Query 021586
Match_columns 310
No_of_seqs 197 out of 690
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 06:18:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021586.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021586hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iot_A Maltose-binding protein 40.2 27 0.00093 32.5 4.5 8 24-31 274-281 (449)
2 4hkr_A Calcium release-activat 18.4 1.6E+02 0.0053 26.7 5.1 50 49-104 133-193 (214)
3 1iie_A Protein (HLA-DR antigen 18.2 70 0.0024 24.6 2.4 28 11-38 31-60 (75)
4 3trt_A Vimentin; cytoskeleton, 14.3 3.2E+02 0.011 19.7 5.3 41 92-132 5-45 (77)
5 2qm4_A Non-homologous END-join 14.0 29 0.001 31.5 -0.7 46 53-107 117-165 (235)
6 2zxj_A Transcriptional regulat 13.3 2.3E+02 0.0079 22.4 4.5 50 58-107 41-90 (120)
7 2ki9_A Cannabinoid receptor 2; 12.4 97 0.0033 18.8 1.6 10 47-56 14-23 (33)
8 2kwt_A Protease NS2-3; NS2 dom 12.1 79 0.0027 20.8 1.1 22 26-55 7-28 (33)
9 4aw6_A CAAX prenyl protease 1 11.4 1.9E+02 0.0064 28.7 4.1 22 74-95 210-231 (482)
10 2ou1_A Apolipoprotein A-II; hi 10.6 2.2E+02 0.0076 21.8 3.3 23 105-127 7-29 (77)
No 1
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=40.21 E-value=27 Score=32.47 Aligned_cols=8 Identities=13% Similarity=0.144 Sum_probs=3.6
Q ss_pred HHHHHHHH
Q 021586 24 EQLRFWCQ 31 (310)
Q Consensus 24 e~l~~WL~ 31 (310)
+....||.
T Consensus 274 e~A~~fl~ 281 (449)
T 3iot_A 274 ELAKEFLE 281 (449)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444554
No 2
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=18.35 E-value=1.6e+02 Score=26.73 Aligned_cols=50 Identities=14% Similarity=0.276 Sum_probs=30.2
Q ss_pred HhcccchhHHHH-----------HHhhhhhhccCccchhhhhhhhcccccccchHHHHHHHHHHHHH
Q 021586 49 FISWVPMYSEAK-----------LAFFVYLWYPKTKGTTYVYDSFFRPYVARHENEIDQNLLELRTR 104 (310)
Q Consensus 49 flsWIPfY~e~K-----------L~FlIWL~lP~t~GA~~IY~kfI~P~L~k~E~eID~~L~elr~r 104 (310)
+++|+-||..-. -+++++++ -|-..|++++.--+.++..+|+.. ..++..
T Consensus 133 ll~WVKF~~~~~~aa~~~t~vliPv~i~F~~-----Fa~hFYrsL~~hk~e~~~~~i~el-~~~~~~ 193 (214)
T 4hkr_A 133 ILCWVKFYDLSRRAAWSATVVLIPVMIIFMA-----FAIHFYRSLVSHKYEVTVSGIREL-EMLKEQ 193 (214)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTHHHHHHHHH-----HHHHHHHHHHHTHHHHHHHHHHHH-HHHHHH
T ss_pred HhheEEeecCCcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 678999987621 12233333 356778888887777777666654 344433
No 3
>1iie_A Protein (HLA-DR antigens associated invariant chain); major histocompatibility complex, antigen processing, oligomerization, chaperonin; NMR {Homo sapiens} SCOP: a.109.1.1
Probab=18.20 E-value=70 Score=24.61 Aligned_cols=28 Identities=14% Similarity=0.498 Sum_probs=17.8
Q ss_pred HHHHHHhcCCc--cHHHHHHHHHHHHHHHH
Q 021586 11 ECYKTVEKNKP--EIEQLRFWCQYWILVAV 38 (310)
Q Consensus 11 ~SyKALes~~p--d~e~l~~WL~YWIVyal 38 (310)
+-++.|++.-. |=.....|+.||.+|-+
T Consensus 31 ~NLk~LK~~m~~~dWk~FEsWM~~WLLFeM 60 (75)
T 1iie_A 31 ENLRHLKNTMETIDWKVFESWMHHWLLFEM 60 (75)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcChhhHHhHHHHHHHHHHHHH
Confidence 34566665421 22357899999999754
No 4
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=14.30 E-value=3.2e+02 Score=19.66 Aligned_cols=41 Identities=7% Similarity=0.156 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021586 92 NEIDQNLLELRTRAGDMATIYWQKVASYGQTRVFEILQFIA 132 (310)
Q Consensus 92 ~eID~~L~elr~ra~d~a~~y~q~a~~~gQt~~~eiLq~~a 132 (310)
.+++..|.++|..-.+++......+-.+-+.++.++-..+.
