Query 021588
Match_columns 310
No_of_seqs 217 out of 556
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 06:20:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021588.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021588hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cu7_A KIAA1915 protein; nucle 99.7 1.7E-16 6E-21 119.4 8.4 64 91-156 8-71 (72)
2 2yus_A SWI/SNF-related matrix- 99.6 8.6E-16 2.9E-20 119.1 4.1 48 91-140 17-64 (79)
3 2yum_A ZZZ3 protein, zinc fing 99.6 2.7E-15 9.2E-20 113.1 5.8 53 91-144 7-64 (75)
4 2elk_A SPCC24B10.08C protein; 99.6 4.3E-15 1.5E-19 108.2 6.3 47 93-140 10-57 (58)
5 1x41_A Transcriptional adaptor 99.5 8.9E-15 3E-19 106.8 5.6 49 92-141 8-56 (60)
6 1guu_A C-MYB, MYB proto-oncoge 99.5 9.3E-14 3.2E-18 97.9 6.4 47 92-139 3-49 (52)
7 2eqr_A N-COR1, N-COR, nuclear 99.4 2.1E-13 7.2E-18 100.2 7.1 55 84-143 4-58 (61)
8 1gvd_A MYB proto-oncogene prot 99.4 1.4E-13 4.9E-18 97.1 5.5 47 92-139 3-49 (52)
9 2d9a_A B-MYB, MYB-related prot 99.4 3.7E-13 1.3E-17 97.5 5.8 48 91-139 7-54 (60)
10 1ity_A TRF1; helix-turn-helix, 99.4 9.2E-13 3.2E-17 98.1 7.3 54 87-141 5-60 (69)
11 2dim_A Cell division cycle 5-l 99.3 1E-12 3.5E-17 97.9 6.2 50 90-140 7-56 (70)
12 1w0t_A Telomeric repeat bindin 99.3 1.4E-12 4.9E-17 92.6 6.6 47 93-140 3-51 (53)
13 3sjm_A Telomeric repeat-bindin 99.3 3E-12 1E-16 95.4 6.7 46 93-139 12-59 (64)
14 2yqk_A Arginine-glutamic acid 99.2 1.5E-11 5.1E-16 91.3 7.4 54 86-143 3-56 (63)
15 2iw5_B Protein corest, REST co 99.2 3.8E-12 1.3E-16 116.6 4.6 51 89-141 130-180 (235)
16 2din_A Cell division cycle 5-l 99.2 2.5E-11 8.4E-16 89.5 7.2 50 92-144 9-58 (66)
17 2cqr_A RSGI RUH-043, DNAJ homo 99.2 1.9E-11 6.4E-16 93.9 5.8 49 90-139 16-67 (73)
18 2ltp_A Nuclear receptor corepr 98.8 1.8E-12 6.3E-17 101.7 0.0 48 93-142 17-64 (89)
19 1irz_A ARR10-B; helix-turn-hel 99.2 3.8E-11 1.3E-15 90.9 7.1 56 88-145 3-63 (64)
20 2xag_B REST corepressor 1; ami 99.2 1.1E-11 3.7E-16 123.1 4.9 51 89-141 377-427 (482)
21 1gv2_A C-MYB, MYB proto-oncoge 99.2 2.9E-11 1E-15 95.2 5.5 46 93-139 5-50 (105)
22 2ckx_A NGTRF1, telomere bindin 99.1 1.1E-10 3.9E-15 91.5 7.6 50 94-143 2-54 (83)
23 3osg_A MYB21; transcription-DN 99.1 8E-11 2.7E-15 96.3 6.5 51 87-139 6-56 (126)
24 2k9n_A MYB24; R2R3 domain, DNA 99.1 6E-11 2.1E-15 94.4 5.7 46 93-139 2-47 (107)
25 2crg_A Metastasis associated p 99.1 1.7E-10 5.7E-15 87.4 7.3 46 89-135 5-50 (70)
26 2aje_A Telomere repeat-binding 99.1 2.1E-10 7.3E-15 93.7 7.3 56 87-142 8-66 (105)
27 3zqc_A MYB3; transcription-DNA 99.1 1.1E-10 3.9E-15 95.8 5.6 46 93-139 3-48 (131)
28 1h8a_C AMV V-MYB, MYB transfor 99.1 1.5E-10 5E-15 94.5 5.7 47 92-139 27-73 (128)
29 2k9n_A MYB24; R2R3 domain, DNA 99.0 3E-10 1E-14 90.4 7.0 52 91-144 52-103 (107)
30 2cjj_A Radialis; plant develop 99.0 2.3E-10 7.9E-15 91.5 6.2 50 93-143 9-61 (93)
31 2roh_A RTBP1, telomere binding 99.0 6.3E-10 2.2E-14 93.1 8.4 57 87-143 26-85 (122)
32 2juh_A Telomere binding protei 99.0 6.7E-10 2.3E-14 92.9 6.9 56 88-143 13-71 (121)
33 1gv2_A C-MYB, MYB proto-oncoge 99.0 4.7E-10 1.6E-14 88.3 5.3 47 91-139 55-101 (105)
34 3osg_A MYB21; transcription-DN 99.0 9.7E-10 3.3E-14 89.9 7.1 51 91-143 61-111 (126)
35 1wgx_A KIAA1903 protein; MYB D 99.0 3.7E-10 1.3E-14 87.3 4.2 45 93-138 9-56 (73)
36 2llk_A Cyclin-D-binding MYB-li 98.9 1.6E-09 5.5E-14 83.2 5.9 43 91-136 22-64 (73)
37 2cqq_A RSGI RUH-037, DNAJ homo 98.9 2.1E-09 7.4E-14 82.1 6.3 45 92-138 8-55 (72)
38 3zqc_A MYB3; transcription-DNA 98.9 1.4E-09 4.8E-14 89.3 5.5 51 92-144 54-104 (131)
39 1h89_C C-MYB, MYB proto-oncoge 98.9 2E-09 6.7E-14 90.6 5.5 48 91-139 57-104 (159)
40 1h8a_C AMV V-MYB, MYB transfor 98.8 1.8E-09 6.2E-14 88.0 4.5 47 91-139 78-124 (128)
41 4a69_C Nuclear receptor corepr 98.7 6.9E-09 2.4E-13 82.6 4.3 46 88-135 39-84 (94)
42 4eef_G F-HB80.4, designed hema 98.7 1.7E-09 5.9E-14 84.2 0.5 48 89-137 17-67 (74)
43 1h89_C C-MYB, MYB proto-oncoge 98.7 1.1E-08 3.7E-13 86.1 4.1 47 90-138 108-154 (159)
44 1x58_A Hypothetical protein 49 98.6 1E-07 3.5E-12 72.0 6.1 44 93-137 9-54 (62)
45 1ign_A Protein (RAP1); RAP1,ye 98.3 2.4E-07 8.3E-12 85.5 4.0 49 93-142 9-62 (246)
46 1ofc_X ISWI protein; nuclear p 97.6 4.9E-05 1.7E-09 71.8 5.7 48 91-138 211-272 (304)
47 1fex_A TRF2-interacting telome 97.5 9.5E-05 3.2E-09 54.4 4.4 47 93-139 3-57 (59)
48 1ofc_X ISWI protein; nuclear p 97.4 0.00027 9.1E-09 66.9 6.7 52 91-143 108-160 (304)
49 2xag_B REST corepressor 1; ami 97.3 2.9E-05 9.8E-10 77.5 0.0 41 93-135 190-230 (482)
50 4b4c_A Chromodomain-helicase-D 97.2 0.00056 1.9E-08 59.1 6.5 51 92-143 134-197 (211)
51 3hm5_A DNA methyltransferase 1 97.0 0.0013 4.5E-08 52.8 6.7 50 93-144 31-85 (93)
52 2ebi_A DNA binding protein GT- 96.7 0.0016 5.6E-08 49.6 4.8 57 89-146 1-70 (86)
53 1ug2_A 2610100B20RIK gene prod 96.6 0.0072 2.5E-07 49.0 7.7 53 86-139 27-81 (95)
54 4b4c_A Chromodomain-helicase-D 96.6 0.0031 1E-07 54.5 5.8 54 89-142 4-60 (211)
55 2xb0_X Chromo domain-containin 95.7 0.0061 2.1E-07 56.7 3.4 27 93-119 169-195 (270)
56 4iej_A DNA methyltransferase 1 95.4 0.035 1.2E-06 44.7 6.7 51 94-145 32-86 (93)
57 2y9y_A Imitation switch protei 95.4 0.018 6.2E-07 56.0 5.7 49 94-143 125-174 (374)
58 2lr8_A CAsp8-associated protei 94.1 0.0036 1.2E-07 48.3 0.0 46 91-138 13-60 (70)
59 2y9y_A Imitation switch protei 94.4 0.055 1.9E-06 52.6 6.2 51 91-142 227-291 (374)
60 1dsq_A Nucleic acid binding pr 94.3 0.022 7.5E-07 35.4 2.1 20 2-21 2-21 (26)
61 2hzd_A Transcriptional enhance 94.2 0.066 2.3E-06 42.3 5.1 47 90-137 4-70 (82)
62 1nc8_A Nucleocapsid protein; H 88.9 0.15 5.2E-06 32.1 1.4 18 3-20 7-24 (29)
63 1a6b_B Momulv, zinc finger pro 87.9 0.24 8.2E-06 34.0 1.9 20 3-22 11-30 (40)
64 1ign_A Protein (RAP1); RAP1,ye 84.0 1.6 5.5E-05 40.5 5.9 28 114-142 173-200 (246)
65 2ihx_A Nucleocapsid (NC) prote 83.1 0.56 1.9E-05 33.8 2.0 20 3-22 31-50 (61)
66 1u6p_A GAG polyprotein; MLV, A 82.8 0.44 1.5E-05 34.8 1.4 20 3-22 24-43 (56)
67 2a51_A Nucleocapsid protein; s 82.0 0.78 2.7E-05 30.2 2.2 16 4-19 2-17 (39)
68 2bl6_A Nucleocapsid protein P1 81.3 0.62 2.1E-05 30.4 1.6 17 4-20 2-18 (37)
69 2bl6_A Nucleocapsid protein P1 79.9 0.95 3.2E-05 29.5 2.1 17 4-20 21-37 (37)
70 1a1t_A Nucleocapsid protein; s 78.4 0.91 3.1E-05 31.8 1.7 17 4-20 14-30 (55)
71 2ihx_A Nucleocapsid (NC) prote 77.8 1 3.4E-05 32.5 1.9 21 1-21 3-23 (61)
72 2xb0_X Chromo domain-containin 77.4 4.8 0.00016 37.3 6.7 43 94-136 5-50 (270)
