Query 021584
Match_columns 310
No_of_seqs 121 out of 149
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 04:07:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021584.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021584hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05910 DUF868: Plant protein 100.0 2E-118 4E-123 837.0 32.4 269 35-308 1-274 (274)
2 cd00110 LamG Laminin G domain; 90.3 2.9 6.3E-05 34.0 9.2 81 130-246 45-127 (151)
3 PF05910 DUF868: Plant protein 82.9 1.5 3.2E-05 42.5 4.0 36 94-129 190-225 (274)
4 smart00282 LamG Laminin G doma 66.6 59 0.0013 26.2 8.9 29 192-227 60-88 (135)
5 PF02210 Laminin_G_2: Laminin 61.9 18 0.00039 28.1 4.8 47 192-245 52-101 (128)
6 KOG0273 Beta-transducin family 51.5 31 0.00066 36.2 5.6 54 227-287 279-332 (524)
7 PF06905 FAIM1: Fas apoptotic 49.5 72 0.0016 29.2 7.1 43 193-243 14-58 (177)
8 PF14099 Polysacc_lyase: Polys 45.4 33 0.00072 30.6 4.3 36 192-229 150-185 (224)
9 PF06439 DUF1080: Domain of Un 43.9 49 0.0011 28.0 5.0 34 191-231 124-157 (185)
10 COG0139 HisI Phosphoribosyl-AM 42.7 98 0.0021 26.5 6.4 62 131-205 16-83 (111)
11 PF05506 DUF756: Domain of unk 34.0 1.2E+02 0.0025 23.7 5.3 16 103-118 49-65 (89)
12 PHA00514 dsDNA binding protein 33.5 81 0.0017 26.2 4.4 30 136-165 19-55 (98)
13 KOG0289 mRNA splicing factor [ 31.7 41 0.00089 35.1 3.0 46 112-158 370-426 (506)
14 PRK00051 hisI phosphoribosyl-A 30.0 1.9E+02 0.0042 25.2 6.4 62 131-205 12-79 (125)
15 TIGR02148 Fibro_Slime fibro-sl 29.3 51 0.0011 27.2 2.6 17 212-228 27-43 (90)
16 PF05506 DUF756: Domain of unk 27.4 1.2E+02 0.0027 23.6 4.5 35 224-258 35-73 (89)
17 PRK12322 NADH dehydrogenase su 26.7 40 0.00086 33.7 1.9 31 214-244 23-54 (366)
18 smart00210 TSPN Thrombospondin 20.5 1.4E+02 0.003 26.3 3.9 36 192-235 115-150 (184)
19 COG3427 Carbon monoxide dehydr 20.1 1.9E+02 0.004 25.8 4.5 55 182-237 56-111 (146)
No 1
>PF05910 DUF868: Plant protein of unknown function (DUF868); InterPro: IPR008586 This family consists of several hypothetical proteins from plants. The function of this family is unknown.