T Consensus 5 ~DL~~il~eiRaQYE~ia~knr~EaE~~y~~k~eel~~~~~ 45 (77)
T 3trt_A 5 PDCTAAMRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAAN 45 (77)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888788877777777777777766544433
No 5
>2qm4_A Non-homologous END-joining factor 1; XRCC4 like factor, homodimer, beta-sandwich, coiled-coil, recombination; HET: MSE; 2.30A {Homo sapiens} PDB: 3sr2_C* 2r9a_A 3q4f_E* 3rwr_D*
Probab=14.00 E-value=29 Score=31.48 Aligned_cols=46 Identities=13% Similarity=0.252 Sum_probs=32.3
Q ss_pred cchhHHHHHHhhhhhhccCccchhhhhhhhccccccc---chHHHHHHHHHHHHHHHH
Q 021586 53 VPMYSEAKLAFFVYLWYPKTKGTTYVYDSFFRPYVAR---HENEIDQNLLELRTRAGD 107 (310)
Q Consensus 53 IPfY~e~KL~FlIWL~lP~t~GA~~IY~kfI~P~L~k---~E~eID~~L~elr~ra~d 107 (310)
+||||.+.|.- .....+|+.+|.|++.- .+..++..++.++.|-.+
T Consensus 117 lPlkW~fhL~~---------~~~s~l~~~LilPLl~~~~~l~~q~~~L~~lL~~KD~e 165 (235)
T 2qm4_A 117 LPFYWNFHCML---------ASPSLVSQHLIRPLMGMSLALQCQVRELATLLHMKDLE 165 (235)
T ss_dssp EEEEEEEEEEE---------CCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEee---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777765432 25668999999999864 456777777777766443
No 6
>2zxj_A Transcriptional regulatory protein WALR; two-component system, YYCG, response regulator, helix-turn-H motif, DNA-binding domain; 1.87A {Staphylococcus aureus} PDB: 2d1v_A
Probab=13.26 E-value=2.3e+02 Score=22.40 Aligned_cols=50 Identities=12% Similarity=0.125 Sum_probs=29.5
Q ss_pred HHHHHhhhhhhccCccchhhhhhhhcccccccchHHHHHHHHHHHHHHHH
Q 021586 58 EAKLAFFVYLWYPKTKGTTYVYDSFFRPYVARHENEIDQNLLELRTRAGD 107 (310)
Q Consensus 58 e~KL~FlIWL~lP~t~GA~~IY~kfI~P~L~k~E~eID~~L~elr~ra~d 107 (310)
+++++.++.--..+.-.-..|++.+-..-.......||..|..||.+.++
T Consensus 41 E~~lL~~L~~~~g~vvsre~L~~~vWg~~~~~~~~~l~v~I~rLRkKL~~ 90 (120)
T 2zxj_A 41 EFELFHYLSKHMGQVMTREHLLQTVWGYDYFGDVRTVDVTIRRLREKIED 90 (120)
T ss_dssp HHHHHHHHHTTTTCCBCHHHHHHHHHCTTCCSCTHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHhCCCceEcHHHHHHHhcCCCCCCCCcChHHHHHHHHHHHhh
Confidence 34444443333333334455666555443444567899999999988764
No 7
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic}
Probab=12.37 E-value=97 Score=18.81 Aligned_cols=10 Identities=30% Similarity=0.850 Sum_probs=7.5
Q ss_pred HHHhcccchh
Q 021586 47 DAFISWVPMY 56 (310)
Q Consensus 47 d~flsWIPfY 56 (310)
-++++|+|++
T Consensus 14 ~F~icW~P~~ 23 (33)
T 2ki9_A 14 VLLICWFPVL 23 (33)
T ss_dssp HHTTTSSHHH
T ss_pred HHHHHHhHHH
Confidence 3578999974
No 8
>2kwt_A Protease NS2-3; NS2 domain, membrane protein, viral prote; NMR {Hepatitis c virus}
Probab=12.06 E-value=79 Score=20.83 Aligned_cols=22 Identities=36% Similarity=0.845 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccch
Q 021586 26 LRFWCQYWILVAVLTVCERVGDAFISWVPM 55 (310)
Q Consensus 26 l~~WL~YWIVyalftv~E~~ld~flsWIPf 55 (310)
+.-||+|||+ -+|.. +--|+|-
T Consensus 7 ~lWWlqYfi~-----R~EA~---l~vWvPp 28 (33)
T 2kwt_A 7 LIWWLQYFIT-----RAEAH---LQVWIPP 28 (33)
T ss_dssp THHHHHHHHH-----HHHHH---HTTSCCT
T ss_pred HHHHHHHHHH-----HHHHH---HHhhCCC
Confidence 4578888876 44543 3457764
No 9
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=11.41 E-value=1.9e+02 Score=28.68 Aligned_cols=22 Identities=9% Similarity=0.250 Sum_probs=16.7
Q ss_pred chhhhhhhhcccccccchHHHH
Q 021586 74 GTTYVYDSFFRPYVARHENEID 95 (310)
Q Consensus 74 GA~~IY~kfI~P~L~k~E~eID 95 (310)
...+||-.+|.|++.++++-=|
T Consensus 210 ~~~~iyP~~I~PLfnk~~Pl~d 231 (482)
T 4aw6_A 210 VLVTIYADYIAPLFDKFTPLPE 231 (482)
T ss_dssp HHHHHHHHHTHHHHSCEEECCS
T ss_pred HHHHHHHHHHHHHcCCCccCCc
Confidence 3457888999999998866544
No 10
>2ou1_A Apolipoprotein A-II; high density lipoproteins, helix, cholesterol metabolism X-RAY diffraction, lipid binding protein; 2.00A {Homo sapiens} PDB: 1l6l_A
Probab=10.58 E-value=2.2e+02 Score=21.78 Aligned_cols=23 Identities=22% Similarity=0.533 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021586 105 AGDMATIYWQKVASYGQTRVFEI 127 (310)
Q Consensus 105 a~d~a~~y~q~a~~~gQt~~~ei 127 (310)
+..++..|||.+.+||++.+...
T Consensus 7 ~Qsl~SqYfQt~TdyGKDL~EKa 29 (77)
T 2ou1_A 7 VESLVSQYFQTVTDYGKDLMEKV 29 (77)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHc
Done!