73 2ec7_A GAG polyprotein (PR55GA 76.6 1.3 4.3E-05 30.7 2.0 18 3-20 7-24 (49)
74 2ec7_A GAG polyprotein (PR55GA 76.4 1.2 4.1E-05 30.8 1.9 19 3-21 28-46 (49)
75 2a51_A Nucleocapsid protein; s 75.7 1.2 4.1E-05 29.3 1.6 15 5-19 24-38 (39)
76 1a1t_A Nucleocapsid protein; s 72.7 1.4 4.9E-05 30.7 1.5 19 3-21 34-52 (55)
77 1cl4_A Protein (GAG polyprotei 70.7 0.87 3E-05 32.4 0.0 20 2-21 1-20 (60)
78 1cl4_A Protein (GAG polyprotei 70.3 2.4 8.3E-05 30.0 2.3 21 2-22 30-50 (60)
79 3nyb_B Protein AIR2; polya RNA 65.7 3.2 0.00011 32.1 2.3 20 3-22 47-66 (83)
80 2cqf_A RNA-binding protein LIN 63.9 3.5 0.00012 29.9 2.1 19 3-21 30-48 (63)
81 2cqf_A RNA-binding protein LIN 63.8 3.6 0.00012 29.8 2.1 18 3-20 8-25 (63)
82 2li8_A Protein LIN-28 homolog 62.3 3.5 0.00012 31.1 1.9 17 4-20 48-64 (74)
83 2li8_A Protein LIN-28 homolog 60.2 4.3 0.00015 30.6 2.0 18 3-20 25-42 (74)
84 3ts2_A Protein LIN-28 homolog 57.9 4.1 0.00014 34.2 1.8 18 3-20 98-115 (148)
85 2lli_A Protein AIR2; RNA surve 56.1 5.7 0.00019 31.6 2.2 20 3-22 65-84 (124)
86 3nyb_B Protein AIR2; polya RNA 54.7 4.2 0.00014 31.4 1.2 19 3-21 6-24 (83)
87 2li6_A SWI/SNF chromatin-remod 54.4 13 0.00045 29.7 4.1 30 113-143 71-100 (116)
88 2ysa_A Retinoblastoma-binding 51.5 6.7 0.00023 28.4 1.8 20 2-21 7-26 (55)
89 2lli_A Protein AIR2; RNA surve 46.9 9.7 0.00033 30.3 2.2 18 3-20 5-22 (124)
90 2jrz_A Histone demethylase jar 46.4 20 0.0007 28.6 4.1 31 113-144 62-96 (117)
91 2lm1_A Lysine-specific demethy 46.0 25 0.00086 27.3 4.4 31 113-144 66-100 (107)
92 2eqy_A RBP2 like, jumonji, at 42.9 30 0.001 27.9 4.6 32 113-145 64-99 (122)
93 2lc3_A E3 ubiquitin-protein li 42.8 51 0.0018 26.3 5.7 55 87-142 8-80 (88)
94 2cxy_A BAF250B subunit, HBAF25 41.6 25 0.00085 28.4 3.9 32 113-145 73-108 (125)
95 1c20_A DEAD ringer protein; DN 41.3 25 0.00086 28.4 3.9 34 113-146 74-111 (128)
96 1kkx_A Transcription regulator 41.1 20 0.00067 29.3 3.2 31 113-144 70-100 (123)
97 2rq5_A Protein jumonji; develo 40.8 25 0.00084 28.8 3.8 33 113-145 64-100 (121)
98 1ig6_A MRF-2, modulator recogn 38.0 18 0.00062 28.3 2.5 29 113-141 55-87 (107)
99 2kk0_A AT-rich interactive dom 33.5 34 0.0012 28.4 3.6 33 113-145 86-122 (145)
100 3ukw_C Bimax1 peptide; arm rep 26.4 12 0.0004 24.0 -0.3 17 84-100 3-19 (28)
101 2jxj_A Histone demethylase jar 23.8 59 0.002 24.7 3.1 30 113-143 58-91 (96)
102 3o2i_A Uncharacterized protein 21.7 55 0.0019 27.1 2.7 26 92-117 48-74 (125)
103 1x3u_A Transcriptional regulat 20.4 2.1E+02 0.0071 19.6 5.3 45 95-144 17-61 (79)
No 1
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.66 E-value=1.7e-16 Score=119.36 Aligned_cols=64 Identities=33% Similarity=0.543 Sum_probs=59.0
Q ss_pred CCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHHHHHhcccccCCCCceee
Q 021588 91 RGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRFNQNKRRRRSSLFD 156 (310)
Q Consensus 91 kg~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQKYf~r~~~~~k~~rR~sL~d 156 (310)
+..+||+|||++|++++++||. +|..|| .+|++||..||+.||++||.+..+.+..+++.+|++
T Consensus 8 ~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia-~~~~~Rt~~q~k~r~~~~l~~~~~~g~~~~~~si~s 71 (72)
T 2cu7_A 8 YSVKWTIEEKELFEQGLAKFGR-RWTKIS-KLIGSRTVLQVKSYARQYFKNKVKCGLDKETPNQKT 71 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHTCS-CHHHHH-HHHSSSCHHHHHHHHHHHHHHHSCSCTTCCCSCCCC
T ss_pred CCCCCCHHHHHHHHHHHHHHCc-CHHHHH-HHcCCCCHHHHHHHHHHHHHHHHhcCCCCCcccccc
Confidence 4457999999999999999998 999999 699999999999999999999988888888888875
No 2
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.57 E-value=8.6e-16 Score=119.07 Aligned_cols=48 Identities=31% Similarity=0.510 Sum_probs=44.3
Q ss_pred CCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHHH
Q 021588 91 RGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFL 140 (310)
Q Consensus 91 kg~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQKYf~ 140 (310)
...+||+|||++||+||++|| ++|..|| .+|++||..||+.||++|++
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA-~~v~~RT~~qcr~r~~~~~i 64 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYK-DDWNKVS-EHVGSRTQDECILHFLRLPI 64 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSS-SCHHHHH-HHHSSCCHHHHHHHHTTSCC
T ss_pred cCCCcCHHHHHHHHHHHHHhC-CCHHHHH-HHcCCCCHHHHHHHHHHhcc
Confidence 367899999999999999999 7999999 69999999999999998753
No 3
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=2.7e-15 Score=113.07 Aligned_cols=53 Identities=32% Similarity=0.465 Sum_probs=47.6
Q ss_pred CCCccCHHHHHHHHHHHHHcCC-----CCHHhhhhhhcCCCCHHHHHHHHHHHHHHHhc
Q 021588 91 RGVPWTEDEHRLFLLGLQKVGK-----GDWRGISRNFVKTRTPTQVASHAQKYFLRRFN 144 (310)
Q Consensus 91 kg~~WTeEEH~lFLeGLekyGk-----GdWk~IA~~~V~TRT~~QVrSHAQKYf~r~~~ 144 (310)
+..+||+|||++|+++|++||. ++|..|| .+|++||..||+.||++||.+..+
T Consensus 7 ~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA-~~~~~Rt~~qcr~r~~~~l~~~~k 64 (75)
T 2yum_A 7 GNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIA-DELGNRTAKQVASQVQKYFIKLTK 64 (75)
T ss_dssp CSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHH-HHHSSSCHHHHHHHHHHHHGGGST
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHH-HHhCCCCHHHHHHHHHHHHHHHHh
Confidence 3457999999999999999996 6999999 699999999999999999986543
No 4
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.56 E-value=4.3e-15 Score=108.16 Aligned_cols=47 Identities=28% Similarity=0.610 Sum_probs=44.6
Q ss_pred CccCHHHHHHHHHHHHHcCCCCHHhhhhhhcC-CCCHHHHHHHHHHHHH
Q 021588 93 VPWTEDEHRLFLLGLQKVGKGDWRGISRNFVK-TRTPTQVASHAQKYFL 140 (310)
Q Consensus 93 ~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~-TRT~~QVrSHAQKYf~ 140 (310)
.+||+|||++|++++++||.++|..|| .+|+ +||..||+.||++||+
T Consensus 10 ~~WT~eED~~L~~~v~~~G~~~W~~IA-~~~~~~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 10 ENWGADEELLLIDACETLGLGNWADIA-DYVGNARTKEECRDHYLKTYI 57 (58)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCHHHHH-HHHCSSCCHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHH-HHHCCCCCHHHHHHHHHHHcc
Confidence 369999999999999999988999999 6999 9999999999999986
No 5
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.52 E-value=8.9e-15 Score=106.78 Aligned_cols=49 Identities=29% Similarity=0.552 Sum_probs=45.3
Q ss_pred CCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHHHH
Q 021588 92 GVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLR 141 (310)
Q Consensus 92 g~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQKYf~r 141 (310)
..+||+|||++|++++++||.++|..|| .+|++||..||+.||++|++.
