Query 021588
Match_columns 310
No_of_seqs 217 out of 556
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 04:09:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021588.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021588hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01557 myb_SHAQKYF myb-like 99.7 5.1E-18 1.1E-22 126.3 5.8 53 90-142 1-57 (57)
2 PF00249 Myb_DNA-binding: Myb- 99.5 3.2E-14 6.9E-19 100.0 5.3 46 93-139 2-48 (48)
3 cd00167 SANT 'SWI3, ADA2, N-Co 99.2 2.5E-11 5.4E-16 80.2 5.3 45 94-139 1-45 (45)
4 smart00717 SANT SANT SWI3, AD 99.2 2.6E-11 5.6E-16 80.9 5.0 46 93-139 2-47 (49)
5 PF13921 Myb_DNA-bind_6: Myb-l 98.9 9.1E-10 2E-14 79.7 4.5 43 95-139 1-43 (60)
6 KOG0457 Histone acetyltransfer 98.9 1.1E-09 2.3E-14 108.9 5.2 49 94-143 74-122 (438)
7 PLN03212 Transcription repress 98.8 1E-08 2.3E-13 96.0 6.0 52 88-140 21-73 (249)
8 PLN03091 hypothetical protein; 98.7 1.2E-08 2.7E-13 101.9 5.0 52 87-139 9-61 (459)
9 KOG0048 Transcription factor, 98.5 1.3E-07 2.9E-12 86.2 4.0 47 92-139 9-56 (238)
10 COG5114 Histone acetyltransfer 98.3 5.4E-07 1.2E-11 88.0 4.4 47 94-141 65-111 (432)
11 PLN03212 Transcription repress 98.3 1.4E-06 3.1E-11 81.9 6.1 50 91-142 77-126 (249)
12 KOG0724 Zuotin and related mol 98.2 5.7E-07 1.2E-11 84.5 2.5 73 86-158 158-235 (335)
13 PLN03091 hypothetical protein; 98.2 3E-06 6.5E-11 85.2 6.6 49 92-142 67-115 (459)
14 COG5259 RSC8 RSC chromatin rem 98.1 2.2E-06 4.7E-11 86.7 4.4 42 93-136 280-321 (531)
15 KOG1279 Chromatin remodeling f 97.9 1.2E-05 2.7E-10 81.8 5.2 43 92-136 253-295 (506)
16 KOG0048 Transcription factor, 97.6 0.00011 2.4E-09 67.2 6.5 51 91-143 61-111 (238)
17 KOG0049 Transcription factor, 97.6 8.5E-05 1.8E-09 78.2 5.8 53 91-144 359-411 (939)
18 KOG4329 DNA-binding protein [G 97.4 0.00022 4.8E-09 71.0 5.0 49 92-144 277-325 (445)
19 PLN03162 golden-2 like transcr 97.0 0.0015 3.2E-08 65.6 6.4 58 87-145 232-293 (526)
20 KOG0049 Transcription factor, 96.9 0.0013 2.9E-08 69.6 5.3 47 90-137 410-456 (939)
21 KOG0050 mRNA splicing protein 96.4 0.0028 6E-08 65.6 3.6 49 90-139 5-53 (617)
22 PF13837 Myb_DNA-bind_4: Myb/S 96.0 0.017 3.8E-07 44.0 5.4 53 94-147 3-72 (90)
23 PF09111 SLIDE: SLIDE; InterP 95.4 0.031 6.7E-07 47.4 5.3 52 90-142 47-112 (118)
24 KOG4468 Polycomb-group transcr 95.1 0.03 6.6E-07 59.1 5.0 52 92-144 88-148 (782)
25 COG5118 BDP1 Transcription ini 94.9 0.043 9.2E-07 55.6 5.4 50 83-134 356-405 (507)
26 smart00426 TEA TEA domain. 94.9 0.031 6.6E-07 44.0 3.4 43 93-136 4-66 (68)
27 KOG4167 Predicted DNA-binding 94.9 0.037 8E-07 59.5 5.1 46 93-143 620-665 (907)
28 PF00098 zf-CCHC: Zinc knuckle 94.7 0.025 5.4E-07 33.7 2.0 17 3-19 1-17 (18)
29 COG5147 REB1 Myb superfamily p 94.3 0.025 5.4E-07 58.4 2.3 56 87-143 15-70 (512)
30 KOG0051 RNA polymerase I termi 94.3 0.055 1.2E-06 56.9 4.7 52 91-143 435-511 (607)
31 PLN03142 Probable chromatin-re 94.1 0.073 1.6E-06 58.9 5.4 51 92-143 823-874 (1033)
32 KOG0724 Zuotin and related mol 94.0 0.013 2.8E-07 55.5 -0.5 49 94-144 55-103 (335)
33 KOG3554 Histone deacetylase co 93.9 0.046 1E-06 56.6 3.2 51 89-143 282-332 (693)
34 PF14392 zf-CCHC_4: Zinc knuck 93.4 0.03 6.4E-07 40.2 0.7 19 1-19 30-48 (49)
35 PF15288 zf-CCHC_6: Zinc knuck 93.1 0.047 1E-06 39.1 1.2 20 3-22 2-23 (40)
36 KOG0051 RNA polymerase I termi 93.0 0.11 2.4E-06 54.8 4.3 46 92-140 384-429 (607)
37 KOG3841 TEF-1 and related tran 92.6 0.22 4.8E-06 50.4 5.5 50 90-140 74-143 (455)
38 PF01285 TEA: TEA/ATTS domain 91.9 0.19 4.2E-06 50.8 4.3 48 90-138 47-112 (431)
39 PF13873 Myb_DNA-bind_5: Myb/S 91.3 0.49 1.1E-05 35.7 5.0 51 93-143 3-73 (78)
40 PF08914 Myb_DNA-bind_2: Rap1 89.4 0.72 1.6E-05 35.5 4.5 50 93-142 3-60 (65)
41 KOG1194 Predicted DNA-binding 89.2 0.67 1.5E-05 48.0 5.4 42 92-135 187-228 (534)
42 PLN03142 Probable chromatin-re 88.4 0.92 2E-05 50.6 6.2 50 92-142 926-986 (1033)
43 COG5147 REB1 Myb superfamily p 87.1 0.92 2E-05 47.2 5.0 52 91-144 71-122 (512)
44 KOG4282 Transcription factor G 86.2 1.3 2.9E-05 42.3 5.2 57 92-148 54-122 (345)
45 smart00343 ZnF_C2HC zinc finge 84.9 0.49 1.1E-05 29.6 1.1 17 4-20 1-17 (26)
46 PF12776 Myb_DNA-bind_3: Myb/S 81.3 4.5 9.7E-05 31.2 5.4 45 94-138 1-61 (96)
47 KOG0050 mRNA splicing protein 75.4 2.6 5.7E-05 44.4 3.3 45 92-139 59-103 (617)
48 KOG0384 Chromodomain-helicase 72.9 2.1 4.6E-05 48.9 2.0 54 91-145 1132-1196(1373)
49 PF04504 DUF573: Protein of un 72.9 7.2 0.00016 31.9 4.6 41 94-135 6-58 (98)
50 PRK13923 putative spore coat p 71.5 5 0.00011 36.6 3.7 47 93-140 6-57 (170)
51 PF08074 CHDCT2: CHDCT2 (NUC03 69.2 2.9 6.2E-05 38.3 1.7 29 92-120 3-31 (173)
52 PF06461 DUF1086: Domain of Un 69.2 13 0.00027 33.3 5.6 49 95-144 41-91 (145)
53 KOG2009 Transcription initiati 68.9 5.4 0.00012 42.4 3.8 48 84-133 401-448 (584)
54 KOG0385 Chromatin remodeling c 65.4 8.9 0.00019 42.5 4.7 51 93-145 796-846 (971)
55 TIGR02894 DNA_bind_RsfA transc 64.4 7.7 0.00017 35.2 3.4 48 93-142 5-58 (161)
56 COG5082 AIR1 Arginine methyltr 64.2 3.7 8E-05 38.0 1.4 18 2-19 97-114 (190)
57 PF13325 MCRS_N: N-terminal re 64.1 8.9 0.00019 35.7 3.9 47 91-137 72-124 (199)
58 PF11035 SnAPC_2_like: Small n 54.7 31 0.00068 34.6 6.0 52 89-141 18-72 (344)
59 PF09420 Nop16: Ribosome bioge 54.6 27 0.00059 30.6 5.1 48 90-138 112-162 (164)
60 PF13248 zf-ribbon_3: zinc-rib 50.8 11 0.00023 24.0 1.4 20 1-20 1-21 (26)
61 KOG1194 Predicted DNA-binding 46.3 30 0.00065 36.4 4.6 49 93-143 370-418 (534)
62 PF14952 zf-tcix: Putative tre 44.4 14 0.0003 27.2 1.4 18 3-20 12-30 (44)
63 PHA00442 host recBCD nuclease 43.8 23 0.00049 27.4 2.5 24 96-119 24-47 (59)
64 PF01388 ARID: ARID/BRIGHT DNA 42.0 40 0.00087 26.1 3.8 28 113-141 58-90 (92)
65 smart00501 BRIGHT BRIGHT, ARID 41.6 74 0.0016 25.0 5.3 43 100-143 35-88 (93)
66 COG5082 AIR1 Arginine methyltr 40.1 15 0.00032 34.2 1.2 18 2-19 60-77 (190)
67 PF10571 UPF0547: Uncharacteri 37.8 17 0.00036 23.6 0.9 9 2-10 14-22 (26)
68 PTZ00368 universal minicircle 36.1 30 0.00066 29.3 2.5 19 3-21 53-71 (148)
69 PF08281 Sigma70_r4_2: Sigma-7 34.3 1.4E+02 0.0031 20.6 5.3 39 98-139 13-51 (54)
70 PF00191 Annexin: Annexin; In 30.0 69 0.0015 23.0 3.2 41 101-143 4-44 (66)
71 KOG0119 Splicing factor 1/bran 29.2 28 0.00061 36.8 1.3 19 3-21 286-304 (554)
72 PF13696 zf-CCHC_2: Zinc knuck 28.8 28 0.0006 24.0 0.8 19 3-21 9-27 (32)
73 PF11626 Rap1_C: TRF2-interact 28.1 32 0.00069 27.2 1.2 13 93-105 48-60 (87)
74 KOG2656 DNA methyltransferase 28.0 66 0.0014 33.3 3.7 50 93-143 131-185 (445)
75 PF08792 A2L_zn_ribbon: A2L zi 27.9 27 0.00059 23.7 0.7 10 3-12 4-13 (33)
76 PTZ00368 universal minicircle 27.8 38 0.00082 28.7 1.7 17 3-19 28-44 (148)
77 PF13917 zf-CCHC_3: Zinc knuck 25.0 41 0.0009 24.2 1.2 19 2-20 4-22 (42)
78 PF05634 APO_RNA-bind: APO RNA 24.3 53 0.0011 31.0 2.1 20 3-22 99-123 (204)
79 PF06397 Desulfoferrod_N: Desu 24.3 29 0.00062 24.4 0.3 8 4-11 8-15 (36)
80 TIGR02937 sigma70-ECF RNA poly 24.0 2.3E+02 0.0051 21.7 5.4 45 95-143 111-155 (158)
81 KOG4400 E3 ubiquitin ligase in 23.5 41 0.00088 31.2 1.2 18 4-21 145-162 (261)
82 PF13404 HTH_AsnC-type: AsnC-t 21.4 2.4E+02 0.0052 19.7 4.5 38 98-137 3-40 (42)
83 PF06170 DUF983: Protein of un 21.2 42 0.0009 27.2 0.7 16 1-16 7-22 (86)
84 PLN00111 accumulation of photo 20.6 65 0.0014 33.1 2.0 20 3-22 121-145 (399)
85 PRK11179 DNA-binding transcrip 20.4 1.8E+02 0.0039 24.8 4.4 40 97-138 8-47 (153)
No 1
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=99.73 E-value=5.1e-18 Score=126.27 Aligned_cols=53 Identities=49% Similarity=0.691 Sum_probs=47.4
Q ss_pred cCCCccCHHHHHHHHHHHHHcCCCCH---HhhhhhhcCCC-CHHHHHHHHHHHHHHH
Q 021588 90 KRGVPWTEDEHRLFLLGLQKVGKGDW---RGISRNFVKTR-TPTQVASHAQKYFLRR 142 (310)
Q Consensus 90 Kkg~~WTeEEH~lFLeGLekyGkGdW---k~IA~~~V~TR-T~~QVrSHAQKYf~r~ 142 (310)
|++..||+|||++||+||+.||.|+| +.|++.++.+| |+.||+||+||||+++
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k~ 57 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLKQ 57 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHccC
Confidence 45678999999999999999999999 99996555688 9999999999999863
No 2
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.50 E-value=3.2e-14 Score=100.02 Aligned_cols=46 Identities=35% Similarity=0.616 Sum_probs=41.2
Q ss_pred CccCHHHHHHHHHHHHHcCCCCHHhhhhhhcC-CCCHHHHHHHHHHHH
Q 021588 93 VPWTEDEHRLFLLGLQKVGKGDWRGISRNFVK-TRTPTQVASHAQKYF 139 (310)
Q Consensus 93 ~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~-TRT~~QVrSHAQKYf 139 (310)
.+||+||+++|++||++||.++|..|| .+|+ +||..||++||++|.
