Query 021586
Match_columns 310
No_of_seqs 197 out of 690
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 06:18:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021586.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021586hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fyuk1 f.23.15.1 (K:1-53) Sub 26.6 19 0.0014 24.4 2.4 27 30-57 21-49 (53)
2 d1iiea_ a.109.1.1 (A:) Class I 22.7 20 0.0015 25.8 2.1 28 11-38 31-60 (75)
3 d1m56d_ f.23.8.1 (D:) Bacteria 19.0 36 0.0026 21.9 2.5 27 42-68 12-38 (42)
4 d1qled_ f.23.8.1 (D:) Bacteria 18.6 37 0.0027 22.0 2.5 27 42-68 13-39 (43)
5 d1gpea2 d.16.1.1 (A:329-524) G 12.9 31 0.0023 27.5 1.2 42 61-102 97-145 (196)
6 d1kgsa1 a.4.6.1 (A:124-225) Ph 10.5 1.5E+02 0.011 20.6 4.3 36 72-107 47-82 (102)
7 d1eysh2 f.23.10.1 (H:7-43) Pho 9.9 1.2E+02 0.0088 18.8 3.0 8 32-39 13-20 (37)
8 d1vpua_ g.34.1.1 (A:) HIV-1 VP 9.9 55 0.004 21.3 1.4 17 93-109 2-18 (45)
9 d1nekd_ f.21.2.2 (D:) Succinat 9.7 19 0.0014 26.6 -1.1 32 54-85 53-84 (113)
10 d1opca_ a.4.6.1 (A:) OmpR {Esc 9.7 1E+02 0.0076 21.1 3.1 51 58-108 29-79 (99)
No 1
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=26.58 E-value=19 Score=24.41 Aligned_cols=27 Identities=22% Similarity=0.540 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHH--HhcccchhH
Q 021586 30 CQYWILVAVLTVCERVGDA--FISWVPMYS 57 (310)
Q Consensus 30 L~YWIVyalftv~E~~ld~--flsWIPfY~ 57 (310)
+.+|-..+.+.++ ++.|+ |+.|+|+|.
T Consensus 21 ~~~~G~a~gl~lv-y~TDWklil~yvPyy~ 49 (53)
T d2fyuk1 21 ASLWGAVGAVGLV-WATDWRLILDWVPYIN 49 (53)
T ss_dssp HHHHHHHHHHHHH-HHHTCHHHHTSSSSCC
T ss_pred hhhhhhhhheeee-eeehHHHHHhhhhhhc
Confidence 4556555555444 56664 789999984
No 2
>d1iiea_ a.109.1.1 (A:) Class II MHC-associated invariant chain ectoplasmic trimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.72 E-value=20 Score=25.82 Aligned_cols=28 Identities=14% Similarity=0.498 Sum_probs=17.9
Q ss_pred HHHHHHhcCCc--cHHHHHHHHHHHHHHHH
Q 021586 11 ECYKTVEKNKP--EIEQLRFWCQYWILVAV 38 (310)
Q Consensus 11 ~SyKALes~~p--d~e~l~~WL~YWIVyal 38 (310)
+-++.|++.-. |=.....|+.||.+|-+
T Consensus 31 ~NLk~LK~~M~~~dWk~FEsWM~~WLlFeM 60 (75)
T d1iiea_ 31 ENLRHLKNTMETIDWKVFESWMHHWLLFEM 60 (75)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchhhHHHHHHHHHHHHHHHH
Confidence 34566665321 22457899999999754
No 3
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=19.04 E-value=36 Score=21.94 Aligned_cols=27 Identities=19% Similarity=0.221 Sum_probs=16.5
Q ss_pred HHHHHHHHhcccchhHHHHHHhhhhhh
Q 021586 42 CERVGDAFISWVPMYSEAKLAFFVYLW 68 (310)
Q Consensus 42 ~E~~ld~flsWIPfY~e~KL~FlIWL~ 68 (310)
-|.-+|.|+.|.-....+-++++|||.
T Consensus 12 QEKTF~gFik~~t~~~i~~i~~liflA 38 (42)
T d1m56d_ 12 QEKTFAGFVRMVTWAAVVIVAALIFLA 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666664
No 4
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=18.61 E-value=37 Score=21.97 Aligned_cols=27 Identities=22% Similarity=0.169 Sum_probs=17.0
Q ss_pred HHHHHHHHhcccchhHHHHHHhhhhhh
Q 021586 42 CERVGDAFISWVPMYSEAKLAFFVYLW 68 (310)
Q Consensus 42 ~E~~ld~flsWIPfY~e~KL~FlIWL~ 68 (310)
-|.-+|.|+.|.-....+-++++|||.
