Query 021586
Match_columns 310
No_of_seqs 197 out of 690
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 04:08:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021586.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021586hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1726 HVA22/DP1 gene product 100.0 8.9E-40 1.9E-44 299.4 16.6 153 1-153 7-159 (225)
2 PF03134 TB2_DP1_HVA22: TB2/DP 99.9 2.4E-27 5.3E-32 188.7 6.4 84 2-87 11-94 (94)
3 KOG1725 Protein involved in me 99.9 2.8E-26 6E-31 205.7 5.2 98 2-101 64-161 (186)
4 COG5052 YOP1 Protein involved 99.8 5.8E-19 1.3E-23 157.5 6.5 97 3-101 66-163 (186)
5 PF09726 Macoilin: Transmembra 70.1 4.6 0.0001 43.6 3.8 58 27-84 28-113 (697)
6 PF10066 DUF2304: Uncharacteri 65.9 30 0.00064 28.7 7.0 57 11-67 18-74 (115)
7 KOG1726 HVA22/DP1 gene product 58.7 24 0.00052 33.5 5.8 76 24-99 97-172 (225)
8 PRK06553 lipid A biosynthesis 53.6 83 0.0018 30.0 8.7 33 26-66 19-51 (308)
9 PF10112 Halogen_Hydrol: 5-bro 51.1 1.7E+02 0.0036 26.2 9.7 30 26-55 4-33 (199)
10 PF02453 Reticulon: Reticulon; 46.1 6.7 0.00015 33.2 0.0 20 87-106 149-168 (169)
11 PF07856 Orai-1: Mediator of C 36.2 73 0.0016 28.9 5.1 78 2-86 74-171 (175)
12 PRK13700 conjugal transfer pro 34.8 2.3E+02 0.005 31.4 9.3 22 25-46 24-45 (732)
13 KOG1962 B-cell receptor-associ 34.3 2.2E+02 0.0048 27.0 8.0 32 32-63 1-33 (216)
14 PF01277 Oleosin: Oleosin; In 32.9 79 0.0017 27.3 4.5 28 95-122 90-117 (118)
15 COG2456 Uncharacterized conser 32.3 1E+02 0.0022 26.6 5.0 22 23-44 37-58 (121)
16 COG2270 Permeases of the major 31.2 58 0.0013 33.8 3.9 57 27-90 89-147 (438)
17 PF04652 DUF605: Vta1 like; I 29.8 3.4E+02 0.0074 26.4 8.9 29 10-41 7-35 (380)
18 PTZ00233 variable surface prot 29.5 80 0.0017 33.4 4.7 64 68-131 4-71 (509)
19 TIGR02893 spore_yabQ spore cor 28.9 2.3E+02 0.005 24.5 6.7 51 30-92 45-95 (130)
20 COG2928 Uncharacterized conser 28.5 54 0.0012 31.2 2.9 21 28-48 20-40 (222)
21 KOG3747 Concentrative Na+-nucl 27.0 5.5E+02 0.012 27.8 10.1 61 30-90 76-143 (602)
22 PF14774 FAM177: FAM177 family 26.2 59 0.0013 28.1 2.6 28 26-53 62-92 (123)
23 PF14975 DUF4512: Domain of un 25.5 20 0.00044 29.5 -0.4 14 77-90 13-26 (88)
24 PF12273 RCR: Chitin synthesis 25.4 37 0.0008 28.6 1.2 10 33-42 2-11 (130)
25 COG3402 Uncharacterized conser 25.2 1.5E+02 0.0032 27.1 5.0 27 24-50 12-39 (161)
26 PF08831 MHCassoc_trimer: Clas 25.0 57 0.0012 26.0 2.1 27 12-38 30-58 (72)
27 COG2832 Uncharacterized protei 25.0 82 0.0018 27.3 3.2 59 32-90 5-63 (119)
28 PF05529 Bap31: B-cell recepto 24.2 1E+02 0.0022 27.5 3.8 24 31-55 3-26 (192)
29 KOG3875 Peroxisomal biogenesis 22.6 2.3E+02 0.0051 28.6 6.2 26 28-53 163-188 (362)
30 PF12825 DUF3818: Domain of un 21.6 8.2E+02 0.018 24.4 10.1 95 22-119 21-136 (341)
31 PRK09174 F0F1 ATP synthase sub 21.5 2.5E+02 0.0054 25.8 5.9 21 83-103 78-98 (204)
32 PF08997 UCR_6-4kD: Ubiquinol- 20.7 1.1E+02 0.0024 23.3 2.8 27 30-57 21-49 (56)
33 PF00664 ABC_membrane: ABC tra 20.5 5.2E+02 0.011 21.7 7.6 11 77-87 159-169 (275)
34 KOG0365 Beta subunit of farnes 20.4 41 0.00088 34.4 0.6 16 26-41 98-113 (423)
No 1
>KOG1726 consensus HVA22/DP1 gene product-related proteins [Defense mechanisms]
Probab=100.00 E-value=8.9e-40 Score=299.39 Aligned_cols=153 Identities=43% Similarity=0.784 Sum_probs=144.7
Q ss_pred CEEEeechHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHhhhhhhccCccchhhhhh
Q 021586 1 MVFGYAYPAYECYKTVEKNKPEIEQLRFWCQYWILVAVLTVCERVGDAFISWVPMYSEAKLAFFVYLWYPKTKGTTYVYD 80 (310)
Q Consensus 1 mlvG~lYPAY~SyKALes~~pd~e~l~~WL~YWIVyalftv~E~~ld~flsWIPfY~e~KL~FlIWL~lP~t~GA~~IY~ 80 (310)
|++|++||||+|||+++.+++|++++++||+||||||+++++|+++|+|++|||||+++|++|++||++|.++|+.+||+
T Consensus 7 ~v~G~~yPAy~tyKavk~~~~~i~el~~W~~YWIv~A~~t~~e~~~d~~lsw~P~Y~e~Kl~fv~wL~~p~t~G~~~vY~ 86 (225)
T KOG1726|consen 7 LVFGYAYPAYATYKAVKSNRKDIRELLRWMMYWIVFAALTVFETLTDFLLSWFPFYSEFKLAFVIWLLSPATKGASYVYR 86 (225)
T ss_pred HHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccccCccHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhhhhcCC
Q 021586 81 SFFRPYVARHENEIDQNLLELRTRAGDMATIYWQKVASYGQTRVFEILQFIASQSTPRPRPAQPQQNARARQP 153 (310)
Q Consensus 81 kfI~P~L~k~E~eID~~L~elr~ra~d~a~~y~q~a~~~gQt~~~eiLq~~asQs~~~~~~~~~~~~~~~~~~ 153 (310)
+|++|++.+||.+||++|.+.|+++.+.+..+++++.+++++.+.+++.+.+.|+.+++++..-.++......
