333222 233456664 3334455678888888888777764
No 276
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=72.18 E-value=67 Score=28.09 Aligned_cols=137 Identities=12% Similarity=0.058 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhc-CCCCChHHHHHHHHHHHHHcCCHHHHH
Q 021583 104 WKRIIQVTKWMLS-KGQGRTMGTYFLLLNALAEDGR--LDEAEELWTKIFLD-HLEGTPRIFFDKMISIYYNRGMHEKMF 179 (310)
Q Consensus 104 ~~~a~~~~~~m~~-~g~~p~~~ty~~ll~~~~~~g~--~~~A~~~~~~m~~~-~~~~~~~~~y~~li~~~~~~g~~~~a~ 179 (310)
.-+|+.+|+...- ..+-.|..+...|++......+ ..---++.+-+... +- .++..+--.+|..++..+++.+.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~-~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSK-SLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhcccc-CCChhHHHHHHHHHHhcccHHHHH
Confidence 4455555553221 2356788888889988887322 22223333333333 22 355567889999999999999999
Q ss_pred HHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCcccCChhhhhHhh
Q 021583 180 EIFADMEEL-GVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELD 246 (310)
Q Consensus 180 ~l~~~m~~~-g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li 246 (310)
+++..-... +..-|...|..+|+.-...|+..-..++.++-. .-.+++.++.++......|-
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~Gh-----LLwikR~~V~v~~~L~~~L~ 285 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGH-----LLWIKRNNVDVTDELRSQLS 285 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCC-----eEEeeecCCcCCHHHHHHHH
Confidence 999887654 555688999999999999999999888875421 33566777777766665443
No 277
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=71.93 E-value=49 Score=26.41 Aligned_cols=130 Identities=8% Similarity=0.027 Sum_probs=87.8
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 021583 72 VYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFL 151 (310)
Q Consensus 72 ~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~ 151 (310)
..+.+..+.+.+++|+...+..++..+.+.|++.... .+...++-+|.......+-.+... ...+.++=-+|..
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~~--~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGNQ--YPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHcc--ChHHHHHHHHHHH
Confidence 3566777788999999999999999999999876544 445667778877777666444432 2334444434443
Q ss_pred c-CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 152 D-HLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLK 217 (310)
Q Consensus 152 ~-~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~ 217 (310)
+ + ..+..++..+...|++-+|.++.+..... +......++.+-.+.++...-..+|
T Consensus 87 RL~------~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~ 143 (167)
T PF07035_consen 87 RLG------TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVF 143 (167)
T ss_pred Hhh------hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHH
Confidence 3 2 24788889999999999999998875322 1222355667666666665544443
No 278
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.99 E-value=55 Score=31.72 Aligned_cols=101 Identities=13% Similarity=0.044 Sum_probs=76.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHH
Q 021583 97 TLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHE 176 (310)
Q Consensus 97 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~ 176 (310)
...+.|+++.|.++..+.. +..-|..|-++..+.|++..|.+.|.+-.. |..|+-.|...|+.+
T Consensus 646 lal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~ 709 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD----------LGSLLLLYTSSGNAE 709 (794)
T ss_pred hhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChh
Confidence 3446777888877766532 457788999999999999999999876443 666777788888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 177 KMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 177 ~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
....+-..-++.|.- |...-+|...|+++++.+++.+
T Consensus 710 ~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 710 GLAVLASLAKKQGKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 888887777777653 5555678889999999888754
No 279
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.87 E-value=67 Score=27.54 Aligned_cols=93 Identities=11% Similarity=-0.000 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCcc
Q 021583 161 FFDKMISIYYNRGMHEKMFEIFADMEEL----GVRPNV-SIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRV 235 (310)
Q Consensus 161 ~y~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p~~-~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~ 235 (310)
-|..+-+.+++..++++|-..+..-... .-.++. ..|...|-.|.-..++..|++.++.+. .+-...-
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~-------qip~f~~ 224 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCS-------QIPAFLK 224 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchh-------cCccccC
Confidence 4666667777877877776554442211 112332 446677777777889999999987631 1111222
Q ss_pred cCChhhhhHhhhc-cCCChhhHHhhh
Q 021583 236 RIPAKPKYELDSA-TEGKTNEVETTK 260 (310)
Q Consensus 236 ~~~~~~~~~li~~-~~g~~~~a~~~~ 260 (310)
.-+..+...|+.+ ..|+.+++.+++
T Consensus 225 sed~r~lenLL~ayd~gD~E~~~kvl 250 (308)
T KOG1585|consen 225 SEDSRSLENLLTAYDEGDIEEIKKVL 250 (308)
T ss_pred hHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 5567788889999 999999887765
No 280
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=70.22 E-value=75 Score=31.49 Aligned_cols=26 Identities=19% Similarity=0.392 Sum_probs=16.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 021583 193 NVSIVSMMGNAFQKLGMLDKYEKLKK 218 (310)
Q Consensus 193 ~~~ty~~li~~~~~~g~~~~a~~l~~ 218 (310)
|....-.|...+.+.|+-++|-+.|-
T Consensus 851 ~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 851 DSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHH
Confidence 34445556666777777777766653
No 281
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=70.14 E-value=33 Score=25.15 Aligned_cols=26 Identities=19% Similarity=0.768 Sum_probs=23.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 021583 162 FDKMISIYYNRGMHEKMFEIFADMEE 187 (310)
Q Consensus 162 y~~li~~~~~~g~~~~a~~l~~~m~~ 187 (310)
|..|+.-|-..|.+++|.+++.....
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 88899999999999999999888876
No 282
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=69.99 E-value=49 Score=27.83 Aligned_cols=63 Identities=10% Similarity=0.071 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHH
Q 021583 69 KEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLS--KGQGRTMGTYFLLLNA 132 (310)
Q Consensus 69 ~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~g~~p~~~ty~~ll~~ 132 (310)
.+++.....+-.+.+ +-|...-..++..||-.|++++|..=++-.-. ....+-...|..+|..
T Consensus 17 L~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 17 LQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 444444444433333 33555667778888888888888766655432 2344556667666654
No 283
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=68.85 E-value=18 Score=35.17 Aligned_cols=94 Identities=17% Similarity=0.275 Sum_probs=61.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHH---------HHHHHhcCCCCChHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHC
Q 021583 120 GRTMGTYFLLLNALAEDGRLDEAEEL---------WTKIFLDHLEGTPRIFFDKMISIYYNRGMHE--KMFEIFADMEEL 188 (310)
Q Consensus 120 ~p~~~ty~~ll~~~~~~g~~~~A~~~---------~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~--~a~~l~~~m~~~ 188 (310)
.+..+.|.+=+.-|...|.+++|.++ |+.+-...+ ....+++-=.+|.+..+.. +..-=+++|++.
T Consensus 553 ~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~AL---eAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~r 629 (1081)
T KOG1538|consen 553 SAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEAL---EALDFETARKAYIRVRDLRYLELISELEERKKR 629 (1081)
T ss_pred ecccccccccchhhhhccchhhhhcccccceecchHHHHHHHHH---hhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhc
Confidence 44445555556666677777776555 444444433 2234666677777766543 344446778888
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 189 GVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 189 g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
|..|+... +...|+-.|.+.+|.++|.+
T Consensus 630 ge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 630 GETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred CCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 99898753 44567888999999999877
No 284
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=68.71 E-value=43 Score=24.40 Aligned_cols=77 Identities=8% Similarity=-0.087 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 021583 90 TVKKALKTLENEKD--WKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMIS 167 (310)
Q Consensus 90 ~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~ 167 (310)
.|++--..|....+ .-+..+-++.+....+.|+.....+.|++|-+-+++..|.++|+-.+.+-- .....|..++.
T Consensus 10 eF~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 10 EFDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 34444444444333 334666667777778889999999999999999999999999988887643 11226766665
Q ss_pred H
Q 021583 168 I 168 (310)
Q Consensus 168 ~ 168 (310)
-
T Consensus 88 E 88 (108)
T PF02284_consen 88 E 88 (108)
T ss_dssp H
T ss_pred H
Confidence 3
No 285
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=68.56 E-value=24 Score=21.53 Aligned_cols=32 Identities=13% Similarity=0.325 Sum_probs=17.9
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 021583 171 NRGMHEKMFEIFADMEELGVRPNVSIVSMMGN 202 (310)
Q Consensus 171 ~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~ 202 (310)
+.|..+++..++++|.+.|+..+...|..+++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 45555556666666666665555555554443
No 286
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=68.55 E-value=44 Score=24.54 Aligned_cols=82 Identities=16% Similarity=0.070 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCcccCChhhhhHhhhccCCC
Q 021583 173 GMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSATEGK 252 (310)
Q Consensus 173 g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~g~ 252 (310)
..+++|..+.+-+...+.. ....--+-+..+.+.|++++|+..=.. ...||...|-+|-+.+.|.
T Consensus 20 HcH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~ALl~~~~--------------~~~pdL~p~~AL~a~klGL 84 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEALLLPQC--------------HCYPDLEPWAALCAWKLGL 84 (116)
T ss_dssp T-HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHHHHHHTT--------------S--GGGHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHHHHhccc--------------CCCccHHHHHHHHHHhhcc
Confidence 3467788887777776542 223333444557788888888333111 1157777887777778888
Q ss_pred hhhHHhhhchhhcCCCC
Q 021583 253 TNEVETTKNPNESSEEP 269 (310)
Q Consensus 253 ~~~a~~~~~~m~~~~~~ 269 (310)
-+.++..+.++-.+|-+
T Consensus 85 ~~~~e~~l~rla~~g~~ 101 (116)
T PF09477_consen 85 ASALESRLTRLASSGSP 101 (116)
T ss_dssp HHHHHHHHHHHCT-SSH
T ss_pred HHHHHHHHHHHHhCCCH
Confidence 88888888887666643
No 287
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=68.08 E-value=80 Score=27.34 Aligned_cols=102 Identities=10% Similarity=0.065 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHhcCCHH---HHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHH
Q 021583 89 ITVKKALKTLENEKDWK---RIIQVTKWML-SKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDK 164 (310)
Q Consensus 89 ~~~~~li~~~~~~~~~~---~a~~~~~~m~-~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~ 164 (310)
.++..++.+|...+..+ +|..+.+.+. +.|-+ ...|-.-|+.+.+.++.+++.+++.+|...-. .+...|..
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~--~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~--~~e~~~~~ 160 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNK--PEVFLLKLEILLKSFDEEEYEEILMRMIRSVD--HSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCC--cHHHHHHHHHHhccCChhHHHHHHHHHHHhcc--cccchHHH
Confidence 46778888888877655 4666666665 33333 34555556666679999999999999998633 34467887
Q ss_pred HHHHHHH--cCCHHHHHHHHHHHHHCCCCCCH
Q 021583 165 MISIYYN--RGMHEKMFEIFADMEELGVRPNV 194 (310)
Q Consensus 165 li~~~~~--~g~~~~a~~l~~~m~~~g~~p~~ 194 (310)
+++.+-. ......+...+..+....+.|..
T Consensus 161 ~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 161 ILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 7777733 23345566667666655555554
No 288
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=67.16 E-value=25 Score=22.80 Aligned_cols=45 Identities=20% Similarity=0.166 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 021583 139 LDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADME 186 (310)
Q Consensus 139 ~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~ 186 (310)
+++..++.+.++..- .+-...-.+|.||...|++++|.+.++++.
T Consensus 6 ~~~~~~~~~~lR~~R---HD~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 6 LEELEELIDSLRAQR---HDFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445555555554431 122345556677777777777777666654
No 289
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=66.99 E-value=68 Score=30.26 Aligned_cols=110 Identities=12% Similarity=0.064 Sum_probs=74.3
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 021583 73 YGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLD 152 (310)
Q Consensus 73 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~ 152 (310)
.++++.++...--|+.+..-+.| +...|.++.+...+....+. +..+..+-.+++....+-|++++|..+-.-|...
T Consensus 310 ~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~ 386 (831)
T PRK15180 310 QQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSN 386 (831)
T ss_pred HHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhcc
Confidence 45556666553356655444444 34678999999888876644 4556678889999999999999999999999988
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 021583 153 HLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEE 187 (310)
Q Consensus 153 ~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~ 187 (310)
.++ .+.+ ...-...--..|-+|++...|+++..
T Consensus 387 eie-~~ei-~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 387 EIE-DEEV-LTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred ccC-Chhh-eeeecccHHHHhHHHHHHHHHHHHhc
Confidence 885 3333 11111222345667777777777643
No 290
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=66.46 E-value=18 Score=19.36 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=11.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 021583 127 FLLLNALAEDGRLDEAEELWTKIF 150 (310)
Q Consensus 127 ~~ll~~~~~~g~~~~A~~~~~~m~ 150 (310)
..+-..|...|++++|.+.|++..
T Consensus 5 ~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 5 YYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 334444445555555555554444
No 291
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=66.34 E-value=19 Score=19.45 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 021583 125 TYFLLLNALAEDGRLDEAEELWTKIFL 151 (310)
Q Consensus 125 ty~~ll~~~~~~g~~~~A~~~~~~m~~ 151 (310)
+|..+-..|...|+.++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344455555566666666666655443
No 292
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=66.30 E-value=13 Score=22.36 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=18.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCC
Q 021583 165 MISIYYNRGMHEKMFEIFADMEELG 189 (310)
Q Consensus 165 li~~~~~~g~~~~a~~l~~~m~~~g 189 (310)
|-.+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5567777888888888887777543
No 293
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=66.23 E-value=53 Score=28.89 Aligned_cols=56 Identities=13% Similarity=0.062 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 161 FFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLK 217 (310)
Q Consensus 161 ~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~ 217 (310)
+.+..-.+|..+|.+.+|.++.+....-. +.+...|-.|+..|...|+--.|.+.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khy 336 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHY 336 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHH
Confidence 44555556666666666666666655432 224555666666666666644444444
No 294
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=65.61 E-value=61 Score=25.09 Aligned_cols=72 Identities=11% Similarity=0.025 Sum_probs=50.8
Q ss_pred cHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 021583 68 VKEEVYGALDSFIAW--ELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRL 139 (310)
Q Consensus 68 ~~~~~~~~~~~m~~~--~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~ 139 (310)
..+.|...|+.+..+ .-+-...+--.|+.+|.+.++++.|...++...+..=..--.-|.-.+.|++.-...
T Consensus 25 ~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~ 98 (142)
T PF13512_consen 25 NYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQD 98 (142)
T ss_pred CHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHh
Confidence 344457777777654 213345667789999999999999999999988664333347777788887764443
No 295
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=65.56 E-value=87 Score=26.84 Aligned_cols=149 Identities=12% Similarity=0.113 Sum_probs=98.0
Q ss_pred CcHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhc-------
Q 021583 67 NVKEEVYGALDSFIAW--ELEFPLITVKKALKTLENEKDWKRIIQVTKWML-SKGQGRTMGTYFLLLNALAED------- 136 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~--~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~-~~g~~p~~~ty~~ll~~~~~~------- 136 (310)
+..+.|.+.|+.+.++ +-+....+--.++.++.+.++++.|...+++.. ..+-.|| ..|-..|.+++.-
T Consensus 48 gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~~~~i~~~~ 126 (254)
T COG4105 48 GNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSYFFQIDDVT 126 (254)
T ss_pred CCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhccCCccc
Confidence 4556668888888765 334456677788889999999999999999976 5555555 4555556555533
Q ss_pred CCH---HHHHHHHHHHHhcC--CCC-ChHHH-----------HH-HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----
Q 021583 137 GRL---DEAEELWTKIFLDH--LEG-TPRIF-----------FD-KMISIYYNRGMHEKMFEIFADMEELGVRPNV---- 194 (310)
Q Consensus 137 g~~---~~A~~~~~~m~~~~--~~~-~~~~~-----------y~-~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~---- 194 (310)
.|. .+|..-|+++.++= .+- ++... ++ .+-+.|.+.|.+..|..-+++|.+. -|+.
T Consensus 127 rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~--y~~t~~~~ 204 (254)
T COG4105 127 RDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLEN--YPDTSAVR 204 (254)
T ss_pred cCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc--cccccchH
Confidence 222 34445555555441 000 11100 11 2445778999999999999999987 2332
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Q 021583 195 SIVSMMGNAFQKLGMLDKYEKLKK 218 (310)
Q Consensus 195 ~ty~~li~~~~~~g~~~~a~~l~~ 218 (310)
...-.|..+|-..|..++|.+.-+
T Consensus 205 eaL~~l~eaY~~lgl~~~a~~~~~ 228 (254)
T COG4105 205 EALARLEEAYYALGLTDEAKKTAK 228 (254)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHH
Confidence 456677888999999999877643
No 296
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=65.50 E-value=29 Score=28.19 Aligned_cols=49 Identities=16% Similarity=0.089 Sum_probs=30.8
Q ss_pred HcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 171 NRGMHEKMFEIFADMEE-LGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 171 ~~g~~~~a~~l~~~m~~-~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
..++.+......+-.++ ....|+..+|..++.++...|+.++|.++.++
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~ 169 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLAR 169 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44444444444444432 24567777777777777777777777777655
No 297
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=65.05 E-value=96 Score=27.11 Aligned_cols=90 Identities=9% Similarity=0.068 Sum_probs=50.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Q 021583 92 KKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYN 171 (310)
Q Consensus 92 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~ 171 (310)
..=|.+++..+++.++....-+.-+.--+.-.......|-.|.|.|++..+.++-..-.+..- .-....|.++..-|..
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~-Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPS-NQSLPEYGTVAELYLL 165 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcc-cCCchhhHHHHHHHHH
Confidence 344777777777777654443333222222233444445567777777777777666555422 1222357766665543
Q ss_pred -----cCCHHHHHHHH
Q 021583 172 -----RGMHEKMFEIF 182 (310)
Q Consensus 172 -----~g~~~~a~~l~ 182 (310)
.|.+++|+++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 67777777766
No 298
>PHA02875 ankyrin repeat protein; Provisional
Probab=64.97 E-value=1.1e+02 Score=27.91 Aligned_cols=137 Identities=12% Similarity=0.010 Sum_probs=70.6
Q ss_pred HHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHH
Q 021583 73 YGALDSFIAWELEFPLIT--VKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMG--TYFLLLNALAEDGRLDEAEELWTK 148 (310)
Q Consensus 73 ~~~~~~m~~~~~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--ty~~ll~~~~~~g~~~~A~~~~~~ 148 (310)
.++++.+.+.|..|+... ..+.+...++.|+.+ +.+.+.+.|..|+.. ...+.+...+..|+.+.+..+++.
T Consensus 15 ~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~ 90 (413)
T PHA02875 15 LDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDL 90 (413)
T ss_pred HHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHc
Confidence 355566667777766432 234445556667764 344445566655532 123456667778888776665543
Q ss_pred HHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHh
Q 021583 149 IFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSI--VSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 149 m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t--y~~li~~~~~~g~~~~a~~l~~~ 219 (310)
-....- ..+...+ +.+...+..|+.+ +.+.+.+.|..|+... -.+.+...+..|+.+-+..+++.
T Consensus 91 ~~~~~~-~~~~~g~-tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ 157 (413)
T PHA02875 91 GKFADD-VFYKDGM-TPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDH 157 (413)
T ss_pred CCcccc-cccCCCC-CHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 111000 0000112 2333345566654 4444455666665421 12344555677888777766653
No 299
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=64.83 E-value=1e+02 Score=27.62 Aligned_cols=85 Identities=19% Similarity=0.258 Sum_probs=45.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCC--CCChHH--HHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCH-HHH
Q 021583 128 LLLNALAEDGRLDEAEELWTKIFLDHL--EGTPRI--FFDKMISIYYNRGMHEKMFEIFADMEE-----LGVRPNV-SIV 197 (310)
Q Consensus 128 ~ll~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~--~y~~li~~~~~~g~~~~a~~l~~~m~~-----~g~~p~~-~ty 197 (310)
.++...-+.++.++|+++++++.+.-. +.++.+ .-..+...+...|+.+++.+++.+.+. -|++|++ ..|
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~f 159 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSF 159 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhH
Confidence 344455555677777777776665421 112333 334445555567777777777777665 5666654 334
Q ss_pred HHHHHHHH-hcCCHHH
Q 021583 198 SMMGNAFQ-KLGMLDK 212 (310)
Q Consensus 198 ~~li~~~~-~~g~~~~ 212 (310)
..+-+-|- +.|++..
