BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021588
(310 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2V9B0|MY1R1_SOLTU Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1
Length = 297
Score = 167 bits (423), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 138/305 (45%), Positives = 169/305 (55%), Gaps = 41/305 (13%)
Query: 23 GGGSSGAGSEENGIMLFGVRVTEGSSSFRKSISMDNLSQFDQPQDSNA------------ 70
GGG G IMLFGVRV RKS+S+++LSQ++ P +N
Sbjct: 17 GGGFGGE------IMLFGVRVK--VDPMRKSVSLNDLSQYEHPNANNNNNGGDNNESSKV 68
Query: 71 --DAGYASDD--IVHASGRSRERKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTR 126
D GYAS D + H S RERKRGVPWTE+EH+LFLLGLQKVGKGDWRGISRNFVKTR
Sbjct: 69 AQDEGYASADDAVQHQSNSGRERKRGVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTR 128
Query: 127 TPTQVASHAQKYFLRRFNQNKRRRRSSLFDITASSTDTFMGSTMEEEQARHQETITVPLP 186
TPTQVASHAQKYFLRR N N+RRRRSSLFDIT S S M E+ +++ I V P
Sbjct: 129 TPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDSV-----SVMPIEEVENKQEIPVVAP 183
Query: 187 QPQLNRHPGGFPVSAYPVKHSAVVLPFTGEKSMGNLTIGPSNKPRTSPKLIRPIPIHPVP 246
FPV+ ++ P +KS T+ + +S L+ P+P+ +P
Sbjct: 184 ATLPTTKTNAFPVAP---TVGPIIFPVQIDKSREYPTLLRHDHGNSS-MLVGPVPMFSMP 239
Query: 247 PSSKLGGLNLNQKATHVDVDTLPLSLKLSTPSSSSDEQSAQTPHSSAAFQAMSS-GDSNS 305
S LN N +T P SL L S Q++ T HS A+ MSS + S
Sbjct: 240 NPSTAIDLNANHNST-----IEPSSLSLRLSLSLDQGQASSTRHS--AYNVMSSFSNGES 292
Query: 306 IISVA 310
II VA
Sbjct: 293 IIRVA 297
>sp|Q8S9H7|DIV_ANTMA Transcription factor DIVARICATA OS=Antirrhinum majus GN=DIVARICATA
PE=2 SV=1
Length = 307
Score = 120 bits (302), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 68/79 (86%), Gaps = 2/79 (2%)
Query: 82 ASGR--SRERKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 139
+SGR +ERK+GVPWTE+EH+LFL+GL+K GKGDWR ISRNFV TRTPTQVASHAQKYF
Sbjct: 119 SSGRPSEQERKKGVPWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYF 178
Query: 140 LRRFNQNKRRRRSSLFDIT 158
+R+ + K +RR+S+ DIT
Sbjct: 179 IRQLSGGKDKRRASIHDIT 197
>sp|Q869R9|MYBJ_DICDI Myb-like protein J OS=Dictyostelium discoideum GN=mybJ PE=3 SV=1
Length = 734
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 48/68 (70%), Gaps = 3/68 (4%)
Query: 83 SGRSRERKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRR 142
+G+ K+G WT++EH FL G+Q GKG W+ I++ FV TRTPTQ+ SHAQKY+LR+
Sbjct: 369 TGKKTSLKQG--WTKEEHIRFLNGIQIHGKGAWKEIAQ-FVGTRTPTQIQSHAQKYYLRQ 425
Query: 143 FNQNKRRR 150
+ K +R
Sbjct: 426 KQETKNKR 433
>sp|Q54HX6|MYBI_DICDI Myb-like protein I OS=Dictyostelium discoideum GN=mybI PE=3 SV=1
Length = 977
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 85 RSRERKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLR 141
+S ++K+ WT +EH F+ L K G D + IS+ +V TR PTQV +HAQKYFLR
Sbjct: 165 QSEKKKQSRYWTPEEHSRFIEALSKYGHKDVKSISQ-YVSTRNPTQVRTHAQKYFLR 220
>sp|Q54Z40|MYBH_DICDI Myb-like protein H OS=Dictyostelium discoideum GN=mybH PE=3 SV=1
Length = 1217
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 92 GVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRFNQNKRRRR 151
PW+ +EH LFL ++K G+G+W+ IS +K+R Q+ +HA+ YF + QN +
