Query 021587
Match_columns 310
No_of_seqs 262 out of 1618
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 04:09:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021587.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021587hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01989 STK_N The N-terminal d 100.0 1.5E-27 3.4E-32 200.1 17.1 145 112-268 1-146 (146)
2 PRK15456 universal stress prot 99.9 7.5E-25 1.6E-29 184.0 16.0 139 110-266 2-142 (142)
3 PRK15005 universal stress prot 99.9 5.8E-24 1.3E-28 177.7 15.5 141 110-266 2-144 (144)
4 PRK09982 universal stress prot 99.9 5E-23 1.1E-27 174.0 13.3 138 110-268 3-140 (142)
5 PRK15118 universal stress glob 99.9 1.3E-22 2.9E-27 170.2 14.0 138 109-268 2-140 (144)
6 cd01988 Na_H_Antiporter_C The 99.9 5.1E-21 1.1E-25 156.3 15.9 132 112-266 1-132 (132)
7 PF00582 Usp: Universal stress 99.9 3.8E-21 8.2E-26 155.1 14.1 139 110-266 2-140 (140)
8 PRK10116 universal stress prot 99.9 1.6E-20 3.4E-25 156.8 15.9 138 109-268 2-140 (142)
9 cd01987 USP_OKCHK USP domain i 99.9 1.1E-20 2.3E-25 154.4 14.3 123 112-266 1-124 (124)
10 PRK11175 universal stress prot 99.8 3.6E-20 7.8E-25 173.3 15.7 145 110-268 3-147 (305)
11 COG0589 UspA Universal stress 99.8 1.5E-17 3.2E-22 137.9 17.0 148 109-268 4-153 (154)
12 PRK11175 universal stress prot 99.8 3.4E-18 7.3E-23 160.0 14.4 143 109-269 151-302 (305)
13 cd00293 USP_Like Usp: Universa 99.8 2.4E-17 5.2E-22 131.8 15.5 130 112-265 1-130 (130)
14 PRK12652 putative monovalent c 99.5 9.9E-14 2.1E-18 135.1 14.1 105 109-231 4-123 (357)
15 PRK10490 sensor protein KdpD; 99.2 1.3E-10 2.9E-15 125.1 15.7 128 109-269 249-376 (895)
16 COG2205 KdpD Osmosensitive K+ 99.1 2.8E-09 6.2E-14 111.6 14.8 132 109-271 247-378 (890)
17 cd01984 AANH_like Adenine nucl 98.3 2.4E-06 5.1E-11 65.8 7.3 84 113-264 1-85 (86)
18 TIGR02432 lysidine_TilS_N tRNA 96.8 0.016 3.5E-07 50.7 11.2 94 112-232 1-110 (189)
19 PLN03159 cation/H(+) antiporte 96.6 0.019 4.2E-07 62.2 12.1 150 109-267 457-615 (832)
20 cd01992 PP-ATPase N-terminal d 96.0 0.085 1.9E-06 45.8 10.6 95 112-233 1-108 (185)
21 PF01171 ATP_bind_3: PP-loop f 96.0 0.088 1.9E-06 46.2 10.6 94 112-232 1-107 (182)
22 PLN03159 cation/H(+) antiporte 94.8 0.29 6.3E-06 53.2 11.8 159 110-272 630-799 (832)
23 cd01993 Alpha_ANH_like_II This 94.1 0.5 1.1E-05 40.7 9.8 37 112-148 1-39 (185)
24 COG0037 MesJ tRNA(Ile)-lysidin 91.9 1.3 2.8E-05 41.4 9.7 37 111-149 22-58 (298)
25 PRK12342 hypothetical protein; 90.0 3.3 7.2E-05 39.0 10.4 86 118-232 32-120 (254)
26 PRK10696 tRNA 2-thiocytidine b 89.8 5.1 0.00011 37.3 11.5 93 110-232 29-142 (258)
27 TIGR00268 conserved hypothetic 89.7 2.3 4.9E-05 39.5 9.1 35 110-148 12-46 (252)
28 PRK03359 putative electron tra 87.5 4.4 9.4E-05 38.2 9.4 86 119-232 34-123 (256)
29 COG2086 FixA Electron transfer 87.3 1.4 3.1E-05 41.6 6.0 83 116-232 32-122 (260)
30 cd01990 Alpha_ANH_like_I This 85.7 5.2 0.00011 35.3 8.6 33 113-148 1-33 (202)
31 PRK13820 argininosuccinate syn 83.9 8.8 0.00019 38.4 10.0 36 110-148 2-38 (394)
32 cd01712 ThiI ThiI is required 82.9 21 0.00045 30.9 11.0 34 112-149 1-34 (177)
33 TIGR00342 thiazole biosynthesi 80.9 23 0.00051 34.8 11.7 36 109-148 171-206 (371)
34 PLN00200 argininosuccinate syn 80.3 24 0.00052 35.5 11.6 106 110-233 5-125 (404)
35 PRK10660 tilS tRNA(Ile)-lysidi 80.0 12 0.00026 37.8 9.5 39 110-148 15-54 (436)
36 PRK05253 sulfate adenylyltrans 79.6 12 0.00026 36.0 9.0 38 111-148 28-65 (301)
37 PF01012 ETF: Electron transfe 79.4 19 0.00041 30.7 9.4 82 120-234 14-103 (164)
38 KOG1467 Translation initiation 77.9 14 0.00031 37.9 9.2 115 111-274 360-476 (556)
39 PRK05370 argininosuccinate syn 77.5 34 0.00073 34.9 11.7 106 110-234 11-135 (447)
40 cd01995 ExsB ExsB is a transcr 77.1 15 0.00032 31.4 8.0 33 112-148 1-33 (169)
41 cd01986 Alpha_ANH_like Adenine 75.6 22 0.00047 27.9 8.1 33 113-149 1-33 (103)
42 cd01713 PAPS_reductase This do 75.2 18 0.00038 30.0 7.9 36 112-148 1-36 (173)
43 TIGR00032 argG argininosuccina 75.1 29 0.00064 34.7 10.6 33 112-148 1-33 (394)
44 PF00875 DNA_photolyase: DNA p 74.7 15 0.00033 31.3 7.5 113 133-274 19-132 (165)
45 TIGR00591 phr2 photolyase PhrI 73.8 28 0.00061 35.0 10.2 91 118-230 32-122 (454)
46 PRK14665 mnmA tRNA-specific 2- 71.5 31 0.00067 34.1 9.7 34 110-147 5-38 (360)
47 cd01985 ETF The electron trans 70.7 35 0.00075 29.6 8.9 25 210-234 80-104 (181)
48 cd01996 Alpha_ANH_like_III Thi 70.4 38 0.00082 28.3 8.8 33 112-147 3-35 (154)
49 COG1606 ATP-utilizing enzymes 69.3 41 0.00089 32.0 9.4 89 111-232 18-124 (269)
50 COG0137 ArgG Argininosuccinate 69.1 89 0.0019 31.4 12.1 107 110-234 4-125 (403)
51 PRK00509 argininosuccinate syn 66.0 51 0.0011 33.2 10.0 35 111-148 3-37 (399)
52 TIGR03556 photolyase_8HDF deox 65.5 44 0.00095 34.0 9.6 84 124-230 16-99 (471)
53 cd01994 Alpha_ANH_like_IV This 64.4 94 0.002 27.7 10.5 34 112-149 1-34 (194)
54 PRK00919 GMP synthase subunit 63.3 72 0.0016 30.8 10.2 35 111-148 22-56 (307)
55 PRK08349 hypothetical protein; 61.4 60 0.0013 28.7 8.7 34 111-148 1-34 (198)
56 TIGR00884 guaA_Cterm GMP synth 60.7 68 0.0015 31.0 9.5 35 111-148 17-51 (311)
57 TIGR02765 crypto_DASH cryptoch 60.1 49 0.0011 32.9 8.7 48 181-231 59-106 (429)
58 PF13167 GTP-bdg_N: GTP-bindin 59.8 34 0.00074 27.5 6.1 50 181-230 6-66 (95)
59 TIGR01162 purE phosphoribosyla 59.6 51 0.0011 28.9 7.7 68 186-268 15-85 (156)
60 PRK00143 mnmA tRNA-specific 2- 59.5 84 0.0018 30.7 10.0 34 111-148 1-34 (346)
61 PF02844 GARS_N: Phosphoribosy 58.6 6.9 0.00015 31.8 1.9 21 210-230 51-71 (100)
62 PRK09722 allulose-6-phosphate 58.3 1.2E+02 0.0026 28.1 10.3 42 187-230 158-199 (229)
63 PRK14057 epimerase; Provisiona 57.5 1.4E+02 0.003 28.2 10.7 40 189-230 184-223 (254)
64 cd01714 ETF_beta The electron 57.4 1.1E+02 0.0024 27.3 9.8 32 115-146 29-60 (202)
65 PRK04527 argininosuccinate syn 57.3 97 0.0021 31.2 10.2 34 111-148 3-36 (400)
66 PRK08745 ribulose-phosphate 3- 56.8 75 0.0016 29.2 8.7 39 190-230 163-201 (223)
67 PRK13982 bifunctional SbtC-lik 56.3 67 0.0015 33.1 9.0 36 109-145 69-104 (475)
68 cd01997 GMP_synthase_C The C-t 56.3 74 0.0016 30.5 8.9 34 112-148 1-34 (295)
69 PRK08091 ribulose-phosphate 3- 55.6 1.3E+02 0.0027 28.0 9.9 39 190-230 171-209 (228)
70 PF02887 PK_C: Pyruvate kinase 55.4 14 0.0003 30.0 3.3 52 209-275 4-55 (117)
71 COG0041 PurE Phosphoribosylcar 53.6 66 0.0014 28.4 7.2 68 186-268 19-89 (162)
72 TIGR02039 CysD sulfate adenyly 53.5 1E+02 0.0022 29.7 9.3 38 111-148 20-57 (294)
73 COG0301 ThiI Thiamine biosynth 53.5 85 0.0018 31.5 9.0 37 109-149 174-210 (383)
74 PF00731 AIRC: AIR carboxylase 53.3 49 0.0011 28.8 6.5 68 186-268 17-87 (150)
75 TIGR00289 conserved hypothetic 49.3 1.8E+02 0.004 26.8 10.0 92 112-231 2-95 (222)
76 TIGR00273 iron-sulfur cluster- 48.3 47 0.001 33.7 6.4 59 171-230 39-97 (432)
77 PRK01565 thiamine biosynthesis 48.2 2.6E+02 0.0056 27.8 11.6 36 109-148 175-210 (394)
78 TIGR00420 trmU tRNA (5-methyla 47.9 2.4E+02 0.0052 27.7 11.1 33 111-147 1-33 (352)
79 PF02568 ThiI: Thiamine biosyn 47.7 1.1E+02 0.0023 27.8 8.0 36 110-149 3-38 (197)
80 PRK14664 tRNA-specific 2-thiou 47.7 2E+02 0.0044 28.4 10.6 34 110-147 5-38 (362)
81 COG0036 Rpe Pentose-5-phosphat 47.6 1E+02 0.0022 28.6 7.9 26 204-230 174-199 (220)
82 cd02067 B12-binding B12 bindin 47.4 95 0.0021 24.8 7.1 38 191-230 22-59 (119)
83 cd01998 tRNA_Me_trans tRNA met 47.3 1.9E+02 0.0042 28.2 10.4 33 112-148 1-33 (349)
84 PRK14561 hypothetical protein; 46.0 1.8E+02 0.0038 25.9 9.2 32 111-147 1-32 (194)
85 KOG1650 Predicted K+/H+-antipo 45.7 85 0.0018 34.2 8.2 40 111-150 615-654 (769)
86 PF02601 Exonuc_VII_L: Exonucl 45.5 46 0.001 31.7 5.7 33 202-234 49-88 (319)
87 cd03364 TOPRIM_DnaG_primases T 45.3 58 0.0012 24.3 5.1 34 111-144 44-77 (79)
88 PRK00074 guaA GMP synthase; Re 44.9 1.1E+02 0.0024 31.5 8.7 36 110-148 215-250 (511)
89 PRK01269 tRNA s(4)U8 sulfurtra 44.8 2.5E+02 0.0054 28.7 11.1 36 109-148 176-211 (482)
90 TIGR00364 exsB protein. This p 44.6 1.5E+02 0.0032 26.1 8.4 31 113-147 1-31 (201)
91 COG1597 LCB5 Sphingosine kinas 44.3 50 0.0011 31.6 5.6 86 180-279 17-104 (301)
92 PRK08576 hypothetical protein; 43.3 1.4E+02 0.0031 30.4 8.9 33 111-147 235-267 (438)
93 PF02310 B12-binding: B12 bind 43.1 1E+02 0.0022 24.3 6.6 38 191-230 23-60 (121)
94 COG0552 FtsY Signal recognitio 41.6 28 0.00061 34.2 3.5 40 192-232 190-232 (340)
95 PF02441 Flavoprotein: Flavopr 40.8 46 0.001 27.4 4.3 33 111-144 1-33 (129)
96 PRK12563 sulfate adenylyltrans 38.3 1.7E+02 0.0037 28.5 8.3 37 111-147 38-74 (312)
97 PF03746 LamB_YcsF: LamB/YcsF 38.3 1.6E+02 0.0036 27.6 7.9 58 175-232 80-146 (242)
98 PRK06027 purU formyltetrahydro 38.1 2.1E+02 0.0046 27.2 8.8 87 108-232 87-176 (286)
99 PF13662 Toprim_4: Toprim doma 37.8 54 0.0012 24.6 3.9 34 110-143 46-79 (81)
100 TIGR03573 WbuX N-acetyl sugar 37.5 1.9E+02 0.0042 28.1 8.7 24 209-232 148-171 (343)
101 TIGR00853 pts-lac PTS system, 37.3 68 0.0015 25.4 4.6 66 185-269 20-85 (95)
102 PRK10674 deoxyribodipyrimidine 37.1 2.7E+02 0.0059 28.3 10.0 86 124-230 17-105 (472)
103 PRK13398 3-deoxy-7-phosphohept 36.9 3E+02 0.0064 26.0 9.5 93 112-232 27-121 (266)
104 PRK06029 3-octaprenyl-4-hydrox 35.3 68 0.0015 28.7 4.7 34 111-144 2-35 (185)
105 TIGR00930 2a30 K-Cl cotranspor 35.2 4.6E+02 0.0099 29.5 12.0 95 112-230 577-676 (953)
106 PRK13055 putative lipid kinase 34.8 2.6E+02 0.0056 26.9 9.0 73 184-269 21-95 (334)
107 PF01008 IF-2B: Initiation fac 34.7 52 0.0011 30.7 4.1 47 221-274 176-225 (282)
108 PRK08335 translation initiatio 34.6 3.9E+02 0.0084 25.5 9.9 45 222-273 178-225 (275)
109 PRK08005 epimerase; Validated 34.3 2.6E+02 0.0057 25.5 8.5 28 202-230 166-193 (210)
110 TIGR02113 coaC_strep phosphopa 33.7 71 0.0015 28.3 4.5 33 111-144 1-33 (177)
111 cd01999 Argininosuccinate_Synt 33.3 2E+02 0.0044 28.7 8.2 33 113-148 1-33 (385)
112 PRK11106 queuosine biosynthesi 33.0 3.8E+02 0.0082 24.8 9.4 34 111-148 2-35 (231)
113 TIGR02766 crypt_chrom_pln cryp 32.0 2.8E+02 0.0061 28.0 9.1 48 182-231 50-97 (475)
114 PF04007 DUF354: Protein of un 32.0 67 0.0015 31.4 4.4 47 184-234 15-61 (335)
115 PRK09590 celB cellobiose phosp 31.9 1.2E+02 0.0027 24.5 5.3 42 186-231 19-60 (104)
116 PRK00286 xseA exodeoxyribonucl 31.8 1E+02 0.0022 30.8 5.9 55 202-264 170-229 (438)
117 PF02878 PGM_PMM_I: Phosphoglu 31.8 92 0.002 25.8 4.7 39 110-148 40-78 (137)
118 PRK13010 purU formyltetrahydro 31.6 3E+02 0.0064 26.4 8.7 86 109-232 92-180 (289)
119 PRK07313 phosphopantothenoylcy 31.3 96 0.0021 27.5 5.0 33 111-144 2-34 (182)
120 PRK13054 lipid kinase; Reviewe 31.3 2.3E+02 0.0049 26.7 7.8 67 191-269 26-94 (300)
121 TIGR02852 spore_dpaB dipicolin 30.7 91 0.002 28.0 4.8 34 111-144 1-34 (187)
122 PF13362 Toprim_3: Toprim doma 30.5 1.2E+02 0.0025 23.4 4.8 36 109-144 40-77 (96)
123 TIGR02855 spore_yabG sporulati 30.4 1.1E+02 0.0025 29.3 5.5 44 187-231 119-163 (283)
124 PRK08384 thiamine biosynthesis 30.3 2.9E+02 0.0064 27.5 8.7 35 109-147 179-213 (381)
125 COG0299 PurN Folate-dependent 30.3 4.3E+02 0.0094 24.2 9.7 125 112-272 2-146 (200)
126 cd05565 PTS_IIB_lactose PTS_II 29.9 2E+02 0.0043 23.1 6.2 41 187-233 19-59 (99)
127 PF05582 Peptidase_U57: YabG p 29.8 1.1E+02 0.0024 29.5 5.3 46 185-230 118-163 (287)
128 PLN02285 methionyl-tRNA formyl 29.5 3.8E+02 0.0082 26.1 9.2 22 211-232 83-104 (334)
129 cd01029 TOPRIM_primases TOPRIM 28.9 1.5E+02 0.0033 21.6 5.1 32 111-142 44-75 (79)
130 TIGR00147 lipid kinase, YegS/R 27.9 3.6E+02 0.0077 25.0 8.5 72 185-269 21-93 (293)
131 PRK00109 Holliday junction res 27.5 79 0.0017 26.8 3.6 50 210-269 43-99 (138)
132 TIGR00646 MG010 DNA primase-re 26.9 1.3E+02 0.0028 27.9 5.1 35 110-144 154-188 (218)
133 PRK11914 diacylglycerol kinase 26.8 1.1E+02 0.0025 28.7 5.0 66 190-269 33-98 (306)
134 PRK12857 fructose-1,6-bisphosp 26.7 98 0.0021 29.6 4.5 71 193-269 14-84 (284)
135 PF06925 MGDG_synth: Monogalac 26.6 1E+02 0.0022 26.4 4.2 97 122-232 3-99 (169)
136 PRK05406 LamB/YcsF family prot 26.5 1.3E+02 0.0029 28.3 5.2 57 176-232 83-148 (246)
137 PHA02031 putative DnaG-like pr 26.5 97 0.0021 29.5 4.3 37 110-146 206-242 (266)
138 PRK00861 putative lipid kinase 26.2 2.6E+02 0.0055 26.2 7.2 59 197-269 33-91 (300)
139 PRK12737 gatY tagatose-bisphos 26.1 1.1E+02 0.0024 29.3 4.7 72 192-269 13-84 (284)
140 COG1184 GCD2 Translation initi 26.1 3.1E+02 0.0067 26.7 7.7 42 221-269 187-231 (301)
141 COG2102 Predicted ATPases of P 26.1 5.4E+02 0.012 23.9 9.5 92 112-231 2-96 (223)
142 cd08550 GlyDH-like Glycerol_de 26.0 1.6E+02 0.0034 28.5 5.9 44 186-229 39-86 (349)
143 cd02071 MM_CoA_mut_B12_BD meth 25.9 1.3E+02 0.0029 24.4 4.7 44 185-230 16-59 (122)
144 cd06361 PBP1_GPC6A_like Ligand 25.9 6.3E+02 0.014 24.7 10.2 34 199-232 235-269 (403)
145 PF14639 YqgF: Holliday-juncti 25.8 86 0.0019 27.1 3.6 25 210-234 52-76 (150)
146 PRK15411 rcsA colanic acid cap 25.7 4.7E+02 0.01 23.1 8.7 51 205-268 32-86 (207)
147 TIGR00486 YbgI_SA1388 dinuclea 25.5 1.1E+02 0.0023 28.4 4.4 34 106-146 32-65 (249)
148 PRK13059 putative lipid kinase 25.2 2.6E+02 0.0056 26.3 7.1 69 187-269 23-92 (295)
149 PRK12569 hypothetical protein; 25.1 1.4E+02 0.003 28.1 5.1 57 176-232 86-151 (245)
150 TIGR03183 DNA_S_dndC putative 25.1 7.5E+02 0.016 25.3 11.0 38 111-148 14-53 (447)
151 PRK06806 fructose-bisphosphate 24.7 1.3E+02 0.0028 28.7 4.9 72 192-269 13-84 (281)
152 TIGR00237 xseA exodeoxyribonuc 24.6 1.7E+02 0.0037 29.5 6.0 33 202-234 164-200 (432)
153 TIGR00045 glycerate kinase. Th 24.3 74 0.0016 31.8 3.3 43 220-269 282-325 (375)
154 TIGR00524 eIF-2B_rel eIF-2B al 24.1 1.9E+02 0.004 27.9 5.9 50 218-274 194-246 (303)
155 KOG2130 Phosphatidylserine-spe 24.0 37 0.0008 33.4 1.0 12 49-60 364-375 (407)
156 COG1139 Uncharacterized conser 23.5 2.1E+02 0.0047 29.3 6.3 90 174-268 56-154 (459)
157 PRK13337 putative lipid kinase 23.5 4.4E+02 0.0096 24.7 8.3 70 187-269 23-93 (304)
158 PLN02828 formyltetrahydrofolat 23.5 6.4E+02 0.014 23.9 10.2 45 98-146 61-105 (268)
159 smart00493 TOPRIM topoisomeras 23.4 1.2E+02 0.0026 21.9 3.6 26 111-136 48-73 (76)
160 TIGR01858 tag_bisphos_ald clas 23.4 1.3E+02 0.0027 28.9 4.5 71 193-269 12-82 (282)
161 PRK06850 hypothetical protein; 23.3 6.6E+02 0.014 26.2 10.0 24 111-134 35-58 (507)
162 PRK06801 hypothetical protein; 23.3 1.3E+02 0.0028 28.8 4.6 72 192-269 13-84 (286)
163 TIGR00655 PurU formyltetrahydr 22.9 5.2E+02 0.011 24.6 8.6 86 109-232 83-171 (280)
164 TIGR00177 molyb_syn molybdenum 22.7 1.6E+02 0.0034 24.8 4.6 36 192-228 36-73 (144)
165 TIGR00511 ribulose_e2b2 ribose 22.7 1.8E+02 0.0038 27.9 5.4 47 221-274 183-232 (301)
166 PRK05920 aromatic acid decarbo 22.6 1.8E+02 0.0039 26.5 5.2 35 110-145 3-37 (204)
167 PRK08305 spoVFB dipicolinate s 22.6 1.7E+02 0.0037 26.5 5.0 34 110-144 5-39 (196)
168 cd05564 PTS_IIB_chitobiose_lic 22.5 3.4E+02 0.0073 21.2 6.2 66 185-269 16-81 (96)
169 PRK08883 ribulose-phosphate 3- 22.4 1.6E+02 0.0035 26.9 4.9 44 185-230 154-197 (220)
170 PLN02948 phosphoribosylaminoim 22.3 3E+02 0.0066 28.9 7.5 69 185-268 426-497 (577)
171 COG0151 PurD Phosphoribosylami 22.2 64 0.0014 32.8 2.3 22 210-231 52-73 (428)
172 PRK12738 kbaY tagatose-bisphos 22.1 1.4E+02 0.0031 28.6 4.7 77 182-269 7-84 (286)
173 PF06508 QueC: Queuosine biosy 21.7 5.5E+02 0.012 23.1 8.2 32 112-147 1-32 (209)
174 TIGR03702 lip_kinase_YegS lipi 21.6 3E+02 0.0065 25.8 6.7 66 192-269 23-90 (293)
175 cd06375 PBP1_mGluR_groupII Lig 21.5 7.4E+02 0.016 24.7 9.9 35 199-233 233-268 (458)
176 PRK08535 translation initiatio 21.4 7.3E+02 0.016 23.8 10.7 67 193-274 168-237 (310)
177 PRK13011 formyltetrahydrofolat 21.1 5.7E+02 0.012 24.3 8.5 86 109-232 88-176 (286)
178 cd07187 YvcK_like family of mo 20.9 2.3E+02 0.0051 27.4 5.9 64 197-268 151-216 (308)
179 TIGR01501 MthylAspMutase methy 20.7 1.3E+02 0.0028 25.6 3.6 46 180-230 16-61 (134)
180 cd02070 corrinoid_protein_B12- 20.3 4.2E+02 0.0092 23.4 7.1 38 191-230 105-142 (201)
181 PF07355 GRDB: Glycine/sarcosi 20.2 3.3E+02 0.0072 27.0 6.8 65 196-268 47-120 (349)
182 PF00834 Ribul_P_3_epim: Ribul 20.1 43 0.00093 30.3 0.6 43 185-229 153-195 (201)
183 TIGR00421 ubiX_pad polyprenyl 20.1 1.4E+02 0.003 26.4 3.9 32 112-144 1-32 (181)
No 1
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=99.95 E-value=1.5e-27 Score=200.09 Aligned_cols=145 Identities=31% Similarity=0.516 Sum_probs=121.0
Q ss_pred EEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEecCCCcCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 021587 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDT 191 (310)
Q Consensus 112 kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~~~~~ip~~~g~ip~~~~~~e~~e~~~~~~~e~a~elL~~~~~~ 191 (310)
+||||+|+|+.|++||+||+++|...+++|++|||+++........+ .......+.++.++.++++|+++.+.
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~ 73 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSG-------KLEVASAYKQEEDKEAKELLLPYRCF 73 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCCcc-------chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999989999999999976432111111 01223445566677888999999999
Q ss_pred hhcCCCcEEEEEEEcCChHHHHHHHhccCCCCEEEECCCCCCchhhhhcccCCCC-cHHHHHHhhCCCCceEEEEcCC
Q 021587 192 CSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRVLRKSKSGRIS-GMADHILQTAPETCEIKVVCEG 268 (310)
Q Consensus 192 ~~~~gV~ve~~vveG~~~aeaIve~A~e~~aDLIVMGSrG~g~~~l~r~~s~llG-SVA~~Vl~~Ap~~CpVlVV~~~ 268 (310)
|...++.++..++.|++|+++|+++|+++++||||||+||++. +.++ ++| ||+.+|+++++++|||+||++|
T Consensus 74 ~~~~~~~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g~~~--l~~~---~~gssva~~Vi~~a~~~c~Vlvv~~~ 146 (146)
T cd01989 74 CSRKGVQCEDVVLEDDDVAKAIVEYVADHGITKLVMGASSDNH--FSMK---FKKSDVASSVLKEAPDFCTVYVVSKG 146 (146)
T ss_pred HhhcCCeEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccCCCc--eeec---ccCCchhHHHHhcCCCCceEEEEeCc
Confidence 8888999999998887789999999999999999999999987 6776 455 7999999999999999999986
No 2
>PRK15456 universal stress protein UspG; Provisional
Probab=99.93 E-value=7.5e-25 Score=183.99 Aligned_cols=139 Identities=17% Similarity=0.217 Sum_probs=110.2
Q ss_pred CCEEEEeecCC--HHHHHHHHHHHHHhcCCCCEEEEEEEecCCCcCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 021587 110 EDIIYVAVGKS--QSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQK 187 (310)
Q Consensus 110 ~~kILVAVDgS--e~S~~AL~wAl~lA~~~ga~L~LVHVi~~~~~ip~~~g~ip~~~~~~e~~e~~~~~~~e~a~elL~~ 187 (310)
|++||||+||| +.+++|++||+.+|.. .++|++|||+++..... .... ..+.+.+.+..++.+++.|++
T Consensus 2 ~~~ILv~vD~S~~~~s~~al~~A~~la~~-~~~l~llhv~~~~~~~~--~~~~------~~~~~~~~~~~~~~~~~~l~~ 72 (142)
T PRK15456 2 YKTIIMPVDVFEMELSDKAVRHAEFLAQD-DGVIHLLHVLPGSASLS--LHRF------AADVRRFEEHLQHEAEERLQT 72 (142)
T ss_pred CccEEEeccCCchhHHHHHHHHHHHHHhc-CCeEEEEEEecCccccc--cccc------ccchhhHHHHHHHHHHHHHHH
Confidence 58999999999 4899999999999876 46999999997643211 0000 011234455666777788888
Q ss_pred HHHHhhcCCCcEEEEEEEcCChHHHHHHHhccCCCCEEEECCCCCCchhhhhcccCCCCcHHHHHHhhCCCCceEEEEc
Q 021587 188 FLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRVLRKSKSGRISGMADHILQTAPETCEIKVVC 266 (310)
Q Consensus 188 ~~~~~~~~gV~ve~~vveG~~~aeaIve~A~e~~aDLIVMGSrG~g~~~l~r~~s~llGSVA~~Vl~~Ap~~CpVlVV~ 266 (310)
+.+.+...+++++.++..|. ++++|+++|+++++||||||+||++. .++ ++|||+.+|+++++ ||||||+
T Consensus 73 ~~~~~~~~~~~v~~~v~~G~-~~~~I~~~a~~~~~DLIVmG~~g~~~---~~~---llGS~a~~v~~~a~--~pVLvV~ 142 (142)
T PRK15456 73 MVSHFTIDPSRIKQHVRFGS-VRDEVNELAEELGADVVVIGSRNPSI---STH---LLGSNASSVIRHAN--LPVLVVR 142 (142)
T ss_pred HHHHhCCCCcceEEEEcCCC-hHHHHHHHHhhcCCCEEEEcCCCCCc---cce---ecCccHHHHHHcCC--CCEEEeC
Confidence 88776656788888888875 59999999999999999999999865 555 68999999999999 9999986
No 3
>PRK15005 universal stress protein F; Provisional
Probab=99.92 E-value=5.8e-24 Score=177.71 Aligned_cols=141 Identities=17% Similarity=0.257 Sum_probs=107.7
Q ss_pred CCEEEEeecCCHH--HHHHHHHHHHHhcCCCCEEEEEEEecCCCcCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 021587 110 EDIIYVAVGKSQS--SMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQK 187 (310)
Q Consensus 110 ~~kILVAVDgSe~--S~~AL~wAl~lA~~~ga~L~LVHVi~~~~~ip~~~g~ip~~~~~~e~~e~~~~~~~e~a~elL~~ 187 (310)
+++||||+|||+. +++|++||+++|+..+++|++|||+++...... .+... .... ...++.++.+++.|++
T Consensus 2 ~~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~~~-~~~~~----~~~~--~~~~~~~~~~~~~l~~ 74 (144)
T PRK15005 2 NRTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYAS-LGLAY----SAEL--PAMDDLKAEAKSQLEE 74 (144)
T ss_pred CccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccCccccc-ccccc----cccc--hHHHHHHHHHHHHHHH
Confidence 5799999999998 589999999999999999999999986432110 11000 0000 0122344556667777
Q ss_pred HHHHhhcCCCcEEEEEEEcCChHHHHHHHhccCCCCEEEECCCCCCchhhhhcccCCCCcHHHHHHhhCCCCceEEEEc
Q 021587 188 FLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRVLRKSKSGRISGMADHILQTAPETCEIKVVC 266 (310)
Q Consensus 188 ~~~~~~~~gV~ve~~vveG~~~aeaIve~A~e~~aDLIVMGSrG~g~~~l~r~~s~llGSVA~~Vl~~Ap~~CpVlVV~ 266 (310)
+.+.+...+++++.++..|. |++.|+++|+++++||||||+|+.+. .++ ++||++.+|+++++ ||||||+
T Consensus 75 ~~~~~~~~~~~~~~~v~~G~-p~~~I~~~a~~~~~DLIV~Gs~~~~~---~~~---llGS~a~~vl~~a~--cpVlvVr 144 (144)
T PRK15005 75 IIKKFKLPTDRVHVHVEEGS-PKDRILELAKKIPADMIIIASHRPDI---TTY---LLGSNAAAVVRHAE--CSVLVVR 144 (144)
T ss_pred HHHHhCCCCCceEEEEeCCC-HHHHHHHHHHHcCCCEEEEeCCCCCc---hhe---eecchHHHHHHhCC--CCEEEeC
Confidence 77766666778888888775 59999999999999999999996544 666 68999999999999 9999986
No 4
>PRK09982 universal stress protein UspD; Provisional
Probab=99.90 E-value=5e-23 Score=173.96 Aligned_cols=138 Identities=14% Similarity=0.113 Sum_probs=105.8
Q ss_pred CCEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEecCCCcCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 021587 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFL 189 (310)
Q Consensus 110 ~~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~~~~~ip~~~g~ip~~~~~~e~~e~~~~~~~e~a~elL~~~~ 189 (310)
|++||||+|+|+.|++|+++|+++|++.+++|++|||+++...... ..+.+ ..+...+..++.+++.|+++.