T Consensus 87 ~f~~p~ls~~E~eid~~l~~~k~~~~~~a~~~~~r~l~~~~~~~~~a~~~~~~~~tp~~~~~~~~~~~~~~~~ 159 (225)
T KOG1726|consen 87 KFLRPFLSKHEEEIDRMLVEAKERVYDAAVSILKRALNYAQTYALEAAVFSQGQLTPRLQRSSSDQDLTTIPE 159 (225)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchhhhhhhhcCcc
Confidence 9999999999999999999999999999999999999999999999999999999999887666655444333
No 2
>PF03134 TB2_DP1_HVA22: TB2/DP1, HVA22 family; InterPro: IPR004345 This family includes members from a wide variety of eukaryotes. It includes the TB2/DP1 (deleted in polyposis) protein which in human is deleted in severe forms of familial adenomatous polyposis, an autosomal dominant oncological inherited disease. The family also includes the plant protein of known similarity to TB2/DP1, the HVA22 abscisic acid-induced protein (e.g. Q07764 from SWISSPROT), which is thought to be a regulatory protein.
Probab=99.94 E-value=2.4e-27 Score=188.66 Aligned_cols=84 Identities=38% Similarity=0.913 Sum_probs=80.2
Q ss_pred EEEeechHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHhhhhhhccCccchhhhhhh
Q 021586 2 VFGYAYPAYECYKTVEKNKPEIEQLRFWCQYWILVAVLTVCERVGDAFISWVPMYSEAKLAFFVYLWYPKTKGTTYVYDS 81 (310)
Q Consensus 2 lvG~lYPAY~SyKALes~~pd~e~l~~WL~YWIVyalftv~E~~ld~flsWIPfY~e~KL~FlIWL~lP~t~GA~~IY~k 81 (310)
++|++||+|+|+|+|++++ .+++++||+||+|||+++++|.+++.+++|+|+|+++|++|++||++|+++||++||++
T Consensus 11 ~i~~~yP~~~s~kal~~~~--~~~~~~wL~YWiv~~~~~~~e~~~~~~l~~iP~y~~~K~~~~~wL~~p~~~Ga~~iy~~ 88 (94)
T PF03134_consen 11 LIGILYPAYKSFKALKSKD--KKDLKQWLTYWIVYGLFTLFESFLDFILSWIPFYYEFKLLFLVWLQLPQFQGAEYIYDK 88 (94)
T ss_pred HHHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 5799999999999999884 45899999999999999999999999999999999999999999999999999999999
Q ss_pred hccccc
Q 021586 82 FFRPYV 87 (310)
Q Consensus 82 fI~P~L 87 (310)
+++|++
T Consensus 89 ~i~P~~ 94 (94)
T PF03134_consen 89 FIRPFL 94 (94)
T ss_pred HccccC
Confidence 999985
No 3
>KOG1725 consensus Protein involved in membrane traffic (YOP1/TB2/DP1/HVA22 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.8e-26 Score=205.65 Aligned_cols=98 Identities=33% Similarity=0.713 Sum_probs=91.3
Q ss_pred EEEeechHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHhhhhhhccCccchhhhhhh
Q 021586 2 VFGYAYPAYECYKTVEKNKPEIEQLRFWCQYWILVAVLTVCERVGDAFISWVPMYSEAKLAFFVYLWYPKTKGTTYVYDS 81 (310)
Q Consensus 2 lvG~lYPAY~SyKALes~~pd~e~l~~WL~YWIVyalftv~E~~ld~flsWIPfY~e~KL~FlIWL~lP~t~GA~~IY~k 81 (310)
++|++||+|+|++++++..++ +.++||+||||||+++++|.+.+.+++|+|+||++|++|++||.+|+++|+.+||++
T Consensus 64 ~ig~~yP~y~Sv~aIes~~k~--dD~~wL~YWivys~lslie~~~~~il~~iP~y~~~K~~fl~~l~lP~~~Ga~~iY~~ 141 (186)
T KOG1725|consen 64 LIGFLYPAYASVKAIESPSKD--DDTQWLTYWIVYSILSLVEFFSVAILSWIPFYWYAKLIFLLWLVLPQFNGAAIIYNH 141 (186)
T ss_pred HHHHHHHHHHHHHhhhCCCCc--chHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhccCCCCceeeech
Confidence 579999999999999966543 578999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccchHHHHHHHHHH
Q 021586 82 FFRPYVARHENEIDQNLLEL 101 (310)
Q Consensus 82 fI~P~L~k~E~eID~~L~el 101 (310)
+++|++.+|..+||+..+.-
T Consensus 142 ~vrp~~~~~~~~~~~~~~~~ 161 (186)
T KOG1725|consen 142 IVRPFFLKHSREIDDIEDAN 161 (186)
T ss_pred hhhhhhhhhhhhhhhhhhcc
Confidence 99999999999999887643
No 4
>COG5052 YOP1 Protein involved in membrane traffic [Intracellular trafficking and secretion]
Probab=99.76 E-value=5.8e-19 Score=157.52 Aligned_cols=97 Identities=25% Similarity=0.437 Sum_probs=87.7