T Consensus 160 Y~lssqYyk~~~d~a~ 175 (380)
T KOG2908|consen 160 YSLSSQYYKKIGDFAS 175 (380)
T ss_pred HHHHHHHHHHHHhHHH
Confidence 44444333 2344443
No 300
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=64.79 E-value=21 Score=19.33 Aligned_cols=29 Identities=7% Similarity=-0.036 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 021583 89 ITVKKALKTLENEKDWKRIIQVTKWMLSK 117 (310)
Q Consensus 89 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 117 (310)
.+|..+-..|...|++++|.+.|+...+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46788899999999999999999987754
No 301
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=64.69 E-value=20 Score=23.28 Aligned_cols=46 Identities=11% Similarity=0.177 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 021583 104 WKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFL 151 (310)
Q Consensus 104 ~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~ 151 (310)
++...++++.++.. +.|-.-.-..|.||...|++++|.++.+++.+
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33444444444322 22333334456666666666666666665554
No 302
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=64.45 E-value=92 Score=26.71 Aligned_cols=81 Identities=11% Similarity=0.024 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHH
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGR---TMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDK 164 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~ 164 (310)
..-|+..+.. .+.|++++|.+.|+.+... +.- ...+--.++.++.+.++.++|+..+++..+..-. .+.+-|-.
T Consensus 35 ~~LY~~g~~~-L~~gn~~~A~~~fe~l~~~-~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~-~~n~dY~~ 111 (254)
T COG4105 35 SELYNEGLTE-LQKGNYEEAIKYFEALDSR-HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPT-HPNADYAY 111 (254)
T ss_pred HHHHHHHHHH-HhcCCHHHHHHHHHHHHHc-CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC-CCChhHHH
Confidence 4456665555 4678999999999999844 222 3455556677888999999999999999887653 33456777
Q ss_pred HHHHHHH
Q 021583 165 MISIYYN 171 (310)
Q Consensus 165 li~~~~~ 171 (310)
.|.+++.
T Consensus 112 YlkgLs~ 118 (254)
T COG4105 112 YLKGLSY 118 (254)
T ss_pred HHHHHHH
Confidence 7777764
No 303
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=64.18 E-value=1e+02 Score=27.01 Aligned_cols=90 Identities=17% Similarity=0.163 Sum_probs=63.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---
Q 021583 128 LLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAF--- 204 (310)
Q Consensus 128 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~--- 204 (310)
.=|.+++.-++|.+++...-+--+.--+ .|.-.-..-|--|.+.+....+.++-......----+...|.++..-|
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEk-lPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEK-LPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCccc-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 3499999999999998776544333221 344457777788999999999999999987642122234466666555
Q ss_pred --HhcCCHHHHHHHHH
Q 021583 205 --QKLGMLDKYEKLKK 218 (310)
Q Consensus 205 --~~~g~~~~a~~l~~ 218 (310)
.-.|.+++|+.+..
T Consensus 167 VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVV 182 (309)
T ss_pred HHhccccHHHHHHHHh
Confidence 45799999999973
No 304
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.91 E-value=1.2e+02 Score=27.41 Aligned_cols=143 Identities=12% Similarity=-0.010 Sum_probs=90.7
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHH
Q 021583 74 GALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSK-GQGRTMGTY--FLLLNALAEDGRLDEAEELWTKIF 150 (310)
Q Consensus 74 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~ty--~~ll~~~~~~g~~~~A~~~~~~m~ 150 (310)
..++++.+ ..+.|..+++-.=.+|.-.|+.+.....++.+.-. +-....++| ..+--++..+|-+++|++.-++-.
T Consensus 124 ~~wdklL~-d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ral 202 (491)
T KOG2610|consen 124 IEWDKLLD-DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRAL 202 (491)
T ss_pred HHHHHHHH-hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhc
Confidence 33444433 33556777777777888888888888888887733 322223444 334445557899999999888877
Q ss_pred hcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 151 LDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEE---LGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 151 ~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~---~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
+.+- .+.-.-.++-..+--.|++.++.++...=.. .+-..-.+.|-...-.+...+.++.|+.+|++
T Consensus 203 qiN~--~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 203 QINR--FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred cCCC--cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 6543 4444566666667778889888887655322 11111223444444456677899999999864
No 305
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=62.72 E-value=20 Score=21.56 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=10.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 021583 130 LNALAEDGRLDEAEELWTKIFL 151 (310)
Q Consensus 130 l~~~~~~g~~~~A~~~~~~m~~ 151 (310)
-.+|...|+.+.|.+++++...
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3444444444444444444443
No 306
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=62.54 E-value=30 Score=23.78 Aligned_cols=47 Identities=6% Similarity=0.080 Sum_probs=38.0
Q ss_pred HcCCHHHHHHHHHHHHHCCCCC-CH-HHHHHHHHHHHhcCCHHHHHHHH
Q 021583 171 NRGMHEKMFEIFADMEELGVRP-NV-SIVSMMGNAFQKLGMLDKYEKLK 217 (310)
Q Consensus 171 ~~g~~~~a~~l~~~m~~~g~~p-~~-~ty~~li~~~~~~g~~~~a~~l~ 217 (310)
...+.++|+..|....+.-..| +. .++..|+.+|+..|++.+++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778889999999887664443 33 78899999999999999987763
No 307
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=62.43 E-value=58 Score=23.70 Aligned_cols=86 Identities=14% Similarity=0.219 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHH
Q 021583 103 DWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIF 182 (310)
Q Consensus 103 ~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~ 182 (310)
+.++|..+-+++...+-. ...+--+-+..+...|++++|..+.+.+ . .|+...|-+|-. .+.|..+++..-+
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~-~pdlepw~ALce--~rlGl~s~l~~rl 91 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----C-YPDLEPWLALCE--WRLGLGSALESRL 91 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----C-CchHHHHHHHHH--HhhccHHHHHHHH
Confidence 467788888887766432 2222233356677889999998887765 2 366667776654 3678888888888
Q ss_pred HHHHHCCCCCCHHHH
Q 021583 183 ADMEELGVRPNVSIV 197 (310)
Q Consensus 183 ~~m~~~g~~p~~~ty 197 (310)
.+|..+|- |....|
T Consensus 92 ~rla~sg~-p~lq~F 105 (115)
T TIGR02508 92 NRLAASGD-PRLQTF 105 (115)
T ss_pred HHHHhCCC-HHHHHH
Confidence 88877763 444444
No 308
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.96 E-value=85 Score=25.47 Aligned_cols=137 Identities=12% Similarity=0.135 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHH
Q 021583 123 MGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVS-IVSMMG 201 (310)
Q Consensus 123 ~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~-ty~~li 201 (310)
..+|..-|+ +++.+..++|+.-|.++.+.|...-|...---+-......|+...|...|.+.-...-.|-.. -..-|=
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 345555444 356788999999999999998865555444455556678999999999999987654445432 222222
Q ss_pred HH--HHhcCCHHHHHHHHHhCCCCccchheeccCcccCChhhhhHhhhc--cCCChhhHHhhhchhhcCCCCC
Q 021583 202 NA--FQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSA--TEGKTNEVETTKNPNESSEEPE 270 (310)
Q Consensus 202 ~~--~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~--~~g~~~~a~~~~~~m~~~~~~p 270 (310)
.+ +...|-++.+....+.+.-+..++. ...-.+|--+ +.|++..|..+|..+......|
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR----------~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMR----------HSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhH----------HHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 22 4456777776665544333322222 2333444444 9999999999998775544333
No 309
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=61.82 E-value=16 Score=19.40 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=10.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 021583 131 NALAEDGRLDEAEELWTKIFL 151 (310)
Q Consensus 131 ~~~~~~g~~~~A~~~~~~m~~ 151 (310)
..+.+.|+.++|.+.|+++.+
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHH
Confidence 334444555555555555544
No 310
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=60.83 E-value=79 Score=24.75 Aligned_cols=90 Identities=9% Similarity=0.028 Sum_probs=56.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHH
Q 021583 99 ENEKDWKRIIQVTKWMLSKGQGRTMGTYFLL-LNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEK 177 (310)
Q Consensus 99 ~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~l-l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~ 177 (310)
....+++++..+++.|.-- .|+......+ .-.+...|++++|.++|+++.+.+.. ..|..-+.++|-.-.-|-
T Consensus 21 L~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~----~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGA----PPYGKALLALCLNAKGDA 94 (153)
T ss_pred HhcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCC----chHHHHHHHHHHHhcCCh
Confidence 3478899999999888744 4544333332 34456889999999999998887641 246666666665555444
Q ss_pred HHHHHH-HHHHCCCCCCH
Q 021583 178 MFEIFA-DMEELGVRPNV 194 (310)
Q Consensus 178 a~~l~~-~m~~~g~~p~~ 194 (310)
.++.+. ++.+.+-.|+.
T Consensus 95 ~Wr~~A~~~le~~~~~~a 112 (153)
T TIGR02561 95 EWHVHADEVLARDADADA 112 (153)
T ss_pred HHHHHHHHHHHhCCCHhH
Confidence 544432 23344444444
No 311
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=60.82 E-value=82 Score=24.94 Aligned_cols=69 Identities=19% Similarity=0.198 Sum_probs=45.1
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 021583 133 LAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQ 205 (310)
Q Consensus 133 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 205 (310)
-.+.++.++++.+++.|.-..=..+...++..++ +.+.|++++|..+|+++.+.. |.......|+..|.
T Consensus 20 al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL 88 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEERA--PGFPYAKALLALCL 88 (160)
T ss_pred HHccCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHH
Confidence 3466789999999998886643212122555555 467899999999999987643 44443445554444
No 312
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=59.71 E-value=96 Score=25.35 Aligned_cols=77 Identities=10% Similarity=0.105 Sum_probs=50.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Q 021583 94 ALKTLENEKDWKRIIQVTKWMLSKG--QGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYN 171 (310)
Q Consensus 94 li~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~ 171 (310)
.-..+.+.|++++|.+.|+.+...- -.--....-.+..++.+.|+.++|...+++..+..=. .+.+-+-..+.|.+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~-~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN-SPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT--TTHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CcchhhHHHHHHHHH
Confidence 3445567889999999999988542 1222345556788899999999999999998887432 222345555555543
No 313
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=59.63 E-value=23 Score=31.07 Aligned_cols=35 Identities=14% Similarity=0.067 Sum_probs=21.1
Q ss_pred CCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 021583 120 GRTMGTY-FLLLNALAEDGRLDEAEELWTKIFLDHL 154 (310)
Q Consensus 120 ~p~~~ty-~~ll~~~~~~g~~~~A~~~~~~m~~~~~ 154 (310)
.||..+| +..|..-.+.||+++|++++++-++.|+
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~ 288 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGS 288 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3444333 4566666666666666666666666666
No 314
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.89 E-value=1.3e+02 Score=30.54 Aligned_cols=124 Identities=17% Similarity=0.236 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH----HHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHH
Q 021583 89 ITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLL----LNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDK 164 (310)
Q Consensus 89 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~l----l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~ 164 (310)
.....-|..+++..-++.|..+-+. .+ .|..+-..+ -+-+.+.|++++|..-+-+-... + .+ .-
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~---~~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-l-e~-----s~ 402 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKS---QH--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-L-EP-----SE 402 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHh---cC--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-C-Ch-----HH
Confidence 3455667778888888888877643 33 333333333 34456789999999888765532 1 12 23
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCcc
Q 021583 165 MISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKW 225 (310)
Q Consensus 165 li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~ 225 (310)
+|.-|....++.+.-..++.+-++|.- +...-+.|+++|.+.++.++-.++.+++....|
T Consensus 403 Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~ 462 (933)
T KOG2114|consen 403 VIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEW 462 (933)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcce
Confidence 566677777777788888888888875 555568999999999999998888877654433
No 315
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=57.32 E-value=42 Score=20.45 Aligned_cols=30 Identities=10% Similarity=0.265 Sum_probs=13.9
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCChHHHHHHH
Q 021583 135 EDGRLDEAEELWTKIFLDHLEGTPRIFFDKM 165 (310)
Q Consensus 135 ~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~l 165 (310)
+.|-++++..++++|.+.|+. .+...|+.+
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~-is~~l~~~~ 43 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFR-ISPKLIEEI 43 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcc-cCHHHHHHH
Confidence 344444555555555555553 333334433
No 316
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=56.11 E-value=26 Score=30.73 Aligned_cols=42 Identities=19% Similarity=0.299 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 021583 160 IFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMG 201 (310)
Q Consensus 160 ~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li 201 (310)
.=||.-|..-.+.||+++|++|++|-++.|+.-=..||..-+
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 358999999999999999999999999999875556655443
No 317
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=56.05 E-value=51 Score=24.82 Aligned_cols=43 Identities=16% Similarity=0.390 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 021583 141 EAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFA 183 (310)
Q Consensus 141 ~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~ 183 (310)
.+.++|..|...++-..-..-|...-..+...|++++|.++|.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555555555522222345555555555555555555554
No 318
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=53.74 E-value=37 Score=24.63 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=9.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 021583 129 LLNALAEDGRLDEAEELWTKI 149 (310)
Q Consensus 129 ll~~~~~~g~~~~A~~~~~~m 149 (310)
+|..|...|+.++|...++++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 334444444444444444443
No 319
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=53.59 E-value=83 Score=22.72 Aligned_cols=63 Identities=8% Similarity=-0.091 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 021583 103 DWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMIS 167 (310)
Q Consensus 103 ~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~ 167 (310)
+.-++.+-++.+....+.|+.....+-+++|-+-+++..|.++|+-.+.+.- .+...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 4456777777777888899999999999999999999999999998775432 12235666554
No 320
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=53.54 E-value=2e+02 Score=27.11 Aligned_cols=114 Identities=10% Similarity=-0.032 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhc--CCCC---------
Q 021583 90 TVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNAL--AEDGRLDEAEELWTKIFLD--HLEG--------- 156 (310)
Q Consensus 90 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~--~~~g~~~~A~~~~~~m~~~--~~~~--------- 156 (310)
..+-+|++|... +.+.........++. .| ...|-.|..++ .+.+..++|.+.+..-.+. +..+
T Consensus 48 l~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~ 123 (549)
T PF07079_consen 48 LGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQ 123 (549)
T ss_pred HhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHH
Confidence 455667777654 355555555554432 12 23344444433 3556677776666554443 2111
Q ss_pred -ChH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhc
Q 021583 157 -TPR-IFFDKMISIYYNRGMHEKMFEIFADMEELG----VRPNVSIVSMMGNAFQKL 207 (310)
Q Consensus 157 -~~~-~~y~~li~~~~~~g~~~~a~~l~~~m~~~g----~~p~~~ty~~li~~~~~~ 207 (310)
.+. .-=++.+.++...|+++++..+++.|...- +.++..+|+.++--+++.
T Consensus 124 l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrS 180 (549)
T PF07079_consen 124 LFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRS 180 (549)
T ss_pred HhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHH
Confidence 111 122455666677888888887777776543 347777777755544443
No 321
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=53.36 E-value=89 Score=23.02 Aligned_cols=80 Identities=11% Similarity=0.150 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 021583 102 KDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEI 181 (310)
Q Consensus 102 ~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l 181 (310)
.+.++|..+.+++...+. -...+--+-+..+.+.|++++|+ .. ......++...|-+|-. .+.|..++++..
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~AL---l~--~~~~~~pdL~p~~AL~a--~klGL~~~~e~~ 91 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEAL---LL--PQCHCYPDLEPWAALCA--WKLGLASALESR 91 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHH---HH--HTTS--GGGHHHHHHHH--HHCT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHH---Hh--cccCCCccHHHHHHHHH--HhhccHHHHHHH
Confidence 457888888888887754 22233334456677888888882 11 11121355556666544 478888888888
Q ss_pred HHHHHHCC
Q 021583 182 FADMEELG 189 (310)
Q Consensus 182 ~~~m~~~g 189 (310)
+..+..+|
T Consensus 92 l~rla~~g 99 (116)
T PF09477_consen 92 LTRLASSG 99 (116)
T ss_dssp HHHHCT-S
T ss_pred HHHHHhCC
Confidence 88777655
No 322
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=53.01 E-value=78 Score=22.26 Aligned_cols=67 Identities=22% Similarity=0.185 Sum_probs=40.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHH
Q 021583 107 IIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFE 180 (310)
Q Consensus 107 a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~ 180 (310)
+.++++...+.|+ .+..-...+-.+-...|+.+.|.++++.+. +|- -.|...+.++...|..+-|.+
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~-----~aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKE-----GWFSKFLQALRETEHHELARE 87 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCC-----cHHHHHHHHHHHcCchhhhhc
Confidence 4556666666663 333333333333345577778888888777 543 257777777777777665543
No 323
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=52.79 E-value=91 Score=24.13 Aligned_cols=68 Identities=13% Similarity=0.142 Sum_probs=49.8
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 021583 143 EELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDK 212 (310)
Q Consensus 143 ~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 212 (310)
.++.+.+++.|++.. .---.++..+.+.+++-.|.++++++.+.+...+..|.-.-++.+...|-+.+
T Consensus 6 ~~~~~~lk~~glr~T--~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv~~ 73 (145)
T COG0735 6 EDAIERLKEAGLRLT--PQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLVHR 73 (145)
T ss_pred HHHHHHHHHcCCCcC--HHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCEEE
Confidence 345667778888522 34567888888888889999999999998777766555555677777777654
No 324
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=52.37 E-value=99 Score=30.51 Aligned_cols=47 Identities=17% Similarity=0.248 Sum_probs=29.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH--HCCCCCCHHHHHHHHHHHHhcCCH
Q 021583 93 KALKTLENEKDWKRIIQVTKWML--SKGQGRTMGTYFLLLNALAEDGRL 139 (310)
Q Consensus 93 ~li~~~~~~~~~~~a~~~~~~m~--~~g~~p~~~ty~~ll~~~~~~g~~ 139 (310)
+|+.+|...|++.++.++++... ..|-+.-...||..|+...+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 56667777777777777766655 333344455666666666666654
No 325
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=52.17 E-value=1.9e+02 Score=26.47 Aligned_cols=189 Identities=12% Similarity=0.021 Sum_probs=100.6
Q ss_pred HHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---cCCHHHH
Q 021583 72 VYGALDSFIAWELEF---PLITVKKALKTLENEKDWKRIIQVTKWMLSKG---QGRTMGTYFLLLNALAE---DGRLDEA 142 (310)
Q Consensus 72 ~~~~~~~m~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~ty~~ll~~~~~---~g~~~~A 142 (310)
....+.++..+=-.| +..+...++..|....+++...++.+.|...- +.-+...--...-++-+ .|+.++|
T Consensus 122 l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~A 201 (374)
T PF13281_consen 122 LAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKA 201 (374)
T ss_pred HHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHH
Confidence 344555555431123 23344566777999999999999999988652 11111211223344455 7899999
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 021583 143 EELWTKIFLDHLEGTPRIFFDKMISIYYN---------RGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKY 213 (310)
Q Consensus 143 ~~~~~~m~~~~~~~~~~~~y~~li~~~~~---------~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a 213 (310)
++++..+....- +.+..+|..+-..|-. ....++|...|.+--+ +.||..+=..+...+...|...+.
T Consensus 202 l~il~~~l~~~~-~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~ 278 (374)
T PF13281_consen 202 LQILLPVLESDE-NPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFET 278 (374)
T ss_pred HHHHHHHHhccC-CCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccc
Confidence 999998554443 2444577776665532 1235666666665433 335543333333333344432222
Q ss_pred HHHHHhCCCCccchhe-eccCc-ccC--ChhhhhHhhhc--cCCChhhHHhhhchhhcC
Q 021583 214 EKLKKKYPPPKWEYRY-IKGKR-VRI--PAKPKYELDSA--TEGKTNEVETTKNPNESS 266 (310)
Q Consensus 214 ~~l~~~~~p~~~~~~~-~~~~~-~~~--~~~~~~~li~~--~~g~~~~a~~~~~~m~~~ 266 (310)
..-.++ -..+++. +.+.| ... +-=-+.++.++ -.|+.+.|.+..+.|...