T Consensus 3 ~k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~-~~~~~-------~~~~~~~~~~~~~~~~l~~~~ 74 (142)
T PRK09982 3 YKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSELYP-GIYFP-------ATEDILQLLKNKSDNKLYKLT 74 (142)
T ss_pred ceEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEccCcchhch-hhhcc-------chHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999976421100 00000 112334555666777777777
Q ss_pred HHhhcCCCcEEEEEEEcCChHHHHHHHhccCCCCEEEECCCCCCchhhhhcccCCCCcHHHHHHhhCCCCceEEEEcCC
Q 021587 190 DTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRVLRKSKSGRISGMADHILQTAPETCEIKVVCEG 268 (310)
Q Consensus 190 ~~~~~~gV~ve~~vveG~~~aeaIve~A~e~~aDLIVMGSrG~g~~~l~r~~s~llGSVA~~Vl~~Ap~~CpVlVV~~~ 268 (310)
+.+.. ..++..+..|. |++.|+++|+++++||||||+| ++. ++++ + | |+.+|+++++ ||||||+..
T Consensus 75 ~~~~~--~~~~~~v~~G~-p~~~I~~~A~~~~aDLIVmG~~-~~~--~~~~---~-~-va~~V~~~s~--~pVLvv~~~ 140 (142)
T PRK09982 75 KNIQW--PKTKLRIERGE-MPETLLEIMQKEQCDLLVCGHH-HSF--INRL---M-P-AYRGMINKMS--ADLLIVPFI 140 (142)
T ss_pred HhcCC--CcceEEEEecC-HHHHHHHHHHHcCCCEEEEeCC-hhH--HHHH---H-H-HHHHHHhcCC--CCEEEecCC
Confidence 66542 35666777775 6999999999999999999987 655 5777 4 5 9999999999 999999854
No 5
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=99.89 E-value=1.3e-22 Score=170.22 Aligned_cols=138 Identities=17% Similarity=0.180 Sum_probs=98.6
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEecCCCcCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 021587 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKF 188 (310)
Q Consensus 109 ~~~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~~~~~ip~~~g~ip~~~~~~e~~e~~~~~~~e~a~elL~~~ 188 (310)
.|++||||+|+|+.+..||+||+.+|+..+++|+||||..+... .. .+... .....+.++..+..++.|+.+
T Consensus 2 ~~~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~-~~-~~~~~------~~~~~~~~~~~~~~~~~l~~~ 73 (144)
T PRK15118 2 AYKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSD-LY-TGLID------VNLGDMQKRISEETHHALTEL 73 (144)
T ss_pred CceEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEccChhh-hh-hhhhh------cchHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999888999999999533211 00 11100 011223333344444555444
Q ss_pred HHHhhcCCCcEEEEEE-EcCChHHHHHHHhccCCCCEEEECCCCCCchhhhhcccCCCCcHHHHHHhhCCCCceEEEEcC
Q 021587 189 LDTCSQSKVMVDTVLI-ESDLVAKAILDLIPVLNIRKLVVGTTKSSLRVLRKSKSGRISGMADHILQTAPETCEIKVVCE 267 (310)
Q Consensus 189 ~~~~~~~gV~ve~~vv-eG~~~aeaIve~A~e~~aDLIVMGSrG~g~~~l~r~~s~llGSVA~~Vl~~Ap~~CpVlVV~~ 267 (310)
. ...|+.+...++ .|. |+++|+++|+++++||||||+||. . +++ +|||+.+|+++++ ||||||+.
T Consensus 74 ~---~~~~~~~~~~~~~~G~-p~~~I~~~a~~~~~DLIV~Gs~~~-~--~~~-----lgSva~~v~~~a~--~pVLvv~~ 139 (144)
T PRK15118 74 S---TNAGYPITETLSGSGD-LGQVLVDAIKKYDMDLVVCGHHQD-F--WSK-----LMSSARQLINTVH--VDMLIVPL 139 (144)
T ss_pred H---HhCCCCceEEEEEecC-HHHHHHHHHHHhCCCEEEEeCccc-H--HHH-----HHHHHHHHHhhCC--CCEEEecC
Confidence 3 445777654444 554 699999999999999999999974 3 343 3699999999999 99999985
Q ss_pred C
Q 021587 268 G 268 (310)
Q Consensus 268 ~ 268 (310)
.
T Consensus 140 ~ 140 (144)
T PRK15118 140 R 140 (144)
T ss_pred C
Confidence 3
No 6
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.87 E-value=5.1e-21 Score=156.30 Aligned_cols=132 Identities=23% Similarity=0.323 Sum_probs=109.0
Q ss_pred EEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEecCCCcCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 021587 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDT 191 (310)
Q Consensus 112 kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~~~~~ip~~~g~ip~~~~~~e~~e~~~~~~~e~a~elL~~~~~~ 191 (310)
+||||+|+++.+++||++|..+|...+++|+++||+++..... . . . .....+..++.++.+.+.
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~------~----~--~----~~~~~~~~~~~~~~~~~~ 64 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPNHSS------P----S--Q----LEVNVQRARKLLRQAERI 64 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCCC------c----c--h----hHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999998999999999998642110 0 0 0 112234566788888888
Q ss_pred hhcCCCcEEEEEEEcCChHHHHHHHhccCCCCEEEECCCCCCchhhhhcccCCCCcHHHHHHhhCCCCceEEEEc
Q 021587 192 CSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRVLRKSKSGRISGMADHILQTAPETCEIKVVC 266 (310)
Q Consensus 192 ~~~~gV~ve~~vveG~~~aeaIve~A~e~~aDLIVMGSrG~g~~~l~r~~s~llGSVA~~Vl~~Ap~~CpVlVV~ 266 (310)
+.+.|++++..+..++.+.++|+++++++++|+||||+++++. +.++ ++||++.+|+++++ |||+||+
T Consensus 65 ~~~~g~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~~~~~--~~~~---~lGs~~~~v~~~~~--~pvlvv~ 132 (132)
T cd01988 65 AASLGVPVHTIIRIDHDIASGILRTAKERQADLIIMGWHGSTS--LRDR---LFGGVIDQVLESAP--CDVAVVK 132 (132)
T ss_pred hhhcCCceEEEEEecCCHHHHHHHHHHhcCCCEEEEecCCCCC--ccce---ecCchHHHHHhcCC--CCEEEeC
Confidence 8888999888877666689999999999999999999999976 4555 68999999999999 9999985
No 7
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=99.87 E-value=3.8e-21 Score=155.06 Aligned_cols=139 Identities=27% Similarity=0.303 Sum_probs=97.9
Q ss_pred CCEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEecCCCcCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 021587 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFL 189 (310)
Q Consensus 110 ~~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~~~~~ip~~~g~ip~~~~~~e~~e~~~~~~~e~a~elL~~~~ 189 (310)
+++||||+|+++.+.+|++||+++|...+++|++|||++....... ............+..........
T Consensus 2 ~~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~ 70 (140)
T PF00582_consen 2 YKRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPPPQYSF-----------SAAEDEESEEEAEEEEQARQAEA 70 (140)
T ss_dssp TSEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESCHCHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeecccccccc-----------ccccccccccccchhhhhhhHHH
Confidence 5899999999999999999999999999999999999987532100 00000000000001000000000
Q ss_pred HHhhcCCCcEEEEEEEcCChHHHHHHHhccCCCCEEEECCCCCCchhhhhcccCCCCcHHHHHHhhCCCCceEEEEc
Q 021587 190 DTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRVLRKSKSGRISGMADHILQTAPETCEIKVVC 266 (310)
Q Consensus 190 ~~~~~~gV~ve~~vveG~~~aeaIve~A~e~~aDLIVMGSrG~g~~~l~r~~s~llGSVA~~Vl~~Ap~~CpVlVV~ 266 (310)
..+...+.......+..++++++|++++++.++|+||||+++++. +.++ ++|+++.+|+++++ |||+|||
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~dliv~G~~~~~~--~~~~---~~gs~~~~l~~~~~--~pVlvv~ 140 (140)
T PF00582_consen 71 EEAEAEGGIVIEVVIESGDVADAIIEFAEEHNADLIVMGSRGRSG--LERL---LFGSVAEKLLRHAP--CPVLVVP 140 (140)
T ss_dssp HHHHHHTTSEEEEEEEESSHHHHHHHHHHHTTCSEEEEESSSTTS--TTTS---SSHHHHHHHHHHTS--SEEEEEE
T ss_pred HHHhhhccceeEEEEEeeccchhhhhccccccceeEEEeccCCCC--ccCC---CcCCHHHHHHHcCC--CCEEEeC
Confidence 222223444444555556789999999999999999999999866 5777 79999999999999 9999996
No 8
>PRK10116 universal stress protein UspC; Provisional
Probab=99.86 E-value=1.6e-20 Score=156.80 Aligned_cols=138 Identities=14% Similarity=0.184 Sum_probs=104.0
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEecCCCcCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 021587 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKF 188 (310)
Q Consensus 109 ~~~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~~~~~ip~~~g~ip~~~~~~e~~e~~~~~~~e~a~elL~~~ 188 (310)
.|++|||++|+|+.+..||++|+++|+..+++|+++|++++.... .. ......+.+.+..+++.++.|+++
T Consensus 2 ~~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~---~~------~~~~~~~~~~~~~~~~~~~~l~~~ 72 (142)
T PRK10116 2 SYSNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLASDPEMY---NQ------FAAPMLEDLRSVMQEETQSFLDKL 72 (142)
T ss_pred CCceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEccCcccc---hh------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999999999889999999998754211 11 111222344444555555666655
Q ss_pred HHHhhcCCCcEEE-EEEEcCChHHHHHHHhccCCCCEEEECCCCCCchhhhhcccCCCCcHHHHHHhhCCCCceEEEEcC
Q 021587 189 LDTCSQSKVMVDT-VLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRVLRKSKSGRISGMADHILQTAPETCEIKVVCE 267 (310)
Q Consensus 189 ~~~~~~~gV~ve~-~vveG~~~aeaIve~A~e~~aDLIVMGSrG~g~~~l~r~~s~llGSVA~~Vl~~Ap~~CpVlVV~~ 267 (310)
. ...++.... ++..| .+.+.|++++++.++||||||+||++. +.++ + +|+.+|+++++ |||||||.
T Consensus 73 ~---~~~~~~~~~~~~~~G-~~~~~I~~~a~~~~~DLiV~g~~~~~~--~~~~----~-s~a~~v~~~~~--~pVLvv~~ 139 (142)
T PRK10116 73 I---QDADYPIEKTFIAYG-ELSEHILEVCRKHHFDLVICGNHNHSF--FSRA----S-CSAKRVIASSE--VDVLLVPL 139 (142)
T ss_pred H---HhcCCCeEEEEEecC-CHHHHHHHHHHHhCCCEEEEcCCcchH--HHHH----H-HHHHHHHhcCC--CCEEEEeC
Confidence 4 345666543 44455 569999999999999999999999876 5665 2 79999999999 99999985
Q ss_pred C
Q 021587 268 G 268 (310)
Q Consensus 268 ~ 268 (310)
.
T Consensus 140 ~ 140 (142)
T PRK10116 140 T 140 (142)
T ss_pred C
Confidence 4
No 9
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=99.86 E-value=1.1e-20 Score=154.37 Aligned_cols=123 Identities=20% Similarity=0.250 Sum_probs=99.9
Q ss_pred EEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEecCCCcCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 021587 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDT 191 (310)
Q Consensus 112 kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~~~~~ip~~~g~ip~~~~~~e~~e~~~~~~~e~a~elL~~~~~~ 191 (310)
+||||+|+|+.+++|++||+.++...+++|++|||.++... . .. ++.++.|+.+.+.
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~------~-----~~------------~~~~~~l~~~~~~ 57 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLN------R-----LS------------EAERRRLAEALRL 57 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCccc------c-----CC------------HHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999875311 0 00 1234456666666
Q ss_pred hhcCCCcEEEEEEEcCChHHHHHHHhccCCCCEEEECCCCCCchhhhhcccCCCCcHHHHHHhhC-CCCceEEEEc
Q 021587 192 CSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRVLRKSKSGRISGMADHILQTA-PETCEIKVVC 266 (310)
Q Consensus 192 ~~~~gV~ve~~vveG~~~aeaIve~A~e~~aDLIVMGSrG~g~~~l~r~~s~llGSVA~~Vl~~A-p~~CpVlVV~ 266 (310)
+++.++. ..++.+++++++|+++++++++|+||||+|+++. +.++ ++||++.+|++++ + |||||++
T Consensus 58 ~~~~~~~--~~~~~~~~~~~~I~~~~~~~~~dllviG~~~~~~--~~~~---~~Gs~~~~v~~~a~~--~~v~v~~ 124 (124)
T cd01987 58 AEELGAE--VVTLPGDDVAEAIVEFAREHNVTQIVVGKSRRSR--WREL---FRGSLVDRLLRRAGN--IDVHIVA 124 (124)
T ss_pred HHHcCCE--EEEEeCCcHHHHHHHHHHHcCCCEEEeCCCCCch--HHHH---hcccHHHHHHHhCCC--CeEEEeC
Confidence 6655554 4455667789999999999999999999999987 6887 7999999999999 5 9999984
No 10
>PRK11175 universal stress protein UspE; Provisional
Probab=99.84 E-value=3.6e-20 Score=173.34 Aligned_cols=145 Identities=14% Similarity=0.142 Sum_probs=114.1
Q ss_pred CCEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEecCCCcCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 021587 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFL 189 (310)
Q Consensus 110 ~~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~~~~~ip~~~g~ip~~~~~~e~~e~~~~~~~e~a~elL~~~~ 189 (310)
+++||||+|+|+.+..|+++|+.+|+..+++|++|||+++... +. .+. ..........++..+..++.|+++.
T Consensus 3 ~~~ILv~~D~s~~~~~al~~a~~lA~~~~a~l~ll~v~~~~~~-~~-~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~ 75 (305)
T PRK11175 3 YQNILVVIDPNQDDQPALRRAVYLAQRNGGKITAFLPIYDFSY-EM-TTL-----LSPDEREAMRQGVISQRTAWIREQA 75 (305)
T ss_pred cceEEEEcCCCccccHHHHHHHHHHHhcCCCEEEEEeccCchh-hh-hcc-----cchhHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999865321 11 111 1111222223334455667788877
Q ss_pred HHhhcCCCcEEEEEEEcCChHHHHHHHhccCCCCEEEECCCCCCchhhhhcccCCCCcHHHHHHhhCCCCceEEEEcCC
Q 021587 190 DTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRVLRKSKSGRISGMADHILQTAPETCEIKVVCEG 268 (310)
Q Consensus 190 ~~~~~~gV~ve~~vveG~~~aeaIve~A~e~~aDLIVMGSrG~g~~~l~r~~s~llGSVA~~Vl~~Ap~~CpVlVV~~~ 268 (310)
..+...+++++..+..++.+.++|+++|+++++||||||+||.+. +.++ ++||++.+|+++++ ||||+|+.+
T Consensus 76 ~~~~~~~~~~~~~v~~~g~~~~~i~~~a~~~~~DLiV~G~~~~~~--~~~~---~~gs~~~~l~~~~~--~pvlvv~~~ 147 (305)
T PRK11175 76 KPYLDAGIPIEIKVVWHNRPFEAIIQEVIAGGHDLVVKMTHQHDK--LESV---IFTPTDWHLLRKCP--CPVLMVKDQ 147 (305)
T ss_pred HHHhhcCCceEEEEecCCCcHHHHHHHHHhcCCCEEEEeCCCCcH--HHhh---ccChhHHHHHhcCC--CCEEEeccc
Confidence 777777899988777555669999999999999999999999876 5777 78999999999999 999999975
No 11
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=99.78 E-value=1.5e-17 Score=137.94 Aligned_cols=148 Identities=22% Similarity=0.233 Sum_probs=115.8
Q ss_pred CCCEEEEeec-CCHHHHHHHHHHHHHhcCCCCEEEEEEEecCCCcCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 021587 109 EEDIIYVAVG-KSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQK 187 (310)
Q Consensus 109 ~~~kILVAVD-gSe~S~~AL~wAl~lA~~~ga~L~LVHVi~~~~~ip~~~g~ip~~~~~~e~~e~~~~~~~e~a~elL~~ 187 (310)
.+++||+++| +++.+..|+.+|..++...++.+++++|.+.............. ..............++.++.
T Consensus 4 ~~~~il~~~d~~s~~~~~a~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 78 (154)
T COG0589 4 MYKKILVAVDVGSEAAEKALEEAVALAKRLGAPLILLVVIDPLEPTALVSVALAD-----APIPLSEEELEEEAEELLAE 78 (154)
T ss_pred ccceEEEEeCCCCHHHHHHHHHHHHHHHhcCCeEEEEEEeccccccccccccccc-----chhhhhHHHHHHHHHHHHHH
Confidence 4689999999 99999999999999999999999999999765321111100000 00111223345566778888
Q ss_pred HHHHhhcCCCc-EEEEEEEcCChHHHHHHHhccCCCCEEEECCCCCCchhhhhcccCCCCcHHHHHHhhCCCCceEEEEc
Q 021587 188 FLDTCSQSKVM-VDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRVLRKSKSGRISGMADHILQTAPETCEIKVVC 266 (310)
Q Consensus 188 ~~~~~~~~gV~-ve~~vveG~~~aeaIve~A~e~~aDLIVMGSrG~g~~~l~r~~s~llGSVA~~Vl~~Ap~~CpVlVV~ 266 (310)
+.+.+...++. ++..+.+|.+..+.|++++.++++|+||||++|++. ++++ ++||++.+|+++++ |||++|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~a~~~~adliV~G~~g~~~--l~~~---llGsvs~~v~~~~~--~pVlvv~ 151 (154)
T COG0589 79 AKALAEAAGVPVVETEVVEGSPSAEEILELAEEEDADLIVVGSRGRSG--LSRL---LLGSVAEKVLRHAP--CPVLVVR 151 (154)
T ss_pred HHHHHHHcCCCeeEEEEecCCCcHHHHHHHHHHhCCCEEEECCCCCcc--ccce---eeehhHHHHHhcCC--CCEEEEc
Confidence 88888888888 488888888768999999999999999999999977 5776 79999999999999 9999998
Q ss_pred CC
Q 021587 267 EG 268 (310)
Q Consensus 267 ~~ 268 (310)
..
T Consensus 152 ~~ 153 (154)
T COG0589 152 SE 153 (154)
T ss_pred cC
Confidence 64
No 12
>PRK11175 universal stress protein UspE; Provisional
Probab=99.78 E-value=3.4e-18 Score=160.01 Aligned_cols=143 Identities=16% Similarity=0.219 Sum_probs=102.5
Q ss_pred CCCEEEEeecCCHH-------HHHHHHHHHHHhcCC-CCEEEEEEEecCCCcCCCCCCCCCCCCCChhHHHHHHHHHHHH
Q 021587 109 EEDIIYVAVGKSQS-------SMDALSWTLRHAVNP-STLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGK 180 (310)
Q Consensus 109 ~~~kILVAVDgSe~-------S~~AL~wAl~lA~~~-ga~L~LVHVi~~~~~ip~~~g~ip~~~~~~e~~e~~~~~~~e~ 180 (310)
.+++||||+|+|+. +..||++|+++|... +++|+||||++..... . ...++. . ....+.+..++.
T Consensus 151 ~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~~~~~-~-~~~~~~--~---~~~~~~~~~~~~ 223 (305)
T PRK11175 151 EGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPVTPIN-I-AIELPE--F---DPSVYNDAIRGQ 223 (305)
T ss_pred CCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecCcchh-c-cccccc--c---chhhHHHHHHHH
Confidence 46899999999865 378999999999887 9999999999754210 0 000110 0 112233333444
Q ss_pred HHHHHHHHHHHhhcCCCcEE-EEEEEcCChHHHHHHHhccCCCCEEEECCCCCCchhhhhcccCCCCcHHHHHHhhCCCC
Q 021587 181 RRQLLQKFLDTCSQSKVMVD-TVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRVLRKSKSGRISGMADHILQTAPET 259 (310)
Q Consensus 181 a~elL~~~~~~~~~~gV~ve-~~vveG~~~aeaIve~A~e~~aDLIVMGSrG~g~~~l~r~~s~llGSVA~~Vl~~Ap~~ 259 (310)
.++.++++.+. .++... .++..|. +.++|+++|+++++||||||++|++. +.++ ++||++.+|+++++
T Consensus 224 ~~~~l~~~~~~---~~~~~~~~~v~~G~-~~~~I~~~a~~~~~DLIVmG~~~~~~--~~~~---llGS~a~~v~~~~~-- 292 (305)
T PRK11175 224 HLLAMKALRQK---FGIDEEQTHVEEGL-PEEVIPDLAEHLDAELVILGTVGRTG--LSAA---FLGNTAEHVIDHLN-- 292 (305)
T ss_pred HHHHHHHHHHH---hCCChhheeeccCC-HHHHHHHHHHHhCCCEEEECCCccCC--Ccce---eecchHHHHHhcCC--
Confidence 44455555433 355443 4455564 69999999999999999999999977 6777 79999999999999
Q ss_pred ceEEEEcCCc
Q 021587 260 CEIKVVCEGK 269 (310)
Q Consensus 260 CpVlVV~~~k 269 (310)
||||||+...
T Consensus 293 ~pVLvv~~~~ 302 (305)
T PRK11175 293 CDLLAIKPDG 302 (305)
T ss_pred CCEEEEcCCC
Confidence 9999997543
No 13
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=99.76 E-value=2.4e-17 Score=131.78 Aligned_cols=130 Identities=31% Similarity=0.427 Sum_probs=108.0
Q ss_pred EEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEecCCCcCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 021587 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDT 191 (310)
Q Consensus 112 kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~~~~~ip~~~g~ip~~~~~~e~~e~~~~~~~e~a~elL~~~~~~ 191 (310)
+||||+|+++.+..+++||.++|...+++|++|||.++....+ . ...+....+.++.|+.+...
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~------------~----~~~~~~~~~~~~~l~~~~~~ 64 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPSSA------------A----ELAELLEEEARALLEALREA 64 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcc------------h----hHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999987642110 0 12233445667888888887
Q ss_pred hhcCCCcEEEEEEEcCChHHHHHHHhccCCCCEEEECCCCCCchhhhhcccCCCCcHHHHHHhhCCCCceEEEE
Q 021587 192 CSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRVLRKSKSGRISGMADHILQTAPETCEIKVV 265 (310)
Q Consensus 192 ~~~~gV~ve~~vveG~~~aeaIve~A~e~~aDLIVMGSrG~g~~~l~r~~s~llGSVA~~Vl~~Ap~~CpVlVV 265 (310)
+...++.+...+..|.+ +++|++++++.++|+||||+++++. +.++ +.|+++.+++++++ |||++|
T Consensus 65 ~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~dlvvig~~~~~~--~~~~---~~~~~~~~ll~~~~--~pvliv 130 (130)
T cd00293 65 LAEAGVKVETVVLEGDP-AEAILEAAEELGADLIVMGSRGRSG--LRRL---LLGSVAERVLRHAP--CPVLVV 130 (130)
T ss_pred HhcCCCceEEEEecCCC-HHHHHHHHHHcCCCEEEEcCCCCCc--ccee---eeccHHHHHHhCCC--CCEEeC
Confidence 77778988888887775 8999999999999999999999876 5565 68999999999988 999985
No 14
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=99.53 E-value=9.9e-14 Score=135.11 Aligned_cols=105 Identities=14% Similarity=0.209 Sum_probs=78.1
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHHhcCC--CCEEEEEEEecCCCcCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 021587 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNP--STLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQ 186 (310)
Q Consensus 109 ~~~kILVAVDgSe~S~~AL~wAl~lA~~~--ga~L~LVHVi~~~~~ip~~~g~ip~~~~~~e~~e~~~~~~~e~a~elL~ 186 (310)
.|+|||||+|||+.|++|+++|+++|+.. +++|++|||.+..... .. .. ...+..+++++
T Consensus 4 ~ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~---~~--------~~-------~~~~~~eelle 65 (357)
T PRK12652 4 AANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVD---PE--------GQ-------DELAAAEELLE 65 (357)
T ss_pred ccCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCcccc---cc--------hh-------HHHHHHHHHHH
Confidence 57999999999999999999999999874 6999999999854210 00 00 11122333444
Q ss_pred HHHHHhhc------CCCcEEEEEEEc-------CChHHHHHHHhccCCCCEEEECCCC
Q 021587 187 KFLDTCSQ------SKVMVDTVLIES-------DLVAKAILDLIPVLNIRKLVVGTTK 231 (310)
Q Consensus 187 ~~~~~~~~------~gV~ve~~vveG-------~~~aeaIve~A~e~~aDLIVMGSrG 231 (310)
++.+.+++ .|+++++.++.+ ++|+++|+++|+++++||||||-.-
T Consensus 66 ~~~~~~~~~l~~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~ 123 (357)
T PRK12652 66 RVEVWATEDLGDDASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEY 123 (357)
T ss_pred HHHHHHHHhhhcccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCC
Confidence 44443332 589999888773 4679999999999999999999874
No 15
>PRK10490 sensor protein KdpD; Provisional
Probab=99.24 E-value=1.3e-10 Score=125.07 Aligned_cols=128 Identities=18% Similarity=0.230 Sum_probs=100.2
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEecCCCcCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 021587 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKF 188 (310)
Q Consensus 109 ~~~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~~~~~ip~~~g~ip~~~~~~e~~e~~~~~~~e~a~elL~~~ 188 (310)
..++|||||++++.+++++++|.++|.+.++++++|||..+.. .. ... ..++.+.+.
T Consensus 249 ~~eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~------~~-----~~~------------~~~~~l~~~ 305 (895)
T PRK10490 249 TRDAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRL------HR-----LPE------------KKRRAILSA 305 (895)
T ss_pred cCCeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCc------Cc-----CCH------------HHHHHHHHH
Confidence 4578999999999999999999999999999999999986521 00 011 112223333
Q ss_pred HHHhhcCCCcEEEEEEEcCChHHHHHHHhccCCCCEEEECCCCCCchhhhhcccCCCCcHHHHHHhhCCCCceEEEEcCC
Q 021587 189 LDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRVLRKSKSGRISGMADHILQTAPETCEIKVVCEG 268 (310)
Q Consensus 189 ~~~~~~~gV~ve~~vveG~~~aeaIve~A~e~~aDLIVMGSrG~g~~~l~r~~s~llGSVA~~Vl~~Ap~~CpVlVV~~~ 268 (310)
.+.+++.|.+ .+.+.|++++++|+++|++++++.||||.+++++ + | +.||+++++++.++ ..+|+||+..
T Consensus 306 ~~lA~~lGa~--~~~~~~~dva~~i~~~A~~~~vt~IViG~s~~~~--~--~---~~~s~~~~l~r~~~-~idi~iv~~~ 375 (895)
T PRK10490 306 LRLAQELGAE--TATLSDPAEEKAVLRYAREHNLGKIIIGRRASRR--W--W---RRESFADRLARLGP-DLDLVIVALD 375 (895)
T ss_pred HHHHHHcCCE--EEEEeCCCHHHHHHHHHHHhCCCEEEECCCCCCC--C--c---cCCCHHHHHHHhCC-CCCEEEEeCC
Confidence 3466665655 4566789999999999999999999999998876 3 4 57899999999998 5999999754
Q ss_pred c
Q 021587 269 K 269 (310)
Q Consensus 269 k 269 (310)
.
T Consensus 376 ~ 376 (895)
T PRK10490 376 E 376 (895)
T ss_pred c
Confidence 3
No 16
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=99.05 E-value=2.8e-09 Score=111.61 Aligned_cols=132 Identities=20% Similarity=0.187 Sum_probs=107.2
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEecCCCcCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 021587 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKF 188 (310)
Q Consensus 109 ~~~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~~~~~ip~~~g~ip~~~~~~e~~e~~~~~~~e~a~elL~~~ 188 (310)
...+||||+++++.+.+.+++|.++|.+.++++++|||..+... . ..+..++.|...
T Consensus 247 ~~e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v~~~~~~-----~------------------~~~~~~~~l~~~ 303 (890)
T COG2205 247 ARERILVCISGSPGSEKLIRRAARLASRLHAKWTAVYVETPELH-----R------------------LSEKEARRLHEN 303 (890)
T ss_pred ccceEEEEECCCCchHHHHHHHHHHHHHhCCCeEEEEEeccccc-----c------------------ccHHHHHHHHHH
Confidence 34799999999999999999999999999999999999865421 0 012334456666
Q ss_pred HHHhhcCCCcEEEEEEEcCChHHHHHHHhccCCCCEEEECCCCCCchhhhhcccCCCCcHHHHHHhhCCCCceEEEEcCC
Q 021587 189 LDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRVLRKSKSGRISGMADHILQTAPETCEIKVVCEG 268 (310)
Q Consensus 189 ~~~~~~~gV~ve~~vveG~~~aeaIve~A~e~~aDLIVMGSrG~g~~~l~r~~s~llGSVA~~Vl~~Ap~~CpVlVV~~~ 268 (310)
...+++.| .+++.+.|++++++|++||+.+++..||||.+.+.. ++++ +.|+.+.++++.++ ..+|.+|+.+
T Consensus 304 ~~Lae~lG--ae~~~l~~~dv~~~i~~ya~~~~~TkiViG~~~~~r--w~~~---~~~~l~~~L~~~~~-~idv~ii~~~ 375 (890)
T COG2205 304 LRLAEELG--AEIVTLYGGDVAKAIARYAREHNATKIVIGRSRRSR--WRRL---FKGSLADRLAREAP-GIDVHIVALD 375 (890)
T ss_pred HHHHHHhC--CeEEEEeCCcHHHHHHHHHHHcCCeeEEeCCCcchH--HHHH---hcccHHHHHHhcCC-CceEEEeeCC
Confidence 66776644 456677889999999999999999999999998877 4666 57999999999998 5999999876
Q ss_pred ccc
Q 021587 269 KEV 271 (310)
Q Consensus 269 k~v 271 (310)
...
T Consensus 376 ~~~ 378 (890)
T COG2205 376 APP 378 (890)
T ss_pred CCc
Confidence 654
No 17
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=98.31 E-value=2.4e-06 Score=65.83 Aligned_cols=84 Identities=12% Similarity=0.091 Sum_probs=68.0
Q ss_pred EEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEecCCCcCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHh
Q 021587 113 IYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTC 192 (310)
Q Consensus 113 ILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~~~~~ip~~~g~ip~~~~~~e~~e~~~~~~~e~a~elL~~~~~~~ 192 (310)
||||++|+..|..++.||.+.+ +.+.+++++|+-
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~-~~~~~~~~~~~~--------------------------------------------- 34 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLK-SGGPEVVALVVV--------------------------------------------- 34 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHH-hcCCCEEEEEeH---------------------------------------------
Confidence 6899999999999999999877 456677777762
Q ss_pred hcCCCcEEEEEEEcCChHHHHHHHhccCCCCEEEECCCCCCchhhhhcccCCCC-cHHHHHHhhCCCCceEEE
Q 021587 193 SQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRVLRKSKSGRIS-GMADHILQTAPETCEIKV 264 (310)
Q Consensus 193 ~~~gV~ve~~vveG~~~aeaIve~A~e~~aDLIVMGSrG~g~~~l~r~~s~llG-SVA~~Vl~~Ap~~CpVlV 264 (310)
...+.+.++++++++|+|++|+++... .... ++| +++.++++.++ |||+.
T Consensus 35 ---------------~~~~~~~~~a~~~~~~~Iv~G~~~~d~--~~~~---~~~~~~~~~~~~~~~--~~vl~ 85 (86)
T cd01984 35 ---------------AFVRILKRLAAEEGADVIILGHNADDV--AGRR---LGASANVLVVIKGAG--IPVLT 85 (86)
T ss_pred ---------------HHHHHHHHHHHHcCCCEEEEcCCchhh--hhhc---cCchhhhhhcccccC--CceeC
Confidence 346777788888999999999998865 3544 566 88999999988 99873
No 18
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=96.82 E-value=0.016 Score=50.74 Aligned_cols=94 Identities=13% Similarity=0.147 Sum_probs=63.2
Q ss_pred EEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEecCCCcCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 021587 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDT 191 (310)
Q Consensus 112 kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~~~~~ip~~~g~ip~~~~~~e~~e~~~~~~~e~a~elL~~~~~~ 191 (310)
||+|++.|...|.-++.++.+.+...+.++.++||-.... . ...+..+.+...
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~g~~---------------~------------~~~~~~~~~~~~ 53 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDHGLR---------------P------------ESDEEAEFVQQF 53 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCC---------------h------------hHHHHHHHHHHH
Confidence 5999999999999999998887765667799999853210 0 001122344445
Q ss_pred hhcCCCcEEEEEEEc--------CChH--------HHHHHHhccCCCCEEEECCCCC
Q 021587 192 CSQSKVMVDTVLIES--------DLVA--------KAILDLIPVLNIRKLVVGTTKS 232 (310)
Q Consensus 192 ~~~~gV~ve~~vveG--------~~~a--------eaIve~A~e~~aDLIVMGSrG~ 232 (310)
|+..|++....-+.. .... ..+.++|++++++.|+.|.+..