Q ss_pred EEeechHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHhhhhhhccCccchhhhhhhh
Q 021586 3 FGYAYPAYECYKTVEKNKPEIEQLRFWCQYWILVAVLTVCERVGDAFISWVPMYSEAKLAFFVYLWYPKTKGTTYVYDSF 82 (310)
Q Consensus 3 vG~lYPAY~SyKALes~~pd~e~l~~WL~YWIVyalftv~E~~ld~flsWIPfY~e~KL~FlIWL~lP~t~GA~~IY~kf 82 (310)
+|+..|++.+.++++..++. +.++||.||+|+++++++|.++..+++|+||||..|.+|+||+..|+|+||..||+++
T Consensus 66 ~~~~lP~~~~l~a~~~~n~~--dd~q~l~ywmV~~~lsaie~~s~~il~~vP~Y~~~K~vFllw~~~prt~GA~~IY~~~ 143 (186)
T COG5052 66 AGFSLPAQLSLVAFYTLNFM--DDTQLLTYWMVFGFLSAIEKYSGAILSKVPFYWTLKNVFLLWLLLPRTEGARIIYDDI 143 (186)
T ss_pred HHHHccHHHHHHHHHcCCch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccCceeeeHHhh
Confidence 57889999999999986543 4489999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccchHH-HHHHHHHH
Q 021586 83 FRPYVARHENE-IDQNLLEL 101 (310)
Q Consensus 83 I~P~L~k~E~e-ID~~L~el 101 (310)
+.|++++|-.. ||+.+.+-
T Consensus 144 i~p~~s~~~~~~IektV~~~ 163 (186)
T COG5052 144 IAPDVSDHGFRTIEKTVKNG 163 (186)
T ss_pred ccccccHHHHHHHHHHHHhh
Confidence 99999999665 77766543
No 5
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=70.09 E-value=4.6 Score=43.63 Aligned_cols=58 Identities=10% Similarity=0.273 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-cccchhHHHHHH-----------------------hhhhhhccC----ccchhhh
Q 021586 27 RFWCQYWILVAVLTVCERVGDAFI-SWVPMYSEAKLA-----------------------FFVYLWYPK----TKGTTYV 78 (310)
Q Consensus 27 ~~WL~YWIVyalftv~E~~ld~fl-sWIPfY~e~KL~-----------------------FlIWL~lP~----t~GA~~I 78 (310)
-..+.+-++|+++.++|.+++|-| .+.|||-+++.+ ++||+++|. |-++.||
T Consensus 28 ~~~~~~~~~w~~~~~~d~~~~~r~e~~~p~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~p~~~~~~~~~~~v 107 (697)
T PF09726_consen 28 FLYVKFLLVWALVLLADFMLEFRFEYLWPFWLLLRSVYDSFKYQGLAFSVFFVCIAFTSDLICLFFIPVHWLFFAASTYV 107 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 345666667777777777777644 344666443321 245566663 4677777
Q ss_pred hhhhcc
Q 021586 79 YDSFFR 84 (310)
Q Consensus 79 Y~kfI~ 84 (310)
+-.||.
T Consensus 108 ~~~~~~ 113 (697)
T PF09726_consen 108 WVQYVW 113 (697)
T ss_pred HHHHhh
Confidence 665554
No 6
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=65.86 E-value=30 Score=28.75 Aligned_cols=57 Identities=16% Similarity=0.285 Sum_probs=40.6
Q ss_pred HHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHhhhhh
Q 021586 11 ECYKTVEKNKPEIEQLRFWCQYWILVAVLTVCERVGDAFISWVPMYSEAKLAFFVYL 67 (310)
Q Consensus 11 ~SyKALes~~pd~e~l~~WL~YWIVyalftv~E~~ld~flsWIPfY~e~KL~FlIWL 67 (310)
-.++.+++++-+.++...|+..|++..++.++=.+++++-.++=+++-.-++|++-.
T Consensus 18 ~ii~~vr~~~l~~~~~l~Wl~~~i~~l~~~ifP~~~~~vA~~lGi~~~~n~lf~~~i 74 (115)
T PF10066_consen 18 FIIRLVRKRKLRLKYSLLWLVFSIILLILSIFPNILDWVAKLLGIGRPPNLLFYLGI 74 (115)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHCCCchhHHHHHHHH
Confidence 345555555444566778999999999999888888888777776666666655443
No 7
>KOG1726 consensus HVA22/DP1 gene product-related proteins [Defense mechanisms]
Probab=58.74 E-value=24 Score=33.48 Aligned_cols=76 Identities=11% Similarity=-0.071 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHhhhhhhccCccchhhhhhhhcccccccchHHHHHHHH
Q 021586 24 EQLRFWCQYWILVAVLTVCERVGDAFISWVPMYSEAKLAFFVYLWYPKTKGTTYVYDSFFRPYVARHENEIDQNLL 99 (310)
Q Consensus 24 e~l~~WL~YWIVyalftv~E~~ld~flsWIPfY~e~KL~FlIWL~lP~t~GA~~IY~kfI~P~L~k~E~eID~~L~ 99 (310)
++...-+.+|....++..+..++..+++|-++|-.=+..+..|...|..+++..+++....|....+...|-+.+.
