BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021584
         (310 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P45359|THLA_CLOAB Acetyl-CoA acetyltransferase OS=Clostridium acetobutylicum (strain
           ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
           GN=thlA PE=1 SV=1
          Length = 392

 Score = 36.6 bits (83), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 22/127 (17%)

Query: 127 PEPSHEFYIIVVVDSVLSLFIGDMEDEQSVKRLKSGFPVAKFSLVSRCEQFSGRGA-LCS 185
           PE  +E    V++ +VL   +G     Q+    K+G PV   ++     +  G G    S
Sbjct: 45  PEDVNE----VILGNVLQAGLGQNPARQA--SFKAGLPVEIPAMT--INKVCGSGLRTVS 96

Query: 186 SKVQFCDAGTAHDILIKCSGEEDGSRNPVLSVCIDNKKIFQVKRLRWNFRGNQTMFLDGL 245
              Q   AG A D++I   G E+ SR P L+              RW +R     F+D +
Sbjct: 97  LAAQIIKAGDA-DVII-AGGMENMSRAPYLA-----------NNARWGYRMGNAKFVDEM 143

Query: 246 LVDMMWD 252
           + D +WD
Sbjct: 144 ITDGLWD 150


>sp|A9BUL6|RUVC_DELAS Crossover junction endodeoxyribonuclease RuvC OS=Delftia
           acidovorans (strain DSM 14801 / SPH-1) GN=ruvC PE=3 SV=1
          Length = 182

 Score = 32.7 bits (73), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 11/122 (9%)

Query: 69  GFAINVCVDGNVSAYASPSKFHVNSHQLRDSKGSKTFHSCNSRVEVYWD-LSNAQFDNGP 127
           GF + + VDG+  AY +          L D  G         R+++ +D +S       P
Sbjct: 14  GFGV-IDVDGHRLAYVASGTIRTTGIALGDLPG---------RLKLLFDGISEVASRYQP 63

Query: 128 EPSHEFYIIVVVDSVLSLFIGDMEDEQSVKRLKSGFPVAKFSLVSRCEQFSGRGALCSSK 187
           + S    + V V+   +L +G          + +G PVA+++ +   +  +G G    S+
Sbjct: 64  DTSAVEIVFVNVNPQSTLLLGQARGAALTALVNAGLPVAEYTALQMKKAMTGHGRAAKSQ 123

Query: 188 VQ 189
           +Q
Sbjct: 124 IQ 125


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.135    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,647,792
Number of Sequences: 539616
Number of extensions: 4918615
Number of successful extensions: 7912
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 7912
Number of HSP's gapped (non-prelim): 2
length of query: 310
length of database: 191,569,459
effective HSP length: 117
effective length of query: 193
effective length of database: 128,434,387
effective search space: 24787836691
effective search space used: 24787836691
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)