Query 021584
Match_columns 310
No_of_seqs 121 out of 149
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 06:16:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021584.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021584hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gne_A Val-1; alginate lyase, 85.8 0.86 3E-05 42.3 5.0 56 192-250 161-220 (252)
2 1d2s_A SHBG, sex hormone-bindi 65.3 8.1 0.00028 32.1 4.9 46 192-246 84-129 (170)
3 1pz7_A Agrin; structural prote 63.6 44 0.0015 28.1 9.4 49 192-247 107-157 (204)
4 1f5f_A SHBG, sex hormone-bindi 61.5 12 0.00042 31.8 5.5 49 192-247 96-148 (205)
5 2jd4_A Laminin subunit alpha-1 52.2 43 0.0015 30.7 7.8 29 192-227 101-129 (383)
6 3v64_A Low-density lipoprotein 49.5 91 0.0031 26.0 8.9 48 192-246 94-143 (191)
7 3bod_A Neurexin-1-alpha; neure 47.5 15 0.00053 30.5 3.7 49 192-247 89-140 (178)
8 3asi_A Neurexin-1-alpha; beta- 44.1 25 0.00085 32.8 5.0 50 192-247 85-134 (410)
9 3sh4_A LG3 peptide; actin disa 43.2 41 0.0014 28.3 5.8 48 192-246 93-142 (195)
10 1h30_A GAS6, growth-arrest-spe 38.1 80 0.0027 29.6 7.4 48 192-246 119-171 (422)
11 3zr5_A Galactocerebrosidase; h 38.0 89 0.003 32.2 8.3 34 192-232 596-629 (656)
12 4b1m_A Levanase; hydrolase, CB 37.4 40 0.0014 28.5 4.8 31 192-229 129-159 (185)
13 1dyk_A Laminin alpha 2 chain; 37.2 39 0.0013 31.3 5.1 49 192-247 293-343 (394)
14 3pve_A Agrin, AGRN protein; mR 36.3 32 0.0011 28.7 4.0 46 192-246 94-143 (189)
15 2h0b_A Neurexin-1-alpha; B-san 36.2 49 0.0017 27.2 5.1 48 192-246 87-136 (184)
16 2jd4_A Laminin subunit alpha-1 34.1 52 0.0018 30.1 5.4 49 192-247 281-331 (383)
17 2r1b_A Neurexin-1-beta, neurex 31.3 32 0.0011 29.8 3.2 28 192-226 95-122 (220)
18 1p9k_A ORF, hypothetical prote 30.9 19 0.00064 26.5 1.4 30 217-249 48-77 (79)
19 1dyk_A Laminin alpha 2 chain; 27.9 69 0.0023 29.6 5.1 29 192-227 115-143 (394)
20 2zzj_A Glucuronan lyase A; bet 27.5 86 0.0029 28.7 5.5 37 192-230 147-183 (238)
21 3asi_A Neurexin-1-alpha; beta- 25.7 45 0.0016 31.0 3.4 48 192-246 309-359 (410)
22 2cua_A Protein (CUA); CUA cent 24.3 1.7E+02 0.0057 23.7 6.3 45 215-259 38-86 (135)
23 2r1d_A Neurexin-1-beta, neurex 23.0 57 0.002 28.5 3.4 48 192-246 123-173 (226)
24 1a78_A Galectin-1; S-lectin, c 22.8 1.4E+02 0.0047 24.1 5.4 48 192-249 81-128 (134)
25 2k54_A Protein ATU0742; protei 21.5 2.3E+02 0.0078 20.9 6.2 12 246-257 108-119 (123)
26 3mx7_A FAS apoptotic inhibitor 20.6 3.1E+02 0.011 21.5 7.4 31 191-226 11-41 (90)
27 2r16_A Neurexin-1-alpha; beta- 20.2 87 0.003 25.9 3.8 29 192-227 85-113 (182)
28 4azz_A Levanase; hydrolase; 1. 24.9 23 0.00078 29.1 0.0 31 192-229 108-138 (172)
No 1
>3gne_A Val-1; alginate lyase, polysaccharide lyase family 14, chlorella VI lyase; HET: FLC; 1.20A {Chlorella virus} PDB: 3a0n_A* 3im0_A*
Probab=85.79 E-value=0.86 Score=42.27 Aligned_cols=56 Identities=14% Similarity=0.171 Sum_probs=44.3
Q ss_pred cCCceEEEEEEecCCCC----CCCCCeeEEEEcCEEEEEEeeeeeeeccceeEEeCCeEEEEE
Q 021584 192 DAGTAHDILIKCSGEED----GSRNPVLSVCIDNKKIFQVKRLRWNFRGNQTMFLDGLLVDMM 250 (310)
Q Consensus 192 e~G~~HeI~Iec~~~~~----g~~~p~l~V~VDgk~v~qVkrL~WkFRGNeti~vdg~~V~V~ 250 (310)
..|+.+.|.+....... |..|.++.|.|||+.|+ ...|+|. .+..+.|+|+..+.|
T Consensus 161 ~~G~W~~V~q~VkLNT~~~G~g~aDG~v~v~VNG~~v~-~~~i~~r--~~~~~~I~gi~fsTF 220 (252)
T 3gne_A 161 KYDVWNRIEIGTKMNTFKNGIPQLDGESYVIVNGKKEV-LKRINWS--RSPDLLISRFDWNTF 220 (252)