T Consensus 279 ~~el~~---i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 279 SEELRK---IGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred hHHHHH---HHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 111111 0111221 11111 112 22223456666 889999999999998755
No 326
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=51.76 E-value=61 Score=22.56 Aligned_cols=42 Identities=12% Similarity=0.008 Sum_probs=19.0
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQV 110 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 110 (310)
+..+.++.++..|.+++- ...|...|+.++.+.|.-+-|..+
T Consensus 44 ~~~eq~~~mL~~W~~r~g--~~AT~~~L~~aL~~~~~~diae~l 85 (86)
T cd08318 44 DIKMQAKQLLVAWQDREG--SQATPETLITALNAAGLNEIAESL 85 (86)
T ss_pred CHHHHHHHHHHHHHHhcC--ccccHHHHHHHHHHcCcHHHHHhh
Confidence 334445555555554421 123444555555555544444433
No 327
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=51.45 E-value=48 Score=27.20 Aligned_cols=56 Identities=9% Similarity=0.070 Sum_probs=40.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC--------------CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 021583 92 KKALKTLENEKDWKRIIQVTKWMLSKGQ--------------GRTMGTYFLLLNALAEDGRLDEAEELWT 147 (310)
Q Consensus 92 ~~li~~~~~~~~~~~a~~~~~~m~~~g~--------------~p~~~ty~~ll~~~~~~g~~~~A~~~~~ 147 (310)
-++|..|-+..++.+++++++.|-+..+ .+-...-|.-...+.+.|.+|.|..+++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 4667788888888888888888865533 2334555666777778888888887776
No 328
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=51.41 E-value=16 Score=27.99 Aligned_cols=32 Identities=13% Similarity=0.120 Sum_probs=21.4
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 021583 135 EDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIY 169 (310)
Q Consensus 135 ~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~ 169 (310)
+.|.-.+|-.+|.+|.++|- ||+ .|+.|+...
T Consensus 107 ~ygsk~DaY~VF~kML~~G~-pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGN-PPD--DWDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCC-CCc--cHHHHHHHh
Confidence 34555677888888888886 332 577777653
No 329
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=50.96 E-value=93 Score=22.53 Aligned_cols=21 Identities=5% Similarity=0.019 Sum_probs=9.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 021583 94 ALKTLENEKDWKRIIQVTKWM 114 (310)
Q Consensus 94 li~~~~~~~~~~~a~~~~~~m 114 (310)
++..|...+++++|.+-+.++
T Consensus 8 ~l~ey~~~~D~~ea~~~l~~L 28 (113)
T smart00544 8 IIEEYLSSGDTDEAVHCLLEL 28 (113)
T ss_pred HHHHHHHcCCHHHHHHHHHHh
Confidence 344444444444444444443
No 330
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=50.84 E-value=31 Score=22.71 Aligned_cols=49 Identities=12% Similarity=-0.017 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Q 021583 121 RTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYN 171 (310)
Q Consensus 121 p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~ 171 (310)
|+...++.|+..+++..-++++...+++..+.|. .+..+|---++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~--I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS--IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHH
Confidence 4445555666666666666666666666666554 333445544444444
No 331
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=50.82 E-value=98 Score=30.56 Aligned_cols=77 Identities=12% Similarity=0.071 Sum_probs=55.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC-CChHHHHHHHHHHHHHcCCHHHH---HHHHHHHHHCCCCCCHHHHHHHHHH
Q 021583 128 LLLNALAEDGRLDEAEELWTKIFLDHLE-GTPRIFFDKMISIYYNRGMHEKM---FEIFADMEELGVRPNVSIVSMMGNA 203 (310)
Q Consensus 128 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~y~~li~~~~~~g~~~~a---~~l~~~m~~~g~~p~~~ty~~li~~ 203 (310)
+|+.+|..+|++-.+.++++.+...+-- ..-...||..|+.+.+.|.++-. ..+-+.+++..+--|..||..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 8999999999999999999988765431 01123799999999999986532 2233334455566788888877765
Q ss_pred H
Q 021583 204 F 204 (310)
Q Consensus 204 ~ 204 (310)
-
T Consensus 113 s 113 (1117)
T COG5108 113 S 113 (1117)
T ss_pred h
Confidence 4
No 332
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=50.67 E-value=2.7e+02 Score=27.87 Aligned_cols=101 Identities=11% Similarity=0.156 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCccchheeccCcccCCh
Q 021583 161 FFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKY-PPPKWEYRYIKGKRVRIPA 239 (310)
Q Consensus 161 ~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~-~p~~~~~~~~~~~~~~~~~ 239 (310)
..-.|-..+...|.-++|.+.|-+-- .| ...+..|....+|.+|-++-++. .|...+.-.-....+..+.
T Consensus 854 llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~ 924 (1189)
T KOG2041|consen 854 LLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADA 924 (1189)
T ss_pred hHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhc
Confidence 44555666666676666666553321 12 23456677777888887776654 2333332211111222222
Q ss_pred hhhhHhhhc-cCCChhhHHhhhchhh----cCCCCC
Q 021583 240 KPKYELDSA-TEGKTNEVETTKNPNE----SSEEPE 270 (310)
Q Consensus 240 ~~~~~li~~-~~g~~~~a~~~~~~m~----~~~~~p 270 (310)
.+..++-.. +.|..-+|.+++..|- .++.||
T Consensus 925 ~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~ 960 (1189)
T KOG2041|consen 925 NHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPY 960 (1189)
T ss_pred chHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCH
Confidence 223332222 6777777777775553 355555
No 333
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=49.93 E-value=2.2e+02 Score=26.50 Aligned_cols=109 Identities=11% Similarity=-0.044 Sum_probs=74.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH--H
Q 021583 97 TLENEKDWKRIIQVTKWMLSK---GQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYY--N 171 (310)
Q Consensus 97 ~~~~~~~~~~a~~~~~~m~~~---g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~--~ 171 (310)
-..+.|++..|.+.|.+-++. +.+|+...|-..-.+..+.|+..+|..--++.... .+...+--+..+-| -
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLA 333 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHH
Confidence 345788999999999987643 56778888888888999999999998887776653 33455555555555 4
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 021583 172 RGMHEKMFEIFADMEELGVRP-NVSIVSMMGNAFQKLGM 209 (310)
Q Consensus 172 ~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~ 209 (310)
.++|++|.+-++...+.--.+ +..|+.-...++-+..+
T Consensus 334 le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkR 372 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKR 372 (486)
T ss_pred HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhh
Confidence 678888888887765432222 33555544444544333
No 334
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=49.62 E-value=1.7e+02 Score=27.21 Aligned_cols=128 Identities=12% Similarity=0.038 Sum_probs=80.5
Q ss_pred CCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCCChHHH-
Q 021583 86 FPLITVKKA-LKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALA--EDGRLDEAEELWTKIFLDHLEGTPRIF- 161 (310)
Q Consensus 86 p~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~--~~g~~~~A~~~~~~m~~~~~~~~~~~~- 161 (310)
|...+|-.+ ..++.-.|+.++|.++-...++.. .+-.+..++++.+ -.++.+.|...|.+-...+-.+...-+
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~ 242 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSA 242 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhH
Confidence 444455444 234456688888887777665442 2234455555554 346677777777776655432111111
Q ss_pred ---------HHHHHHHHHHcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 021583 162 ---------FDKMISIYYNRGMHEKMFEIFADMEE---LGVRPNVSIVSMMGNAFQKLGMLDKYEKL 216 (310)
Q Consensus 162 ---------y~~li~~~~~~g~~~~a~~l~~~m~~---~g~~p~~~ty~~li~~~~~~g~~~~a~~l 216 (310)
|..=-+-..+.|++.+|.+.|.+-.. .+++|+...|.....+..+.|++++|..-
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisd 309 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISD 309 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhh
Confidence 11122234578999999999998764 36777788888888888899999998655
No 335
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=49.55 E-value=94 Score=22.19 Aligned_cols=31 Identities=19% Similarity=0.127 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 021583 123 MGTYFLLLNALAEDGRLDEAEELWTKIFLDH 153 (310)
Q Consensus 123 ~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~ 153 (310)
..|+..|+.++.+.|.-.-|+++-+.+...|
T Consensus 64 ~At~~~L~~aL~~~~~~~~Ae~I~~~l~~~~ 94 (96)
T cd08315 64 KASVNTLLDALEAIGLRLAKESIQDELISSG 94 (96)
T ss_pred CcHHHHHHHHHHHcccccHHHHHHHHHHHcC
Confidence 3556666666666666666666666655554
No 336
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=49.48 E-value=1.5e+02 Score=24.47 Aligned_cols=93 Identities=10% Similarity=0.043 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheecc----Ccc
Q 021583 160 IFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKG----KRV 235 (310)
Q Consensus 160 ~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~----~~~ 235 (310)
+-|.....+-|+.-..+++.+.+- ..+=.+++..|-+.-+|.+..++++.+..-...|..+++ .+.
T Consensus 108 vPFceFAetV~k~~q~~e~dK~~L----------GRiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~ 177 (233)
T PF14669_consen 108 VPFCEFAETVCKDPQNDEVDKTLL----------GRIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKL 177 (233)
T ss_pred CCHHHHHHHHhcCCccchhhhhhh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCcccc
Confidence 345555555555544444333221 123356777788888999999998765444444554443 233
Q ss_pred cCChhhhhHhhhc--cCCChhhHHhhhch
Q 021583 236 RIPAKPKYELDSA--TEGKTNEVETTKNP 262 (310)
Q Consensus 236 ~~~~~~~~~li~~--~~g~~~~a~~~~~~ 262 (310)
.+.-...|.-.+- ..|.++.|..++++
T Consensus 178 asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 178 ASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred CchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 3444455554454 89999999888763
No 337
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=49.10 E-value=1.1e+02 Score=23.03 Aligned_cols=42 Identities=12% Similarity=0.167 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 021583 177 KMFEIFADMEELGVRPN-VSIVSMMGNAFQKLGMLDKYEKLKK 218 (310)
Q Consensus 177 ~a~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~l~~ 218 (310)
+..++|..|..+||--. +.-|......+...|++.+|.++|+
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35666777777665544 3556666666677777777777764
No 338
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=48.90 E-value=1.2e+02 Score=23.56 Aligned_cols=47 Identities=13% Similarity=0.112 Sum_probs=28.6
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 021583 75 ALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRT 122 (310)
Q Consensus 75 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 122 (310)
+...+.+.|++++..= ..++..+.+.+++-.|.++|+++.+.+-.-+
T Consensus 8 ~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~is 54 (145)
T COG0735 8 AIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGIS 54 (145)
T ss_pred HHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCC
Confidence 3445566677666543 2556666666666777777777776654443
No 339
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=48.40 E-value=1.5e+02 Score=24.31 Aligned_cols=94 Identities=13% Similarity=0.036 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh-H-HHHHHHHH-HHHHcCC--HHHHHHHHHHHHHCCCCCCH----
Q 021583 124 GTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTP-R-IFFDKMIS-IYYNRGM--HEKMFEIFADMEELGVRPNV---- 194 (310)
Q Consensus 124 ~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~-~~y~~li~-~~~~~g~--~~~a~~l~~~m~~~g~~p~~---- 194 (310)
.-++...-.....|++++|.+-++++.+.--+ .. . ..|..+.. +||..+. +-+|.-++.-... +..|..
T Consensus 30 ~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~-Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~-~~~ps~~EL~ 107 (204)
T COG2178 30 VRLSGEAIFLLHRGDFEEAEKKLKKASEAVEK-LKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKD-GRLPSPEELG 107 (204)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhc-CCCCCHHHcC
Confidence 44566666677888999998888877654111 11 1 36788877 7787765 4455555555544 445544
Q ss_pred HHHHHHHHHHH--------------hcCCHHHHHHHHHh
Q 021583 195 SIVSMMGNAFQ--------------KLGMLDKYEKLKKK 219 (310)
Q Consensus 195 ~ty~~li~~~~--------------~~g~~~~a~~l~~~ 219 (310)
+.+...|.+.+ +.|+++.|++.++-
T Consensus 108 V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ 146 (204)
T COG2178 108 VPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKF 146 (204)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 23333444443 67889998888654
No 340
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=47.19 E-value=1.5e+02 Score=23.73 Aligned_cols=101 Identities=10% Similarity=0.115 Sum_probs=70.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 021583 107 IIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADME 186 (310)
Q Consensus 107 a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~ 186 (310)
..+....+.+.|+.|+...|..+++.+.+.|+...- ..+.+.++. .|...-...+-. ..+....+.++--+|.
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi-~DSk~lA~~LLs--~~~~~~~~~Ql~lDML 85 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVI-PDSKPLACQLLS--LGNQYPPAYQLGLDML 85 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhccc-CCcHHHHHHHHH--hHccChHHHHHHHHHH
Confidence 355666677889999999999999999999987654 445555663 333322222222 2234566777777776
Q ss_pred HC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 187 EL-GVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 187 ~~-g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
.. + ..+..+++.+...|++-+|.++.+.
T Consensus 86 kRL~-----~~~~~iievLL~~g~vl~ALr~ar~ 114 (167)
T PF07035_consen 86 KRLG-----TAYEEIIEVLLSKGQVLEALRYARQ 114 (167)
T ss_pred HHhh-----hhHHHHHHHHHhCCCHHHHHHHHHH
Confidence 43 2 1367888999999999999999765
No 341
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=46.95 E-value=2.6e+02 Score=26.59 Aligned_cols=120 Identities=10% Similarity=0.028 Sum_probs=79.6
Q ss_pred HHHHHhcCCHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcC
Q 021583 95 LKTLENEKDWKRI-IQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRG 173 (310)
Q Consensus 95 i~~~~~~~~~~~a-~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g 173 (310)
|.--...|++-.| .++|..++...--|+....-+.| +..-|+++++.+.+......- .....+-..++...-+.|
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~~--~s~~~~~~~~~r~~~~l~ 371 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKII--GTTDSTLRCRLRSLHGLA 371 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhhh--cCCchHHHHHHHhhhchh
Confidence 3344455666554 67777777666667755443333 345688999888876654331 233467889999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 174 MHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 174 ~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
++++|..+-+.|....++- ........-.--..|-+|++...|++
T Consensus 372 r~~~a~s~a~~~l~~eie~-~ei~~iaa~sa~~l~~~d~~~~~wk~ 416 (831)
T PRK15180 372 RWREALSTAEMMLSNEIED-EEVLTVAAGSADALQLFDKSYHYWKR 416 (831)
T ss_pred hHHHHHHHHHHHhccccCC-hhheeeecccHHHHhHHHHHHHHHHH
Confidence 9999999999999776652 22222222233456788898888876
No 342
>PRK09857 putative transposase; Provisional
Probab=46.73 E-value=1.9e+02 Score=25.36 Aligned_cols=68 Identities=15% Similarity=0.054 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 021583 124 GTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPN 193 (310)
Q Consensus 124 ~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~ 193 (310)
..+..+++-..+.|+.++..++++.+.+. . +......-++..-+.+.|..+++.++...|...|+.++
T Consensus 207 ~~~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~-~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 207 RQIKGLFNYILQTGDAVRFNDFIDGVAER-S-PKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHh-C-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 44567777777888888888888888765 2 12223344566777777877888889999998888765
No 343
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=46.60 E-value=1.1e+02 Score=25.72 Aligned_cols=98 Identities=11% Similarity=0.012 Sum_probs=43.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--ChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 021583 119 QGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEG--TPR--IFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNV 194 (310)
Q Consensus 119 ~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~--~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~ 194 (310)
+.++..-+|.|+--|.-...+.+|-+.|.. +.++.+ .+. ..=..-|......|++++|++..+...-.-+.-|.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 345555555554444444444444444432 234422 111 12223455556666666666666665533333332
Q ss_pred HH-HHHHHH---HHHhcCCHHHHHHHHH
Q 021583 195 SI-VSMMGN---AFQKLGMLDKYEKLKK 218 (310)
Q Consensus 195 ~t-y~~li~---~~~~~g~~~~a~~l~~ 218 (310)
.. |..+-. =..+.|..++|+++.+
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q 127 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQ 127 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 11 111111 1345566666655543
No 344
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=46.21 E-value=1.7e+02 Score=24.16 Aligned_cols=99 Identities=16% Similarity=0.143 Sum_probs=78.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCH
Q 021583 118 GQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEEL---GVRPNV 194 (310)
Q Consensus 118 g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~---g~~p~~ 194 (310)
...|++..--.|-+++...|+..+|+..|++-.. |+-..+....-.+-++....+++..|...++.+-+. +-.||.
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 4568888888899999999999999999999775 543455567777888888899999999999998764 455665
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 195 SIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 195 ~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
. -.+-+.|...|...+|+.-|+.
T Consensus 163 ~--Ll~aR~laa~g~~a~Aesafe~ 185 (251)
T COG4700 163 H--LLFARTLAAQGKYADAESAFEV 185 (251)
T ss_pred h--HHHHHHHHhcCCchhHHHHHHH
Confidence 3 4556778888888888777664
No 345
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=46.00 E-value=2.1e+02 Score=25.21 Aligned_cols=119 Identities=13% Similarity=0.178 Sum_probs=73.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcC
Q 021583 94 ALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRG 173 (310)
Q Consensus 94 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g 173 (310)
-.......|++.+|..+|....... .-+...--.|...|...|+.+.|..++..+...--. .....-..=|..+.+..
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~-~~~~~l~a~i~ll~qaa 217 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQD-KAAHGLQAQIELLEQAA 217 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchh-hHHHHHHHHHHHHHHHh
Confidence 3445567788888888888876542 223455567788888889999999998887765321 11112122334444455
Q ss_pred CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 174 MHEKMFEIFADMEELGVRP-NVSIVSMMGNAFQKLGMLDKYEKLK 217 (310)
Q Consensus 174 ~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~l~ 217 (310)
...+...+-.+..+ -| |...=-.+...|...|+.+.|...+
T Consensus 218 ~~~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~L 259 (304)
T COG3118 218 ATPEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHL 259 (304)
T ss_pred cCCCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55444444444443 45 4444455666777888888887765
No 346
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=45.58 E-value=1.2e+02 Score=28.52 Aligned_cols=61 Identities=11% Similarity=0.230 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 021583 127 FLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELG 189 (310)
Q Consensus 127 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g 189 (310)
..|+.-|...|++.+|.++.+++---.+ ...+++-+++-+.-+.|+-...+.++++.-..|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfF--hHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFF--HHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcc--hHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 3455555555555555555554322221 223455555555555555555555555544433
No 347
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.83 E-value=1.2e+02 Score=30.19 Aligned_cols=93 Identities=13% Similarity=-0.021 Sum_probs=68.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 021583 118 GQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIV 197 (310)
Q Consensus 118 g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty 197 (310)
|....--+.+--+.-+...|+..+|.++-.+.+ .++-..|-.=+.+++..+++++.+++-..++. +.-|
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy 747 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGY 747 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCc
Confidence 433444445555666777888888888766543 24556788889999999999999998877653 2335
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC
Q 021583 198 SMMGNAFQKLGMLDKYEKLKKKYP 221 (310)
Q Consensus 198 ~~li~~~~~~g~~~~a~~l~~~~~ 221 (310)
.-.+.+|.+.|+.++|.+.+-++.
T Consensus 748 ~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 748 LPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred hhHHHHHHhcccHHHHhhhhhccC
Confidence 667788999999999999876644
No 348
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=43.66 E-value=42 Score=16.49 Aligned_cols=25 Identities=36% Similarity=0.402 Sum_probs=12.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 021583 126 YFLLLNALAEDGRLDEAEELWTKIF 150 (310)
Q Consensus 126 y~~ll~~~~~~g~~~~A~~~~~~m~ 150 (310)
|..+-..+...|+.++|...|++..
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3344444445555555555554443
No 349
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=43.52 E-value=17 Score=27.81 Aligned_cols=33 Identities=18% Similarity=0.142 Sum_probs=25.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 021583 99 ENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNAL 133 (310)
Q Consensus 99 ~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~ 133 (310)
.+.|.-.+|..+|.+|.++|..|| .|+.|+...
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 345666789999999999999998 456666543
No 350
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=43.23 E-value=1.1e+02 Score=22.34 Aligned_cols=27 Identities=26% Similarity=0.230 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 021583 125 TYFLLLNALAEDGRLDEAEELWTKIFL 151 (310)
Q Consensus 125 ty~~ll~~~~~~g~~~~A~~~~~~m~~ 151 (310)
-|..|+..|...|..++|++++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 478899999999999999999998887
No 351
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.10 E-value=3e+02 Score=26.19 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 021583 161 FFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVS 195 (310)
Q Consensus 161 ~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ 195 (310)
.+..++.+....+....|+.++++|.+.|..|..+
T Consensus 250 ~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 250 FLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 34555555554445567888888888888776654
No 352
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=42.57 E-value=1.6e+02 Score=22.79 Aligned_cols=134 Identities=18% Similarity=0.111 Sum_probs=90.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhcCCC-CChHHHH
Q 021583 85 EFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLN-ALAEDGRLDEAEELWTKIFLDHLE-GTPRIFF 162 (310)
Q Consensus 85 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~-~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~y 162 (310)
......+......+...+++..+.+.+.........+. ........ .+...|+.++|...|.+.....-. ......+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 170 (291)
T COG0457 92 PNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALELDPELNELAEAL 170 (291)
T ss_pred cchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHH
Confidence 34455666777777777888888888888776544431 22222222 788889999999999988552210 0122345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 163 DKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 163 ~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
......+...++.+.+...+..............+..+-..+...++.+.+...+..