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~~~W~~Ia-~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGKDNWKKIA-KRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTTTHHHHHH-HHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCcHHHHHH-HHcCCCCCHHHHHHHHHhhC
Confidence 369999999999999999997799999 6888 999999999999983
No 3
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=99.21 E-value=2.5e-11 Score=80.16 Aligned_cols=45 Identities=36% Similarity=0.701 Sum_probs=41.6
Q ss_pred ccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHH
Q 021588 94 PWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 139 (310)
Q Consensus 94 ~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQKYf 139 (310)
.||+||+.+|+.++.+||.++|..|| .++++||..||+.||++++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia-~~~~~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIA-KELPGRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHH-hHcCCCCHHHHHHHHHHhC
Confidence 59999999999999999977999999 6999999999999998763
No 4
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=99.20 E-value=2.6e-11 Score=80.91 Aligned_cols=46 Identities=28% Similarity=0.499 Sum_probs=42.3
Q ss_pred CccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHH
Q 021588 93 VPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 139 (310)
Q Consensus 93 ~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQKYf 139 (310)
..||+||+.+|+.++.+||.++|..|| .++++||+.||+.+|.+++
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia-~~~~~rt~~~~~~~~~~~~ 47 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNNWEKIA-KELPGRTAEQCRERWNNLL 47 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHH-HHcCCCCHHHHHHHHHHHc
Confidence 469999999999999999966999999 6999999999999998765
No 5
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=98.95 E-value=9.1e-10 Score=79.65 Aligned_cols=43 Identities=33% Similarity=0.661 Sum_probs=37.2
Q ss_pred cCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHH
Q 021588 95 WTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 139 (310)
Q Consensus 95 WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQKYf 139 (310)
||+||++++++++++||. +|..|| .++++||+.||+.|+.+++
T Consensus 1 WT~eEd~~L~~~~~~~g~-~W~~Ia-~~l~~Rt~~~~~~r~~~~l 43 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGN-DWKKIA-EHLGNRTPKQCRNRWRNHL 43 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS--HHHHH-HHSTTS-HHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHCc-CHHHHH-HHHCcCCHHHHHHHHHHHC
Confidence 999999999999999996 999999 6888999999999998754
No 6
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=98.92 E-value=1.1e-09 Score=108.88 Aligned_cols=49 Identities=31% Similarity=0.575 Sum_probs=46.6
Q ss_pred ccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 021588 94 PWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRF 143 (310)
Q Consensus 94 ~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQKYf~r~~ 143 (310)
.||.+|+.+||+|++.||-|+|..|| ++|+|||..+|+.|+.|+|+...
T Consensus 74 ~WtadEEilLLea~~t~G~GNW~dIA-~hIGtKtkeeck~hy~k~fv~s~ 122 (438)
T KOG0457|consen 74 SWTADEEILLLEAAETYGFGNWQDIA-DHIGTKTKEECKEHYLKHFVNSP 122 (438)
T ss_pred CCChHHHHHHHHHHHHhCCCcHHHHH-HHHcccchHHHHHHHHHHHhcCc
Confidence 59999999999999999999999999 79999999999999999998644
No 7
>PLN03212 Transcription repressor MYB5; Provisional
Probab=98.76 E-value=1e-08 Score=96.01 Aligned_cols=52 Identities=21% Similarity=0.411 Sum_probs=45.6
Q ss_pred cccCCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhc-CCCCHHHHHHHHHHHHH
Q 021588 88 ERKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFV-KTRTPTQVASHAQKYFL 140 (310)
Q Consensus 88 ~rKkg~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V-~TRT~~QVrSHAQKYf~ 140 (310)
..-+..+||+||++++++++++||.++|+.|| ..+ ..||.+|||.+|.+|+.
T Consensus 21 ~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IA-k~~g~gRT~KQCReRW~N~L~ 73 (249)
T PLN03212 21 MGMKRGPWTVEEDEILVSFIKKEGEGRWRSLP-KRAGLLRCGKSCRLRWMNYLR 73 (249)
T ss_pred CCCcCCCCCHHHHHHHHHHHHHhCcccHHHHH-HhhhcCCCcchHHHHHHHhhc
Confidence 33455679999999999999999998999999 466 58999999999999973
No 8
>PLN03091 hypothetical protein; Provisional
Probab=98.71 E-value=1.2e-08 Score=101.93 Aligned_cols=52 Identities=19% Similarity=0.399 Sum_probs=45.4
Q ss_pred ccccCCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcC-CCCHHHHHHHHHHHH
Q 021588 87 RERKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVK-TRTPTQVASHAQKYF 139 (310)
Q Consensus 87 r~rKkg~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~-TRT~~QVrSHAQKYf 139 (310)
+.+.+...||.||+++++++|++||.++|..|| ++++ .||.+|||.+|.+|+
T Consensus 9 KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IA-k~~g~gRT~KQCRERW~NyL 61 (459)
T PLN03091 9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVP-KQAGLQRCGKSCRLRWINYL 61 (459)
T ss_pred CCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHh-hhhccCcCcchHhHHHHhcc
Confidence 344455679999999999999999999999999 4665 899999999999876
No 9
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=98.46 E-value=1.3e-07 Score=86.21 Aligned_cols=47 Identities=17% Similarity=0.336 Sum_probs=44.6
Q ss_pred CCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcC-CCCHHHHHHHHHHHH
Q 021588 92 GVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVK-TRTPTQVASHAQKYF 139 (310)
Q Consensus 92 g~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~-TRT~~QVrSHAQKYf 139 (310)
.++||.|||+++.+.|++||.|+|..|+ ...+ -|+.+|||.+|-+|+
T Consensus 9 kGpWt~EED~~L~~~V~~~G~~~W~~i~-k~~gl~R~GKSCRlRW~NyL 56 (238)
T KOG0048|consen 9 KGPWTQEEDLTQIRSIKSFGKHNGTALP-KLAGLRRCGKSCRLRWTNYL 56 (238)
T ss_pred CCCCChHHHHHHHHHHHHhCCCCcchhh-hhcCCCccchHHHHHhhccc
Confidence 4789999999999999999999999999 5888 899999999999996
No 10
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=98.31 E-value=5.4e-07 Score=88.04 Aligned_cols=47 Identities=28% Similarity=0.643 Sum_probs=45.3
Q ss_pred ccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHHHH
Q 021588 94 PWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLR 141 (310)
Q Consensus 94 ~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQKYf~r 141 (310)
.|+.+|+.+|+++++..|-|+|..|| .|||+|+...|++|+-|||+-
T Consensus 65 ~WgadEEllli~~~~TlGlGNW~dIa-dyiGsr~kee~k~HylK~y~e 111 (432)
T COG5114 65 GWGADEELLLIECLDTLGLGNWEDIA-DYIGSRAKEEIKSHYLKMYDE 111 (432)
T ss_pred CcCchHHHHHHHHHHhcCCCcHHHHH-HHHhhhhhHHHHHHHHHHHhh
Confidence 59999999999999999999999999 799999999999999999974
No 11
>PLN03212 Transcription repressor MYB5; Provisional
Probab=98.27 E-value=1.4e-06 Score=81.91 Aligned_cols=50 Identities=20% Similarity=0.258 Sum_probs=44.4
Q ss_pred CCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHHHHH
Q 021588 91 RGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRR 142 (310)
Q Consensus 91 kg~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQKYf~r~ 142 (310)
+..+||+||++++++.+.+||. +|..|| .+++.||..||+.||..++.+.
T Consensus 77 ~kgpWT~EED~lLlel~~~~Gn-KWs~IA-k~LpGRTDnqIKNRWns~LrK~ 126 (249)
T PLN03212 77 KRGGITSDEEDLILRLHRLLGN-RWSLIA-GRIPGRTDNEIKNYWNTHLRKK 126 (249)
T ss_pred ccCCCChHHHHHHHHHHHhccc-cHHHHH-hhcCCCCHHHHHHHHHHHHhHH
Confidence 3457999999999999999997 899999 6999999999999998776543
No 12
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=5.7e-07 Score=84.53 Aligned_cols=73 Identities=52% Similarity=0.728 Sum_probs=69.6
Q ss_pred CccccCCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHH-----HHHHHHhcccccCCCCceeecc
Q 021588 86 SRERKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQ-----KYFLRRFNQNKRRRRSSLFDIT 158 (310)
Q Consensus 86 ~r~rKkg~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQ-----KYf~r~~~~~k~~rR~sL~di~ 158 (310)
..+++++..|++.+|.+|+.++.+||+++|..|.++++.+|++.|+.+|+| +|+.+....++.++|.+++|++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~s~a~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 235 (335)
T KOG0724|consen 158 EELRRKGTPVTERERKLVLLALKKDGKIDWRKISQNVEKERTPEQVASHAQEKAFEKALARQKSGEEEKRRKSIEDIT 235 (335)
T ss_pred hhhhhccchhHHHHHHHHHhhhcccccccceechhhhhhhhcchhhhhhhhhhhhHHHHHHHhhhccccccchhhhhh
Confidence 456778999999999999999999999999999999999999999999999 9999999999999999999998
No 13
>PLN03091 hypothetical protein; Provisional
Probab=98.18 E-value=3e-06 Score=85.16 Aligned_cols=49 Identities=14% Similarity=0.282 Sum_probs=44.2
Q ss_pred CCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHHHHH
Q 021588 92 GVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRR 142 (310)
Q Consensus 92 g~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQKYf~r~ 142 (310)
..+||+||++++|+.+++||. +|..|| .++..||..||+.||...+.|.