T ss_dssp CBTSCEEEEEEEECCCEETTEECSCEEEEEEETTEEEE-EEEECCC--SSTTCCEEEEEEEEE
T ss_pred cCCceEEEEEEEEcCCCCCCCccCCceEEEEECCEEEE-ECCEEEE--ecCCccEeEEEEEEE
Confidence 68999999998875433 45688999999999997 7888775 667677888877765
No 2
>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin G-like domain, jellyroll, androgen binding protein (ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4 PDB: 1kdk_A* 1kdm_A*
Probab=65.27 E-value=8.1 Score=32.12 Aligned_cols=46 Identities=22% Similarity=0.422 Sum_probs=33.1
Q ss_pred cCCceEEEEEEecCCCCCCCCCeeEEEEcCEEEEEEeeeeeeeccceeEEeCCeE
Q 021584 192 DAGTAHDILIKCSGEEDGSRNPVLSVCIDNKKIFQVKRLRWNFRGNQTMFLDGLL 246 (310)
Q Consensus 192 e~G~~HeI~Iec~~~~~g~~~p~l~V~VDgk~v~qVkrL~WkFRGNeti~vdg~~ 246 (310)
..|+.|.|.|+-.+ ..+.+.|||+.+..+..+.- .- ...++|+|.|
T Consensus 84 nDG~WH~V~v~~~~-------~~~~L~VD~~~~~~~~~~~~-l~-~~~lylGG~p 129 (170)
T 1d2s_A 84 DDGRWHQVEVKMEG-------DSVLLEVDGEEVLRLRQVSG-HP-IMRIALGGLL 129 (170)
T ss_dssp CSSSCEEEEEEEET-------TEEEEEETTEEEEEETTCCC-CC-EEEEEESSCS
T ss_pred CCCCCEEEEEEEeC-------CEEEEEECCeeeeeeccCCC-cc-cccEEEECcc
Confidence 58899999998763 35999999999887665421 00 2457778776
No 3
>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4 PDB: 1pz8_A 1pz9_A 1q56_A
Probab=63.63 E-value=44 Score=28.13 Aligned_cols=49 Identities=10% Similarity=0.024 Sum_probs=30.9
Q ss_pred cCCceEEEEEEecCCCCCCCCCeeEEEEcCEEEEEEeee--eeeeccceeEEeCCeEE
Q 021584 192 DAGTAHDILIKCSGEEDGSRNPVLSVCIDNKKIFQVKRL--RWNFRGNQTMFLDGLLV 247 (310)
Q Consensus 192 e~G~~HeI~Iec~~~~~g~~~p~l~V~VDgk~v~qVkrL--~WkFRGNeti~vdg~~V 247 (310)
..|+.|.|.|+-.+ ..+.+.||+.......-. .-.+--+..++|+|.|.
T Consensus 107 nDg~WH~V~v~r~~-------~~~~L~VD~~~~~~~~~~~~~~~l~~~~~lylGG~p~ 157 (204)
T 1pz7_A 107 NTNHWTHIKAYRVQ-------REGSLQVGNEAPITGSSPLGATQLDTDGALWLGGMER 157 (204)
T ss_dssp CSSSCEEEEEEEET-------TEEEEEETTSCCEEEECCSSCCCEEECCEEEESSCSC
T ss_pred CCCCeEEEEEEEeC-------CEEEEEECCcceEEEECCCCCceEcCCCCEEEecCCC
Confidence 57899999998764 248899999875543311 01112245677777653
No 4
>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein; HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB: 1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A*
Probab=61.54 E-value=12 Score=31.79 Aligned_cols=49 Identities=22% Similarity=0.402 Sum_probs=34.2
Q ss_pred cCCceEEEEEEecCCCCCCCCCeeEEEEcCEEEEEEeeee-e--eec-cceeEEeCCeEE
Q 021584 192 DAGTAHDILIKCSGEEDGSRNPVLSVCIDNKKIFQVKRLR-W--NFR-GNQTMFLDGLLV 247 (310)
Q Consensus 192 e~G~~HeI~Iec~~~~~g~~~p~l~V~VDgk~v~qVkrL~-W--kFR-GNeti~vdg~~V 247 (310)
..|+.|.|.|+-.+ ..+.+.|||..+..+.++. - +.- -+..++|+|+|.
T Consensus 96 nDG~WH~V~v~r~~-------~~~~L~VD~~~~~~~~~~~~~~~~~~~~~~~lyiGG~p~ 148 (205)
T 1f5f_A 96 DDGRWHQVEVKMEG-------DSVLLEVDGEEVLRLRQVSGPLTSKRHPIMRIALGGLLF 148 (205)
T ss_dssp CSSSCEEEEEEEET-------TEEEEEETTEEEEEECSCCCCC----CCEEEEEESSCSS
T ss_pred CCCCCEEEEEEEeC-------CEEEEEECCeeeeeeeccCCCcccccCCCceEEEeCccC
Confidence 58899999998763 3599999999988775431 1 111 235688999873
No 5
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus}
Probab=52.21 E-value=43 Score=30.73 Aligned_cols=29 Identities=14% Similarity=0.142 Sum_probs=21.0
Q ss_pred cCCceEEEEEEecCCCCCCCCCeeEEEEcCEEEEEE
Q 021584 192 DAGTAHDILIKCSGEEDGSRNPVLSVCIDNKKIFQV 227 (310)
Q Consensus 192 e~G~~HeI~Iec~~~~~g~~~p~l~V~VDgk~v~qV 227 (310)
..|+.|.|.|+-.+. .+.+.|||+.....