T Consensus 8 ~~~WT~eED~~L~~~v~~~G~~~W~~Ia-~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 8 DPSWTAQEEMALLEAVMDCGFGNWQDVA-NQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CSSSCHHHHHHHHHHHHHTCTTCHHHHH-HHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHHCcCcHHHHH-HHhCCCCHHHHHHHHHHHccC
Confidence 3469999999999999999988999999 699999999999999999863
No 6
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.46 E-value=9.3e-14 Score=97.91 Aligned_cols=47 Identities=28% Similarity=0.495 Sum_probs=44.2
Q ss_pred CCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHH
Q 021588 92 GVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 139 (310)
Q Consensus 92 g~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQKYf 139 (310)
..+||+||+++|++++++||.++|..|| .+|++||..||+.||++|+
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia-~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTDDWKVIA-NYLPNRTDVQCQHRWQKVL 49 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHH-HTSTTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHH-HHcCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999999999 6999999999999999986
No 7
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=2.1e-13 Score=100.25 Aligned_cols=55 Identities=20% Similarity=0.387 Sum_probs=47.7
Q ss_pred cCCccccCCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 021588 84 GRSRERKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRF 143 (310)
Q Consensus 84 ~~~r~rKkg~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQKYf~r~~ 143 (310)
+..++|+...+||+|||++|++||.+||+ +|..|| .+|++||..||+.| ||+..+
T Consensus 4 ~~~~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia-~~l~~rt~~~~v~~---Yy~~Kk 58 (61)
T 2eqr_A 4 GSSGDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIA-SYLERKSVPDCVLY---YYLTKK 58 (61)
T ss_dssp SCCCCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHH-HHCTTSCHHHHHHH---HHHHTC
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCC-CHHHHH-HHcCCCCHHHHHHH---HHHhcC
Confidence 45677888899999999999999999997 999999 79999999999876 555433
No 8
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.43 E-value=1.4e-13 Score=97.12 Aligned_cols=47 Identities=26% Similarity=0.432 Sum_probs=43.8
Q ss_pred CCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHH
Q 021588 92 GVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 139 (310)
Q Consensus 92 g~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQKYf 139 (310)
..+||+||+++|++++++||.++|..|| .+|++||..||+.||++|+
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~~W~~Ia-~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIA-KHLKGRIGKQCRERWHNHL 49 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTTCHHHHH-TTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcChHHHHH-HHcCCCCHHHHHHHHHHHc
Confidence 3469999999999999999988999999 6999999999999999885
No 9
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.39 E-value=3.7e-13 Score=97.51 Aligned_cols=48 Identities=21% Similarity=0.395 Sum_probs=44.2
Q ss_pred CCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHH
Q 021588 91 RGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 139 (310)
Q Consensus 91 kg~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQKYf 139 (310)
+..+||+||+++|++++++||.++|..|| .+|++||..||+.||++|+
T Consensus 7 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia-~~~~~Rt~~qcr~Rw~~~l 54 (60)
T 2d9a_A 7 GKVKWTHEEDEQLRALVRQFGQQDWKFLA-SHFPNRTDQQCQYRWLRVL 54 (60)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCTTCHHHHH-HHCSSSCHHHHHHHHHHTS
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHH-HHccCCCHHHHHHHHHHHc
Confidence 34579999999999999999987999999 6999999999999999885
No 10
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.38 E-value=9.2e-13 Score=98.11 Aligned_cols=54 Identities=20% Similarity=0.362 Sum_probs=48.1
Q ss_pred ccccCCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcC--CCCHHHHHHHHHHHHHH
Q 021588 87 RERKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVK--TRTPTQVASHAQKYFLR 141 (310)
Q Consensus 87 r~rKkg~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~--TRT~~QVrSHAQKYf~r 141 (310)
..+++..+||+||+++|++++++||.++|..|| .+++ +||..||+.+|.+|+..
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia-~~~~~~~Rt~~qcr~Rw~~~l~p 60 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKIL-LHYKFNNRTSVMLKDRWRTMKKL 60 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHH-HHSCCSSCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHH-HHcCcCCCCHHHHHHHHHHHcCC
Confidence 345566789999999999999999988999999 6999 99999999999988753
No 11
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=1e-12 Score=97.93 Aligned_cols=50 Identities=18% Similarity=0.456 Sum_probs=45.2
Q ss_pred cCCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHHH
Q 021588 90 KRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFL 140 (310)
Q Consensus 90 Kkg~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQKYf~ 140 (310)
.+..+||+||+++|++++++||.++|..|| .+|++||..||+.||++|+.
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia-~~l~~Rt~~qcr~Rw~~~L~ 56 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGKNQWSRIA-SLLHRKSAKQCKARWYEWLD 56 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCSSCHHHHH-HHSTTCCHHHHHHHHHHTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCCHHHHH-HHhcCCCHHHHHHHHHHHcC
Confidence 344579999999999999999988999999 69999999999999998863
No 12
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.35 E-value=1.4e-12 Score=92.64 Aligned_cols=47 Identities=23% Similarity=0.398 Sum_probs=43.7
Q ss_pred CccCHHHHHHHHHHHHHcCCCCHHhhhhhhcC--CCCHHHHHHHHHHHHH
Q 021588 93 VPWTEDEHRLFLLGLQKVGKGDWRGISRNFVK--TRTPTQVASHAQKYFL 140 (310)
Q Consensus 93 ~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~--TRT~~QVrSHAQKYf~ 140 (310)
.+||+||++++++++++||.++|..|| .+++ +||..||+.+|.+|..
T Consensus 3 ~~WT~eEd~~L~~~v~~~G~~~W~~Ia-~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 3 QAWLWEEDKNLRSGVRKYGEGNWSKIL-LHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCHHHHH-HHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHH-HHcCCCCCCHHHHHHHHHHHHc
Confidence 479999999999999999988999999 6899 9999999999998863
No 13
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.31 E-value=3e-12 Score=95.42 Aligned_cols=46 Identities=28% Similarity=0.484 Sum_probs=41.7
Q ss_pred CccCHHHHHHHHHHHHHcCCCCHHhhhhhhcC--CCCHHHHHHHHHHHH
Q 021588 93 VPWTEDEHRLFLLGLQKVGKGDWRGISRNFVK--TRTPTQVASHAQKYF 139 (310)
Q Consensus 93 ~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~--TRT~~QVrSHAQKYf 139 (310)
.+||+||+++|++++++||.++|..|| .+++ +||..||+.+|.+|.