T Consensus 54 ~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~ 110 (189)
T TIGR02432 54 CKKLNIPLEIKKVDVKALAKGKKKNLEEAAREARYDFFEEIAKKHGADYILTAHHAD 110 (189)
T ss_pred HHHcCCCEEEEEecchhhccccCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCccH
Confidence 555677665433311 1122 5777899999999999999975
No 19
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=96.63 E-value=0.019 Score=62.19 Aligned_cols=150 Identities=11% Similarity=0.192 Sum_probs=85.1
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHH--hcCCCCEEEEEEEecCCCc-CCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHH
Q 021587 109 EEDIIYVAVGKSQSSMDALSWTLRH--AVNPSTLIFLIHVFPQVKF-VPSPLGKLPRNQVNPEQLETFMAQETGKRRQLL 185 (310)
Q Consensus 109 ~~~kILVAVDgSe~S~~AL~wAl~l--A~~~ga~L~LVHVi~~~~~-ip~~~g~ip~~~~~~e~~e~~~~~~~e~a~elL 185 (310)
..-|||+|+-..++-...+..+-.. ..+..-.++++|.++.... .+.. ++.. ....... ...+.....++++
T Consensus 457 ~elriL~cv~~~~~v~~li~Lle~s~~t~~sp~~vy~lhLveL~~r~~~~l---~~h~-~~~~~~~-~~~~~~~~~~~i~ 531 (832)
T PLN03159 457 AELRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHLVELTGRASAML---IVHN-TRKSGRP-ALNRTQAQSDHII 531 (832)
T ss_pred CceeEEEEeccCCcHHHHHHHHHhcCCCCCCCceEEEEEEEeecCCCccce---eeee-ccccccc-ccccccccccHHH
Confidence 4578999999887777777654332 2234468999999874321 1110 0000 0000000 0000011234555
Q ss_pred HHHHHHhhc-CCCcEEEEEE--EcCChHHHHHHHhccCCCCEEEECCCCCCchhhhhcc---cCCCCcHHHHHHhhCCCC
Q 021587 186 QKFLDTCSQ-SKVMVDTVLI--ESDLVAKAILDLIPVLNIRKLVVGTTKSSLRVLRKSK---SGRISGMADHILQTAPET 259 (310)
Q Consensus 186 ~~~~~~~~~-~gV~ve~~vv--eG~~~aeaIve~A~e~~aDLIVMGSrG~g~~~l~r~~---s~llGSVA~~Vl~~Ap~~ 259 (310)
..+....+. .++.++.... ......+.|+..|++..+++||++=|++.. ...-+ ....+.+-.+|+++||
T Consensus 532 ~af~~~~~~~~~v~v~~~t~vs~~~~mh~dIc~~A~d~~~slIilpfhk~~~--~dg~~~~~~~~~r~~n~~VL~~Ap-- 607 (832)
T PLN03159 532 NAFENYEQHAGCVSVQPLTAISPYSTMHEDVCNLAEDKRVSLIIIPFHKQQT--VDGGMEATNPAFRGVNQNVLANAP-- 607 (832)
T ss_pred HHHHHHHhhcCceEEEEEEEEeCcccHHHHHHHHHHhcCCCEEEECCCCccC--CCCCccccCchHHHHHHHHHccCC--
Confidence 555444432 2576765443 334789999999999999999999996521 11100 0023556799999999
Q ss_pred ceEEEEcC
Q 021587 260 CEIKVVCE 267 (310)
Q Consensus 260 CpVlVV~~ 267 (310)
|+|-|.=+
T Consensus 608 CsVgIlVD 615 (832)
T PLN03159 608 CSVGILVD 615 (832)
T ss_pred CCEEEEEe
Confidence 87765533
No 20
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=95.98 E-value=0.085 Score=45.78 Aligned_cols=95 Identities=14% Similarity=0.102 Sum_probs=62.2
Q ss_pred EEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEecCCCcCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 021587 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDT 191 (310)
Q Consensus 112 kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~~~~~ip~~~g~ip~~~~~~e~~e~~~~~~~e~a~elL~~~~~~ 191 (310)
+|+|++.|...|.-++.++.+.....+.++.+||+-.... . ...+.++.+.+.
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~~~~---------------~------------~~~~~~~~~~~~ 53 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDHGLR---------------P------------ESDEEAAFVADL 53 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCCC---------------c------------hHHHHHHHHHHH
Confidence 5899999999999999999887655567899999953210 0 001223334444
Q ss_pred hhcCCCcEEEE--EE-EcCCh----------HHHHHHHhccCCCCEEEECCCCCC
Q 021587 192 CSQSKVMVDTV--LI-ESDLV----------AKAILDLIPVLNIRKLVVGTTKSS 233 (310)
Q Consensus 192 ~~~~gV~ve~~--vv-eG~~~----------aeaIve~A~e~~aDLIVMGSrG~g 233 (310)
|...|++.... .. .+... ...+.++|++++++.|+.|.+...
T Consensus 54 ~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~dD 108 (185)
T cd01992 54 CAKLGIPLYILVVALAPKPGGNLEAAAREARYDFFAEIAKEHGADVLLTAHHADD 108 (185)
T ss_pred HHHcCCcEEEEeeccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcHH
Confidence 55557766543 11 11110 145778999999999999999653
No 21
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=95.95 E-value=0.088 Score=46.20 Aligned_cols=94 Identities=16% Similarity=0.157 Sum_probs=56.5
Q ss_pred EEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEecCCCcCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 021587 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDT 191 (310)
Q Consensus 112 kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~~~~~ip~~~g~ip~~~~~~e~~e~~~~~~~e~a~elL~~~~~~ 191 (310)
||+||+-|.+.|...|....++....+-++.++||-.... . . ..+..+...+.
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~~------~-------~--------------s~~~~~~v~~~ 53 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHGLR------E-------E--------------SDEEAEFVEEI 53 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-STS------C-------C--------------HHHHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCC------c-------c--------------cchhHHHHHHH
Confidence 6999999999999988888888777788999999975321 0 0 00111233445
Q ss_pred hhcCCCcEEEEEEE-----cCC---h-----HHHHHHHhccCCCCEEEECCCCC
Q 021587 192 CSQSKVMVDTVLIE-----SDL---V-----AKAILDLIPVLNIRKLVVGTTKS 232 (310)
Q Consensus 192 ~~~~gV~ve~~vve-----G~~---~-----aeaIve~A~e~~aDLIVMGSrG~ 232 (310)
|+..++.....-+. +.. . .+.|.++|.+++++.|++|.|..
T Consensus 54 ~~~~~i~~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~d 107 (182)
T PF01171_consen 54 CEQLGIPLYIVRIDEDRKKGSNIEECARELRYQFLREIAKEEGCNKIALGHHLD 107 (182)
T ss_dssp HHHTT-EEEEEE--CHCCTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BHH
T ss_pred HHhcCCceEEEEeeeeecccCCHHHHHHHHHHHHHHHhhhcccccceeecCcCC
Confidence 66667766654443 111 1 13566899999999999999964
No 22
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=94.77 E-value=0.29 Score=53.24 Aligned_cols=159 Identities=14% Similarity=0.176 Sum_probs=84.9
Q ss_pred CCEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEecCCCcCCCCC--CCCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 021587 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPL--GKLPRNQVNPEQLETFMAQETGKRRQLLQK 187 (310)
Q Consensus 110 ~~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~~~~~ip~~~--g~ip~~~~~~e~~e~~~~~~~e~a~elL~~ 187 (310)
..+|.+..=|.+.-++||.+|.+++..++-.++++|..+......... ...+.....+. .....+++++.-++.+++
T Consensus 630 ~~~v~~~F~GG~DDREALa~a~rma~~p~v~lTVirf~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~D~~~~~e 708 (832)
T PLN03159 630 SHHVAVLFFGGPDDREALAYAWRMSEHPGITLTVMRFIPGEDAAPTASQPASSPSDPRIPT-VETDGKKERQLDEEYINE 708 (832)
T ss_pred ceeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEEccccccccccccccccccccccc-ccccchhHHHHHHHHHHH
Confidence 458999998889999999999999999999999999986432111000 00000000000 000011122233566777
Q ss_pred HHHHhhc-CCCcEEEEEEEcCChHHHHHHHhcc--CCCCEEEECCCCC--Cch--hhhhccc-CCCCcHHHHHHhhC-CC
Q 021587 188 FLDTCSQ-SKVMVDTVLIESDLVAKAILDLIPV--LNIRKLVVGTTKS--SLR--VLRKSKS-GRISGMADHILQTA-PE 258 (310)
Q Consensus 188 ~~~~~~~-~gV~ve~~vveG~~~aeaIve~A~e--~~aDLIVMGSrG~--g~~--~l~r~~s-~llGSVA~~Vl~~A-p~ 258 (310)
++..... ..+.+..+++.+ +.+.+...++ .++||+|+|++.. +.. -+.+|-. -=+|-+-+.+.-.- ..
T Consensus 709 f~~~~~~~~~v~y~E~~V~~---~~e~~~~l~~~~~~ydL~iVGr~~~~~~~~~~gL~~w~e~pELG~iGD~LaS~d~~~ 785 (832)
T PLN03159 709 FRARNAGNESIVYTEKVVSN---GEETVAAIRSMDSAHDLFIVGRGQGMISPLTAGLTDWSECPELGAIGDLLASSDFAA 785 (832)
T ss_pred HHHhcCCCCceEEEEEecCC---HHHHHHHHHHhhccCcEEEEecCCCCCcchhccccccccCCccchhhhHHhcCCCCC
Confidence 7765532 346666555532 2333333332 2499999998632 110 0122200 02455555444321 11
Q ss_pred CceEEEEcCCcccc
Q 021587 259 TCEIKVVCEGKEVI 272 (310)
Q Consensus 259 ~CpVlVV~~~k~v~ 272 (310)
.-.||||.+.....
T Consensus 786 ~~SVLVvQQ~~~~~ 799 (832)
T PLN03159 786 TVSVLVVQQYVGTG 799 (832)
T ss_pred ceeEEEEEeeccCC
Confidence 25899999877433
No 23
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=94.13 E-value=0.5 Score=40.71 Aligned_cols=37 Identities=16% Similarity=-0.003 Sum_probs=29.6
Q ss_pred EEEEeecCCHHHHHHHHHHHHHhcCC--CCEEEEEEEec
Q 021587 112 IIYVAVGKSQSSMDALSWTLRHAVNP--STLIFLIHVFP 148 (310)
Q Consensus 112 kILVAVDgSe~S~~AL~wAl~lA~~~--ga~L~LVHVi~ 148 (310)
+|+|++.|...|.-++.++.+..... +-+++++|+-.
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~ 39 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDE 39 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEEC
Confidence 58999999999999988877765433 56889999864
No 24
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=91.86 E-value=1.3 Score=41.37 Aligned_cols=37 Identities=22% Similarity=0.101 Sum_probs=30.4
Q ss_pred CEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEecC
Q 021587 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQ 149 (310)
Q Consensus 111 ~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~~ 149 (310)
.+|+||+-|.+.|.-+|....++... -.+.++||-..
T Consensus 22 ~~ilVavSGGkDS~~ll~~L~~l~~~--~~~~a~~Vd~~ 58 (298)
T COG0037 22 YKILVAVSGGKDSLALLHLLKELGRR--IEVEAVHVDHG 58 (298)
T ss_pred CeEEEEeCCChHHHHHHHHHHHhccC--ceEEEEEecCC
Confidence 68999999999999888777665543 78999999754
No 25
>PRK12342 hypothetical protein; Provisional
Probab=89.98 E-value=3.3 Score=38.98 Aligned_cols=86 Identities=20% Similarity=0.190 Sum_probs=53.8
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCEEEEEEEecCCCcCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 021587 118 GKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKV 197 (310)
Q Consensus 118 DgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~~~~~ip~~~g~ip~~~~~~e~~e~~~~~~~e~a~elL~~~~~~~~~~gV 197 (310)
..++...+||+.|+++. ..+.+|++|++=++.. ...+++.++..+-...++
T Consensus 32 ~iNp~D~~AlE~AlrLk-~~g~~Vtvls~Gp~~a----------------------------~~~~l~r~alamGaD~av 82 (254)
T PRK12342 32 KISQFDLNAIEAASQLA-TDGDEIAALTVGGSLL----------------------------QNSKVRKDVLSRGPHSLY 82 (254)
T ss_pred cCChhhHHHHHHHHHHh-hcCCEEEEEEeCCChH----------------------------hHHHHHHHHHHcCCCEEE
Confidence 34888999999999988 6789999999854310 111222333332211122
Q ss_pred cEEEEEEEcCCh---HHHHHHHhccCCCCEEEECCCCC
Q 021587 198 MVDTVLIESDLV---AKAILDLIPVLNIRKLVVGTTKS 232 (310)
Q Consensus 198 ~ve~~vveG~~~---aeaIve~A~e~~aDLIVMGSrG~ 232 (310)
-+.-....|.++ +.+|..++++.++|||+.|....
T Consensus 83 li~d~~~~g~D~~ata~~La~~i~~~~~DLVl~G~~s~ 120 (254)
T PRK12342 83 LVQDAQLEHALPLDTAKALAAAIEKIGFDLLLFGEGSG 120 (254)
T ss_pred EEecCccCCCCHHHHHHHHHHHHHHhCCCEEEEcCCcc
Confidence 221111123344 68888999998999999998754
No 26
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=89.78 E-value=5.1 Score=37.27 Aligned_cols=93 Identities=11% Similarity=0.071 Sum_probs=57.8
Q ss_pred CCEEEEeecCCHHHHHHHHHHHHHhcCC--CCEEEEEEEecCCCcCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 021587 110 EDIIYVAVGKSQSSMDALSWTLRHAVNP--STLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQK 187 (310)
Q Consensus 110 ~~kILVAVDgSe~S~~AL~wAl~lA~~~--ga~L~LVHVi~~~~~ip~~~g~ip~~~~~~e~~e~~~~~~~e~a~elL~~ 187 (310)
.++|+||+.|...|...|.++.++.... +-+|..||+-.-. .++ .. + .
T Consensus 29 ~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~g~------~~~------~~-----------~----~--- 78 (258)
T PRK10696 29 GDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQKQ------PGF------PE-----------H----V--- 78 (258)
T ss_pred CCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecCCC------CCC------CH-----------H----H---
Confidence 4689999999999998887776654432 3478888874311 010 00 0 1
Q ss_pred HHHHhhcCCCcEEEEEEE-----------cCC--------hHHHHHHHhccCCCCEEEECCCCC
Q 021587 188 FLDTCSQSKVMVDTVLIE-----------SDL--------VAKAILDLIPVLNIRKLVVGTTKS 232 (310)
Q Consensus 188 ~~~~~~~~gV~ve~~vve-----------G~~--------~aeaIve~A~e~~aDLIVMGSrG~ 232 (310)
+.+.|++.|+....+-.. +.. -...+.++|++.++|.|++|.|..
T Consensus 79 ~~~~~~~lgI~~~v~~~~~~~~~~~~~~~~~~~c~~c~~~R~~~l~~~a~~~g~~~Ia~GH~~d 142 (258)
T PRK10696 79 LPEYLESLGVPYHIEEQDTYSIVKEKIPEGKTTCSLCSRLRRGILYRTARELGATKIALGHHRD 142 (258)
T ss_pred HHHHHHHhCCCEEEEEecchhhhhhhhccCCChhHHHHHHHHHHHHHHHHHcCCCEEEEcCchH
Confidence 133455566665532221 111 113566889999999999999975
No 27
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=89.68 E-value=2.3 Score=39.49 Aligned_cols=35 Identities=14% Similarity=0.017 Sum_probs=28.4
Q ss_pred CCEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEec
Q 021587 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (310)
Q Consensus 110 ~~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~ 148 (310)
.++|+|++.|.-.|.-++.++.+. +.+++.||+..
T Consensus 12 ~~~vlVa~SGGvDSs~ll~la~~~----g~~v~av~~~~ 46 (252)
T TIGR00268 12 FKKVLIAYSGGVDSSLLAAVCSDA----GTEVLAITVVS 46 (252)
T ss_pred cCCEEEEecCcHHHHHHHHHHHHh----CCCEEEEEecC
Confidence 468999999999999888877653 56788899853
No 28
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=87.47 E-value=4.4 Score=38.20 Aligned_cols=86 Identities=13% Similarity=0.073 Sum_probs=53.2
Q ss_pred CCHHHHHHHHHHHHHhcCCC-CEEEEEEEecCCCcCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 021587 119 KSQSSMDALSWTLRHAVNPS-TLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKV 197 (310)
Q Consensus 119 gSe~S~~AL~wAl~lA~~~g-a~L~LVHVi~~~~~ip~~~g~ip~~~~~~e~~e~~~~~~~e~a~elL~~~~~~~~~~gV 197 (310)
.++..++||+.|+++..+.+ .+|++|++=++.. ...+.|+++..+-...++
T Consensus 34 iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a----------------------------~~~~~lr~aLAmGaD~av 85 (256)
T PRK03359 34 ISQYDLNAIEAACQLKQQAAEAQVTALSVGGKAL----------------------------TNAKGRKDVLSRGPDELI 85 (256)
T ss_pred cChhhHHHHHHHHHHhhhcCCCEEEEEEECCcch----------------------------hhHHHHHHHHHcCCCEEE
Confidence 47889999999999887654 7999999865320 111333444333221122
Q ss_pred cEEEEEEEcC---ChHHHHHHHhccCCCCEEEECCCCC
Q 021587 198 MVDTVLIESD---LVAKAILDLIPVLNIRKLVVGTTKS 232 (310)
Q Consensus 198 ~ve~~vveG~---~~aeaIve~A~e~~aDLIVMGSrG~ 232 (310)
.+...-..|. ..+..|..++++.++|||+.|....
T Consensus 86 li~d~~~~g~D~~~tA~~La~ai~~~~~DLVl~G~~s~ 123 (256)
T PRK03359 86 VVIDDQFEQALPQQTASALAAAAQKAGFDLILCGDGSS 123 (256)
T ss_pred EEecCcccCcCHHHHHHHHHHHHHHhCCCEEEEcCccc
Confidence 2211111111 2467888999999999999998754
No 29
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=87.26 E-value=1.4 Score=41.61 Aligned_cols=83 Identities=12% Similarity=0.129 Sum_probs=55.8
Q ss_pred eecCCHHHHHHHHHHHHHhc-CCCCEEEEEEEecCCCcCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 021587 116 AVGKSQSSMDALSWTLRHAV-NPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQ 194 (310)
Q Consensus 116 AVDgSe~S~~AL~wAl~lA~-~~ga~L~LVHVi~~~~~ip~~~g~ip~~~~~~e~~e~~~~~~~e~a~elL~~~~~~~~~ 194 (310)
+..-++..+.|++.|+++.. ..+.+|++|++=++ .+++.|.++. .
T Consensus 32 ~~~in~~D~~AvEeAlrLke~~~~~eV~vlt~Gp~------------------------------~a~~~lr~aL----A 77 (260)
T COG2086 32 PLSINPFDLNAVEEALRLKEKGYGGEVTVLTMGPP------------------------------QAEEALREAL----A 77 (260)
T ss_pred CcccChhhHHHHHHHHHhhccCCCceEEEEEecch------------------------------hhHHHHHHHH----h
Confidence 33447889999999999988 58899999998543 2223333322 2
Q ss_pred CCCcEEEEEE----EcC---ChHHHHHHHhccCCCCEEEECCCCC
Q 021587 195 SKVMVDTVLI----ESD---LVAKAILDLIPVLNIRKLVVGTTKS 232 (310)
Q Consensus 195 ~gV~ve~~vv----eG~---~~aeaIve~A~e~~aDLIVMGSrG~ 232 (310)
.|+.--.++. .+. ..+.+|..++++.+.|||++|...-
T Consensus 78 mGaDraili~d~~~~~~d~~~ta~~Laa~~~~~~~~LVl~G~qa~ 122 (260)
T COG2086 78 MGADRAILITDRAFAGADPLATAKALAAAVKKIGPDLVLTGKQAI 122 (260)
T ss_pred cCCCeEEEEecccccCccHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 3443222222 121 3567888999999999999998743
No 30
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=85.65 E-value=5.2 Score=35.29 Aligned_cols=33 Identities=12% Similarity=0.060 Sum_probs=25.5
Q ss_pred EEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEec
Q 021587 113 IYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (310)
Q Consensus 113 ILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~ 148 (310)
|+|++-|...|.-++.++.+.. +.+++.||+..
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~---~~~v~~v~vd~ 33 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDAL---GDRVLAVTATS 33 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHh---CCcEEEEEeCC
Confidence 6899999999998888876653 23788888853
No 31
>PRK13820 argininosuccinate synthase; Provisional
Probab=83.87 E-value=8.8 Score=38.43 Aligned_cols=36 Identities=6% Similarity=-0.069 Sum_probs=29.1
Q ss_pred CCEEEEeecCCHHHHHHHHHHHHHhcCCCC-EEEEEEEec
Q 021587 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPST-LIFLIHVFP 148 (310)
Q Consensus 110 ~~kILVAVDgSe~S~~AL~wAl~lA~~~ga-~L~LVHVi~ 148 (310)
+++|+|++.|...|.-++.|+.+. .+. +|+.+|+-.
T Consensus 2 ~~kVvvA~SGGvDSsvll~lL~e~---~g~~~Viav~vd~ 38 (394)
T PRK13820 2 MKKVVLAYSGGLDTSVCVPLLKEK---YGYDEVITVTVDV 38 (394)
T ss_pred CCeEEEEEeCcHHHHHHHHHHHHh---cCCCEEEEEEEEC
Confidence 468999999999999999997543 354 899999963
No 32
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=82.87 E-value=21 Score=30.87 Aligned_cols=34 Identities=9% Similarity=-0.065 Sum_probs=28.1
Q ss_pred EEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEecC
Q 021587 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQ 149 (310)
Q Consensus 112 kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~~ 149 (310)
+|+|++-|...|.-++.++.+ .+.+++.||+-..
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~----~g~~v~av~~d~g 34 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMK----RGIEVDALHFNSG 34 (177)
T ss_pred CEEEEecCChhHHHHHHHHHH----cCCeEEEEEEeCC
Confidence 589999999999988888765 3788999999743
No 33
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=80.92 E-value=23 Score=34.85 Aligned_cols=36 Identities=11% Similarity=0.141 Sum_probs=29.5
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEec
Q 021587 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (310)
Q Consensus 109 ~~~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~ 148 (310)
...++||++-|.-.|.-|+.++.+ .|.+++.||+..
T Consensus 171 ~~~kvlvllSGGiDS~vaa~ll~k----rG~~V~av~~~~ 206 (371)
T TIGR00342 171 TQGKVLALLSGGIDSPVAAFMMMK----RGCRVVAVHFFN 206 (371)
T ss_pred cCCeEEEEecCCchHHHHHHHHHH----cCCeEEEEEEeC
Confidence 458999999999999988876644 478999999973
No 34
>PLN00200 argininosuccinate synthase; Provisional
Probab=80.26 E-value=24 Score=35.53 Aligned_cols=106 Identities=14% Similarity=0.226 Sum_probs=59.7
Q ss_pred CCEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEecCCCcCCCCCCCCCCCCCChhHHHHHHHHHHHH---------
Q 021587 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGK--------- 180 (310)
Q Consensus 110 ~~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~~~~~ip~~~g~ip~~~~~~e~~e~~~~~~~e~--------- 180 (310)
.+||+|++.|.-.|.-++.|+.+. .+.+|+.||+-.... .++++...+..++.
T Consensus 5 ~~kVvva~SGGlDSsvla~~L~e~---~G~eViav~id~Gq~---------------~~el~~a~~~A~~lGi~~~~v~d 66 (404)
T PLN00200 5 LNKVVLAYSGGLDTSVILKWLREN---YGCEVVCFTADVGQG---------------IEELEGLEAKAKASGAKQLVVKD 66 (404)
T ss_pred CCeEEEEEeCCHHHHHHHHHHHHh---hCCeEEEEEEECCCC---------------hHHHHHHHHHHHHcCCCEEEEEe
Confidence 369999999999999999988663 267899999863210 11222221111110
Q ss_pred H-HHHHHHHHHHhhcCCCcEEEEEEEcC-----ChHHHHHHHhccCCCCEEEECCCCCC
Q 021587 181 R-RQLLQKFLDTCSQSKVMVDTVLIESD-----LVAKAILDLIPVLNIRKLVVGTTKSS 233 (310)
Q Consensus 181 a-~elL~~~~~~~~~~gV~ve~~vveG~-----~~aeaIve~A~e~~aDLIVMGSrG~g 233 (310)
. +++.+.+..-|-..+..++.....+. -++..|+++|++.+++.|+=|+.++|
T Consensus 67 l~~ef~~~~i~p~i~~Na~ye~~Y~~~tsl~Rp~i~~~lv~~A~~~G~~~VahG~tgkG 125 (404)
T PLN00200 67 LREEFVRDYIFPCLRANAIYEGKYLLGTSMARPLIAKAMVDIAKEVGADAVAHGATGKG 125 (404)
T ss_pred CHHHHHHhhcCHHHHcCCcccceeccccchhhHHHHHHHHHHHHHcCCCEEEeCCcCCC
Confidence 0 11111221112112222221111111 35788899999999999999999864
No 35
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=80.00 E-value=12 Score=37.77 Aligned_cols=39 Identities=26% Similarity=0.232 Sum_probs=30.4
Q ss_pred CCEEEEeecCCHHHHHHHHHHHHHh-cCCCCEEEEEEEec
Q 021587 110 EDIIYVAVGKSQSSMDALSWTLRHA-VNPSTLIFLIHVFP 148 (310)
Q Consensus 110 ~~kILVAVDgSe~S~~AL~wAl~lA-~~~ga~L~LVHVi~ 148 (310)
.++|+||+-|...|...+....++. ...+-+++++||-.
T Consensus 15 ~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnh 54 (436)
T PRK10660 15 SRQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHH 54 (436)
T ss_pred CCeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeC
Confidence 4789999999999998777665543 23467999999963
No 36
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=79.60 E-value=12 Score=36.01 Aligned_cols=38 Identities=13% Similarity=-0.029 Sum_probs=30.0
Q ss_pred CEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEec
Q 021587 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (310)
Q Consensus 111 ~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~ 148 (310)
.+|+|++-|.+.|.-.|..|.+.+...+-.+.+||+-.
T Consensus 28 ~~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDT 65 (301)
T PRK05253 28 ENPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDT 65 (301)
T ss_pred CCEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeC
Confidence 57999999999999999888765543355788999864
No 37
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=79.35 E-value=19 Score=30.67 Aligned_cols=82 Identities=18% Similarity=0.112 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHHHhcCCCCEEEEEEEecCCCcCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcE
Q 021587 120 SQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVMV 199 (310)
Q Consensus 120 Se~S~~AL~wAl~lA~~~ga~L~LVHVi~~~~~ip~~~g~ip~~~~~~e~~e~~~~~~~e~a~elL~~~~~~~~~~gV~v 199 (310)
++.+.++|..|.+++...+.++++|.+=+.. ...+.|.+ .+...|+.-
T Consensus 14 ~~~~~e~l~~A~~La~~~g~~v~av~~G~~~-----------------------------~~~~~l~~---~l~~~G~d~ 61 (164)
T PF01012_consen 14 NPVSLEALEAARRLAEALGGEVTAVVLGPAE-----------------------------EAAEALRK---ALAKYGADK 61 (164)
T ss_dssp -HHHHHHHHHHHHHHHCTTSEEEEEEEETCC-----------------------------CHHHHHHH---HHHSTTESE
T ss_pred CHHHHHHHHHHHHHHhhcCCeEEEEEEecch-----------------------------hhHHHHhh---hhhhcCCcE
Confidence 5999999999999999889999999775211 01111112 222345432
Q ss_pred EEEEEEcC--------ChHHHHHHHhccCCCCEEEECCCCCCc
Q 021587 200 DTVLIESD--------LVAKAILDLIPVLNIRKLVVGTTKSSL 234 (310)
Q Consensus 200 e~~vveG~--------~~aeaIve~A~e~~aDLIVMGSrG~g~ 234 (310)
-.. +.+. ..++.|.+++++.++|+|++|....+.
T Consensus 62 v~~-~~~~~~~~~~~~~~a~~l~~~~~~~~~~lVl~~~t~~g~ 103 (164)
T PF01012_consen 62 VYH-IDDPALAEYDPEAYADALAELIKEEGPDLVLFGSTSFGR 103 (164)
T ss_dssp EEE-EE-GGGTTC-HHHHHHHHHHHHHHHT-SEEEEESSHHHH
T ss_pred EEE-ecCccccccCHHHHHHHHHHHHHhcCCCEEEEcCcCCCC
Confidence 222 2221 256688899999999999999875543
No 38
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=77.95 E-value=14 Score=37.94 Aligned_cols=115 Identities=17% Similarity=0.225 Sum_probs=70.1
Q ss_pred CEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEecCCCcCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 021587 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLD 190 (310)
Q Consensus 111 ~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~~~~~ip~~~g~ip~~~~~~e~~e~~~~~~~e~a~elL~~~~~ 190 (310)
..+||-++.|.-=...|.+| ...+-.+.++-|-..+ .. +.+++|+.+
T Consensus 360 gdviltyg~s~vV~~ill~A----~~~~k~frVvVVDSRP----~~-----------------------EG~~~lr~L-- 406 (556)
T KOG1467|consen 360 GDVLLTYGSSSVVNMILLEA----KELGKKFRVVVVDSRP----NL-----------------------EGRKLLRRL-- 406 (556)
T ss_pred CCEEEEecchHHHHHHHHHH----HHhCcceEEEEEeCCC----Cc-----------------------chHHHHHHH--
Confidence 36888899887555555554 4444555555553322 11 334445444
Q ss_pred HhhcCCCcEEEEEEEcCChHHHHHHHhccCCCCEEEECCCCC--CchhhhhcccCCCCcHHHHHHhhCCCCceEEEEcCC
Q 021587 191 TCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKS--SLRVLRKSKSGRISGMADHILQTAPETCEIKVVCEG 268 (310)
Q Consensus 191 ~~~~~gV~ve~~vveG~~~aeaIve~A~e~~aDLIVMGSrG~--g~~~l~r~~s~llGSVA~~Vl~~Ap~~CpVlVV~~~ 268 (310)
...|+.+...++.+ ..-|. ..++.|.+|.|.. ++.++.| .|.-...++.++.. .||+|+|+.
T Consensus 407 --v~~GinctYv~I~a---~syim-----~evtkvfLGahailsNG~vysR-----~GTa~valvAna~n-VPVlVCCE~ 470 (556)
T KOG1467|consen 407 --VDRGINCTYVLINA---ASYIM-----LEVTKVFLGAHAILSNGAVYSR-----VGTACVALVANAFN-VPVLVCCEA 470 (556)
T ss_pred --HHcCCCeEEEEehh---HHHHH-----HhcceeeechhhhhcCcchhhh-----cchHHHHHHhcccC-CCEEEEech
Confidence 34699999877743 23333 3579999999974 2212333 36656667777764 999999987
Q ss_pred cccccc
Q 021587 269 KEVIDQ 274 (310)
Q Consensus 269 k~v~~~ 274 (310)
.-...+
T Consensus 471 yKF~eR 476 (556)
T KOG1467|consen 471 YKFHER 476 (556)
T ss_pred hhhhhh
Confidence 644443
No 39
>PRK05370 argininosuccinate synthase; Validated
Probab=77.53 E-value=34 Score=34.93 Aligned_cols=106 Identities=10% Similarity=0.136 Sum_probs=63.3
Q ss_pred CCEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEecCCCcCCCCCCCCCCCCCChhHHHHHHHHHHH----------
Q 021587 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETG---------- 179 (310)
Q Consensus 110 ~~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~~~~~ip~~~g~ip~~~~~~e~~e~~~~~~~e---------- 179 (310)
.+||++|+.|.-.+--++.|-.+. +.+|+-++|-- |. ...++++.+.+++..
T Consensus 11 ~~KVvLAYSGGLDTSv~l~wL~e~----~~eVia~~aDv---------GQ-----~~~ed~~~i~~kA~~~GA~~~~viD 72 (447)
T PRK05370 11 GQRVGIAFSGGLDTSAALLWMRQK----GAVPYAYTANL---------GQ-----PDEDDYDAIPRRAMEYGAENARLID 72 (447)
T ss_pred CCEEEEEecCCchHHHHHHHHHhc----CCeEEEEEEEC---------CC-----CCccchHHHHHHHHHhCCCEEEEec
Confidence 479999999988888888887653 78888888842 11 001223333333221
Q ss_pred HHHHHHHHHHHHhhcCCCcE----EE-EE----EEcCChHHHHHHHhccCCCCEEEECCCCCCc
Q 021587 180 KRRQLLQKFLDTCSQSKVMV----DT-VL----IESDLVAKAILDLIPVLNIRKLVVGTTKSSL 234 (310)
Q Consensus 180 ~a~elL~~~~~~~~~~gV~v----e~-~v----veG~~~aeaIve~A~e~~aDLIVMGSrG~g~ 234 (310)
..+++.+.+. .+-..+.-. +. .. +.-.-+++.|+++|++.+++.|.=|+.|.|.
T Consensus 73 lr~eF~e~~i-~aI~anA~Y~~~~e~~Y~l~t~LaRplia~~lv~~A~~~ga~aIAHG~TGKGN 135 (447)
T PRK05370 73 CRAQLVAEGI-AAIQCGAFHISTGGVTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGN 135 (447)
T ss_pred cHHHHHHHHH-HHHHcCCccccccCccccCCCcchHHHHHHHHHHHHHHhCCcEEEEcCCCCCC
Confidence 1133444444 222223222 10 00 0012368899999999999999999999865
No 40
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=77.08 E-value=15 Score=31.43 Aligned_cols=33 Identities=12% Similarity=0.136 Sum_probs=25.8
Q ss_pred EEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEec
Q 021587 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (310)
Q Consensus 112 kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~ 148 (310)
||+|++-|...|.-++.++.+ .+.+++.+|+..