Probab=100.00 E-value=1.9e-118 Score=837.00 Aligned_cols=269 Identities=46% Similarity=0.843 Sum_probs=248.4
Q ss_pred CCCCceEEEEEEeEecCCcceEEEEEecccCCCCceEEEEeeCCCCcccCCCccccccccceeeccCceeeEecCceeEE
Q 021584 35 PSIPNSVSCIYKARLSPQKRLLVTLTWCSNFIGQGFAINVCVDGNVSAYASPSKFHVNSHQLRDSKGSKTFHSCNSRVEV 114 (310)
Q Consensus 35 ~s~q~~vT~vY~~~ls~~~~~litvTWsk~~~g~~L~v~v~~~~~~~~~~~~~k~~~kpw~fwkkkGsK~f~~~~~~V~v 114 (310)
|++||+|||||||+| .+++++||||||||+|||||+|+|+++... .+++||++++||+||||||||+|++++++|+|
T Consensus 1 ~s~q~~vT~vY~~~l-~g~~~litvTWsk~~~g~~Lsv~v~~~~~~--~~~~~k~~~~p~~fwkkkGsKsf~~~~~~v~v 77 (274)
T PF05910_consen 1 PSPQNSVTCVYQTKL-SGKPRLITVTWSKNLLGQSLSVSVDDASGS--SSSSCKVDLKPWLFWKKKGSKSFEVDGPKVDV 77 (274)
T ss_pred CCCCceEEEEEEEEe-cCCceEEEEEEeCCccCCeEEEEEeCcccc--ccccccccCccceeEecCCccccccCCceEEE
Confidence 578999999999999 788999999999999999999999997643 35599999999999999999999999999999
Q ss_pred EecCCccccCCCCCCCcceEEEEEECCEEEEEecCCchHHHHHhhccCCCCcceEEEEeeeeeccCCceeeeeeEEecCC
Q 021584 115 YWDLSNAQFDNGPEPSHEFYIIVVVDSVLSLFIGDMEDEQSVKRLKSGFPVAKFSLVSRCEQFSGRGALCSSKVQFCDAG 194 (310)
Q Consensus 115 ~WDls~Akf~~~PEP~sgfYVavv~d~EvvLlLGDl~~e~a~kk~~~~~~~~~~~LvsRrEhv~G~~~~~~Tka~F~e~G 194 (310)
|||||+|||+++|||++|||||||+|+||||+||||++| |+||++++|+..+++||||||||||+ +.|+|||||+|+|
T Consensus 78 ~WDLs~Akf~s~PEP~sgfYVavv~d~EvvLllGDl~~e-a~~rt~~~~~~~~~~LvsRrEhv~G~-~~~~Tka~F~e~G 155 (274)
T PF05910_consen 78 FWDLSSAKFGSGPEPVSGFYVAVVVDGEVVLLLGDLKKE-AYKRTKSRPSPSEAVLVSRREHVFGK-KVYSTKARFCEGG 155 (274)
T ss_pred EeCccccccCCCCCCCCccEEEEEECCEEEEEecCchhH-HHhhccCCCCccceeEEEEEEEEEEE-EEEeeEEEEcCCC
Confidence 999999999999999999999999999999999999875 79999999988899999999999999 9999999999999
Q ss_pred ceEEEEEEecCCCCCCCCCeeEEEEcCEEEEEEeeeeeeeccceeEEeCCeEEEEEEeeeecccc-cCCCccEEEEEEec
Q 021584 195 TAHDILIKCSGEEDGSRNPVLSVCIDNKKIFQVKRLRWNFRGNQTMFLDGLLVDMMWDVHDWFFK-EANTGFAVFMFRTR 273 (310)
Q Consensus 195 ~~HeI~Iec~~~~~g~~~p~l~V~VDgk~v~qVkrL~WkFRGNeti~vdg~~V~V~WDVHdWlF~-~~~~g~AVFmFr~~ 273 (310)
++|||+|||.++.+|++||+|||+||||+|||||||||||||||||+|||+|||||||||||||+ ++++|||||||||+
T Consensus 156 ~~HeI~Iec~~~~~g~~dp~l~V~VDgk~v~~VkrL~WkFRGNqti~vdg~~V~V~WDVHdWlF~~~~~~~~AVFmFr~~ 235 (274)
T PF05910_consen 156 KEHEISIECGGETGGPKDPELWVSVDGKKVVQVKRLRWKFRGNQTIFVDGLPVQVFWDVHDWLFNNGPGSGHAVFMFRPR 235 (274)
T ss_pred cEEEEEEEEeccCCCCCCceEEEEECCEEEEEEEEeeecccCceEEEECCeEEEEEEEhhhhhhccCCCCCceEEEEEec
Confidence 99999999966667889999999999999999999999999999999999999999999999996 35678999999999
Q ss_pred CCCccccchhhhccccC----CCCCCCCCeEEEEEEeeC