T Consensus 12 ~~WT~eED~~L~~~V~~~G~~~W~~Ia-~~~~~~~Rt~~qcr~Rw~nl~ 59 (64)
T 3sjm_A 12 QKWTVEESEWVKAGVQKYGEGNWAAIS-KNYPFVNRTAVMIKDRWRTMK 59 (64)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCHHHHH-HHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHccCCCchHHHH-hhcCCCCCCHHHHHHHHHHHh
Confidence 469999999999999999999999999 4654 999999999998875
No 14
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=1.5e-11 Score=91.26 Aligned_cols=54 Identities=24% Similarity=0.458 Sum_probs=44.5
Q ss_pred CccccCCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 021588 86 SRERKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRF 143 (310)
Q Consensus 86 ~r~rKkg~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQKYf~r~~ 143 (310)
.+++.+...||+||+++|++||.+||+ +|..|++++|++||..||.. -||.+.+
T Consensus 3 ~~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~---fYY~wKk 56 (63)
T 2yqk_A 3 SGSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLPNKETGELIT---FYYYWKK 56 (63)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCTTSCHHHHHH---HHHHHHC
T ss_pred CCCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCcHHHHHH---HHhcccC
Confidence 345556678999999999999999999 99999954899999999965 4565543
No 15
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=99.24 E-value=3.8e-12 Score=116.62 Aligned_cols=51 Identities=27% Similarity=0.500 Sum_probs=45.8
Q ss_pred ccCCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHHHH
Q 021588 89 RKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLR 141 (310)
Q Consensus 89 rKkg~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQKYf~r 141 (310)
.+...+||+||+++|++||.+||+ ||..|| .+|+|||..||+.||++|..|
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kYGK-DW~~IA-k~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKYGR-DFQAIS-DVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHSS-CHHHHH-HHHSSCCHHHHHHHHHHTTTT
T ss_pred CccCCCCCHHHHHHHHHHHHHHCc-CHHHHH-HHcCCCCHHHHHHHHHHHHHH
Confidence 345678999999999999999998 999999 699999999999999887543
No 16
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=2.5e-11 Score=89.52 Aligned_cols=50 Identities=20% Similarity=0.361 Sum_probs=44.3
Q ss_pred CCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHHHHHhc
Q 021588 92 GVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRFN 144 (310)
Q Consensus 92 g~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQKYf~r~~~ 144 (310)
..+||.||+++|++++++||. +|..||+ ++ .||..||+.||++|+....+
T Consensus 9 k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~ 58 (66)
T 2din_A 9 KTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQ 58 (66)
T ss_dssp CCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhc
Confidence 346999999999999999998 9999995 66 49999999999999877654
No 17
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.19 E-value=1.9e-11 Score=93.90 Aligned_cols=49 Identities=20% Similarity=0.462 Sum_probs=43.7
Q ss_pred cCCCccCHHHHHHHHHHHHHcCC---CCHHhhhhhhcCCCCHHHHHHHHHHHH
Q 021588 90 KRGVPWTEDEHRLFLLGLQKVGK---GDWRGISRNFVKTRTPTQVASHAQKYF 139 (310)
Q Consensus 90 Kkg~~WTeEEH~lFLeGLekyGk---GdWk~IA~~~V~TRT~~QVrSHAQKYf 139 (310)
....+||.||+++|+++|++||+ .+|..|| .+|++||..||+.||+++.
T Consensus 16 ~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA-~~vpGRT~~qcr~Ry~~L~ 67 (73)
T 2cqr_A 16 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIA-RCVPSKSKEDCIARYKLLV 67 (73)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHG-GGCSSSCHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHH-HHcCCCCHHHHHHHHHHHH
Confidence 34567999999999999999995 4899999 7999999999999998664
No 18
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.82 E-value=1.8e-12 Score=101.68 Aligned_cols=48 Identities=29% Similarity=0.494 Sum_probs=44.5
Q ss_pred CccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHHHHH
Q 021588 93 VPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRR 142 (310)
Q Consensus 93 ~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQKYf~r~ 142 (310)
.+||+||+++|++++++||. +|..|| .+|++||..||+.||++|+.+.
T Consensus 17 ~~WT~eEd~~l~~~~~~~G~-~W~~IA-~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 17 QGWTEEEMGTAKKGLLEHGR-NWSAIA-RMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 46999999999999999998 899999 6999999999999999887654
No 19
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.18 E-value=3.8e-11 Score=90.93 Aligned_cols=56 Identities=29% Similarity=0.428 Sum_probs=48.2
Q ss_pred cccCCCccCHHHHHHHHHHHHHcCCCC---HHhhhhhhcC--CCCHHHHHHHHHHHHHHHhcc
Q 021588 88 ERKRGVPWTEDEHRLFLLGLQKVGKGD---WRGISRNFVK--TRTPTQVASHAQKYFLRRFNQ 145 (310)
Q Consensus 88 ~rKkg~~WTeEEH~lFLeGLekyGkGd---Wk~IA~~~V~--TRT~~QVrSHAQKYf~r~~~~ 145 (310)
.+|....||+|+|+.|++|++++|. + |+.|. ++|+ ..|..||+||.|||++++++.
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~-~~AtPk~Il-~~M~v~gLT~~~VkSHLQKYR~~l~r~ 63 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKIL-DLMNVDKLTRENVASHLQKFRVALKKV 63 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHH-HHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCC-CCCCcHHHH-HHcCCCCCCHHHHHHHHHHHHHHHHcc
Confidence 4667788999999999999999993 4 89998 5765 579999999999999988763
No 20
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=99.18 E-value=1.1e-11 Score=123.08 Aligned_cols=51 Identities=27% Similarity=0.500 Sum_probs=46.2
Q ss_pred ccCCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHHHH
Q 021588 89 RKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLR 141 (310)
Q Consensus 89 rKkg~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQKYf~r 141 (310)
.+...+||+||+++|++||.+||+ ||+.|| .+|+|||..||++|+++|+.|
T Consensus 377 ~~~~~~WT~eE~~~f~~al~~yGk-dw~~IA-~~VgTKT~~Qvk~fy~~~kkr 427 (482)
T 2xag_B 377 QKCNARWTTEEQLLAVQAIRKYGR-DFQAIS-DVIGNKSVVQVKNFFVNYRRR 427 (482)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHTT-CHHHHH-HHHSSCCHHHHHHHHHHTTTT
T ss_pred cccCCCCCHHHHHHHHHHHHHHCc-CHHHHH-HHhCCCCHHHHHHHHHHHHHH
Confidence 355788999999999999999998 999999 699999999999999887544
No 21
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.16 E-value=2.9e-11 Score=95.23 Aligned_cols=46 Identities=26% Similarity=0.435 Sum_probs=43.5
Q ss_pred CccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHH
Q 021588 93 VPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 139 (310)
Q Consensus 93 ~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQKYf 139 (310)
.+||+||+++|++++++||.++|..|| .+|++||..||+.||++|+
T Consensus 5 ~~WT~eED~~L~~~v~~~g~~~W~~Ia-~~l~~Rt~~qcr~Rw~~~l 50 (105)
T 1gv2_A 5 GPWTKEEDQRVIKLVQKYGPKRWSVIA-KHLKGRIGKQCRERWHNHL 50 (105)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHH-TTSTTCCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCcHHHHh-hhhcCCCHHHHHHHHHhcc
Confidence 469999999999999999998999999 6999999999999999885
No 22
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.13 E-value=1.1e-10 Score=91.46 Aligned_cols=50 Identities=16% Similarity=0.333 Sum_probs=45.2
Q ss_pred ccCHHHHHHHHHHHHHcCCCCHHhhhhh---hcCCCCHHHHHHHHHHHHHHHh
Q 021588 94 PWTEDEHRLFLLGLQKVGKGDWRGISRN---FVKTRTPTQVASHAQKYFLRRF 143 (310)
Q Consensus 94 ~WTeEEH~lFLeGLekyGkGdWk~IA~~---~V~TRT~~QVrSHAQKYf~r~~ 143 (310)
+||+||++.|++|+++||.|+|..|++. ++..||..||+.+|.+++.+..
T Consensus 2 ~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 6999999999999999999999999963 3789999999999999876554
No 23
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.12 E-value=8e-11 Score=96.34 Aligned_cols=51 Identities=18% Similarity=0.372 Sum_probs=45.7
Q ss_pred ccccCCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHH
Q 021588 87 RERKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 139 (310)
Q Consensus 87 r~rKkg~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQKYf 139 (310)
++..+...||+||+++|++++++||. +|..|| .++++||..||+.||++|+
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia-~~~~~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIA-ATFPNRNARQCRDRWKNYL 56 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHH-HTCTTCCHHHHHHHHHHHT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHH-HHcCCCCHHHHHHHHhhhc
Confidence 34455567999999999999999998 999999 6999999999999999886
No 24
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.12 E-value=6e-11 Score=94.43 Aligned_cols=46 Identities=30% Similarity=0.475 Sum_probs=43.4
Q ss_pred CccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHH
Q 021588 93 VPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 139 (310)
Q Consensus 93 ~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQKYf 139 (310)
..||+||+++|++++++||.++|..|| .+|++||..||+.||.+|+
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia-~~~~~Rt~~qcr~Rw~~~L 47 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRIS-QLMITRNPRQCRERWNNYI 47 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHH-HHTTTSCHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHh-hhcCCCCHHHHHHHHHHHH
Confidence 369999999999999999988999999 6999999999999999885
No 25
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=99.10 E-value=1.7e-10 Score=87.44 Aligned_cols=46 Identities=26% Similarity=0.413 Sum_probs=40.9
Q ss_pred ccCCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHH
Q 021588 89 RKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHA 135 (310)
Q Consensus 89 rKkg~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHA 135 (310)
|+.-..||+||+++|++||.+||+ ||..|++++|++||..||..++
T Consensus 5 r~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~fY 50 (70)
T 2crg_A 5 SSGMEEWSASEACLFEEALEKYGK-DFNDIRQDFLPWKSLTSIIEYY 50 (70)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSSSCHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCCHHHHHHHH
Confidence 455667999999999999999999 9999995489999999998765
No 26
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.07 E-value=2.1e-10 Score=93.70 Aligned_cols=56 Identities=18% Similarity=0.343 Sum_probs=47.7
Q ss_pred ccccCCCccCHHHHHHHHHHHHHcCCCCHHhhhhhh---cCCCCHHHHHHHHHHHHHHH
Q 021588 87 RERKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNF---VKTRTPTQVASHAQKYFLRR 142 (310)
Q Consensus 87 r~rKkg~~WTeEEH~lFLeGLekyGkGdWk~IA~~~---V~TRT~~QVrSHAQKYf~r~ 142 (310)
..+++..+||+||++.|++|+++||.|+|..|++.+ +..||..||+.+|.+++.+.