T Consensus 171 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 227 (291)
T COG0457 171 LALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEK 227 (291)
T ss_pred HHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 555555778889999999888887643221467788888888888888888888765
No 353
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=42.27 E-value=1.3e+02 Score=21.73 Aligned_cols=61 Identities=13% Similarity=0.164 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCC
Q 021583 127 FLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNR-GMHEKMFEIFADMEELG 189 (310)
Q Consensus 127 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~-g~~~~a~~l~~~m~~~g 189 (310)
..++.-|...|++++|...+.++.-... .+.+.+..+..++-+. ..-+.+..++..+.+.+
T Consensus 6 ~~~l~ey~~~~D~~ea~~~l~~L~~~~~--~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~ 67 (113)
T smart00544 6 FLIIEEYLSSGDTDEAVHCLLELKLPEQ--HHEVVKVLLTCALEEKRTYREMYSVLLSRLCQAN 67 (113)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhCCCcc--hHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcC
Confidence 3456666666777777777766654322 2333333333333221 22344444555555444
No 354
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=41.62 E-value=1.3e+02 Score=22.41 Aligned_cols=24 Identities=17% Similarity=0.328 Sum_probs=18.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC
Q 021583 95 LKTLENEKDWKRIIQVTKWMLSKG 118 (310)
Q Consensus 95 i~~~~~~~~~~~a~~~~~~m~~~g 118 (310)
|..+.+|...++|+++.++|.++|
T Consensus 68 iD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 68 IDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC
Confidence 445667777888888888888776
No 355
>COG3682 Predicted transcriptional regulator [Transcription]
Probab=41.47 E-value=98 Score=23.30 Aligned_cols=104 Identities=17% Similarity=0.126 Sum_probs=65.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCcccCChhhhhH
Q 021583 165 MISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYE 244 (310)
Q Consensus 165 li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 244 (310)
+|+.....| ...+.++++.+.+. ..+...|..+||+-+++.|-+..- . .-..+.|..
T Consensus 11 VM~ilW~~~-~~t~~eI~~~l~~~-~ews~sTV~TLl~RL~KKg~l~~~--------------k-------dgr~~~y~p 67 (123)
T COG3682 11 VMEILWSRG-PATVREIIEELPAD-REWSYSTVKTLLNRLVKKGLLTRK--------------K-------DGRAFRYSP 67 (123)
T ss_pred HHHHHHHcC-CccHHHHHHHHhhc-ccccHHHHHHHHHHHHhccchhhh--------------h-------cCCeeeeec
Confidence 445555555 55577888888776 678889999999999999988651 1 123344455
Q ss_pred hhhccCCChhhHHhhhchhhcCCCCCchhhhhhhhhhhhhhhHHHHH
Q 021583 245 LDSATEGKTNEVETTKNPNESSEEPEAAANLNESLEETEANTKELLE 291 (310)
Q Consensus 245 li~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~l~~ 291 (310)
|+.-..-....+...++.....+.++-..+|-.--.-+.+...+|-+
T Consensus 68 L~~~~~~~~~~~~~~l~k~~d~~~~~lv~~F~~~~~l~~~eie~L~~ 114 (123)
T COG3682 68 LLTRDQYVAGESQDLLDKICDGGLASLVAHFAEKEKLTADEIEALKA 114 (123)
T ss_pred ccCHHHHHHHHHHHHHHHHHcccchHHHHHHHHhccCCHHHHHHHHH
Confidence 55543334455667777777777776667776663333333333333
No 356
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=41.37 E-value=1.6e+02 Score=23.43 Aligned_cols=63 Identities=10% Similarity=0.042 Sum_probs=43.1
Q ss_pred HHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 021583 148 KIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDK 212 (310)
Q Consensus 148 ~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 212 (310)
.+++.|++..+ .--.++..+...+++-.|.++++.+.+.+..++..|.---|..+...|-+.+
T Consensus 16 ~L~~~GlR~T~--qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 16 LCAQRNVRLTP--QRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHHcCCCCCH--HHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 35566774222 3345666666667778899999999988877777665555677888887755
No 357
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=41.23 E-value=79 Score=23.01 Aligned_cols=49 Identities=12% Similarity=0.236 Sum_probs=38.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 021583 164 KMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDK 212 (310)
Q Consensus 164 ~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 212 (310)
.++..+...+.+-.|.++++.+.+.+..++..|.--.|+.+...|-+.+
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 3556666667777899999999998877887777677788888888765
No 358
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=41.14 E-value=85 Score=29.09 Aligned_cols=131 Identities=16% Similarity=-0.006 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hcCCCCChH
Q 021583 89 ITVKKALKTLENEKDWKRIIQVTKWML----SKGQG-RTMGTYFLLLNALAEDGRLDEAEELWTKIF----LDHLEGTPR 159 (310)
Q Consensus 89 ~~~~~li~~~~~~~~~~~a~~~~~~m~----~~g~~-p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~ 159 (310)
..|..|-+.|.-.|+++.|....+.-. +.|-+ --...|+.|-+++.-.|+++.|.+.++.-. +.|-+....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 467777788888899999988877532 33322 235678899999999999999999887643 333322222
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 160 IFFDKMISIYYNRGMHEKMFEIFADMEE----LG-VRPNVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 160 ~~y~~li~~~~~~g~~~~a~~l~~~m~~----~g-~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
-++-+|-++|--..++++|+..+..=.. .+ ..-....|-+|-.+|...|..++|+.+.+.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3677888999988999999887765332 11 112347888999999999999999888753
No 359
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=41.12 E-value=1.8e+02 Score=23.13 Aligned_cols=60 Identities=10% Similarity=0.082 Sum_probs=28.9
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 021583 79 FIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRL 139 (310)
Q Consensus 79 m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~ 139 (310)
+.+.|++++..-. .++..+...+++-.|.++++.+.+.+...+..|-=--|+.+...|-+
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 3444555554433 33444444444555666666666555444443333334444444443
No 360
>cd08779 Death_PIDD Death Domain of p53-induced protein with a death domain. Death domain (DD) found in PIDD (p53-induced protein with a death domain) and similar proteins. PIDD is a component of the PIDDosome complex, which is an oligomeric caspase-activating complex involved in caspase-2 activation and plays a role in mediating stress-induced apoptosis. The PIDDosome complex is composed of three components, PIDD, RAIDD and caspase-2, which interact through their DDs and DD-like domains. The DD of PIDD interacts with the DD of RAIDD, which also contains a Caspase Activation and Recruitment Domain (CARD) that interacts with the caspase-2 CARD. Autoproteolysis of PIDD determines the downstream signaling event, between pro-survival NF-kB or pro-death caspase-2 activation. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members
Probab=39.83 E-value=1.1e+02 Score=21.30 Aligned_cols=43 Identities=19% Similarity=0.153 Sum_probs=24.6
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 021583 67 NVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQV 110 (310)
Q Consensus 67 ~~~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 110 (310)
+..+.++.+|..|.+..- .+..+...|+.++.++|+-+-|.++
T Consensus 40 dl~eq~~~mL~~W~~~~~-~~~atv~~L~~AL~~~gr~dlae~l 82 (86)
T cd08779 40 DLDEQIFDMLFSWAQRQA-GDPDAVGKLVTALEESGRQDLADEV 82 (86)
T ss_pred CHHHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHcCHHHHHHHH
Confidence 345556666666665431 1234466677777777666555544
No 361
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=39.82 E-value=2e+02 Score=27.03 Aligned_cols=68 Identities=10% Similarity=0.043 Sum_probs=49.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCccchheecc
Q 021583 162 FDKMISIYYNRGMHEKMFEIFADMEELGVRP--NVSIVSMMGNAFQKLGMLDKYEKLKKKY-PPPKWEYRYIKG 232 (310)
Q Consensus 162 y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p--~~~ty~~li~~~~~~g~~~~a~~l~~~~-~p~~~~~~~~~~ 232 (310)
...|+.-|.-.|++.+|.+.++++- ++- ....+.+++.+.-+.|+-...+.+++.+ .....|.+.|.+
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLg---mPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglIT~nQMtk 582 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELG---MPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLITTNQMTK 582 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhC---CCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCceeHHHhhh
Confidence 5678888999999999988877754 332 3478899999999999988888888764 333444444443
No 362
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=39.63 E-value=65 Score=21.56 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=23.3
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 021583 171 NRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLG 208 (310)
Q Consensus 171 ~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g 208 (310)
-.|+.+.+.+++++..+.|..|.......+..+.-+-|
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 35666777777777776666666666665655554433
No 363
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=39.51 E-value=1.6e+02 Score=26.15 Aligned_cols=59 Identities=15% Similarity=0.211 Sum_probs=49.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Q 021583 107 IIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYN 171 (310)
Q Consensus 107 a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~ 171 (310)
-.++|..|+..++.|.-++|.=+.-.+.+.=.+.++..+|+.+...... |..|+..||.
T Consensus 262 D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r------fd~Ll~iCcs 320 (370)
T KOG4567|consen 262 DEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR------FDFLLYICCS 320 (370)
T ss_pred hHHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh------hHHHHHHHHH
Confidence 3688999999999999999988888888888899999999999987553 6677777764
No 364
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=39.27 E-value=1.4e+02 Score=21.41 Aligned_cols=62 Identities=11% Similarity=0.072 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCC
Q 021583 91 VKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDG--RLDEAEELWTKIFLDHL 154 (310)
Q Consensus 91 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g--~~~~A~~~~~~m~~~~~ 154 (310)
...+|..|...++.++|.+-+.++.... --......+|..+...+ .-+-+..++..+.+.+.
T Consensus 5 i~~~l~ey~~~~d~~ea~~~l~el~~~~--~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~ 68 (113)
T PF02847_consen 5 IFSILMEYFSSGDVDEAVECLKELKLPS--QHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKL 68 (113)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHTT-GG--GHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCCc--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCC
Confidence 3566778888899999988887764331 22233344444444442 23456777778877776
No 365
>PF13934 ELYS: Nuclear pore complex assembly
Probab=39.00 E-value=2.3e+02 Score=23.73 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=11.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCC
Q 021583 200 MGNAFQKLGMLDKYEKLKKKYPPP 223 (310)
Q Consensus 200 li~~~~~~g~~~~a~~l~~~~~p~ 223 (310)
++.++...|+.+.|+++++...|.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~p~ 137 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVGPP 137 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcCCC
Confidence 444444455555555555444444
No 366
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=38.84 E-value=1.9e+02 Score=22.68 Aligned_cols=53 Identities=11% Similarity=0.117 Sum_probs=34.7
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 021583 135 EDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELG 189 (310)
Q Consensus 135 ~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g 189 (310)
..+++++++.+++.|.-..=+.+-..+|...+ +...|++++|..+|++..+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence 36788888888888775532111112555554 357888888888888887654
No 367
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=38.50 E-value=1.7e+02 Score=21.97 Aligned_cols=44 Identities=16% Similarity=0.179 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 176 EKMFEIFADMEELGVRPN-VSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 176 ~~a~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
+.+.++|..|..+|+--. +.-|......+...|++++|.++|+.
T Consensus 80 ~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 80 SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 399999999999877654 68899999999999999999999864
No 368
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=38.15 E-value=2.9e+02 Score=25.08 Aligned_cols=86 Identities=10% Similarity=-0.029 Sum_probs=56.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCC
Q 021583 96 KTLENEKDWKRIIQVTKWMLSKGQGR-TMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGM 174 (310)
Q Consensus 96 ~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~ 174 (310)
+.|.++|.+++|.+.|..-... .| |.++|..-..+|.+..++..|+.=-...... =...+.+|.+.+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---------d~~Y~KAYSRR~~ 173 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---------DKLYVKAYSRRMQ 173 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---------hHHHHHHHHHHHH
Confidence 5688999999999999875433 45 8899999999999998888776544443322 1234555655544
Q ss_pred -------HHHHHHHHHHHHHCCCCCCH
Q 021583 175 -------HEKMFEIFADMEELGVRPNV 194 (310)
Q Consensus 175 -------~~~a~~l~~~m~~~g~~p~~ 194 (310)
..+|.+=++...+ .+|+.
T Consensus 174 AR~~Lg~~~EAKkD~E~vL~--LEP~~ 198 (536)
T KOG4648|consen 174 ARESLGNNMEAKKDCETVLA--LEPKN 198 (536)
T ss_pred HHHHHhhHHHHHHhHHHHHh--hCccc
Confidence 4444444444333 45663
No 369
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=37.75 E-value=2.8e+02 Score=24.33 Aligned_cols=170 Identities=9% Similarity=-0.096 Sum_probs=82.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh--H-
Q 021583 87 PLITVKKALKTLENEKDWKRIIQVTKWMLSKGQ----GRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTP--R- 159 (310)
Q Consensus 87 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~----~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~- 159 (310)
+...|..+... +.++++++....+.....-. ......|......+.+...+.|.+++.+-.......+.. .
T Consensus 30 ~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~lq~L~Elee~~~~~~~~~~~~~~~~~l 107 (352)
T PF02259_consen 30 EYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKLQQLVELEEIIELKSNLSQNPQDLKSL 107 (352)
T ss_pred hHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccHHHHHHH
Confidence 34444444433 77888888888877654311 123445555555556555566665555554322110000 0
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHH---HHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccC
Q 021583 160 -IFFDKMISIYYNRGMHEKMFEIF---ADMEEL--GVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGK 233 (310)
Q Consensus 160 -~~y~~li~~~~~~g~~~~a~~l~---~~m~~~--g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~ 233 (310)
..|..=+... .++++--..++ ..+... .......+|..+.+.+.+.|.++.|...+.++........
T Consensus 108 ~~~W~~Rl~~~--~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~----- 180 (352)
T PF02259_consen 108 LKRWRSRLPNM--QDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSE----- 180 (352)
T ss_pred HHHHHHHHHHh--ccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCccc-----
Confidence 1233332222 22222222221 112211 1223457889999999999999999998776432110000
Q ss_pred cccCChhhhhHhhhccCCChhhHHhhhchhhc
Q 021583 234 RVRIPAKPKYELDSATEGKTNEVETTKNPNES 265 (310)
Q Consensus 234 ~~~~~~~~~~~li~~~~g~~~~a~~~~~~m~~ 265 (310)
...+.+..-.+-+--..|+..+|...++....
T Consensus 181 ~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 181 SLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 00223322222111156676777766655544
No 370
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.54 E-value=3.5e+02 Score=25.34 Aligned_cols=109 Identities=17% Similarity=0.222 Sum_probs=67.4
Q ss_pred cCchHhHHHHH-HhcCCcHHHHHHHHHHHHHcCCCCCHHHH--------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 021583 52 ISKSAKLVTCI-KGLSNVKEEVYGALDSFIAWELEFPLITV--------KKALKTLENEKDWKRIIQVTKWMLSKGQGRT 122 (310)
Q Consensus 52 ~~~~~~~~~~l-~~~~~~~~~~~~~~~~m~~~~~~p~~~~~--------~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 122 (310)
||+.-.+..++ ..+.+.-+.|+.+|..+.+.=++. ..+= ..++..+.+...++- +..+...|+..+
T Consensus 242 YCQGmNflAallLL~~~~EE~AFW~Lv~iie~~lp~-Yyt~nL~g~qvDQ~VL~~llre~lPkl----~~~l~~~~~~~~ 316 (436)
T KOG2058|consen 242 YCQGMNFLAALLLLLMPSEEDAFWMLVALIENYLPR-YYTPNLIGSQVDQKVLRELLREKLPKL----SLHLEGNGVDAS 316 (436)
T ss_pred chhhHHHHHHHHHHhcCChHHHHHHHHHHHHHhchh-hcCchhhhhhccHHHHHHHHHHHCHHH----HHhhhhcCCCee
Confidence 55554555554 444454677888777766543322 1110 113333444433332 244456667778
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 021583 123 MGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIY 169 (310)
Q Consensus 123 ~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~ 169 (310)
.+|++-.|..++..+..+.++++|+-+.-.|.. +.+..-+..|
T Consensus 317 l~t~~wfLt~f~d~lP~~t~LrIwD~~f~eGsk----vlfr~Alai~ 359 (436)
T KOG2058|consen 317 LETLPWFLTLFVDILPSETVLRIWDCLFYEGSK----VLFRVALAIL 359 (436)
T ss_pred eeehhhhHHHhcccccHHHHHHHHHHHHhcccH----HHHHHHHHHH
Confidence 899999999999999999999999999988874 4454444444
No 371
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=37.26 E-value=3.2e+02 Score=24.85 Aligned_cols=108 Identities=12% Similarity=0.101 Sum_probs=57.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHh---CCCCccchh----eeccC
Q 021583 162 FDKMISIYYNRGMHEKMFEIFADMEELGVRPN-VSIVSMMGNAFQKLGMLDKYEKLKKK---YPPPKWEYR----YIKGK 233 (310)
Q Consensus 162 y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~l~~~---~~p~~~~~~----~~~~~ 233 (310)
+..+-.+|...+++.+|++...+... +.|| +.++.--..+|.-..++|.|..=|+. +.++...-. ..++.
T Consensus 310 ~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrl 387 (504)
T KOG0624|consen 310 FRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRL 387 (504)
T ss_pred eheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 33444455566777777777777654 4565 67777777778777788877777654 222211110 00000
Q ss_pred cc-cCChhhhhHhhhccCCChhhHHhhhchhhcCCCCCc
Q 021583 234 RV-RIPAKPKYELDSATEGKTNEVETTKNPNESSEEPEA 271 (310)
Q Consensus 234 ~~-~~~~~~~~~li~~~~g~~~~a~~~~~~m~~~~~~p~ 271 (310)
.- .-...-|..|---++....+.-+.++.|-.++.|-+
T Consensus 388 kkqs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDN 426 (504)
T KOG0624|consen 388 KKQSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDN 426 (504)
T ss_pred HHHhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCcc
Confidence 00 111122333322256666667777777766665543
No 372
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=35.61 E-value=1.4e+02 Score=29.00 Aligned_cols=24 Identities=17% Similarity=0.039 Sum_probs=0.0
Q ss_pred cCCChhhHHhhhchhhcCCCCCch
Q 021583 249 TEGKTNEVETTKNPNESSEEPEAA 272 (310)
Q Consensus 249 ~~g~~~~a~~~~~~m~~~~~~p~~ 272 (310)
..|++.+|.+.+-.+..+.+.|..
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~ 530 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKS 530 (566)
T ss_dssp ------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHH
Confidence 568888888888888787777744
No 373
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=35.53 E-value=54 Score=30.28 Aligned_cols=50 Identities=20% Similarity=0.068 Sum_probs=31.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 021583 97 TLENEKDWKRIIQVTKWMLSKGQ---GRTMGTYFLLLNALAEDGRLDEAEELW 146 (310)
Q Consensus 97 ~~~~~~~~~~a~~~~~~m~~~g~---~p~~~ty~~ll~~~~~~g~~~~A~~~~ 146 (310)
-+|+.|+......+|+...+.|- +.-...|+.|-++|.--+++++|+++.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH 78 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYH 78 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhh
Confidence 35677777777777777666552 223455666666666666666666654
No 374
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=35.34 E-value=99 Score=23.36 Aligned_cols=44 Identities=18% Similarity=0.378 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 021583 140 DEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFA 183 (310)
Q Consensus 140 ~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~ 183 (310)
++..++|..|.+.++-..-..-|...-..+-..|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34667788888887732222367777777777888888888775
No 375
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.25 E-value=4.1e+02 Score=25.47 Aligned_cols=79 Identities=11% Similarity=0.090 Sum_probs=54.9
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------------ChHHHHHHHHHHHHHcCCHHHHHH
Q 021583 113 WMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEG------------TPRIFFDKMISIYYNRGMHEKMFE 180 (310)
Q Consensus 113 ~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~------------~~~~~y~~li~~~~~~g~~~~a~~ 180 (310)
.+.+.|+..+......++... .|+...|..++++....+-.. .+....-.|+.+.. .|+.+.+++
T Consensus 190 il~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~-~~d~~~~l~ 266 (509)
T PRK14958 190 LLKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALA-AKAGDRLLG 266 (509)
T ss_pred HHHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHH-cCCHHHHHH
Confidence 344678887777776666553 589999999998776543211 22223445556544 589999999
Q ss_pred HHHHHHHCCCCCCH
Q 021583 181 IFADMEELGVRPNV 194 (310)
Q Consensus 181 l~~~m~~~g~~p~~ 194 (310)
++++|...|..|..