Sbjct: 229 NTPWSNEEHELFLKAIEKYGRGNWKLIS-TLIKSRNTLQIKNHARIYFDKISQQNGPPSK 287
Query: 152 SSLFDI 157
++ ++
Sbjct: 288 KTIIEV 293
Score = 38.9 bits (89), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 95 WTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLR 141
WT++E RLF+ K+ D + I + VKT+T QV SHAQK+ L+
Sbjct: 153 WTKEEERLFVEAY-KLYDKDNKKIQEH-VKTKTILQVRSHAQKFALK 197
>sp|Q6R0H0|ASG4_ARATH Transcription factor ASG4 OS=Arabidopsis thaliana GN=ASG4 PE=2 SV=1
Length = 287
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 95 WTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLR 141
WTE EH FL L + DW+ I + FV ++T Q+ SHAQKYFL+
Sbjct: 64 WTEQEHDKFLEALHLFDR-DWKKI-KAFVGSKTVIQIRSHAQKYFLK 108
>sp|Q6R0H1|LHY_ARATH Protein LHY OS=Arabidopsis thaliana GN=LHY PE=1 SV=2
Length = 645
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 86 SRERKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLR 141
+++R+R WTEDEH FL L+ G+ W+ I + + T+T Q+ SHAQK+F +
Sbjct: 21 TKQRER---WTEDEHERFLEALRLYGRA-WQRIEEH-IGTKTAVQIRSHAQKFFTK 71
>sp|Q54IF9|MYBG_DICDI Myb-like protein G OS=Dictyostelium discoideum GN=mybG PE=3 SV=1
Length = 423
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 95 WTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLR 141
WT++EH+ FL L + DW+ I +FV ++T Q+ SHAQKYF++
Sbjct: 44 WTDEEHQKFLEALTLFDR-DWKKI-ESFVGSKTVIQIRSHAQKYFIK 88
>sp|P92973|CCA1_ARATH Protein CCA1 OS=Arabidopsis thaliana GN=CCA1 PE=1 SV=1
Length = 608
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 5/54 (9%)
Query: 86 SRERKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 139
+++R+R WTE+EH F+ L+ G+ W+ I + V T+T Q+ SHAQK+F
Sbjct: 21 TKQRER---WTEEEHNRFIEALRLYGRA-WQKIEEH-VATKTAVQIRSHAQKFF 69
>sp|Q86HX9|MYBK_DICDI Myb-like protein K OS=Dictyostelium discoideum GN=mybK PE=3 SV=1
Length = 894
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 95 WTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 139
WT +EH FL +Q+ G D+ I++ FV+TR QV +H Y
Sbjct: 657 WTSEEHNKFLEAVQQFGIKDYHAIAK-FVQTRNHHQVRTHVNTYL 700
>sp|Q69Z66|MYSM1_MOUSE Histone H2A deubiquitinase MYSM1 OS=Mus musculus GN=Mysm1 PE=2 SV=2
Length = 819
Score = 40.0 bits (92), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 93 VPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 139
V WT +E LF GL K G+ W I+ +K+RT QV S+A++YF
Sbjct: 116 VKWTVEEKELFEQGLAKFGRR-WTKIA-TLLKSRTVLQVKSYARQYF 160
>sp|Q5VVJ2|MYSM1_HUMAN Histone H2A deubiquitinase MYSM1 OS=Homo sapiens GN=MYSM1 PE=1 SV=1
Length = 828
Score = 39.7 bits (91), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 93 VPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 139
V WT +E LF GL K G+ W IS+ + +RT QV S+A++YF
Sbjct: 119 VKWTIEEKELFEQGLAKFGRR-WTKISK-LIGSRTVLQVKSYARQYF 163
>sp|Q5RGA4|MYSM1_DANRE Histone H2A deubiquitinase MYSM1 OS=Danio rerio GN=mysm1 PE=2 SV=2
Length = 822
Score = 38.9 bits (89), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 95 WTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 139
W E+E LF GL + G+ W I++ + TRT QV S+A++YF
Sbjct: 102 WAEEEKELFEKGLAQFGRR-WTKIAK-LIGTRTVLQVKSYAKQYF 144
>sp|Q5F3F2|MYSM1_CHICK Histone H2A deubiquitinase MYSM1 OS=Gallus gallus GN=MYSM1 PE=2