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~----~~~~v~~~~~~~ 33 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKK----EGYEVHALSFDY 33 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHH----cCCcEEEEEEEC
Confidence 589999999999988877754 245788888853
No 41
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=75.58 E-value=22 Score=27.91 Aligned_cols=33 Identities=15% Similarity=0.074 Sum_probs=25.5
Q ss_pred EEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEecC
Q 021587 113 IYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQ 149 (310)
Q Consensus 113 ILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~~ 149 (310)
|+|++-|...|.-.+.++.+.. .++.++|+-..
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~~----~~~~~~~~~~~ 33 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKLG----YQVIAVTVDHG 33 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHhC----CCEEEEEEcCC
Confidence 6899999999988888776542 27888988643
No 42
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=75.19 E-value=18 Score=29.95 Aligned_cols=36 Identities=14% Similarity=0.080 Sum_probs=26.4
Q ss_pred EEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEec
Q 021587 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (310)
Q Consensus 112 kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~ 148 (310)
+|+|++-|.+.|.-++..+.+..... ..+.++|+-.
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-~~~~~v~~dt 36 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-KPVPVIFLDT 36 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-cCceEEEeCC
Confidence 48999999999998888776654322 3677888753
No 43
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=75.12 E-value=29 Score=34.71 Aligned_cols=33 Identities=9% Similarity=0.068 Sum_probs=27.8
Q ss_pred EEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEec
Q 021587 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (310)
Q Consensus 112 kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~ 148 (310)
||+|++-|.-.|.-++.|+.+. +.+|+.||+-.
T Consensus 1 kVvla~SGGlDSsvll~~l~e~----g~~V~av~id~ 33 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLREK----GYEVIAYTADV 33 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHHHc----CCEEEEEEEec
Confidence 5899999999999999988653 67899999953
No 44
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=74.67 E-value=15 Score=31.29 Aligned_cols=113 Identities=11% Similarity=0.165 Sum_probs=59.2
Q ss_pred HhcCCCCEEEEEEEecCCCcCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEcCChHHH
Q 021587 133 HAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKA 212 (310)
Q Consensus 133 lA~~~ga~L~LVHVi~~~~~ip~~~g~ip~~~~~~e~~e~~~~~~~e~a~elL~~~~~~~~~~gV~ve~~vveG~~~aea 212 (310)
.|.+.+..|+.|.|+++....+. . ..... ..-..+-|..+.+.+.+.|+. -.++.|+ +.+.
T Consensus 19 ~A~~~~~~v~~vfv~d~~~~~~~---~-----~~~~r--------~~Fl~~sL~~L~~~L~~~g~~--L~v~~g~-~~~~ 79 (165)
T PF00875_consen 19 AAAQNGDPVLPVFVFDPEEFHPY---R-----IGPRR--------RRFLLESLADLQESLRKLGIP--LLVLRGD-PEEV 79 (165)
T ss_dssp HHHHTTSEEEEEEEE-HHGGTTC---S-----SCHHH--------HHHHHHHHHHHHHHHHHTTS---EEEEESS-HHHH
T ss_pred HHHHcCCCeEEEEEecccccccc---c-----CcchH--------HHHHHHHHHHHHHHHHhcCcc--eEEEecc-hHHH
Confidence 33445788999999987521110 0 01111 122334455555556665654 4466676 5899
Q ss_pred HHHHhccCCCCEEEECCCCC-CchhhhhcccCCCCcHHHHHHhhCCCCceEEEEcCCcccccc
Q 021587 213 ILDLIPVLNIRKLVVGTTKS-SLRVLRKSKSGRISGMADHILQTAPETCEIKVVCEGKEVIDQ 274 (310)
Q Consensus 213 Ive~A~e~~aDLIVMGSrG~-g~~~l~r~~s~llGSVA~~Vl~~Ap~~CpVlVV~~~k~v~~~ 274 (310)
|.+++++++++.|+.-..-. .. .++- -.+.. .+.... |.+..+.....+-..
T Consensus 80 l~~l~~~~~~~~V~~~~~~~~~~--~~rd-----~~v~~-~l~~~~--i~~~~~~~~~L~~~~ 132 (165)
T PF00875_consen 80 LPELAKEYGATAVYFNEEYTPYE--RRRD-----ERVRK-ALKKHG--IKVHTFDDHTLVPPD 132 (165)
T ss_dssp HHHHHHHHTESEEEEE---SHHH--HHHH-----HHHHH-HHHHTT--SEEEEE--SSSS-HH
T ss_pred HHHHHHhcCcCeeEeccccCHHH--HHHH-----HHHHH-HHHhcc--eEEEEECCcEEEecc
Confidence 99999999999999876532 22 1221 12233 333333 788777766655443
No 45
>TIGR00591 phr2 photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=73.77 E-value=28 Score=34.97 Aligned_cols=91 Identities=8% Similarity=0.005 Sum_probs=58.7
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCEEEEEEEecCCCcCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 021587 118 GKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKV 197 (310)
Q Consensus 118 DgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~~~~~ip~~~g~ip~~~~~~e~~e~~~~~~~e~a~elL~~~~~~~~~~gV 197 (310)
|.--.-..||..|++.+...+..|+.|.++++.... .+ . ....=..+-|..+.+.+++.|+
T Consensus 32 DLRl~DN~aL~~A~~~a~~~~~~vl~vyi~dp~~~~---~~--------~--------~r~~Fl~esL~~L~~~L~~~g~ 92 (454)
T TIGR00591 32 DQRVQDNWALIAAQTLALKKKLPLHVCFCLVDFFLA---AT--------R--------RHYFFMLGGLDEVANECERLII 92 (454)
T ss_pred chhccCCHHHHHHHHHHHHcCCCEEEEEEeCCCccc---cc--------H--------HHHHHHHHHHHHHHHHHHHcCC
Confidence 665555668888877665556789999999764210 01 0 0112233445555555665565
Q ss_pred cEEEEEEEcCChHHHHHHHhccCCCCEEEECCC
Q 021587 198 MVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT 230 (310)
Q Consensus 198 ~ve~~vveG~~~aeaIve~A~e~~aDLIVMGSr 230 (310)
.. ++..|. +.+.|.+++++++|+.|+.-..
T Consensus 93 ~L--~v~~g~-~~~~l~~l~~~~~i~~V~~~~~ 122 (454)
T TIGR00591 93 PF--HLLDGP-PKELLPYFVDLHAAAAVVTDFS 122 (454)
T ss_pred ce--EEeecC-hHHHHHHHHHHcCCCEEEEecc
Confidence 54 355665 4899999999999999999775
No 46
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=71.54 E-value=31 Score=34.07 Aligned_cols=34 Identities=9% Similarity=-0.012 Sum_probs=27.2
Q ss_pred CCEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEe
Q 021587 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVF 147 (310)
Q Consensus 110 ~~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi 147 (310)
.++|+|++.|.-.|.-++.++.+ .+.+++.||+.
T Consensus 5 ~~kVlValSGGVDSsvaa~LL~~----~G~~V~~v~~~ 38 (360)
T PRK14665 5 NKRVLLGMSGGTDSSVAAMLLLE----AGYEVTGVTFR 38 (360)
T ss_pred CCEEEEEEcCCHHHHHHHHHHHH----cCCeEEEEEEe
Confidence 46899999999999887776654 36788888885
No 47
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=70.66 E-value=35 Score=29.60 Aligned_cols=25 Identities=28% Similarity=0.255 Sum_probs=21.2
Q ss_pred HHHHHHHhccCCCCEEEECCCCCCc
Q 021587 210 AKAILDLIPVLNIRKLVVGTTKSSL 234 (310)
Q Consensus 210 aeaIve~A~e~~aDLIVMGSrG~g~ 234 (310)
++.|.+++++.++|+|++|....+.
T Consensus 80 a~~l~~~i~~~~p~~Vl~g~t~~g~ 104 (181)
T cd01985 80 AKALAALIKKEKPDLILAGATSIGK 104 (181)
T ss_pred HHHHHHHHHHhCCCEEEECCccccc
Confidence 5788899899999999999986643
No 48
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=70.38 E-value=38 Score=28.27 Aligned_cols=33 Identities=15% Similarity=-0.035 Sum_probs=24.9
Q ss_pred EEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEe
Q 021587 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVF 147 (310)
Q Consensus 112 kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi 147 (310)
.|+|++-|...|.-++.++.+.. +-++..+|+-
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~~~---~~~v~~v~~~ 35 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKEKY---GLNPLAVTVD 35 (154)
T ss_pred CEEEECCCchhHHHHHHHHHHHh---CCceEEEEeC
Confidence 48999999999998888876543 2267777774
No 49
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=69.30 E-value=41 Score=31.99 Aligned_cols=89 Identities=11% Similarity=0.081 Sum_probs=54.5
Q ss_pred CEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEecCCCcCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 021587 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLD 190 (310)
Q Consensus 111 ~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~~~~~ip~~~g~ip~~~~~~e~~e~~~~~~~e~a~elL~~~~~ 190 (310)
.+|+||.-|.-.|--.+..|.+.+ |..+..|.|..|. +| ..++ +.+..
T Consensus 18 ~kv~vAfSGGvDSslLa~la~~~l---G~~v~AvTv~sP~---------~p-----~~e~---------------e~A~~ 65 (269)
T COG1606 18 KKVVVAFSGGVDSSLLAKLAKEAL---GDNVVAVTVDSPY---------IP-----RREI---------------EEAKN 65 (269)
T ss_pred CeEEEEecCCccHHHHHHHHHHHh---ccceEEEEEecCC---------CC-----hhhh---------------hHHHH
Confidence 489999999877776666665544 5788888887642 11 0111 11112
Q ss_pred HhhcCCCcEE------------------EEEEEcCChHHHHHHHhccCCCCEEEECCCCC
Q 021587 191 TCSQSKVMVD------------------TVLIESDLVAKAILDLIPVLNIRKLVVGTTKS 232 (310)
Q Consensus 191 ~~~~~gV~ve------------------~~vveG~~~aeaIve~A~e~~aDLIVMGSrG~ 232 (310)
.+++-|++-+ +.+. -..+.+.|++.|.+.++|.|+=|+...
T Consensus 66 ~A~~iGi~H~~i~~~~~~~~~~~n~~~rCY~C-K~~v~~~l~~~a~~~Gyd~V~dGtNas 124 (269)
T COG1606 66 IAKEIGIRHEFIKMNRMDPEFKENPENRCYLC-KRAVYSTLVEEAEKRGYDVVADGTNAS 124 (269)
T ss_pred HHHHhCCcceeeehhhcchhhccCCCCcchHH-HHHHHHHHHHHHHHcCCCEEEeCCcHH
Confidence 2222232211 1111 124678999999999999999998743
No 50
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=69.05 E-value=89 Score=31.45 Aligned_cols=107 Identities=12% Similarity=0.213 Sum_probs=66.8
Q ss_pred CCEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEecCCCcCCCCCCCCCCCCCChhHHHHHHHHHHHH---------
Q 021587 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGK--------- 180 (310)
Q Consensus 110 ~~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~~~~~ip~~~g~ip~~~~~~e~~e~~~~~~~e~--------- 180 (310)
.+||++|+-|.-..--+|.|-.+.. +.+|+-+.+- .|. ..++++.+.+++.+.
T Consensus 4 ~kkvvLAYSGGLDTSv~i~wL~e~~---~~eVia~tad---------vGQ------~eed~~~i~eKA~~~Ga~~~~viD 65 (403)
T COG0137 4 VKKVVLAYSGGLDTSVAIKWLKEKG---GAEVIAVTAD---------VGQ------PEEDLDAIREKALELGAEEAYVID 65 (403)
T ss_pred CcEEEEEecCCccHHHHHHHHHHhc---CceEEEEEEe---------CCC------ChHHhHHHHHHHHHhCCceEEEee
Confidence 4799999999877777888876544 4666666553 121 024445554444321
Q ss_pred -HHHHHHHHHHHhhcCCCcEEEEEEEcC-----ChHHHHHHHhccCCCCEEEECCCCCCc
Q 021587 181 -RRQLLQKFLDTCSQSKVMVDTVLIESD-----LVAKAILDLIPVLNIRKLVVGTTKSSL 234 (310)
Q Consensus 181 -a~elL~~~~~~~~~~gV~ve~~vveG~-----~~aeaIve~A~e~~aDLIVMGSrG~g~ 234 (310)
.+++.+.+.-.+...+..++..-.-|. -+++.++++|++.+++.|-=|+.|.|.
T Consensus 66 ~reeF~~~yi~~~i~ana~Yeg~YpL~TalaRPLIak~lVe~A~k~ga~avaHGcTGKGN 125 (403)
T COG0137 66 AREEFVEDYIFPAIKANALYEGVYPLGTALARPLIAKKLVEAAKKEGADAVAHGCTGKGN 125 (403)
T ss_pred cHHHHHHHHHHHHHHhhceeeccccccchhhHHHHHHHHHHHHHHcCCCEEEecCCCCCC
Confidence 234444554444444444443211122 267899999999999999999999975
No 51
>PRK00509 argininosuccinate synthase; Provisional
Probab=66.05 E-value=51 Score=33.16 Aligned_cols=35 Identities=6% Similarity=0.046 Sum_probs=29.3
Q ss_pred CEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEec
Q 021587 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (310)
Q Consensus 111 ~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~ 148 (310)
++|+|++.|.-.|--++.|+.+.. +.+|+.||+--
T Consensus 3 ~kVvva~SGGlDSsvla~~l~e~l---G~eViavt~d~ 37 (399)
T PRK00509 3 KKVVLAYSGGLDTSVIIKWLKETY---GCEVIAFTADV 37 (399)
T ss_pred CeEEEEEcCCHHHHHHHHHHHHhh---CCeEEEEEEec
Confidence 689999999999999999987643 67899999863
No 52
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=65.53 E-value=44 Score=33.98 Aligned_cols=84 Identities=12% Similarity=0.106 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhcCCCCEEEEEEEecCCCcCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEE
Q 021587 124 MDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVL 203 (310)
Q Consensus 124 ~~AL~wAl~lA~~~ga~L~LVHVi~~~~~ip~~~g~ip~~~~~~e~~e~~~~~~~e~a~elL~~~~~~~~~~gV~ve~~v 203 (310)
..||..|++ .+.+|+.|.|+++...... . .... + ..=.-+-|..+.+.+.+.|+.. ++
T Consensus 16 N~AL~~A~~----~~~~vl~vfi~dp~~~~~~---~-----~~~~-----r---~~Fl~esL~~L~~~L~~~G~~L--~v 73 (471)
T TIGR03556 16 NIGLAAARQ----QSAKVVGLFCLDPNILQAD---D-----MAPA-----R---VAYLIGCLQELQQRYQQAGSQL--LI 73 (471)
T ss_pred HHHHHHHHh----cCCCEEEEEEEchhhhccc---c-----CCHH-----H---HHHHHHHHHHHHHHHHHCCCCe--EE
Confidence 345555543 4567999999876421000 0 0000 0 1123344455555566666655 45
Q ss_pred EEcCChHHHHHHHhccCCCCEEEECCC
Q 021587 204 IESDLVAKAILDLIPVLNIRKLVVGTT 230 (310)
Q Consensus 204 veG~~~aeaIve~A~e~~aDLIVMGSr 230 (310)
..|. +.+.|.+++++++++.|+.-..
T Consensus 74 ~~G~-p~~vl~~l~~~~~~~~V~~~~~ 99 (471)
T TIGR03556 74 LQGD-PVQLIPQLAQQLGAKAVYWNLD 99 (471)
T ss_pred EECC-HHHHHHHHHHHcCCCEEEEecc
Confidence 5675 5899999999999999997665
No 53
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=64.35 E-value=94 Score=27.74 Aligned_cols=34 Identities=12% Similarity=0.094 Sum_probs=26.4
Q ss_pred EEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEecC
Q 021587 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQ 149 (310)
Q Consensus 112 kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~~ 149 (310)
|++|++-|.+.|.-|+.+|.+ .+.+++.|++..+
T Consensus 1 kv~v~~SGGkDS~~al~~a~~----~G~~v~~l~~~~~ 34 (194)
T cd01994 1 KVVALISGGKDSCYALYRALE----EGHEVVALLNLTP 34 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHH----cCCEEEEEEEEec
Confidence 578999999999999988876 3567777776543
No 54
>PRK00919 GMP synthase subunit B; Validated
Probab=63.26 E-value=72 Score=30.85 Aligned_cols=35 Identities=14% Similarity=-0.013 Sum_probs=28.9
Q ss_pred CEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEec
Q 021587 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (310)
Q Consensus 111 ~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~ 148 (310)
++|+|++-|.-.|--++.++.+. .+.+++.||+-.
T Consensus 22 ~kVlVa~SGGVDSsvla~la~~~---lG~~v~aV~vD~ 56 (307)
T PRK00919 22 GKAIIALSGGVDSSVAAVLAHRA---IGDRLTPVFVDT 56 (307)
T ss_pred CCEEEEecCCHHHHHHHHHHHHH---hCCeEEEEEEEC
Confidence 68999999999999888877653 367899999974
No 55
>PRK08349 hypothetical protein; Validated
Probab=61.38 E-value=60 Score=28.71 Aligned_cols=34 Identities=15% Similarity=0.092 Sum_probs=27.1
Q ss_pred CEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEec
Q 021587 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (310)
Q Consensus 111 ~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~ 148 (310)
+++||++-|...|.-++.++.+ .+.+|+.||+-.
T Consensus 1 ~~~vvllSGG~DS~v~~~~l~~----~g~~v~av~~d~ 34 (198)
T PRK08349 1 MKAVALLSSGIDSPVAIYLMLR----RGVEVYPVHFRQ 34 (198)
T ss_pred CcEEEEccCChhHHHHHHHHHH----cCCeEEEEEEeC
Confidence 3789999999999988865543 477999999963
No 56
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=60.72 E-value=68 Score=30.98 Aligned_cols=35 Identities=14% Similarity=0.034 Sum_probs=28.0
Q ss_pred CEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEec
Q 021587 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (310)
Q Consensus 111 ~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~ 148 (310)
++|+|++-|...|.-++.++.+.. +.+++.|||-.
T Consensus 17 ~kVvValSGGVDSsvla~ll~~~~---G~~v~av~vd~ 51 (311)
T TIGR00884 17 AKVIIALSGGVDSSVAAVLAHRAI---GDRLTCVFVDH 51 (311)
T ss_pred CcEEEEecCChHHHHHHHHHHHHh---CCCEEEEEEeC
Confidence 689999999999988887775532 56899999964
No 57
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=60.07 E-value=49 Score=32.91 Aligned_cols=48 Identities=10% Similarity=0.137 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhhcCCCcEEEEEEEcCChHHHHHHHhccCCCCEEEECCCC
Q 021587 181 RRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTK 231 (310)
Q Consensus 181 a~elL~~~~~~~~~~gV~ve~~vveG~~~aeaIve~A~e~~aDLIVMGSrG 231 (310)
..+-|.++.+.+++.|+.. ++..|. +.+.|.+++++++|+.|+.-..-
T Consensus 59 l~esL~~L~~~L~~~g~~L--~v~~G~-~~~vl~~L~~~~~~~~V~~~~~~ 106 (429)
T TIGR02765 59 LLESLKDLRTSLRKLGSDL--LVRSGK-PEDVLPELIKELGVRTVFLHQEV 106 (429)
T ss_pred HHHHHHHHHHHHHHcCCCe--EEEeCC-HHHHHHHHHHHhCCCEEEEeccC
Confidence 3344555555666656654 455675 48999999999999999988663
No 58
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=59.82 E-value=34 Score=27.49 Aligned_cols=50 Identities=14% Similarity=0.155 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhhcCCCcEEEEEEE-----------cCChHHHHHHHhccCCCCEEEECCC
Q 021587 181 RRQLLQKFLDTCSQSKVMVDTVLIE-----------SDLVAKAILDLIPVLNIRKLVVGTT 230 (310)
Q Consensus 181 a~elL~~~~~~~~~~gV~ve~~vve-----------G~~~aeaIve~A~e~~aDLIVMGSr 230 (310)
.++.|+++...++..|+.+...++. |.--.++|.++++.+++|+||.-..
T Consensus 6 ~~~~l~El~~L~~t~g~~vv~~~~q~~~~~~p~~~iG~GK~eei~~~~~~~~~d~vvfd~~ 66 (95)
T PF13167_consen 6 FEESLEELEELAETAGYEVVGTVVQKRRKPDPKTYIGSGKVEEIKELIEELDADLVVFDNE 66 (95)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEEecCCCCCcceeechhHHHHHHHHHhhcCCCEEEECCC
Confidence 4556677777777777766543332 3334789999999999999999864
No 59
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=59.65 E-value=51 Score=28.91 Aligned_cols=68 Identities=12% Similarity=0.150 Sum_probs=42.1
Q ss_pred HHHHHHhhcCCCcEEEEEEEcCChHHHHHHHh---ccCCCCEEEECCCCCCchhhhhcccCCCCcHHHHHHhhCCCCceE
Q 021587 186 QKFLDTCSQSKVMVDTVLIESDLVAKAILDLI---PVLNIRKLVVGTTKSSLRVLRKSKSGRISGMADHILQTAPETCEI 262 (310)
Q Consensus 186 ~~~~~~~~~~gV~ve~~vveG~~~aeaIve~A---~e~~aDLIVMGSrG~g~~~l~r~~s~llGSVA~~Vl~~Ap~~CpV 262 (310)
+++...++..|+.++..+.--..-.+.+.+++ ++.+++.||.++-+.+. + +.-|..+.+ .||
T Consensus 15 ~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~--L-----------pgvva~~t~--~PV 79 (156)
T TIGR01162 15 KKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAH--L-----------PGMVAALTP--LPV 79 (156)
T ss_pred HHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccch--h-----------HHHHHhccC--CCE
Confidence 44445556668888887774433235555554 55678888888766554 2 223444555 899
Q ss_pred EEEcCC
Q 021587 263 KVVCEG 268 (310)
Q Consensus 263 lVV~~~ 268 (310)
+-||-.
T Consensus 80 IgvP~~ 85 (156)
T TIGR01162 80 IGVPVP 85 (156)
T ss_pred EEecCC
Confidence 888863
No 60
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=59.49 E-value=84 Score=30.67 Aligned_cols=34 Identities=9% Similarity=-0.046 Sum_probs=25.8
Q ss_pred CEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEec
Q 021587 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (310)
Q Consensus 111 ~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~ 148 (310)
++|+|++-|...|.-++..+.+ .+-+|+.+|+..
T Consensus 1 ~kVlValSGGvDSsvla~lL~~----~G~~V~~v~~~~ 34 (346)
T PRK00143 1 KRVVVGMSGGVDSSVAAALLKE----QGYEVIGVFMKL 34 (346)
T ss_pred CeEEEEecCCHHHHHHHHHHHH----cCCcEEEEEEeC
Confidence 4899999999988877755543 356788888864
No 61
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=58.61 E-value=6.9 Score=31.78 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=19.7
Q ss_pred HHHHHHHhccCCCCEEEECCC
Q 021587 210 AKAILDLIPVLNIRKLVVGTT 230 (310)
Q Consensus 210 aeaIve~A~e~~aDLIVMGSr 230 (310)
.+.|+++|+++++||+|+|.-
T Consensus 51 ~~~l~~~a~~~~idlvvvGPE 71 (100)
T PF02844_consen 51 PEELADFAKENKIDLVVVGPE 71 (100)
T ss_dssp HHHHHHHHHHTTESEEEESSH
T ss_pred HHHHHHHHHHcCCCEEEECCh
Confidence 689999999999999999985
No 62
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=58.34 E-value=1.2e+02 Score=28.09 Aligned_cols=42 Identities=7% Similarity=0.094 Sum_probs=25.2
Q ss_pred HHHHHhhcCCCcEEEEEEEcCChHHHHHHHhccCCCCEEEECCC
Q 021587 187 KFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT 230 (310)
Q Consensus 187 ~~~~~~~~~gV~ve~~vveG~~~aeaIve~A~e~~aDLIVMGSr 230 (310)
++++...+.+..+.. -+.|+ +...-+..+.+.+||.+|+|+.
T Consensus 158 ~lr~~~~~~~~~~~I-eVDGG-I~~~~i~~~~~aGad~~V~Gss 199 (229)
T PRK09722 158 ELKALRERNGLEYLI-EVDGS-CNQKTYEKLMEAGADVFIVGTS 199 (229)
T ss_pred HHHHHHHhcCCCeEE-EEECC-CCHHHHHHHHHcCCCEEEEChH
Confidence 333344445555442 34565 3555555556679999999975
No 63
>PRK14057 epimerase; Provisional
Probab=57.47 E-value=1.4e+02 Score=28.22 Aligned_cols=40 Identities=15% Similarity=0.210 Sum_probs=24.1
Q ss_pred HHHhhcCCCcEEEEEEEcCChHHHHHHHhccCCCCEEEECCC
Q 021587 189 LDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT 230 (310)
Q Consensus 189 ~~~~~~~gV~ve~~vveG~~~aeaIve~A~e~~aDLIVMGSr 230 (310)
++...+.+..+. .-+.|+ +...-+..+.+.++|.+|+|+.
T Consensus 184 r~~~~~~~~~~~-IeVDGG-I~~~ti~~l~~aGad~~V~GSa 223 (254)
T PRK14057 184 LCLLGDKREGKI-IVIDGS-LTQDQLPSLIAQGIDRVVSGSA 223 (254)
T ss_pred HHHHHhcCCCce-EEEECC-CCHHHHHHHHHCCCCEEEEChH
Confidence 333334455444 234565 3555555566679999999975
No 64
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=57.44 E-value=1.1e+02 Score=27.33 Aligned_cols=32 Identities=13% Similarity=0.003 Sum_probs=23.4
Q ss_pred EeecCCHHHHHHHHHHHHHhcCCCCEEEEEEE
Q 021587 115 VAVGKSQSSMDALSWTLRHAVNPSTLIFLIHV 146 (310)
Q Consensus 115 VAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHV 146 (310)
++.-.++.+..+|..|+.++...+.++.+|.+
T Consensus 29 ~~~vi~e~~~~~l~ea~~la~~~g~~v~av~~ 60 (202)
T cd01714 29 VPLIINPYDEYAVEEALRLKEKYGGEVTVVSM 60 (202)
T ss_pred CCccCChHhHHHHHHHHHhhhhcCCEEEEEEE
Confidence 45556788899999999887666667666554
No 65
>PRK04527 argininosuccinate synthase; Provisional
Probab=57.32 E-value=97 Score=31.22 Aligned_cols=34 Identities=6% Similarity=0.004 Sum_probs=27.7
Q ss_pred CEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEec
Q 021587 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (310)
Q Consensus 111 ~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~ 148 (310)
++|+|++-|.-.|--++.|+.+ .+.+++.|++-.
T Consensus 3 ~kVvVA~SGGvDSSvla~~l~e----~G~~Viavt~d~ 36 (400)
T PRK04527 3 KDIVLAFSGGLDTSFCIPYLQE----RGYAVHTVFADT 36 (400)
T ss_pred CcEEEEEcCChHHHHHHHHHHH----cCCcEEEEEEEe
Confidence 5899999999888888888765 266888888853
No 66
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=56.79 E-value=75 Score=29.24 Aligned_cols=39 Identities=13% Similarity=0.169 Sum_probs=23.7
Q ss_pred HHhhcCCCcEEEEEEEcCChHHHHHHHhccCCCCEEEECCC
Q 021587 190 DTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT 230 (310)
Q Consensus 190 ~~~~~~gV~ve~~vveG~~~aeaIve~A~e~~aDLIVMGSr 230 (310)
+...+.+..+. .-+.|+ +...-+....+.++|.+|+|+.
T Consensus 163 ~~~~~~~~~~~-IeVDGG-I~~eti~~l~~aGaDi~V~GSa 201 (223)
T PRK08745 163 KKIDALGKPIR-LEIDGG-VKADNIGAIAAAGADTFVAGSA 201 (223)
T ss_pred HHHHhcCCCee-EEEECC-CCHHHHHHHHHcCCCEEEEChh
Confidence 33333444433 234465 4555665666779999999975
No 67
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=56.32 E-value=67 Score=33.05 Aligned_cols=36 Identities=11% Similarity=0.137 Sum_probs=28.3
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEE
Q 021587 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIH 145 (310)
Q Consensus 109 ~~~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVH 145 (310)
..++||++|-||-.+.++++++-.+. +.+.+|+++-
T Consensus 69 ~~k~IllgVtGsIAayka~~lvr~L~-k~G~~V~Vvm 104 (475)
T PRK13982 69 ASKRVTLIIGGGIAAYKALDLIRRLK-ERGAHVRCVL 104 (475)
T ss_pred CCCEEEEEEccHHHHHHHHHHHHHHH-hCcCEEEEEE
Confidence 45899999999999999999987664 4677655443
No 68
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=56.28 E-value=74 Score=30.54 Aligned_cols=34 Identities=12% Similarity=-0.021 Sum_probs=26.5
Q ss_pred EEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEec
Q 021587 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (310)
Q Consensus 112 kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~ 148 (310)
+|+|++-|.-.|.-++.++.+. .+.+++.||+-.
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~---lG~~v~aV~vd~ 34 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKA---IGDRLTCVFVDN 34 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHH---hCCcEEEEEecC
Confidence 5899999999998888776553 356799999954
No 69
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=55.56 E-value=1.3e+02 Score=28.02 Aligned_cols=39 Identities=13% Similarity=0.200 Sum_probs=24.3
Q ss_pred HHhhcCCCcEEEEEEEcCChHHHHHHHhccCCCCEEEECCC
Q 021587 190 DTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT 230 (310)
Q Consensus 190 ~~~~~~gV~ve~~vveG~~~aeaIve~A~e~~aDLIVMGSr 230 (310)
+...+++.++. .-+.|+ +...-+..+.+.++|.+|+|+.
T Consensus 171 ~~~~~~~~~~~-IeVDGG-I~~~ti~~l~~aGaD~~V~GSa 209 (228)
T PRK08091 171 NRLGNRRVEKL-ISIDGS-MTLELASYLKQHQIDWVVSGSA 209 (228)
T ss_pred HHHHhcCCCce-EEEECC-CCHHHHHHHHHCCCCEEEEChh
Confidence 33334455544 334565 3555565666789999999975
No 70
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=55.42 E-value=14 Score=29.98 Aligned_cols=52 Identities=29% Similarity=0.331 Sum_probs=37.5
Q ss_pred hHHHHHHHhccCCCCEEEECCCCCCchhhhhcccCCCCcHHHHHHhhCCCCceEEEEcCCccccccc
Q 021587 209 VAKAILDLIPVLNIRKLVVGTTKSSLRVLRKSKSGRISGMADHILQTAPETCEIKVVCEGKEVIDQM 275 (310)
Q Consensus 209 ~aeaIve~A~e~~aDLIVMGSrG~g~~~l~r~~s~llGSVA~~Vl~~Ap~~CpVlVV~~~k~v~~~~ 275 (310)
++...++.|++.+++.||+=++. |.++..+.+.-| .|||+++.+...+..+.
T Consensus 4 ia~aa~~~A~~~~ak~Ivv~T~s--------------G~ta~~isk~RP-~~pIiavt~~~~~~r~l 55 (117)
T PF02887_consen 4 IARAAVELAEDLNAKAIVVFTES--------------GRTARLISKYRP-KVPIIAVTPNESVARQL 55 (117)
T ss_dssp HHHHHHHHHHHHTESEEEEE-SS--------------SHHHHHHHHT-T-SSEEEEEESSHHHHHHG
T ss_pred HHHHHHHHHHhcCCCEEEEECCC--------------chHHHHHHhhCC-CCeEEEEcCcHHHHhhh
Confidence 56778899999999999987752 334566666666 49999999888765553
No 71
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=53.61 E-value=66 Score=28.38 Aligned_cols=68 Identities=7% Similarity=0.087 Sum_probs=43.3
Q ss_pred HHHHHHhhcCCCcEEEEEEEcCChHHHHHHH---hccCCCCEEEECCCCCCchhhhhcccCCCCcHHHHHHhhCCCCceE
Q 021587 186 QKFLDTCSQSKVMVDTVLIESDLVAKAILDL---IPVLNIRKLVVGTTKSSLRVLRKSKSGRISGMADHILQTAPETCEI 262 (310)
Q Consensus 186 ~~~~~~~~~~gV~ve~~vveG~~~aeaIve~---A~e~~aDLIVMGSrG~g~~~l~r~~s~llGSVA~~Vl~~Ap~~CpV 262 (310)
+++.+.+++.|+.++..++....--+.+.+| |++.+++.||-|+-|.-- +=|-| ....+ -||
T Consensus 19 k~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAH---------LPGmv----Aa~T~--lPV 83 (162)
T COG0041 19 KKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAH---------LPGMV----AAKTP--LPV 83 (162)
T ss_pred HHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhh---------cchhh----hhcCC--CCe
Confidence 3444555566999998888655434555555 567789999999877432 12323 33344 788
Q ss_pred EEEcCC
Q 021587 263 KVVCEG 268 (310)
Q Consensus 263 lVV~~~ 268 (310)
+=||-.
T Consensus 84 iGVPv~ 89 (162)
T COG0041 84 IGVPVQ 89 (162)
T ss_pred EeccCc
Confidence 888754
No 72
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=53.50 E-value=1e+02 Score=29.66 Aligned_cols=38 Identities=13% Similarity=-0.027 Sum_probs=29.3
Q ss_pred CEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEec
Q 021587 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (310)
Q Consensus 111 ~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~ 148 (310)
.++++++-|.+.|.-+|..|.+.+...+-.+.+||+-.