Q 021584 274 SGLDSRLWLEESNLKNN----GNELVDDQFSLIICACKS 308 (310)
Q Consensus 274 ~~~~s~~w~~~~~~~~~----~~~~~~~~FsL~l~A~K~ 308 (310)
+++|+++|++++..... +....+.|||||||||||
T Consensus 236 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~gFsLllyAwK~ 274 (274)
T PF05910_consen 236 SGLESRLWLEESSSSSSSRFSSSSSSGSGFSLLLYAWKN 274 (274)
T ss_pred CCccccccccccccccccccccccCCCCCEEEEEEEEcC
Confidence 99999999998765211 111234699999999997
No 2
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=90.33 E-value=2.9 Score=33.96 Aligned_cols=81 Identities=17% Similarity=0.272 Sum_probs=54.6
Q ss_pred CcceEEEEEECCEEEEEecCCchHHHHHhhccCCCCcceEEEEeeeeeccCCceeeeeeEEecCCceEEEEEEecCCCCC
Q 021584 130 SHEFYIIVVVDSVLSLFIGDMEDEQSVKRLKSGFPVAKFSLVSRCEQFSGRGALCSSKVQFCDAGTAHDILIKCSGEEDG 209 (310)
Q Consensus 130 ~sgfYVavv~d~EvvLlLGDl~~e~a~kk~~~~~~~~~~~LvsRrEhv~G~~~~~~Tka~F~e~G~~HeI~Iec~~~~~g 209 (310)
...|+.+-+.++.+.+.+.....+ ..+.+..+. ..|+.|.|.|+...
T Consensus 45 ~~~~~~l~l~~g~l~~~~~~g~~~----------------------------~~~~~~~~v-~dg~Wh~v~i~~~~---- 91 (151)
T cd00110 45 GGDFLALELEDGRLVLRYDLGSGS----------------------------LVLSSKTPL-NDGQWHSVSVERNG---- 91 (151)
T ss_pred CCCEEEEEEECCEEEEEEcCCccc----------------------------EEEEccCcc-CCCCEEEEEEEECC----
Confidence 566776667799998888775110 112222223 48899999999864
Q ss_pred CCCCeeEEEEcCEEEEEEeeeee--eeccceeEEeCCeE
Q 021584 210 SRNPVLSVCIDNKKIFQVKRLRW--NFRGNQTMFLDGLL 246 (310)
Q Consensus 210 ~~~p~l~V~VDgk~v~qVkrL~W--kFRGNeti~vdg~~ 246 (310)
..+.+.|||+.+++...-.. ....+..|+++|.|
T Consensus 92 ---~~~~l~VD~~~~~~~~~~~~~~~~~~~~~~~iGg~~ 127 (151)
T cd00110 92 ---RSVTLSVDGERVVESGSPGGSALLNLDGPLYLGGLP 127 (151)
T ss_pred ---CEEEEEECCccEEeeeCCCCceeecCCCCeEEcCCC
Confidence 35999999997766654443 36677778888765
No 3
>PF05910 DUF868: Plant protein of unknown function (DUF868); InterPro: IPR008586 This family consists of several hypothetical proteins from plants. The function of this family is unknown.
Probab=82.88 E-value=1.5 Score=42.49 Aligned_cols=36 Identities=28% Similarity=0.548 Sum_probs=30.8
Q ss_pred cceeeccCceeeEecCceeEEEecCCccccCCCCCC
Q 021584 94 HQLRDSKGSKTFHSCNSRVEVYWDLSNAQFDNGPEP 129 (310)
Q Consensus 94 w~fwkkkGsK~f~~~~~~V~v~WDls~Akf~~~PEP 129 (310)
.|=||=||+.++.+||-.|+|+||+..==|+++|-+
T Consensus 190 rL~WkFRGNqti~vdg~~V~V~WDVHdWlF~~~~~~ 225 (274)
T PF05910_consen 190 RLRWKFRGNQTIFVDGLPVQVFWDVHDWLFNNGPGS 225 (274)
T ss_pred EeeecccCceEEEECCeEEEEEEEhhhhhhccCCCC
Confidence 367999999999999999999999999888744433
No 4
>smart00282 LamG Laminin G domain.
