BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021587
(310 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GUH1|PUB33_ARATH U-box domain-containing protein 33 OS=Arabidopsis thaliana GN=PUB33
PE=2 SV=2
Length = 834
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 79/178 (44%), Gaps = 11/178 (6%)
Query: 113 IYVAVGKSQS-SMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLE 171
I+VAV K + S L W L++ I LIHV + +P K P V E++
Sbjct: 47 IFVAVDKHVAKSKSTLIWALQNTGGKK--ICLIHVHQPSQMIPLMGAKFPVGAVKEEEVR 104
Query: 172 TFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTK 231
F +E K +L +L C Q V + + IE + + I+ LI L IRKLV+G
Sbjct: 105 VFREKEREKVHMILDDYLRICQQRGVRAEKMFIEMESIENGIVQLISELGIRKLVMGAAA 164
Query: 232 SSLRVLRKSKSGRISGMADHILQTAPETCEIKVVCEG------KEVIDQMINDSPSPR 283
R + + S A + + AP C+I C+G + +D ++ SPR
Sbjct: 165 D--RHYSRRMTDLKSRKAIFVRREAPTLCQIWFTCKGYLIHTREATMDDTESEYASPR 220
>sp|Q683D5|PUB37_ARATH U-box domain-containing protein 37 OS=Arabidopsis thaliana GN=PUB37
PE=2 SV=1
Length = 400
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 36/170 (21%)
Query: 105 NGTQE---EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLP 161
+G+Q+ ++ IYVAVG + L W +++ I +H PL +
Sbjct: 5 SGSQQLLMDEKIYVAVGSDLGNKSTLVWAIQNTGGKEFCIVHVH---------QPLYR-- 53
Query: 162 RNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLN 221
+E K +++L K+L C Q +V + + I+ + V K I+ LI N
Sbjct: 54 --------------KEKEKTQKILDKYLQKCRQMQVCAEMIHIKMESVEKGIIQLISERN 99
Query: 222 IRKLVVGT---TKSSLRVLRKSKSGRISGMADHILQTAPETCEIKVVCEG 268
++KLV+G T+ S+R+ + +S A +I Q AP TC I C+G
Sbjct: 100 VKKLVMGAASDTRYSMRM-----ADLLSTKAIYIRQEAPATCCIWFTCKG 144
>sp|Q9FGD7|PUB50_ARATH Putative U-box domain-containing protein 50 OS=Arabidopsis thaliana
GN=PUB50 PE=3 SV=1
Length = 765
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 80/181 (44%), Gaps = 37/181 (20%)
Query: 93 ESSFFSFDVANGNGTQEEDIIYVAVGKS-QSSMDALSWTLRHAVNPSTLIFLIHVFPQVK 151
E+ +V +G++ E + Y+AVG Q + W L+ N I L+H+ +
Sbjct: 3 ETKTHELEVEAESGSRMEKV-YIAVGNDVQEGYKTIHWALKKWNNIPISIVLLHLCNISQ 61
Query: 152 -FVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVA 210
FV +P GKLP + V+ E+L+ E K +LL K++ C +
Sbjct: 62 DFVYTPFGKLPASSVSEEKLQVLRKYEDQKIDKLLSKYITFCGK---------------- 105
Query: 211 KAILDLIPVLNIRKLVVGTTKSSLRVLRKSKSGRISGMADHILQTAPETCEIKVVCEGKE 270
+ L++ ++ G +KS+ ISG + ++ Q PE CE ++C GK
Sbjct: 106 ------VCPLSVNFVLFGKSKSA-----------ISG-SFYVYQNKPEFCEFYIICGGKM 147
Query: 271 V 271
V
Sbjct: 148 V 148
>sp|Q9SW11|PUB35_ARATH U-box domain-containing protein 35 OS=Arabidopsis thaliana GN=PUB35
PE=1 SV=2
Length = 835
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 77/159 (48%), Gaps = 9/159 (5%)