T Consensus 20 ~~~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDT 57 (294)
T TIGR02039 20 ERPVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDT 57 (294)
T ss_pred CCcEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEec
Confidence 45678899999999999888776543356789999953
No 73
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=53.45 E-value=85 Score=31.46 Aligned_cols=37 Identities=5% Similarity=-0.001 Sum_probs=25.8
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEecC
Q 021587 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQ 149 (310)
Q Consensus 109 ~~~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~~ 149 (310)
...++|+=+-|.-.|- -|..++.++|.+++.||...+
T Consensus 174 t~Gk~l~LlSGGIDSP----VA~~l~mkRG~~v~~v~f~~~ 210 (383)
T COG0301 174 TQGKVLLLLSGGIDSP----VAAWLMMKRGVEVIPVHFGNP 210 (383)
T ss_pred cCCcEEEEEeCCCChH----HHHHHHHhcCCEEEEEEEcCC
Confidence 3456777776654444 355567779999999999754
No 74
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=53.29 E-value=49 Score=28.80 Aligned_cols=68 Identities=7% Similarity=0.048 Sum_probs=37.3
Q ss_pred HHHHHHhhcCCCcEEEEEEEcCChHHHHHHHhcc---CCCCEEEECCCCCCchhhhhcccCCCCcHHHHHHhhCCCCceE
Q 021587 186 QKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPV---LNIRKLVVGTTKSSLRVLRKSKSGRISGMADHILQTAPETCEI 262 (310)
Q Consensus 186 ~~~~~~~~~~gV~ve~~vveG~~~aeaIve~A~e---~~aDLIVMGSrG~g~~~l~r~~s~llGSVA~~Vl~~Ap~~CpV 262 (310)
+++...+++.|+.++..+.-...-.+.+.+++++ .+++.+|.++-..+. | +.-|..... +||
T Consensus 17 ~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~--L-----------pgvva~~t~--~PV 81 (150)
T PF00731_consen 17 EEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMSAA--L-----------PGVVASLTT--LPV 81 (150)
T ss_dssp HHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS----H-----------HHHHHHHSS--S-E
T ss_pred HHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCccc--c-----------hhhheeccC--CCE
Confidence 3444455556788887777544334666666554 467877776654444 2 333555565 899
Q ss_pred EEEcCC
Q 021587 263 KVVCEG 268 (310)
Q Consensus 263 lVV~~~ 268 (310)
+-||-.
T Consensus 82 IgvP~~ 87 (150)
T PF00731_consen 82 IGVPVS 87 (150)
T ss_dssp EEEEE-
T ss_pred EEeecC
Confidence 988744
No 75
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=49.29 E-value=1.8e+02 Score=26.75 Aligned_cols=92 Identities=14% Similarity=0.124 Sum_probs=52.7
Q ss_pred EEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEecCCCcCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 021587 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDT 191 (310)
Q Consensus 112 kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~~~~~ip~~~g~ip~~~~~~e~~e~~~~~~~e~a~elL~~~~~~ 191 (310)
|+++..-|.+.|.-|+-+|++. ...+.|+++++...- ..... ..+. + .+...
T Consensus 2 kv~vl~SGGKDS~lAl~~~~~~----~~V~~L~~~~~~~~~-----s~~~h-~~~~---------------~---~~~~q 53 (222)
T TIGR00289 2 KVAVLYSGGKDSILALYKALEE----HEVISLVGVFSENEE-----SYMFH-SPNL---------------H---LTDLV 53 (222)
T ss_pred eEEEEecCcHHHHHHHHHHHHc----CeeEEEEEEcCCCCC-----ccccc-cCCH---------------H---HHHHH
Confidence 6888899999999999888763 355667777654310 00000 0010 1 11123
Q ss_pred hhcCCCcEEEEEEEc--CChHHHHHHHhccCCCCEEEECCCC
Q 021587 192 CSQSKVMVDTVLIES--DLVAKAILDLIPVLNIRKLVVGTTK 231 (310)
Q Consensus 192 ~~~~gV~ve~~vveG--~~~aeaIve~A~e~~aDLIVMGSrG 231 (310)
++..|+........+ ..-.+.+.+..++.+++-||-|.=-
T Consensus 54 A~algiPl~~~~~~~~~e~~~~~l~~~l~~~gv~~vv~GdI~ 95 (222)
T TIGR00289 54 AEAVGIPLIKLYTSGEEEKEVEDLAGQLGELDVEALCIGAIE 95 (222)
T ss_pred HHHcCCCeEEEEcCCchhHHHHHHHHHHHHcCCCEEEECccc
Confidence 334466654443333 2224566666777789999998764
No 76
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=48.27 E-value=47 Score=33.65 Aligned_cols=59 Identities=14% Similarity=0.038 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEcCChHHHHHHHhccCCCCEEEECCC
Q 021587 171 ETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT 230 (310)
Q Consensus 171 e~~~~~~~e~a~elL~~~~~~~~~~gV~ve~~vveG~~~aeaIve~A~e~~aDLIVMGSr 230 (310)
.+++++..+...++|+++.+.+++.|..+.. ........+.|.++++++++..||.|..
T Consensus 39 ~~ik~~~~~~ld~~l~~~~~~~~~~g~~v~~-a~t~~eA~~~v~~i~~~~~~~~vv~~kS 97 (432)
T TIGR00273 39 KEIKLKVLENLDFYLDQLKENVTQRGGHVYY-AKTAEEARKIIGKVAQEKNGKKVVKSKS 97 (432)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHCCCEEEE-ECCHHHHHHHHHHHHHHhCCCEEEEcCc
Confidence 4445555567788888888888877765542 2223444667889999999999999854
No 77
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=48.22 E-value=2.6e+02 Score=27.76 Aligned_cols=36 Identities=11% Similarity=0.016 Sum_probs=29.2
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEec
Q 021587 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (310)
Q Consensus 109 ~~~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~ 148 (310)
...+++|++.|.-.|--|+.++.+ .|.+++.||...
T Consensus 175 ~~gkvvvllSGGiDS~vaa~l~~k----~G~~v~av~~~~ 210 (394)
T PRK01565 175 TSGKALLLLSGGIDSPVAGYLAMK----RGVEIEAVHFHS 210 (394)
T ss_pred CCCCEEEEECCChhHHHHHHHHHH----CCCEEEEEEEeC
Confidence 457899999999999988877654 478999999953
No 78
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=47.86 E-value=2.4e+02 Score=27.67 Aligned_cols=33 Identities=6% Similarity=-0.057 Sum_probs=26.4
Q ss_pred CEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEe
Q 021587 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVF 147 (310)
Q Consensus 111 ~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi 147 (310)
++|+|++-|...|.-++.++.+ .+.+|+.||+.
T Consensus 1 ~kVlValSGGvDSsv~a~lL~~----~G~~V~~v~~~ 33 (352)
T TIGR00420 1 KKVIVGLSGGVDSSVSAYLLKQ----QGYEVVGVFMK 33 (352)
T ss_pred CeEEEEEeCCHHHHHHHHHHHH----cCCeEEEEEEE
Confidence 4799999999999888876655 35689999884
No 79
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=47.75 E-value=1.1e+02 Score=27.82 Aligned_cols=36 Identities=8% Similarity=-0.017 Sum_probs=24.8
Q ss_pred CCEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEecC
Q 021587 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQ 149 (310)
Q Consensus 110 ~~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~~ 149 (310)
..|+|+-+-|.-.|--|. .+..++|.+|+.||...+
T Consensus 3 ~gk~l~LlSGGiDSpVAa----~lm~krG~~V~~l~f~~~ 38 (197)
T PF02568_consen 3 QGKALALLSGGIDSPVAA----WLMMKRGCEVIALHFDSP 38 (197)
T ss_dssp T-EEEEE-SSCCHHHHHH----HHHHCBT-EEEEEEEE-T
T ss_pred CceEEEEecCCccHHHHH----HHHHHCCCEEEEEEEECC
Confidence 358999998887777544 455668999999999854
No 80
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=47.68 E-value=2e+02 Score=28.43 Aligned_cols=34 Identities=9% Similarity=-0.018 Sum_probs=25.5
Q ss_pred CCEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEe
Q 021587 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVF 147 (310)
Q Consensus 110 ~~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi 147 (310)
.++|+|++.|.-.|.-++.+.. ..+.+++.||+.
T Consensus 5 ~~kVlVa~SGGvDSsv~a~lL~----~~G~eV~av~~~ 38 (362)
T PRK14664 5 KKRVLVGMSGGIDSTATCLMLQ----EQGYEIVGVTMR 38 (362)
T ss_pred CCEEEEEEeCCHHHHHHHHHHH----HcCCcEEEEEec
Confidence 3689999999988887776543 246678888884
No 81
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=47.57 E-value=1e+02 Score=28.64 Aligned_cols=26 Identities=8% Similarity=0.282 Sum_probs=19.9
Q ss_pred EEcCChHHHHHHHhccCCCCEEEECCC
Q 021587 204 IESDLVAKAILDLIPVLNIRKLVVGTT 230 (310)
Q Consensus 204 veG~~~aeaIve~A~e~~aDLIVMGSr 230 (310)
+.|+ +...-+..+.+-++|.+|+|+-
T Consensus 174 VDGG-I~~~t~~~~~~AGad~~VaGSa 199 (220)
T COG0036 174 VDGG-INLETIKQLAAAGADVFVAGSA 199 (220)
T ss_pred EeCC-cCHHHHHHHHHcCCCEEEEEEE
Confidence 3455 4677777777789999999993
No 82
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=47.42 E-value=95 Score=24.77 Aligned_cols=38 Identities=8% Similarity=0.019 Sum_probs=28.1
Q ss_pred HhhcCCCcEEEEEEEcCChHHHHHHHhccCCCCEEEECCC
Q 021587 191 TCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT 230 (310)
Q Consensus 191 ~~~~~gV~ve~~vveG~~~aeaIve~A~e~~aDLIVMGSr 230 (310)
.++..|+++. .+-...+.+.+++.+.+.++|+|++...
T Consensus 22 ~l~~~G~~V~--~lg~~~~~~~l~~~~~~~~pdvV~iS~~ 59 (119)
T cd02067 22 ALRDAGFEVI--DLGVDVPPEEIVEAAKEEDADAIGLSGL 59 (119)
T ss_pred HHHHCCCEEE--ECCCCCCHHHHHHHHHHcCCCEEEEecc
Confidence 3455677763 2223445789999999999999999877
No 83
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=47.28 E-value=1.9e+02 Score=28.15 Aligned_cols=33 Identities=12% Similarity=-0.017 Sum_probs=24.5
Q ss_pred EEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEec
Q 021587 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (310)
Q Consensus 112 kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~ 148 (310)
+|+|++-|...|.-++.++.+ .+.+++.||+..
T Consensus 1 kVlValSGGvDSsvla~lL~~----~g~~v~~v~i~~ 33 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKE----QGYEVIGVFMKN 33 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHH----cCCcEEEEEEec
Confidence 589999999888877765543 356788888753
No 84
>PRK14561 hypothetical protein; Provisional
Probab=45.98 E-value=1.8e+02 Score=25.87 Aligned_cols=32 Identities=19% Similarity=-0.096 Sum_probs=22.8
Q ss_pred CEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEe
Q 021587 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVF 147 (310)
Q Consensus 111 ~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi 147 (310)
+||+|++-|...|.-++.++.+. ..+.++|+.
T Consensus 1 mkV~ValSGG~DSslll~~l~~~-----~~v~a~t~~ 32 (194)
T PRK14561 1 MKAGVLFSGGKDSSLAAILLERF-----YDVELVTVN 32 (194)
T ss_pred CEEEEEEechHHHHHHHHHHHhc-----CCeEEEEEe
Confidence 37999999998888887766432 345666664
No 85
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=45.71 E-value=85 Score=34.24 Aligned_cols=40 Identities=25% Similarity=0.315 Sum_probs=34.6
Q ss_pred CEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEecCC
Q 021587 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQV 150 (310)
Q Consensus 111 ~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~~~ 150 (310)
.+|.+-.=|.+.-++|+.++.+++..+...+++++-++..
T Consensus 615 ~~v~~lF~GG~DDrEALa~~~rm~~~~~v~lTVirf~~~~ 654 (769)
T KOG1650|consen 615 YKVVVLFLGGKDDREALALAKRMAENPRVTLTVIRFFPDE 654 (769)
T ss_pred eEEEEEecCChhhHHHHHHHHHHhhCCceEEEEEEeeccc
Confidence 4677777788888899999999999999999999998754
No 86
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=45.49 E-value=46 Score=31.67 Aligned_cols=33 Identities=9% Similarity=0.179 Sum_probs=22.4
Q ss_pred EEEEcCChHHHHHHHhccC-------CCCEEEECCCCCCc
Q 021587 202 VLIESDLVAKAILDLIPVL-------NIRKLVVGTTKSSL 234 (310)
Q Consensus 202 ~vveG~~~aeaIve~A~e~-------~aDLIVMGSrG~g~ 234 (310)
..+.|...+..|++..+.. ++|+||+++-|-+.
T Consensus 49 ~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~ 88 (319)
T PF02601_consen 49 ASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSI 88 (319)
T ss_pred ccccccchHHHHHHHHHHHHhccccccccEEEEecCCCCh
Confidence 4456776677777554432 49999999887654
No 87
>cd03364 TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. E. coli DnaG is a single subunit enzyme.
Probab=45.29 E-value=58 Score=24.32 Aligned_cols=34 Identities=9% Similarity=0.071 Sum_probs=27.8
Q ss_pred CEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEE
Q 021587 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLI 144 (310)
Q Consensus 111 ~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LV 144 (310)
++|+++.|..+..++|.+.+.+.+...+-.+.++
T Consensus 44 ~~vii~~D~D~aG~~a~~~~~~~l~~~g~~~~~~ 77 (79)
T cd03364 44 KEVILAFDGDEAGQKAALRALELLLKLGLNVRVL 77 (79)
T ss_pred CeEEEEECCCHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 7899999999999999988888877666665543
No 88
>PRK00074 guaA GMP synthase; Reviewed
Probab=44.92 E-value=1.1e+02 Score=31.52 Aligned_cols=36 Identities=8% Similarity=0.005 Sum_probs=27.9
Q ss_pred CCEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEec
Q 021587 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (310)
Q Consensus 110 ~~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~ 148 (310)
.++|+||+-|...|.-++..+.+.. +.+++.||+-.
T Consensus 215 ~~~vlva~SGGvDS~vll~ll~~~l---g~~v~av~vd~ 250 (511)
T PRK00074 215 DKKVILGLSGGVDSSVAAVLLHKAI---GDQLTCVFVDH 250 (511)
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHh---CCceEEEEEeC
Confidence 4789999999988988777665432 56799999953
No 89
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=44.79 E-value=2.5e+02 Score=28.68 Aligned_cols=36 Identities=8% Similarity=-0.027 Sum_probs=29.5
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEec
Q 021587 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (310)
Q Consensus 109 ~~~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~ 148 (310)
...++||.+-|...|--|+.|+.+ .|.+++.||+..
T Consensus 176 ~~gk~lvllSGGiDS~va~~~~~k----rG~~v~~l~f~~ 211 (482)
T PRK01269 176 TQEDVLSLISGGFDSGVASYMLMR----RGSRVHYCFFNL 211 (482)
T ss_pred ccCeEEEEEcCCchHHHHHHHHHH----cCCEEEEEEEec
Confidence 457999999999999988876655 478999999963
No 90
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=44.60 E-value=1.5e+02 Score=26.11 Aligned_cols=31 Identities=16% Similarity=0.069 Sum_probs=22.3
Q ss_pred EEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEe
Q 021587 113 IYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVF 147 (310)
Q Consensus 113 ILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi 147 (310)
++|++-|...|.-++.++.+ .+.+++.+|+-
T Consensus 1 ~vv~lSGG~DSs~~~~~~~~----~g~~v~~~~~~ 31 (201)
T TIGR00364 1 AVVVLSGGQDSTTCLAIAKD----EGYEVHAITFD 31 (201)
T ss_pred CEEEeccHHHHHHHHHHHHH----cCCcEEEEEEE
Confidence 36888888888877766544 25578888885
No 91
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=44.32 E-value=50 Score=31.62 Aligned_cols=86 Identities=12% Similarity=0.121 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEEEEEcC-ChHHHHHHHhccCCCCEEEECCCCCCchhhhhcccCCCCcHHHHHHhhCCC
Q 021587 180 KRRQLLQKFLDTCSQSKVMVDTVLIESD-LVAKAILDLIPVLNIRKLVVGTTKSSLRVLRKSKSGRISGMADHILQTAPE 258 (310)
Q Consensus 180 ~a~elL~~~~~~~~~~gV~ve~~vveG~-~~aeaIve~A~e~~aDLIVMGSrG~g~~~l~r~~s~llGSVA~~Vl~~Ap~ 258 (310)
.+++.+.++.+.+++.++....++.+.. + +..+++.|...++|+||.+. |.|. + +.|+..+.++-.
T Consensus 17 ~~~~~~~~~~~~l~~~g~~~~~~~t~~~g~-a~~~a~~a~~~~~D~via~G-GDGT--v--------~evingl~~~~~- 83 (301)
T COG1597 17 KAKKLLREVEELLEEAGHELSVRVTEEAGD-AIEIAREAAVEGYDTVIAAG-GDGT--V--------NEVANGLAGTDD- 83 (301)
T ss_pred chhhHHHHHHHHHHhcCCeEEEEEeecCcc-HHHHHHHHHhcCCCEEEEec-Ccch--H--------HHHHHHHhcCCC-
Confidence 3455566666667777888887777655 5 78888888888999988764 4454 2 344666665443
Q ss_pred CceEEEEcCCc-ccccccccCC
Q 021587 259 TCEIKVVCEGK-EVIDQMINDS 279 (310)
Q Consensus 259 ~CpVlVV~~~k-~v~~~~~~~~ 279 (310)
.+ +-|+|-|- -.+.+...++
T Consensus 84 ~~-LgilP~GT~NdfAr~Lgip 104 (301)
T COG1597 84 PP-LGILPGGTANDFARALGIP 104 (301)
T ss_pred Cc-eEEecCCchHHHHHHcCCC
Confidence 12 77777654 3344444444
No 92
>PRK08576 hypothetical protein; Provisional
Probab=43.32 E-value=1.4e+02 Score=30.41 Aligned_cols=33 Identities=15% Similarity=-0.052 Sum_probs=25.4
Q ss_pred CEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEe
Q 021587 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVF 147 (310)
Q Consensus 111 ~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi 147 (310)
.+|+|++-|.+.|..+|..|.+... .+.+||+-
T Consensus 235 ~rVvVafSGGKDStvLL~La~k~~~----~V~aV~iD 267 (438)
T PRK08576 235 WTVIVPWSGGKDSTAALLLAKKAFG----DVTAVYVD 267 (438)
T ss_pred CCEEEEEcChHHHHHHHHHHHHhCC----CCEEEEeC
Confidence 3899999999999998877766542 26777764
No 93
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=43.12 E-value=1e+02 Score=24.31 Aligned_cols=38 Identities=5% Similarity=0.174 Sum_probs=26.6
Q ss_pred HhhcCCCcEEEEEEEcCChHHHHHHHhccCCCCEEEECCC
Q 021587 191 TCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT 230 (310)
Q Consensus 191 ~~~~~gV~ve~~vveG~~~aeaIve~A~e~~aDLIVMGSr 230 (310)
.+++.|+++. ++......+.+++.+.+.++|+|.+...
T Consensus 23 ~l~~~G~~v~--~~d~~~~~~~l~~~~~~~~pd~V~iS~~ 60 (121)
T PF02310_consen 23 YLRKAGHEVD--ILDANVPPEELVEALRAERPDVVGISVS 60 (121)
T ss_dssp HHHHTTBEEE--EEESSB-HHHHHHHHHHTTCSEEEEEES
T ss_pred HHHHCCCeEE--EECCCCCHHHHHHHHhcCCCcEEEEEcc
Confidence 3444576555 4433334699999999999999999873
No 94
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=41.60 E-value=28 Score=34.23 Aligned_cols=40 Identities=15% Similarity=0.023 Sum_probs=29.9
Q ss_pred hhcCCCcEEEEEEEcCChHHHH---HHHhccCCCCEEEECCCCC
Q 021587 192 CSQSKVMVDTVLIESDLVAKAI---LDLIPVLNIRKLVVGTTKS 232 (310)
Q Consensus 192 ~~~~gV~ve~~vveG~~~aeaI---ve~A~e~~aDLIVMGSrG~ 232 (310)
.++.|+.+-..- .|.+|+..+ +++|+..++|+|++-+.||
T Consensus 190 ~er~gv~vI~~~-~G~DpAaVafDAi~~Akar~~DvvliDTAGR 232 (340)
T COG0552 190 GERLGVPVISGK-EGADPAAVAFDAIQAAKARGIDVVLIDTAGR 232 (340)
T ss_pred HHHhCCeEEccC-CCCCcHHHHHHHHHHHHHcCCCEEEEeCccc
Confidence 344567666543 687877766 4678899999999999997
No 95
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=40.78 E-value=46 Score=27.36 Aligned_cols=33 Identities=15% Similarity=0.047 Sum_probs=23.9
Q ss_pred CEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEE
Q 021587 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLI 144 (310)
Q Consensus 111 ~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LV 144 (310)
+||+|++-||-...+++++..++.+ .+.+|.++
T Consensus 1 k~i~l~vtGs~~~~~~~~~l~~L~~-~g~~v~vv 33 (129)
T PF02441_consen 1 KRILLGVTGSIAAYKAPDLLRRLKR-AGWEVRVV 33 (129)
T ss_dssp -EEEEEE-SSGGGGGHHHHHHHHHT-TTSEEEEE
T ss_pred CEEEEEEECHHHHHHHHHHHHHHhh-CCCEEEEE
Confidence 5899999999999998888766554 47774443
No 96
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=38.30 E-value=1.7e+02 Score=28.49 Aligned_cols=37 Identities=14% Similarity=0.045 Sum_probs=29.2
Q ss_pred CEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEe
Q 021587 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVF 147 (310)
Q Consensus 111 ~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi 147 (310)
.+++++.-|.+.|.-.|..|.+.+...+..+-+|||-
T Consensus 38 ~~~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VD 74 (312)
T PRK12563 38 SKPVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVD 74 (312)
T ss_pred CCcEEEecCChHHHHHHHHHHHhhcccCCCeeEEEeC
Confidence 4578899999999999988877664445678899984
No 97
>PF03746 LamB_YcsF: LamB/YcsF family; InterPro: IPR005501 This entry represents the uncharacterised protein family UPF0271, including LamB. The lam locus of Emericella nidulans (Aspergillus nidulans) consists of two divergently transcribed genes, lamA and lamB, involved in the utilization of lactams such as 2-pyrrolidinone. Both genes are under the control of the positive regulatory gene amdR and are subject to carbon and nitrogen metabolite repression []. The exact molecular function of the proteins in this family is unknown.; PDB: 1V6T_A 1XW8_A 2XU2_A 2DFA_A.
Probab=38.26 E-value=1.6e+02 Score=27.61 Aligned_cols=58 Identities=14% Similarity=0.099 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEc---------CChHHHHHHHhccCCCCEEEECCCCC
Q 021587 175 AQETGKRRQLLQKFLDTCSQSKVMVDTVLIES---------DLVAKAILDLIPVLNIRKLVVGTTKS 232 (310)
Q Consensus 175 ~~~~e~a~elL~~~~~~~~~~gV~ve~~vveG---------~~~aeaIve~A~e~~aDLIVMGSrG~ 232 (310)
+++++.....+..+..+|+..|+++..+--+| ...+++|++.+++.+.+|++||-.|.
T Consensus 80 ~el~~~v~yQigaL~~~a~~~g~~l~hVKPHGALYn~~~~d~~lA~~i~~ai~~~~~~l~l~~~ags 146 (242)
T PF03746_consen 80 EELRDSVLYQIGALQAIAAAEGVPLHHVKPHGALYNMAAKDEELARAIAEAIKAFDPDLPLYGLAGS 146 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT--EEEE---HHHHHHHHH-HHHHHHHHHHHHHH-TT-EEEEETTS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeeEEecccHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEEcCCc
Confidence 44555666677778888888898888554444 24688999999999999999997754
No 98
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=38.08 E-value=2.1e+02 Score=27.22 Aligned_cols=87 Identities=15% Similarity=0.177 Sum_probs=53.5
Q ss_pred CCCCEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEecCCCcCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 021587 108 QEEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQK 187 (310)
Q Consensus 108 ~~~~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~~~~~ip~~~g~ip~~~~~~e~~e~~~~~~~e~a~elL~~ 187 (310)
....||.|-+-|+-....||-.+.+.- ..+++|.+|-.-.+ .+.
T Consensus 87 ~~~~ri~vl~Sg~gsnl~al~~~~~~~-~~~~~i~~visn~~------------------------------~~~----- 130 (286)
T PRK06027 87 AERKRVVILVSKEDHCLGDLLWRWRSG-ELPVEIAAVISNHD------------------------------DLR----- 130 (286)
T ss_pred ccCcEEEEEEcCCCCCHHHHHHHHHcC-CCCcEEEEEEEcCh------------------------------hHH-----
Confidence 356799999999988888888775432 23555555433211 011
Q ss_pred HHHHhhcCCCcEEEEEEE---cCChHHHHHHHhccCCCCEEEECCCCC
Q 021587 188 FLDTCSQSKVMVDTVLIE---SDLVAKAILDLIPVLNIRKLVVGTTKS 232 (310)
Q Consensus 188 ~~~~~~~~gV~ve~~vve---G~~~aeaIve~A~e~~aDLIVMGSrG~ 232 (310)
..+++.|+.+...-.. -......+++..+++++|+||+..-++
T Consensus 131 --~lA~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlagy~~ 176 (286)
T PRK06027 131 --SLVERFGIPFHHVPVTKETKAEAEARLLELIDEYQPDLVVLARYMQ 176 (286)
T ss_pred --HHHHHhCCCEEEeccCccccchhHHHHHHHHHHhCCCEEEEecchh
Confidence 1144557766532111 112245788888999999999988654
No 99
>PF13662 Toprim_4: Toprim domain; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=37.75 E-value=54 Score=24.60 Aligned_cols=34 Identities=6% Similarity=0.002 Sum_probs=23.0
Q ss_pred CCEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEE
Q 021587 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFL 143 (310)
Q Consensus 110 ~~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~L 143 (310)
.++|++++|.....+.+.....+.+...+-+++.
T Consensus 46 ~~~Vii~~D~D~~G~~~a~~i~~~l~~~gi~v~~ 79 (81)
T PF13662_consen 46 VKEVIIAFDNDKAGEKAAQKIAKKLLPLGIRVTR 79 (81)
T ss_dssp -SEEEEEEESSHHHHHHHHHHHHHHG--------
T ss_pred CceEEEEeCcCHHHHHHHHHHHHHHHhhcccccc
Confidence 3789999999999999999998877655655544
No 100
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=37.51 E-value=1.9e+02 Score=28.05 Aligned_cols=24 Identities=13% Similarity=0.260 Sum_probs=20.2
Q ss_pred hHHHHHHHhccCCCCEEEECCCCC
Q 021587 209 VAKAILDLIPVLNIRKLVVGTTKS 232 (310)
Q Consensus 209 ~aeaIve~A~e~~aDLIVMGSrG~ 232 (310)
....+.++|.++++.+|+-|.+..
T Consensus 148 ~~~~l~~~A~~~gi~~Il~G~~~d 171 (343)
T TIGR03573 148 IFASVYQVALKFNIPLIIWGENIA 171 (343)
T ss_pred HHHHHHHHHHHhCCCEEEeCCCHH
Confidence 356778999999999999998854
No 101
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=37.28 E-value=68 Score=25.36 Aligned_cols=66 Identities=9% Similarity=0.048 Sum_probs=37.2
Q ss_pred HHHHHHHhhcCCCcEEEEEEEcCChHHHHHHHhccCCCCEEEECCCCCCchhhhhcccCCCCcHHHHHHhhCCCCceEEE
Q 021587 185 LQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRVLRKSKSGRISGMADHILQTAPETCEIKV 264 (310)
Q Consensus 185 L~~~~~~~~~~gV~ve~~vveG~~~aeaIve~A~e~~aDLIVMGSrG~g~~~l~r~~s~llGSVA~~Vl~~Ap~~CpVlV 264 (310)
+.+..+.+++.|++++.... + ...+-+.+. ++|+|++|.+=+.. +..+ . ..+.... +||.+
T Consensus 20 ~~k~~~~~~~~gi~~~v~a~---~-~~~~~~~~~--~~Dvill~pqi~~~--~~~i--------~-~~~~~~~--ipv~~ 80 (95)
T TIGR00853 20 VNKMNKAAEEYGVPVKIAAG---S-YGAAGEKLD--DADVVLLAPQVAYM--LPDL--------K-KETDKKG--IPVEV 80 (95)
T ss_pred HHHHHHHHHHCCCcEEEEEe---c-HHHHHhhcC--CCCEEEECchHHHH--HHHH--------H-HHhhhcC--CCEEE
Confidence 34555566677888764332 3 334445544 57999999874322 2222 1 2232323 89998
Q ss_pred EcCCc
Q 021587 265 VCEGK 269 (310)
Q Consensus 265 V~~~k 269 (310)
++...
T Consensus 81 I~~~~ 85 (95)
T TIGR00853 81 INGAQ 85 (95)
T ss_pred eChhh
Confidence 87644
No 102
>PRK10674 deoxyribodipyrimidine photolyase; Provisional
Probab=37.08 E-value=2.7e+02 Score=28.26 Aligned_cols=86 Identities=9% Similarity=0.109 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhcCCCCEEEEEEEecCCCcCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEE
Q 021587 124 MDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVL 203 (310)
Q Consensus 124 ~~AL~wAl~lA~~~ga~L~LVHVi~~~~~ip~~~g~ip~~~~~~e~~e~~~~~~~e~a~elL~~~~~~~~~~gV~ve~~v 203 (310)
..||..|++.+ +..|+.|.|+++..... +. .... ...=..+-|..+.+.+++.|... .+
T Consensus 17 N~aL~~A~~~~---~~~vlpvyv~dp~~~~~------~~--~~~~--------r~~Fl~esL~~L~~~L~~~g~~L--~v 75 (472)
T PRK10674 17 NLALAAACRDP---SARVLALFIATPAQWAA------HD--MAPR--------QAAFINAQLNALQIALAEKGIPL--LF 75 (472)
T ss_pred HHHHHHHHhCC---CCCEEEEEEECchhhcc------CC--CCHH--------HHHHHHHHHHHHHHHHHHcCCce--EE
Confidence 44666665432 24699999998742100 00 0110 11123344555555565556554 45
Q ss_pred EEc---CChHHHHHHHhccCCCCEEEECCC
Q 021587 204 IES---DLVAKAILDLIPVLNIRKLVVGTT 230 (310)
Q Consensus 204 veG---~~~aeaIve~A~e~~aDLIVMGSr 230 (310)
+.| +.+.+.|.+++++++|+.|+.-..
T Consensus 76 ~~g~~~g~~~~vl~~l~~~~~i~~v~~~~~ 105 (472)
T PRK10674 76 HEVDDFAASVEWLKQFCQQHQVTHLFYNYQ 105 (472)
T ss_pred EecCCcCCHHHHHHHHHHHcCCCEEEEecc
Confidence 555 256899999999999999998654
No 103
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=36.87 E-value=3e+02 Score=26.00 Aligned_cols=93 Identities=10% Similarity=0.064 Sum_probs=52.9
Q ss_pred EEEEeecC-C-HHHHHHHHHHHHHhcCCCCEEEEEEEecCCCcCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 021587 112 IIYVAVGK-S-QSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFL 189 (310)
Q Consensus 112 kILVAVDg-S-e~S~~AL~wAl~lA~~~ga~L~LVHVi~~~~~ip~~~g~ip~~~~~~e~~e~~~~~~~e~a~elL~~~~ 189 (310)
+++|-... | +.-..++++|..+. ..+..+.....+.|... | .++-. -.++.|..++
T Consensus 27 ~~~~iaGPCsie~~~~~~~~A~~lk-~~g~~~~r~~~~kpRTs-~--~s~~G------------------~g~~gl~~l~ 84 (266)
T PRK13398 27 EKIIIAGPCAVESEEQMVKVAEKLK-ELGVHMLRGGAFKPRTS-P--YSFQG------------------LGEEGLKILK 84 (266)
T ss_pred CEEEEEeCCcCCCHHHHHHHHHHHH-HcCCCEEEEeeecCCCC-C--CccCC------------------cHHHHHHHHH
Confidence 44443333 3 44455666665544 46778888888876532 1 11100 0133445555
Q ss_pred HHhhcCCCcEEEEEEEcCChHHHHHHHhccCCCCEEEECCCCC
Q 021587 190 DTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKS 232 (310)
Q Consensus 190 ~~~~~~gV~ve~~vveG~~~aeaIve~A~e~~aDLIVMGSrG~ 232 (310)
+.|++.|+.+-+.+..-.. ++++.+. +|++-+|++-.