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 356666789999999999999999999999999633 27899999999999887644
No 27
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.07 E-value=1.1e-10 Score=95.82 Aligned_cols=46 Identities=26% Similarity=0.447 Sum_probs=43.7
Q ss_pred CccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHH
Q 021588 93 VPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 139 (310)
Q Consensus 93 ~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQKYf 139 (310)
++||+||+++|++++++||.++|..|| .+|++||..||+.||++|+
T Consensus 3 g~Wt~eED~~L~~~v~~~g~~~W~~Ia-~~~~~Rt~~qcr~Rw~~~l 48 (131)
T 3zqc_A 3 GPFTEAEDDLIREYVKENGPQNWPRIT-SFLPNRSPKQCRERWFNHL 48 (131)
T ss_dssp SSCCHHHHHHHHHHHHHHCSCCGGGGT-TSCTTSCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCcCCHHHHH-HHHCCCCHHHHHHHHhhcc
Confidence 469999999999999999988999999 6999999999999999986
No 28
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.06 E-value=1.5e-10 Score=94.47 Aligned_cols=47 Identities=26% Similarity=0.458 Sum_probs=43.9
Q ss_pred CCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHH
Q 021588 92 GVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 139 (310)
Q Consensus 92 g~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQKYf 139 (310)
..+||+||+++|++++++||.++|..|| .+|++||..||+.||++|+
T Consensus 27 k~~Wt~eED~~L~~~v~~~g~~~W~~Ia-~~l~~Rt~~qcr~Rw~~~l 73 (128)
T 1h8a_C 27 KGPWTKEEDQRVIEHVQKYGPKRWSDIA-KHLKGRIGKQCRERWHNHL 73 (128)
T ss_dssp CSCCCHHHHHHHHHHHHHTCSCCHHHHH-HHSSSCCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHH-HHhcCCcHHHHHHHHHHhc
Confidence 4579999999999999999988999999 7999999999999999876
No 29
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.05 E-value=3e-10 Score=90.44 Aligned_cols=52 Identities=25% Similarity=0.452 Sum_probs=46.3
Q ss_pred CCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHHHHHhc
Q 021588 91 RGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRFN 144 (310)
Q Consensus 91 kg~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQKYf~r~~~ 144 (310)
+..+||+||+++|++++++||. +|..|| .+|++||..||+.||..+..+..+
T Consensus 52 ~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia-~~l~gRt~~~~k~rw~~l~r~~~~ 103 (107)
T 2k9n_A 52 RTDPWSPEEDMLLDQKYAEYGP-KWNKIS-KFLKNRSDNNIRNRWMMIARHRAK 103 (107)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCS-CHHHHH-HHHSSSCHHHHHHHHHHHHHHHHS
T ss_pred cccccCHHHHHHHHHHHHHhCc-CHHHHH-HHCCCCCHHHHHHHHHHHHhhHHH
Confidence 3467999999999999999997 999999 699999999999999987766544
No 30
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.04 E-value=2.3e-10 Score=91.46 Aligned_cols=50 Identities=26% Similarity=0.458 Sum_probs=44.6
Q ss_pred CccCHHHHHHHHHHHHHcCC---CCHHhhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 021588 93 VPWTEDEHRLFLLGLQKVGK---GDWRGISRNFVKTRTPTQVASHAQKYFLRRF 143 (310)
Q Consensus 93 ~~WTeEEH~lFLeGLekyGk---GdWk~IA~~~V~TRT~~QVrSHAQKYf~r~~ 143 (310)
..||.||+++|+++|.+||+ .+|..|| .+|++||..||+.||++++.+..
T Consensus 9 ~~WT~eEd~~L~~al~~~~~~~~~rW~~IA-~~vpGRT~~q~k~ry~~l~~dv~ 61 (93)
T 2cjj_A 9 RPWSAKENKAFERALAVYDKDTPDRWANVA-RAVEGRTPEEVKKHYEILVEDIK 61 (93)
T ss_dssp CSCCHHHHHHHHHHHHHSCTTCTTHHHHHH-HHSTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCCCchHHHHH-HHcCCCCHHHHHHHHHHHHHHHH
Confidence 46999999999999999985 3699999 79999999999999998876544
No 31
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.03 E-value=6.3e-10 Score=93.13 Aligned_cols=57 Identities=21% Similarity=0.360 Sum_probs=48.8
Q ss_pred ccccCCCccCHHHHHHHHHHHHHcCCCCHHhhhhhh---cCCCCHHHHHHHHHHHHHHHh
Q 021588 87 RERKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNF---VKTRTPTQVASHAQKYFLRRF 143 (310)
Q Consensus 87 r~rKkg~~WTeEEH~lFLeGLekyGkGdWk~IA~~~---V~TRT~~QVrSHAQKYf~r~~ 143 (310)
..|++..+||.||++.+++|+++||.|+|..|++.+ +..||..||+.+|.+++....
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~ 85 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS 85 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 345566789999999999999999999999999643 389999999999999886543
No 32
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.98 E-value=6.7e-10 Score=92.86 Aligned_cols=56 Identities=16% Similarity=0.325 Sum_probs=48.4
Q ss_pred cccCCCccCHHHHHHHHHHHHHcCCCCHHhhhhhh---cCCCCHHHHHHHHHHHHHHHh
Q 021588 88 ERKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNF---VKTRTPTQVASHAQKYFLRRF 143 (310)
Q Consensus 88 ~rKkg~~WTeEEH~lFLeGLekyGkGdWk~IA~~~---V~TRT~~QVrSHAQKYf~r~~ 143 (310)
.+++..+||.||++.+++|+++||.|+|..|++.+ +..||..||+.+|.+++.+..
T Consensus 13 ~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~ 71 (121)
T 2juh_A 13 QRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 71 (121)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhc
Confidence 45556689999999999999999999999999643 489999999999999886543
No 33
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.97 E-value=4.7e-10 Score=88.30 Aligned_cols=47 Identities=23% Similarity=0.580 Sum_probs=42.9
Q ss_pred CCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHH
Q 021588 91 RGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 139 (310)
Q Consensus 91 kg~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQKYf 139 (310)
+..+||+||+++|++++++||. +|..|| .+|++||..||+.||..+.
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia-~~l~gRt~~~~k~rw~~~~ 101 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRLGN-RWAEIA-KLLPGRTDNAIKNHWNSTM 101 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSS-CHHHHH-TTCTTCCHHHHHHHHHHHT
T ss_pred cccCCCHHHHHHHHHHHHHhCC-CHHHHH-HHcCCCCHHHHHHHHHHHH
Confidence 3457999999999999999997 999999 6999999999999998664
No 34
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.97 E-value=9.7e-10 Score=89.90 Aligned_cols=51 Identities=24% Similarity=0.427 Sum_probs=45.4
Q ss_pred CCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 021588 91 RGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRF 143 (310)
Q Consensus 91 kg~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQKYf~r~~ 143 (310)
+..+||+||+++|++++++||. +|..|| .++++||..||+.||..+..++.
T Consensus 61 ~~~~WT~eEd~~L~~~v~~~G~-~W~~Ia-~~l~gRt~~~~k~rw~~l~~k~~ 111 (126)
T 3osg_A 61 SHTPWTAEEDALLVQKIQEYGR-QWAIIA-KFFPGRTDIHIKNRWVTISNKLG 111 (126)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS-CHHHHH-TTSTTCCHHHHHHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHHHHHCc-CHHHHH-HHcCCCCHHHHHHHHHHHHHhcC
Confidence 3457999999999999999996 999999 69999999999999987776554
No 35
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.96 E-value=3.7e-10 Score=87.27 Aligned_cols=45 Identities=20% Similarity=0.409 Sum_probs=41.1
Q ss_pred CccCHHHHHHHHHHHHHcCC---CCHHhhhhhhcCCCCHHHHHHHHHHH
Q 021588 93 VPWTEDEHRLFLLGLQKVGK---GDWRGISRNFVKTRTPTQVASHAQKY 138 (310)
Q Consensus 93 ~~WTeEEH~lFLeGLekyGk---GdWk~IA~~~V~TRT~~QVrSHAQKY 138 (310)
..||+||+++|++||..|++ ++|..|| ++|++||..||+.||+..