Query: 113 IYVAVGKSQSSMDALSWTLRHAVNPSTLIF-LIHVFPQVKFVPSPLGK-LPRNQVNPEQL 170
+ VA+ S S ++W + + F L+H+ P + VP+P+G +P ++V + +
Sbjct: 22 VVVALSGSSKSKYVVTWAIEKFATEGNVGFKLLHIHPMITSVPTPMGNAIPISEVRDDVV 81
Query: 171 ETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT 230
+ + + ++L+ + + KV V+ ++IESD VA AI + + +I ++V+G +
Sbjct: 82 TAYRQEILWQSEEMLKPYTKLFVRRKVAVEVLVIESDNVAAAIAEEVTRDSIDRIVIGGS 141
Query: 231 KSSLRVLRKSKSGRISGMADHILQTAPETCEIKVVCEGK 269
S + IS + P C + VV +GK
Sbjct: 142 SRSFFSRKADICSVISAL-------MPNFCTVYVVSKGK 173
>sp|Q8GZ84|PUB36_ARATH U-box domain-containing protein 36 OS=Arabidopsis thaliana GN=PUB36
PE=2 SV=2
Length = 435
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 77/174 (44%), Gaps = 22/174 (12%)
Query: 99 FDVANGNGTQEEDIIYVAVG-KSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPL 157
D+ +++ IYVAV K S +L W ++++ I +H P P
Sbjct: 22 IDIPESMEINKKEKIYVAVTEKDLESKSSLVWAIQNSGGKEFCIVHVHQ-------PIP- 73
Query: 158 GKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLI 217
++ EQ +E K + +K+L C Q +V + + IE+D V K IL LI
Sbjct: 74 -----GEMFHEQKLRLYRKEKDKAHKNSEKYLQICRQMQVTAEIIYIETDSVEKGILQLI 128
Query: 218 PVLNIRKLVVGTTKS---SLRVLRKSKSGRISGMADHILQTAPETCEIKVVCEG 268
+ KLV+G S+R +R KS + A +I + AP TC I C G
Sbjct: 129 SQRGVTKLVMGAAADRHYSMR-MRDLKSKK----AIYIHREAPATCLIWFTCNG 177
>sp|P0C6E7|PUB55_ARATH Putative U-box domain-containing protein 55 OS=Arabidopsis thaliana
GN=PUB55 PE=3 SV=1
Length = 568
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 28/172 (16%)
Query: 101 VANGNGTQEEDIIYVAVGKS-QSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGK 159
+A GN D+++VAV + S L W LR+ + + ++HV+ Q K K
Sbjct: 5 MAMGN-----DVVHVAVKSDVRESRSTLLWALRNL--GAKKVCILHVY-QPKTASPAARK 56
Query: 160 LPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLI---ESDLVAKAILDL 216
L E+LE M + L + D C Q V D + I E + V + IL+L
Sbjct: 57 L-------EELEAIMYE-------TLHDYFDFCQQEGVNEDDIYISCIEMNDVKQGILEL 102
Query: 217 IPVLNIRKLVVGTTKSSLRVLRKSKSGRISGMADHILQTAPETCEIKVVCEG 268
I I+KLV+G +S + S A ++ Q AP +CE+ +C+G
Sbjct: 103 IHESKIKKLVMGA--ASDHHYSEKMFDLKSRKAKYVYQHAPSSCEVMFMCDG 152
>sp|Q9LQ92|PUB54_ARATH U-box domain-containing protein 54 OS=Arabidopsis thaliana GN=PUB54
PE=2 SV=1
Length = 308
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 71/164 (43%), Gaps = 15/164 (9%)
Query: 110 EDIIYVAVGKS-QSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPE 168
ED IYVAV + + S L W L++ IFL+HV S +++
Sbjct: 2 EDAIYVAVNQDVRESKKTLLWALKNL--QVKKIFLLHVHLPFSLTTSS------SRLEQS 53
Query: 169 QLETFMAQETGKRRQLLQKFLDTCSQSKVM---VDTVLIESDLVAKAILDLIPVLNIRKL 225
+++ E L K+ D C V VDT +I V + I++LI I L
Sbjct: 54 EIDAIQDSELNTSVNSLYKYRDICINKGVNEKDVDTSMISGHDVGEGIVELIYQNIITNL 113