T Consensus 67 KgpWT~EED~lLLeL~k~~Gn-KWskIA-k~LPGRTDnqIKNRWnslLKKk 115 (459)
T PLN03091 67 RGTFSQQEENLIIELHAVLGN-RWSQIA-AQLPGRTDNEIKNLWNSCLKKK 115 (459)
T ss_pred CCCCCHHHHHHHHHHHHHhCc-chHHHH-HhcCCCCHHHHHHHHHHHHHHH
Confidence 457999999999999999997 999999 6999999999999998766554
No 14
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=98.12 E-value=2.2e-06 Score=86.72 Aligned_cols=42 Identities=31% Similarity=0.555 Sum_probs=39.2
Q ss_pred CccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHH
Q 021588 93 VPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQ 136 (310)
Q Consensus 93 ~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQ 136 (310)
..||.+|..++|+||++||. +|.+|| .+|+|||..||-.|+.
T Consensus 280 k~WS~qE~~LLLEGIe~ygD-dW~kVA-~HVgtKt~EqCIl~FL 321 (531)
T COG5259 280 KNWSRQELLLLLEGIEMYGD-DWDKVA-RHVGTKTKEQCILHFL 321 (531)
T ss_pred ccccHHHHHHHHHHHHHhhh-hHHHHH-HHhCCCCHHHHHHHHH
Confidence 36999999999999999998 999999 6999999999998864
No 15
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=97.91 E-value=1.2e-05 Score=81.84 Aligned_cols=43 Identities=28% Similarity=0.505 Sum_probs=39.7
Q ss_pred CCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHH
Q 021588 92 GVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQ 136 (310)
Q Consensus 92 g~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQ 136 (310)
+..||++|..++|+||++||. +|.+|| .+|+|||..||-.|..
T Consensus 253 ~~~WT~qE~lLLLE~ie~y~d-dW~kVa-~hVg~ks~eqCI~kFL 295 (506)
T KOG1279|consen 253 RPNWTEQETLLLLEAIEMYGD-DWNKVA-DHVGTKSQEQCILKFL 295 (506)
T ss_pred CCCccHHHHHHHHHHHHHhcc-cHHHHH-hccCCCCHHHHHHHHH
Confidence 456999999999999999998 999999 7999999999998754
No 16
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=97.64 E-value=0.00011 Score=67.16 Aligned_cols=51 Identities=18% Similarity=0.332 Sum_probs=44.2
Q ss_pred CCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 021588 91 RGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRF 143 (310)
Q Consensus 91 kg~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQKYf~r~~ 143 (310)
|...||+||+++.+++-.+||- +|..|| .+++.||.-.|+.||.-...|..
T Consensus 61 krg~fT~eEe~~Ii~lH~~~GN-rWs~IA-~~LPGRTDNeIKN~Wnt~lkkkl 111 (238)
T KOG0048|consen 61 KRGNFSDEEEDLIIKLHALLGN-RWSLIA-GRLPGRTDNEVKNHWNTHLKKKL 111 (238)
T ss_pred cCCCCCHHHHHHHHHHHHHHCc-HHHHHH-hhCCCcCHHHHHHHHHHHHHHHH
Confidence 3556999999999999999997 899999 69999999999999966654433
No 17
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=97.60 E-value=8.5e-05 Score=78.19 Aligned_cols=53 Identities=21% Similarity=0.417 Sum_probs=47.1
Q ss_pred CCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHHHHHhc
Q 021588 91 RGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRFN 144 (310)
Q Consensus 91 kg~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQKYf~r~~~ 144 (310)
+.++||.+|+.+++.|+++||..+|-+|- ..|+.|+..|||.+|.+.+.+..+
T Consensus 359 khg~wt~~ED~~L~~AV~~Yg~kdw~k~R-~~vPnRSdsQcR~RY~nvL~~s~K 411 (939)
T KOG0049|consen 359 KHGRWTDQEDVLLVCAVSRYGAKDWAKVR-QAVPNRSDSQCRERYTNVLNRSAK 411 (939)
T ss_pred cCCCCCCHHHHHHHHHHHHhCccchhhHH-HhcCCccHHHHHHHHHHHHHHhhc
Confidence 44579999999999999999999999997 799999999999999887765544
No 18
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=97.37 E-value=0.00022 Score=71.00 Aligned_cols=49 Identities=35% Similarity=0.523 Sum_probs=42.9
Q ss_pred CCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHHHHHhc
Q 021588 92 GVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRFN 144 (310)
Q Consensus 92 g~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQKYf~r~~~ 144 (310)
-..|++||.+.|.+||+.||| |+..|-++-|.||+...|-. -||+|.+.
T Consensus 277 l~~wsEeEcr~FEegl~~yGK-DF~lIr~nkvrtRsvgElVe---yYYlWKkS 325 (445)
T KOG4329|consen 277 LSGWSEEECRNFEEGLELYGK-DFHLIRANKVRTRSVGELVE---YYYLWKKS 325 (445)
T ss_pred cccCCHHHHHHHHHHHHHhcc-cHHHHHhcccccchHHHHHH---HHHHhhcC
Confidence 457999999999999999999 99999999999999999865 47777554
No 19
>PLN03162 golden-2 like transcription factor; Provisional
Probab=96.99 E-value=0.0015 Score=65.64 Aligned_cols=58 Identities=31% Similarity=0.416 Sum_probs=45.2
Q ss_pred ccccCCCccCHHHHHHHHHHHHHcCC--CCHHhhhhhh--cCCCCHHHHHHHHHHHHHHHhcc
Q 021588 87 RERKRGVPWTEDEHRLFLLGLQKVGK--GDWRGISRNF--VKTRTPTQVASHAQKYFLRRFNQ 145 (310)
Q Consensus 87 r~rKkg~~WTeEEH~lFLeGLekyGk--GdWk~IA~~~--V~TRT~~QVrSHAQKYf~r~~~~ 145 (310)
.+||....||.|=|++|+++|++.|. --=|+|- ++ |..=|..+|+||-|||.+.++++
T Consensus 232 g~KKpRLrWTpELH~rFVeAV~qLG~dKATPK~IL-elMnV~GLTRenVKSHLQKYRl~rk~l 293 (526)
T PLN03162 232 GKKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRIL-ELMGVQCLTRHNIASHLQKYRSHRRHL 293 (526)
T ss_pred CCCCCcccCCHHHHHHHHHHHHHhCcCccchHHHH-HHcCCCCcCHHHHHHHHHHHHHhcccc
Confidence 35667889999999999999999993 1234454 24 45679999999999998876644
No 20
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=96.88 E-value=0.0013 Score=69.58 Aligned_cols=47 Identities=21% Similarity=0.422 Sum_probs=41.1
Q ss_pred cCCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHH
Q 021588 90 KRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQK 137 (310)
Q Consensus 90 Kkg~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQK 137 (310)
-|...||-.|++.+|.+|++||+|.|-+|| .|++.||.+|.+.+-..
T Consensus 410 ~K~~rW~l~edeqL~~~V~~YG~g~WakcA-~~Lp~~t~~q~~rrR~R 456 (939)
T KOG0049|consen 410 AKVERWTLVEDEQLLYAVKVYGKGNWAKCA-MLLPKKTSRQLRRRRLR 456 (939)
T ss_pred hccCceeecchHHHHHHHHHHccchHHHHH-HHccccchhHHHHHHHH
Confidence 345569999999999999999999999999 79999999887765443
No 21
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=96.39 E-value=0.0028 Score=65.59 Aligned_cols=49 Identities=20% Similarity=0.508 Sum_probs=45.3
Q ss_pred cCCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHH
Q 021588 90 KRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 139 (310)
Q Consensus 90 Kkg~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQKYf 139 (310)
.+|+.|+.-|++.+-.++.+||+..|..|+ ..+.-+|+.||+.+|-+|.
T Consensus 5 ~kggvwrntEdeilkaav~kyg~nqws~i~-sll~~kt~rqC~~rw~e~l 53 (617)
T KOG0050|consen 5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIA-SLLNRKTARQCKARWEEWL 53 (617)
T ss_pred EecceecccHHHHHHHHHHHcchHHHHHHH-HHHhhcchhHHHHHHHHHh
Confidence 456779999999999999999999999999 7999999999999998885
No 22
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=95.97 E-value=0.017 Score=43.98 Aligned_cols=53 Identities=19% Similarity=0.380 Sum_probs=35.9
Q ss_pred ccCHHHHHHHHHHHHH------cC-----CC--CHHhhhhhhcC----CCCHHHHHHHHHHHHHHHhcccc
Q 021588 94 PWTEDEHRLFLLGLQK------VG-----KG--DWRGISRNFVK----TRTPTQVASHAQKYFLRRFNQNK 147 (310)
Q Consensus 94 ~WTeEEH~lFLeGLek------yG-----kG--dWk~IA~~~V~----TRT~~QVrSHAQKYf~r~~~~~k 147 (310)
.||++|-..||+.+.. ++ ++ -|+.||. .+. .||+.||+..+.+-..+-.+.+.
T Consensus 3 ~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~-~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~k~ 72 (90)
T PF13837_consen 3 NWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAE-ELAEHGYNRTPEQCRNKWKNLKKKYKKIKD 72 (90)
T ss_dssp SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHH-HHHHHC----HHHHHHHHHHHHHHHHCSSS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 5999999999999887 21 12 5999995 443 69999999999776555555443
No 23
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=95.43 E-value=0.031 Score=47.44 Aligned_cols=52 Identities=29% Similarity=0.581 Sum_probs=41.2
Q ss_pred cCCCccCHHHHHHHHHHHHHcCC---CCHHhhhh-----------hhcCCCCHHHHHHHHHHHHHHH
Q 021588 90 KRGVPWTEDEHRLFLLGLQKVGK---GDWRGISR-----------NFVKTRTPTQVASHAQKYFLRR 142 (310)
Q Consensus 90 Kkg~~WTeEEH~lFLeGLekyGk---GdWk~IA~-----------~~V~TRT~~QVrSHAQKYf~r~ 142 (310)
.++..||+||++-+|-.+.+||. |.|..|-+ =|+.+||+..+.-|+. ++++.
T Consensus 47 ~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~-tLi~~ 112 (118)
T PF09111_consen 47 NKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCN-TLIKL 112 (118)
T ss_dssp SS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHH-HHHHH
T ss_pred CCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHH-HHHHH
Confidence 33456999999999999999999 99999954 4789999999999986 55543
No 24
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=95.05 E-value=0.03 Score=59.11 Aligned_cols=52 Identities=27% Similarity=0.424 Sum_probs=42.0
Q ss_pred CCccCHHHHHHHHHHHHHcCCCCHHhh---------hhhhcCCCCHHHHHHHHHHHHHHHhc
Q 021588 92 GVPWTEDEHRLFLLGLQKVGKGDWRGI---------SRNFVKTRTPTQVASHAQKYFLRRFN 144 (310)
Q Consensus 92 g~~WTeEEH~lFLeGLekyGkGdWk~I---------A~~~V~TRT~~QVrSHAQKYf~r~~~ 144 (310)
...||.+|+.-|..||+.+|+ |+.+| +..-+..||.-|||-||-+-..|..+
T Consensus 88 ktaWt~~E~~~Ffdal~~~GK-dFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~~m~k 148 (782)
T KOG4468|consen 88 KTAWTHQEEESFFDALRQVGK-DFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVRRMNK 148 (782)
T ss_pred ccccchhhHHHHHHHHHHhcc-cHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHh
Confidence 457999999999999999998 99998 22456778999999988666555543
No 25
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=94.92 E-value=0.043 Score=55.55 Aligned_cols=50 Identities=24% Similarity=0.391 Sum_probs=44.2
Q ss_pred ccCCccccCCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHH
Q 021588 83 SGRSRERKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASH 134 (310)
Q Consensus 83 s~~~r~rKkg~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSH 134 (310)
++.--.++...+||.+|-++|-.||..+|- ||..|| +++++|..+||...