T Consensus 97 E~eid~~l~~~k~~~~~~a~~~~~r~l~~~~~~~~~a~~~~~~~~tp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (225)
T KOG1726|consen 97 EEEIDRMLVEAKERVYDAAVSILKRALNYAQTYALEAAVFSQGQLTPRLQRSSSDQDLTTIPEESGKKAPDLDVLE 172 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchhhhhhhhcCccccccccCCcccch
Confidence 3456678899999999999999999999999999999999999999999999999999888888776655544443
No 8
>PRK06553 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=53.63 E-value=83 Score=29.96 Aligned_cols=33 Identities=6% Similarity=0.054 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHhhhh
Q 021586 26 LRFWCQYWILVAVLTVCERVGDAFISWVPMYSEAKLAFFVY 66 (310)
Q Consensus 26 l~~WL~YWIVyalftv~E~~ld~flsWIPfY~e~KL~FlIW 66 (310)
+..|+.||+++++ -++++++|++....++..+.
T Consensus 19 ~~~~~~~~l~~~l--------~~~~~~LP~~~~~~~~~~l~ 51 (308)
T PRK06553 19 FAGWLVAQLVFGL--------LGLLRLFPADKAINFFGRLA 51 (308)
T ss_pred HHHHHHHHHHHHH--------HHHHHHCCHHHHHHHHHHHH
Confidence 4445555554332 23577889987766654433
No 9
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=51.09 E-value=1.7e+02 Score=26.22 Aligned_cols=30 Identities=13% Similarity=0.073 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccch
Q 021586 26 LRFWCQYWILVAVLTVCERVGDAFISWVPM 55 (310)
Q Consensus 26 l~~WL~YWIVyalftv~E~~ld~flsWIPf 55 (310)
..+|+.||++-.++.++-.++.++....+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (199)
T PF10112_consen 4 IIRFIFRWILGVLIAAITFLVSFFGFDHSF 33 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 456777777766555555444444333333
No 10
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=46.10 E-value=6.7 Score=33.18 Aligned_cols=20 Identities=20% Similarity=0.393 Sum_probs=0.0
Q ss_pred cccchHHHHHHHHHHHHHHH
Q 021586 87 VARHENEIDQNLLELRTRAG 106 (310)
Q Consensus 87 L~k~E~eID~~L~elr~ra~ 106 (310)
+.+|+.+||+.+..++++.+
T Consensus 149 y~~~~~~Id~~~~~~~~~~~ 168 (169)
T PF02453_consen 149 YEKYQEEIDQYVAKVKEKVK 168 (169)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 35789999999998776654
No 11
>PF07856 Orai-1: Mediator of CRAC channel activity; InterPro: IPR012446 This entry includes Drosophila Orai and human Orai1, Orai2 and Orai3. ORAI-1 GFP reporters are co-expressed with STIM-1 (ER CA(2+) sensors) in the gonad and intestine. The protein has four predicted transmembrane domains with a highly conserved region between TM2 ad TM3. This conserved domain is thought to function in channel regulation. ORAI1-related proteins are required for the production of the calcium channel, CRAC, along with STIM1-related proteins [].
Probab=36.20 E-value=73 Score=28.92 Aligned_cols=78 Identities=12% Similarity=0.338 Sum_probs=41.7
Q ss_pred EEEeechHHHHHHHHhcCCc----cHHHHHHHH-HHHHHH---HHHHHHHHHHHHHhcccchhHH---H---------HH
Q 021586 2 VFGYAYPAYECYKTVEKNKP----EIEQLRFWC-QYWILV---AVLTVCERVGDAFISWVPMYSE---A---------KL 61 (310)
Q Consensus 2 lvG~lYPAY~SyKALes~~p----d~e~l~~WL-~YWIVy---alftv~E~~ld~flsWIPfY~e---~---------KL 61 (310)
+..++.|..++..-+.+.++ ..+.+..|| .-|..- |++..+=.+ .+++||-||+. . =.
T Consensus 74 isT~iL~~I~~~~~~~~~~~~~~sP~~~f~~~cE~~W~~s~~lGi~lFL~~l--~l~~WIKF~~~~~~~aa~~~t~i~~~ 151 (175)
T PF07856_consen 74 ISTCILPSIEAVSFIHNYSPVPPSPHRRFHRYCELAWRFSTVLGIPLFLAEL--ALLGWIKFWDSPSPAAAIAITAILVP 151 (175)
T ss_pred HHHHhHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHheeehhccchHHHHHHHHHHHH
Confidence 34567788887777665321 123455554 245432 333333222 36799999988 1 22
Q ss_pred HhhhhhhccCccchhhhhhhhcccc
Q 021586 62 AFFVYLWYPKTKGTTYVYDSFFRPY 86 (310)
Q Consensus 62 ~FlIWL~lP~t~GA~~IY~kfI~P~ 86 (310)
++++|+. ++.+.|+.++..-
T Consensus 152 ~~li~~~-----~~~~~wr~l~~~~ 171 (175)
T PF07856_consen 152 VLLIFVV-----FIQHFWRSLVSHK 171 (175)
T ss_pred HHHHHHH-----HHHHHHHHHHhcc
Confidence 3444443 4566676666543
No 12
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=34.80 E-value=2.3e+02 Score=31.40 Aligned_cols=22 Identities=14% Similarity=0.098 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021586 25 QLRFWCQYWILVAVLTVCERVG 46 (310)
Q Consensus 25 ~l~~WL~YWIVyalftv~E~~l 46 (310)
+...|+.||+++.++.++-.++
T Consensus 24 qi~~~~~~~~~~~~~~~~~~~~ 45 (732)
T PRK13700 24 QIANIILYCLFIFFWILVGLVL 45 (732)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5778999999987666554433
No 13
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=34.25 E-value=2.2e+02 Score=26.96 Aligned_cols=32 Identities=22% Similarity=0.273 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcc-cchhHHHHHHh
Q 021586 32 YWILVAVLTVCERVGDAFISW-VPMYSEAKLAF 63 (310)
Q Consensus 32 YWIVyalftv~E~~ld~flsW-IPfY~e~KL~F 63 (310)
||.+...+.++|-++-+++.. +|.+..-+++.