T Consensus 101 ~Dg~WH~V~v~r~~~-------~~~L~VD~~~~~~~ 129 (383)
T 2jd4_A 101 SDGKWHTVKTEYIKR-------KAFMTVDGQESPSV 129 (383)
T ss_dssp TTSSCEEEEEEEETT-------EEEEEETTEECCCE
T ss_pred cCCCcEEEEEEEeCC-------EEEEEEcCccccce
Confidence 588899999987542 47888888766543
No 6
>3v64_A Low-density lipoprotein receptor-related protein; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} PDB: 3v65_A
Probab=49.52 E-value=91 Score=25.99 Aligned_cols=48 Identities=13% Similarity=0.057 Sum_probs=30.2
Q ss_pred cCCceEEEEEEecCCCCCCCCCeeEEEEcCEEEEEEeee--eeeeccceeEEeCCeE
Q 021584 192 DAGTAHDILIKCSGEEDGSRNPVLSVCIDNKKIFQVKRL--RWNFRGNQTMFLDGLL 246 (310)
Q Consensus 192 e~G~~HeI~Iec~~~~~g~~~p~l~V~VDgk~v~qVkrL--~WkFRGNeti~vdg~~ 246 (310)
..|+.|.|.|+-.+ ..+.+.|||.......-- .-.+.-+..|+|+|.|
T Consensus 94 ~Dg~WH~V~v~r~~-------~~~~L~VD~~~~~~~~~~~~~~~l~~~~~lylGG~p 143 (191)
T 3v64_A 94 NTNRWLRIRAHREH-------REGSLQVGNEAPVTGSSPLGATQLDTDGALWLGGLQ 143 (191)
T ss_dssp TTSSCEEEEEEEET-------TEEEEEETTSCCEEEECCTTCCCEEECSEEEESCCS
T ss_pred cCCCCEEEEEEEeC-------CEEEEEECCeeeEeEECCCCcceeccCCceEEcccC
Confidence 57899999998753 358999999865443210 1112223457777765
No 7
>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium, cell adhesion, EGF-like domain, glycoprotein, membrane, metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C* 2wqz_C* 1c4r_A 3bop_A 3mw4_A*
Probab=47.48 E-value=15 Score=30.48 Aligned_cols=49 Identities=16% Similarity=0.230 Sum_probs=33.0
Q ss_pred cCCceEEEEEEecCCCCCCCCCeeEEEEcCEEEEEEeeeeee---eccceeEEeCCeEE
Q 021584 192 DAGTAHDILIKCSGEEDGSRNPVLSVCIDNKKIFQVKRLRWN---FRGNQTMFLDGLLV 247 (310)
Q Consensus 192 e~G~~HeI~Iec~~~~~g~~~p~l~V~VDgk~v~qVkrL~Wk---FRGNeti~vdg~~V 247 (310)
..|+.|.|.|+-.+ ..+.+.||+..........=. +--+..|+|+|.|.
T Consensus 89 nDg~WH~V~v~r~~-------~~~~L~VD~~~~~~~~~~~~~~~~l~~~~~lylGG~p~ 140 (178)
T 3bod_A 89 NDGKYHVVRFTRSG-------GNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQ 140 (178)
T ss_dssp CSSSCEEEEEEEET-------TEEEEEETTSCCEEECCCSCCCCCBCCEEEEEESCCTT
T ss_pred cCCCeEEEEEEEeC-------CEEEEEEeCCceeeeecCCCcceEEeCCCcEEEecccC
Confidence 58899999998764 358999999876554322111 22344688888774
No 8
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}
Probab=44.10 E-value=25 Score=32.84 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=31.0
Q ss_pred cCCceEEEEEEecCCCCCCCCCeeEEEEcCEEEEEEeeeeeeeccceeEEeCCeEE
Q 021584 192 DAGTAHDILIKCSGEEDGSRNPVLSVCIDNKKIFQVKRLRWNFRGNQTMFLDGLLV 247 (310)
Q Consensus 192 e~G~~HeI~Iec~~~~~g~~~p~l~V~VDgk~v~qVkrL~WkFRGNeti~vdg~~V 247 (310)