T Consensus 267 ~~~~l~~~g~~~~~ 280 (509)
T PRK14958 267 CVTRLVEQGVDFSN 280 (509)
T ss_pred HHHHHHHcCCCHHH
Confidence 99999999988754
No 376
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=34.45 E-value=1.5e+02 Score=29.10 Aligned_cols=89 Identities=9% Similarity=0.047 Sum_probs=44.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH---
Q 021583 95 LKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYN--- 171 (310)
Q Consensus 95 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~--- 171 (310)
...+.-.|+++.|.+.+.. ..+...+.+.+.+.+.-|+--+-.+... ..+....-..++...+..||..|++
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 4555667889999888876 3445667777777777665433322222 3333322211222578999999987
Q ss_pred cCCHHHHHHHHHHHHHC
Q 021583 172 RGMHEKMFEIFADMEEL 188 (310)
Q Consensus 172 ~g~~~~a~~l~~~m~~~ 188 (310)
..+..+|.+.+-.+...
T Consensus 340 ~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 340 ITDPREALQYLYLICLF 356 (613)
T ss_dssp TT-HHHHHHHHHGGGGS
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 45677788877777654
No 377
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=34.43 E-value=1.6e+02 Score=20.62 Aligned_cols=44 Identities=9% Similarity=0.071 Sum_probs=30.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 021583 109 QVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLD 152 (310)
Q Consensus 109 ~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~ 152 (310)
++|+--...|+..|...|.++++.+.-+=-++-..++++.|-..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s~ 72 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCSG 72 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHcc
Confidence 67777777777777777777777766666666666666666543
No 378
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=34.38 E-value=3.6e+02 Score=24.56 Aligned_cols=97 Identities=13% Similarity=0.090 Sum_probs=73.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHc
Q 021583 93 KALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNR 172 (310)
Q Consensus 93 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~ 172 (310)
..+..+.-.|+...|.+....+.+- ..-|...|..--..|...|++..|..=++..-+... .++.++--+-.-+...
T Consensus 160 ~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~--DnTe~~ykis~L~Y~v 236 (504)
T KOG0624|consen 160 QQLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ--DNTEGHYKISQLLYTV 236 (504)
T ss_pred HHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc--cchHHHHHHHHHHHhh
Confidence 3455556678889999999888876 356888888888999999999999877766555443 4445666667777889
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH
Q 021583 173 GMHEKMFEIFADMEELGVRPNV 194 (310)
Q Consensus 173 g~~~~a~~l~~~m~~~g~~p~~ 194 (310)
|+.+.++...++..+ ..||.
T Consensus 237 gd~~~sL~~iRECLK--ldpdH 256 (504)
T KOG0624|consen 237 GDAENSLKEIRECLK--LDPDH 256 (504)
T ss_pred hhHHHHHHHHHHHHc--cCcch
Confidence 999999998888776 45665
No 379
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=34.15 E-value=1.1e+02 Score=27.63 Aligned_cols=84 Identities=15% Similarity=0.049 Sum_probs=54.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 021583 131 NALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGML 210 (310)
Q Consensus 131 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 210 (310)
+-|.+.|.+++|..+|.+-... .|.+.++|..-..+|.+..++..|+.=.+......- .-...|.--..+-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHhhH
Confidence 4688999999999999876544 245678898999999999988877765555443210 1123344444444445555
Q ss_pred HHHHHHH
Q 021583 211 DKYEKLK 217 (310)
Q Consensus 211 ~~a~~l~ 217 (310)
.+|.+=.
T Consensus 182 ~EAKkD~ 188 (536)
T KOG4648|consen 182 MEAKKDC 188 (536)
T ss_pred HHHHHhH
Confidence 5554433
No 380
>PF05734 DUF832: Herpesvirus protein of unknown function (DUF832); InterPro: IPR008550 This entry contains BRRF2 from Epstein-Barr virus. This protein family is restricted to the gammaherpesvirus's; it's function is not known. The protein is phosphorylated and is associated with the viral tegument [].
Probab=34.09 E-value=1.5e+02 Score=24.97 Aligned_cols=27 Identities=7% Similarity=0.154 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 021583 161 FFDKMISIYYNRGMHEKMFEIFADMEE 187 (310)
Q Consensus 161 ~y~~li~~~~~~g~~~~a~~l~~~m~~ 187 (310)
.|+.++..|...+++.++...+...-.
T Consensus 17 ~w~~i~~~F~~~~~v~~~~~~l~r~f~ 43 (228)
T PF05734_consen 17 EWRNILSNFSTHGNVSATLRSLRRIFK 43 (228)
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHhc
Confidence 566666666666666666655555443
No 381
>cd08777 Death_RIP1 Death Domain of Receptor-Interacting Protein 1. Death domain (DD) found in Receptor-Interacting Protein 1 (RIP1) and related proteins. RIP kinases serve as essential sensors of cellular stress. Vertebrates contain several types containing a homologous N-terminal kinase domain and varying C-terminal domains. RIP1 harbors a C-terminal DD, which binds death receptors (DRs) including TNF receptor 1, Fas, TNF-related apoptosis-inducing ligand receptor 1 (TRAILR1), and TRAILR2. It also interacts with other DD-containing adaptor proteins such as TRADD and FADD. RIP1 plays a crucial role in determining a cell's fate, between survival or death, following exposure to stress signals. It is important in the signaling of NF-kappaB and MAPKs, and it links DR-associated signaling to reactive oxygen species (ROS) production. Abnormal RIP1 function may result in ROS accumulation affecting inflammatory responses, innate immunity, stress responses, and cell survival. In general, DDs ar
Probab=33.82 E-value=1.4e+02 Score=20.87 Aligned_cols=41 Identities=24% Similarity=0.101 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 021583 69 KEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQV 110 (310)
Q Consensus 69 ~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 110 (310)
.+.++.+|..|.++.- ....|...|+.++.++|+.+-+.++
T Consensus 43 ~eq~~~mL~~W~~r~g-~~~ATv~~L~~aL~~~~r~di~~~l 83 (86)
T cd08777 43 KEKVHQMLHKWKMKEG-SKGATVGKLAQALEGCIKPDLLVSL 83 (86)
T ss_pred HHHHHHHHHHHHHccC-CCCcHHHHHHHHHHHcchhhHHHHH
Confidence 3445555555554321 1113455555555555555544443
No 382
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=33.23 E-value=3.3e+02 Score=23.72 Aligned_cols=119 Identities=13% Similarity=0.018 Sum_probs=74.6
Q ss_pred HHHHH-hcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 021583 95 LKTLE-NEKDWKRIIQVTKWMLSKGQ----GRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIY 169 (310)
Q Consensus 95 i~~~~-~~~~~~~a~~~~~~m~~~g~----~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~ 169 (310)
+...| ..+..+.|.+.|......+. ..+...-..++....+.|+.++-..+++..... .+......++.++
T Consensus 136 ~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~----~~~~~k~~~l~aL 211 (324)
T PF11838_consen 136 LSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS----TSPEEKRRLLSAL 211 (324)
T ss_dssp HHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT----STHHHHHHHHHHH
T ss_pred HHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc----CCHHHHHHHHHhh
Confidence 55545 12235678888888776422 456666677788888888877766666666654 3345789999999
Q ss_pred HHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCH--HHHHHHHHh
Q 021583 170 YNRGMHEKMFEIFADMEELG-VRPNVSIVSMMGNAFQKLGML--DKYEKLKKK 219 (310)
Q Consensus 170 ~~~g~~~~a~~l~~~m~~~g-~~p~~~ty~~li~~~~~~g~~--~~a~~l~~~ 219 (310)
+...+.+...++++...... +++.. . ..++.++...+.. +.+.+++..
T Consensus 212 a~~~d~~~~~~~l~~~l~~~~v~~~d-~-~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 212 ACSPDPELLKRLLDLLLSNDKVRSQD-I-RYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp TT-S-HHHHHHHHHHHHCTSTS-TTT-H-HHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHcCCcccccHH-H-HHHHHHHhcCChhhHHHHHHHHHH
Confidence 99999999999999988754 55444 2 3444455534444 777777654
No 383
>KOG4414 consensus COP9 signalosome, subunit CSN8 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.17 E-value=45 Score=25.81 Aligned_cols=32 Identities=16% Similarity=0.054 Sum_probs=20.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 021583 192 PNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPP 223 (310)
Q Consensus 192 p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~ 223 (310)
|+...|...+-+|.-..+.+.|.-+|+++.|.
T Consensus 37 ~~dw~Ya~~L~~Yf~~dD~dnARfLWKRIP~A 68 (197)
T KOG4414|consen 37 HDDWPYAIHLAGYFLHDDCDNARFLWKRIPPA 68 (197)
T ss_pred CCcchHHHHHHHHHHhccchhHHHHHHhCCHH
Confidence 45556666666666666666666666665444
No 384
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=33.12 E-value=5.5e+02 Score=26.27 Aligned_cols=81 Identities=14% Similarity=0.169 Sum_probs=43.4
Q ss_pred HHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---C----------CCCHHHHHHHHHHHHhc
Q 021583 71 EVYGALDSFI-AWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKG---Q----------GRTMGTYFLLLNALAED 136 (310)
Q Consensus 71 ~~~~~~~~m~-~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~----------~p~~~ty~~ll~~~~~~ 136 (310)
...+.+++.. ..|+..+......+... ..|+..+++.++++....+ + ..|...+..+++++ ..
T Consensus 182 eIv~~L~~Il~~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL-~~ 258 (830)
T PRK07003 182 HIVSHLERILGEERIAFEPQALRLLARA--AQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDAL-AA 258 (830)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHH-Hc
Confidence 3444444433 34666666555444443 3577777777766544221 1 12333334444433 33
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 021583 137 GRLDEAEELWTKIFLDHL 154 (310)
Q Consensus 137 g~~~~A~~~~~~m~~~~~ 154 (310)
|+..+++.+++++...|.
T Consensus 259 ~d~~~~l~~~~~l~~~g~ 276 (830)
T PRK07003 259 GDGPEILAVADEMALRSL 276 (830)
T ss_pred CCHHHHHHHHHHHHHhCC
Confidence 677777777777777665
No 385
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.89 E-value=83 Score=21.78 Aligned_cols=26 Identities=8% Similarity=0.275 Sum_probs=21.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC
Q 021583 93 KALKTLENEKDWKRIIQVTKWMLSKG 118 (310)
Q Consensus 93 ~li~~~~~~~~~~~a~~~~~~m~~~g 118 (310)
+++..+.++.--++|++++++|.+.|
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 34566778888999999999999887
No 386
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=32.64 E-value=1e+02 Score=22.71 Aligned_cols=52 Identities=15% Similarity=0.205 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 021583 161 FFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDK 212 (310)
Q Consensus 161 ~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 212 (310)
.-..++..+...+.+-.|.++++.|.+.+...+..|.---|+.+.+.|-+.+
T Consensus 9 ~R~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~ 60 (120)
T PF01475_consen 9 QRLAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRK 60 (120)
T ss_dssp HHHHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEE
Confidence 4556777788888888899999999998888887666666777888887765
No 387
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=32.47 E-value=2.3e+02 Score=29.56 Aligned_cols=61 Identities=13% Similarity=0.161 Sum_probs=49.0
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 021583 134 AEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNV 194 (310)
Q Consensus 134 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~ 194 (310)
-....+.+++.+|..|...|+-......|-..-..|.+.+.+.+|.++|..=.++...|-.
T Consensus 89 ~~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~ 149 (974)
T KOG1166|consen 89 ELREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLE 149 (974)
T ss_pred HHHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHH
Confidence 3566788899999999998885455567888888888888899999998888877777754
No 388
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=32.26 E-value=1.2e+02 Score=22.06 Aligned_cols=46 Identities=20% Similarity=0.266 Sum_probs=24.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 021583 94 ALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRL 139 (310)
Q Consensus 94 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~ 139 (310)
++..+...+.+-.|.++++.+.+.+...+..|.=-.|+.+...|-+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 3444444445555666666666555555554444445555555544
No 389
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=32.16 E-value=5.4e+02 Score=25.89 Aligned_cols=87 Identities=11% Similarity=0.067 Sum_probs=58.9
Q ss_pred HHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------------ChHHHHHHHHHHHHH
Q 021583 105 KRIIQVTKWML-SKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEG------------TPRIFFDKMISIYYN 171 (310)
Q Consensus 105 ~~a~~~~~~m~-~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~------------~~~~~y~~li~~~~~ 171 (310)
++....+.... +.|+..+......++... .|++..|..+++++...+... .+......|+.++.
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~- 257 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGII- 257 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHH-
Confidence 44445554443 668888877777777655 589999999998876533111 12223555666655
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH
Q 021583 172 RGMHEKMFEIFADMEELGVRPNV 194 (310)
Q Consensus 172 ~g~~~~a~~l~~~m~~~g~~p~~ 194 (310)
.++...+++++++|...|+.+..
T Consensus 258 ~~d~~~al~~l~~L~~~G~d~~~ 280 (709)
T PRK08691 258 NQDGAALLAKAQEMAACAVGFDN 280 (709)
T ss_pred cCCHHHHHHHHHHHHHhCCCHHH
Confidence 58999999999999999886543
No 390
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=31.68 E-value=99 Score=20.32 Aligned_cols=51 Identities=12% Similarity=0.149 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 021583 85 EFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAED 136 (310)
Q Consensus 85 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~ 136 (310)
.|+...++.++..+++-.-.++++..++...+.|. .+..+|---+..+++.
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 35566788999999998889999999999998885 5677777777777664
No 391
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=31.60 E-value=1.6e+02 Score=24.95 Aligned_cols=59 Identities=10% Similarity=0.006 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 021583 127 FLLLNALAEDGRLDEAEELWTKIFLD----HLEGTPRIFFDKMISIYYNRGMHEKMFEIFADM 185 (310)
Q Consensus 127 ~~ll~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m 185 (310)
--|-.-|.+.|++++|.++|+.+... |=..+...+-..+..++.+.|+.+....+.-+|
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34455555556666666665554321 211122234555555555666666655554433
No 392
>smart00005 DEATH DEATH domain, found in proteins involved in cell death (apoptosis). Alpha-helical domain present in a variety of proteins with apoptotic functions. Some (but not all) of these domains form homotypic and heterotypic dimers.
Probab=31.33 E-value=1.7e+02 Score=19.90 Aligned_cols=38 Identities=16% Similarity=0.011 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 021583 69 KEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRII 108 (310)
Q Consensus 69 ~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 108 (310)
.+.+..++..|...+- ...+...|+.++.+.|..+-|.
T Consensus 46 ~~~~~~lL~~W~~~~g--~~at~~~L~~aL~~~~~~d~a~ 83 (88)
T smart00005 46 AEQSVQLLRLWEQREG--KNATLGTLLEALRKMGRDDAVE 83 (88)
T ss_pred HHHHHHHHHHHHHccc--hhhHHHHHHHHHHHcChHHHHH
Confidence 3445555555544321 1234555555555555544443
No 393
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=31.02 E-value=2.5e+02 Score=21.61 Aligned_cols=120 Identities=18% Similarity=0.199 Sum_probs=89.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCC
Q 021583 97 TLENEKDWKRIIQVTKWMLSKGQ--GRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGM 174 (310)
Q Consensus 97 ~~~~~~~~~~a~~~~~~m~~~g~--~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~ 174 (310)
.+...|+++.+...|.......- ......+......+...++.++|...+.+....... .....+..+-..+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD-DDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc-cchHHHHHhhHHHHHccc
Confidence 78899999999999999855221 123455555555678889999999999999887541 134578889999999999
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 175 HEKMFEIFADMEELGVRPN-VSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 175 ~~~a~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
.+.+...+....... |+ ...+..+...+...+..+.+...+++
T Consensus 218 ~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (291)
T COG0457 218 YEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEK 261 (291)
T ss_pred HHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHH
Confidence 999999999987643 33 44455555555577778888877765
No 394
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.61 E-value=5.4e+02 Score=25.39 Aligned_cols=81 Identities=10% Similarity=-0.013 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMIS 167 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~ 167 (310)
..-|..|-.+..+.+++..|.+-|..-+. |..|+-.+...|+-+.-..+-..-++.|. .|.-..
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~-------~N~AF~ 729 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK-------NNLAFL 729 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc-------cchHHH
Confidence 56799999999999999999999877554 46788888889998877777777777765 333344
Q ss_pred HHHHcCCHHHHHHHHHH
Q 021583 168 IYYNRGMHEKMFEIFAD 184 (310)
Q Consensus 168 ~~~~~g~~~~a~~l~~~ 184 (310)
+|...|++++..+++..
T Consensus 730 ~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 730 AYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHcCCHHHHHHHHHh
Confidence 67789999999888765
No 395
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=30.28 E-value=1.6e+02 Score=20.27 Aligned_cols=36 Identities=14% Similarity=0.024 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 021583 70 EEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRI 107 (310)
Q Consensus 70 ~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 107 (310)
+.++.+|..|.++.- ...|...|+.++.+.|+-+-+
T Consensus 45 eq~~~mL~~W~~r~g--~~at~~~L~~AL~~i~r~Di~ 80 (84)
T cd08317 45 QQAQAMLKLWLEREG--KKATGNSLEKALKKIGRDDIV 80 (84)
T ss_pred HHHHHHHHHHHHhcC--CcchHHHHHHHHHHcChHHHH
Confidence 445555555554421 124445555555555554443
No 396
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=30.12 E-value=3.4e+02 Score=22.97 Aligned_cols=73 Identities=15% Similarity=0.198 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 021583 141 EAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEE----LG-VRPNVSIVSMMGNAFQKLGMLDKYEK 215 (310)
Q Consensus 141 ~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~----~g-~~p~~~ty~~li~~~~~~g~~~~a~~ 215 (310)
.|.+-|+.-....+ -...---|-..|.+.|++++|.++|+.+.. .| ..+...+...+..|+.+.|+.+....
T Consensus 163 ~A~~~f~~~~~~R~---~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~ 239 (247)
T PF11817_consen 163 KAYEQFKKYGQNRM---ASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLT 239 (247)
T ss_pred HHHHHHHHhccchH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 45555554443222 112455677889999999999999999852 23 23455777888899999999988765
Q ss_pred H
Q 021583 216 L 216 (310)
Q Consensus 216 l 216 (310)
+
T Consensus 240 ~ 240 (247)
T PF11817_consen 240 T 240 (247)
T ss_pred H
Confidence 5
No 397
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=30.11 E-value=1.9e+02 Score=20.14 Aligned_cols=54 Identities=13% Similarity=0.111 Sum_probs=28.0
Q ss_pred HhcCCHHHHHHHHHHHH----HCCCCCC--HHHHHH--HHHHHHhcCCHHHHHHHHHHHHhc
Q 021583 99 ENEKDWKRIIQVTKWML----SKGQGRT--MGTYFL--LLNALAEDGRLDEAEELWTKIFLD 152 (310)
Q Consensus 99 ~~~~~~~~a~~~~~~m~----~~g~~p~--~~ty~~--ll~~~~~~g~~~~A~~~~~~m~~~ 152 (310)
.+.|++..|.+.+.... ..+.... ...+.. +.......|+.++|.+.+++..+.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46677777755554443 2222221 222222 233444557777777777766554
No 398
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=29.36 E-value=2.1e+02 Score=20.46 Aligned_cols=42 Identities=14% Similarity=0.095 Sum_probs=21.9
Q ss_pred cHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 021583 68 VKEEVYGALDSFIAW-ELEFPLITVKKALKTLENEKDWKRIIQVTK 112 (310)
Q Consensus 68 ~~~~~~~~~~~m~~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 112 (310)
..++++++|+.|.+. |. ..+++.|+.++.+++.-.-|..+-+
T Consensus 48 ~~Eq~~qmL~~W~~~~G~---~a~~~~Li~aLr~~~l~~~Ad~I~~ 90 (97)
T cd08316 48 TAEQKVQLLRAWYQSHGK---TGAYRTLIKTLRKAKLCTKADKIQD 90 (97)
T ss_pred hHHHHHHHHHHHHHHhCC---CchHHHHHHHHHHccchhHHHHHHH
Confidence 345566666666543 32 2345566666666555444444433
No 399
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=29.14 E-value=2.7e+02 Score=26.79 Aligned_cols=59 Identities=7% Similarity=0.066 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 021583 127 FLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRI---FFDKMISIYYNRGMHEKMFEIFADMEEL 188 (310)
Q Consensus 127 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~---~y~~li~~~~~~g~~~~a~~l~~~m~~~ 188 (310)
.-|+.-|.+.+++++|..++..|-=... ... +-+.+++.+.+..--++.+..++.....