T Consensus 9 ~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA-~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 9 KEWNEKELQKLHCAFASLPKHKPGFWSEVA-AAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp SCCCHHHHHHHHHHHHHSCSSSSSHHHHHH-HHTTTSCHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHCCCCCccHHHHHH-HHcCCCCHHHHHHHHHHH
Confidence 35999999999999999997 5799999 799999999999998755
No 36
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.90 E-value=1.6e-09 Score=83.20 Aligned_cols=43 Identities=21% Similarity=0.258 Sum_probs=39.2
Q ss_pred CCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHH
Q 021588 91 RGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQ 136 (310)
Q Consensus 91 kg~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQ 136 (310)
+..+||+||++++++++++||. +|..|| +++ .||..||+.+|.
T Consensus 22 ~k~~wT~EED~~L~~l~~~~G~-kW~~IA-~~l-gRt~~q~knRw~ 64 (73)
T 2llk_A 22 HVGKYTPEEIEKLKELRIKHGN-DWATIG-AAL-GRSASSVKDRCR 64 (73)
T ss_dssp CCCSSCHHHHHHHHHHHHHHSS-CHHHHH-HHH-TSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCC-CHHHHH-HHh-CCCHHHHHHHHH
Confidence 4457999999999999999998 699999 588 999999999985
No 37
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.90 E-value=2.1e-09 Score=82.14 Aligned_cols=45 Identities=24% Similarity=0.469 Sum_probs=39.9
Q ss_pred CCccCHHHHHHHHHHHHHcCCC---CHHhhhhhhcCCCCHHHHHHHHHHH
Q 021588 92 GVPWTEDEHRLFLLGLQKVGKG---DWRGISRNFVKTRTPTQVASHAQKY 138 (310)
Q Consensus 92 g~~WTeEEH~lFLeGLekyGkG---dWk~IA~~~V~TRT~~QVrSHAQKY 138 (310)
...||.||+++|.++|.+|+.| +|..|| +++ .||..||+.||+++
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA-~~l-gRt~~eV~~~y~~L 55 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIA-HEL-GRSVTDVTTKAKQL 55 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHH-HHH-TSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHH-HHh-CCCHHHHHHHHHHH
Confidence 3469999999999999999954 699999 688 69999999999876
No 38
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.89 E-value=1.4e-09 Score=89.33 Aligned_cols=51 Identities=20% Similarity=0.429 Sum_probs=45.5
Q ss_pred CCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHHHHHhc
Q 021588 92 GVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRFN 144 (310)
Q Consensus 92 g~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQKYf~r~~~ 144 (310)
..+||+||+++|++++++||. +|..|| .+|++||..||+.||..|+.+..+
T Consensus 54 ~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia-~~l~gRt~~~~k~rw~~~l~~~~~ 104 (131)
T 3zqc_A 54 KHAWTPEEDETIFRNYLKLGS-KWSVIA-KLIPGRTDNAIKNRWNSSISKRIS 104 (131)
T ss_dssp CSCCCHHHHHHHHHHHHHSCS-CHHHHT-TTSTTCCHHHHHHHHHHTTGGGCC
T ss_pred CCCCCHHHHHHHHHHHHHHCc-CHHHHH-HHcCCCCHHHHHHHHHHHHHHHhh
Confidence 357999999999999999996 999999 699999999999999988765443
No 39
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.86 E-value=2e-09 Score=90.55 Aligned_cols=48 Identities=25% Similarity=0.393 Sum_probs=44.4
Q ss_pred CCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHH
Q 021588 91 RGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 139 (310)
Q Consensus 91 kg~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQKYf 139 (310)
+..+||+||+++|++++++||.++|..|| .++++||..||+.||++|+
T Consensus 57 ~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia-~~l~~Rt~~qcr~Rw~~~l 104 (159)
T 1h89_C 57 IKGPWTKEEDQRVIKLVQKYGPKRWSVIA-KHLKGRIGKQCRERWHNHL 104 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCCHHHHH-HTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCChHHHHHHHHHHHHhCcccHHHHH-HHcCCCCHHHHHHHHHHHh
Confidence 34679999999999999999987999999 6999999999999999885
No 40
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.84 E-value=1.8e-09 Score=87.98 Aligned_cols=47 Identities=26% Similarity=0.582 Sum_probs=42.5
Q ss_pred CCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHH
Q 021588 91 RGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 139 (310)
Q Consensus 91 kg~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQKYf 139 (310)
+..+||+||+++|++++++||. +|..|| .+|++||..||+.||..+.
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia-~~l~gRt~~~~k~r~~~~~ 124 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRLGN-RWAEIA-KLLPGRTDNAVKNHWNSTM 124 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS-CHHHHG-GGSTTCCHHHHHHHHHTTT
T ss_pred ccccCCHHHHHHHHHHHHHHCc-CHHHHH-HHCCCCCHHHHHHHHHHHH
Confidence 4567999999999999999997 999999 6999999999999997553
No 41
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.73 E-value=6.9e-09 Score=82.60 Aligned_cols=46 Identities=20% Similarity=0.297 Sum_probs=41.0
Q ss_pred cccCCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHH
Q 021588 88 ERKRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHA 135 (310)
Q Consensus 88 ~rKkg~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHA 135 (310)
.|+....||+||+++|.+++.+||+ +|..|+ +++++||..||..|+
T Consensus 39 ~r~~~~~WT~eE~~~F~~~~~~~gK-~F~~Ia-~~l~~Kt~~~cV~~Y 84 (94)
T 4a69_C 39 DRQVMNMWSEQEKETFREKFMQHPK-NFGLIA-SFLERKTVAECVLYY 84 (94)
T ss_dssp HHHHTCCCCHHHHHHHHHHHHHSTT-CHHHHH-HTCTTCCHHHHHHHH
T ss_pred ccCCCCCCCHHHHHHHHHHHHHcCC-CHHHHH-HHcCCCCHHHHHHHH
Confidence 3455667999999999999999998 999998 799999999998664
No 42
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.72 E-value=1.7e-09 Score=84.17 Aligned_cols=48 Identities=33% Similarity=0.651 Sum_probs=40.1
Q ss_pred ccCCCccCHHHHHHHHHHHHHcCCC---CHHhhhhhhcCCCCHHHHHHHHHH
Q 021588 89 RKRGVPWTEDEHRLFLLGLQKVGKG---DWRGISRNFVKTRTPTQVASHAQK 137 (310)
Q Consensus 89 rKkg~~WTeEEH~lFLeGLekyGkG---dWk~IA~~~V~TRT~~QVrSHAQK 137 (310)
+-.+..||.||.++|..||.+|+++ +|.+|| ++|++||..||+.|||-
T Consensus 17 ~~ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA-~~VpGKT~eEVk~hY~~ 67 (74)
T 4eef_G 17 RGSGRPWKFSENIAFEIALSFTNKDTPDRWKKVA-QYVKGRTPEEVKKHYEL 67 (74)
T ss_dssp -----CCCTTHHHHHHHHTSSSCSSCCSSSTTTG-GGSCSSCHHHHHGGGC-
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHH-HHcCCCCHHHHHHHHHH
Confidence 3345679999999999999999986 899999 79999999999999873
No 43
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.67 E-value=1.1e-08 Score=86.05 Aligned_cols=47 Identities=23% Similarity=0.557 Sum_probs=42.7
Q ss_pred cCCCccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHH
Q 021588 90 KRGVPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 138 (310)
Q Consensus 90 Kkg~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQKY 138 (310)
.+..+||+||+++|++++++||. +|..|| .+|++||..||+.||..+
T Consensus 108 ~~~~~WT~eEd~~L~~~~~~~g~-~W~~Ia-~~l~gRt~~~~knr~~~~ 154 (159)
T 1h89_C 108 VKKTSWTEEEDRIIYQAHKRLGN-RWAEIA-KLLPGRTDNAIKNHWNST 154 (159)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCS-CHHHHH-TTSTTCCHHHHHHHHHTT
T ss_pred ccccCCChHHHHHHHHHHHHHCC-CHHHHH-HHCCCCCHHHHHHHHHHH
Confidence 34568999999999999999997 999999 699999999999999754
No 44
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.56 E-value=1e-07 Score=71.95 Aligned_cols=44 Identities=23% Similarity=0.493 Sum_probs=39.5
Q ss_pred CccCHHHHHHHHHHHHHcCCCCHHhhhh--hhcCCCCHHHHHHHHHH
Q 021588 93 VPWTEDEHRLFLLGLQKVGKGDWRGISR--NFVKTRTPTQVASHAQK 137 (310)
Q Consensus 93 ~~WTeEEH~lFLeGLekyGkGdWk~IA~--~~V~TRT~~QVrSHAQK 137 (310)
.+||+||++.+++|+++||. .|..|+. .|+..||...++..|.+
T Consensus 9 ~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~ 54 (62)
T 1x58_A 9 KDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHR 54 (62)
T ss_dssp SSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHH
Confidence 36999999999999999999 9999995 37889999999988754
No 45
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.33 E-value=2.4e-07 Score=85.54 Aligned_cols=49 Identities=20% Similarity=0.369 Sum_probs=44.3
Q ss_pred CccCHHHHHHHHHHHHHcCCCC-----HHhhhhhhcCCCCHHHHHHHHHHHHHHH
Q 021588 93 VPWTEDEHRLFLLGLQKVGKGD-----WRGISRNFVKTRTPTQVASHAQKYFLRR 142 (310)
Q Consensus 93 ~~WTeEEH~lFLeGLekyGkGd-----Wk~IA~~~V~TRT~~QVrSHAQKYf~r~ 142 (310)
..||+||++.+|+.+++||..+ |..|| .+++.||..|||.||.+|+.+.