..|+.|.|.|+-.+. -.+.+.||++.+.++-.-.-.+.-+..++|+|.|-
T Consensus 85 nDg~WH~V~v~r~~~------~~~~l~VD~~~~~~~~~~~~~l~~~~~lyvGG~p~ 134 (410)
T 3asi_A 85 NDNQWHNVMISRDTS------NLHTVKIDTKITTQITAGARNLDLKSDLYIGGVAK 134 (410)
T ss_dssp CSSSCEEEEEEECTT------CEEEEEETTEEEEEECTTCCCCCBCSCEEESCCCG
T ss_pred CCCCeEEEEEEEcCC------ceEEEEECCEeceeccCCccceecCCceEECcccc
Confidence 478999999987532 13789999998777521111122234566666653
No 9
>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A
Probab=43.20 E-value=41 Score=28.26 Aligned_cols=48 Identities=13% Similarity=0.219 Sum_probs=31.6
Q ss_pred cCCceEEEEEEecCCCCCCCCCeeEEEEcCEEEEEEeeee--eeeccceeEEeCCeE
Q 021584 192 DAGTAHDILIKCSGEEDGSRNPVLSVCIDNKKIFQVKRLR--WNFRGNQTMFLDGLL 246 (310)
Q Consensus 192 e~G~~HeI~Iec~~~~~g~~~p~l~V~VDgk~v~qVkrL~--WkFRGNeti~vdg~~ 246 (310)
..|+.|.|.|+-.+ ..+.+.|||.......--. -.+.=+..|+|.|.|
T Consensus 93 ~Dg~WH~V~v~r~~-------~~~~L~VD~~~~~~~~~~~~~~~l~~~~~lyvGG~p 142 (195)
T 3sh4_A 93 NDGEWHRVTALREG-------RRGSIQVDGEELVSGRSPGPNVAVNAKGSVYIGGAP 142 (195)
T ss_dssp CSSSCEEEEEEEET-------TEEEEEETTCCCEEEECCSSCCCCCCCSCEEESCCT
T ss_pred CCCCeEEEEEEEeC-------CEEEEEECCeeeeeeeCCCCcccccCCCCEEECCCC
Confidence 57899999998764 2589999998765433110 111223468888876
No 10
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A*
Probab=38.09 E-value=80 Score=29.61 Aligned_cols=48 Identities=13% Similarity=0.262 Sum_probs=31.2
Q ss_pred cCCceEEEEEEecCCCCCCCCCeeEEEEcCEEEEEEeee--eeee-cc--ceeEEeCCeE
Q 021584 192 DAGTAHDILIKCSGEEDGSRNPVLSVCIDNKKIFQVKRL--RWNF-RG--NQTMFLDGLL 246 (310)
Q Consensus 192 e~G~~HeI~Iec~~~~~g~~~p~l~V~VDgk~v~qVkrL--~WkF-RG--Neti~vdg~~ 246 (310)
..|+.|.|.|+-.+ -.+.++||+..+....-- .... +| +..++|+|.|
T Consensus 119 nDg~WH~V~v~r~~-------~~~~L~VD~~~~~~~~~~g~~~~l~~~~~~~~lyvGG~p 171 (422)
T 1h30_A 119 NHGMWQTISVEELA-------RNLVIKVNRDAVMKIAVAGDLFQPERGLYHLNLTVGGIP 171 (422)
T ss_dssp CSSCCEEEEEEECS-------SEEEEEETTEEEEEEECCSCSSEEETTEEECEEEESSCS
T ss_pred cCCCCEEEEEEEcC-------CEEEEEECCeeeEEeecCCcccccccccccceEEEecCc
Confidence 57899999998753 258999999987765211 0111 22 3566677754
No 11
>3zr5_A Galactocerebrosidase; hydrolase, GALC, glycosyl hydrolase, krabbe disease, TIM BAR lectin domain; HET: NAG; 2.10A {Mus musculus} PDB: 3zr6_A*
Probab=37.99 E-value=89 Score=32.18 Aligned_cols=34 Identities=9% Similarity=0.135 Sum_probs=28.4
Q ss_pred cCCceEEEEEEecCCCCCCCCCeeEEEEcCEEEEEEeeeee
Q 021584 192 DAGTAHDILIKCSGEEDGSRNPVLSVCIDNKKIFQVKRLRW 232 (310)
Q Consensus 192 e~G~~HeI~Iec~~~~~g~~~p~l~V~VDgk~v~qVkrL~W 232 (310)
+.++.|.+.|++.+ ..+.+.+||+.++.+.--..