Probab=66.63 E-value=59 Score=26.22 Aligned_cols=29 Identities=14% Similarity=0.335 Sum_probs=22.4
Q ss_pred cCCceEEEEEEecCCCCCCCCCeeEEEEcCEEEEEE
Q 021584 192 DAGTAHDILIKCSGEEDGSRNPVLSVCIDNKKIFQV 227 (310)
Q Consensus 192 e~G~~HeI~Iec~~~~~g~~~p~l~V~VDgk~v~qV 227 (310)
..|+.|.|.|+..+ ..+.+.|||+....+
T Consensus 60 ~dg~WH~v~i~~~~-------~~~~l~VD~~~~~~~ 88 (135)
T smart00282 60 NDGQWHRVAVERNG-------RRVTLSVDGENPVSG 88 (135)
T ss_pred CCCCEEEEEEEEeC-------CEEEEEECCCccccE
Confidence 57799999999864 248999999765543
No 5
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
Probab=61.87 E-value=18 Score=28.11 Aligned_cols=47 Identities=15% Similarity=0.347 Sum_probs=34.0
Q ss_pred cCCceEEEEEEecCCCCCCCCCeeEEEEcCEEEEEEeeeeee---eccceeEEeCCe
Q 021584 192 DAGTAHDILIKCSGEEDGSRNPVLSVCIDNKKIFQVKRLRWN---FRGNQTMFLDGL 245 (310)
Q Consensus 192 e~G~~HeI~Iec~~~~~g~~~p~l~V~VDgk~v~qVkrL~Wk---FRGNeti~vdg~ 245 (310)
..|+.|.|.|.... .++.+.||+....+....... +-....++++|.
T Consensus 52 ~dg~wh~v~i~~~~-------~~~~l~Vd~~~~~~~~~~~~~~~~~~~~~~l~iGg~ 101 (128)
T PF02210_consen 52 NDGQWHKVSISRDG-------NRVTLTVDGQSVSSESLPSSSSDSLDPDGSLYIGGL 101 (128)
T ss_dssp TSSSEEEEEEEEET-------TEEEEEETTSEEEEEESSSTTHHCBESEEEEEESST
T ss_pred cccceeEEEEEEee-------eeEEEEecCccceEEeccccceecccCCCCEEEecc
Confidence 57999999999864 359999999999998877664 223333555554
No 6
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=51.47 E-value=31 Score=36.23 Aligned_cols=54 Identities=24% Similarity=0.453 Sum_probs=39.1
Q ss_pred EeeeeeeeccceeEEeCCeEEEEEEeeeecccccCCCccEEEEEEecCCCccccchhhhcc
Q 021584 227 VKRLRWNFRGNQTMFLDGLLVDMMWDVHDWFFKEANTGFAVFMFRTRSGLDSRLWLEESNL 287 (310)
Q Consensus 227 VkrL~WkFRGNeti~vdg~~V~V~WDVHdWlF~~~~~g~AVFmFr~~~~~~s~~w~~~~~~ 287 (310)
|=+|+|+=+||..+--+-..+-|+||+| .+.-.-.|-|.-..++|- -|..++.+
T Consensus 279 I~slKWnk~G~yilS~~vD~ttilwd~~------~g~~~q~f~~~s~~~lDV-dW~~~~~F 332 (524)
T KOG0273|consen 279 IFSLKWNKKGTYILSGGVDGTTILWDAH------TGTVKQQFEFHSAPALDV-DWQSNDEF 332 (524)
T ss_pred eEEEEEcCCCCEEEeccCCccEEEEecc------CceEEEeeeeccCCccce-EEecCceE
Confidence 5579999999999886666778999998 233455666666665663 58777655
No 7
>PF06905 FAIM1: Fas apoptotic inhibitory molecule (FAIM1); InterPro: IPR010695 This family consists of several fas apoptotic inhibitory molecule (FAIM) proteins. FAIM expression is upregulated in B cells by anti-Ig treatment that induces Fas-resistance, and overexpression of FAIM diminishes sensitivity to Fas-mediated apoptosis of B and non-B cell lines. FAIM is highly evolutionarily conserved and is widely expressed in murine tissues, suggesting that FAIM plays an important role in cellular physiology [].; GO: 0043066 negative regulation of apoptosis; PDB: 3MX7_A 2KW1_A 2KD2_A.