SV=1
Length = 832
Score = 37.7 bits (86), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 93 VPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 139
+ WT +E LF GL K G+ W I++ + +RT QV S+A++YF
Sbjct: 120 LKWTSEEKELFEQGLVKYGRR-WTKIAK-LIGSRTVLQVKSYARQYF 164
>sp|Q6NRB5|TAD2B_XENLA Transcriptional adapter 2-beta OS=Xenopus laevis GN=tada2b PE=2
SV=1
Length = 420
Score = 36.2 bits (82), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 95 WTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFL 140
WT E +L L +++ G G+W ++ + +RTPT+V H ++
Sbjct: 70 WTSREEQLLLDAIEQFGFGNWEDMAAHVGASRTPTEVMEHYVTMYI 115
>sp|Q9LYP5|ARR21_ARATH Putative two-component response regulator ARR21 OS=Arabidopsis
thaliana GN=ARR21 PE=2 SV=3
Length = 613
Score = 35.8 bits (81), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Query: 89 RKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNF-----VKTRTPTQVASHAQKY--FLR 141
+K+ + WT+ H LFL ++ +G + + + V T VASH QKY FLR
Sbjct: 221 KKKKIQWTDSLHDLFLQAIRHIGLD--KAVPKKILAFMSVPYLTRENVASHLQKYRIFLR 278
Query: 142 R 142
R
Sbjct: 279 R 279
>sp|Q5RBN9|TAD2B_PONAB Transcriptional adapter 2-beta OS=Pongo abelii GN=TADA2B PE=2 SV=1
Length = 420
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 95 WTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFL 140
WT E +L L +++ G G+W ++ + +RTP +V H ++
Sbjct: 70 WTSREEQLLLDAIEQFGFGNWEDMAAHVGASRTPQEVMEHYVSMYI 115
>sp|Q86TJ2|TAD2B_HUMAN Transcriptional adapter 2-beta OS=Homo sapiens GN=TADA2B PE=1 SV=2
Length = 420
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 95 WTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFL 140
WT E +L L +++ G G+W ++ + +RTP +V H ++
Sbjct: 70 WTSREEQLLLDAIEQFGFGNWEDMAAHVGASRTPQEVMEHYVSMYI 115
>sp|Q15554|TERF2_HUMAN Telomeric repeat-binding factor 2 OS=Homo sapiens GN=TERF2 PE=1
SV=2
Length = 500
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 95 WTEDEHRLFLLGLQKVGKGDWRGISRNF 122
WT +E G+QK G+G+W IS+N+
Sbjct: 450 WTVEESEWVKAGVQKYGEGNWAAISKNY 477
>sp|Q02336|ADA2_YEAST Transcriptional adapter 2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=ADA2 PE=1 SV=1
Length = 434
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 95 WTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFL 140
W DE + G Q +G G+W+ I+ + + +R +V H KY+L
Sbjct: 65 WGADEELQLIKGAQTLGLGNWQDIA-DHIGSRGKEEVKEHYLKYYL 109
>sp|D2HNW6|RFX6_AILME DNA-binding protein RFX6 OS=Ailuropoda melanoleuca GN=RFX6 PE=3
SV=2
Length = 928
Score = 32.7 bits (73), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 48/116 (41%), Gaps = 26/116 (22%)
Query: 142 RFNQNKRRRRSSLFD------------ITASSTDTFM-----GSTMEEEQAR---HQETI 181
+FN +K + +L D TAS + F+ GST + + H ET
Sbjct: 539 QFNNDKEQELQNLLDKYMKNSDASKAAFTASPSSCFLANRNKGSTASSDTVKNESHVETA 598
Query: 182 TVPLPQPQLNRHPGGFPVSAYPVKHSAV-VLPFTGEKSMGNLTIGPSNKPRTSPKL 236
+PL + HPGGFP + +P +P TG+ + T G P SP +
Sbjct: 599 YLPLS----SSHPGGFPSALHPFPAGNTDTMPLTGQMELSQST-GHLMTPPISPAM 649
>sp|Q80TZ9|RERE_MOUSE Arginine-glutamic acid dipeptide repeats protein OS=Mus musculus
GN=Rere PE=1 SV=3