T Consensus 85 ~~~~~~Gl~~~te~~d~~~-----~~~l~~~-vd~~kIga~~~ 121 (266)
T PRK13398 85 EVGDKYNLPVVTEVMDTRD-----VEEVADY-ADMLQIGSRNM 121 (266)
T ss_pred HHHHHcCCCEEEeeCChhh-----HHHHHHh-CCEEEECcccc
Confidence 5667788888776653332 3344444 79999999865
No 104
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=35.28 E-value=68 Score=28.70 Aligned_cols=34 Identities=6% Similarity=-0.002 Sum_probs=26.2
Q ss_pred CEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEE
Q 021587 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLI 144 (310)
Q Consensus 111 ~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LV 144 (310)
+||+++|-||-.+.++++.+-.+.+..+.+|.++
T Consensus 2 k~IllgVTGsiaa~ka~~l~~~L~k~~g~~V~vv 35 (185)
T PRK06029 2 KRLIVGISGASGAIYGVRLLQVLRDVGEIETHLV 35 (185)
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHhhcCCeEEEE
Confidence 6899999999999999998876654346664433
No 105
>TIGR00930 2a30 K-Cl cotransporter.
Probab=35.21 E-value=4.6e+02 Score=29.46 Aligned_cols=95 Identities=16% Similarity=0.168 Sum_probs=57.3
Q ss_pred EEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEecCCCcCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 021587 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDT 191 (310)
Q Consensus 112 kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~~~~~ip~~~g~ip~~~~~~e~~e~~~~~~~e~a~elL~~~~~~ 191 (310)
+|||.++.-......+++|-.+. +...-+++.||.+... .+..++ .+..++.+.++
T Consensus 577 qiLvl~~~p~~~~~Ll~f~~~l~-~~~gl~i~~~v~~~~~---------------~~~~~~-----~~~~~~~~~~~--- 632 (953)
T TIGR00930 577 QCLVLTGPPVCRPALLDFASQFT-KGKGLMICGSVIQGPR---------------LECVKE-----AQAAEAKIQTW--- 632 (953)
T ss_pred eEEEEeCCCcCcHHHHHHHHHhc-cCCcEEEEEEEecCch---------------hhhHHH-----HHHHHHHHHHH---
Confidence 69999977777788888887666 3446788889985320 000010 11122222222
Q ss_pred hhcCCCcEEEEEEEcCChHHHHHHHhccC-----CCCEEEECCC
Q 021587 192 CSQSKVMVDTVLIESDLVAKAILDLIPVL-----NIRKLVVGTT 230 (310)
Q Consensus 192 ~~~~gV~ve~~vveG~~~aeaIve~A~e~-----~aDLIVMGSr 230 (310)
.+..+++.-..++...++.+.+-.+.+-. +...||||=.
T Consensus 633 ~~~~~~~~f~~~~~~~~~~~g~~~l~q~~GlG~l~PNtv~lg~~ 676 (953)
T TIGR00930 633 LEKNKVKAFYAVVVADDLREGVRHLIQASGLGRMKPNTLVMGYK 676 (953)
T ss_pred HHHhCCCeEEEEecCCCHHHHHHHHHHhcCCCCCCCCEEEecCc
Confidence 23345666556666777778777776643 4678999865
No 106
>PRK13055 putative lipid kinase; Reviewed
Probab=34.75 E-value=2.6e+02 Score=26.87 Aligned_cols=73 Identities=10% Similarity=0.100 Sum_probs=40.5
Q ss_pred HHHHHHHHhhcCCCcEEEEEEEc--CChHHHHHHHhccCCCCEEEECCCCCCchhhhhcccCCCCcHHHHHHhhCCCCce
Q 021587 184 LLQKFLDTCSQSKVMVDTVLIES--DLVAKAILDLIPVLNIRKLVVGTTKSSLRVLRKSKSGRISGMADHILQTAPETCE 261 (310)
Q Consensus 184 lL~~~~~~~~~~gV~ve~~vveG--~~~aeaIve~A~e~~aDLIVMGSrG~g~~~l~r~~s~llGSVA~~Vl~~Ap~~Cp 261 (310)
.+.++...+.+.++.++....+. +. ++.+++.+.+.++|+||+. -|.|. +... +..++... ...|
T Consensus 21 ~~~~i~~~l~~~g~~~~i~~t~~~~~~-a~~~~~~~~~~~~d~vvv~-GGDGT--l~ev--------vngl~~~~-~~~~ 87 (334)
T PRK13055 21 NVADILDILEQAGYETSAFQTTPEPNS-AKNEAKRAAEAGFDLIIAA-GGDGT--INEV--------VNGIAPLE-KRPK 87 (334)
T ss_pred HHHHHHHHHHHcCCeEEEEEeecCCcc-HHHHHHHHhhcCCCEEEEE-CCCCH--HHHH--------HHHHhhcC-CCCc
Confidence 34445555666677777554442 34 5677776666678876654 24454 3332 44444322 1257
Q ss_pred EEEEcCCc
Q 021587 262 IKVVCEGK 269 (310)
Q Consensus 262 VlVV~~~k 269 (310)
+-|+|-|-
T Consensus 88 LgiiP~GT 95 (334)
T PRK13055 88 MAIIPAGT 95 (334)
T ss_pred EEEECCCc
Confidence 77788654
No 107
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=34.71 E-value=52 Score=30.66 Aligned_cols=47 Identities=11% Similarity=0.227 Sum_probs=27.2
Q ss_pred CCCEEEECCCCC---CchhhhhcccCCCCcHHHHHHhhCCCCceEEEEcCCcccccc
Q 021587 221 NIRKLVVGTTKS---SLRVLRKSKSGRISGMADHILQTAPETCEIKVVCEGKEVIDQ 274 (310)
Q Consensus 221 ~aDLIVMGSrG~---g~~~l~r~~s~llGSVA~~Vl~~Ap~~CpVlVV~~~k~v~~~ 274 (310)
++|++++|+..- |. ++. ..|+-...++.+.. ..||+|+++..-....
T Consensus 176 ~vd~VliGad~v~~nG~-v~n-----k~Gt~~~a~~Ak~~-~vPv~v~~~~~K~~~~ 225 (282)
T PF01008_consen 176 DVDKVLIGADAVLANGG-VVN-----KVGTLQLALAAKEF-NVPVYVLAESYKFSPR 225 (282)
T ss_dssp TESEEEEE-SEEETTS--EEE-----ETTHHHHHHHHHHT-T-EEEEE--GGGBETT
T ss_pred hCCeeEEeeeEEecCCC-Eee-----hhhHHHHHHHHHhh-CCCEEEEccccccccc
Confidence 699999999963 42 122 35666655655554 3999999876554444
No 108
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=34.63 E-value=3.9e+02 Score=25.50 Aligned_cols=45 Identities=11% Similarity=0.042 Sum_probs=29.9
Q ss_pred CCEEEECCCCC---CchhhhhcccCCCCcHHHHHHhhCCCCceEEEEcCCccccc
Q 021587 222 IRKLVVGTTKS---SLRVLRKSKSGRISGMADHILQTAPETCEIKVVCEGKEVID 273 (310)
Q Consensus 222 aDLIVMGSrG~---g~~~l~r~~s~llGSVA~~Vl~~Ap~~CpVlVV~~~k~v~~ 273 (310)
+|++|+|+.+- |. .+. +.|+-...++.+.+ ..||+|+++..-...
T Consensus 178 vd~VivGAD~I~~nG~-v~N-----KiGT~~lA~~Ak~~-~vPfyV~a~~~k~~~ 225 (275)
T PRK08335 178 ATLALVGADNVTRDGY-VVN-----KAGTYLLALACHDN-GVPFYVAAETFKFHP 225 (275)
T ss_pred CCEEEECccEEecCCC-Eee-----hhhHHHHHHHHHHc-CCCEEEECccceecc
Confidence 99999999863 32 122 45666666665555 399999987554433
No 109
>PRK08005 epimerase; Validated
Probab=34.33 E-value=2.6e+02 Score=25.49 Aligned_cols=28 Identities=14% Similarity=0.306 Sum_probs=19.3
Q ss_pred EEEEcCChHHHHHHHhccCCCCEEEECCC
Q 021587 202 VLIESDLVAKAILDLIPVLNIRKLVVGTT 230 (310)
Q Consensus 202 ~vveG~~~aeaIve~A~e~~aDLIVMGSr 230 (310)
.-+.|+ +...-+..+.+.++|.+|+|+.
T Consensus 166 I~VDGG-I~~~~i~~l~~aGad~~V~Gsa 193 (210)
T PRK08005 166 CWADGG-ITLRAARLLAAAGAQHLVIGRA 193 (210)
T ss_pred EEEECC-CCHHHHHHHHHCCCCEEEEChH
Confidence 344566 3555555666679999999964
No 110
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=33.71 E-value=71 Score=28.25 Aligned_cols=33 Identities=18% Similarity=0.111 Sum_probs=24.7
Q ss_pred CEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEE
Q 021587 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLI 144 (310)
Q Consensus 111 ~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LV 144 (310)
+||+|++-||-.+.+++++.-. +++.+.+|+++
T Consensus 1 k~I~lgvtGs~~a~~~~~ll~~-L~~~g~~V~vi 33 (177)
T TIGR02113 1 KKILLAVTGSIAAYKAADLTSQ-LTKLGYDVTVL 33 (177)
T ss_pred CEEEEEEcCHHHHHHHHHHHHH-HHHCCCEEEEE
Confidence 5899999999999999976654 44557665433
No 111
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=33.32 E-value=2e+02 Score=28.67 Aligned_cols=33 Identities=9% Similarity=0.120 Sum_probs=26.6
Q ss_pred EEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEec
Q 021587 113 IYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (310)
Q Consensus 113 ILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~ 148 (310)
|+|++-|.-.|--++.|+.+.. +.+|+.+|+-.
T Consensus 1 Vvva~SGGlDSsvll~~l~e~~---~~eV~av~~d~ 33 (385)
T cd01999 1 VVLAYSGGLDTSVILKWLKEKG---GYEVIAVTADV 33 (385)
T ss_pred CEEEecCCHHHHHHHHHHHHhC---CCeEEEEEEEC
Confidence 6889999999999999987642 45899999963
No 112
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=32.97 E-value=3.8e+02 Score=24.76 Aligned_cols=34 Identities=15% Similarity=0.039 Sum_probs=26.7
Q ss_pred CEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEec
Q 021587 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (310)
Q Consensus 111 ~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~ 148 (310)
++++|++-|.-.|--++.||.+. +.+++.|++-.
T Consensus 2 ~kvvVl~SGG~DSt~~l~~a~~~----~~~v~alt~dy 35 (231)
T PRK11106 2 KRAVVVFSGGQDSTTCLIQALQQ----YDEVHCVTFDY 35 (231)
T ss_pred CcEEEEeeCcHHHHHHHHHHHhc----CCeEEEEEEEe
Confidence 47999999999999999888542 35788888863
No 113
>TIGR02766 crypt_chrom_pln cryptochrome, plant family. At least five major families of cryptochomes and photolyases share FAD cofactor binding, sequence homology, and the ability to react to short wavelengths of visible light. Photolysases are responsible for light-dependent DNA repair by removal of two types of uv-induced DNA dimerizations. Cryptochromes have other functions, often regulatory and often largely unknown, which may include circadian clock entrainment and control of development. Members of this subfamily are known so far only in plants; they may show some photolyase activity in vitro but appear mostly to be regulatory proteins that respond to blue light.
Probab=32.04 E-value=2.8e+02 Score=28.03 Aligned_cols=48 Identities=17% Similarity=0.125 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhhcCCCcEEEEEEEcCChHHHHHHHhccCCCCEEEECCCC
Q 021587 182 RQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTK 231 (310)
Q Consensus 182 ~elL~~~~~~~~~~gV~ve~~vveG~~~aeaIve~A~e~~aDLIVMGSrG 231 (310)
.+-|..+.+.+++.|.... ++.++.+.++|.+++++++++.|..-...
T Consensus 50 ~~sL~~L~~~L~~~G~~L~--v~~~g~~~~~l~~l~~~~~i~~v~~~~~~ 97 (475)
T TIGR02766 50 KQSLAHLDQSLRSLGTCLV--TIRSTDTVAALLDCVRSTGATRLFFNHLY 97 (475)
T ss_pred HHHHHHHHHHHHHcCCceE--EEeCCCHHHHHHHHHHHcCCCEEEEeccc
Confidence 3445555555666565544 33345568999999999999999877664
No 114
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=32.02 E-value=67 Score=31.43 Aligned_cols=47 Identities=15% Similarity=0.236 Sum_probs=33.7
Q ss_pred HHHHHHHHhhcCCCcEEEEEEEcCChHHHHHHHhccCCCCEEEECCCCCCc
Q 021587 184 LLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSL 234 (310)
Q Consensus 184 lL~~~~~~~~~~gV~ve~~vveG~~~aeaIve~A~e~~aDLIVMGSrG~g~ 234 (310)
++..+...+++.|.++-..... .+.+.++++.++++.+++|.+|.+.
T Consensus 15 fFk~~I~eL~~~GheV~it~R~----~~~~~~LL~~yg~~y~~iG~~g~~~ 61 (335)
T PF04007_consen 15 FFKNIIRELEKRGHEVLITARD----KDETEELLDLYGIDYIVIGKHGDSL 61 (335)
T ss_pred HHHHHHHHHHhCCCEEEEEEec----cchHHHHHHHcCCCeEEEcCCCCCH
Confidence 4556666667778776644443 4566777778999999999999654
No 115
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=31.92 E-value=1.2e+02 Score=24.47 Aligned_cols=42 Identities=10% Similarity=-0.040 Sum_probs=26.7
Q ss_pred HHHHHHhhcCCCcEEEEEEEcCChHHHHHHHhccCCCCEEEECCCC
Q 021587 186 QKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTK 231 (310)
Q Consensus 186 ~~~~~~~~~~gV~ve~~vveG~~~aeaIve~A~e~~aDLIVMGSrG 231 (310)
++.++.+++.|+.++... .+ ...+-++....++|+|++|.+=
T Consensus 19 ~k~k~~~~e~gi~~~i~a---~~-~~e~~~~~~~~~~DvIll~PQi 60 (104)
T PRK09590 19 KKTTEYLKEQGKDIEVDA---IT-ATEGEKAIAAAEYDLYLVSPQT 60 (104)
T ss_pred HHHHHHHHHCCCceEEEE---ec-HHHHHHhhccCCCCEEEEChHH
Confidence 344555666788766332 23 3455566566689999999873
No 116
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=31.80 E-value=1e+02 Score=30.84 Aligned_cols=55 Identities=18% Similarity=0.168 Sum_probs=31.8
Q ss_pred EEEEcCChHHHHHHHhccC---CCCEEEECCCCCCchhhhhcccCCCC--cHHHHHHhhCCCCceEEE
Q 021587 202 VLIESDLVAKAILDLIPVL---NIRKLVVGTTKSSLRVLRKSKSGRIS--GMADHILQTAPETCEIKV 264 (310)
Q Consensus 202 ~vveG~~~aeaIve~A~e~---~aDLIVMGSrG~g~~~l~r~~s~llG--SVA~~Vl~~Ap~~CpVlV 264 (310)
..+.|...+..|++..+.. ++|+||+|+-|-+. ..+. .+. .++..|.. ++ .||+.
T Consensus 170 ~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS~---eDL~--~Fn~e~v~~ai~~-~~--~Pvis 229 (438)
T PRK00286 170 TLVQGEGAAASIVAAIERANARGEDVLIVARGGGSL---EDLW--AFNDEAVARAIAA-SR--IPVIS 229 (438)
T ss_pred CcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCCH---HHhh--ccCcHHHHHHHHc-CC--CCEEE
Confidence 3456776677777654433 36999999887654 4441 222 24555543 34 67643
No 117
>PF02878 PGM_PMM_I: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro: IPR005844 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain I found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 3I3W_B 1WQA_C 1KFQ_B 1KFI_A 2Z0F_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=31.77 E-value=92 Score=25.78 Aligned_cols=39 Identities=13% Similarity=-0.050 Sum_probs=33.0
Q ss_pred CCEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEec
Q 021587 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (310)
Q Consensus 110 ~~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~ 148 (310)
..+|+|+-|....|....+++++-+...|..|+.+...+
T Consensus 40 ~~~VvVg~D~R~~s~~~~~~~~~~l~~~G~~V~~~g~~~ 78 (137)
T PF02878_consen 40 GSRVVVGRDTRPSSPMLAKALAAGLRANGVDVIDIGLVP 78 (137)
T ss_dssp SSEEEEEE-SSTTHHHHHHHHHHHHHHTTEEEEEEEEB-
T ss_pred CCeEEEEEcccCCHHHHHHHHHHHHhhcccccccccccC
Confidence 578999999999999999999988888899999888554
No 118
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=31.60 E-value=3e+02 Score=26.36 Aligned_cols=86 Identities=15% Similarity=0.187 Sum_probs=53.6
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEecCCCcCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 021587 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKF 188 (310)
Q Consensus 109 ~~~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~~~~~ip~~~g~ip~~~~~~e~~e~~~~~~~e~a~elL~~~ 188 (310)
...||.|-+-|+.+...||-+|.+.- ..++++. -|+... + .+
T Consensus 92 ~~~kiavl~Sg~g~nl~al~~~~~~~-~l~~~i~--~visn~----------------~------------~~------- 133 (289)
T PRK13010 92 QRPKVVIMVSKFDHCLNDLLYRWRMG-ELDMDIV--GIISNH----------------P------------DL------- 133 (289)
T ss_pred CCeEEEEEEeCCCccHHHHHHHHHCC-CCCcEEE--EEEECC----------------h------------hH-------
Confidence 45689999999999999999986533 2344444 444321 0 01
Q ss_pred HHHhhcCCCcEEEEEEE-c--CChHHHHHHHhccCCCCEEEECCCCC
Q 021587 189 LDTCSQSKVMVDTVLIE-S--DLVAKAILDLIPVLNIRKLVVGTTKS 232 (310)
Q Consensus 189 ~~~~~~~gV~ve~~vve-G--~~~aeaIve~A~e~~aDLIVMGSrG~ 232 (310)
.+.+++.|+.+...-.. . ......+++..+++++|+||+..-.+
T Consensus 134 ~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlagym~ 180 (289)
T PRK13010 134 QPLAVQHDIPFHHLPVTPDTKAQQEAQILDLIETSGAELVVLARYMQ 180 (289)
T ss_pred HHHHHHcCCCEEEeCCCcccccchHHHHHHHHHHhCCCEEEEehhhh
Confidence 12344557766532111 1 11245788999999999999987654
No 119
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=31.32 E-value=96 Score=27.50 Aligned_cols=33 Identities=18% Similarity=0.157 Sum_probs=25.8
Q ss_pred CEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEE
Q 021587 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLI 144 (310)
Q Consensus 111 ~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LV 144 (310)
+||+|+|-||-.+.++.++.-.+. +.+.+|+++
T Consensus 2 k~Ill~vtGsiaa~~~~~li~~L~-~~g~~V~vv 34 (182)
T PRK07313 2 KNILLAVSGSIAAYKAADLTSQLT-KRGYQVTVL 34 (182)
T ss_pred CEEEEEEeChHHHHHHHHHHHHHH-HCCCEEEEE
Confidence 689999999999999988876654 457665543
No 120
>PRK13054 lipid kinase; Reviewed
Probab=31.30 E-value=2.3e+02 Score=26.68 Aligned_cols=67 Identities=9% Similarity=0.091 Sum_probs=37.4
Q ss_pred HhhcCCCcEEEEEEE-cCChHHHHHHHhccCCCCEEEECCCCCCchhhhhcccCCCCcHHHHHHhhC-CCCceEEEEcCC
Q 021587 191 TCSQSKVMVDTVLIE-SDLVAKAILDLIPVLNIRKLVVGTTKSSLRVLRKSKSGRISGMADHILQTA-PETCEIKVVCEG 268 (310)
Q Consensus 191 ~~~~~gV~ve~~vve-G~~~aeaIve~A~e~~aDLIVMGSrG~g~~~l~r~~s~llGSVA~~Vl~~A-p~~CpVlVV~~~ 268 (310)
.+.+.+++++....+ .++ +..+++.+...++|.||+. -|.|. +.. |++.+++.. ...||+-|+|-|
T Consensus 26 ~l~~~g~~~~v~~t~~~~~-a~~~a~~~~~~~~d~vvv~-GGDGT--l~e--------vv~~l~~~~~~~~~~lgiiP~G 93 (300)
T PRK13054 26 LLREEGHTLHVRVTWEKGD-AARYVEEALALGVATVIAG-GGDGT--INE--------VATALAQLEGDARPALGILPLG 93 (300)
T ss_pred HHHHcCCEEEEEEecCCCc-HHHHHHHHHHcCCCEEEEE-CCccH--HHH--------HHHHHHhhccCCCCcEEEEeCC
Confidence 345567776654443 244 5677766655678866543 34454 333 345555431 113788889865
Q ss_pred c
Q 021587 269 K 269 (310)
Q Consensus 269 k 269 (310)
-
T Consensus 94 T 94 (300)
T PRK13054 94 T 94 (300)
T ss_pred c
Confidence 4
No 121
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=30.70 E-value=91 Score=28.01 Aligned_cols=34 Identities=18% Similarity=0.162 Sum_probs=24.8
Q ss_pred CEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEE
Q 021587 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLI 144 (310)
Q Consensus 111 ~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LV 144 (310)
+||+++|-||-.+.+++...++.+.+.+.+|+++
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI 34 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPI 34 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEE
Confidence 4799999999999999733445555567775544
No 122
>PF13362 Toprim_3: Toprim domain
Probab=30.45 E-value=1.2e+02 Score=23.42 Aligned_cols=36 Identities=6% Similarity=0.076 Sum_probs=27.5
Q ss_pred CCCEEEEeecCCHH--HHHHHHHHHHHhcCCCCEEEEE
Q 021587 109 EEDIIYVAVGKSQS--SMDALSWTLRHAVNPSTLIFLI 144 (310)
Q Consensus 109 ~~~kILVAVDgSe~--S~~AL~wAl~lA~~~ga~L~LV 144 (310)
..++|+|+.|.... .+++..-+.+.+...+..+.++
T Consensus 40 ~~~~vii~~D~D~~~~G~~~a~~~~~~~~~~g~~~~~~ 77 (96)
T PF13362_consen 40 PGRRVIIAADNDKANEGQKAAEKAAERLEAAGIAVSIV 77 (96)
T ss_pred CCCeEEEEECCCCchhhHHHHHHHHHHHHhCCCeEEEE
Confidence 56899999999877 8888888877776666555444
No 123
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=30.35 E-value=1.1e+02 Score=29.28 Aligned_cols=44 Identities=25% Similarity=0.286 Sum_probs=31.6
Q ss_pred HHHHHhhcCCCcEEEEEE-EcCChHHHHHHHhccCCCCEEEECCCC
Q 021587 187 KFLDTCSQSKVMVDTVLI-ESDLVAKAILDLIPVLNIRKLVVGTTK 231 (310)
Q Consensus 187 ~~~~~~~~~gV~ve~~vv-eG~~~aeaIve~A~e~~aDLIVMGSrG 231 (310)
...+.-++.++.+....+ |... .+.|.++.+++..|+||+--|-
T Consensus 119 ~Cl~~Ykql~i~a~G~~~~E~eq-p~~i~~Ll~~~~PDIlViTGHD 163 (283)
T TIGR02855 119 KCLKLYKKIGVPVVGIHCKEKEM-PEKVLDLIEEVRPDILVITGHD 163 (283)
T ss_pred HHHHHHHHhCCceEEEEecchhc-hHHHHHHHHHhCCCEEEEeCch
Confidence 333333445788776555 4444 6999999999999999997773
No 124
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=30.31 E-value=2.9e+02 Score=27.53 Aligned_cols=35 Identities=9% Similarity=0.135 Sum_probs=28.0
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEe
Q 021587 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVF 147 (310)
Q Consensus 109 ~~~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi 147 (310)
...+|||++-|...|--|+.... +.|.+|..||+.
T Consensus 179 s~gkvlvllSGGiDSpVAa~ll~----krG~~V~~v~f~ 213 (381)
T PRK08384 179 TQGKVVALLSGGIDSPVAAFLMM----KRGVEVIPVHIY 213 (381)
T ss_pred CCCcEEEEEeCChHHHHHHHHHH----HcCCeEEEEEEE
Confidence 45899999999988887664433 368999999996
No 125
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=30.27 E-value=4.3e+02 Score=24.19 Aligned_cols=125 Identities=12% Similarity=0.105 Sum_probs=66.3
Q ss_pred EEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEecCCCcCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 021587 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDT 191 (310)
Q Consensus 112 kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~~~~~ip~~~g~ip~~~~~~e~~e~~~~~~~e~a~elL~~~~~~ 191 (310)
||.|=+-|+-....|+--|+. ....++++.+ |+....- . ...+.
T Consensus 2 ki~VlaSG~GSNlqaiida~~-~~~~~a~i~~--Visd~~~-----A----------------------------~~ler 45 (200)
T COG0299 2 KIAVLASGNGSNLQAIIDAIK-GGKLDAEIVA--VISDKAD-----A----------------------------YALER 45 (200)
T ss_pred eEEEEEeCCcccHHHHHHHHh-cCCCCcEEEE--EEeCCCC-----C----------------------------HHHHH
Confidence 678888888888888887776 2223455444 4432210 0 11122
Q ss_pred hhcCCCcEEEEEEEcC----ChHHHHHHHhccCCCCEEEECCCCC--Cchhhhhcc-----------cCCCCc-HHHHHH
Q 021587 192 CSQSKVMVDTVLIESD----LVAKAILDLIPVLNIRKLVVGTTKS--SLRVLRKSK-----------SGRISG-MADHIL 253 (310)
Q Consensus 192 ~~~~gV~ve~~vveG~----~~aeaIve~A~e~~aDLIVMGSrG~--g~~~l~r~~-----------s~llGS-VA~~Vl 253 (310)
+++.|+.....-...- .-..+|++..+++++|+||+.--=+ +.-++.+|. ..+-|- +-.+++
T Consensus 46 A~~~gIpt~~~~~k~~~~r~~~d~~l~~~l~~~~~dlvvLAGyMrIL~~~fl~~~~grIlNIHPSLLP~f~G~h~~~~A~ 125 (200)
T COG0299 46 AAKAGIPTVVLDRKEFPSREAFDRALVEALDEYGPDLVVLAGYMRILGPEFLSRFEGRILNIHPSLLPAFPGLHAHEQAL 125 (200)
T ss_pred HHHcCCCEEEeccccCCCHHHHHHHHHHHHHhcCCCEEEEcchHHHcCHHHHHHhhcceEecCcccccCCCCchHHHHHH
Confidence 3445665532222111 1456889999999999999976522 222244331 112222 223333
Q ss_pred hhC-C-CCceEEEEcCCcccc
Q 021587 254 QTA-P-ETCEIKVVCEGKEVI 272 (310)
Q Consensus 254 ~~A-p-~~CpVlVV~~~k~v~ 272 (310)
+.- + ..|.|..|-.+-+.+
T Consensus 126 ~aG~k~sG~TVH~V~e~vD~G 146 (200)
T COG0299 126 EAGVKVSGCTVHFVTEGVDTG 146 (200)
T ss_pred HcCCCccCcEEEEEccCCCCC
Confidence 321 1 139999998766544
No 126
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=29.90 E-value=2e+02 Score=23.11 Aligned_cols=41 Identities=12% Similarity=0.175 Sum_probs=26.0
Q ss_pred HHHHHhhcCCCcEEEEEEEcCChHHHHHHHhccCCCCEEEECCCCCC
Q 021587 187 KFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSS 233 (310)
Q Consensus 187 ~~~~~~~~~gV~ve~~vveG~~~aeaIve~A~e~~aDLIVMGSrG~g 233 (310)
+.++.++++|+.++..-. + ...+-+... ++|+|++|.+-+.
T Consensus 19 km~~~a~~~gi~~~i~a~---~-~~e~~~~~~--~~Dvill~PQv~~ 59 (99)
T cd05565 19 ALNKGAKERGVPLEAAAG---A-YGSHYDMIP--DYDLVILAPQMAS 59 (99)
T ss_pred HHHHHHHHCCCcEEEEEe---e-HHHHHHhcc--CCCEEEEcChHHH
Confidence 444556667888774322 2 345556555 5799999998543
No 127
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=29.84 E-value=1.1e+02 Score=29.49 Aligned_cols=46 Identities=17% Similarity=0.148 Sum_probs=32.9
Q ss_pred HHHHHHHhhcCCCcEEEEEEEcCChHHHHHHHhccCCCCEEEECCC
Q 021587 185 LQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT 230 (310)
Q Consensus 185 L~~~~~~~~~~gV~ve~~vveG~~~aeaIve~A~e~~aDLIVMGSr 230 (310)
|+...+.-++.++.+....+.-..-.+.|.++.++++.|.||+--|
T Consensus 118 L~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGH 163 (287)
T PF05582_consen 118 LNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLLEEYRPDILVITGH 163 (287)
T ss_pred HHHHHHHHHHcCCceEEEEechHHhhHHHHHHHHHcCCCEEEEeCc
Confidence 3333334445688888766643334699999999999999999766
No 128
>PLN02285 methionyl-tRNA formyltransferase
Probab=29.53 E-value=3.8e+02 Score=26.08 Aligned_cols=22 Identities=9% Similarity=0.086 Sum_probs=17.2
Q ss_pred HHHHHHhccCCCCEEEECCCCC
Q 021587 211 KAILDLIPVLNIRKLVVGTTKS 232 (310)
Q Consensus 211 eaIve~A~e~~aDLIVMGSrG~ 232 (310)
+.+++..++.++|+||+-.-++
T Consensus 83 ~~~~~~l~~~~~Dliv~~~~~~ 104 (334)
T PLN02285 83 EDFLSALRELQPDLCITAAYGN 104 (334)
T ss_pred HHHHHHHHhhCCCEEEhhHhhh
Confidence 4567777788999999987664
No 129
>cd01029 TOPRIM_primases TOPRIM_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of bacterial DnaG-type primases and their homologs. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. The prototypical bacterial primase. Escherichia coli DnaG is a single subunit enzyme.
Probab=28.86 E-value=1.5e+02 Score=21.64 Aligned_cols=32 Identities=9% Similarity=0.089 Sum_probs=24.9
Q ss_pred CEEEEeecCCHHHHHHHHHHHHHhcCCCCEEE
Q 021587 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIF 142 (310)
Q Consensus 111 ~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~ 142 (310)
++|+++.|..+..+++.+.+.+.+...+..+.
T Consensus 44 ~~vii~~D~D~~G~~~~~~~~~~~~~~~~~~~ 75 (79)
T cd01029 44 RTVILAFDNDEAGKKAAARALELLLALGGRVR 75 (79)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 78999999999998888888777765444443
No 130
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=27.92 E-value=3.6e+02 Score=25.01 Aligned_cols=72 Identities=6% Similarity=0.103 Sum_probs=36.1
Q ss_pred HHHHHHHhhcCCCcEEEEEEEcC-ChHHHHHHHhccCCCCEEEECCCCCCchhhhhcccCCCCcHHHHHHhhCCCCceEE
Q 021587 185 LQKFLDTCSQSKVMVDTVLIESD-LVAKAILDLIPVLNIRKLVVGTTKSSLRVLRKSKSGRISGMADHILQTAPETCEIK 263 (310)
Q Consensus 185 L~~~~~~~~~~gV~ve~~vveG~-~~aeaIve~A~e~~aDLIVMGSrG~g~~~l~r~~s~llGSVA~~Vl~~Ap~~CpVl 263 (310)
+.++.+.+.+.++++.....+.. . +..+++.+.+.++|+||+ .-|.|. +.. +...+..... ..|+-
T Consensus 21 ~~~i~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~d~ivv-~GGDGT--l~~--------v~~~l~~~~~-~~~lg 87 (293)
T TIGR00147 21 LREVIMLLREEGMEIHVRVTWEKGD-AARYVEEARKFGVDTVIA-GGGDGT--INE--------VVNALIQLDD-IPALG 87 (293)
T ss_pred HHHHHHHHHHCCCEEEEEEecCccc-HHHHHHHHHhcCCCEEEE-ECCCCh--HHH--------HHHHHhcCCC-CCcEE
Confidence 33444455566777665444332 3 344555444556776655 334455 333 2344443221 13666
Q ss_pred EEcCCc
Q 021587 264 VVCEGK 269 (310)
Q Consensus 264 VV~~~k 269 (310)
++|-|.
T Consensus 88 iiP~Gt 93 (293)
T TIGR00147 88 ILPLGT 93 (293)
T ss_pred EEcCcC
Confidence 788665
No 131
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=27.51 E-value=79 Score=26.76 Aligned_cols=50 Identities=22% Similarity=0.131 Sum_probs=31.5
Q ss_pred HHHHHHHhccCCCCEEEECCCC-----CCc--hhhhhcccCCCCcHHHHHHhhCCCCceEEEEcCCc
Q 021587 210 AKAILDLIPVLNIRKLVVGTTK-----SSL--RVLRKSKSGRISGMADHILQTAPETCEIKVVCEGK 269 (310)
Q Consensus 210 aeaIve~A~e~~aDLIVMGSrG-----~g~--~~l~r~~s~llGSVA~~Vl~~Ap~~CpVlVV~~~k 269 (310)
.+.|.+++++++++.||||-.- .+. ...+. .+..+-+.-. +||..+.+..