T Consensus 1 ~~tlvf~iL~~Eial~~iL~Lpip~r~~~~~~~ 33 (216)
T KOG1962|consen 1 YWTLVFTILYAEIALFLILLLPIPPRRRRKIFK 33 (216)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 799999999999987655432 37766555443
No 14
>PF01277 Oleosin: Oleosin; InterPro: IPR000136 Oleosins [] are the proteinaceous components of plants' lipid storage bodies called oil bodies. Oil bodies are small droplets (0.2 to 1.5 mu-m in diameter) containing mostly triacylglycerol that are surrounded by a phospholipid/ oleosin annulus. Oleosins may have a structural role in stabilising the lipid body during dessication of the seed, by preventing coalescence of the oil. They may also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth. Oleosins are found in the monolayer lipid/ water interface of oil bodies and probably interact with both the lipid and phospholipid moieties. Oleosins are proteins of 16 Kd to 24 Kd and are composed of three domains: an N-terminal hydrophilic region of variable length (from 30 to 60 residues); a central hydrophobic domain of about 70 residues and a C-terminal amphipathic region of variable length (from 60 to 100 residues). The central hydrophobic domain is proposed to be made up of beta-strand structure and to interact with the lipids []. It is the only domain whose sequence is conserved.; GO: 0012511 monolayer-surrounded lipid storage body, 0016021 integral to membrane
Probab=32.89 E-value=79 Score=27.29 Aligned_cols=28 Identities=29% Similarity=0.242 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021586 95 DQNLLELRTRAGDMATIYWQKVASYGQT 122 (310)
Q Consensus 95 D~~L~elr~ra~d~a~~y~q~a~~~gQt 122 (310)
-+.++..|.|..|.+....+|+.++||.
T Consensus 90 ~~q~d~Ak~ri~d~a~~v~~kake~gq~ 117 (118)
T PF01277_consen 90 PDQLDYAKRRIADTASYVGQKAKEVGQK 117 (118)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 3345889999999999889999998874
No 15
>COG2456 Uncharacterized conserved protein [Function unknown]
Probab=32.28 E-value=1e+02 Score=26.65 Aligned_cols=22 Identities=23% Similarity=0.862 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021586 23 IEQLRFWCQYWILVAVLTVCER 44 (310)
Q Consensus 23 ~e~l~~WL~YWIVyalftv~E~ 44 (310)
..++..|..+|++.-+|.++-.
T Consensus 37 ~~~ll~W~~~wv~vlifal~P~ 58 (121)
T COG2456 37 LSDLLFWEAFWVFVLIFALFPE 58 (121)
T ss_pred ccchHHHHHHHHHHHHHHhcch
Confidence 3578999999998877776533
No 16
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=31.16 E-value=58 Score=33.79 Aligned_cols=57 Identities=12% Similarity=0.307 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccch--hHHHHHHhhhhhhccCccchhhhhhhhcccccccc
Q 021586 27 RFWCQYWILVAVLTVCERVGDAFISWVPM--YSEAKLAFFVYLWYPKTKGTTYVYDSFFRPYVARH 90 (310)
Q Consensus 27 ~~WL~YWIVyalftv~E~~ld~flsWIPf--Y~e~KL~FlIWL~lP~t~GA~~IY~kfI~P~L~k~ 90 (310)
++|+..|++.+.. +-..+.|+|- |+...++|++-... .+.++...||.++.-+..+.
T Consensus 89 k~~~~~f~~i~i~------~~~~L~~i~~~s~~~~~l~~~il~~i-~~~~s~Vfyds~L~~~~~k~ 147 (438)
T COG2270 89 KKFFGFFTAIGII------STFLLWFIPPGSYLLLLLLFLILASI-GFEFSNVFYDSMLPRLTTKD 147 (438)
T ss_pred chHHHHHHHHHHH------HHHHHHHhCCCchHHHHHHHHHHHHH-hcchhheehhhHhhhhcCcc
Confidence 3444444444433 3346778876 77777777765544 46899999999988777764
No 17
>PF04652 DUF605: Vta1 like; InterPro: IPR006745 This family contains proteins from the Eukaryota; functionally they are uncharacterised.; PDB: 2RKK_B 2RKL_B 3MHV_A.
Probab=29.82 E-value=3.4e+02 Score=26.36 Aligned_cols=29 Identities=17% Similarity=0.565 Sum_probs=15.3
Q ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHHHHHHH
Q 021586 10 YECYKTVEKNKPEIEQLRFWCQYWILVAVLTV 41 (310)
Q Consensus 10 Y~SyKALes~~pd~e~l~~WL~YWIVyalftv 41 (310)
...-.-|++.++ -+--||.||+|--++..
T Consensus 7 l~~a~e~~~~~p---~v~Y~c~~ya~~~~l~~ 35 (380)
T PF04652_consen 7 LKRAQELEKRDP---VVAYYCRLYAVEQILKL 35 (380)
T ss_dssp HHHHHHHHHCTH---HHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhhcCC---EEhHHHHHHHHHHHcCC
Confidence 334444554433 35677777777554443
No 18
>PTZ00233 variable surface protein Vir18; Provisional
Probab=29.53 E-value=80 Score=33.36 Aligned_cols=64 Identities=11% Similarity=0.202 Sum_probs=46.9
Q ss_pred hccCccchhhhhhhhcccc-c---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021586 68 WYPKTKGTTYVYDSFFRPY-V---ARHENEIDQNLLELRTRAGDMATIYWQKVASYGQTRVFEILQFI 131 (310)
Q Consensus 68 ~lP~t~GA~~IY~kfI~P~-L---~k~E~eID~~L~elr~ra~d~a~~y~q~a~~~gQt~~~eiLq~~ 131 (310)
|+..+.++.-+|++|-.+- + ..|..+|++.|+++..+-..-...-|+++..|...+=.||-.|.