T Consensus 596 ~~~~w~~L~l~~~G-------~~i~~~ldG~~v~~~~D~~~ 629 (656)
T 3zr5_A 596 TAKRWYTLTLGIKG-------YFAFGMLNGTILWKNVRVKY 629 (656)
T ss_dssp CTTCEEEEEEEEET-------TEEEEEETTEEEEEEEECCS
T ss_pred CCCceEEEEEEEEC-------CEEEEEECCEEEEEEecCCC
Confidence 68899999999985 34999999999988766554
No 12
>4b1m_A Levanase; hydrolase, CBM66; HET: FRU; 1.10A {Bacillus subtilis} PDB: 4b1l_A* 4azz_A
Probab=37.36 E-value=40 Score=28.45 Aligned_cols=31 Identities=10% Similarity=0.318 Sum_probs=26.0
Q ss_pred cCCceEEEEEEecCCCCCCCCCeeEEEEcCEEEEEEee
Q 021584 192 DAGTAHDILIKCSGEEDGSRNPVLSVCIDNKKIFQVKR 229 (310)
Q Consensus 192 e~G~~HeI~Iec~~~~~g~~~p~l~V~VDgk~v~qVkr 229 (310)
+.|+.|.|.|++.+ ..+.+.|||+.++.+.-
T Consensus 129 ~~g~w~~l~I~~~G-------~~i~~~vnG~~v~~~~D 159 (185)
T 4b1m_A 129 DVNKKYHLKTEAEG-------DRFKIYLDDRLVIDAHD 159 (185)
T ss_dssp CSSCCEEEEEEEET-------TEEEEEETTEEEEEEEC
T ss_pred CCCCeEEEEEEEEC-------CEEEEEECCEEEEEEEC
Confidence 46899999999975 35999999999988764
No 13
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A
Probab=37.15 E-value=39 Score=31.29 Aligned_cols=49 Identities=16% Similarity=0.159 Sum_probs=32.5
Q ss_pred cCCceEEEEEEecCCCCCCCCCeeEEEEcCEEEEEEeee--eeeeccceeEEeCCeEE
Q 021584 192 DAGTAHDILIKCSGEEDGSRNPVLSVCIDNKKIFQVKRL--RWNFRGNQTMFLDGLLV 247 (310)
Q Consensus 192 e~G~~HeI~Iec~~~~~g~~~p~l~V~VDgk~v~qVkrL--~WkFRGNeti~vdg~~V 247 (310)
..|+.|.|.|.-.+ ..+.+.|||..+...... ...+.-+..++|+|.|-
T Consensus 293 ~DG~WH~V~v~~~~-------~~~~L~VD~~~~~~~~~~~~~~~l~~~~~lylGG~p~ 343 (394)
T 1dyk_A 293 CNGQWHKVTAKKIK-------NRLELVVDGNQVDAQSPNSASTSADTNDPVFVGGFPG 343 (394)
T ss_dssp TSSSCEEEEEEEET-------TEEEEEETTEEEEEECCCTTCCCBCCCBCCEESCCCT
T ss_pred cCCceEEEEEEEeC-------CEEEEEECCcccccccCCCcceecccCCCEEEcCCCc
Confidence 56899999998653 248999999876543211 22344455688888764
No 14
>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2, protein structure initiative; 1.40A {Mus musculus}
Probab=36.34 E-value=32 Score=28.72 Aligned_cols=46 Identities=11% Similarity=0.174 Sum_probs=30.3
Q ss_pred cCCceEEEEEEecCCCCCCCCCeeEEEEcCEEEEEEeee----eeeeccceeEEeCCeE
Q 021584 192 DAGTAHDILIKCSGEEDGSRNPVLSVCIDNKKIFQVKRL----RWNFRGNQTMFLDGLL 246 (310)
Q Consensus 192 e~G~~HeI~Iec~~~~~g~~~p~l~V~VDgk~v~qVkrL----~WkFRGNeti~vdg~~ 246 (310)
..|+.|.|.|+-.+ ..+.+.|||....+..-. ..+. +..++|.|.|
T Consensus 94 ~Dg~WH~V~v~r~~-------~~~~L~VD~~~~~~~~~~~~~~~l~~--~~~lyvGG~p 143 (189)
T 3pve_A 94 ALGTWVRVFLERNG-------RKGALQVGDGPRVLGESPVPHTMLNL--KEPLYVGGAP 143 (189)
T ss_dssp CTTSEEEEEEEEET-------TEEEEEETTSCCEEEECCSSCCCCCC--CSCEEESCCS
T ss_pred CCCCEEEEEEEEeC-------CEEEEEECCceeEeEEcCCCcceecC--CCCEEECCcC
Confidence 47899999998753 358999999865443211 1122 3457888876
No 15
>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus}
Probab=36.15 E-value=49 Score=27.17 Aligned_cols=48 Identities=8% Similarity=0.169 Sum_probs=29.6
Q ss_pred cCCceEEEEEEecCCCCCCCCCeeEEEEcCEEEEEEeee-eee-eccceeEEeCCeE
Q 021584 192 DAGTAHDILIKCSGEEDGSRNPVLSVCIDNKKIFQVKRL-RWN-FRGNQTMFLDGLL 246 (310)
Q Consensus 192 e~G~~HeI~Iec~~~~~g~~~p~l~V~VDgk~v~qVkrL-~Wk-FRGNeti~vdg~~ 246 (310)
..|+.|.|.|+-.+ ..+.+.|||.......-- ... .--+..++|+|.|
T Consensus 87 ~Dg~WH~V~v~r~~-------~~~~L~VD~~~~~~~~~~~~~~~l~~~~~l~lGG~p 136 (184)
T 2h0b_A 87 NDNAWHDVKVTRNL-------RQVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSP 136 (184)
T ss_dssp SSSSCEEEEEEEET-------TEEEEEETTTEEEEEECSTTCCCEEECSEEEESCCT
T ss_pred CCCCeEEEEEEEeC-------CEEEEEEcCceeeeeECCCCceeccCCCCEEECCCC
Confidence 47899999998653 248999999876543200 010 0113356777765
No 16
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus}
Probab=34.11 E-value=52 Score=30.12 Aligned_cols=49 Identities=12% Similarity=0.158 Sum_probs=31.0
Q ss_pred cCCceEEEEEEecCCCCCCCCCeeEEEEcCEEEEEEee-eee-eeccceeEEeCCeEE
Q 021584 192 DAGTAHDILIKCSGEEDGSRNPVLSVCIDNKKIFQVKR-LRW-NFRGNQTMFLDGLLV 247 (310)
Q Consensus 192 e~G~~HeI~Iec~~~~~g~~~p~l~V~VDgk~v~qVkr-L~W-kFRGNeti~vdg~~V 247 (310)
..|+.|.|.|+-.+ ..+.+.|||..+..... ... .+.-+..++|+|.|.