Probab=49.45 E-value=72 Score=29.15 Aligned_cols=43 Identities=21% Similarity=0.454 Sum_probs=27.2
Q ss_pred CCceEEEEEEecCCCCCCCCCeeEEEEcCEEEEEEeeeeeeec--cceeEEeC
Q 021584 193 AGTAHDILIKCSGEEDGSRNPVLSVCIDNKKIFQVKRLRWNFR--GNQTMFLD 243 (310)
Q Consensus 193 ~G~~HeI~Iec~~~~~g~~~p~l~V~VDgk~v~qVkrL~WkFR--GNeti~vd 243 (310)
....|.|.+|=++ .-...-|+||||.+++ | .|.|+ |-++-.|+
T Consensus 14 ~d~~h~IefeHgt-----ttGkrvI~VDGkei~r-~--~wmfklvg~e~F~ig 58 (177)
T PF06905_consen 14 SDGVHKIEFEHGT-----TTGKRVIKVDGKEIVR-R--DWMFKLVGKETFTIG 58 (177)
T ss_dssp TTEEEEEEEEE-T-----TT--EEEEETTEEEEE-E-----S---EEEEEEET
T ss_pred CCCEEEEEEEeCC-----ccCeEEEEECCcEEEE-e--cceeeeCcccEEEEC
Confidence 6789999999543 2345899999998776 3 57776 66666666
No 8
>PF14099 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 3IKW_A 3INA_A 3IMN_A 3IN9_A 2ZZJ_A.
Probab=45.36 E-value=33 Score=30.56 Aligned_cols=36 Identities=22% Similarity=0.357 Sum_probs=26.8
Q ss_pred cCCceEEEEEEecCCCCCCCCCeeEEEEcCEEEEEEee
Q 021584 192 DAGTAHDILIKCSGEEDGSRNPVLSVCIDNKKIFQVKR 229 (310)
Q Consensus 192 e~G~~HeI~Iec~~~~~g~~~p~l~V~VDgk~v~qVkr 229 (310)
+.|+.|+|+|+..-.. ..+..+.|.+||+.|+..+.
T Consensus 150 ~~G~W~~~~i~~~~s~--~~~G~~~vw~nG~~v~~~~g 185 (224)
T PF14099_consen 150 ERGKWHDFVIHVKWSP--DSDGFLEVWLNGKLVVDYKG 185 (224)
T ss_dssp -TTSEEEEEEEEEE-C--CCTEEEEEEECCEECCEEEE
T ss_pred CCCcEEEEEEEEEECC--CCCEEEEEEECCEEEEEEeC
Confidence 5699999999986321 14678999999998887543
No 9
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=43.91 E-value=49 Score=28.04 Aligned_cols=34 Identities=15% Similarity=0.234 Sum_probs=27.4
Q ss_pred ecCCceEEEEEEecCCCCCCCCCeeEEEEcCEEEEEEeeee
Q 021584 191 CDAGTAHDILIKCSGEEDGSRNPVLSVCIDNKKIFQVKRLR 231 (310)
Q Consensus 191 ~e~G~~HeI~Iec~~~~~g~~~p~l~V~VDgk~v~qVkrL~ 231 (310)
.+.|+.|.|.|+|.+ +.+.|.|||+.|+......