T Consensus 4 ~~~~~~~~~n~yq~~~~~~Cin~Y~~~K~EIEqkId~f~k~~~~nFykew~~I~k~I~~KN~ELK~Cy 71 (509)
T PTZ00233 4 PFRGFNRIINLYQTYKTAPCMNTYSTLKSDIEQKIDDFNKATHTNIYTQWDQLNKYIITKDAELKHCY 71 (509)
T ss_pred ccccchhHHHHHHhhcccchhHhHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhhhhhhhhh
Confidence 4445566777788777654 3 45688999999999877666777779998888887777765554
No 19
>TIGR02893 spore_yabQ spore cortex biosynthesis protein YabQ. YabQ, a protein predicted to span the membrane several times, is found in exactly those genomes whose species perform sporulation in the style of Bacillus subtilis, Clostridium tetani, and others of the Firmicutes. Mutation of this sigma(E)-dependent gene blocks development of the spore cortex. The length of the C-terminal region, including some hydrophobic regions, is rather variable between members.
Probab=28.93 E-value=2.3e+02 Score=24.51 Aligned_cols=51 Identities=18% Similarity=0.306 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHhhhhhhccCccchhhhhhhhcccccccchH
Q 021586 30 CQYWILVAVLTVCERVGDAFISWVPMYSEAKLAFFVYLWYPKTKGTTYVYDSFFRPYVARHEN 92 (310)
Q Consensus 30 L~YWIVyalftv~E~~ld~flsWIPfY~e~KL~FlIWL~lP~t~GA~~IY~kfI~P~L~k~E~ 92 (310)
+.||++.+++...--+. -=|.+++.-+++.+.. .-.+|..++++++.+-..
T Consensus 45 ilFWi~~~~~vF~~L~~-------~N~G~lR~Y~~lg~~~-----G~~lY~~lls~~~~~~l~ 95 (130)
T TIGR02893 45 ILFWIVQALIVFYFLLY-------VNEGEIRFYVFLALLC-----GLAIYQALLSKYYVRILE 95 (130)
T ss_pred HHHHHHHHHHHHHHHHH-------hccchhhHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 56888887776543222 1245566666666553 337888888888776433
No 20
>COG2928 Uncharacterized conserved protein [Function unknown]
Probab=28.46 E-value=54 Score=31.19 Aligned_cols=21 Identities=5% Similarity=0.279 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021586 28 FWCQYWILVAVLTVCERVGDA 48 (310)
Q Consensus 28 ~WL~YWIVyalftv~E~~ld~ 48 (310)
-|+++|++..+|.+++.++..
T Consensus 20 laiT~~vv~~i~~~l~~~~~~ 40 (222)
T COG2928 20 LAITLWVVSWIFGLLDQFVGP 40 (222)
T ss_pred HHHHHHHHHHHHHHHHHhhhh
Confidence 468899999999999888763
No 21
>KOG3747 consensus Concentrative Na+-nucleoside cotransporter CNT1/CNT2 [Nucleotide transport and metabolism; Inorganic ion transport and metabolism]
Probab=27.05 E-value=5.5e+02 Score=27.77 Aligned_cols=61 Identities=13% Similarity=0.396 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHH---HHHhcc---cchhHHHHHHhhh-hhhccCccchhhhhhhhcccccccc
Q 021586 30 CQYWILVAVLTVCERVG---DAFISW---VPMYSEAKLAFFV-YLWYPKTKGTTYVYDSFFRPYVARH 90 (310)
Q Consensus 30 L~YWIVyalftv~E~~l---d~flsW---IPfY~e~KL~FlI-WL~lP~t~GA~~IY~kfI~P~L~k~ 90 (310)
..+|++.+.+.+...-. -.++.| +|+++..-+++++ |.++=+..=...+|+++++|+-.+.
T Consensus 76 ~~~~~~~~~~~~~y~~~llaacilNfq~a~~l~vvt~~~~~~l~~~~lk~~vG~kl~~~~l~p~~~k~ 143 (602)
T KOG3747|consen 76 YFGHIITGILLVVYHGPLLAACILNFQRALPLFVVTLFFIYCLYYWVLKPIVGHKLFRNYLKPFGGKR 143 (602)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCcccchH
Confidence 45677777776665422 234444 6666554443333 2221222233456666666665543
No 22
>PF14774 FAM177: FAM177 family
Probab=26.25 E-value=59 Score=28.10 Aligned_cols=28 Identities=21% Similarity=0.637 Sum_probs=18.2
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHhccc
Q 021586 26 LRFWCQYW---ILVAVLTVCERVGDAFISWV 53 (310)
Q Consensus 26 l~~WL~YW---IVyalftv~E~~ld~flsWI 53 (310)
...|+.|| +...+|.+|+++.+.|-.||
T Consensus 62 w~~~~~~~~~~~~~~~l~~~d~~Ge~lA~~f 92 (123)
T PF14774_consen 62 WGPWLWFWAWRVGTKSLSGCDYLGEKLASFF 92 (123)
T ss_pred cHHHHHHHHHHHHHhHhhHHhhhhhHHHHHh
Confidence 56788888 45556667777776554443
No 23
>PF14975 DUF4512: Domain of unknown function (DUF4512)
Probab=25.48 E-value=20 Score=29.46 Aligned_cols=14 Identities=29% Similarity=0.985 Sum_probs=11.0
Q ss_pred hhhhhhcccccccc
Q 021586 77 YVYDSFFRPYVARH 90 (310)
Q Consensus 77 ~IY~kfI~P~L~k~ 90 (310)
|||++||.|++.++
T Consensus 13 wIykkFlqP~i~~~ 26 (88)
T PF14975_consen 13 WIYKKFLQPYIYPF 26 (88)
T ss_pred HHHHHHHHHHHHHH
Confidence 67889999987654
No 24
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=25.41 E-value=37 Score=28.63 Aligned_cols=10 Identities=40% Similarity=1.099 Sum_probs=5.3
Q ss_pred HHHHHHHHHH
Q 021586 33 WILVAVLTVC 42 (310)
Q Consensus 33 WIVyalftv~ 42 (310)
|++|++|.++
T Consensus 2 W~l~~iii~~ 11 (130)
T PF12273_consen 2 WVLFAIIIVA 11 (130)
T ss_pred eeeHHHHHHH
Confidence 5555555444
No 25
>COG3402 Uncharacterized conserved protein [Function unknown]
Probab=25.21 E-value=1.5e+02 Score=27.05 Aligned_cols=27 Identities=22% Similarity=0.566 Sum_probs=20.3
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHh
Q 021586 24 EQLRFW-CQYWILVAVLTVCERVGDAFI 50 (310)
Q Consensus 24 e~l~~W-L~YWIVyalftv~E~~ld~fl 50 (310)
+-+..| ++||+.++++.++-..+..+.