T Consensus 356 s~t~g~~~~~~~Ws~~e~ekFYKALs~wGt-dF~LIs-~lfP~R~RkqIKaK 405 (507)
T COG5118 356 SSTFGKKKGALRWSKKEIEKFYKALSIWGT-DFSLIS-SLFPNRERKQIKAK 405 (507)
T ss_pred cccccCCCCCCcccHHHHHHHHHHHHHhcc-hHHHHH-HhcCchhHHHHHHH
Confidence 444456777889999999999999999998 999999 79999999999764
No 26
>smart00426 TEA TEA domain.
Probab=94.88 E-value=0.031 Score=44.03 Aligned_cols=43 Identities=35% Similarity=0.468 Sum_probs=32.6
Q ss_pred CccCHHHHHHHHHHHHHcCC-CCHH--------------hhhhhhc-----CCCCHHHHHHHHH
Q 021588 93 VPWTEDEHRLFLLGLQKVGK-GDWR--------------GISRNFV-----KTRTPTQVASHAQ 136 (310)
Q Consensus 93 ~~WTeEEH~lFLeGLekyGk-GdWk--------------~IA~~~V-----~TRT~~QVrSHAQ 136 (310)
.-|.++=+..|++||+.|-+ |.|+ .|+ +|+ ..||.+||.||-|
T Consensus 4 ~vWp~~lE~Af~~aL~~~~~~g~~kik~~~r~k~~gRNelIs-~YI~~~tGk~Rt~KQVsShIQ 66 (68)
T smart00426 4 GVWSPDIEQAFQEALAIYPPCGRRKIILSDEGKMYGRNELIA-RYIKLRTGKTRTRKQVSSHIQ 66 (68)
T ss_pred CcCcHHHHHHHHHHHHHcCccCcccchhhhcCcccchhHHHH-HHHHHHhCCccchhhhcchhe
Confidence 35999999999999999875 2232 244 344 4599999999987
No 27
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=94.87 E-value=0.037 Score=59.52 Aligned_cols=46 Identities=28% Similarity=0.405 Sum_probs=40.5
Q ss_pred CccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 021588 93 VPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRF 143 (310)
Q Consensus 93 ~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQKYf~r~~ 143 (310)
..||..|..+|-.||-.|-| |+..|+ ..|++||..||-. -||.|.+
T Consensus 620 d~WTp~E~~lF~kA~y~~~K-DF~~v~-km~~~KtVaqCVe---yYYtWKK 665 (907)
T KOG4167|consen 620 DKWTPLERKLFNKALYTYSK-DFIFVQ-KMVKSKTVAQCVE---YYYTWKK 665 (907)
T ss_pred ccccHHHHHHHHHHHHHhcc-cHHHHH-HHhccccHHHHHH---HHHHHHH
Confidence 46999999999999999998 999999 6999999999965 4566554
No 28
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=94.74 E-value=0.025 Score=33.74 Aligned_cols=17 Identities=47% Similarity=1.169 Sum_probs=16.2
Q ss_pred CccCCCCCCCCCCCCCC
Q 021588 3 RSCSQCGNNGHNSRTCA 19 (310)
Q Consensus 3 R~CS~Cgn~GHNsRTC~ 19 (310)
|+|-.||..||-+|-|+
T Consensus 1 ~~C~~C~~~GH~~~~Cp 17 (18)
T PF00098_consen 1 RKCFNCGEPGHIARDCP 17 (18)
T ss_dssp SBCTTTSCSSSCGCTSS
T ss_pred CcCcCCCCcCcccccCc
Confidence 68999999999999998
No 29
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=94.31 E-value=0.025 Score=58.37 Aligned_cols=56 Identities=14% Similarity=0.370 Sum_probs=46.3
Q ss_pred ccccCCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 021588 87 RERKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRF 143 (310)
Q Consensus 87 r~rKkg~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQKYf~r~~ 143 (310)
+...+++.|+..|+..++-++++||..+|..||. .+..||+.||+.|+..|...+.
T Consensus 15 ~~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas-~~~~~~~kq~~~rw~~~lnp~l 70 (512)
T COG5147 15 QTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVAS-LLISSTGKQSSNRWNNHLNPQL 70 (512)
T ss_pred cceecCCCCCCcchhHHHHHHhhcccccHHHHHH-Hhcccccccccchhhhhhchhc
Confidence 3344556899999999999999999999999995 5556999999999977765443
No 30
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=94.27 E-value=0.055 Score=56.93 Aligned_cols=52 Identities=19% Similarity=0.246 Sum_probs=42.2
Q ss_pred CCCccCHHHHHHHHHHHH-------Hc-------CC-----------CCHHhhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 021588 91 RGVPWTEDEHRLFLLGLQ-------KV-------GK-----------GDWRGISRNFVKTRTPTQVASHAQKYFLRRF 143 (310)
Q Consensus 91 kg~~WTeEEH~lFLeGLe-------ky-------Gk-----------GdWk~IA~~~V~TRT~~QVrSHAQKYf~r~~ 143 (310)
+..+||.||++++|+.++ .| |. =.|-.|+ +.++||+..|||.||+|-..+-.
T Consensus 435 ~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vs-e~~~TR~~~qCr~Kw~kl~~~~s 511 (607)
T KOG0051|consen 435 NRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVS-EMLGTRSRIQCRYKWYKLTTSPS 511 (607)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhh-HhhcCCCcchHHHHHHHHHhhHH
Confidence 455799999999999996 34 11 1699999 59999999999999998766544
No 31
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=94.09 E-value=0.073 Score=58.92 Aligned_cols=51 Identities=22% Similarity=0.453 Sum_probs=46.1
Q ss_pred CC-ccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 021588 92 GV-PWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRF 143 (310)
Q Consensus 92 g~-~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQKYf~r~~ 143 (310)
|. .||..+=..|+.|.++||+.+...|| ..|.+||..+|+.+++-|+.|..
T Consensus 823 gf~~w~~~~f~~f~~~~~~~gr~~~~~i~-~~~~~k~~~ev~~y~~~f~~~~~ 874 (1033)
T PLN03142 823 GFSTWSRRDFNAFIRACEKYGRNDIKSIA-SEMEGKTEEEVERYAKVFWERYK 874 (1033)
T ss_pred CcCcccHHHHHHHHHHHHHhCHhHHHHHH-HHhcCCCHHHHHHHHHHHHHhhh
Confidence 54 59999999999999999999999999 69999999999999988886644
No 32
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=94.02 E-value=0.013 Score=55.47 Aligned_cols=49 Identities=18% Similarity=0.075 Sum_probs=45.4
Q ss_pred ccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHHHHHhc
Q 021588 94 PWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRFN 144 (310)
Q Consensus 94 ~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQKYf~r~~~ 144 (310)
.||.+||..|.++|..| +..|..|- .|++.++..|.++|+|+||-+...
T Consensus 55 ~~t~~~~~~~~~~l~~~-~~~~~~~~-~~~~~~~~v~~~~~~~~~~p~~~~ 103 (335)
T KOG0724|consen 55 RRTPDSWDKFAEALPLE-KRLEDKIE-EYIGLVFDVNIRESGQKPFPKYGK 103 (335)
T ss_pred ccchhhhhHHHhcCccc-cccchhHH-hhhhhHHHHhhhhccCCCccccCc
Confidence 49999999999999999 55999998 799999999999999999988775
No 33
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]
Probab=93.89 E-value=0.046 Score=56.57 Aligned_cols=51 Identities=27% Similarity=0.549 Sum_probs=41.4
Q ss_pred ccCCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 021588 89 RKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRF 143 (310)
Q Consensus 89 rKkg~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQKYf~r~~ 143 (310)
|-...-|+..|-.+|.++|+|||+ |+..|-++|++=++.+-+-. -||++..
T Consensus 282 RDemEEWSasEanLFEeALeKyGK-DFndIrqdfLPWKSl~sIve---yYYmwKt 332 (693)
T KOG3554|consen 282 RDEMEEWSASEANLFEEALEKYGK-DFNDIRQDFLPWKSLTSIVE---YYYMWKT 332 (693)
T ss_pred hhhhhhccchhhHHHHHHHHHhcc-cHHHHHHhhcchHHHHHHHH---HHHHHhh
Confidence 344556999999999999999998 99999999999888776654 4555543
No 34
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=93.41 E-value=0.03 Score=40.25 Aligned_cols=19 Identities=37% Similarity=1.034 Sum_probs=17.1
Q ss_pred CCCccCCCCCCCCCCCCCC
Q 021588 1 MSRSCSQCGNNGHNSRTCA 19 (310)
Q Consensus 1 m~R~CS~Cgn~GHNsRTC~ 19 (310)
+.+.|.+||..||..+.|+
T Consensus 30 lp~~C~~C~~~gH~~~~C~ 48 (49)
T PF14392_consen 30 LPRFCFHCGRIGHSDKECP 48 (49)
T ss_pred cChhhcCCCCcCcCHhHcC
Confidence 3578999999999999997
No 35
>PF15288 zf-CCHC_6: Zinc knuckle
Probab=93.09 E-value=0.047 Score=39.07 Aligned_cols=20 Identities=30% Similarity=0.724 Sum_probs=17.6
Q ss_pred CccCCCCCCCCCC--CCCCCCC
Q 021588 3 RSCSQCGNNGHNS--RTCAEAG 22 (310)
Q Consensus 3 R~CS~Cgn~GHNs--RTC~~~~ 22 (310)
+||..||.+||.. |+||-..
T Consensus 2 ~kC~~CG~~GH~~t~k~CP~~~ 23 (40)
T PF15288_consen 2 VKCKNCGAFGHMRTNKRCPMYC 23 (40)
T ss_pred ccccccccccccccCccCCCCC
Confidence 7999999999976 8999665
No 36
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=93.04 E-value=0.11 Score=54.78 Aligned_cols=46 Identities=22% Similarity=0.407 Sum_probs=40.0
Q ss_pred CCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHHH
Q 021588 92 GVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFL 140 (310)
Q Consensus 92 g~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQKYf~ 140 (310)
.+.||+||.+.+.....++|. +|..|++ . -.|.|.-||.||..|-.
T Consensus 384 rg~wt~ee~eeL~~l~~~~g~-~W~~Ig~-~-lgr~P~~crd~wr~~~~ 429 (607)
T KOG0051|consen 384 RGKWTPEEEEELKKLVVEHGN-DWKEIGK-A-LGRMPMDCRDRWRQYVK 429 (607)
T ss_pred cCCCCcchHHHHHHHHHHhcc-cHHHHHH-H-HccCcHHHHHHHHHhhc
Confidence 445999999999999999996 9999994 4 46889999999998854
No 37
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=92.55 E-value=0.22 Score=50.40 Aligned_cols=50 Identities=32% Similarity=0.351 Sum_probs=40.0
Q ss_pred cCCCccCHHHHHHHHHHHHHcCC---------------CCHHhhhhhhc-----CCCCHHHHHHHHHHHHH
Q 021588 90 KRGVPWTEDEHRLFLLGLQKVGK---------------GDWRGISRNFV-----KTRTPTQVASHAQKYFL 140 (310)
Q Consensus 90 Kkg~~WTeEEH~lFLeGLekyGk---------------GdWk~IA~~~V-----~TRT~~QVrSHAQKYf~ 140 (310)
-..+.|+++=++.|+|||..|-. |+=..||+ || +|||.+||-||-|=.-.