T Consensus 13 QEkTF~gFi~~~t~~~i~~i~~liflA 39 (43)
T d1qled_ 13 QQATFAGFIKGATWVSILSIAVLVFLA 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666666666666664
No 5
>d1gpea2 d.16.1.1 (A:329-524) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}
Probab=12.91 E-value=31 Score=27.48 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=30.3
Q ss_pred HHhhhhhhccCccchhhh-----hh--hhcccccccchHHHHHHHHHHH
Q 021586 61 LAFFVYLWYPKTKGTTYV-----YD--SFFRPYVARHENEIDQNLLELR 102 (310)
Q Consensus 61 L~FlIWL~lP~t~GA~~I-----Y~--kfI~P~L~k~E~eID~~L~elr 102 (310)
+.+.+|+++|..+|...| ++ -.|.|-+..|+.+++..+.-+|
T Consensus 97 ~~~~~~~l~P~SrG~V~l~S~dP~~~pp~I~pnyl~~~~D~~~~~~~~r 145 (196)
T d1gpea2 97 INFDLWDLIPFTRGSVHILSSDPYLWQFANDPKFFLNEFDLLGQAAASK 145 (196)
T ss_dssp EEEEEEESSCCCCBEEEESSSCGGGTCEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEeeeccCCccceEEEeeCCCchhcccccchhhcCCchHHHHHHHHHH
Confidence 668899999999999877 33 2566656667777776666554
No 6
>d1kgsa1 a.4.6.1 (A:124-225) PhoB {Thermotoga maritima [TaxId: 2336]}
Probab=10.47 E-value=1.5e+02 Score=20.57 Aligned_cols=36 Identities=6% Similarity=0.087 Sum_probs=21.5
Q ss_pred ccchhhhhhhhcccccccchHHHHHHHHHHHHHHHH
Q 021586 72 TKGTTYVYDSFFRPYVARHENEIDQNLLELRTRAGD 107 (310)
Q Consensus 72 t~GA~~IY~kfI~P~L~k~E~eID~~L~elr~ra~d 107 (310)
.---..|++.+-..-....+..||..|..||.+..+
T Consensus 47 vvs~~~l~~~vw~~~~~~~~~~l~~~I~rLRkkL~~ 82 (102)
T d1kgsa1 47 VVTKEELQEHLWSFDDEVFSDVLRSHIKNLRKKVDK 82 (102)
T ss_dssp CEEHHHHHHHCC-----CHHHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHhhcCCCcccchhHHHHHHHHHHHHhhc
Confidence 344556666655443444567799999999987654
No 7
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=9.94 E-value=1.2e+02 Score=18.81 Aligned_cols=8 Identities=25% Similarity=0.941 Sum_probs=4.1
Q ss_pred HHHHHHHH
Q 021586 32 YWILVAVL 39 (310)
Q Consensus 32 YWIVyalf 39 (310)
||+.|+.+
T Consensus 13 Fw~FFagL 20 (37)
T d1eysh2 13 FWLFFFGL 20 (37)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 56555443
No 8
>d1vpua_ g.34.1.1 (A:) HIV-1 VPU cytoplasmic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=9.91 E-value=55 Score=21.28 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021586 93 EIDQNLLELRTRAGDMA 109 (310)
Q Consensus 93 eID~~L~elr~ra~d~a 109 (310)
.||+++..+|.|+.|-+
T Consensus 2 kIdrLi~RIrERAEDSG 18 (45)
T d1vpua_ 2 QIDRLIDRITERAEDSG 18 (45)
T ss_dssp CHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHHcccCC
Confidence 39999999999998755
No 9
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=9.75 E-value=19 Score=26.56 Aligned_cols=32 Identities=13% Similarity=0.119 Sum_probs=21.7
Q ss_pred chhHHHHHHhhhhhhccCccchhhhhhhhccc
Q 021586 54 PMYSEAKLAFFVYLWYPKTKGTTYVYDSFFRP 85 (310)
Q Consensus 54 PfY~e~KL~FlIWL~lP~t~GA~~IY~kfI~P 85 (310)
|+-..+=++|++-+.+-..-|-..|.+.|+++
T Consensus 53 ~~~~il~~l~l~~~~~H~~lGl~~IieDYi~~ 84 (113)
T d1nekd_ 53 AFTKVFTLLALFSILIHAWIGMWQVLTDYVKP 84 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred hHHHHHHHHHHHHHHHHHHHhHhhhHHHhcCC
Confidence 55555555666666666667888888888875
No 10
>d1opca_ a.4.6.1 (A:) OmpR {Escherichia coli [TaxId: 562]}
Probab=9.66 E-value=1e+02 Score=21.14 Aligned_cols=51 Identities=12% Similarity=-0.026 Sum_probs=29.5
Q ss_pred HHHHHhhhhhhccCccchhhhhhhhcccccccchHHHHHHHHHHHHHHHHH
Q 021586 58 EAKLAFFVYLWYPKTKGTTYVYDSFFRPYVARHENEIDQNLLELRTRAGDM 108 (310)
Q Consensus 58 e~KL~FlIWL~lP~t~GA~~IY~kfI~P~L~k~E~eID~~L~elr~ra~d~ 108 (310)
+++++-++..-..+.---..|++.+-..-....+..||..+..||.+.++.
T Consensus 29 E~~lL~~L~~~~g~~vsr~~L~~~vwg~~~~~~~~~l~~~I~rLRkkl~~~ 79 (99)
T d1opca_ 29 EFAVLKALVSHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEED 79 (99)
T ss_dssp HHHHHHHHHHSTTCCEEHHHHHHHHCCSSSCTTSSCHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHhccceeccHHHHHHHhcCCccccccccHHHHHHHHHHHHhhC
Confidence 344444433333333344556655544334445667999999999887653
Done!