T Consensus 9 ~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IA-k~LpGRT~nsIRnRw~~~L~~~ 62 (246)
T 1ign_A 9 ASFTDEEDEFILDVVRKNPTRRTTHTLYDEIS-HYVPNHTGNSIRHRFRVYLSKR 62 (246)
T ss_dssp CCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHT-TTSTTSCHHHHHHHHHHTTGGG
T ss_pred CCCCHHHHHHHHHHHHHhCcCccccccHHHHH-HHcCCCCHHHHHHHHHHHHhhh
Confidence 3699999999999999998753 99999 6999999999999999998553
No 46
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.64 E-value=4.9e-05 Score=71.84 Aligned_cols=48 Identities=25% Similarity=0.430 Sum_probs=42.6
Q ss_pred CCCccCHHHHHHHHHHHHHcCC---CCHHhhhh-----------hhcCCCCHHHHHHHHHHH
Q 021588 91 RGVPWTEDEHRLFLLGLQKVGK---GDWRGISR-----------NFVKTRTPTQVASHAQKY 138 (310)
Q Consensus 91 kg~~WTeEEH~lFLeGLekyGk---GdWk~IA~-----------~~V~TRT~~QVrSHAQKY 138 (310)
++..||+|||+.||-+|.+||. |+|..|.. -|+.+||+.+|..|++--
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tL 272 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTL 272 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHH
Confidence 4557999999999999999999 99999952 489999999999999733
No 47
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=97.50 E-value=9.5e-05 Score=54.36 Aligned_cols=47 Identities=11% Similarity=0.282 Sum_probs=41.9
Q ss_pred CccCHHHHHHHHHHHHHc--------CCCCHHhhhhhhcCCCCHHHHHHHHHHHH
Q 021588 93 VPWTEDEHRLFLLGLQKV--------GKGDWRGISRNFVKTRTPTQVASHAQKYF 139 (310)
Q Consensus 93 ~~WTeEEH~lFLeGLeky--------GkGdWk~IA~~~V~TRT~~QVrSHAQKYf 139 (310)
.+||+||+..+++.|.+| |..-|+.|++..+..+|-.++|.|+.|++
T Consensus 3 ~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l 57 (59)
T 1fex_A 3 IAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL 57 (59)
T ss_dssp CCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence 579999999999999999 55579999954799999999999999875
No 48
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.36 E-value=0.00027 Score=66.88 Aligned_cols=52 Identities=25% Similarity=0.467 Sum_probs=47.0
Q ss_pred CCC-ccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 021588 91 RGV-PWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRF 143 (310)
Q Consensus 91 kg~-~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQKYf~r~~ 143 (310)
.|. .||..+-..|+.|+.+||+.+|..|| ..|+++|..+|+.|++-|+.|..
T Consensus 108 eGF~~W~rrdf~~Fi~a~~kyGr~~~~~IA-~ev~~Kt~eEV~~Y~~vFw~ry~ 160 (304)
T 1ofc_X 108 QGFTAWTKRDFNQFIKANEKYGRDDIDNIA-KDVEGKTPEEVIEYNAVFWERCT 160 (304)
T ss_dssp SSCTTCCHHHHHHHHHHHHHHCTTCHHHHT-TSSTTCCHHHHHHHHHHHHHHGG
T ss_pred hhhcccCHHHHHHHHHHHHHhCHHHHHHHH-HHhcCCCHHHHHHHHHHHHHhHH
Confidence 344 59999999999999999999999999 79999999999999998887764
No 49
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.35 E-value=2.9e-05 Score=77.46 Aligned_cols=41 Identities=17% Similarity=0.344 Sum_probs=0.0
Q ss_pred CccCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHH
Q 021588 93 VPWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHA 135 (310)
Q Consensus 93 ~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHA 135 (310)
..||+||+.+|.+||.+||+ +|..|+ .+|++||..||-.||
T Consensus 190 d~WT~eE~~lFe~al~~yGK-dF~~I~-~~lp~Ksv~e~V~yY 230 (482)
T 2xag_B 190 DEWTVEDKVLFEQAFSFHGK-TFHRIQ-QMLPDKSIASLVKFY 230 (482)
T ss_dssp -------------------------------------------
T ss_pred cccCHHHHHHHHHHHHHcCc-cHHHHH-HHcCCCCHHHHHHHh
Confidence 36999999999999999998 999999 799999999998764
No 50
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.20 E-value=0.00056 Score=59.10 Aligned_cols=51 Identities=22% Similarity=0.551 Sum_probs=41.3
Q ss_pred CCccCHHHHHHHHHHHHHcCCCCHHhhhh-------------hhcCCCCHHHHHHHHHHHHHHHh
Q 021588 92 GVPWTEDEHRLFLLGLQKVGKGDWRGISR-------------NFVKTRTPTQVASHAQKYFLRRF 143 (310)
Q Consensus 92 g~~WTeEEH~lFLeGLekyGkGdWk~IA~-------------~~V~TRT~~QVrSHAQKYf~r~~ 143 (310)
...||+|||..||.||.+||.|+|..|-. .+..+++..++..++. |+++.-
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~-~Ll~~l 197 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRAD-YLIKLL 197 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHH-HHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHH-HHHHHH
Confidence 34599999999999999999999999954 2345677888999984 776654
No 51
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.04 E-value=0.0013 Score=52.82 Aligned_cols=50 Identities=14% Similarity=0.107 Sum_probs=42.0
Q ss_pred CccCHHHHHHHHHHHHHcCCCCHHhhhhhhc-----CCCCHHHHHHHHHHHHHHHhc
Q 021588 93 VPWTEDEHRLFLLGLQKVGKGDWRGISRNFV-----KTRTPTQVASHAQKYFLRRFN 144 (310)
Q Consensus 93 ~~WTeEEH~lFLeGLekyGkGdWk~IA~~~V-----~TRT~~QVrSHAQKYf~r~~~ 144 (310)
..||.||...+++.+++||- +|-.|+. .. +.||..+++.++-..-.++..
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl-RW~vI~D-Ry~~~~~~~Rt~EdLK~RyY~v~~~l~~ 85 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHD-RYDHQQFKKRSVEDLKERYYHICAKLAN 85 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHH-HSCTTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC-Ceeeehh-hhccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 57999999999999999997 9999995 55 579999999998655555443
No 52
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.74 E-value=0.0016 Score=49.64 Aligned_cols=57 Identities=19% Similarity=0.356 Sum_probs=42.7
Q ss_pred ccCCCccCHHHHHHHHHHHHHcCC---------CCHHhhhhhhcC----CCCHHHHHHHHHHHHHHHhccc
Q 021588 89 RKRGVPWTEDEHRLFLLGLQKVGK---------GDWRGISRNFVK----TRTPTQVASHAQKYFLRRFNQN 146 (310)
Q Consensus 89 rKkg~~WTeEEH~lFLeGLekyGk---------GdWk~IA~~~V~----TRT~~QVrSHAQKYf~r~~~~~ 146 (310)
|++...||.+|-.+||++....-. ..|..||. .+. .||+.||+..+.+-...-.+.+
T Consensus 1 kkR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~-~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k 70 (86)
T 2ebi_A 1 KKRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISS-KMREKGFDRSPDMCTDKWRNLLKEFKKAK 70 (86)
T ss_dssp CCCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH-HHHHHHCCCCHHHHHHHHHHHHHHHCSCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 456678999999999999865221 27999995 443 7999999999976655555443
No 53
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.58 E-value=0.0072 Score=49.00 Aligned_cols=53 Identities=25% Similarity=0.392 Sum_probs=45.5
Q ss_pred CccccCCCccCHHHHHHHHHHHHHcCC--CCHHhhhhhhcCCCCHHHHHHHHHHHH
Q 021588 86 SRERKRGVPWTEDEHRLFLLGLQKVGK--GDWRGISRNFVKTRTPTQVASHAQKYF 139 (310)
Q Consensus 86 ~r~rKkg~~WTeEEH~lFLeGLekyGk--GdWk~IA~~~V~TRT~~QVrSHAQKYf 139 (310)
....++-+.||.||++..|...++-|. ..|..|| ..++.|++.||..++|.-.