Length = 1558
Score = 32.7 bits (73), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 28/102 (27%)
Query: 21 AGGGGSSGAGSEENGIMLFGVRVTEGSSSFRKSISMDNLSQFDQPQDSNADAGYASDDIV 80
A G GS E+G + ++ R +++ L+ +S+ DAG A +V
Sbjct: 338 AAFAGMCDGGSTEDGCV----------AASRDDTTLNALNTL---HESSYDAGKALQRLV 384
Query: 81 HASGRSRERKRGVP------WTEDEHRLFLLGLQKVGKGDWR 116
K+ VP WTEDE + F+ GL++ GK +R
Sbjct: 385 ---------KKPVPKLIEKCWTEDEVKRFVKGLRQYGKNFFR 417
>sp|Q62901|RERE_RAT Arginine-glutamic acid dipeptide repeats protein OS=Rattus
norvegicus GN=Rere PE=2 SV=2
Length = 1559
Score = 32.7 bits (73), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 28/102 (27%)
Query: 21 AGGGGSSGAGSEENGIMLFGVRVTEGSSSFRKSISMDNLSQFDQPQDSNADAGYASDDIV 80
A G GS E+G + ++ R +++ L+ +S+ DAG A +V
Sbjct: 337 AAFAGMCDGGSTEDGCV----------AASRDDTTLNALNTL---HESSYDAGKALQRLV 383
Query: 81 HASGRSRERKRGVP------WTEDEHRLFLLGLQKVGKGDWR 116
K+ VP WTEDE + F+ GL++ GK +R
Sbjct: 384 ---------KKPVPKLIEKCWTEDEVKRFVKGLRQYGKNFFR 416
>sp|Q9P2R6|RERE_HUMAN Arginine-glutamic acid dipeptide repeats protein OS=Homo sapiens
GN=RERE PE=1 SV=2
Length = 1566
Score = 32.3 bits (72), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 28/102 (27%)
Query: 21 AGGGGSSGAGSEENGIMLFGVRVTEGSSSFRKSISMDNLSQFDQPQDSNADAGYASDDIV 80
A G GS E+G + ++ R +++ L+ +S DAG A +V
Sbjct: 338 AAFAGMCDGGSTEDGCV----------AASRDDTTLNALNTL---HESGYDAGKALQRLV 384
Query: 81 HASGRSRERKRGVP------WTEDEHRLFLLGLQKVGKGDWR 116
K+ VP WTEDE + F+ GL++ GK +R
Sbjct: 385 ---------KKPVPKLIEKCWTEDEVKRFVKGLRQYGKNFFR 417
>sp|Q7Y0W3|EHD1_ORYSI Two-component response regulator EHD1 OS=Oryza sativa subsp. indica
PE=2 SV=1
Length = 341
Score = 32.0 bits (71), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Query: 77 DDIVHASGRSRER----KRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNF-----VKTRT 127
DD+V+ +G + K + WT HR F+ + +G+ + + + VK T
Sbjct: 181 DDMVNYNGEITDIRDLGKSRLTWTTQLHRQFIAAVNHLGED--KAVPKKILGIMKVKHLT 238
Query: 128 PTQVASHAQKY 138
QVASH QKY
Sbjct: 239 REQVASHLQKY 249
>sp|Q7Y0W5|EHD1_ORYSJ Two-component response regulator EHD1 OS=Oryza sativa subsp.
japonica GN=EHD1 PE=1 SV=1
Length = 341
Score = 31.6 bits (70), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Query: 77 DDIVHASGRSRER----KRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNF-----VKTRT 127
DD+V+ +G + K + WT HR F+ + +G+ + + + VK T
Sbjct: 181 DDMVNYNGEITDIRDLGKSRLTWTTQLHRQFIAAVNHLGED--KAVPKKILGIMKVKHLT 238
Query: 128 PTQVASHAQKY 138
QVASH QKY
Sbjct: 239 REQVASHLQKY 249
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.128 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,760,451
Number of Sequences: 539616
Number of extensions: 5269312
Number of successful extensions: 15424
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 15278
Number of HSP's gapped (non-prelim): 179
length of query: 310
length of database: 191,569,459
effective HSP length: 117
effective length of query: 193
effective length of database: 128,434,387
effective search space: 24787836691
effective search space used: 24787836691
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)