T Consensus 281 ~DG~WH~V~l~~~~-------~~~~L~VD~~~~~~~~~~~~~~~l~~~~~lylGG~p~ 331 (383)
T 2jd4_A 281 CDGKWHTLQAHKSK-------HRIVLTVDGNSVRAESPHTHSTSADTNDPIYVGGYPA 331 (383)
T ss_dssp GSSSCEEEEEEEET-------TEEEEEETTEEEEEC----CCCCBCCCEEEEESCCCT
T ss_pred cCCCcEEEEEEEcC-------CEEEEEECCeecccccCCCCcccccCCCCEEEecccc
Confidence 57899999998753 24889999987654221 111 233345678888753
No 17
>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E* 3mw3_A*
Probab=31.26 E-value=32 Score=29.81 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=22.6
Q ss_pred cCCceEEEEEEecCCCCCCCCCeeEEEEcCEEEEE
Q 021584 192 DAGTAHDILIKCSGEEDGSRNPVLSVCIDNKKIFQ 226 (310)
Q Consensus 192 e~G~~HeI~Iec~~~~~g~~~p~l~V~VDgk~v~q 226 (310)
..|+.|.|.|+-.+ ..+.+.||+..+.+
T Consensus 95 nDG~WH~V~v~r~~-------~~~~L~VD~~~~~~ 122 (220)
T 2r1b_A 95 NDGKYHVVRFTRSG-------GNATLQVDSWPVIE 122 (220)
T ss_dssp CSSSCEEEEEEEET-------TEEEEEETTSCCEE
T ss_pred cCCceEEEEEEEeC-------CEEEEEECCcceee
Confidence 58999999998764 35899999997654
No 18
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=30.89 E-value=19 Score=26.53 Aligned_cols=30 Identities=27% Similarity=0.283 Sum_probs=15.0
Q ss_pred EEEcCEEEEEEeeeeeeeccceeEEeCCeEEEE
Q 021584 217 VCIDNKKIFQVKRLRWNFRGNQTMFLDGLLVDM 249 (310)
Q Consensus 217 V~VDgk~v~qVkrL~WkFRGNeti~vdg~~V~V 249 (310)
|+|||+.+ +...-+...++.|.|+|.++++
T Consensus 48 V~VNG~~v---~~~~~~v~~gd~I~v~~~~~~~ 77 (79)
T 1p9k_A 48 VKVDGAVE---TRKRCKIVAGQTVSFAGHSVQV 77 (79)
T ss_dssp HEETTBCC---CCSSCCCCSSEEEEETTEEEEE
T ss_pred EEECCEEe---cCCCCCCCCCCEEEECCEEEEE
Confidence 45555542 2233344445566666666554
No 19
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A
Probab=27.87 E-value=69 Score=29.64 Aligned_cols=29 Identities=17% Similarity=0.148 Sum_probs=22.7
Q ss_pred cCCceEEEEEEecCCCCCCCCCeeEEEEcCEEEEEE
Q 021584 192 DAGTAHDILIKCSGEEDGSRNPVLSVCIDNKKIFQV 227 (310)
Q Consensus 192 e~G~~HeI~Iec~~~~~g~~~p~l~V~VDgk~v~qV 227 (310)
..|+.|.|.|+-.+ ..+.+.|||+.+...
T Consensus 115 ~Dg~WH~V~v~r~~-------~~~~L~VD~~~~~~~ 143 (394)
T 1dyk_A 115 NDGQWHKIKIVRVK-------QEGILYVDDASSQTI 143 (394)
T ss_dssp CSSSCEEEEEEEET-------TEEEEEETTEEEEEE
T ss_pred CCCCEEEEEEEEeC-------CEEEEEEcCccccee
Confidence 58999999998764 248899999887654
No 20
>2zzj_A Glucuronan lyase A; beta-jelly roll; HET: CIT; 1.80A {Trichoderma reesei}
Probab=27.48 E-value=86 Score=28.68 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=28.6
Q ss_pred cCCceEEEEEEecCCCCCCCCCeeEEEEcCEEEEEEeee
Q 021584 192 DAGTAHDILIKCSGEEDGSRNPVLSVCIDNKKIFQVKRL 230 (310)
Q Consensus 192 e~G~~HeI~Iec~~~~~g~~~p~l~V~VDgk~v~qVkrL 230 (310)
..|+.|+|+|...=... .+.-+.|-+||++|+.-+..