T Consensus 124 ~~~~~W~~~~I~~~g-------~~i~v~vnG~~v~~~~d~~ 157 (185)
T PF06439_consen 124 IPPGEWNTVRIVVKG-------NRITVWVNGKPVADFTDPS 157 (185)
T ss_dssp --TTSEEEEEEEEET-------TEEEEEETTEEEEEEETTS
T ss_pred CCCCceEEEEEEEEC-------CEEEEEECCEEEEEEEcCC
Confidence 368899999999975 3599999999999987654
No 10
>COG0139 HisI Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism]
Probab=42.71 E-value=98 Score=26.54 Aligned_cols=62 Identities=21% Similarity=0.359 Sum_probs=38.1
Q ss_pred cceEEEEEECCEE--EEEecCCchHHHHHhhccCCCCcceEEEEeeee-eccCCceeeeeeEEecCC---ceEEEEEEec
Q 021584 131 HEFYIIVVVDSVL--SLFIGDMEDEQSVKRLKSGFPVAKFSLVSRCEQ-FSGRGALCSSKVQFCDAG---TAHDILIKCS 204 (310)
Q Consensus 131 sgfYVavv~d~Ev--vLlLGDl~~e~a~kk~~~~~~~~~~~LvsRrEh-v~G~~~~~~Tka~F~e~G---~~HeI~Iec~ 204 (310)
.|-+.|||-|.+- ||+||=|.+| |.+||-.. -.+...||.-+ +.=|| ...| +.+||.++|+
T Consensus 16 ~gLvpaIvQd~~t~eVLMlaymN~e-Al~kTleT---g~~~y~SRSR~~lW~KG---------etSG~~q~v~~i~~DCD 82 (111)
T COG0139 16 DGLVPAIVQDAETGEVLMLAYMNEE-ALAKTLET---GEAHYYSRSRQELWTKG---------ETSGHTQKVVEIRLDCD 82 (111)
T ss_pred CCeEEEEEEecCCCcEEEEEecCHH-HHHHHHhc---CeEEEEEcchhhheccc---------cccCceEEEEEEEcCCC
Confidence 7888899987654 7999999865 56654321 13555555432 22121 1222 5689999998
Q ss_pred C
Q 021584 205 G 205 (310)
Q Consensus 205 ~ 205 (310)
+
T Consensus 83 ~ 83 (111)
T COG0139 83 G 83 (111)
T ss_pred C
Confidence 5
No 11
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=34.01 E-value=1.2e+02 Score=23.74 Aligned_cols=16 Identities=25% Similarity=0.516 Sum_probs=11.9
Q ss_pred eeeEe-cCceeEEEecC
Q 021584 103 KTFHS-CNSRVEVYWDL 118 (310)
Q Consensus 103 K~f~~-~~~~V~v~WDl 118 (310)
.++.+ .|..+++.|||
T Consensus 49 ~~~~v~ag~~~~~~w~l 65 (89)
T PF05506_consen 49 WTYTVAAGQTVSLTWPL 65 (89)
T ss_pred EEEEECCCCEEEEEEee
Confidence 44455 37889999999
No 12
>PHA00514 dsDNA binding protein
Probab=33.46 E-value=81 Score=26.24 Aligned_cols=30 Identities=23% Similarity=0.419 Sum_probs=24.1
Q ss_pred EEEECCEE-------EEEecCCchHHHHHhhccCCCC
Q 021584 136 IVVVDSVL-------SLFIGDMEDEQSVKRLKSGFPV 165 (310)
Q Consensus 136 avv~d~Ev-------vLlLGDl~~e~a~kk~~~~~~~ 165 (310)
...+||++ .-|||++.-|.|.+++++++..