T Consensus 74 daegvWSpdIEqsFqEALaiyppcGrrKIilsdegkmyGRNELIar-YIKlrtgktRTrKQVSSHIQVlar 143 (455)
T KOG3841|consen 74 DAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR-YIKLRTGKTRTRKQVSSHIQVLAR 143 (455)
T ss_pred ccccccChhHHHHHHHHHhhcCCCCceeEEEccCccccchHHHHHH-HHHHhcCCchhHHHHHHHHHHHHH
Confidence 34456999999999999998852 56778895 77 68999999999994433
No 38
>PF01285 TEA: TEA/ATTS domain family; InterPro: IPR000818 Transcriptional enhancer activators are nuclear proteins that contain a TEA/ATTSdomain, a DNA-binding region of 66-68 amino acids. The TEA/ATTS domain is found in the N-termini of certain gene regulatory proteins, such as the Simian virus 40 (SV40) enhancer factor TEF-1, yeast trans-acting factor TEC-1 (which is required for TY1 enhancer activity), and the Aspergillus abaA regulatory gene product. SV40 and retroviral enhancers, and those to which TEF-1, TEC-1 and abaA proteins bind, contain GT-IIC sites: the TEA/ATTS domain may therefore recognise and bind such sites. Secondary structure predictions suggest the presence of 3 helices, but have not confirmed the presence of the helix-turn-helix motif characteristic of many DNA-binding proteins: DNA-binding may therefore be effected by a different mechanism [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3L15_B 2HZD_A 3KYS_A 3JUA_C 4EAZ_B.
Probab=91.89 E-value=0.19 Score=50.81 Aligned_cols=48 Identities=33% Similarity=0.380 Sum_probs=31.1
Q ss_pred cCCCccCHHHHHHHHHHHHHcCC-------------CCHHhhhhhhc-----CCCCHHHHHHHHHHH
Q 021588 90 KRGVPWTEDEHRLFLLGLQKVGK-------------GDWRGISRNFV-----KTRTPTQVASHAQKY 138 (310)
Q Consensus 90 Kkg~~WTeEEH~lFLeGLekyGk-------------GdWk~IA~~~V-----~TRT~~QVrSHAQKY 138 (310)
+....|++|=|..|++||+.|-. |+=+.|+ .|| .+||.+||.||.|-.
T Consensus 47 ~~~~vw~~~~e~af~~al~~~~~~g~~k~~~~~~~~grn~li~-~yi~~~tg~~rt~kqvsshiqvl 112 (431)
T PF01285_consen 47 DGEGVWPPDIEQAFQEALAIYPPCGRRKLSDEGKMYGRNELIS-DYIKLKTGKTRTRKQVSSHIQVL 112 (431)
T ss_dssp GGS--S-HHHHHHHHHHHHHS-SSS---HHHH-----THHHHH-HHHHHHHS----SHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCCcccccccccccchhHHH-HHHHHHhCcccchhHHHHHHHHH
Confidence 34455999999999999999864 3334466 466 469999999999955
No 39
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=91.33 E-value=0.49 Score=35.73 Aligned_cols=51 Identities=16% Similarity=0.235 Sum_probs=39.6
Q ss_pred CccCHHHHHHHHHHHHHcC-----C-----------CCHHhhhhhh----cCCCCHHHHHHHHHHHHHHHh
Q 021588 93 VPWTEDEHRLFLLGLQKVG-----K-----------GDWRGISRNF----VKTRTPTQVASHAQKYFLRRF 143 (310)
Q Consensus 93 ~~WTeEEH~lFLeGLekyG-----k-----------GdWk~IA~~~----V~TRT~~QVrSHAQKYf~r~~ 143 (310)
..||.+|.+.|++.|++|- + .-|..|+..| .+.||..|++..|+++-...+
T Consensus 3 ~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~K 73 (78)
T PF13873_consen 3 PNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAK 73 (78)
T ss_pred CCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Confidence 3599999999999999983 1 3799998633 237999999999887755433
No 40
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=89.44 E-value=0.72 Score=35.52 Aligned_cols=50 Identities=18% Similarity=0.301 Sum_probs=32.3
Q ss_pred CccCHHHHHHHHHHHHHcC------CCC--HHhhhhhhcCCCCHHHHHHHHHHHHHHH
Q 021588 93 VPWTEDEHRLFLLGLQKVG------KGD--WRGISRNFVKTRTPTQVASHAQKYFLRR 142 (310)
Q Consensus 93 ~~WTeEEH~lFLeGLekyG------kGd--Wk~IA~~~V~TRT~~QVrSHAQKYf~r~ 142 (310)
++.|+||+..+++.|..+. .|+ |+.+++.++..+|-.--|.|+.|.+...
T Consensus 3 ~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~ 60 (65)
T PF08914_consen 3 TPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGR 60 (65)
T ss_dssp ----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT---
T ss_pred CCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence 5789999999999996553 243 9999977776788888888888776543
No 41
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=89.20 E-value=0.67 Score=47.98 Aligned_cols=42 Identities=24% Similarity=0.355 Sum_probs=36.7
Q ss_pred CCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHH
Q 021588 92 GVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHA 135 (310)
Q Consensus 92 g~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHA 135 (310)
.-.||.||-.+|-++++.||+ ++.+|- ..+.-|+..-++-++
T Consensus 187 ~d~WT~Ed~vlFe~aF~~~GK-~F~kIr-q~LP~rsLaSlvqyY 228 (534)
T KOG1194|consen 187 PDEWTAEDIVLFEQAFQFFGK-DFHKIR-QALPHRSLASLVQYY 228 (534)
T ss_pred cccchHHHHHHHHHHHHHhcc-cHHHHH-HHccCccHHHHHHHH
Confidence 446999999999999999998 999998 699999987776544
No 42
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=88.36 E-value=0.92 Score=50.59 Aligned_cols=50 Identities=32% Similarity=0.629 Sum_probs=42.0
Q ss_pred CCccCHHHHHHHHHHHHHcCCCCHHhhhh-----------hhcCCCCHHHHHHHHHHHHHHH
Q 021588 92 GVPWTEDEHRLFLLGLQKVGKGDWRGISR-----------NFVKTRTPTQVASHAQKYFLRR 142 (310)
Q Consensus 92 g~~WTeEEH~lFLeGLekyGkGdWk~IA~-----------~~V~TRT~~QVrSHAQKYf~r~ 142 (310)
+..||+||++.+|-.+.+||.|+|..|-. -|+.+||+..+.-++. ++++.
T Consensus 926 ~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~-~l~~~ 986 (1033)
T PLN03142 926 GKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCD-TLIRL 986 (1033)
T ss_pred CCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHH-HHHHH
Confidence 34599999999999999999999999943 5789999999999986 44433
No 43
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=87.13 E-value=0.92 Score=47.19 Aligned_cols=52 Identities=17% Similarity=0.343 Sum_probs=45.7
Q ss_pred CCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHHHHHhc
Q 021588 91 RGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRFN 144 (310)
Q Consensus 91 kg~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQKYf~r~~~ 144 (310)
+...|++||++.++..=..+|- .|..|| .+++.||..||...|.+-+.....
T Consensus 71 k~~~~~~eed~~li~l~~~~~~-~wstia-~~~d~rt~~~~~ery~~~~~~~~s 122 (512)
T COG5147 71 KKKNWSEEEDEQLIDLDKELGT-QWSTIA-DYKDRRTAQQCVERYVNTLEDLSS 122 (512)
T ss_pred ccccccHHHHHHHHHHHHhcCc-hhhhhc-cccCccchHHHHHHHHHHhhhhhc
Confidence 4556999999999999999998 799999 799999999999888877766554
No 44
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=86.20 E-value=1.3 Score=42.32 Aligned_cols=57 Identities=16% Similarity=0.354 Sum_probs=42.0
Q ss_pred CCccCHHHHHHHHHHHHHc----CCC-----CHHhhhhhhc---CCCCHHHHHHHHHHHHHHHhccccc
Q 021588 92 GVPWTEDEHRLFLLGLQKV----GKG-----DWRGISRNFV---KTRTPTQVASHAQKYFLRRFNQNKR 148 (310)
Q Consensus 92 g~~WTeEEH~lFLeGLeky----GkG-----dWk~IA~~~V---~TRT~~QVrSHAQKYf~r~~~~~k~ 148 (310)
...|+.||-+.||+...+. ..+ .|..||+++- --||++||+..+.+-..+.++.+.+
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~k~~ 122 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKEKAK 122 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 3679999999999887643 233 4999996333 3499999999998776666655443
No 45
>smart00343 ZnF_C2HC zinc finger.
Probab=84.95 E-value=0.49 Score=29.62 Aligned_cols=17 Identities=41% Similarity=1.152 Sum_probs=15.6
Q ss_pred ccCCCCCCCCCCCCCCC
Q 021588 4 SCSQCGNNGHNSRTCAE 20 (310)
Q Consensus 4 ~CS~Cgn~GHNsRTC~~ 20 (310)
+|..||..||.++.|+.
T Consensus 1 ~C~~CG~~GH~~~~C~~ 17 (26)
T smart00343 1 KCYNCGKEGHIARDCPK 17 (26)
T ss_pred CCccCCCCCcchhhCCc
Confidence 59999999999999983
No 46
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=81.25 E-value=4.5 Score=31.15 Aligned_cols=45 Identities=27% Similarity=0.478 Sum_probs=32.8
Q ss_pred ccCHHHHHHHHHHHHHc---C----CC-----CHHhhhhhh----cCCCCHHHHHHHHHHH
Q 021588 94 PWTEDEHRLFLLGLQKV---G----KG-----DWRGISRNF----VKTRTPTQVASHAQKY 138 (310)
Q Consensus 94 ~WTeEEH~lFLeGLeky---G----kG-----dWk~IA~~~----V~TRT~~QVrSHAQKY 138 (310)
.||+++++.||+.|... | .+ .|..|++.| -...|..||++|+...
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~l 61 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTL 61 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence 49999999999999654 2 12 477787533 2447899999998643
No 47
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=75.45 E-value=2.6 Score=44.44 Aligned_cols=45 Identities=20% Similarity=0.366 Sum_probs=39.1
Q ss_pred CCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHH
Q 021588 92 GVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 139 (310)
Q Consensus 92 g~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQKYf 139 (310)
.+-|+.||++++|.+...+.. -|+.|+. +-.||..||-.|+++-.
T Consensus 59 ~tews~eederlLhlakl~p~-qwrtIa~--i~gr~~~qc~eRy~~ll 103 (617)
T KOG0050|consen 59 KTEWSREEDERLLHLAKLEPT-QWRTIAD--IMGRTSQQCLERYNNLL 103 (617)
T ss_pred hhhhhhhHHHHHHHHHHhcCC-ccchHHH--HhhhhHHHHHHHHHHHH
Confidence 356999999999999999987 8999993 55799999999998654
No 48
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=72.88 E-value=2.1 Score=48.86 Aligned_cols=54 Identities=24% Similarity=0.604 Sum_probs=39.1
Q ss_pred CCCccCHHHHHHHHHHHHHcCCCCHHhhhh--------h-h-cC-CCCHHHHHHHHHHHHHHHhcc
Q 021588 91 RGVPWTEDEHRLFLLGLQKVGKGDWRGISR--------N-F-VK-TRTPTQVASHAQKYFLRRFNQ 145 (310)
Q Consensus 91 kg~~WTeEEH~lFLeGLekyGkGdWk~IA~--------~-~-V~-TRT~~QVrSHAQKYf~r~~~~ 145 (310)
....|..||+..||.||-+||.|.|..|-- + | +- -=+..|.+.++ .|++.+.+.
