BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021584
         (310 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3QZU|A Chain A, Crystal Structure Of Bacillus Subtilis Lipase A 7-Fold
           Mutant; The Outcome Of Directed Evolution Towards
           Thermostability
 pdb|3QZU|B Chain B, Crystal Structure Of Bacillus Subtilis Lipase A 7-Fold
           Mutant; The Outcome Of Directed Evolution Towards
           Thermostability
          Length = 181

 Score = 29.3 bits (64), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 14/110 (12%)

Query: 115 YWDLSNAQFDNGPEPSHEFYIIVVVDS-------VLSLFIGDMEDEQSVKRLKSGFPVAK 167
           +WD +   ++NGP  S   ++  V+D        +++  +G       +K L  G  VA 
Sbjct: 41  FWDKTGTNYNNGPVLSR--FVQKVLDETGAKKVDIVAHSMGGANTLYYIKNLDGGNKVAN 98

Query: 168 FSLVSRCEQFSGRGALCSS----KVQFCDA-GTAHDILIKCSGEEDGSRN 212
              +    + +   AL  +    K+ +     +A DI++ C    DG+RN
Sbjct: 99  VVTLGGANRLTTGDALPGTDPNQKILYTSIYSSADDIVMNCLSRLDGARN 148


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.135    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,519,338
Number of Sequences: 62578
Number of extensions: 393444
Number of successful extensions: 621
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 620
Number of HSP's gapped (non-prelim): 1
length of query: 310
length of database: 14,973,337
effective HSP length: 99
effective length of query: 211
effective length of database: 8,778,115
effective search space: 1852182265
effective search space used: 1852182265
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)