T Consensus 12 k~~~vw~~~~~i~~~l~Ll~av~~~~~~ 39 (161)
T COG3402 12 KVLTVWRVQEWIPIALVLLIAVAAGVLL 39 (161)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788 999999999988866554443
No 26
>PF08831 MHCassoc_trimer: Class II MHC-associated invariant chain trimerisation domain; InterPro: IPR011988 This entry represents the trimerisation domain of the MHC class II-associated invariant chain (Ii). Ii plays a critical role in the assembly of the MHC, as well as in MHC II antigen processing by stabilising peptide-free class II alpha/beta heterodimers in a complex soon after their synthesis and directing transport of the complex from the endoplasmic reticulum to compartments where peptide loading of class II takes place []. In antigen-presenting cells (APCs), loading of MHC II molecules with peptides is regulated by Ii, which blocks MHC II antigen-binding sites in pre-endosomal compartments []. Several molecules then act upon MHC II molecules in endosomes to facilitate peptide loading: Ii-degrading proteases, the peptide exchange factor, human leukocyte antigen-DM (HLA-DM), and its modulator, HLA-DO (DO). The Invariant chain contains a single transmembrane domain. Ii first assembles into a trimer and then associates with three class II alpha/beta MHC heterodimers. Although the membrane-proximal region of the Ii luminal domain is structurally disordered, the C-terminal segment of the luminal domain is largely alpha-helical and contains a major interaction site for the Ii trimer []. More information about these proteins can be found at Protein of the Month: MHC [].; GO: 0042289 MHC class II protein binding, 0006886 intracellular protein transport, 0006955 immune response, 0019882 antigen processing and presentation, 0016020 membrane; PDB: 1IIE_C.
Probab=25.04 E-value=57 Score=26.03 Aligned_cols=27 Identities=15% Similarity=0.517 Sum_probs=17.3
Q ss_pred HHHHHhcCC--ccHHHHHHHHHHHHHHHH
Q 021586 12 CYKTVEKNK--PEIEQLRFWCQYWILVAV 38 (310)
Q Consensus 12 SyKALes~~--pd~e~l~~WL~YWIVyal 38 (310)
-++.|++.- .|=.....|+.||.+|-+
T Consensus 30 NL~~LK~~M~~~~Wk~FEsWM~~WLlFqM 58 (72)
T PF08831_consen 30 NLKHLKNQMNESDWKSFESWMHQWLLFQM 58 (72)
T ss_dssp HHHHHHHHS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcchhhHHHHHHHHHHHHHHHH
Confidence 455666432 122457899999999754
No 27
>COG2832 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.02 E-value=82 Score=27.34 Aligned_cols=59 Identities=17% Similarity=0.267 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchhHHHHHHhhhhhhccCccchhhhhhhhcccccccc
Q 021586 32 YWILVAVLTVCERVGDAFISWVPMYSEAKLAFFVYLWYPKTKGTTYVYDSFFRPYVARH 90 (310)
Q Consensus 32 YWIVyalftv~E~~ld~flsWIPfY~e~KL~FlIWL~lP~t~GA~~IY~kfI~P~L~k~ 90 (310)
-|++.|++.+.=-+++.|+..+|-=-++=+++.+|.=....--+=.++++++.|++.++
T Consensus 5 i~i~iGfl~l~LGIiGifLPlLPTTPFlLLaa~cFaRsSpRf~~WLl~~~~fg~~v~~~ 63 (119)
T COG2832 5 IYIILGFLSLALGIIGIFLPLLPTTPFLLLAAACFARSSPRFHAWLLRHKYFGPYVRDW 63 (119)
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHcCCcHHHHHHHcCchhhHHHHHH
Confidence 37888988888888888888887666665555555422221222333445555555544
No 28
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=24.22 E-value=1e+02 Score=27.47 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccch
Q 021586 31 QYWILVAVLTVCERVGDAFISWVPM 55 (310)
Q Consensus 31 ~YWIVyalftv~E~~ld~flsWIPf 55 (310)
.||.+..++.++|-++-.++ .+||
T Consensus 3 l~~~lvf~~L~~Ei~~~~lL-~lPl 26 (192)
T PF05529_consen 3 LQWSLVFGLLYAEIAVLLLL-VLPL 26 (192)
T ss_pred cHHHHHHHHHHHHHHHHHHH-HHhC
Confidence 48988888889998776555 4444
No 29
>KOG3875 consensus Peroxisomal biogenesis protein peroxin [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.61 E-value=2.3e+02 Score=28.65 Aligned_cols=26 Identities=4% Similarity=0.068 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Q 021586 28 FWCQYWILVAVLTVCERVGDAFISWV 53 (310)
Q Consensus 28 ~WL~YWIVyalftv~E~~ld~flsWI 53 (310)
..-.+|.+|++|-.+-++-.+++.||
T Consensus 163 ~l~s~f~~fAl~r~lk~lyR~~l~~L 188 (362)
T KOG3875|consen 163 SLGSFFGIFALFRRLKILYRLLLKML 188 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456777776666664444455443
No 30
>PF12825 DUF3818: Domain of unknown function in PX-proteins (DUF3818); InterPro: IPR024554 The function of this domain is not known, but it is almost always found C-terminal to a PX-domain (IPR001683 from INTERPRO).