T Consensus 43 ~~~l~~~i~~~~i~~iVvGlP~~~~G~~~~~~~~v~~--------f~~~L~~~~~--~~v~~~DEr~ 99 (138)
T PRK00109 43 WDRLEKLIKEWQPDGLVVGLPLNMDGTEGPRTERARK--------FANRLEGRFG--LPVVLVDERL 99 (138)
T ss_pred HHHHHHHHHHhCCCEEEEeccCCCCCCcCHHHHHHHH--------HHHHHHHHhC--CCEEEEcCCc
Confidence 6788889999999999999331 121 01122 2455544444 8888776644
No 132
>TIGR00646 MG010 DNA primase-related protein. The DNA primase DnaG of E. coli and its apparent orthologs in other eubacterial species are approximately 600 residues in length. Within this set, a conspicuous outlier in percent identity, as seen in a UPGMA difference tree, is the branch containing the Mycoplasmas. This lineage is also unique in containing the small, DNA primase-related protein modelled by this alignment, which is homologous to the central third of DNA primase. Several small regions of sequence similarity specifically to Mycoplasma sequences rather than to all DnaG homologs suggests that the divergence of this protein from DnaG post-dated the separation of bacterial lineages. The function of this DNA primase-related protein is unknown.
Probab=26.95 E-value=1.3e+02 Score=27.85 Aligned_cols=35 Identities=9% Similarity=0.057 Sum_probs=29.3
Q ss_pred CCEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEE
Q 021587 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLI 144 (310)
Q Consensus 110 ~~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LV 144 (310)
.++|+++.|+.+..++|...+++.+...+-.+.++
T Consensus 154 ~~~Iil~~D~D~AG~~Aa~r~~~~L~~~G~~v~vv 188 (218)
T TIGR00646 154 IEKIFICFDNDFAGKNAAANLEEILKKAGFITKVI 188 (218)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 36899999999999999999999987667665544
No 133
>PRK11914 diacylglycerol kinase; Reviewed
Probab=26.84 E-value=1.1e+02 Score=28.69 Aligned_cols=66 Identities=11% Similarity=0.084 Sum_probs=34.8
Q ss_pred HHhhcCCCcEEEEEEEcCChHHHHHHHhccCCCCEEEECCCCCCchhhhhcccCCCCcHHHHHHhhCCCCceEEEEcCCc
Q 021587 190 DTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRVLRKSKSGRISGMADHILQTAPETCEIKVVCEGK 269 (310)
Q Consensus 190 ~~~~~~gV~ve~~vveG~~~aeaIve~A~e~~aDLIVMGSrG~g~~~l~r~~s~llGSVA~~Vl~~Ap~~CpVlVV~~~k 269 (310)
+.+++.++++.....+...-+..+++.+.+.++|+||+. -|.|. +... +..+.. .. .|+-|+|-|-
T Consensus 33 ~~l~~~g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~-GGDGT--i~ev--------v~~l~~-~~--~~lgiiP~GT 98 (306)
T PRK11914 33 ARLHHRGVDVVEIVGTDAHDARHLVAAALAKGTDALVVV-GGDGV--ISNA--------LQVLAG-TD--IPLGIIPAGT 98 (306)
T ss_pred HHHHHcCCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEE-CCchH--HHHH--------hHHhcc-CC--CcEEEEeCCC
Confidence 344455666654444322125677766666778866543 24454 3332 333332 23 6788888544
No 134
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=26.73 E-value=98 Score=29.64 Aligned_cols=71 Identities=10% Similarity=0.046 Sum_probs=43.8
Q ss_pred hcCCCcEEEEEEEcCChHHHHHHHhccCCCCEEEECCCCCCchhhhhcccCCCCcHHHHHHhhCCCCceEEEEcCCc
Q 021587 193 SQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRVLRKSKSGRISGMADHILQTAPETCEIKVVCEGK 269 (310)
Q Consensus 193 ~~~gV~ve~~vveG~~~aeaIve~A~e~~aDLIVMGSrG~g~~~l~r~~s~llGSVA~~Vl~~Ap~~CpVlVV~~~k 269 (310)
++.+..+-..-+....-..++++.|++.+..+|+..+.+.-. +..+ ..+......+.++++ +||.+-=++-
T Consensus 14 ~~~~yaV~AfNv~n~e~~~avi~AAee~~sPvIlq~~~~~~~--~~g~--~~~~~~~~~~A~~~~--VPValHLDH~ 84 (284)
T PRK12857 14 EKGGYAVGAFNCNNMEIVQAIVAAAEAEKSPVIIQASQGAIK--YAGI--EYISAMVRTAAEKAS--VPVALHLDHG 84 (284)
T ss_pred HHcCCeEEEEEeCCHHHHHHHHHHHHHhCCCEEEEechhHhh--hCCH--HHHHHHHHHHHHHCC--CCEEEECCCC
Confidence 344444443334444558899999999999999999886411 0100 012334556677776 8988765544
No 135
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=26.64 E-value=1e+02 Score=26.36 Aligned_cols=97 Identities=12% Similarity=0.112 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEEEEecCCCcCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEE
Q 021587 122 SSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVMVDT 201 (310)
Q Consensus 122 ~S~~AL~wAl~lA~~~ga~L~LVHVi~~~~~ip~~~g~ip~~~~~~e~~e~~~~~~~e~a~elL~~~~~~~~~~gV~ve~ 201 (310)
.+.+||+-|++....++.++.++.++.... |.. . ..........-+.. .+...+.............
T Consensus 3 ~aA~Al~eal~~~~~~~~~v~v~D~~~~~~--p~~---------~-~~~~~~Y~~~~~~~-~ly~~~y~~~~~~~~~~~~ 69 (169)
T PF06925_consen 3 SAARALAEALERRRGPDAEVEVVDFLEEAS--PWL---------R-RLIRKAYLFMVRHA-PLYGWLYRWTDKRRPRSKF 69 (169)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEEehHHhhC--hHH---------H-HHHHHHHHHHHHHH-HHHHHHHHhcCCCccchHH
Confidence 466788888876544678888888876421 110 0 11112222222333 4444444333221110000
Q ss_pred EEEEcCChHHHHHHHhccCCCCEEEECCCCC
Q 021587 202 VLIESDLVAKAILDLIPVLNIRKLVVGTTKS 232 (310)
Q Consensus 202 ~vveG~~~aeaIve~A~e~~aDLIVMGSrG~ 232 (310)
.-.......+.|.++.++++.|+|| .+|-.
T Consensus 70 ~~~~~~~~~~~l~~~l~~~~PD~II-sThp~ 99 (169)
T PF06925_consen 70 LSALSRLFARRLIRLLREFQPDLII-STHPF 99 (169)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCEEE-ECCcc
Confidence 0001122356788899999999665 45543
No 136
>PRK05406 LamB/YcsF family protein; Provisional
Probab=26.47 E-value=1.3e+02 Score=28.31 Aligned_cols=57 Identities=12% Similarity=0.080 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcEEEEEEEc---------CChHHHHHHHhccCCCCEEEECCCCC
Q 021587 176 QETGKRRQLLQKFLDTCSQSKVMVDTVLIES---------DLVAKAILDLIPVLNIRKLVVGTTKS 232 (310)
Q Consensus 176 ~~~e~a~elL~~~~~~~~~~gV~ve~~vveG---------~~~aeaIve~A~e~~aDLIVMGSrG~ 232 (310)
+++......+..+..+|+..|.++..+--+| ..++++|++.++..+.+|+++|-.|.
T Consensus 83 el~~~v~yQigAL~~~a~~~g~~l~hVKPHGALYN~~~~d~~~a~av~~ai~~~~~~l~l~~~~~s 148 (246)
T PRK05406 83 ELYALVLYQIGALQAIARAAGGRVSHVKPHGALYNMAAKDPALADAVAEAVAAVDPSLILVGLAGS 148 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeEEeCccHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEecCCh
Confidence 3445556667777788888888877544343 35788999999999999999997764
No 137
>PHA02031 putative DnaG-like primase
Probab=26.46 E-value=97 Score=29.54 Aligned_cols=37 Identities=8% Similarity=-0.038 Sum_probs=30.0
Q ss_pred CCEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEE
Q 021587 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHV 146 (310)
Q Consensus 110 ~~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHV 146 (310)
-++|+++.|+.+..++|...|++++...+-.+.++..
T Consensus 206 ~~~Vil~fDgD~AG~~Aa~ra~~~l~~~~~~v~vv~l 242 (266)
T PHA02031 206 CPRVLIFLDGDPAGVDGSAGAMRRLRPLLIEGQVIIT 242 (266)
T ss_pred CCCEEEEeCCCHHHHHHHHHHHHHHHHcCCceEEEEC
Confidence 3799999999999999999999998766655554443
No 138
>PRK00861 putative lipid kinase; Reviewed
Probab=26.20 E-value=2.6e+02 Score=26.23 Aligned_cols=59 Identities=12% Similarity=0.174 Sum_probs=33.5
Q ss_pred CcEEEEEEEcCChHHHHHHHhccCCCCEEEECCCCCCchhhhhcccCCCCcHHHHHHhhCCCCceEEEEcCCc
Q 021587 197 VMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRVLRKSKSGRISGMADHILQTAPETCEIKVVCEGK 269 (310)
Q Consensus 197 V~ve~~vveG~~~aeaIve~A~e~~aDLIVMGSrG~g~~~l~r~~s~llGSVA~~Vl~~Ap~~CpVlVV~~~k 269 (310)
.+++....+...-+.++++.+.+.+.|+||+ .-|.|. +.. |...++.+ . +|+-++|-|-
T Consensus 33 ~~~~~~~t~~~~~a~~~a~~~~~~~~d~vv~-~GGDGT--l~e--------vv~~l~~~-~--~~lgviP~GT 91 (300)
T PRK00861 33 MDLDIYLTTPEIGADQLAQEAIERGAELIIA-SGGDGT--LSA--------VAGALIGT-D--IPLGIIPRGT 91 (300)
T ss_pred CceEEEEccCCCCHHHHHHHHHhcCCCEEEE-ECChHH--HHH--------HHHHHhcC-C--CcEEEEcCCc
Confidence 4555444433323678887777778887654 334454 333 34455432 2 6888888654
No 139
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=26.14 E-value=1.1e+02 Score=29.29 Aligned_cols=72 Identities=10% Similarity=0.072 Sum_probs=44.7
Q ss_pred hhcCCCcEEEEEEEcCChHHHHHHHhccCCCCEEEECCCCCCchhhhhcccCCCCcHHHHHHhhCCCCceEEEEcCCc
Q 021587 192 CSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRVLRKSKSGRISGMADHILQTAPETCEIKVVCEGK 269 (310)
Q Consensus 192 ~~~~gV~ve~~vveG~~~aeaIve~A~e~~aDLIVMGSrG~g~~~l~r~~s~llGSVA~~Vl~~Ap~~CpVlVV~~~k 269 (310)
+++.+..+-..-+.+.....++++.|++.+..+|+.-+.+.-. +..+ ..+........++++ +||.+-=++.
T Consensus 13 A~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~--~~g~--~~~~~~~~~~a~~~~--VPValHLDH~ 84 (284)
T PRK12737 13 AQAEGYAVPAFNIHNLETLQVVVETAAELRSPVILAGTPGTFS--YAGT--DYIVAIAEVAARKYN--IPLALHLDHH 84 (284)
T ss_pred HHHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCccHHh--hCCH--HHHHHHHHHHHHHCC--CCEEEECCCC
Confidence 3444544444334444568999999999999999988875411 0110 012344566777887 8988765543
No 140
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=26.13 E-value=3.1e+02 Score=26.67 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=26.7
Q ss_pred CCCEEEECCCCC---CchhhhhcccCCCCcHHHHHHhhCCCCceEEEEcCCc
Q 021587 221 NIRKLVVGTTKS---SLRVLRKSKSGRISGMADHILQTAPETCEIKVVCEGK 269 (310)
Q Consensus 221 ~aDLIVMGSrG~---g~~~l~r~~s~llGSVA~~Vl~~Ap~~CpVlVV~~~k 269 (310)
++|.+++|+++- |. ++. +.|.-...++.+.. ..||++++.-.
T Consensus 187 ~vd~VivGad~I~~nG~-lvn-----kiGT~~lA~~A~e~-~~Pf~v~aesy 231 (301)
T COG1184 187 RVDKVLVGADAILANGA-LVN-----KIGTSPLALAAREL-RVPFYVVAESY 231 (301)
T ss_pred hCCEEEECccceecCCc-EEe-----ccchHHHHHHHHHh-CCCEEEEeeee
Confidence 489999999974 33 122 35655555544433 28999998644
No 141
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=26.05 E-value=5.4e+02 Score=23.95 Aligned_cols=92 Identities=15% Similarity=0.207 Sum_probs=50.8
Q ss_pred EEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEecCCCcCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 021587 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDT 191 (310)
Q Consensus 112 kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~~~~~ip~~~g~ip~~~~~~e~~e~~~~~~~e~a~elL~~~~~~ 191 (310)
|+++=+-|.+.|-.|+-||++.- -.-+.|+++.+...- .+ +...+ +. . +.++ .
T Consensus 2 k~~aL~SGGKDS~~Al~~a~~~G---~eV~~Ll~~~p~~~d-S~-m~H~~----n~------------~----~~~~--~ 54 (223)
T COG2102 2 KVIALYSGGKDSFYALYLALEEG---HEVVYLLTVKPENGD-SY-MFHTP----NL------------E----LAEL--Q 54 (223)
T ss_pred cEEEEEecCcHHHHHHHHHHHcC---CeeEEEEEEecCCCC-ee-eeecc----ch------------H----HHHH--H
Confidence 56677788889988887776532 234567777765430 00 00011 00 0 0111 1
Q ss_pred hhcCCCcEEEEEEEc---CChHHHHHHHhccCCCCEEEECCCC
Q 021587 192 CSQSKVMVDTVLIES---DLVAKAILDLIPVLNIRKLVVGTTK 231 (310)
Q Consensus 192 ~~~~gV~ve~~vveG---~~~aeaIve~A~e~~aDLIVMGSrG 231 (310)
++..|+........| .. .+.+.++....++|-||.|.=-
T Consensus 55 Ae~~gi~l~~~~~~g~~e~e-ve~L~~~l~~l~~d~iv~GaI~ 96 (223)
T COG2102 55 AEAMGIPLVTFDTSGEEERE-VEELKEALRRLKVDGIVAGAIA 96 (223)
T ss_pred HHhcCCceEEEecCccchhh-HHHHHHHHHhCcccEEEEchhh
Confidence 223355554443333 23 4677777888889999999764
No 142
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=26.03 E-value=1.6e+02 Score=28.49 Aligned_cols=44 Identities=16% Similarity=0.210 Sum_probs=26.2
Q ss_pred HHHHHHhhcCCCcEEEEEEEcCC---hHHHHHHHhccCCCCEEE-ECC
Q 021587 186 QKFLDTCSQSKVMVDTVLIESDL---VAKAILDLIPVLNIRKLV-VGT 229 (310)
Q Consensus 186 ~~~~~~~~~~gV~ve~~vveG~~---~aeaIve~A~e~~aDLIV-MGS 229 (310)
+++.+.+++.++.+...+..+.+ ..+.+++.+++.++|.|| +|.
T Consensus 39 ~~v~~~l~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG 86 (349)
T cd08550 39 PRFEAALAKSIIVVDVIVFGGECSTEEVVKALCGAEEQEADVIIGVGG 86 (349)
T ss_pred HHHHHHHHhcCCeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 34444445556655544444442 234567788888999887 663
No 143
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=25.95 E-value=1.3e+02 Score=24.38 Aligned_cols=44 Identities=5% Similarity=-0.024 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCCcEEEEEEEcCChHHHHHHHhccCCCCEEEECCC
Q 021587 185 LQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT 230 (310)
Q Consensus 185 L~~~~~~~~~~gV~ve~~vveG~~~aeaIve~A~e~~aDLIVMGSr 230 (310)
+.-+..+++..|+++. ..-...+.+.+++.+.++++|.|+|...
T Consensus 16 ~~~~~~~l~~~G~~vi--~lG~~vp~e~~~~~a~~~~~d~V~iS~~ 59 (122)
T cd02071 16 AKVIARALRDAGFEVI--YTGLRQTPEEIVEAAIQEDVDVIGLSSL 59 (122)
T ss_pred HHHHHHHHHHCCCEEE--ECCCCCCHHHHHHHHHHcCCCEEEEccc
No 144
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=25.92 E-value=6.3e+02 Score=24.74 Aligned_cols=34 Identities=12% Similarity=0.165 Sum_probs=23.4
Q ss_pred EEEEEEEcC-ChHHHHHHHhccCCCCEEEECCCCC
Q 021587 199 VDTVLIESD-LVAKAILDLIPVLNIRKLVVGTTKS 232 (310)
Q Consensus 199 ve~~vveG~-~~aeaIve~A~e~~aDLIVMGSrG~ 232 (310)
++.+++.+. +.+..|++.|++.+++.+.+|+.+.
T Consensus 235 a~vVvv~~~~~~~~~l~~~a~~~g~~~~wigs~~w 269 (403)
T cd06361 235 VNVIVVFARQFHVFLLFNKAIERNINKVWIASDNW 269 (403)
T ss_pred CeEEEEEeChHHHHHHHHHHHHhCCCeEEEEECcc
Confidence 344444443 2356778888888999999998875
No 145
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=25.75 E-value=86 Score=27.07 Aligned_cols=25 Identities=12% Similarity=0.129 Sum_probs=13.7
Q ss_pred HHHHHHHhccCCCCEEEECCCCCCc
Q 021587 210 AKAILDLIPVLNIRKLVVGTTKSSL 234 (310)
Q Consensus 210 aeaIve~A~e~~aDLIVMGSrG~g~ 234 (310)
.+.|.+++++++.|+|++|..+...
T Consensus 52 ~~~l~~~i~~~kP~vI~v~g~~~~s 76 (150)
T PF14639_consen 52 MERLKKFIEKHKPDVIAVGGNSRES 76 (150)
T ss_dssp HHHHHHHHHHH--SEEEE--SSTHH
T ss_pred HHHHHHHHHHcCCeEEEEcCCChhH
Confidence 3555666677788888886555533
No 146
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=25.73 E-value=4.7e+02 Score=23.14 Aligned_cols=51 Identities=10% Similarity=0.042 Sum_probs=32.6
Q ss_pred EcCChHHHHHHHhccCCCCEEEEC----CCCCCchhhhhcccCCCCcHHHHHHhhCCCCceEEEEcCC
Q 021587 205 ESDLVAKAILDLIPVLNIRKLVVG----TTKSSLRVLRKSKSGRISGMADHILQTAPETCEIKVVCEG 268 (310)
Q Consensus 205 eG~~~aeaIve~A~e~~aDLIVMG----SrG~g~~~l~r~~s~llGSVA~~Vl~~Ap~~CpVlVV~~~ 268 (310)
.... ++..++.+.+..+|+|+|. -++.+. + .+...+.+..| .|+|+|+-..
T Consensus 32 ~~~~-~~~~~~~~~~~~pDlvLlDl~~~l~~~~g--~---------~~i~~i~~~~p-~~~iivlt~~ 86 (207)
T PRK15411 32 DIET-VDDLAIACDSLRPSVVFINEDCFIHDASN--S---------QRIKQIINQHP-NTLFIVFMAI 86 (207)
T ss_pred ecCC-HHHHHHHHhccCCCEEEEeCcccCCCCCh--H---------HHHHHHHHHCC-CCeEEEEECC
Confidence 3445 5666677788889999999 444433 1 13456666555 4888888543
No 147
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=25.49 E-value=1.1e+02 Score=28.43 Aligned_cols=34 Identities=24% Similarity=0.306 Sum_probs=23.1
Q ss_pred CCCCCCEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEE
Q 021587 106 GTQEEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHV 146 (310)
Q Consensus 106 ~~~~~~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHV 146 (310)
....-++|++++|.++ .++++|++ .++.+++.|=
T Consensus 32 ~~~~v~~I~~alD~t~---~vi~~Ai~----~~~dlIitHH 65 (249)
T TIGR00486 32 GNEEVKKVVVAVDASE---SVADEAVR----LGADLIITHH 65 (249)
T ss_pred CCcccCEEEEEecCCH---HHHHHHHH----CCCCEEEEcC
Confidence 3446789999999976 34555554 3677777773
No 148
>PRK13059 putative lipid kinase; Reviewed
Probab=25.18 E-value=2.6e+02 Score=26.29 Aligned_cols=69 Identities=7% Similarity=-0.026 Sum_probs=34.4
Q ss_pred HHHHHhhcCCCcEEEEEEE-cCChHHHHHHHhccCCCCEEEECCCCCCchhhhhcccCCCCcHHHHHHhhCCCCceEEEE
Q 021587 187 KFLDTCSQSKVMVDTVLIE-SDLVAKAILDLIPVLNIRKLVVGTTKSSLRVLRKSKSGRISGMADHILQTAPETCEIKVV 265 (310)
Q Consensus 187 ~~~~~~~~~gV~ve~~vve-G~~~aeaIve~A~e~~aDLIVMGSrG~g~~~l~r~~s~llGSVA~~Vl~~Ap~~CpVlVV 265 (310)
+++..+.+.+.++...... .+. . ++...+.+.++|.||+ .-|.|. +.. |++.++++- ..+|+-|+
T Consensus 23 ~i~~~l~~~g~~~~~~~~~~~~~-~-~~~~~~~~~~~d~vi~-~GGDGT--v~e--------vv~gl~~~~-~~~~lgvi 88 (295)
T PRK13059 23 KVIRIHQEKGYLVVPYRISLEYD-L-KNAFKDIDESYKYILI-AGGDGT--VDN--------VVNAMKKLN-IDLPIGIL 88 (295)
T ss_pred HHHHHHHHCCcEEEEEEccCcch-H-HHHHHHhhcCCCEEEE-ECCccH--HHH--------HHHHHHhcC-CCCcEEEE
Confidence 3444455566665533232 333 2 3333333456775543 334555 332 355565432 23788888
Q ss_pred cCCc
Q 021587 266 CEGK 269 (310)
Q Consensus 266 ~~~k 269 (310)
|-|-
T Consensus 89 P~GT 92 (295)
T PRK13059 89 PVGT 92 (295)
T ss_pred CCCC
Confidence 8654
No 149
>PRK12569 hypothetical protein; Provisional
Probab=25.15 E-value=1.4e+02 Score=28.13 Aligned_cols=57 Identities=11% Similarity=0.080 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcEEEEEEEc---------CChHHHHHHHhccCCCCEEEECCCCC
Q 021587 176 QETGKRRQLLQKFLDTCSQSKVMVDTVLIES---------DLVAKAILDLIPVLNIRKLVVGTTKS 232 (310)
Q Consensus 176 ~~~e~a~elL~~~~~~~~~~gV~ve~~vveG---------~~~aeaIve~A~e~~aDLIVMGSrG~ 232 (310)
++++.....+..+..+|+..|.++..+--+| ..++++|++.+++.+.+|+++|..+.
T Consensus 86 el~~~v~yQigaL~~~~~~~g~~l~hVKPHGALYN~~~~d~~la~av~~ai~~~~~~l~l~~~~~s 151 (245)
T PRK12569 86 ELVNDVLYQLGALREFARAHGVRLQHVKPHGALYMHAARDEALARLLVEALARLDPLLILYCMDGS 151 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeEEecCCHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEecCCc
Confidence 3445556667777788888888877543333 35788999999999999999997665
No 150
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=25.12 E-value=7.5e+02 Score=25.30 Aligned_cols=38 Identities=16% Similarity=0.038 Sum_probs=25.0
Q ss_pred CEEEEeecCCHHHHHHHHHHHHHhcC--CCCEEEEEEEec
Q 021587 111 DIIYVAVGKSQSSMDALSWTLRHAVN--PSTLIFLIHVFP 148 (310)
Q Consensus 111 ~kILVAVDgSe~S~~AL~wAl~lA~~--~ga~L~LVHVi~ 148 (310)
..++|+.-|.+.|..+|..+.+.+.. .....-.|||+.
T Consensus 14 ~p~vV~fSGGKDSta~L~Lv~~Al~~lp~e~~~k~v~VI~ 53 (447)
T TIGR03183 14 IPWVVGYSGGKDSTAVLQLIWNALAALPAEQRTKKIHVIS 53 (447)
T ss_pred CceEEEeCCCHHHHHHHHHHHHHHHhccccccCcceEEEE
Confidence 45789999999999999877754432 122233456653
No 151
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=24.72 E-value=1.3e+02 Score=28.66 Aligned_cols=72 Identities=10% Similarity=-0.035 Sum_probs=44.8
Q ss_pred hhcCCCcEEEEEEEcCChHHHHHHHhccCCCCEEEECCCCCCchhhhhcccCCCCcHHHHHHhhCCCCceEEEEcCCc
Q 021587 192 CSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRVLRKSKSGRISGMADHILQTAPETCEIKVVCEGK 269 (310)
Q Consensus 192 ~~~~gV~ve~~vveG~~~aeaIve~A~e~~aDLIVMGSrG~g~~~l~r~~s~llGSVA~~Vl~~Ap~~CpVlVV~~~k 269 (310)
+++.+..+-..-+....-..++++.|++.+.-+|+.-+.+.-. ...+ ..++.......+.++ +||.+-=++-
T Consensus 13 A~~~~yaV~Afn~~n~e~~~avi~aAe~~~~Pvii~~~~~~~~--~~~~--~~~~~~~~~~a~~~~--vpv~lHlDH~ 84 (281)
T PRK06806 13 ANQENYGVGAFSVANMEMVMGAIKAAEELNSPIILQIAEVRLN--HSPL--HLIGPLMVAAAKQAK--VPVAVHFDHG 84 (281)
T ss_pred HHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchhc--cCCh--HHHHHHHHHHHHHCC--CCEEEECCCC
Confidence 3344554444334444457999999999999999999886421 1111 023344566777776 8887765543
No 152
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=24.62 E-value=1.7e+02 Score=29.47 Aligned_cols=33 Identities=24% Similarity=0.351 Sum_probs=22.1
Q ss_pred EEEEcCChHHHHHHHhc----cCCCCEEEECCCCCCc
Q 021587 202 VLIESDLVAKAILDLIP----VLNIRKLVVGTTKSSL 234 (310)
Q Consensus 202 ~vveG~~~aeaIve~A~----e~~aDLIVMGSrG~g~ 234 (310)
..+.|...+..|++..+ ..++|+||+|+-|-+.
T Consensus 164 ~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs~ 200 (432)
T TIGR00237 164 TLVQGEGAVQSIVESIELANTKNECDVLIVGRGGGSL 200 (432)
T ss_pred ccccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCCH
Confidence 44567766677765443 2347999999887654
No 153
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=24.28 E-value=74 Score=31.76 Aligned_cols=43 Identities=5% Similarity=0.069 Sum_probs=32.3
Q ss_pred CCCCEEEECCCCCCchhhhhcccCCCCcHHHHHHhhCCCC-ceEEEEcCCc
Q 021587 220 LNIRKLVVGTTKSSLRVLRKSKSGRISGMADHILQTAPET-CEIKVVCEGK 269 (310)
Q Consensus 220 ~~aDLIVMGSrG~g~~~l~r~~s~llGSVA~~Vl~~Ap~~-CpVlVV~~~k 269 (310)
.++||||.|--..-. +. +.|.+...|.+.|+.+ +||++|+-..
T Consensus 282 ~~ADlVITGEG~~D~---Qt----l~GK~p~~Va~~A~~~~vPviai~G~v 325 (375)
T TIGR00045 282 KDADLVITGEGRLDR---QS----LMGKAPVGVAKRAKKYGVPVIAIAGSL 325 (375)
T ss_pred cCCCEEEECCCcccc---cc----cCCchHHHHHHHHHHhCCeEEEEeccc
Confidence 479999999865533 22 4788888888888655 8999998654
No 154
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=24.08 E-value=1.9e+02 Score=27.92 Aligned_cols=50 Identities=14% Similarity=0.069 Sum_probs=32.2
Q ss_pred ccCCCCEEEECCCCC---CchhhhhcccCCCCcHHHHHHhhCCCCceEEEEcCCcccccc
Q 021587 218 PVLNIRKLVVGTTKS---SLRVLRKSKSGRISGMADHILQTAPETCEIKVVCEGKEVIDQ 274 (310)
Q Consensus 218 ~e~~aDLIVMGSrG~---g~~~l~r~~s~llGSVA~~Vl~~Ap~~CpVlVV~~~k~v~~~ 274 (310)
+..++|++++|+.+- |. .+. +.|+-...++.+.. ..||+|+++-.-...+
T Consensus 194 ~~~~vd~VlvGAd~v~~nG~-v~n-----k~GT~~lA~~Ak~~-~vPv~V~a~s~K~~~~ 246 (303)
T TIGR00524 194 QKGEIDAVIVGADRIARNGD-VAN-----KIGTYQLAVLAKEF-RIPFFVAAPLSTFDTK 246 (303)
T ss_pred cccCCCEEEEcccEEecCCC-EeE-----hhhHHHHHHHHHHh-CCCEEEecccccccCC
Confidence 345799999999974 32 122 35665566665554 3999999875544444
No 155
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=23.98 E-value=37 Score=33.38 Aligned_cols=12 Identities=33% Similarity=0.482 Sum_probs=5.0
Q ss_pred chhhhhhhhhhc
Q 021587 49 SEIEEEEEEEEN 60 (310)
Q Consensus 49 ~~~~~~~~~~~~ 60 (310)
++.|||.|+.|.
T Consensus 364 ~s~e~e~d~~G~ 375 (407)
T KOG2130|consen 364 SSDEEESDDNGD 375 (407)
T ss_pred CCccccccccCc
Confidence 334444444443
No 156
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=23.51 E-value=2.1e+02 Score=29.26 Aligned_cols=90 Identities=14% Similarity=0.125 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEcCChHHHHHHHhccCCCCEEEECCCCC----CchhhhhcccCC-----
Q 021587 174 MAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKS----SLRVLRKSKSGR----- 244 (310)
Q Consensus 174 ~~~~~e~a~elL~~~~~~~~~~gV~ve~~vveG~~~aeaIve~A~e~~aDLIVMGSrG~----g~~~l~r~~s~l----- 244 (310)
++...+....+|.++.+.+.+.|..+-. .....+..+-|-+.+.+++.+.||++..=- ++ +.++...
T Consensus 56 k~~~lenLd~~l~~~~~~v~~~Gg~vy~-A~~aedA~~ii~~iv~~k~~k~vVKsKSmvseEIgl---n~~Le~~G~ev~ 131 (459)
T COG1139 56 KLHVLENLDEYLEQLEENVTRNGGHVYF-AKDAEDAREIIGEIVGEKNGKKVVKSKSMVSEEIGL---NHYLEEKGIEVW 131 (459)
T ss_pred HHHHHHhHHHHHHHHHHHHHHcCCEEEE-eCCHHHHHHHHHHHHhhccCcEEEEecchhHHHhhh---HHHHHHcCCeEE
Confidence 3334455566667777777777765542 112334344555889999999999987632 32 2221001
Q ss_pred CCcHHHHHHhhCCCCceEEEEcCC
Q 021587 245 ISGMADHILQTAPETCEIKVVCEG 268 (310)
Q Consensus 245 lGSVA~~Vl~~Ap~~CpVlVV~~~ 268 (310)
=-...+++++-+.+ -|.+||-+-
T Consensus 132 ETDLGE~IlQl~~~-~PsHIV~PA 154 (459)
T COG1139 132 ETDLGELILQLAGE-PPSHIVAPA 154 (459)
T ss_pred EccHHHHHHHhcCC-CCcceeccc
Confidence 12346778877743 566666543
No 157
>PRK13337 putative lipid kinase; Reviewed
Probab=23.51 E-value=4.4e+02 Score=24.72 Aligned_cols=70 Identities=9% Similarity=0.067 Sum_probs=36.9
Q ss_pred HHHHHhhcCCCcEEEEEEE-cCChHHHHHHHhccCCCCEEEECCCCCCchhhhhcccCCCCcHHHHHHhhCCCCceEEEE
Q 021587 187 KFLDTCSQSKVMVDTVLIE-SDLVAKAILDLIPVLNIRKLVVGTTKSSLRVLRKSKSGRISGMADHILQTAPETCEIKVV 265 (310)
Q Consensus 187 ~~~~~~~~~gV~ve~~vve-G~~~aeaIve~A~e~~aDLIVMGSrG~g~~~l~r~~s~llGSVA~~Vl~~Ap~~CpVlVV 265 (310)
+....+.+.+++++.+..+ .++ +..+++.+.+.+.|+||+. -|.|. +.. |.+.++.. ....|+-|+
T Consensus 23 ~~~~~l~~~~~~~~~~~t~~~~~-a~~~a~~~~~~~~d~vvv~-GGDGT--l~~--------vv~gl~~~-~~~~~lgii 89 (304)
T PRK13337 23 DVLQKLEQAGYETSAHATTGPGD-ATLAAERAVERKFDLVIAA-GGDGT--LNE--------VVNGIAEK-ENRPKLGII 89 (304)
T ss_pred HHHHHHHHcCCEEEEEEecCCCC-HHHHHHHHHhcCCCEEEEE-cCCCH--HHH--------HHHHHhhC-CCCCcEEEE
Confidence 3334455567776655554 334 5677766556667765542 24444 333 23444432 212577888
Q ss_pred cCCc
Q 021587 266 CEGK 269 (310)
Q Consensus 266 ~~~k 269 (310)
|-|.