T Consensus 19 m~mvDGqv~~evl~~~Tl~GNLtiEqAQ~e~~k~~k~ 55 (98)
T PHA00514 19 MEMVDGQVQIEVLNEQTLLGNLTIEQAQKELSKQYKH 55 (98)
T ss_pred eEEecceEEEEEcCcceeecceeHHHHHHHHhhcccC
Confidence 46678888 4589999999999999887643
No 13
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=31.67 E-value=41 Score=35.09 Aligned_cols=46 Identities=22% Similarity=0.422 Sum_probs=31.2
Q ss_pred eEEEecCCc----cccCCCCCCC-------cceEEEEEECCEEEEEecCCchHHHHHh
Q 021584 112 VEVYWDLSN----AQFDNGPEPS-------HEFYIIVVVDSVLSLFIGDMEDEQSVKR 158 (310)
Q Consensus 112 V~v~WDls~----Akf~~~PEP~-------sgfYVavv~d~EvvLlLGDl~~e~a~kk 158 (310)
+-=+|||++ |||++-.-|+ .|||+|+-+|.-- ..|=||+|...+|+
T Consensus 370 ~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~-V~lwDLRKl~n~kt 426 (506)
T KOG0289|consen 370 VVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGS-VKLWDLRKLKNFKT 426 (506)
T ss_pred eEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCe-EEEEEehhhcccce
Confidence 444799985 8998554454 6999999996542 33458876555554
No 14
>PRK00051 hisI phosphoribosyl-AMP cyclohydrolase; Reviewed
Probab=30.04 E-value=1.9e+02 Score=25.24 Aligned_cols=62 Identities=18% Similarity=0.344 Sum_probs=38.5
Q ss_pred cceEEEEEEC--CEEEEEecCCchHHHHHhhccCCCCcceEEEEe-eeeeccCCceeeeeeEEecCC---ceEEEEEEec
Q 021584 131 HEFYIIVVVD--SVLSLFIGDMEDEQSVKRLKSGFPVAKFSLVSR-CEQFSGRGALCSSKVQFCDAG---TAHDILIKCS 204 (310)
Q Consensus 131 sgfYVavv~d--~EvvLlLGDl~~e~a~kk~~~~~~~~~~~LvsR-rEhv~G~~~~~~Tka~F~e~G---~~HeI~Iec~ 204 (310)
.|-.-|||-| ..-||+||=|.+| |.+++-.. -.+...|| |..+.-|| ...| +..+|.++|+
T Consensus 12 ~GLipaivqd~~tg~VLMlaymn~e-Al~~Tl~t---g~~~y~SRSR~~lW~KG---------etSG~~q~v~~i~~DCD 78 (125)
T PRK00051 12 DGLVPAIAQDAETGEVLMVAWMNEE-ALAKTLET---GRAHYWSRSRQKLWRKG---------ETSGHVQKVHEVRLDCD 78 (125)
T ss_pred CCcEEEEEEECCCCCEEEEEEcCHH-HHHHHHhc---CcEEEEeCccCcccCCC---------CCcCCeEEEEEEEecCC
Confidence 4777788877 5678999999875 56654321 23566666 33344332 1222 4568899998
Q ss_pred C
Q 021584 205 G 205 (310)
Q Consensus 205 ~ 205 (310)
+
T Consensus 79 ~ 79 (125)
T PRK00051 79 G 79 (125)
T ss_pred C
Confidence 5
No 15
>TIGR02148 Fibro_Slime fibro-slime domain. This model represents a conserved region of about 90 amino acids, shared in at least 4 distinct large putative proteins from the slime mold Dictyostelium discoideum and 10 proteins from the rumen bacterium Fibrobacter succinogenes, and in no other species so far. We propose here the name fibro-slime domain
Probab=29.30 E-value=51 Score=27.19 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=14.2
Q ss_pred CCeeEEEEcCEEEEEEe
Q 021584 212 NPVLSVCIDNKKIFQVK 228 (310)
Q Consensus 212 ~p~l~V~VDgk~v~qVk 228 (310)
|+.+||-||||.|+-+=
T Consensus 27 DDDvWVFIn~kLv~DlG 43 (90)
T TIGR02148 27 DDDVWVFINNKLVVDIG 43 (90)
T ss_pred CCeEEEEECCEEEEEcc
Confidence 56799999999988654
No 16
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=27.45 E-value=1.2e+02 Score=23.58 Aligned_cols=35 Identities=23% Similarity=0.432 Sum_probs=24.9
Q ss_pred EEEEeeeeeeeccceeEEeC-CeEEEEEEee---eeccc
Q 021584 224 IFQVKRLRWNFRGNQTMFLD-GLLVDMMWDV---HDWFF 258 (310)
Q Consensus 224 v~qVkrL~WkFRGNeti~vd-g~~V~V~WDV---HdWlF 258 (310)
.++|....=.-.+.+++.|. |..+++.|++ |+|+.