T Consensus 1132 ~~~~W~~e~Ds~LLiGI~khGygswe~Ir~Dp~L~l~dKi~~~e~~P~a~~L~~R~-~yLls~~~~ 1196 (1373)
T KOG0384|consen 1132 WDCDWGSEDDSMLLIGIFKHGYGSWEAIRLDPDLGLTDKIFLVETVPQAKHLQRRA-DYLLSLLRK 1196 (1373)
T ss_pred cccCCCchhhhhHhhhhhhcccccHHHhccCccccchhhhcccccCCchHHHHHHH-HHHHHHHhh
Confidence 567799999999999999999999999831 1 1 01 12456676666 577766543
No 49
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=72.85 E-value=7.2 Score=31.91 Aligned_cols=41 Identities=29% Similarity=0.531 Sum_probs=29.3
Q ss_pred ccCHHHHHHHHHHHHHc----CC---CCHHhhhhhhcCCC-----CHHHHHHHH
Q 021588 94 PWTEDEHRLFLLGLQKV----GK---GDWRGISRNFVKTR-----TPTQVASHA 135 (310)
Q Consensus 94 ~WTeEEH~lFLeGLeky----Gk---GdWk~IA~~~V~TR-----T~~QVrSHA 135 (310)
.||+|+|..+|+||-.| |. -||...- ++|... |..|+..-.
T Consensus 6 ~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~-~~vk~~l~~~~s~~Ql~~Ki 58 (98)
T PF04504_consen 6 LWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFY-DFVKGSLSFDVSKNQLYDKI 58 (98)
T ss_pred CCCchHHHHHHHHHHHHHHhcCCCCCccHHHHH-HHHHHHccCCCCHHHHHHHH
Confidence 49999999999999988 63 2777766 455444 556654433
No 50
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=71.47 E-value=5 Score=36.56 Aligned_cols=47 Identities=13% Similarity=0.130 Sum_probs=34.7
Q ss_pred CccCHHHHHHHHHHHHHcCCCCHHhhhhhh-----cCCCCHHHHHHHHHHHHH
Q 021588 93 VPWTEDEHRLFLLGLQKVGKGDWRGISRNF-----VKTRTPTQVASHAQKYFL 140 (310)
Q Consensus 93 ~~WTeEEH~lFLeGLekyGkGdWk~IA~~~-----V~TRT~~QVrSHAQKYf~ 140 (310)
..||+||+.++.+-+-+|++-.=..++ .| .=.||..+|..+|..|..
T Consensus 6 dawt~e~d~llae~vl~~i~eg~tql~-afe~~g~~L~rt~aac~fRwNs~vr 57 (170)
T PRK13923 6 DAWTQERDGLLAEVVLRHIREGGTQLK-AFEEVGDALKRTAAACGFRWNSVVR 57 (170)
T ss_pred hhhhhHHHHHHHHHHHHHHhccchHHH-HHHHHHHHHhhhHHHHHhHHHHHHH
Confidence 469999999999999999863333333 12 236999999999965544
No 51
>PF08074 CHDCT2: CHDCT2 (NUC038) domain; InterPro: IPR012957 The CHDCT2 C-terminal domain is found in PHD/RING fingers and chromo domain-associated CHD-like helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=69.18 E-value=2.9 Score=38.27 Aligned_cols=29 Identities=28% Similarity=0.562 Sum_probs=25.9
Q ss_pred CCccCHHHHHHHHHHHHHcCCCCHHhhhh
Q 021588 92 GVPWTEDEHRLFLLGLQKVGKGDWRGISR 120 (310)
Q Consensus 92 g~~WTeEEH~lFLeGLekyGkGdWk~IA~ 120 (310)
...|-.+-|-+||.|+-+||.|+|..|..
T Consensus 3 ~~iw~r~hdywll~gi~~hgy~rwqdi~n 31 (173)
T PF08074_consen 3 YEIWHRRHDYWLLAGIVKHGYGRWQDIQN 31 (173)
T ss_pred hhhhhhhhhHHHHhHHhhccchhHHHHhc
Confidence 34599999999999999999999999963
No 52
>PF06461 DUF1086: Domain of Unknown Function (DUF1086); InterPro: IPR009462 This entry represents several eukaryotic domains of unknown function, which are present in chromodomain helicase DNA binding proteins. This domain is often found in conjunction with IPR000330 from INTERPRO, IPR001650 from INTERPRO, IPR009463 from INTERPRO, IPR000953 from INTERPRO and IPR001965 from INTERPRO.
Probab=69.17 E-value=13 Score=33.34 Aligned_cols=49 Identities=12% Similarity=0.377 Sum_probs=41.6
Q ss_pred cCHHHHHHHHHHHHHcCCC--CHHhhhhhhcCCCCHHHHHHHHHHHHHHHhc
Q 021588 95 WTEDEHRLFLLGLQKVGKG--DWRGISRNFVKTRTPTQVASHAQKYFLRRFN 144 (310)
Q Consensus 95 WTeEEH~lFLeGLekyGkG--dWk~IA~~~V~TRT~~QVrSHAQKYf~r~~~ 144 (310)
++..+.+.||.+|.+||-| +|+-+- .-+..+|..+++.++--|+.++..
T Consensus 41 Fn~rQR~~Fln~vMR~G~~~f~~~w~~-~~Lr~Ks~~ei~aY~~LFm~HL~E 91 (145)
T PF06461_consen 41 FNPRQRKAFLNAVMRYGMGAFDWKWFV-PRLRGKSEKEIRAYGSLFMRHLCE 91 (145)
T ss_pred cCHHHHHHHHHHHHHHCcCcccchHHh-hhhccccHHHHHHHHHHHHHHhcC
Confidence 6788899999999999987 788887 479999999999999766665553
No 53
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=68.88 E-value=5.4 Score=42.39 Aligned_cols=48 Identities=25% Similarity=0.404 Sum_probs=42.4
Q ss_pred cCCccccCCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHH
Q 021588 84 GRSRERKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVAS 133 (310)
Q Consensus 84 ~~~r~rKkg~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrS 133 (310)
+...++.....||.+|=++|-.+|..+|. ++..|+ +....|+..||+.
T Consensus 401 ~t~sk~~~~~~w~~se~e~fyka~~~~gs-~~slis-~l~p~R~rk~iK~ 448 (584)
T KOG2009|consen 401 ATYSKKLETDKWDASETELFYKALSERGS-DFSLIS-NLFPLRDRKQIKA 448 (584)
T ss_pred hhccCccccCcccchhhHHhhhHHhhhcc-cccccc-cccccccHHHHHH
Confidence 34455666788999999999999999998 999999 7999999999975
No 54
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=65.43 E-value=8.9 Score=42.52 Aligned_cols=51 Identities=25% Similarity=0.418 Sum_probs=45.0
Q ss_pred CccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHHHHHhcc
Q 021588 93 VPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRFNQ 145 (310)
Q Consensus 93 ~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQKYf~r~~~~ 145 (310)
..||+.+=..|+.|.+|||++|-..||+ -|-. |+..|..++.-||-++..+
T Consensus 796 t~w~k~df~~fi~a~eKygr~di~~ia~-~~e~-~~eev~~y~rvfwer~~el 846 (971)
T KOG0385|consen 796 TNWTKRDFNQFIKANEKYGRDDIENIAA-EVEG-TPEEVGEYARVFWERLEEL 846 (971)
T ss_pred cchhhhhHHHHHHHhhccCcchhhhhHH-hhcC-CHHHHHHHHHHHHHHHHHh
Confidence 3599999999999999999999999995 5655 9999999999888887754
No 55
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=64.39 E-value=7.7 Score=35.18 Aligned_cols=48 Identities=19% Similarity=0.335 Sum_probs=38.1
Q ss_pred CccCHHHHHHHHHHHHHcCC-C-----CHHhhhhhhcCCCCHHHHHHHHHHHHHHH
Q 021588 93 VPWTEDEHRLFLLGLQKVGK-G-----DWRGISRNFVKTRTPTQVASHAQKYFLRR 142 (310)
Q Consensus 93 ~~WTeEEH~lFLeGLekyGk-G-----dWk~IA~~~V~TRT~~QVrSHAQKYf~r~ 142 (310)
-.||+||+.++.+-+-+|=+ | .+..+++ -=+||+.-|..+|..|..++
T Consensus 5 DAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~--~L~RTsAACGFRWNs~VRkq 58 (161)
T TIGR02894 5 DAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGR--ALNRTAAACGFRWNAYVRKQ 58 (161)
T ss_pred cccccHHHHHHHHHHHHHHhcchHHHHHHHHHHH--HHcccHHHhcchHHHHHHHH
Confidence 46999999999999998843 2 4666663 33799999999999887655
No 56
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=64.17 E-value=3.7 Score=38.04 Aligned_cols=18 Identities=44% Similarity=1.123 Sum_probs=16.0
Q ss_pred CCccCCCCCCCCCCCCCC
Q 021588 2 SRSCSQCGNNGHNSRTCA 19 (310)
Q Consensus 2 ~R~CS~Cgn~GHNsRTC~ 19 (310)
..+|.+||-+||=+|-|+
T Consensus 97 ~~~C~~Cg~~GH~~~dC~ 114 (190)
T COG5082 97 PKKCYNCGETGHLSRDCN 114 (190)
T ss_pred ccccccccccCccccccC
Confidence 358999999999999994
No 57
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=64.06 E-value=8.9 Score=35.66 Aligned_cols=47 Identities=13% Similarity=0.160 Sum_probs=36.7
Q ss_pred CCCccCHHHHHHHHHHHHHcC--CCCHHhhhh----hhcCCCCHHHHHHHHHH
Q 021588 91 RGVPWTEDEHRLFLLGLQKVG--KGDWRGISR----NFVKTRTPTQVASHAQK 137 (310)
Q Consensus 91 kg~~WTeEEH~lFLeGLekyG--kGdWk~IA~----~~V~TRT~~QVrSHAQK 137 (310)
....||.+|++.+........ ...|.+|-. -|-.+||+++...||+-
T Consensus 72 ~kalfS~~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~l 124 (199)
T PF13325_consen 72 SKALFSKEEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRL 124 (199)
T ss_pred ccCCCCHHHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHH
Confidence 456899999999998766553 246777732 47789999999999994
No 58
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=54.71 E-value=31 Score=34.63 Aligned_cols=52 Identities=21% Similarity=0.260 Sum_probs=40.2
Q ss_pred ccCCCccCHHHHHHHHHHHHHc-CC--CCHHhhhhhhcCCCCHHHHHHHHHHHHHH
Q 021588 89 RKRGVPWTEDEHRLFLLGLQKV-GK--GDWRGISRNFVKTRTPTQVASHAQKYFLR 141 (310)
Q Consensus 89 rKkg~~WTeEEH~lFLeGLeky-Gk--GdWk~IA~~~V~TRT~~QVrSHAQKYf~r 141 (310)
.+....||..|.+.+|.+|+-. |. =|-..|+ ..+.+|...||+..-|+.-.|
T Consensus 18 ~~gp~~Ws~rEkr~Llr~Lqar~g~~epd~ael~-~~l~~Rs~aEI~~fl~~LK~r 72 (344)
T PF11035_consen 18 VTGPAAWSAREKRQLLRLLQARRGQPEPDAAELA-KELPGRSEAEIRDFLQQLKGR 72 (344)
T ss_pred CCCcccCcHHHHHHHHHHHHHhcCCCCcCHHHHH-hhccCcCHHHHHHHHHHHHHH
Confidence 3446789999999999999966 42 2555677 589999999999988765433
No 59
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=54.55 E-value=27 Score=30.60 Aligned_cols=48 Identities=25% Similarity=0.403 Sum_probs=38.3
Q ss_pred cCCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhc-C--CCCHHHHHHHHHHH
Q 021588 90 KRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFV-K--TRTPTQVASHAQKY 138 (310)
Q Consensus 90 Kkg~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V-~--TRT~~QVrSHAQKY 138 (310)
++...=|++|.......|++||. |++.++++.= . =.|+.|++--..+|
T Consensus 112 ~~~~~ls~~e~~~i~~Li~KhGd-Dy~aMarD~KLN~~Q~T~~qlrrki~~~ 162 (164)
T PF09420_consen 112 KKPRRLSEREIEYIEYLIEKHGD-DYKAMARDRKLNYMQHTPGQLRRKIRKY 162 (164)
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc-cHHHHhccCCCCcccCCHHHHHHHHHHh
Confidence 55667899999999999999997 9999996321 1 16999999887776
No 60
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=50.83 E-value=11 Score=24.01 Aligned_cols=20 Identities=25% Similarity=0.780 Sum_probs=14.9
Q ss_pred CCCccCCCCCC-CCCCCCCCC
Q 021588 1 MSRSCSQCGNN-GHNSRTCAE 20 (310)
Q Consensus 1 m~R~CS~Cgn~-GHNsRTC~~ 20 (310)
|.+.|.+||.. --..+-|+.