T Consensus 90 P~GT 93 (304)
T PRK13337 90 PVGT 93 (304)
T ss_pred CCcC
Confidence 8654
No 158
>PLN02828 formyltetrahydrofolate deformylase
Probab=23.50 E-value=6.4e+02 Score=23.93 Aligned_cols=45 Identities=13% Similarity=0.001 Sum_probs=30.9
Q ss_pred eeeeecCCCCCCCCEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEE
Q 021587 98 SFDVANGNGTQEEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHV 146 (310)
Q Consensus 98 s~~~~~~~~~~~~~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHV 146 (310)
+|.++.. ....||+|-+-++.+...+|-++.+.- ..+++|.+|-.
T Consensus 61 ~~~~~~~---~~~~riavlvSg~g~nl~~ll~~~~~g-~l~~eI~~ViS 105 (268)
T PLN02828 61 VVRVPGL---DPKYKIAVLASKQDHCLIDLLHRWQDG-RLPVDITCVIS 105 (268)
T ss_pred EEEEccC---CCCcEEEEEEcCCChhHHHHHHhhhcC-CCCceEEEEEe
Confidence 5555422 346799999999999999999987543 23456554444
No 159
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=23.42 E-value=1.2e+02 Score=21.86 Aligned_cols=26 Identities=4% Similarity=-0.156 Sum_probs=21.9
Q ss_pred CEEEEeecCCHHHHHHHHHHHHHhcC
Q 021587 111 DIIYVAVGKSQSSMDALSWTLRHAVN 136 (310)
Q Consensus 111 ~kILVAVDgSe~S~~AL~wAl~lA~~ 136 (310)
.+|+++.|.++..+.+.+++.+.+..
T Consensus 48 ~~Iii~~D~D~~G~~~~~~i~~~l~~ 73 (76)
T smart00493 48 KEVILATDPDREGEAIAWKLAELLKP 73 (76)
T ss_pred CEEEEEcCCChhHHHHHHHHHHHhhh
Confidence 57999999999999999888777643
No 160
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=23.40 E-value=1.3e+02 Score=28.88 Aligned_cols=71 Identities=10% Similarity=0.054 Sum_probs=45.0
Q ss_pred hcCCCcEEEEEEEcCChHHHHHHHhccCCCCEEEECCCCCCchhhhhcccCCCCcHHHHHHhhCCCCceEEEEcCCc
Q 021587 193 SQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRVLRKSKSGRISGMADHILQTAPETCEIKVVCEGK 269 (310)
Q Consensus 193 ~~~gV~ve~~vveG~~~aeaIve~A~e~~aDLIVMGSrG~g~~~l~r~~s~llGSVA~~Vl~~Ap~~CpVlVV~~~k 269 (310)
++.+..+-..-+....-..++++.|++.+.-+|+.-+.+.-. +..+ ..+......+.+.++ +||.+-=++.
T Consensus 12 ~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~--~~~~--~~~~~~~~~~a~~~~--VPValHLDHg 82 (282)
T TIGR01858 12 QAGGYAVPAFNIHNLETIQAVVETAAEMRSPVILAGTPGTFK--HAGT--EYIVALCSAASTTYN--MPLALHLDHH 82 (282)
T ss_pred HHcCCeEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCccHHh--hCCH--HHHHHHHHHHHHHCC--CCEEEECCCC
Confidence 344544443333344458999999999999999999886411 0111 012345667788887 8988765543
No 161
>PRK06850 hypothetical protein; Provisional
Probab=23.34 E-value=6.6e+02 Score=26.21 Aligned_cols=24 Identities=8% Similarity=0.015 Sum_probs=19.4
Q ss_pred CEEEEeecCCHHHHHHHHHHHHHh
Q 021587 111 DIIYVAVGKSQSSMDALSWTLRHA 134 (310)
Q Consensus 111 ~kILVAVDgSe~S~~AL~wAl~lA 134 (310)
..++|+.-|.+.|..+|..+.+.+
T Consensus 35 ~P~vV~fSGGKDStavL~Lv~~Al 58 (507)
T PRK06850 35 RPWVIGYSGGKDSTAVLQLVWNAL 58 (507)
T ss_pred CCeEEeCCCCchHHHHHHHHHHHH
Confidence 457899999999999998877543
No 162
>PRK06801 hypothetical protein; Provisional
Probab=23.31 E-value=1.3e+02 Score=28.84 Aligned_cols=72 Identities=1% Similarity=-0.117 Sum_probs=45.6
Q ss_pred hhcCCCcEEEEEEEcCChHHHHHHHhccCCCCEEEECCCCCCchhhhhcccCCCCcHHHHHHhhCCCCceEEEEcCCc
Q 021587 192 CSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRVLRKSKSGRISGMADHILQTAPETCEIKVVCEGK 269 (310)
Q Consensus 192 ~~~~gV~ve~~vveG~~~aeaIve~A~e~~aDLIVMGSrG~g~~~l~r~~s~llGSVA~~Vl~~Ap~~CpVlVV~~~k 269 (310)
+++.+..+-..-+..-....+|++.|++.+.-+|+.-+.+.-. +..+ ..+......+.++++ .||.+--++-
T Consensus 13 A~~~~yaV~Afn~~n~e~~~avi~AAe~~~~PvIl~~~~~~~~--~~~~--~~~~~~~~~~a~~~~--vpV~lHlDH~ 84 (286)
T PRK06801 13 ARKHGYALGAFNVLDSHFLRALFAAAKQERSPFIINIAEVHFK--YISL--ESLVEAVKFEAARHD--IPVVLNLDHG 84 (286)
T ss_pred HHHCCceEEEEeeCCHHHHHHHHHHHHHHCCCEEEEeCcchhh--cCCH--HHHHHHHHHHHHHCC--CCEEEECCCC
Confidence 3344554443334344457899999999999999999887522 1111 023445667777887 7887765543
No 163
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=22.89 E-value=5.2e+02 Score=24.57 Aligned_cols=86 Identities=13% Similarity=0.138 Sum_probs=51.9
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEecCCCcCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 021587 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKF 188 (310)
Q Consensus 109 ~~~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~~~~~ip~~~g~ip~~~~~~e~~e~~~~~~~e~a~elL~~~ 188 (310)
...||.|-+-|+.+...||-.+.+.- ..+++|. .|+.... .+..
T Consensus 83 ~~~ki~vl~Sg~g~nl~~l~~~~~~g-~l~~~i~--~visn~~----------------------------~~~~----- 126 (280)
T TIGR00655 83 KLKRVAILVSKEDHCLGDLLWRWYSG-ELDAEIA--LVISNHE----------------------------DLRS----- 126 (280)
T ss_pred CCcEEEEEEcCCChhHHHHHHHHHcC-CCCcEEE--EEEEcCh----------------------------hHHH-----
Confidence 45799999999999999998876432 2344444 4443210 0111
Q ss_pred HHHhhcCCCcEEEEEEE--c-CChHHHHHHHhccCCCCEEEECCCCC
Q 021587 189 LDTCSQSKVMVDTVLIE--S-DLVAKAILDLIPVLNIRKLVVGTTKS 232 (310)
Q Consensus 189 ~~~~~~~gV~ve~~vve--G-~~~aeaIve~A~e~~aDLIVMGSrG~ 232 (310)
.+++.|+.+...-.. . ..-...+++..+++++|+||+..-.+
T Consensus 127 --~A~~~gIp~~~~~~~~~~~~~~e~~~~~~l~~~~~Dlivlagym~ 171 (280)
T TIGR00655 127 --LVERFGIPFHYIPATKDNRVEHEKRQLELLKQYQVDLVVLAKYMQ 171 (280)
T ss_pred --HHHHhCCCEEEcCCCCcchhhhHHHHHHHHHHhCCCEEEEeCchh
Confidence 144557766532211 0 11235788888889999999987654
No 164
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=22.68 E-value=1.6e+02 Score=24.75 Aligned_cols=36 Identities=11% Similarity=0.104 Sum_probs=22.8
Q ss_pred hhcCCCcEEEEEEEcCChHHHHHHHhccC--CCCEEEEC
Q 021587 192 CSQSKVMVDTVLIESDLVAKAILDLIPVL--NIRKLVVG 228 (310)
Q Consensus 192 ~~~~gV~ve~~vveG~~~aeaIve~A~e~--~aDLIVMG 228 (310)
+++.|+++....+..++ .+.|.+..++. ++|+||+-
T Consensus 36 l~~~G~~v~~~~~v~Dd-~~~i~~~l~~~~~~~DliItt 73 (144)
T TIGR00177 36 LEEAGFNVSRLGIVPDD-PEEIREILRKAVDEADVVLTT 73 (144)
T ss_pred HHHCCCeEEEEeecCCC-HHHHHHHHHHHHhCCCEEEEC
Confidence 33457877766666676 46666544432 79988875
No 165
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=22.67 E-value=1.8e+02 Score=27.94 Aligned_cols=47 Identities=13% Similarity=0.188 Sum_probs=30.2
Q ss_pred CCCEEEECCCCC---CchhhhhcccCCCCcHHHHHHhhCCCCceEEEEcCCcccccc
Q 021587 221 NIRKLVVGTTKS---SLRVLRKSKSGRISGMADHILQTAPETCEIKVVCEGKEVIDQ 274 (310)
Q Consensus 221 ~aDLIVMGSrG~---g~~~l~r~~s~llGSVA~~Vl~~Ap~~CpVlVV~~~k~v~~~ 274 (310)
.+|++++|+.+- |. .+. +.|+-...++.+.. ..||+|+++-.-...+
T Consensus 183 ~vd~VivGad~v~~nG~-v~n-----kiGT~~lA~~Ak~~-~vPv~V~a~~~K~~~~ 232 (301)
T TIGR00511 183 EVDHVVVGADAITANGA-LIN-----KIGTSQLALAAREA-RVPFMVAAETYKFHPK 232 (301)
T ss_pred hCCEEEECccEEecCCC-EEE-----HHhHHHHHHHHHHh-CCCEEEEcccceecCC
Confidence 399999999973 32 122 34665555555554 3999999875544443
No 166
>PRK05920 aromatic acid decarboxylase; Validated
Probab=22.61 E-value=1.8e+02 Score=26.45 Aligned_cols=35 Identities=9% Similarity=0.028 Sum_probs=26.4
Q ss_pred CCEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEE
Q 021587 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIH 145 (310)
Q Consensus 110 ~~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVH 145 (310)
.+||+++|-||-.+.++++..-.+.+ .+.+|+++-
T Consensus 3 ~krIllgITGsiaa~ka~~lvr~L~~-~g~~V~vi~ 37 (204)
T PRK05920 3 MKRIVLAITGASGAIYGVRLLECLLA-ADYEVHLVI 37 (204)
T ss_pred CCEEEEEEeCHHHHHHHHHHHHHHHH-CCCEEEEEE
Confidence 47999999999999999987765544 466655443
No 167
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=22.56 E-value=1.7e+02 Score=26.53 Aligned_cols=34 Identities=15% Similarity=0.093 Sum_probs=25.6
Q ss_pred CCEEEEeecCCHHHHH-HHHHHHHHhcCCCCEEEEE
Q 021587 110 EDIIYVAVGKSQSSMD-ALSWTLRHAVNPSTLIFLI 144 (310)
Q Consensus 110 ~~kILVAVDgSe~S~~-AL~wAl~lA~~~ga~L~LV 144 (310)
.+||+++|-||-.+.+ +++.+-.+ .+.|.+|+++
T Consensus 5 ~k~IllgVTGsiaa~k~a~~lir~L-~k~G~~V~vv 39 (196)
T PRK08305 5 GKRIGFGLTGSHCTYDEVMPEIEKL-VDEGAEVTPI 39 (196)
T ss_pred CCEEEEEEcCHHHHHHHHHHHHHHH-HhCcCEEEEE
Confidence 4789999999999999 58877554 4457665544
No 168
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=22.53 E-value=3.4e+02 Score=21.24 Aligned_cols=66 Identities=9% Similarity=0.116 Sum_probs=36.6
Q ss_pred HHHHHHHhhcCCCcEEEEEEEcCChHHHHHHHhccCCCCEEEECCCCCCchhhhhcccCCCCcHHHHHHhhCCCCceEEE
Q 021587 185 LQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRVLRKSKSGRISGMADHILQTAPETCEIKV 264 (310)
Q Consensus 185 L~~~~~~~~~~gV~ve~~vveG~~~aeaIve~A~e~~aDLIVMGSrG~g~~~l~r~~s~llGSVA~~Vl~~Ap~~CpVlV 264 (310)
+++..+.+++.|++++.... + ...+-+.. .++|+|+++.+=+.. +.++ -... .+..+||.+
T Consensus 16 ~~ki~~~~~~~~~~~~v~~~---~-~~~~~~~~--~~~Diil~~Pqv~~~--~~~i--------~~~~---~~~~~pv~~ 76 (96)
T cd05564 16 VKKMKKAAEKRGIDAEIEAV---P-ESELEEYI--DDADVVLLGPQVRYM--LDEV--------KKKA---AEYGIPVAV 76 (96)
T ss_pred HHHHHHHHHHCCCceEEEEe---c-HHHHHHhc--CCCCEEEEChhHHHH--HHHH--------HHHh---ccCCCcEEE
Confidence 34555566777887664332 3 23344444 368999999874433 2222 1111 222389998
Q ss_pred EcCCc
Q 021587 265 VCEGK 269 (310)
Q Consensus 265 V~~~k 269 (310)
++...
T Consensus 77 I~~~~ 81 (96)
T cd05564 77 IDMMD 81 (96)
T ss_pred cChHh
Confidence 87643
No 169
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=22.36 E-value=1.6e+02 Score=26.91 Aligned_cols=44 Identities=14% Similarity=0.130 Sum_probs=25.5
Q ss_pred HHHHHHHhhcCCCcEEEEEEEcCChHHHHHHHhccCCCCEEEECCC
Q 021587 185 LQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT 230 (310)
Q Consensus 185 L~~~~~~~~~~gV~ve~~vveG~~~aeaIve~A~e~~aDLIVMGSr 230 (310)
++++++...+.+..+...+ .|+ +...=+....+.++|.+|+|+.
T Consensus 154 I~~l~~~~~~~~~~~~I~v-dGG-I~~eni~~l~~aGAd~vVvGSa 197 (220)
T PRK08883 154 LRAVRKMIDESGRDIRLEI-DGG-VKVDNIREIAEAGADMFVAGSA 197 (220)
T ss_pred HHHHHHHHHhcCCCeeEEE-ECC-CCHHHHHHHHHcCCCEEEEeHH
Confidence 3444444444455444333 455 3444455555679999999975
No 170
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=22.29 E-value=3e+02 Score=28.87 Aligned_cols=69 Identities=7% Similarity=0.099 Sum_probs=39.9
Q ss_pred HHHHHHHhhcCCCcEEEEEEEcCChHH---HHHHHhccCCCCEEEECCCCCCchhhhhcccCCCCcHHHHHHhhCCCCce
Q 021587 185 LQKFLDTCSQSKVMVDTVLIESDLVAK---AILDLIPVLNIRKLVVGTTKSSLRVLRKSKSGRISGMADHILQTAPETCE 261 (310)
Q Consensus 185 L~~~~~~~~~~gV~ve~~vveG~~~ae---aIve~A~e~~aDLIVMGSrG~g~~~l~r~~s~llGSVA~~Vl~~Ap~~Cp 261 (310)
++++...++..|+.++..+.-...-.+ .+++.+++.+++.||.++-+.+. + +.-|..+.. +|
T Consensus 426 ~~~~~~~l~~~g~~~~~~v~sahr~~~~~~~~~~~~~~~~~~v~i~~ag~~~~--l-----------~~~~a~~t~--~p 490 (577)
T PLN02948 426 MKDAAEILDSFGVPYEVTIVSAHRTPERMFSYARSAHSRGLQVIIAGAGGAAH--L-----------PGMVASMTP--LP 490 (577)
T ss_pred HHHHHHHHHHcCCCeEEEEECCccCHHHHHHHHHHHHHCCCCEEEEEcCcccc--c-----------hHHHhhccC--CC
Confidence 344555556667877766653322123 33445566678877777655444 1 223444555 99
Q ss_pred EEEEcCC
Q 021587 262 IKVVCEG 268 (310)
Q Consensus 262 VlVV~~~ 268 (310)
|+=||-.
T Consensus 491 vi~vp~~ 497 (577)
T PLN02948 491 VIGVPVK 497 (577)
T ss_pred EEEcCCC
Confidence 9988864
No 171
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=22.17 E-value=64 Score=32.78 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=20.1
Q ss_pred HHHHHHHhccCCCCEEEECCCC
Q 021587 210 AKAILDLIPVLNIRKLVVGTTK 231 (310)
Q Consensus 210 aeaIve~A~e~~aDLIVMGSrG 231 (310)
.+.|+++|+++++||+|+|.--
T Consensus 52 ~~~lv~fA~~~~idl~vVGPE~ 73 (428)
T COG0151 52 HEALVAFAKEKNVDLVVVGPEA 73 (428)
T ss_pred HHHHHHHHHHcCCCEEEECCcH
Confidence 5999999999999999999763
No 172
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=22.09 E-value=1.4e+02 Score=28.56 Aligned_cols=77 Identities=17% Similarity=0.181 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhhcCCCcEEEEEEEcCChHHHHHHHhccCCCCEEEECCCCCCch-hhhhcccCCCCcHHHHHHhhCCCCc
Q 021587 182 RQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLR-VLRKSKSGRISGMADHILQTAPETC 260 (310)
Q Consensus 182 ~elL~~~~~~~~~~gV~ve~~vveG~~~aeaIve~A~e~~aDLIVMGSrG~g~~-~l~r~~s~llGSVA~~Vl~~Ap~~C 260 (310)
+++|+++ ++.+..+-..-+.+....+++++.|++.+..+|+..+.+.-.. -+.. +......+.++++ +
T Consensus 7 k~iL~~A----~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~-----~~~~~~~~a~~~~--V 75 (286)
T PRK12738 7 KYLLQDA----QANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEE-----IYALCSAYSTTYN--M 75 (286)
T ss_pred HHHHHHH----HHCCceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHH-----HHHHHHHHHHHCC--C
Confidence 4445443 3445444433344445689999999999999999987764110 0121 2345667777887 8
Q ss_pred eEEEEcCCc
Q 021587 261 EIKVVCEGK 269 (310)
Q Consensus 261 pVlVV~~~k 269 (310)
||.+-=++-
T Consensus 76 PValHLDHg 84 (286)
T PRK12738 76 PLALHLDHH 84 (286)
T ss_pred CEEEECCCC
Confidence 988776544
No 173
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.
Probab=21.68 E-value=5.5e+02 Score=23.12 Aligned_cols=32 Identities=13% Similarity=0.187 Sum_probs=23.8
Q ss_pred EEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEe
Q 021587 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVF 147 (310)
Q Consensus 112 kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi 147 (310)
|++|.+-|.-.|--++-||.+.. .+|+.||+-
T Consensus 1 Kavvl~SGG~DSt~~l~~~~~~~----~~v~al~~~ 32 (209)
T PF06508_consen 1 KAVVLFSGGLDSTTCLYWAKKEG----YEVYALTFD 32 (209)
T ss_dssp EEEEE--SSHHHHHHHHHHHHH-----SEEEEEEEE
T ss_pred CEEEEeCCCHHHHHHHHHHHHcC----CeEEEEEEE
Confidence 57888888888988888887654 688888885
No 174
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=21.60 E-value=3e+02 Score=25.76 Aligned_cols=66 Identities=11% Similarity=0.103 Sum_probs=34.8
Q ss_pred hhcCCCcEEEEEEEc-CChHHHHHHHhccCCCCEEEECCCCCCchhhhhcccCCCCcHHHHHHhhCC-CCceEEEEcCCc
Q 021587 192 CSQSKVMVDTVLIES-DLVAKAILDLIPVLNIRKLVVGTTKSSLRVLRKSKSGRISGMADHILQTAP-ETCEIKVVCEGK 269 (310)
Q Consensus 192 ~~~~gV~ve~~vveG-~~~aeaIve~A~e~~aDLIVMGSrG~g~~~l~r~~s~llGSVA~~Vl~~Ap-~~CpVlVV~~~k 269 (310)
+.+.+++++....+. ++ +..+++.+.+.+.|.||+ .-|.|. +.. |.+.++.+-. ..+|+-|+|-|.
T Consensus 23 l~~~g~~~~v~~t~~~~~-a~~~a~~~~~~~~d~vv~-~GGDGT--i~e--------v~ngl~~~~~~~~~~lgiiP~GT 90 (293)
T TIGR03702 23 LRDEGIQLHVRVTWEKGD-AQRYVAEALALGVSTVIA-GGGDGT--LRE--------VATALAQIRDDAAPALGLLPLGT 90 (293)
T ss_pred HHHCCCeEEEEEecCCCC-HHHHHHHHHHcCCCEEEE-EcCChH--HHH--------HHHHHHhhCCCCCCcEEEEcCCc
Confidence 445577766544432 44 677776665566776543 234454 332 3444543211 125788888654
No 175
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=21.50 E-value=7.4e+02 Score=24.72 Aligned_cols=35 Identities=17% Similarity=0.073 Sum_probs=23.1
Q ss_pred EEEEEEEcC-ChHHHHHHHhccCCCCEEEECCCCCC
Q 021587 199 VDTVLIESD-LVAKAILDLIPVLNIRKLVVGTTKSS 233 (310)
Q Consensus 199 ve~~vveG~-~~aeaIve~A~e~~aDLIVMGSrG~g 233 (310)
++.+++.+. .-+..|++.|.+.+.+.+.+|+.+..
T Consensus 233 a~vVvl~~~~~~~~~ll~~a~~~g~~~~wigs~~~~ 268 (458)
T cd06375 233 ARVVVLFTRSEDARELLAAAKRLNASFTWVASDGWG 268 (458)
T ss_pred CEEEEEecChHHHHHHHHHHHHcCCcEEEEEecccc
Confidence 344444432 23566778888889998889888753
No 176
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=21.41 E-value=7.3e+02 Score=23.80 Aligned_cols=67 Identities=16% Similarity=0.204 Sum_probs=38.6
Q ss_pred hcCCCcEEEEEEEcCChHHHHHHHhccCCCCEEEECCCCC---CchhhhhcccCCCCcHHHHHHhhCCCCceEEEEcCCc
Q 021587 193 SQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKS---SLRVLRKSKSGRISGMADHILQTAPETCEIKVVCEGK 269 (310)
Q Consensus 193 ~~~gV~ve~~vveG~~~aeaIve~A~e~~aDLIVMGSrG~---g~~~l~r~~s~llGSVA~~Vl~~Ap~~CpVlVV~~~k 269 (310)
.+.|+++.. +....++ .+. + .+|++++|+++- |. .+. +.|+-...++.+.. ..||+|+++-.
T Consensus 168 ~~~GI~vtl--I~Dsav~-~~m---~--~vd~VivGAd~v~~nG~-v~n-----kiGT~~~A~~Ak~~-~vPv~V~a~~~ 232 (310)
T PRK08535 168 AEYGIPVTL--IVDSAVR-YFM---K--DVDKVVVGADAITANGA-VIN-----KIGTSQIALAAHEA-RVPFMVAAETY 232 (310)
T ss_pred HHCCCCEEE--EehhHHH-HHH---H--hCCEEEECccEEecCCC-EEe-----HHhHHHHHHHHHHh-CCCEEEecccc
Confidence 345887763 3222222 222 2 399999999974 32 122 34665555555554 38999998755
Q ss_pred ccccc
Q 021587 270 EVIDQ 274 (310)
Q Consensus 270 ~v~~~ 274 (310)
-...+
T Consensus 233 K~~~~ 237 (310)
T PRK08535 233 KFSPK 237 (310)
T ss_pred eecCC
Confidence 44433
No 177
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=21.13 E-value=5.7e+02 Score=24.35 Aligned_cols=86 Identities=10% Similarity=0.065 Sum_probs=51.6
Q ss_pred CCCEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEecCCCcCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 021587 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKF 188 (310)
Q Consensus 109 ~~~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~~~~~ip~~~g~ip~~~~~~e~~e~~~~~~~e~a~elL~~~ 188 (310)
...||.|-+-++.....||-.|.+.-. .++++.+|-.-.+ . +
T Consensus 88 ~~~ri~vl~Sg~g~nl~al~~~~~~~~-~~~~i~~visn~~------------------------------~-------~ 129 (286)
T PRK13011 88 ARPKVLIMVSKFDHCLNDLLYRWRIGE-LPMDIVGVVSNHP------------------------------D-------L 129 (286)
T ss_pred cCceEEEEEcCCcccHHHHHHHHHcCC-CCcEEEEEEECCc------------------------------c-------H
Confidence 457899999999888999888865432 3455554433111 0 1
Q ss_pred HHHhhcCCCcEEEEEEE-c--CChHHHHHHHhccCCCCEEEECCCCC
Q 021587 189 LDTCSQSKVMVDTVLIE-S--DLVAKAILDLIPVLNIRKLVVGTTKS 232 (310)
Q Consensus 189 ~~~~~~~gV~ve~~vve-G--~~~aeaIve~A~e~~aDLIVMGSrG~ 232 (310)
...+++.|+.+...-.. . ......+++..+++++|+||+..-++
T Consensus 130 ~~lA~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlagy~~ 176 (286)
T PRK13011 130 EPLAAWHGIPFHHFPITPDTKPQQEAQVLDVVEESGAELVVLARYMQ 176 (286)
T ss_pred HHHHHHhCCCEEEeCCCcCchhhhHHHHHHHHHHhCcCEEEEeChhh
Confidence 11144557766532111 1 11234678888889999999987654
No 178
>cd07187 YvcK_like family of mostly uncharacterized proteins similar to B.subtilis YvcK. One member of this protein family, YvcK from Bacillus subtilis, has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and the pentose phosphate pathway. In general, this family of mostly uncharacterized proteins is related to the CofD-like protein family. CofD has been characterized as a 2-phospho-L-lactate transferase involved in F420 biosynthesis. This family appears to have the same conserved phosphate binding site as the other family in this hierarchy, but a different substrate binding site.
Probab=20.94 E-value=2.3e+02 Score=27.42 Aligned_cols=64 Identities=17% Similarity=0.253 Sum_probs=40.3
Q ss_pred CcEEEEEEEcC--ChHHHHHHHhccCCCCEEEECCCCCCchhhhhcccCCCCcHHHHHHhhCCCCceEEEEcCC
Q 021587 197 VMVDTVLIESD--LVAKAILDLIPVLNIRKLVVGTTKSSLRVLRKSKSGRISGMADHILQTAPETCEIKVVCEG 268 (310)
Q Consensus 197 V~ve~~vveG~--~~aeaIve~A~e~~aDLIVMGSrG~g~~~l~r~~s~llGSVA~~Vl~~Ap~~CpVlVV~~~ 268 (310)
-.++.+.+.+. .+....+++++ ++|+||+|--..-.+.+-.+ +...+++.+. .++ |+++.|++-
T Consensus 151 ~~I~~v~l~~~~~~~~~~a~~AI~--~AD~Iv~gPGSlyTSI~P~L---lv~gI~eAi~-~s~--a~kV~v~N~ 216 (308)
T cd07187 151 SPIKRVFLEPPDPKANPEALEAIE--EADLIVYGPGSLYTSILPNL---LVKGIAEAIR-ASK--APKVYICNL 216 (308)
T ss_pred CCceEEEEECCCCCCCHHHHHHHH--hCCEEEECCCccHHHhhhhc---CchhHHHHHH-hCC--CCEEEEecC
Confidence 45555555543 45567777776 58999999876522113333 5677777664 555 888888863
No 179
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=20.69 E-value=1.3e+02 Score=25.60 Aligned_cols=46 Identities=7% Similarity=-0.002 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEEEEEcCChHHHHHHHhccCCCCEEEECCC
Q 021587 180 KRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT 230 (310)
Q Consensus 180 ~a~elL~~~~~~~~~~gV~ve~~vveG~~~aeaIve~A~e~~aDLIVMGSr 230 (310)
...+++..+ ++..|+++...= -+.+.+.+++.|.++++|+|.|.+.
T Consensus 16 iGk~iv~~~---l~~~GfeVi~LG--~~v~~e~~v~aa~~~~adiVglS~l 61 (134)
T TIGR01501 16 VGNKILDHA---FTNAGFNVVNLG--VLSPQEEFIKAAIETKADAILVSSL 61 (134)
T ss_pred HhHHHHHHH---HHHCCCEEEECC--CCCCHHHHHHHHHHcCCCEEEEecc
Confidence 334444443 345677655321 1345799999999999999999775
No 180
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=20.26 E-value=4.2e+02 Score=23.41 Aligned_cols=38 Identities=8% Similarity=0.006 Sum_probs=27.6
Q ss_pred HhhcCCCcEEEEEEEcCChHHHHHHHhccCCCCEEEECCC
Q 021587 191 TCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT 230 (310)
Q Consensus 191 ~~~~~gV~ve~~vveG~~~aeaIve~A~e~~aDLIVMGSr 230 (310)
.++..|.++. -+--+.+.+.|++.+.++++|+|.+...
T Consensus 105 ~l~~~G~~vi--~lG~~~p~~~l~~~~~~~~~d~v~lS~~ 142 (201)
T cd02070 105 MLEANGFEVI--DLGRDVPPEEFVEAVKEHKPDILGLSAL 142 (201)
T ss_pred HHHHCCCEEE--ECCCCCCHHHHHHHHHHcCCCEEEEecc
Confidence 3455677663 1212345899999999999999999875
No 181
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=20.23 E-value=3.3e+02 Score=27.03 Aligned_cols=65 Identities=12% Similarity=0.130 Sum_probs=46.1
Q ss_pred CCcEEEEEEEcC--------ChHHHHHHHhccCCCCEEEECCCC-CCchhhhhcccCCCCcHHHHHHhhCCCCceEEEEc
Q 021587 196 KVMVDTVLIESD--------LVAKAILDLIPVLNIRKLVVGTTK-SSLRVLRKSKSGRISGMADHILQTAPETCEIKVVC 266 (310)
Q Consensus 196 gV~ve~~vveG~--------~~aeaIve~A~e~~aDLIVMGSrG-~g~~~l~r~~s~llGSVA~~Vl~~Ap~~CpVlVV~ 266 (310)
+.++...++-|+ .+.+.|++.+++.++|++|-|-.= .+. +.. ..|.++..|-+.-. +||+.-.
T Consensus 47 ~~eIv~TiiCGDnyf~en~eea~~~i~~mv~~~~pD~viaGPaFnagr--YG~----acg~v~~aV~e~~~--IP~vtaM 118 (349)
T PF07355_consen 47 DAEIVATIICGDNYFNENKEEALKKILEMVKKLKPDVVIAGPAFNAGR--YGV----ACGEVAKAVQEKLG--IPVVTAM 118 (349)
T ss_pred CCEEEEEEEECcchhhhCHHHHHHHHHHHHHhcCCCEEEEcCCcCCch--HHH----HHHHHHHHHHHhhC--CCEEEEe
Confidence 355665666665 256788999999999999999752 233 222 36788888888776 8988765
Q ss_pred CC
Q 021587 267 EG 268 (310)
Q Consensus 267 ~~ 268 (310)
..
T Consensus 119 ~~ 120 (349)
T PF07355_consen 119 YE 120 (349)
T ss_pred cc
Confidence 43
No 182
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=20.13 E-value=43 Score=30.29 Aligned_cols=43 Identities=5% Similarity=0.168 Sum_probs=23.3
Q ss_pred HHHHHHHhhcCCCcEEEEEEEcCChHHHHHHHhccCCCCEEEECC
Q 021587 185 LQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGT 229 (310)
Q Consensus 185 L~~~~~~~~~~gV~ve~~vveG~~~aeaIve~A~e~~aDLIVMGS 229 (310)
++++++...+.+..+.. .+.|+ +...-+....+.++|.+|+|+
T Consensus 153 I~~l~~~~~~~~~~~~I-~vDGG-I~~~~~~~~~~aGad~~V~Gs 195 (201)
T PF00834_consen 153 IRELRKLIPENGLDFEI-EVDGG-INEENIKQLVEAGADIFVAGS 195 (201)
T ss_dssp HHHHHHHHHHHTCGSEE-EEESS-ESTTTHHHHHHHT--EEEESH
T ss_pred HHHHHHHHHhcCCceEE-EEECC-CCHHHHHHHHHcCCCEEEECH
Confidence 33444444444544442 34565 345555555567999999996
No 183
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=20.08 E-value=1.4e+02 Score=26.45 Aligned_cols=32 Identities=13% Similarity=0.096 Sum_probs=24.5
Q ss_pred EEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEE
Q 021587 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLI 144 (310)
Q Consensus 112 kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LV 144 (310)
||+|+|-||-.+.++++.+-.+. +.+.+|+++
T Consensus 1 ~illgvtGsiaa~ka~~lir~L~-~~g~~V~vv 32 (181)
T TIGR00421 1 RIVVAMTGASGVIYGIRLLEVLK-EAGVEVHLV 32 (181)
T ss_pred CEEEEEECHHHHHHHHHHHHHHH-HCCCEEEEE
Confidence 59999999999999999876654 456664443
Done!