T Consensus 147 ~~G~Wh~iVihvkWs~d--~~Gf~~vW~dG~~v~~~~g~ 183 (238)
T 2zzj_A 147 SAGAWHRVVLQIKWASD--NTGYFKIWFDGAKVHEEYNV 183 (238)
T ss_dssp CTTSCEEEEEEEEECSS--TTEEEEEEETTEEEEEEEEE
T ss_pred cCCceEEEEEEEEEeCC--CCcEEEEEECCEEEEeecCc
Confidence 69999999998752111 25679999999999987654
No 21
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}
Probab=25.73 E-value=45 Score=31.04 Aligned_cols=48 Identities=17% Similarity=0.268 Sum_probs=32.7
Q ss_pred cCCceEEEEEEecCCCCCCCCCeeEEEEcCEEEEEEeee--eee-eccceeEEeCCeE
Q 021584 192 DAGTAHDILIKCSGEEDGSRNPVLSVCIDNKKIFQVKRL--RWN-FRGNQTMFLDGLL 246 (310)
Q Consensus 192 e~G~~HeI~Iec~~~~~g~~~p~l~V~VDgk~v~qVkrL--~Wk-FRGNeti~vdg~~ 246 (310)
..|+.|.|.|+-.+ ..+.+.||+..+....-- +.+ |..+..|+|+|.|
T Consensus 309 ~DG~wH~V~v~r~~-------~~~~L~VD~~~~~~~~~~g~~~~~~~~~~~lylGG~p 359 (410)
T 3asi_A 309 NDGKYHVVRFTRSG-------GNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKE 359 (410)
T ss_dssp CSSSCEEEEEEEET-------TEEEEEETTSCCEEECCSSCCCCCBCCEEEEEESSTT
T ss_pred CCCCeEEEEEEEEC-------CEEEEEECCcceecccCCCccceeeeccceEEECCcc
Confidence 56899999998653 258999999876554211 122 4556778888865
No 22
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*
Probab=24.32 E-value=1.7e+02 Score=23.72 Aligned_cols=45 Identities=16% Similarity=0.192 Sum_probs=32.8
Q ss_pred eEEEEcCEEEEEEeeeeeeeccceeEEeCCeEEEEEE---ee-eecccc
Q 021584 215 LSVCIDNKKIFQVKRLRWNFRGNQTMFLDGLLVDMMW---DV-HDWFFK 259 (310)
Q Consensus 215 l~V~VDgk~v~qVkrL~WkFRGNeti~vdg~~V~V~W---DV-HdWlF~ 259 (310)
+.-..++...++|.--+|+|.=|+.+.=-|.+|.+.. || |+|...
T Consensus 38 ~~~~~~~~~~V~v~~~~~~f~P~~l~Vp~G~~V~~~vts~DV~Hsf~ip 86 (135)
T 2cua_A 38 VVQTGPNQYTVYVLAFAFGYQPNPIEVPQGAEIVFKITSPDVIHGFHVE 86 (135)
T ss_dssp EEEEETTEEEEEEEEETTEEESSSEEEETTSEEEEEEEBSSSCEEEEET
T ss_pred cccCCCCCEEEEEEEEeCEEECCEEEEcCCCEEEEEEEeCCccceEEec
Confidence 4445556666777767899988765555699999988 54 999874
No 23
>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB: 3biw_E*
Probab=23.04 E-value=57 Score=28.47 Aligned_cols=48 Identities=17% Similarity=0.200 Sum_probs=31.5
Q ss_pred cCCceEEEEEEecCCCCCCCCCeeEEEEcCEEEEEEeee---eeeeccceeEEeCCeE
Q 021584 192 DAGTAHDILIKCSGEEDGSRNPVLSVCIDNKKIFQVKRL---RWNFRGNQTMFLDGLL 246 (310)
Q Consensus 192 e~G~~HeI~Iec~~~~~g~~~p~l~V~VDgk~v~qVkrL---~WkFRGNeti~vdg~~ 246 (310)
..|+.|.|.|+-.+ ..+.++||+..+..-... .-.+.-+..|+|+|+|
T Consensus 123 nDG~WH~V~v~r~~-------~~~~L~VD~~~~~~~~~~~~~~~~l~~~~~lylGG~p 173 (226)
T 2r1d_A 123 NDGKYHVVRFTRSG-------GNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKE 173 (226)
T ss_dssp CSSSCEEEEEEEET-------TEEEEEETTSCCEEECCSSCCCCCBCSEEEEEESSTT
T ss_pred cCCCCEEEEEEEeC-------CEEEEEEcCccceEEecCCCcceeccCCCeEEEcccc
Confidence 58899999998764 358999999864432111 1112234568888877
No 24
>1a78_A Galectin-1; S-lectin, carbohydrate binding, complex (lectin/saccharide); HET: TDG; 2.00A {Bufo arenarum} SCOP: b.29.1.3 PDB: 1gan_A*
Probab=22.80 E-value=1.4e+02 Score=24.06 Aligned_cols=48 Identities=8% Similarity=0.143 Sum_probs=34.0