T Consensus 1 m~~~Cp~Cg~~~~~~~~fC~~ 21 (26)
T PF13248_consen 1 MEMFCPNCGAEIDPDAKFCPN 21 (26)
T ss_pred CcCCCcccCCcCCcccccChh
Confidence 88999999984 345666763
No 61
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=46.35 E-value=30 Score=36.37 Aligned_cols=49 Identities=6% Similarity=-0.078 Sum_probs=43.2
Q ss_pred CccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 021588 93 VPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRF 143 (310)
Q Consensus 93 ~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQKYf~r~~ 143 (310)
..||.+|..+.+++|++||+ +...|+ ..|+.++-.|+..-...|-.|+.
T Consensus 370 ~~~~T~~~la~v~~I~~~~~-~~~pl~-wrik~t~cmee~e~l~~~~Rr~m 418 (534)
T KOG1194|consen 370 RCFDTPAALALIDNIKRKHH-MCVPLV-WRVKQTKCMEENEILNEEARRQM 418 (534)
T ss_pred cccCcHHHHHHHHHHHHhcc-Ccchhh-hHhcCcchhhHHHHHHHHHHHHH
Confidence 56999999999999999998 899998 78999999999988887765554
No 62
>PF14952 zf-tcix: Putative treble-clef, zinc-finger, Zn-binding
Probab=44.42 E-value=14 Score=27.25 Aligned_cols=18 Identities=39% Similarity=1.055 Sum_probs=14.0
Q ss_pred CccCCCC-CCCCCCCCCCC
Q 021588 3 RSCSQCG-NNGHNSRTCAE 20 (310)
Q Consensus 3 R~CS~Cg-n~GHNsRTC~~ 20 (310)
|||.+|| .||+-+--|.+
T Consensus 12 rkCp~CGt~NG~R~~~CKN 30 (44)
T PF14952_consen 12 RKCPKCGTYNGTRGLSCKN 30 (44)
T ss_pred ccCCcCcCccCcccccccC
Confidence 8999999 46877766764
No 63
>PHA00442 host recBCD nuclease inhibitor
Probab=43.82 E-value=23 Score=27.43 Aligned_cols=24 Identities=25% Similarity=0.565 Sum_probs=21.1
Q ss_pred CHHHHHHHHHHHHHcCCCCHHhhh
Q 021588 96 TEDEHRLFLLGLQKVGKGDWRGIS 119 (310)
Q Consensus 96 TeEEH~lFLeGLekyGkGdWk~IA 119 (310)
+-|.+..||++|+-.|-.+|.++.
T Consensus 24 sLek~~~~L~~Lea~GVDNW~Gy~ 47 (59)
T PHA00442 24 SLEKDNEFLKALRACGVDNWDGYM 47 (59)
T ss_pred HHHHhhHHHHHHHHcCCcchhhHH
Confidence 446678899999999999999997
No 64
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=42.03 E-value=40 Score=26.09 Aligned_cols=28 Identities=32% Similarity=0.643 Sum_probs=20.2
Q ss_pred CCHHhhhhhhcCC---CC--HHHHHHHHHHHHHH
Q 021588 113 GDWRGISRNFVKT---RT--PTQVASHAQKYFLR 141 (310)
Q Consensus 113 GdWk~IA~~~V~T---RT--~~QVrSHAQKYf~r 141 (310)
++|..|++. ++- -+ ..|++.|+.+|+..
T Consensus 58 ~~W~~va~~-lg~~~~~~~~~~~L~~~Y~~~L~~ 90 (92)
T PF01388_consen 58 KKWREVARK-LGFPPSSTSAAQQLRQHYEKYLLP 90 (92)
T ss_dssp TTHHHHHHH-TTS-TTSCHHHHHHHHHHHHHTHH
T ss_pred chHHHHHHH-hCCCCCCCcHHHHHHHHHHHHhHh
Confidence 579999964 322 22 47899999999764
No 65
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=41.65 E-value=74 Score=24.99 Aligned_cols=43 Identities=26% Similarity=0.457 Sum_probs=27.6
Q ss_pred HHHHHHHHHHcC-------CCCHHhhhhhhcC----CCCHHHHHHHHHHHHHHHh
Q 021588 100 HRLFLLGLQKVG-------KGDWRGISRNFVK----TRTPTQVASHAQKYFLRRF 143 (310)
Q Consensus 100 H~lFLeGLekyG-------kGdWk~IA~~~V~----TRT~~QVrSHAQKYf~r~~ 143 (310)
..+|. ++.+.| ...|..|++.+-- +....+++.|+++|+.-..
T Consensus 35 ~~Ly~-~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y~k~L~~yE 88 (93)
T smart00501 35 YRLYR-LVQERGGYDQVTKDKKWKEIARELGIPDTSTSAASSLRKHYERYLLPFE 88 (93)
T ss_pred HHHHH-HHHHccCHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHHHHHHhHHHH
Confidence 34444 456655 2579999963322 3346889999999976554
No 66
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=40.06 E-value=15 Score=34.15 Aligned_cols=18 Identities=44% Similarity=1.053 Sum_probs=16.6
Q ss_pred CCccCCCCCCCCCCCCCC
Q 021588 2 SRSCSQCGNNGHNSRTCA 19 (310)
Q Consensus 2 ~R~CS~Cgn~GHNsRTC~ 19 (310)
.++|--||++||-.|-||
T Consensus 60 ~~~C~nCg~~GH~~~DCP 77 (190)
T COG5082 60 NPVCFNCGQNGHLRRDCP 77 (190)
T ss_pred ccccchhcccCcccccCC
Confidence 368999999999999999
No 67
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=37.79 E-value=17 Score=23.64 Aligned_cols=9 Identities=33% Similarity=1.139 Sum_probs=7.6
Q ss_pred CCccCCCCC
Q 021588 2 SRSCSQCGN 10 (310)
Q Consensus 2 ~R~CS~Cgn 10 (310)
++.|.|||+
T Consensus 14 ~~~Cp~CG~ 22 (26)
T PF10571_consen 14 AKFCPHCGY 22 (26)
T ss_pred cCcCCCCCC
Confidence 578999986
No 68
>PTZ00368 universal minicircle sequence binding protein (UMSBP); Provisional
Probab=36.09 E-value=30 Score=29.28 Aligned_cols=19 Identities=63% Similarity=1.240 Sum_probs=12.4
Q ss_pred CccCCCCCCCCCCCCCCCC
Q 021588 3 RSCSQCGNNGHNSRTCAEA 21 (310)
Q Consensus 3 R~CS~Cgn~GHNsRTC~~~ 21 (310)
+.|..||..||-++.|+..
T Consensus 53 ~~C~~Cg~~GH~~~~Cp~~ 71 (148)
T PTZ00368 53 RSCYNCGKTGHLSRECPEA 71 (148)
T ss_pred cccCCCCCcCcCcccCCCc
Confidence 3566677777777776654
No 69
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=34.33 E-value=1.4e+02 Score=20.60 Aligned_cols=39 Identities=13% Similarity=0.146 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHH
Q 021588 98 DEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 139 (310)
Q Consensus 98 EEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQKYf 139 (310)
++++..+...-..|. .|+.||+ .+ ..|...|+.|.++=.
T Consensus 13 ~~~r~i~~l~~~~g~-s~~eIa~-~l-~~s~~~v~~~l~ra~ 51 (54)
T PF08281_consen 13 ERQREIFLLRYFQGM-SYAEIAE-IL-GISESTVKRRLRRAR 51 (54)
T ss_dssp HHHHHHHHHHHTS----HHHHHH-HC-TS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCc-CHHHHHH-HH-CcCHHHHHHHHHHHH
Confidence 444555555556676 9999994 44 488888888776543
No 70
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=29.99 E-value=69 Score=23.02 Aligned_cols=41 Identities=24% Similarity=0.225 Sum_probs=32.2
Q ss_pred HHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 021588 101 RLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRF 143 (310)
Q Consensus 101 ~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQKYf~r~~ 143 (310)
+++-+|+...|..++.-|. .+.+|+..|.+.=.+.|.....
T Consensus 4 ~~l~~a~~~~g~de~~li~--Il~~rs~~ql~~i~~~Y~~~~g 44 (66)
T PF00191_consen 4 ELLHAALKGWGTDEDVLIE--ILCTRSPAQLRAIKQAYKKKYG 44 (66)
T ss_dssp HHHHHHHSSSSSTHHHHHH--HHHHSTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHccCCCCChhHhhh--HHhhhcccccceeehhhhhhhH
Confidence 4778888888875666664 7889999999998888866544
No 71
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=29.17 E-value=28 Score=36.85 Aligned_cols=19 Identities=37% Similarity=0.732 Sum_probs=15.8
Q ss_pred CccCCCCCCCCCCCCCCCC
Q 021588 3 RSCSQCGNNGHNSRTCAEA 21 (310)
Q Consensus 3 R~CS~Cgn~GHNsRTC~~~ 21 (310)
+.|-+||-.||+++-|...
T Consensus 286 n~c~~cg~~gH~~~dc~~~ 304 (554)
T KOG0119|consen 286 NVCKICGPLGHISIDCKVN 304 (554)
T ss_pred ccccccCCcccccccCCCc
Confidence 4799999999999999854
No 72
>PF13696 zf-CCHC_2: Zinc knuckle
Probab=28.78 E-value=28 Score=24.00 Aligned_cols=19 Identities=32% Similarity=0.872 Sum_probs=16.9
Q ss_pred CccCCCCCCCCCCCCCCCC
Q 021588 3 RSCSQCGNNGHNSRTCAEA 21 (310)
Q Consensus 3 R~CS~Cgn~GHNsRTC~~~ 21 (310)
..|--|+.-||--+.||..