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~---g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTM---GEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCcccc---HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 3455566666666666666665542211 112 3444455555555555555555555543
No 400
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=28.98 E-value=3.8e+02 Score=23.12 Aligned_cols=147 Identities=13% Similarity=0.075 Sum_probs=82.1
Q ss_pred cHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HhcCCHHHHH
Q 021583 68 VKEEVYGALDSFIAW-ELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNAL---AEDGRLDEAE 143 (310)
Q Consensus 68 ~~~~~~~~~~~m~~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~---~~~g~~~~A~ 143 (310)
..+++..+++.+... +-+ ...+-.-|..+.+.++.+.+.+++..|...- ......+..+++.+ .... ...|.
T Consensus 102 ~~~ka~~~l~~l~~e~~~~--~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~~i~~l~~~~-~~~a~ 177 (278)
T PF08631_consen 102 SVEKALNALRLLESEYGNK--PEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILHHIKQLAEKS-PELAA 177 (278)
T ss_pred HHHHHHHHHHHHHHhCCCC--cHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHHHHHHHHhhC-cHHHH
Confidence 344567777777544 322 3444455777777899999999999998662 22334445555444 4443 35666
Q ss_pred HHHHHHHhcCCCCChH-H-----HHHHHHHHHH----HcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHH-------HH
Q 021583 144 ELWTKIFLDHLEGTPR-I-----FFDKMISIYY----NRGMHEKMFEIFADMEEL-GVRPNVSIVSMMGNA-------FQ 205 (310)
Q Consensus 144 ~~~~~m~~~~~~~~~~-~-----~y~~li~~~~----~~g~~~~a~~l~~~m~~~-g~~p~~~ty~~li~~-------~~ 205 (310)
..++.+....+.+... . ....++..-. ...+++.+.+++....+. +.+.+..+-.++... +.
T Consensus 178 ~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~ 257 (278)
T PF08631_consen 178 FCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHY 257 (278)
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 7777666665543332 1 1112221110 111255555666654433 444455554444333 45
Q ss_pred hcCCHHHHHHHHH
Q 021583 206 KLGMLDKYEKLKK 218 (310)
Q Consensus 206 ~~g~~~~a~~l~~ 218 (310)
+.+++++|.++|+
T Consensus 258 ~~k~y~~A~~w~~ 270 (278)
T PF08631_consen 258 KAKNYDEAIEWYE 270 (278)
T ss_pred hhcCHHHHHHHHH
Confidence 6899999999975
No 401
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=28.33 E-value=1.7e+02 Score=20.16 Aligned_cols=57 Identities=12% Similarity=0.244 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 021583 139 LDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAF 204 (310)
Q Consensus 139 ~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 204 (310)
+..+..+++.+.+.++ .+..-|..+-. .....++|.+++......| ...|..+.+++
T Consensus 14 v~~v~~ilD~L~~~~V--it~e~~~~I~a---~~T~~~kar~Lld~l~~kG----~~A~~~F~~~L 70 (82)
T cd08330 14 VTNVDPILDKLHGKKV--ITQEQYSEVRA---EKTNQEKMRKLFSFVRSWG----ASCKDIFYQIL 70 (82)
T ss_pred HhhHHHHHHHHHHCCC--CCHHHHHHHHc---CCCcHHHHHHHHHHHHccC----HHHHHHHHHHH
Confidence 3355667777777776 44445555544 4466777777777776543 34455555554
No 402
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=28.25 E-value=3.7e+02 Score=24.01 Aligned_cols=74 Identities=15% Similarity=0.165 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----------cCCHH
Q 021583 142 AEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQK----------LGMLD 211 (310)
Q Consensus 142 A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~----------~g~~~ 211 (310)
=.++|+.|.+.++ .+.-.+|.-+.--+.+.=....+..+|+.+...... |..|+..||. .|++.
T Consensus 262 D~EL~~~L~~~~i-~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-----fd~Ll~iCcsmlil~Re~il~~DF~ 335 (370)
T KOG4567|consen 262 DEELWRHLEEKEI-HPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-----FDFLLYICCSMLILVRERILEGDFT 335 (370)
T ss_pred hHHHHHHHHhcCC-CccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh-----hHHHHHHHHHHHHHHHHHHHhcchH
Confidence 3689999999998 355567777777888888999999999999875444 6666666653 69999
Q ss_pred HHHHHHHhCC
Q 021583 212 KYEKLKKKYP 221 (310)
Q Consensus 212 ~a~~l~~~~~ 221 (310)
.-.++++...
T Consensus 336 ~nmkLLQ~yp 345 (370)
T KOG4567|consen 336 VNMKLLQNYP 345 (370)
T ss_pred HHHHHHhcCC
Confidence 9999998844
No 403
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=28.04 E-value=5.6e+02 Score=24.76 Aligned_cols=116 Identities=11% Similarity=0.027 Sum_probs=73.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHH
Q 021583 86 FPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKM 165 (310)
Q Consensus 86 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~l 165 (310)
+....|+.|+..+... +.+.-.++++++.. . + ...+..++++....|-..-..-+.+.+....+ .+...-..+
T Consensus 308 ~~~~~f~~lv~~lR~~-~~e~l~~l~~~~~~-~--~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~--~~~ea~~~~ 380 (574)
T smart00638 308 PAAAKFLRLVRLLRTL-SEEQLEQLWRQLYE-K--K-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKI--TPLEAAQLL 380 (574)
T ss_pred chHHHHHHHHHHHHhC-CHHHHHHHHHHHHh-C--C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC--CHHHHHHHH
Confidence 4566788888887766 57888999988765 1 1 67889999999999988777777777776665 332223333
Q ss_pred HHHH--HHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcC
Q 021583 166 ISIY--YNRGMHEKMFEIFADMEELGVRPNV-------SIVSMMGNAFQKLG 208 (310)
Q Consensus 166 i~~~--~~~g~~~~a~~l~~~m~~~g~~p~~-------~ty~~li~~~~~~g 208 (310)
.... .+.-..+-...+++-+....+++.. .+|.+|++-+|...
T Consensus 381 ~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~ 432 (574)
T smart00638 381 AVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNT 432 (574)
T ss_pred HHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCC
Confidence 3322 2334444444444444444566554 56667777555544
No 404
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=28.00 E-value=3.5e+02 Score=22.35 Aligned_cols=26 Identities=19% Similarity=0.059 Sum_probs=13.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 021583 127 FLLLNALAEDGRLDEAEELWTKIFLD 152 (310)
Q Consensus 127 ~~ll~~~~~~g~~~~A~~~~~~m~~~ 152 (310)
+.+++.+...|+++.|-++|.-+.+.
T Consensus 45 ~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 45 TDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 44555555555555555555555543
No 405
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=27.86 E-value=4.2e+02 Score=23.94 Aligned_cols=55 Identities=13% Similarity=0.044 Sum_probs=25.2
Q ss_pred hcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 021583 100 NEKDWKRIIQVTKWMLSK-GQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHL 154 (310)
Q Consensus 100 ~~~~~~~a~~~~~~m~~~-g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~ 154 (310)
+.|+..+|.+.|.++.+. .+..-.-....||.++..-.-..+...++.+--+...
T Consensus 287 klGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdisl 342 (556)
T KOG3807|consen 287 KLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISL 342 (556)
T ss_pred HhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 446666666666654432 1111112233455555555444444444444433333
No 406
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=27.58 E-value=5.9e+02 Score=24.92 Aligned_cols=190 Identities=12% Similarity=0.070 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHH-HcCCCCCHH--HHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHH-----HHHHHHHHHHhcCCH
Q 021583 69 KEEVYGALDSFI-AWELEFPLI--TVKKALKTLE-NEKDWKRIIQVTKWMLSKGQGRTMG-----TYFLLLNALAEDGRL 139 (310)
Q Consensus 69 ~~~~~~~~~~m~-~~~~~p~~~--~~~~li~~~~-~~~~~~~a~~~~~~m~~~g~~p~~~-----ty~~ll~~~~~~g~~ 139 (310)
...+.+.++... +..+.|... ++-.+...+. ...+++.|...+++-....-+++.. ....++..|.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 344566677766 556666433 4445555554 6789999999999765333333322 234567777777776
Q ss_pred HHHHHHHHHHHhcCCC--CChH-HHHHHH-HHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHh--cCCH
Q 021583 140 DEAEELWTKIFLDHLE--GTPR-IFFDKM-ISIYYNRGMHEKMFEIFADMEEL---GVRPNVSIVSMMGNAFQK--LGML 210 (310)
Q Consensus 140 ~~A~~~~~~m~~~~~~--~~~~-~~y~~l-i~~~~~~g~~~~a~~l~~~m~~~---g~~p~~~ty~~li~~~~~--~g~~ 210 (310)
. |....++..+.--. .... ..|.-+ +.-+...++...|.+.++..... ...|-...+-.++.+... .+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 6 99888876654221 0111 244444 33333347999999999888643 234445666667776553 4545
Q ss_pred HHHHHHHHhCCCCccchheeccCcccCChhhhhHhhhc----cCCChhhHHhhh
Q 021583 211 DKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSA----TEGKTNEVETTK 260 (310)
Q Consensus 211 ~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~----~~g~~~~a~~~~ 260 (310)
+++.+..+++.-....+ ........+...++..+++- ..|+...+...+
T Consensus 196 ~d~~~~l~~~~~~~~~~-q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L 248 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSL-QLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKL 248 (608)
T ss_pred hhHHHHHHHHHHHHhhc-ccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 56666655431111111 01111123455566655555 667766555554
No 407
>COG5210 GTPase-activating protein [General function prediction only]
Probab=27.25 E-value=5.5e+02 Score=24.43 Aligned_cols=48 Identities=19% Similarity=0.267 Sum_probs=33.5
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 021583 107 IIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHL 154 (310)
Q Consensus 107 a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~ 154 (310)
.-+++..|...|+....+++.-++..+.+.-.++.|..+|+.+.-.|.
T Consensus 361 ~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~ 408 (496)
T COG5210 361 DPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGS 408 (496)
T ss_pred HHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 345666667777777777777777777777777777777777666555
No 408
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=27.23 E-value=6.6e+02 Score=25.31 Aligned_cols=82 Identities=6% Similarity=0.029 Sum_probs=56.0
Q ss_pred HHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------------CCCHHHHHHHHHHHHhc
Q 021583 71 EVYGALDSFI-AWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQ-------------GRTMGTYFLLLNALAED 136 (310)
Q Consensus 71 ~~~~~~~~m~-~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-------------~p~~~ty~~ll~~~~~~ 136 (310)
.....+.... ..|+..+......++... .|++..+..++++....|. ..+......|+.++.+
T Consensus 182 eI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~- 258 (709)
T PRK08691 182 QVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN- 258 (709)
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc-
Confidence 3344444433 458888887777666654 5899999999987664331 1233344555666555
Q ss_pred CCHHHHHHHHHHHHhcCCC
Q 021583 137 GRLDEAEELWTKIFLDHLE 155 (310)
Q Consensus 137 g~~~~A~~~~~~m~~~~~~ 155 (310)
++...++.++++|...|..
T Consensus 259 ~d~~~al~~l~~L~~~G~d 277 (709)
T PRK08691 259 QDGAALLAKAQEMAACAVG 277 (709)
T ss_pred CCHHHHHHHHHHHHHhCCC
Confidence 8899999999999999984
No 409
>PRK09462 fur ferric uptake regulator; Provisional
Probab=26.90 E-value=2.9e+02 Score=21.18 Aligned_cols=64 Identities=16% Similarity=0.236 Sum_probs=44.2
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 021583 147 TKIFLDHLEGTPRIFFDKMISIYYNR-GMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDK 212 (310)
Q Consensus 147 ~~m~~~~~~~~~~~~y~~li~~~~~~-g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 212 (310)
+.+++.|++.. ..-..++..+... +.+-.|.++++.+.+.+...+..|.---|+.+...|-+.+
T Consensus 6 ~~l~~~glr~T--~qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~~ 70 (148)
T PRK09462 6 TALKKAGLKVT--LPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTR 70 (148)
T ss_pred HHHHHcCCCCC--HHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 44566677522 3345566666654 5688899999999998877777665556677888887754
No 410
>PF00531 Death: Death domain; InterPro: IPR000488 The death domain (DD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DD is related in sequence and structure to the death effector domain (DED, see IPR001875 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. DD bind each other forming oligomers. Mammals have numerous and diverse DD-containing proteins []. Within these proteins, the DD domains can be found in combination with other domains, including: CARDs, DEDs, ankyrin repeats (IPR002110 from INTERPRO), caspase-like folds, kinase domains, leucine zippers (IPR002158 from INTERPRO), leucine-rich repeats (LRR) (IPR001611 from INTERPRO), TIR domains (IPR000157 from INTERPRO), and ZU5 domains (IPR000906 from INTERPRO) []. Some DD-containing proteins are involved in the regulation of apoptosis and inflammation through their activation of caspases and NF-kappaB, which typically involves interactions with TNF (tumour necrosis factor) cytokine receptors [, ]. In humans, eight of the over 30 known TNF receptors contain DD in their cytoplasmic tails; several of these TNF receptors use caspase activation as a signalling mechanism. The DD mediates self-association of these receptors, thus giving the signal to downstream events that lead to apoptosis. Other DD-containing proteins, such as ankyrin, MyD88 and pelle, are probably not directly involved in cell death signalling. DD-containing proteins also have links to innate immunity, communicating with Toll family receptors through bipartite adapter proteins such as MyD88 [].; GO: 0005515 protein binding, 0007165 signal transduction; PDB: 3OQ9_L 3EZQ_F 1E41_A 1E3Y_A 2GF5_A 2OF5_L 3EWV_E 3G5B_A 3MOP_L 2A9I_A ....
Probab=26.84 E-value=1.6e+02 Score=19.69 Aligned_cols=40 Identities=20% Similarity=0.256 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 021583 69 KEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQV 110 (310)
Q Consensus 69 ~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 110 (310)
.+.+..+|..|... .....+...|+.++.+.|+.+-|..+
T Consensus 40 ~~~~~~~L~~W~~~--~~~~at~~~L~~aL~~~~~~d~~~~i 79 (83)
T PF00531_consen 40 REQTYEMLQRWRQR--EGPNATVDQLIQALRDIGRNDLAEKI 79 (83)
T ss_dssp HHHHHHHHHHHHHH--HGSTSSHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--cCCCCcHHHHHHHHHHCCcHHHHHHH
Confidence 34456666666655 11233455666666666655544443
No 411
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=26.83 E-value=2.6e+02 Score=20.62 Aligned_cols=87 Identities=9% Similarity=0.092 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHH-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCcccCChhhhhHhhhccCCCh
Q 021583 176 EKMFEIFADMEE-LGVRP-NVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSATEGKT 253 (310)
Q Consensus 176 ~~a~~l~~~m~~-~g~~p-~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~g~~ 253 (310)
+++.+.+..+.. .|++| ++.+=-++..++.....++. ...-...|...+..++ .|..
T Consensus 6 ~~~~~~L~~Lk~~tgi~~~Nil~R~A~~~SL~~~~~~~~--------------~~~~~d~g~e~~~~t~-------~Ge~ 64 (113)
T PF08870_consen 6 KKAKEQLKKLKRRTGITPWNILCRIAFCRSLEEPSIPSD--------------EDIKDDSGLELNWKTF-------TGEY 64 (113)
T ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHccCCCCCC--------------CccCCCCCeEEeeeee-------cCch
Confidence 567778888775 49999 66655555555544433322 2233445777888888 7888
Q ss_pred hhHHhhhchhhcCCCCCchhhhhhhhhhhhh
Q 021583 254 NEVETTKNPNESSEEPEAAANLNESLEETEA 284 (310)
Q Consensus 254 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 284 (310)
......+-.+.. |...+...+...+..+-+
T Consensus 65 ~~~~~~ll~q~~-g~~~d~~~l~~~~~~Hl~ 94 (113)
T PF08870_consen 65 DDIYEALLKQRY-GPELDDEELPKYFKLHLD 94 (113)
T ss_pred HHHHHHHHHHHh-CCCCCHHHHHHHHHHHHH
Confidence 888777666655 666677777777755554
No 412
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=25.77 E-value=4.4e+02 Score=22.87 Aligned_cols=144 Identities=13% Similarity=0.036 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 021583 69 KEEVYGALDSFIAWEL----EFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEE 144 (310)
Q Consensus 69 ~~~~~~~~~~m~~~~~----~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~ 144 (310)
.+.+.+.|+++...+. ..+......++....+.|+.+.-..+++..... .+...-..++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 4556788888877422 446666677777888888866656666555544 478888999999999999999999
Q ss_pred HHHHHHhcC-CCCChHHHHHHHHHHHHHcCCH--HHHHHHHHHHHH---CCCCCCHHHHHHHHHH----HHhcCCHHHHH
Q 021583 145 LWTKIFLDH-LEGTPRIFFDKMISIYYNRGMH--EKMFEIFADMEE---LGVRPNVSIVSMMGNA----FQKLGMLDKYE 214 (310)
Q Consensus 145 ~~~~m~~~~-~~~~~~~~y~~li~~~~~~g~~--~~a~~l~~~m~~---~g~~p~~~ty~~li~~----~~~~g~~~~a~ 214 (310)
+++.....+ +. +.. ...++.++...+.. +.+++.+..-.+ .....+......++.. ++...+.++..
T Consensus 223 ~l~~~l~~~~v~--~~d-~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~ 299 (324)
T PF11838_consen 223 LLDLLLSNDKVR--SQD-IRYVLAGLASSNPVGRDLAWEFFKENWDAIIKKFGTNSSALSRVIKSFAGNFSTEEQLDELE 299 (324)
T ss_dssp HHHHHHCTSTS---TTT-HHHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCHC-TTSHCCHHHHHCCCTT--SHHHHHHHH
T ss_pred HHHHHcCCcccc--cHH-HHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhccCCCHHHHHHHH
Confidence 999988864 42 222 34455555534433 666666554221 1122222233344443 44566677777
Q ss_pred HHHH
Q 021583 215 KLKK 218 (310)
Q Consensus 215 ~l~~ 218 (310)
++|+
T Consensus 300 ~f~~ 303 (324)
T PF11838_consen 300 EFFE 303 (324)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7764
No 413
>PRK09462 fur ferric uptake regulator; Provisional
Probab=25.59 E-value=3.1e+02 Score=21.03 Aligned_cols=61 Identities=18% Similarity=0.283 Sum_probs=31.2
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 021583 78 SFIAWELEFPLITVKKALKTLENE-KDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRL 139 (310)
Q Consensus 78 ~m~~~~~~p~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~ 139 (310)
.+.+.|++++..-. .++..+... +.+-.|.++++.+.+.+...+..|.=--|+.+...|-+
T Consensus 7 ~l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 34455666554432 334444443 34556777777776666554544433334555555544
No 414
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=25.34 E-value=4.8e+02 Score=23.08 Aligned_cols=140 Identities=11% Similarity=0.002 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 021583 69 KEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTK 148 (310)
Q Consensus 69 ~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~ 148 (310)
...+...|+......- -+...--.+..+|...|+.+.|..++..+-..--.........=|..+.+.....+...+-.+
T Consensus 150 ~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~ 228 (304)
T COG3118 150 FGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRR 228 (304)
T ss_pred hhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 3445666666554431 124556688999999999999999998865442222222223334555555555555555555
Q ss_pred HHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHH
Q 021583 149 IFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEEL--GVRPNVSIVSMMGNAFQKLGMLDKY 213 (310)
Q Consensus 149 m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~--g~~p~~~ty~~li~~~~~~g~~~~a 213 (310)
.-.. |.|...--.+-..|...|+.++|.+.+-.+.++ |.. |...=..|+..+.--|.-|.+
T Consensus 229 ~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 229 LAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred HHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCCHH
Confidence 4443 334446667788888999999998877666544 433 445556677766666655543
No 415
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=25.28 E-value=4.9e+02 Score=23.16 Aligned_cols=53 Identities=13% Similarity=0.097 Sum_probs=32.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 021583 131 NALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADM 185 (310)
Q Consensus 131 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~m 185 (310)
..|..+|.+.+|.++.++...-+ +.+...|-.||+.+...|+--.+.+-++.|
T Consensus 287 ~~yle~g~~neAi~l~qr~ltld--pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 287 RAYLEAGKPNEAIQLHQRALTLD--PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHcCChHHHHHHHHHHhhcC--hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 45556666666666666655443 345556666666666666666666665555
No 416
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=25.13 E-value=2.2e+02 Score=24.48 Aligned_cols=58 Identities=9% Similarity=0.054 Sum_probs=47.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCcc
Q 021583 168 IYYNRGMHEKMFEIFADMEEL-GVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKW 225 (310)
Q Consensus 168 ~~~~~g~~~~a~~l~~~m~~~-g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~ 225 (310)
.|....++...-.++..|... --.|+....+..|++|.+..+-..|...++.+.|+..