Q ss_pred cCCceEEEEEEecCCCCCCCCCeeEEEEcCEEEEEEeeeeeeeccceeEEeCCeEEEE
Q 021584 192 DAGTAHDILIKCSGEEDGSRNPVLSVCIDNKKIFQVKRLRWNFRGNQTMFLDGLLVDM 249 (310)
Q Consensus 192 e~G~~HeI~Iec~~~~~g~~~p~l~V~VDgk~v~qVkrL~WkFRGNeti~vdg~~V~V 249 (310)
..|+.-+|.|.|.. .+..|.|||+...+-++-. ....=.+|.|+| |++
T Consensus 81 ~~G~~F~l~i~~~~-------~~f~V~Vng~~~~~F~hR~-~~~~i~~l~I~G--v~l 128 (134)
T 1a78_A 81 QQGAEVMVCFEYQT-------QKIIIKFSSGDQFSFPVRK-VLPSIPFLSLEG--LAF 128 (134)
T ss_dssp CTTSEEEEEEEECS-------SEEEEEETTSCEEEEECSS-CCSSEEEEEEES--SEE
T ss_pred cCCCcEEEEEEEcC-------CEEEEEECCEEEEEecCCC-CHhhCCEEEEEe--EEE
Confidence 47888899999963 4599999999887765322 334445666788 554
No 25
>2k54_A Protein ATU0742; protein of unknown function, structural genomics, PSI-2, Pro structure initiative; NMR {Agrobacterium tumefaciens str} SCOP: d.17.4.29
Probab=21.50 E-value=2.3e+02 Score=20.93 Aligned_cols=12 Identities=0% Similarity=-0.376 Sum_probs=8.0
Q ss_pred EEEEEEeeeecc
Q 021584 246 LVDMMWDVHDWF 257 (310)
Q Consensus 246 ~V~V~WDVHdWl 257 (310)
.+..+||..+|+
T Consensus 108 ~~~~~~d~~~~~ 119 (123)
T 2k54_A 108 KAWFKIGEPRIV 119 (123)
T ss_dssp EEEEEEEEEECG
T ss_pred EEEEEcCChhhh
Confidence 456677777776
No 26
>3mx7_A FAS apoptotic inhibitory molecule 1; beta sheet, apoptosis; 1.76A {Homo sapiens}
Probab=20.57 E-value=3.1e+02 Score=21.48 Aligned_cols=31 Identities=16% Similarity=0.154 Sum_probs=22.1
Q ss_pred ecCCceEEEEEEecCCCCCCCCCeeEEEEcCEEEEE
Q 021584 191 CDAGTAHDILIKCSGEEDGSRNPVLSVCIDNKKIFQ 226 (310)
Q Consensus 191 ~e~G~~HeI~Iec~~~~~g~~~p~l~V~VDgk~v~q 226 (310)
..++..|.|..|=.+ ....=.|.|||+.+++
T Consensus 11 pl~~~~HkieFeHgt-----ttGkrvi~VDGkev~r 41 (90)
T 3mx7_A 11 ALSDGVHKIEFEHGT-----TSGKRVVYVDGKEEIR 41 (90)
T ss_dssp EETTEEEEEEEEECT-----TTCCEEEEETTEEEEE
T ss_pred cCCCCcEEEEEEecc-----ccceEEEEECCEEEEe
Confidence 357889999998543 2334678999996665
No 27
>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A {Bos taurus}
Probab=20.24 E-value=87 Score=25.90 Aligned_cols=29 Identities=14% Similarity=0.294 Sum_probs=23.4
Q ss_pred cCCceEEEEEEecCCCCCCCCCeeEEEEcCEEEEEE
Q 021584 192 DAGTAHDILIKCSGEEDGSRNPVLSVCIDNKKIFQV 227 (310)
Q Consensus 192 e~G~~HeI~Iec~~~~~g~~~p~l~V~VDgk~v~qV 227 (310)
..|+.|.|.|+-.+ ..+.+.||+..+.+.
T Consensus 85 nDg~WH~V~v~r~~-------~~~~L~VD~~~~~~~ 113 (182)
T 2r16_A 85 NDNEWHTVRVVRRG-------KSLKLTVDDQQAMTG 113 (182)
T ss_dssp CSSSCEEEEEEEET-------TEEEEEETTCCEEEE
T ss_pred CCCCeEEEEEEEEC-------CEEEEEECCceeEeE
Confidence 58899999999764 259999999987653
No 28
>4azz_A Levanase; hydrolase; 1.70A {Bacillus subtilis}
Probab=24.92 E-value=23 Score=29.05 Aligned_cols=31 Identities=10% Similarity=0.354 Sum_probs=25.1
Q ss_pred cCCceEEEEEEecCCCCCCCCCeeEEEEcCEEEEEEee
Q 021584 192 DAGTAHDILIKCSGEEDGSRNPVLSVCIDNKKIFQVKR 229 (310)
Q Consensus 192 e~G~~HeI~Iec~~~~~g~~~p~l~V~VDgk~v~qVkr 229 (310)
+.|+.|.|-|++.+. .+.+.|||+.++.++-
T Consensus 108 ~~g~w~~l~I~~~G~-------~i~~~vnG~~v~~~~D 138 (172)
T 4azz_A 108 DVNKKYHLKTEAEGD-------RFKIYLDDRLVIDAHD 138 (172)
Confidence 478999999998752 4889999998887653
Done!