T Consensus 9 Y~C~~C~~~GH~i~dCP~~ 27 (32)
T PF13696_consen 9 YVCHRCGQKGHWIQDCPTN 27 (32)
T ss_pred CEeecCCCCCccHhHCCCC
Confidence 4699999999999999963
No 73
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=28.12 E-value=32 Score=27.25 Aligned_cols=13 Identities=15% Similarity=0.437 Sum_probs=7.9
Q ss_pred CccCHHHHHHHHH
Q 021588 93 VPWTEDEHRLFLL 105 (310)
Q Consensus 93 ~~WTeEEH~lFLe 105 (310)
+.||+|+++.++.
T Consensus 48 GiWT~eDD~~L~~ 60 (87)
T PF11626_consen 48 GIWTPEDDEMLRS 60 (87)
T ss_dssp T---HHHHHHHTS
T ss_pred CCcCHHHHHHHHc
Confidence 3499999999843
No 74
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=28.00 E-value=66 Score=33.33 Aligned_cols=50 Identities=12% Similarity=0.203 Sum_probs=39.7
Q ss_pred CccCHHHHHHHHHHHHHcCCCCHHhhhhh-----hcCCCCHHHHHHHHHHHHHHHh
Q 021588 93 VPWTEDEHRLFLLGLQKVGKGDWRGISRN-----FVKTRTPTQVASHAQKYFLRRF 143 (310)
Q Consensus 93 ~~WTeEEH~lFLeGLekyGkGdWk~IA~~-----~V~TRT~~QVrSHAQKYf~r~~ 143 (310)
..||.||-+-+.+..++|.- +|--||.. |-.+||......++-....++.
T Consensus 131 n~WskeETD~LF~lck~fDL-Rf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~ 185 (445)
T KOG2656|consen 131 NSWSKEETDYLFDLCKRFDL-RFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKLL 185 (445)
T ss_pred ccccHHHHHHHHHHHHhcCe-eEEEEeeccchhhccccccHHHHHHHHHHHHHHHH
Confidence 45999999999999999997 88888754 4455999999998754444444
No 75
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=27.91 E-value=27 Score=23.73 Aligned_cols=10 Identities=60% Similarity=1.561 Sum_probs=8.3
Q ss_pred CccCCCCCCC
Q 021588 3 RSCSQCGNNG 12 (310)
Q Consensus 3 R~CS~Cgn~G 12 (310)
++|+.||++|
T Consensus 4 ~~C~~C~~~~ 13 (33)
T PF08792_consen 4 KKCSKCGGNG 13 (33)
T ss_pred eEcCCCCCCe
Confidence 6799998887
No 76
>PTZ00368 universal minicircle sequence binding protein (UMSBP); Provisional
Probab=27.78 E-value=38 Score=28.70 Aligned_cols=17 Identities=53% Similarity=1.224 Sum_probs=11.8
Q ss_pred CccCCCCCCCCCCCCCC
Q 021588 3 RSCSQCGNNGHNSRTCA 19 (310)
Q Consensus 3 R~CS~Cgn~GHNsRTC~ 19 (310)
..|..||..||-++.|+
T Consensus 28 ~~C~~Cg~~GH~~~~Cp 44 (148)
T PTZ00368 28 RPCYKCGEPGHLSRECP 44 (148)
T ss_pred ccCccCCCCCcCcccCc
Confidence 35666888888666664
No 77
>PF13917 zf-CCHC_3: Zinc knuckle
Probab=25.01 E-value=41 Score=24.22 Aligned_cols=19 Identities=32% Similarity=0.906 Sum_probs=17.0
Q ss_pred CCccCCCCCCCCCCCCCCC
Q 021588 2 SRSCSQCGNNGHNSRTCAE 20 (310)
Q Consensus 2 ~R~CS~Cgn~GHNsRTC~~ 20 (310)
...|-.|+..||=..-|+.
T Consensus 4 ~~~CqkC~~~GH~tyeC~~ 22 (42)
T PF13917_consen 4 RVRCQKCGQKGHWTYECPN 22 (42)
T ss_pred CCcCcccCCCCcchhhCCC
Confidence 3689999999999999994
No 78
>PF05634 APO_RNA-bind: APO RNA-binding; InterPro: IPR008512 This family consists of plant APO (accumulation of photosystem 1) proteins.
Probab=24.32 E-value=53 Score=30.99 Aligned_cols=20 Identities=40% Similarity=0.926 Sum_probs=16.3
Q ss_pred CccCCC-----CCCCCCCCCCCCCC
Q 021588 3 RSCSQC-----GNNGHNSRTCAEAG 22 (310)
Q Consensus 3 R~CS~C-----gn~GHNsRTC~~~~ 22 (310)
..|.+| |.-||.-|||....
T Consensus 99 ~~C~~C~EVHVG~~GH~irtC~g~k 123 (204)
T PF05634_consen 99 KACGYCPEVHVGPVGHKIRTCGGFK 123 (204)
T ss_pred eecCCCCCeEECCCcccccccCCCC
Confidence 569999 67899999998543
No 79
>PF06397 Desulfoferrod_N: Desulfoferrodoxin, N-terminal domain; InterPro: IPR004462 This domain is found as essentially the full length of desulforedoxin, a 37-residue homodimeric non-haem iron protein. It is also found as the N-terminal domain of desulfoferrodoxin (rbo), a homodimeric non-haem iron protein with 2 Fe atoms per monomer in different oxidation states. This domain binds the ferric rather than the ferrous Fe of desulfoferrodoxin. Neelaredoxin, a monomeric blue non-haem iron protein, lacks this domain.; GO: 0005506 iron ion binding; PDB: 1DFX_A 1VZI_B 2JI2_D 1VZH_B 2JI3_C 2JI1_C 1VZG_A 1CFW_A 2LK5_B 1DHG_B ....
Probab=24.27 E-value=29 Score=24.37 Aligned_cols=8 Identities=50% Similarity=1.335 Sum_probs=3.9
Q ss_pred ccCCCCCC
Q 021588 4 SCSQCGNN 11 (310)
Q Consensus 4 ~CS~Cgn~ 11 (310)
||.+|||.
T Consensus 8 kC~~CGni 15 (36)
T PF06397_consen 8 KCEHCGNI 15 (36)
T ss_dssp E-TTT--E
T ss_pred EccCCCCE
Confidence 78999874
No 80
>TIGR02937 sigma70-ECF RNA polymerase sigma factor, sigma-70 family. Several PFAM models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.
Probab=24.01 E-value=2.3e+02 Score=21.72 Aligned_cols=45 Identities=13% Similarity=0.173 Sum_probs=28.0
Q ss_pred cCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 021588 95 WTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRF 143 (310)
Q Consensus 95 WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQKYf~r~~ 143 (310)
+++.|...|... -..|. .|..|| ..++. +...|+.+.++-..+++
T Consensus 111 L~~~~~~ii~~~-~~~g~-s~~eIA-~~l~~-s~~~v~~~~~~~~~kl~ 155 (158)
T TIGR02937 111 LPEREREVLVLR-YLEGL-SYKEIA-EILGI-SVGTVKRRLKRARKKLR 155 (158)
T ss_pred CCHHHHHHHhhH-HhcCC-CHHHHH-HHHCC-CHHHHHHHHHHHHHHHH
Confidence 566666655322 23465 899999 46665 67777776666555544
No 81
>KOG4400 consensus E3 ubiquitin ligase interacting with arginine methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=23.46 E-value=41 Score=31.23 Aligned_cols=18 Identities=44% Similarity=1.043 Sum_probs=15.8
Q ss_pred ccCCCCCCCCCCCCCCCC
Q 021588 4 SCSQCGNNGHNSRTCAEA 21 (310)
Q Consensus 4 ~CS~Cgn~GHNsRTC~~~ 21 (310)
+|-.||+.||=++-|+..
T Consensus 145 ~Cy~Cg~~GH~s~~C~~~ 162 (261)
T KOG4400|consen 145 KCYSCGEQGHISDDCPEN 162 (261)
T ss_pred ccCCCCcCCcchhhCCCC
Confidence 599999999999999953
No 82
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=21.40 E-value=2.4e+02 Score=19.68 Aligned_cols=38 Identities=16% Similarity=0.236 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHH
Q 021588 98 DEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQK 137 (310)
Q Consensus 98 EEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQK 137 (310)
+-+.+.|..|++-|+-.|..||+ .++- |...|..+.++
T Consensus 3 ~~D~~Il~~Lq~d~r~s~~~la~-~lgl-S~~~v~~Ri~r 40 (42)
T PF13404_consen 3 ELDRKILRLLQEDGRRSYAELAE-ELGL-SESTVRRRIRR 40 (42)
T ss_dssp HHHHHHHHHHHH-TTS-HHHHHH-HHTS--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHH-HHCc-CHHHHHHHHHH
Confidence 55789999999999999999994 5543 56666666554
No 83
>PF06170 DUF983: Protein of unknown function (DUF983); InterPro: IPR009325 This family consists of several bacterial proteins of unknown function.
Probab=21.17 E-value=42 Score=27.20 Aligned_cols=16 Identities=25% Similarity=0.725 Sum_probs=10.5
Q ss_pred CCCccCCCCCCCCCCC
Q 021588 1 MSRSCSQCGNNGHNSR 16 (310)
Q Consensus 1 m~R~CS~Cgn~GHNsR 16 (310)
|..+|++||..=+--|
T Consensus 7 ~~~~C~~CG~d~~~~~ 22 (86)
T PF06170_consen 7 VAPRCPHCGLDYSHAR 22 (86)
T ss_pred CCCcccccCCccccCC
Confidence 4568999997543333
No 84
>PLN00111 accumulation of photosystem one; Provisional
Probab=20.56 E-value=65 Score=33.13 Aligned_cols=20 Identities=45% Similarity=0.989 Sum_probs=16.3
Q ss_pred CccCCC-----CCCCCCCCCCCCCC
Q 021588 3 RSCSQC-----GNNGHNSRTCAEAG 22 (310)
Q Consensus 3 R~CS~C-----gn~GHNsRTC~~~~ 22 (310)
+.|.+| |.-||.-|||....
T Consensus 121 ~~C~~C~EVHVG~~GH~irtC~g~k 145 (399)
T PLN00111 121 HACKFCSEVHVGKVGHLIRTCRGPG 145 (399)
T ss_pred eecCcCCceeECCCCccccccCCcc
Confidence 578888 57899999998544
No 85
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=20.38 E-value=1.8e+02 Score=24.76 Aligned_cols=40 Identities=13% Similarity=0.229 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHH
Q 021588 97 EDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 138 (310)
Q Consensus 97 eEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQKY 138 (310)
++.++++|+.|++=|+-.|..||+ -+ .-+...|+.+.++-
T Consensus 8 D~~D~~Il~~Lq~d~R~s~~eiA~-~l-glS~~tV~~Ri~rL 47 (153)
T PRK11179 8 DNLDRGILEALMENARTPYAELAK-QF-GVSPGTIHVRVEKM 47 (153)
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHH-HH-CcCHHHHHHHHHHH
Confidence 467899999999999999999995 44 45677777777654
Done!