T Consensus 205 iCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL~~clPd~L 263 (293)
T KOG3036|consen 205 ICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAALRSCLPDQL 263 (293)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHhhCcchh
Confidence 444566777788888888754 4468999999999999999999999999999888843
No 417
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.00 E-value=6.2e+02 Score=24.26 Aligned_cols=87 Identities=14% Similarity=0.139 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHH-----------HHHHHH
Q 021583 103 DWKRIIQVTKWML-SKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDK-----------MISIYY 170 (310)
Q Consensus 103 ~~~~a~~~~~~m~-~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~-----------li~~~~ 170 (310)
..++..+.+.... +.|+..+..+...++.... |++..|...++++...+-.......+.. |++++
T Consensus 176 s~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~--GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al- 252 (504)
T PRK14963 176 TEEEIAGKLRRLLEAEGREAEPEALQLVARLAD--GAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAAL- 252 (504)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC--CCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHH-
Q ss_pred HcCCHHHHHHHHHHHHHCCCCC
Q 021583 171 NRGMHEKMFEIFADMEELGVRP 192 (310)
Q Consensus 171 ~~g~~~~a~~l~~~m~~~g~~p 192 (310)
..++.++|+.++++|...|..|
T Consensus 253 ~~~d~~~Al~~l~~Ll~~G~~~ 274 (504)
T PRK14963 253 AQGDAAEALSGAAQLYRDGFAA 274 (504)
T ss_pred HcCCHHHHHHHHHHHHHcCCCH
No 418
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.95 E-value=4e+02 Score=22.05 Aligned_cols=88 Identities=11% Similarity=0.136 Sum_probs=50.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 021583 130 LNALAEDGRLDEAEELWTKIFLDHLE-GTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLG 208 (310)
Q Consensus 130 l~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g 208 (310)
-+.++.+|++++|+.-++.-.....+ ....+.=--|-......|.+|+|+++++.....+.. ......--+.+...|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg 173 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcC
Confidence 45667778888888777765533110 001112223444566778888888887775543322 122233335577778
Q ss_pred CHHHHHHHHHh
Q 021583 209 MLDKYEKLKKK 219 (310)
Q Consensus 209 ~~~~a~~l~~~ 219 (310)
+-++|..-|++
T Consensus 174 ~k~~Ar~ay~k 184 (207)
T COG2976 174 DKQEARAAYEK 184 (207)
T ss_pred chHHHHHHHHH
Confidence 88887777654
No 419
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.89 E-value=1.4e+02 Score=20.72 Aligned_cols=30 Identities=20% Similarity=0.304 Sum_probs=24.8
Q ss_pred HHH-HHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 021583 161 FFD-KMISIYYNRGMHEKMFEIFADMEELGV 190 (310)
Q Consensus 161 ~y~-~li~~~~~~g~~~~a~~l~~~m~~~g~ 190 (310)
.|| +++..+.+|.-.++|+++++-|.+.|-
T Consensus 32 gy~PtV~D~L~rCdT~EEAlEii~yleKrGE 62 (98)
T COG4003 32 GYNPTVIDFLRRCDTEEEALEIINYLEKRGE 62 (98)
T ss_pred CCCchHHHHHHHhCcHHHHHHHHHHHHHhCC
Confidence 444 567788889999999999999998874
No 420
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=24.60 E-value=1.1e+02 Score=15.57 Aligned_cols=15 Identities=7% Similarity=0.401 Sum_probs=8.0
Q ss_pred CHHHHHHHHHHHHhc
Q 021583 138 RLDEAEELWTKIFLD 152 (310)
Q Consensus 138 ~~~~A~~~~~~m~~~ 152 (310)
+.+.|.++|+++...
T Consensus 2 ~~~~~r~i~e~~l~~ 16 (33)
T smart00386 2 DIERARKIYERALEK 16 (33)
T ss_pred cHHHHHHHHHHHHHH
Confidence 445555555555543
No 421
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=24.51 E-value=1.6e+02 Score=24.71 Aligned_cols=83 Identities=17% Similarity=0.131 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHCCCC-------CCHHHHHHHHHHHHhcCCH---------HHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 021583 104 WKRIIQVTKWMLSKGQG-------RTMGTYFLLLNALAEDGRL---------DEAEELWTKIFLDHLEGTPRIFFDKMIS 167 (310)
Q Consensus 104 ~~~a~~~~~~m~~~g~~-------p~~~ty~~ll~~~~~~g~~---------~~A~~~~~~m~~~~~~~~~~~~y~~li~ 167 (310)
.+.|..++.+|-...++ -...-|-.+-.+|++.|-+ +--.++++..++.|++..=...|..+|+
T Consensus 137 vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiID 216 (236)
T TIGR03581 137 IETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSIID 216 (236)
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceeccc
Confidence 56677777777644332 2467778888888888753 4456666777777764222236777776
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 021583 168 IYYNRGMHEKMFEIFADME 186 (310)
Q Consensus 168 ~~~~~g~~~~a~~l~~~m~ 186 (310)
--.-.-+.++..+++..++
T Consensus 217 k~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 217 KETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred cccCCCCHHHHHHHHHHhh
Confidence 6666667777777776654
No 422
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=24.36 E-value=5.5e+02 Score=23.47 Aligned_cols=58 Identities=19% Similarity=0.093 Sum_probs=44.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhc--CCHHHHHHHHHHHHhcC
Q 021583 95 LKTLENEKDWKRIIQVTKWMLSKGQGRTMG--TYFLLLNALAED--GRLDEAEELWTKIFLDH 153 (310)
Q Consensus 95 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--ty~~ll~~~~~~--g~~~~A~~~~~~m~~~~ 153 (310)
...+.+.+++..|.++|+.+... +.++.. .|..+..+|... -+..+|.+.|+......
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~ 199 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRD 199 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 34455789999999999999987 655554 567777888866 45678999999877653
No 423
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.24 E-value=5.9e+02 Score=23.74 Aligned_cols=95 Identities=14% Similarity=0.059 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHC---------CCCC
Q 021583 123 MGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRI-FFDKMISIYYNRGMHEKMFEIFADMEEL---------GVRP 192 (310)
Q Consensus 123 ~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~y~~li~~~~~~g~~~~a~~l~~~m~~~---------g~~p 192 (310)
...+.-+-+.|..+|+++.|.+.+-+.+.--......+ .|-.+|..-.-.|+|........+-.+. .+.+
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 46678888999999999999999999655422111222 5666777777788888877776665543 2334
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 021583 193 NVSIVSMMGNAFQKLGMLDKYEKLKKK 219 (310)
Q Consensus 193 ~~~ty~~li~~~~~~g~~~~a~~l~~~ 219 (310)
-..++..|.+-+.+ +...|.+.|-.
T Consensus 230 kl~C~agLa~L~lk--kyk~aa~~fL~ 254 (466)
T KOG0686|consen 230 KLKCAAGLANLLLK--KYKSAAKYFLL 254 (466)
T ss_pred chHHHHHHHHHHHH--HHHHHHHHHHh
Confidence 44555555554444 67777666643
No 424
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=24.07 E-value=3.3e+02 Score=24.39 Aligned_cols=23 Identities=26% Similarity=0.353 Sum_probs=11.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 021583 128 LLLNALAEDGRLDEAEELWTKIF 150 (310)
Q Consensus 128 ~ll~~~~~~g~~~~A~~~~~~m~ 150 (310)
.|++.|.++|.+++|+++....+
T Consensus 111 ~Lm~~ci~~g~y~eALel~~~~~ 133 (338)
T PF04124_consen 111 QLMDTCIRNGNYSEALELSAHVR 133 (338)
T ss_pred HHHHHHHhcccHhhHHHHHHHHH
Confidence 34555555555555555544333
No 425
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=23.69 E-value=5.5e+02 Score=23.24 Aligned_cols=86 Identities=19% Similarity=0.182 Sum_probs=57.8
Q ss_pred CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHh-----cC
Q 021583 85 EFPLI-TVKKALKTLENEKDWKRIIQVTKWMLSK---GQGRTMGTYFL--LLNALAEDGRLDEAEELWTKIFL-----DH 153 (310)
Q Consensus 85 ~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~ty~~--ll~~~~~~g~~~~A~~~~~~m~~-----~~ 153 (310)
+.++. ....++...-+.++.++|+++++++.+. --.|+.+.|.. +...+...|+..++.+++++.++ .+
T Consensus 71 kINplslvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~ 150 (380)
T KOG2908|consen 71 KINPLSLVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDG 150 (380)
T ss_pred ccChHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccC
Confidence 44443 3445555666678999999999998743 23577777754 45666688999999999998887 45
Q ss_pred CCCChHH-HHHHHHHHHHH
Q 021583 154 LEGTPRI-FFDKMISIYYN 171 (310)
Q Consensus 154 ~~~~~~~-~y~~li~~~~~ 171 (310)
+ +++.. .|..+=.-|-+
T Consensus 151 v-~~~Vh~~fY~lssqYyk 168 (380)
T KOG2908|consen 151 V-TSNVHSSFYSLSSQYYK 168 (380)
T ss_pred C-ChhhhhhHHHHHHHHHH
Confidence 5 23232 56665555543
No 426
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.68 E-value=7.2e+02 Score=24.54 Aligned_cols=76 Identities=9% Similarity=0.168 Sum_probs=48.7
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---C---------CCChHHHHHHHHHHHHHcCCHHHHHHHH
Q 021583 115 LSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDH---L---------EGTPRIFFDKMISIYYNRGMHEKMFEIF 182 (310)
Q Consensus 115 ~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~---~---------~~~~~~~y~~li~~~~~~g~~~~a~~l~ 182 (310)
.+.|+..+......++... .|++..|...++++.... + ...+...+..|+.+.. .++.++|+.++
T Consensus 194 ~~egi~i~~~al~~La~~s--~gdlr~al~~Lekl~~y~~~~It~~~V~~~l~~~~~~~iF~L~dai~-~~~~~~al~ll 270 (614)
T PRK14971 194 SKEGITAEPEALNVIAQKA--DGGMRDALSIFDQVVSFTGGNITYKSVIENLNILDYDYYFRLTDALL-AGKVSDSLLLF 270 (614)
T ss_pred HHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhccCCccHHHHHHHhCCCCHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 3567777766655555444 588888888887754221 1 0112223445555544 57899999999
Q ss_pred HHHHHCCCCCC
Q 021583 183 ADMEELGVRPN 193 (310)
Q Consensus 183 ~~m~~~g~~p~ 193 (310)
+++...|..|.
T Consensus 271 ~~Ll~~g~~~~ 281 (614)
T PRK14971 271 DEILNKGFDGS 281 (614)
T ss_pred HHHHHcCCCHH
Confidence 99998887765
No 427
>cd08311 Death_p75NR Death domain of p75 Neurotophin Receptor. Death Domain (DD) found in p75 neurotrophin receptor (p75NTR, NGFR, TNFRSF16). p75NTR binds members of the neurotrophin (NT) family including nerve growth factor (NGF), brain-derived neurotrophic factor (BDNF), and NT3, among others. It contains an NT-binding extracellular region that bears four cysteine-rich repeats, a transmembrane domain, and an intracellular DD. p75NTR plays roles in the immune, vascular, and nervous systems, and has been shown to promote cell death or survival, and to induce neurite outgrowth or collapse depending on its ligands and co-receptors. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptor
Probab=23.55 E-value=2.5e+02 Score=19.13 Aligned_cols=19 Identities=37% Similarity=0.142 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHhcCCHHHH
Q 021583 124 GTYFLLLNALAEDGRLDEA 142 (310)
Q Consensus 124 ~ty~~ll~~~~~~g~~~~A 142 (310)
.|...|+.++.+.|+.|-+
T Consensus 55 ATv~~L~~aL~~i~R~Di~ 73 (77)
T cd08311 55 ATLDALCTALRRIQREDIA 73 (77)
T ss_pred chHHHHHHHHHHcChHHHH
Confidence 4555555555555555444
No 428
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=23.50 E-value=9.4e+02 Score=25.83 Aligned_cols=52 Identities=8% Similarity=0.123 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 021583 161 FFDKMISIYYNRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYP 221 (310)
Q Consensus 161 ~y~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~~~ 221 (310)
.|.+...-+...+.+++|--.|+..-+ ..--+.+|..+|+|++|+.+-.++.
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~ 992 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLS 992 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhc
Confidence 344444444555666666555554321 1234566777777777777765543
No 429
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=23.45 E-value=2.2e+02 Score=18.43 Aligned_cols=46 Identities=13% Similarity=0.128 Sum_probs=18.9
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-----hcCCHHHHHHH
Q 021583 171 NRGMHEKMFEIFADMEELGVRPNVSIVSMMGNAFQ-----KLGMLDKYEKL 216 (310)
Q Consensus 171 ~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~-----~~g~~~~a~~l 216 (310)
+.|++=+|-++++++-..--.|....|..||...+ +.|+.+.|.++
T Consensus 11 n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred cCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 34555555555555443211223344444444332 34555554443
No 430
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=23.28 E-value=5.6e+02 Score=23.19 Aligned_cols=68 Identities=13% Similarity=0.189 Sum_probs=42.8
Q ss_pred CCHHHHHHH-HHHHH-hcCCHHHHHHHHHHHHhcCCCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 021583 121 RTMGTYFLL-LNALA-EDGRLDEAEELWTKIFLDHLEGTPR-IFFDKMISIYYNRGMHEKMFEIFADMEELG 189 (310)
Q Consensus 121 p~~~ty~~l-l~~~~-~~g~~~~A~~~~~~m~~~~~~~~~~-~~y~~li~~~~~~g~~~~a~~l~~~m~~~g 189 (310)
.|+.+|..- +..|+ +.|+..+|.++|+++.+.-- -.+. .....||.++....-+.....++....+-.
T Consensus 271 tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p-l~t~lniheNLiEalLE~QAYADvqavLakYDdis 341 (556)
T KOG3807|consen 271 TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP-LLTMLNIHENLLEALLELQAYADVQAVLAKYDDIS 341 (556)
T ss_pred cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 355566442 44444 56999999999988765421 0221 256778888887776666666666554433
No 431
>TIGR03184 DNA_S_dndE DNA sulfur modification protein DndE. This model describes the DndE protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=23.21 E-value=3e+02 Score=20.05 Aligned_cols=87 Identities=9% Similarity=0.029 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCccchheeccCcccCChhhhhHhhhccCCCh
Q 021583 176 EKMFEIFADMEEL-GVRP-NVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPAKPKYELDSATEGKT 253 (310)
Q Consensus 176 ~~a~~l~~~m~~~-g~~p-~~~ty~~li~~~~~~g~~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~g~~ 253 (310)
++|.+.+..++.. |++| |+.+=-++..++.....++. ...-...++..+.+++ .|.+
T Consensus 5 ~~a~~~L~~Lk~~Tgi~~~NilcR~A~~~SL~~~~~~~~--------------~~~~~d~~~E~~~~T~-------~Ge~ 63 (105)
T TIGR03184 5 QTAKDQLRRLKRRTGLTPWNILCRWAFCLSLEEGSTPGV--------------ADIKLDGNVEIDWYTF-------AGEY 63 (105)
T ss_pred HHHHHHHHHHhcccCCCcchHHHHHHHHHHHhcCCCCCc--------------cccCCCCCeEEEeeee-------cCch
Confidence 5678888888754 9999 66655555554444333322 2222346667888888 8888
Q ss_pred hhHHhhhchhh--cCCCCCchhhhhhhhhhhh
Q 021583 254 NEVETTKNPNE--SSEEPEAAANLNESLEETE 283 (310)
Q Consensus 254 ~~a~~~~~~m~--~~~~~p~~~~~~~ll~~~~ 283 (310)
+.....+-.+. ..+...+...+...+..+-
T Consensus 64 ~~i~~alLkq~~~~~~~~~d~e~l~~~~~lHl 95 (105)
T TIGR03184 64 GDIYLALLKQRCVADGPELDDESLAKALNLHV 95 (105)
T ss_pred HHHHHHHHHHHHHccCCCCCHHHHHHHHHHHH
Confidence 88776664433 5566667666666664433
No 432
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=22.95 E-value=2.9e+02 Score=19.68 Aligned_cols=29 Identities=10% Similarity=0.115 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 021583 161 FFDKMISIYYNRGMHEKMFEIFADMEELG 189 (310)
Q Consensus 161 ~y~~li~~~~~~g~~~~a~~l~~~m~~~g 189 (310)
|++.|+.++...|.-..|+++-+.+...|
T Consensus 66 t~~~L~~aL~~~~~~~~Ae~I~~~l~~~~ 94 (96)
T cd08315 66 SVNTLLDALEAIGLRLAKESIQDELISSG 94 (96)
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHHcC
Confidence 44555555555555444444444444433
No 433
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=22.91 E-value=3.1e+02 Score=25.18 Aligned_cols=97 Identities=22% Similarity=0.166 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCCHHHHHHH-----HHHHHhcCCHHHHHHHHHHHHhcCCCCCh
Q 021583 88 LITVKKALKTLENEKDWKRIIQVTKWML----SKGQGRTMGTYFLL-----LNALAEDGRLDEAEELWTKIFLDHLEGTP 158 (310)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~g~~p~~~ty~~l-----l~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 158 (310)
...|..|-..|.+..++++|.-+..+.. ..++.-=..-|..+ --++-..|++-.|.+.-++-.+..+..-|
T Consensus 162 lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gd 241 (518)
T KOG1941|consen 162 LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGD 241 (518)
T ss_pred eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence 3467788888888888888766554432 33332222334333 23556778877777777665544333233
Q ss_pred HH----HHHHHHHHHHHcCCHHHHHHHHHH
Q 021583 159 RI----FFDKMISIYYNRGMHEKMFEIFAD 184 (310)
Q Consensus 159 ~~----~y~~li~~~~~~g~~~~a~~l~~~ 184 (310)
.. ..-.+-.-|...|+.|.|+.-|+.
T Consensus 242 ra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 242 RALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred hHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 33 455566777889999998877665
No 434
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=22.89 E-value=7e+02 Score=24.10 Aligned_cols=156 Identities=11% Similarity=0.149 Sum_probs=85.7
Q ss_pred HhHHHHHHhcCCc-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 021583 56 AKLVTCIKGLSNV-KEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALA 134 (310)
Q Consensus 56 ~~~~~~l~~~~~~-~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~ 134 (310)
..|..++..++.. .+....++.++.. .+ ...+..++.+....|-.....-+.+++....+ ++...-..+..+..
T Consensus 311 ~~f~~lv~~lR~~~~e~l~~l~~~~~~---~~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~-~~~ea~~~~~~~~~ 385 (574)
T smart00638 311 AKFLRLVRLLRTLSEEQLEQLWRQLYE---KK-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKI-TPLEAAQLLAVLPH 385 (574)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 3444444444432 2334444555443 11 57889999999999987666666666665554 44444444544444
Q ss_pred hcCC-HHHHHHHHHHHHhc-CCCCCh------HHHHHHHHHHHHHcCCH------HHHHHHHHHHHHCCC-CCCHHHHHH
Q 021583 135 EDGR-LDEAEELWTKIFLD-HLEGTP------RIFFDKMISIYYNRGMH------EKMFEIFADMEELGV-RPNVSIVSM 199 (310)
Q Consensus 135 ~~g~-~~~A~~~~~~m~~~-~~~~~~------~~~y~~li~~~~~~g~~------~~a~~l~~~m~~~g~-~p~~~ty~~ 199 (310)
-... ..+.++.+.+|.+. .....+ ..+|..|++-+|..... ++..+.+.+...... .-|..--..