Probab=21.57 E-value=8.2e+02 Score=24.45 Aligned_cols=95 Identities=15% Similarity=0.293 Sum_probs=58.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHH---H----HH--HHHHhcccchh---HHH---------HHHhhhhhhccCccchhhhhh
Q 021586 22 EIEQLRFWCQYWILVAVLTVC---E----RV--GDAFISWVPMY---SEA---------KLAFFVYLWYPKTKGTTYVYD 80 (310)
Q Consensus 22 d~e~l~~WL~YWIVyalftv~---E----~~--ld~flsWIPfY---~e~---------KL~FlIWL~lP~t~GA~~IY~ 80 (310)
.......||..|+-..++.+| + .+ +..+..++|+. ..+ |-+.=++|.-| -|+.=|..
T Consensus 21 ~~~~~~ew~~i~lAs~iy~~Fv~~d~s~~~~~~~krlH~l~PY~~ikq~Lri~Np~~m~~gm~dLfLaqp--fG~~sLlQ 98 (341)
T PF12825_consen 21 QYQKFIEWCRIELASTIYQLFVGSDNSPELFAQLKRLHSLIPYTVIKQILRITNPATMMKGMMDLFLAQP--FGGRSLLQ 98 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHccCC--CCcCcHHH
Confidence 334578899999844444332 2 11 23456677743 222 33334444444 57888888
Q ss_pred hhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021586 81 SFFRPYVARHENEIDQNLLELRTRAGDMATIYWQKVASY 119 (310)
Q Consensus 81 kfI~P~L~k~E~eID~~L~elr~ra~d~a~~y~q~a~~~ 119 (310)
+++.=.|..--.++++.+..++.+.++ ....+++...|
T Consensus 99 rifs~~L~~d~~~~~k~i~~le~~i~~-~~~~~~~ik~~ 136 (341)
T PF12825_consen 99 RIFSMVLNDDIKEFEKEIDKLEKKIGD-SPEMCEKIKAF 136 (341)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcC-HHHHHHHHHHH
Confidence 999988888788888999999887777 33334444333
No 31
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=21.51 E-value=2.5e+02 Score=25.83 Aligned_cols=21 Identities=14% Similarity=0.200 Sum_probs=12.7
Q ss_pred cccccccchHHHHHHHHHHHH
Q 021586 83 FRPYVARHENEIDQNLLELRT 103 (310)
Q Consensus 83 I~P~L~k~E~eID~~L~elr~ 103 (310)
|.-+|.+-...|..-|.+...
T Consensus 78 I~~vLe~R~~~I~~~L~~Ae~ 98 (204)
T PRK09174 78 IGGIIETRRDRIAQDLDQAAR 98 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555666667777766543
No 32
>PF08997 UCR_6-4kD: Ubiquinol-cytochrome C reductase complex, 6.4kD protein; InterPro: IPR015089 The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is an essential component of the mitochondrial cellular respiratory chain. This family represents the 6.4 kDa protein, which may be closely linked to the iron-sulphur protein in the complex and function as an iron-sulphur protein-binding factor []. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0009055 electron carrier activity; PDB: 1NTM_K 1SQV_K 1SQB_K 1NU1_K 1SQQ_K 1BE3_K 1BGY_W 2YBB_k 2FYU_K 1L0N_K ....
Probab=20.69 E-value=1.1e+02 Score=23.30 Aligned_cols=27 Identities=22% Similarity=0.477 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHH--HHhcccchhH
Q 021586 30 CQYWILVAVLTVCERVGD--AFISWVPMYS 57 (310)
Q Consensus 30 L~YWIVyalftv~E~~ld--~flsWIPfY~ 57 (310)
+.+|-..+.+.++ ++.| .++.|||+|.
T Consensus 21 ~~~~G~~~~l~lv-y~TDWklIl~yvP~~n 49 (56)
T PF08997_consen 21 AAAWGAAGGLALV-YFTDWKLILQYVPYYN 49 (56)
T ss_dssp HHHHHHHHHHHHH-HHHTTHHHHTTSSSTC
T ss_pred HHHHhhhhhhhee-eecchHhhhhhccccC
Confidence 3455554444444 5556 3779999984
No 33
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=20.48 E-value=5.2e+02 Score=21.69 Aligned_cols=11 Identities=9% Similarity=0.446 Sum_probs=4.4
Q ss_pred hhhhhhccccc
Q 021586 77 YVYDSFFRPYV 87 (310)
Q Consensus 77 ~IY~kfI~P~L 87 (310)
+++.+.++...
T Consensus 159 ~~~~~~~~~~~ 169 (275)
T PF00664_consen 159 FIFSKKIRKLS 169 (275)
T ss_dssp HHHHHHHHHHH
T ss_pred hhhcccccccc
Confidence 33344444333
No 34
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=20.43 E-value=41 Score=34.36 Aligned_cols=16 Identities=38% Similarity=0.827 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 021586 26 LRFWCQYWILVAVLTV 41 (310)
Q Consensus 26 l~~WL~YWIVyalftv 41 (310)
-+.||.|||+-++-.+
T Consensus 98 SR~Wm~YWil~sl~lL 113 (423)
T KOG0365|consen 98 SRPWMCYWILNSLALL 113 (423)
T ss_pred CcchhHHHHHHHHHHh
Confidence 3689999999887653
Done!