Query: 226 VVGTTKSSLRVLRKSKSGRISGMADHILQTAPETCEIKVVCEGK 269
V+G S + R A+++ Q AP +C+I +C+GK
Sbjct: 114 VMGAAADPHYSRGMSITSR---KAEYVSQHAPHSCKIWFICKGK 154
>sp|Q8GXQ7|PUB56_ARATH U-box domain-containing protein 56 OS=Arabidopsis thaliana GN=PUB56
PE=2 SV=1
Length = 365
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 11/106 (10%)
Query: 169 QLETFMAQETGKRRQLLQKFLDTCSQSKVM---VDTVLIESDLVAKAILDLIPVLNIRKL 225
+++ E R L K+ D C V+ VD ++ V + I++LI NI+KL
Sbjct: 12 EIDAIQELEQTSRNDTLLKYHDICIDEGVIEQDVDMSCFSANSVGEWIVELIYQNNIKKL 71
Query: 226 VVGTTKSSLRVLRKSKSGRIS---GMADHILQTAPETCEIKVVCEG 268
++G T S G + AD+++Q AP C I +VC G
Sbjct: 72 IMGATADS-----HYSEGMVHITPTKADYVIQHAPHCCNIWLVCNG 112
>sp|Q94A51|PUB32_ARATH U-box domain-containing protein 32 OS=Arabidopsis thaliana GN=PUB32
PE=2 SV=1
Length = 805
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 77/179 (43%), Gaps = 13/179 (7%)
Query: 110 EDIIYVAVGKS-QSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPE 168
++ I+VAV + + S + W R+ I L++V + KL
Sbjct: 14 DETIFVAVAEDVERSKTTVLWAARNFSGKK--ICLLYVHRTARAASWTHKKLVGGSFKKH 71
Query: 169 QLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVG 228
++ E K +L+ +L S++++ D + I + + I++LI I+ LV+G
Sbjct: 72 DVKVIERVEKPKVDELMNSYLQLLSETEIQTDKLCIAGQNIEECIVELIARHKIKWLVMG 131
Query: 229 TTKSSLRVLRKSKSGRISGM----ADHILQTAPETCEIKVVCEGKEVIDQMINDSPSPR 283
K S +++ + A + + AP++C I +C+G + + ND + R
Sbjct: 132 AASD------KHYSWKMTDLKSKKAIFVCKKAPDSCHIWFLCKGYLIFTRASNDDSNNR 184
>sp|Q9FKG5|PUB51_ARATH U-box domain-containing protein 51 OS=Arabidopsis thaliana GN=PUB51
PE=2 SV=2
Length = 796
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 73/160 (45%), Gaps = 13/160 (8%)
Query: 112 IIYVAV-GKSQSSMDALSWTLRHAVNPSTLIF-LIHVFPQVKFVPSPLGKLPRNQVNPEQ 169
I+ VA+ G + + + W L+ + ++F L+HV P+ S K V +
Sbjct: 7 IVAVAIKGNNSKTKGVVRWALQEFASQEHVVFKLLHVQPRDSNSVSTTRKDLTTSVYKKD 66
Query: 170 LETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGT 229
++ K R++L D +V +D +++ESD +A AI + I +LV+G
Sbjct: 67 VDR-------KTREMLLPSRDMFVHREVQLDIMVLESDDIADAISKAVQDHGISELVIGA 119
Query: 230 TKSSLRVLRKSKSGRISGMADHILQTAPETCEIKVVCEGK 269
+ S + + +S S +AD P C + V+ +GK
Sbjct: 120 SSSIIFSWKLKRSNLSSRIAD----ATPRFCSVHVISKGK 155
>sp|Q8S8S7|PUB34_ARATH U-box domain-containing protein 34 OS=Arabidopsis thaliana GN=PUB34
PE=3 SV=1
Length = 801
Score = 39.7 bits (91), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 91/220 (41%), Gaps = 36/220 (16%)
Query: 100 DVANGNGTQ-EEDIIYVAVG---------KSQSSMDALSWTLRHAVNPSTLIFLIHVFPQ 149
+++ G G + EE ++VAV S A+ W + + + + +IHV P
Sbjct: 8 EMSGGGGPKAEEGQLFVAVAVKGLIGDKLGGAGSRRAVRWAVDNLLPKADKFVMIHVIPT 67
Query: 150 VKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLV 209