T Consensus 386 ~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 465 (574)
T smart00638 386 TARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQL 465 (574)
T ss_pred hhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheee
Confidence 4322 33445555555443 332222 24788888888876642 344444444332211 123333467
Q ss_pred HHHHHHhcCCHHHHHHH
Q 021583 200 MGNAFQKLGMLDKYEKL 216 (310)
Q Consensus 200 li~~~~~~g~~~~a~~l 216 (310)
.|.+++..|.......+
T Consensus 466 ~LkaLGN~g~~~~i~~l 482 (574)
T smart00638 466 YLKALGNAGHPSSIKVL 482 (574)
T ss_pred HHHhhhccCChhHHHHH
Confidence 88999999997765444
No 435
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=22.63 E-value=2.3e+02 Score=25.26 Aligned_cols=118 Identities=9% Similarity=-0.023 Sum_probs=63.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHhcCCCCChHH--
Q 021583 84 LEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELW-TKIFLDHLEGTPRI-- 160 (310)
Q Consensus 84 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~-~~m~~~~~~~~~~~-- 160 (310)
.+|+-.+..+.-..+...|--+...-.-.++. .| --...-..|..-..+...+++..... ++|++.++ |.+.+
T Consensus 219 fPpnkrs~E~Fak~Ft~agL~elvey~~~q~~-~~--a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nl-Pe~eVi~ 294 (412)
T KOG2297|consen 219 FPPNKRSVEHFAKYFTDAGLKELVEYHRNQQS-EG--ARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNL-PETEVIG 294 (412)
T ss_pred cCCcchhHHHHHHHHhHhhHHHHHHHHHHHHH-HH--HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCC-CCceEEe
Confidence 46666666666666666553222211111111 00 00122233444444555566665555 57777777 44442
Q ss_pred -HHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 021583 161 -FFDKMISIYYNRGM-HEKMFEIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYE 214 (310)
Q Consensus 161 -~y~~li~~~~~~g~-~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~ 214 (310)
.|..+|++---..+ -..|.+.++.++ +|.-|+.+++..|+.+..+
T Consensus 295 ivWs~iMsaveWnKkeelva~qalrhlK---------~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 295 IVWSGIMSAVEWNKKEELVAEQALRHLK---------QYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred eeHhhhhHHHhhchHHHHHHHHHHHHHH---------hhhHHHHHHhcCChHHHHH
Confidence 68888887544422 122444444443 5888999999999887653
No 436
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=22.50 E-value=1.6e+02 Score=21.54 Aligned_cols=45 Identities=20% Similarity=0.283 Sum_probs=21.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 021583 93 KALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDG 137 (310)
Q Consensus 93 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g 137 (310)
.++..+.+.+.+-.|.++++.+.+.+...+..|.=--|+.+.+.|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 444455555555556666666665555555433222334444433
No 437
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=22.41 E-value=4.8e+02 Score=22.04 Aligned_cols=101 Identities=15% Similarity=0.171 Sum_probs=66.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 021583 83 ELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGR---TMGTY--FLLLNALAEDGRLDEAEELWTKIFLDHLEGT 157 (310)
Q Consensus 83 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~ty--~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~ 157 (310)
.+.++..-+|.|+--|.-...+.+|-+.|.. ..|+.| |..++ ..-|....+.|++++|.+....+-..-++ .
T Consensus 21 ~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd-~ 97 (228)
T KOG2659|consen 21 KVSVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILD-T 97 (228)
T ss_pred ccCcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHc-c
Confidence 4456677788888888777777777776643 555555 44444 45688889999999999998887665553 3
Q ss_pred hH-HHHHHHH---HHHHHcCCHHHHHHHHHHHH
Q 021583 158 PR-IFFDKMI---SIYYNRGMHEKMFEIFADME 186 (310)
Q Consensus 158 ~~-~~y~~li---~~~~~~g~~~~a~~l~~~m~ 186 (310)
+. .-|..+- --..+.|..++|+++...=.
T Consensus 98 n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 98 NRELFFHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred chhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 32 2222221 22357788888888776644
No 438
>PRK11906 transcriptional regulator; Provisional
Probab=22.34 E-value=6.7e+02 Score=23.70 Aligned_cols=112 Identities=8% Similarity=0.016 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 021583 69 KEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTK 148 (310)
Q Consensus 69 ~~~~~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~ 148 (310)
..++.+.-+.-.+.+ +-|..+...+-.++.-.++++.|..+|+.-...+ .-...+|-..--...-+|+.++|.+.+++
T Consensus 320 ~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 320 AQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q ss_pred -HHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 021583 149 -IFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFAD 184 (310)
Q Consensus 149 -m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~~ 184 (310)
++-.-.+ .-...--..|..|+ ....++|.++|..
T Consensus 398 alrLsP~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 432 (458)
T PRK11906 398 SLQLEPRR-RKAVVIKECVDMYV-PNPLKNNIKLYYK 432 (458)
T ss_pred HhccCchh-hHHHHHHHHHHHHc-CCchhhhHHHHhh
No 439
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.88 E-value=7.8e+02 Score=24.33 Aligned_cols=81 Identities=17% Similarity=0.177 Sum_probs=51.7
Q ss_pred HHHHHHHH-HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------------CCCHHHHHHHHHHHHhcC
Q 021583 72 VYGALDSF-IAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQ-------------GRTMGTYFLLLNALAEDG 137 (310)
Q Consensus 72 ~~~~~~~m-~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-------------~p~~~ty~~ll~~~~~~g 137 (310)
....+... .+.|+..+......++.. ..|++..++.++++....|- ..+......+++++.. |
T Consensus 188 i~~~L~~i~~~egi~ie~~AL~~La~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~~-~ 264 (618)
T PRK14951 188 VLEHLTQVLAAENVPAEPQALRLLARA--ARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALAQ-G 264 (618)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHHc-C
Confidence 33444443 345777777776666653 45888888888876553331 1233333445555554 7
Q ss_pred CHHHHHHHHHHHHhcCCC
Q 021583 138 RLDEAEELWTKIFLDHLE 155 (310)
Q Consensus 138 ~~~~A~~~~~~m~~~~~~ 155 (310)
+...+++++++|.+.|..
T Consensus 265 d~~~al~~l~~l~~~G~~ 282 (618)
T PRK14951 265 DGRTVVETADELRLNGLS 282 (618)
T ss_pred CHHHHHHHHHHHHHcCCC
Confidence 889999999999988873
No 440
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=21.83 E-value=8.9e+02 Score=24.95 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=19.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 021583 164 KMISIYYNRGMHEKMFEIFADMEELGVRPN 193 (310)
Q Consensus 164 ~li~~~~~~g~~~~a~~l~~~m~~~g~~p~ 193 (310)
.++.+.. .++...++.+++++.+.|..|.
T Consensus 253 ~lidAL~-~~D~a~al~~l~~Li~~G~dp~ 281 (824)
T PRK07764 253 EAVDALA-AGDGAALFGTVDRVIEAGHDPR 281 (824)
T ss_pred HHHHHHH-cCCHHHHHHHHHHHHHcCCCHH
Confidence 4555544 5677778888888777776543
No 441
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=21.76 E-value=2.8e+02 Score=19.17 Aligned_cols=33 Identities=21% Similarity=0.232 Sum_probs=16.6
Q ss_pred CCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCC
Q 021583 137 GRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGM 174 (310)
Q Consensus 137 g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~ 174 (310)
.+.++|.++++.+..+|- ..|..+..++-..|.
T Consensus 44 tr~~q~~~LLd~L~~RG~-----~AF~~F~~aL~~~~~ 76 (84)
T cd08326 44 SRRDQARQLLIDLETRGK-----QAFPAFLSALRETGQ 76 (84)
T ss_pred CHHHHHHHHHHHHHhcCH-----HHHHHHHHHHHhcCc
Confidence 345555555555555543 245555555544443
No 442
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=21.70 E-value=5.9e+02 Score=22.82 Aligned_cols=57 Identities=12% Similarity=0.109 Sum_probs=32.0
Q ss_pred HcCCHHHHHH-HHHHHHHCCCCCCH----HHHHHHHHHHHhcCCH----HHHHHHHHhCCCCccchh
Q 021583 171 NRGMHEKMFE-IFADMEELGVRPNV----SIVSMMGNAFQKLGML----DKYEKLKKKYPPPKWEYR 228 (310)
Q Consensus 171 ~~g~~~~a~~-l~~~m~~~g~~p~~----~ty~~li~~~~~~g~~----~~a~~l~~~~~p~~~~~~ 228 (310)
+...+++... +-++|+..++ |+. ..|..++++---...- +.|.+.++..-|-..++.
T Consensus 267 ~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkeelva~qalrhlK~yaPLL~af~ 332 (412)
T KOG2297|consen 267 EEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEELVAEQALRHLKQYAPLLAAFC 332 (412)
T ss_pred cCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHHHHHHHHHHHHHhhhHHHHHHh
Confidence 3444555443 4566777776 454 6788888876544332 245555555555544444
No 443
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=21.45 E-value=2.9e+02 Score=19.21 Aligned_cols=53 Identities=11% Similarity=0.147 Sum_probs=32.0
Q ss_pred HhcCCHHHHHHHHHHHH----hcCCCCCh--H--HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 021583 134 AEDGRLDEAEELWTKIF----LDHLEGTP--R--IFFDKMISIYYNRGMHEKMFEIFADMEE 187 (310)
Q Consensus 134 ~~~g~~~~A~~~~~~m~----~~~~~~~~--~--~~y~~li~~~~~~g~~~~a~~l~~~m~~ 187 (310)
.+.|++.+|.+-+.+.. ..+.. .. . ...-.+...+...|+.++|.+.+++-.+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~-~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNS-SSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 46788888855544443 33331 10 1 1222344556678999999999988764
No 444
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=21.34 E-value=9.1e+02 Score=24.88 Aligned_cols=78 Identities=9% Similarity=0.168 Sum_probs=43.1
Q ss_pred HHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 021583 105 KRIIQVTKWML-SKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFA 183 (310)
Q Consensus 105 ~~a~~~~~~m~-~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l~~ 183 (310)
+...+++.++. +.|+..+......++... .|++..++..++++... . ....+++..+... +.....+...++++
T Consensus 182 ~~l~~~L~~il~~EGv~id~eal~lLa~~s--gGdlR~Al~eLEKLia~-~-~~~~IT~e~V~al-lg~~~~~~I~~lid 256 (824)
T PRK07764 182 EVMRGYLERICAQEGVPVEPGVLPLVIRAG--GGSVRDSLSVLDQLLAG-A-GPEGVTYERAVAL-LGVTDSALIDEAVD 256 (824)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhh-c-CCCCCCHHHHHHH-hcCCCHHHHHHHHH
Confidence 34444444443 457777766666555444 47888888888887632 1 1222455554443 33445555555666
Q ss_pred HHHH
Q 021583 184 DMEE 187 (310)
Q Consensus 184 ~m~~ 187 (310)
.+..
T Consensus 257 AL~~ 260 (824)
T PRK07764 257 ALAA 260 (824)
T ss_pred HHHc
Confidence 5553
No 445
>COG0819 TenA Putative transcription activator [Transcription]
Probab=21.29 E-value=4.9e+02 Score=21.77 Aligned_cols=94 Identities=16% Similarity=0.166 Sum_probs=54.0
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-----------HHHHHHHhcCCCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 021583 113 WMLSKGQGRTMGTYFLLLNALAEDGRLDEAE-----------ELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEI 181 (310)
Q Consensus 113 ~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~-----------~~~~~m~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~l 181 (310)
++.+....|....|+..|...+..|++.+.. ++.+++.+.... .+...|-..|+.|+...-.+.+..+
T Consensus 99 ~~~~~~~~~~~~aYt~ym~~~~~~g~~~~~~aAl~PC~~~Y~eig~~~~~~~~~-~~~~~Y~~Wi~~Y~s~ef~~~v~~~ 177 (218)
T COG0819 99 ELLKTEPSPANKAYTRYLLDTAYSGSFAELLAALLPCLWGYAEIGKRLKAKPRA-SPNPPYQEWIDTYASEEFQEAVEEL 177 (218)
T ss_pred HHHhcCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcccc-CCCCcHHHHHHHcCCHHHHHHHHHH
Confidence 3445556788999999999999999987653 233444444332 2335799999998854433334444
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc
Q 021583 182 FADMEELGVRPNVSIVSMMGNAFQKL 207 (310)
Q Consensus 182 ~~~m~~~g~~p~~~ty~~li~~~~~~ 207 (310)
.+.+.+..-.-+..-+.-|...+...
T Consensus 178 ~~~ld~~~~~~~~~~~~~l~~iF~~s 203 (218)
T COG0819 178 EALLDSLAENSSEEELEKLKQIFLTA 203 (218)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 44433333333333344444444443
No 446
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=21.27 E-value=2.2e+02 Score=25.14 Aligned_cols=44 Identities=14% Similarity=0.064 Sum_probs=21.0
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHH
Q 021583 170 YNRGMHEKMFEIFADMEELGVRPNV-------SIVSMMGNAFQKLGMLDKY 213 (310)
Q Consensus 170 ~~~g~~~~a~~l~~~m~~~g~~p~~-------~ty~~li~~~~~~g~~~~a 213 (310)
++.+++++|+..+.+...+|+..|. .|..-+...|.+.|+....
T Consensus 14 v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l 64 (421)
T COG5159 14 VKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSL 64 (421)
T ss_pred hhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchH
Confidence 4445555555555555555544433 2233444445555555443
No 447
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=20.49 E-value=4e+02 Score=20.41 Aligned_cols=67 Identities=9% Similarity=-0.098 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 021583 87 PLITVKKALKTLENEK--DWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDH 153 (310)
Q Consensus 87 ~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~ 153 (310)
+..-|++=-.-|.... +--+..+.++......+.|+......-+.+|-+-+|+..|..+|+-++.+-
T Consensus 46 t~EEfd~ry~~yf~r~~iD~wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~ 114 (149)
T KOG4077|consen 46 TAEEFDARYEKYFNRPEIDGWEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC 114 (149)
T ss_pred cHHHHHHHHHHHcCcccchHHHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc
Confidence 3444444444444322 233466677777788899999999999999999999999999999988753
No 448
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=20.42 E-value=3e+02 Score=24.60 Aligned_cols=88 Identities=14% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh----CCCCccchheeccCcccCChhhhhHhhhc-cCCChhh
Q 021583 181 IFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKK----YPPPKWEYRYIKGKRVRIPAKPKYELDSA-TEGKTNE 255 (310)
Q Consensus 181 l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~----~~p~~~~~~~~~~~~~~~~~~~~~~li~~-~~g~~~~ 255 (310)
+-....+.|++.+......|+..+. |+...+..-+++ ......+...+...-........--++++ ..|+..+
T Consensus 149 i~~~~~~~~l~i~~~a~~~L~~~~~--~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~~~~f~l~dail~g~~~~ 226 (334)
T COG1466 149 IKKRAKELGLKIDQEAIQLLLEALG--GNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEFNIFDLADALLKGDVKK 226 (334)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhC--CcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHhccccCCHHHHHHHHHCCCHHH
Q ss_pred HHhhhchhhcCCCCC
Q 021583 256 VETTKNPNESSEEPE 270 (310)
Q Consensus 256 a~~~~~~m~~~~~~p 270 (310)
|...+..+...|.+|
T Consensus 227 a~~~l~~L~~~ge~p 241 (334)
T COG1466 227 ALRLLRDLLLEGEEP 241 (334)
T ss_pred HHHHHHHHHHcCCcH
No 449
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.33 E-value=8.4e+02 Score=24.11 Aligned_cols=87 Identities=13% Similarity=0.107 Sum_probs=57.9
Q ss_pred HHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------------ChHHHHHHHHHHHHH
Q 021583 105 KRIIQVTKW-MLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEG------------TPRIFFDKMISIYYN 171 (310)
Q Consensus 105 ~~a~~~~~~-m~~~g~~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~------------~~~~~y~~li~~~~~ 171 (310)
++..+.+.. +.+.|+..+......++. ...|++..|+.++++....+-.. .+......++.++.
T Consensus 186 eei~~~L~~i~~~egi~ie~~AL~~La~--~s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~- 262 (618)
T PRK14951 186 ETVLEHLTQVLAAENVPAEPQALRLLAR--AARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALA- 262 (618)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHH-
Confidence 344444444 346788888777777776 34589999999988765443211 12223445566655
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH
Q 021583 172 RGMHEKMFEIFADMEELGVRPNV 194 (310)
Q Consensus 172 ~g~~~~a~~l~~~m~~~g~~p~~ 194 (310)
.|+...+++++++|.+.|..|..
T Consensus 263 ~~d~~~al~~l~~l~~~G~~~~~ 285 (618)
T PRK14951 263 QGDGRTVVETADELRLNGLSAAS 285 (618)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHH
Confidence 58999999999999999887653
No 450
>PF08771 Rapamycin_bind: Rapamycin binding domain; InterPro: IPR009076 Rapamycin and FK506 are potent immunosuppressive agents that bind to the FK506-binding protein (FKBP12), inhibiting its peptidyl-prolyl isomerase activity. The rapamycin-FKBP12 complex can then bind to and inhibit the FKBP12-rapamycin-associated protein (FRAP) in humans and RAFT1 in rats, causing cell-cycle arrest []. The FK506-FKBP12 complex cannot bind FRAP, but can bind to and inhibit calcineurin. Rapamycin is able to bind to two proteins, FKBP12 and FRAP, by simultaneously occupying two hydrophobic binding pockets, thereby linking these two proteins together to form a dimer []. The structure of the FKBP12-rapamycin-binding domain of FRAP consists of a core bundle of four helices arranged up-and-down in a left-handed twist. FRAP has been shown to interact in vitro with CLIP-170, a protein involved in microtubule organisation and function []. FRAP is thought to act as a kinase to phosphorylate CLIP-170, thereby regulating its binding to microtubules. FRAP is also thought to cooperate with p85/p110 phosphatidylinositol 3-kinase (PI3K) to induce the activation of the serine/threonine kinase p70 S6 kinase (p70S6K), which in turn phosphorylates the 40S ribosomal protein S6, thereby altering the translation of ribosomal proteins and translation elongation factors [].; GO: 0016772 transferase activity, transferring phosphorus-containing groups; PDB: 2NPU_A 2RSE_B 4FAP_B 1AUE_A 2GAQ_A 1FAP_B 2FAP_B 3FAP_B 1NSG_B.
Probab=20.24 E-value=3.4e+02 Score=19.48 Aligned_cols=77 Identities=16% Similarity=0.126 Sum_probs=44.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChH-HHHHHHHHHH
Q 021583 92 KKALKTLENEKDWKRIIQVTKWMLSKGQ-GRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPR-IFFDKMISIY 169 (310)
Q Consensus 92 ~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~y~~li~~~ 169 (310)
.-....|...++++...++++.+.+.-- .|.+..=...+..|++ ++.+|.+.+++-.+.+-. .+. ..|+.+-..|
T Consensus 18 e~As~~y~~~~n~~~m~~~L~pLh~~l~k~PeT~~E~~F~~~fg~--~L~~A~~~~~~y~~t~~~-~~l~~aW~~y~~v~ 94 (100)
T PF08771_consen 18 EEASRLYFGENNVEKMFKILEPLHEMLEKGPETLREVSFAQAFGR--DLQEAREWLKRYERTGDE-TDLNQAWDIYYQVY 94 (100)
T ss_dssp HHHHHHHHTTT-HHHHHHHHHHHHHHHHHS-SSHHHHHHHHHHHH--HHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHHHHHHHhhhCCH-hhHHHHHHHHHHHH
Confidence 3345566677888887777765442211 4776666777777776 688888888877766541 111 2455555554
Q ss_pred HH
Q 021583 170 YN 171 (310)
Q Consensus 170 ~~ 171 (310)
.+
T Consensus 95 ~~ 96 (100)
T PF08771_consen 95 RR 96 (100)
T ss_dssp HH
T ss_pred HH
Confidence 43
Done!