T Consensus 35 ~~~v~~~~y~~~~~~~~~v~ag~~~~~~w~l~~s~gwYD 73 (89)
T PF05506_consen 35 TFTVYDNAYGGGGPWTYTVAAGQTVSLTWPLAASGGWYD 73 (89)
T ss_pred EEEEEeCCcCCCCCEEEEECCCCEEEEEEeecCCCCcEE
Confidence 34444433333567888885 8999999999 89986
No 17
>PRK12322 NADH dehydrogenase subunit D; Provisional
Probab=26.73 E-value=40 Score=33.71 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=28.0
Q ss_pred eeEEEEcCEEEEEEe-eeeeeeccceeEEeCC
Q 021584 214 VLSVCIDNKKIFQVK-RLRWNFRGNQTMFLDG 244 (310)
Q Consensus 214 ~l~V~VDgk~v~qVk-rL~WkFRGNeti~vdg 244 (310)
++.+.+||++|+.+. ++-..+||=|++.-+.
T Consensus 23 r~~l~~~GE~I~~~e~~~Gy~HRG~Ek~~e~~ 54 (366)
T PRK12322 23 RLVLKIDGEIIVEATPVIGYLHRGTEKLAESL 54 (366)
T ss_pred EEEEEEcCCEEEEEEEecchhhhHHHHHhcCC
Confidence 677999999999999 9999999999988654
No 18
>smart00210 TSPN Thrombospondin N-terminal -like domains. Heparin-binding and cell adhesion domain of thrombospondin
Probab=20.51 E-value=1.4e+02 Score=26.29 Aligned_cols=36 Identities=19% Similarity=0.239 Sum_probs=26.4
Q ss_pred cCCceEEEEEEecCCCCCCCCCeeEEEEcCEEEEEEeeeeeeec
Q 021584 192 DAGTAHDILIKCSGEEDGSRNPVLSVCIDNKKIFQVKRLRWNFR 235 (310)
Q Consensus 192 e~G~~HeI~Iec~~~~~g~~~p~l~V~VDgk~v~qVkrL~WkFR 235 (310)
..|+.|-|.|...+. .+.+.||++.+-.+. |...+.
T Consensus 115 ~dg~WH~lal~V~~~-------~v~LyvDC~~~~~~~-l~~~~~ 150 (184)
T smart00210 115 ADGQWHKLALSVSGS-------SATLYVDCNEIDSRP-LDRPGQ 150 (184)
T ss_pred ccCCceEEEEEEeCC-------EEEEEECCcccccee-cCCccc
Confidence 488999999988642 488999999876553 655543
No 19
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=20.05 E-value=1.9e+02 Score=25.82 Aligned_cols=55 Identities=20% Similarity=0.219 Sum_probs=32.2
Q ss_pred ceeeeeeEEec-CCceEEEEEEecCCCCCCCCCeeEEEEcCEEEEEEeeeeeeeccc
Q 021584 182 ALCSSKVQFCD-AGTAHDILIKCSGEEDGSRNPVLSVCIDNKKIFQVKRLRWNFRGN 237 (310)
Q Consensus 182 ~~~~Tka~F~e-~G~~HeI~Iec~~~~~g~~~p~l~V~VDgk~v~qVkrL~WkFRGN 237 (310)
..|.+|.+|.+ ....|-|.|.-+|+..++ ---..+.|+-+..--=-||.|.+.+|
T Consensus 56 ~~~~g~~~~~~v~~~~~~~~i~g~G~~~~g-~~~~~~~v~l~~~g~gt~v~w~~~~~ 111 (146)
T COG3427 56 GTFSGRVRFVNVDEPPRSITINGSGGGAAG-FADGTVDVQLEPSGEGTRVNWFADAN 111 (146)
T ss_pred EEEEEEEEEccccCCCcEEEEEeecccccc-eeeeeeEEEEEEcCCCcEEEEEEEcc
Confidence 57899999998 889999999877622211 11122233222222224667776665
Done!