+ +P+P + G R L S ++ V V E + V
Sbjct: 68 ITSIPTP-------NILILMFTRMWVVTAGDR---LPVEEVEESVVEMYVRDVKKEYETV 117
Query: 210 AKAILDLIPVLNIRKLVVGTTKSSLRVLRKSKSGRISGMADHILQTAPETCEIKVVCEGK 269
+P L + K +T+S+ R R S+ + +G+ +L+ APETCE+ +VC+ +
Sbjct: 118 ------FVPFLKMCK----STRSTKRYFR-SRRTKGTGVPLTVLRYAPETCEVYIVCKDR 166
Query: 270 ---EVIDQMINDSPSPRNNDHNSLKASQEKNELPGSFSCM 306
+ +D +IN P + H + A + SF +
Sbjct: 167 ITTKSMDPLINREPC--TSPHAAATAHDFLRDWAASFHTL 204
>sp|Q9FKG6|PUB52_ARATH U-box domain-containing protein 52 OS=Arabidopsis thaliana GN=PUB52
PE=2 SV=1
Length = 845
Score = 38.9 bits (89), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 75/159 (47%), Gaps = 9/159 (5%)
Query: 113 IYVAVGKSQSSMDALSWTLRHAVNPSTLIF-LIHVFPQVKFVPSPLG-KLPRNQVNPEQL 170
+ VA+ + S + W L + F L++V P V ++P+P+G + +++ + +
Sbjct: 24 VAVAINGKKKSKYVVFWALEKFIPEGFTDFKLLYVRPPVSYIPTPMGIAVAVSELREDVV 83
Query: 171 ETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT 230
+ + ++L+ + + KV V+ +L++S A AI + I + KLV+G +
Sbjct: 84 SAYKQELDWSANEMLRPYKKMFERRKVQVEVLLLDSLEPAAAIAEEIAGTGVTKLVIGMS 143
Query: 231 KSSLRVLRKSKSGRISGMADHILQTAPETCEIKVVCEGK 269
LR S +I M+ I P C + V+ +GK
Sbjct: 144 ------LRGFFSRKID-MSSLIATAVPRFCTVYVISKGK 175
>sp|Q9LU47|PUB53_ARATH Putative U-box domain-containing protein 53 OS=Arabidopsis thaliana
GN=PUB53 PE=3 SV=1
Length = 819
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 70/177 (39%), Gaps = 32/177 (18%)
Query: 113 IYVAVGKSQSSMDALSWTLRHAVNPSTLIF-LIHVFPQVKFVPSPLGKLPRNQVN-PEQL 170
+ +A+ S S + + W L + + F LIH+ P++ +P+ G N V+ E+L
Sbjct: 34 VALAISGSIKSKNVIKWALNKFGSDKNVTFKLIHIHPKITTLPTASG----NIVSISEEL 89
Query: 171 ETFMAQETGKRRQ-----LLQKFLDTCSQSKVMVDTVLIESDL--------------VAK 211
E A K Q LL+ F C + K+ +D ES L VA
Sbjct: 90 EEVAAAYRQKVMQETKETLLKPFKKMCERKKLKIDETRFESSLTKVAVELQVLESNSVAV 149
Query: 212 AILDLIPVLNIRKLVVGTTKSSLRVLRKSKSGRISGMADHILQTAPETCEIKVVCEG 268
AI + I L++G + ++ S R + I + C + VV G
Sbjct: 150 AITKEVNQHLISNLIIGRSS-------QAASSRNYDITASISASVSNLCTVYVVSNG 199
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.126 0.343
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,442,421
Number of Sequences: 539616
Number of extensions: 4382876
Number of successful extensions: 26373
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 120
Number of HSP's that attempted gapping in prelim test: 24131
Number of HSP's gapped (non-prelim): 1733
length of query: 310
length of database: 191,569,459
effective HSP length: 117
effective length of query: 193
effective length of database: 128,434,387
effective search space: 24787836691
effective search space used: 24787836691
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)