T Consensus 27 ~s~Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA-~~L~Nks~nqV~~RFq~Lm 81 (95)
T 1ug2_A 27 SSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVIS-QQLGNKTPVEVSHRFRELM 81 (95)
T ss_dssp CCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHH-HHHSSCCHHHHHHHHHHHH
T ss_pred cCCCCEEEEeccccCHHHHHHHHhcCCChhHHHHHH-HHHccCCHHHHHHHHHHHH
Confidence 344556688999999999999999985 4799999 6899999999999998653
No 54
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.55 E-value=0.0031 Score=54.46 Aligned_cols=54 Identities=17% Similarity=0.204 Sum_probs=42.6
Q ss_pred ccCCCccCHHHHHHHHHHHHHcC--CCCHHhhhhh-hcCCCCHHHHHHHHHHHHHHH
Q 021588 89 RKRGVPWTEDEHRLFLLGLQKVG--KGDWRGISRN-FVKTRTPTQVASHAQKYFLRR 142 (310)
Q Consensus 89 rKkg~~WTeEEH~lFLeGLekyG--kGdWk~IA~~-~V~TRT~~QVrSHAQKYf~r~ 142 (310)
|++-..||+.|-+.|+.|+.+|| .++|..|++. -+..||..+|+.+++.+..+.
T Consensus 4 ~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c 60 (211)
T 4b4c_A 4 RENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGC 60 (211)
T ss_dssp ----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 44455799999999999999999 6899999852 256899999999888776554
No 55
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=95.66 E-value=0.0061 Score=56.68 Aligned_cols=27 Identities=37% Similarity=0.816 Sum_probs=25.5
Q ss_pred CccCHHHHHHHHHHHHHcCCCCHHhhh
Q 021588 93 VPWTEDEHRLFLLGLQKVGKGDWRGIS 119 (310)
Q Consensus 93 ~~WTeEEH~lFLeGLekyGkGdWk~IA 119 (310)
..|+.+|+..||.||.+||.|.|..|-
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir 195 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIR 195 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHh
Confidence 469999999999999999999999996
No 56
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=95.45 E-value=0.035 Score=44.72 Aligned_cols=51 Identities=14% Similarity=0.159 Sum_probs=43.7
Q ss_pred ccCHHHHHHHHHHHHHcCCCCHHhhhhhhc----CCCCHHHHHHHHHHHHHHHhcc
Q 021588 94 PWTEDEHRLFLLGLQKVGKGDWRGISRNFV----KTRTPTQVASHAQKYFLRRFNQ 145 (310)
Q Consensus 94 ~WTeEEH~lFLeGLekyGkGdWk~IA~~~V----~TRT~~QVrSHAQKYf~r~~~~ 145 (310)
.||.||-..+++.+++|+- +|--|+..|. +.||..+++.++-....++.+.
T Consensus 32 ~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~ 86 (93)
T 4iej_A 32 AWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp TBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 5999999999999999997 9999996554 4799999999987777666654
No 57
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=95.37 E-value=0.018 Score=55.97 Aligned_cols=49 Identities=20% Similarity=0.299 Sum_probs=44.6
Q ss_pred ccCHHHHHHHHHHHHHcCCCCHHhhhhhhcC-CCCHHHHHHHHHHHHHHHh
Q 021588 94 PWTEDEHRLFLLGLQKVGKGDWRGISRNFVK-TRTPTQVASHAQKYFLRRF 143 (310)
Q Consensus 94 ~WTeEEH~lFLeGLekyGkGdWk~IA~~~V~-TRT~~QVrSHAQKYf~r~~ 143 (310)
.||..+=..|+.|+++||+.+...|| ..|. ++|..+|+.+++-|+.|..
T Consensus 125 ~WnrrDF~~FI~a~~kyGR~d~~~IA-~ev~~~Kt~eEV~~Y~~vFw~Ry~ 174 (374)
T 2y9y_A 125 NWNKLEFRKFITVSGKYGRNSIQAIA-RELAPGKTLEEVRAYAKAFWSNIE 174 (374)
T ss_dssp CSCHHHHHHHHHHHHHHCTTCHHHHH-SSCCCSSSHHHHHHHHHHHHHTCS
T ss_pred ccCHHHHHHHHHHHHHhCHhHHHHHH-HHHccCCCHHHHHHHHHHHHHhhh
Confidence 59999999999999999999999999 6887 9999999999987776654
No 58
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=94.11 E-value=0.0036 Score=48.30 Aligned_cols=46 Identities=26% Similarity=0.438 Sum_probs=39.9
Q ss_pred CCCccCHHHHHHHHHHHHHcCC--CCHHhhhhhhcCCCCHHHHHHHHHHH
Q 021588 91 RGVPWTEDEHRLFLLGLQKVGK--GDWRGISRNFVKTRTPTQVASHAQKY 138 (310)
Q Consensus 91 kg~~WTeEEH~lFLeGLekyGk--GdWk~IA~~~V~TRT~~QVrSHAQKY 138 (310)
.-+.||.|||+..|...++-|. ..|..||+ -+ .||+.||..++|.-
T Consensus 13 ~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~-~L-nks~~QV~~RF~~L 60 (70)
T 2lr8_A 13 IIILWTRNDDRVILLECQKRGPSSKTFAYLAA-KL-DKNPNQVSERFQQL 60 (70)
Confidence 4468999999999999999995 47999994 56 89999999998864
No 59
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=94.43 E-value=0.055 Score=52.63 Aligned_cols=51 Identities=25% Similarity=0.428 Sum_probs=42.8
Q ss_pred CCCccCHHHHHHHHHHHHHcCC---CCHHhhhh-----------hhcCCCCHHHHHHHHHHHHHHH
Q 021588 91 RGVPWTEDEHRLFLLGLQKVGK---GDWRGISR-----------NFVKTRTPTQVASHAQKYFLRR 142 (310)
Q Consensus 91 kg~~WTeEEH~lFLeGLekyGk---GdWk~IA~-----------~~V~TRT~~QVrSHAQKYf~r~ 142 (310)
++..||+||++.+|-+|.+||. |.|..|-. -|+.+||+.++.-|+. .+++.
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~-tLi~~ 291 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGN-TLLQC 291 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHH-HHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHH-HHHHH
Confidence 3446999999999999999999 99999933 3589999999999996 55554
No 60
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=94.32 E-value=0.022 Score=35.38 Aligned_cols=20 Identities=40% Similarity=0.934 Sum_probs=18.0
Q ss_pred CCccCCCCCCCCCCCCCCCC
Q 021588 2 SRSCSQCGNNGHNSRTCAEA 21 (310)
Q Consensus 2 ~R~CS~Cgn~GHNsRTC~~~ 21 (310)
.++|-.||..||-+|.|+..
T Consensus 2 ~~~Cf~CG~~GH~ardC~~~ 21 (26)
T 1dsq_A 2 GPVCFSCGKTGHIKRDCKEE 21 (26)
T ss_dssp CCBCTTTCCBSSCTTTTTCC
T ss_pred CCeeEeCCCCCcccccCCCc
Confidence 46899999999999999965
No 61
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=94.17 E-value=0.066 Score=42.30 Aligned_cols=47 Identities=32% Similarity=0.407 Sum_probs=35.0
Q ss_pred cCCCccCHHHHHHHHHHHHHcCC-CCHH--------------hhhhhhc-----CCCCHHHHHHHHHH
Q 021588 90 KRGVPWTEDEHRLFLLGLQKVGK-GDWR--------------GISRNFV-----KTRTPTQVASHAQK 137 (310)
Q Consensus 90 Kkg~~WTeEEH~lFLeGLekyGk-GdWk--------------~IA~~~V-----~TRT~~QVrSHAQK 137 (310)
+...-|.++=+..|++||+.|-. |.|+ .|| .|| ..||.+||-||-|-
T Consensus 4 ~~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs-~yI~~~tGk~RtrKQVSShiQv 70 (82)
T 2hzd_A 4 DAEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIA-RYIKLRTGKTRTRKQVSSHIQV 70 (82)
T ss_dssp GGSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHH-HHHHHHHSCCCCSHHHHHHHHH
T ss_pred CcCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHH-HHHHHHHcccCCccchhHHHHH
Confidence 34455999999999999999964 2222 233 333 58999999999984
No 62
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=88.89 E-value=0.15 Score=32.14 Aligned_cols=18 Identities=39% Similarity=1.041 Sum_probs=16.4
Q ss_pred CccCCCCCCCCCCCCCCC
Q 021588 3 RSCSQCGNNGHNSRTCAE 20 (310)
Q Consensus 3 R~CS~Cgn~GHNsRTC~~ 20 (310)
.+|-.||..||-+|.|+.
T Consensus 7 ~~C~nCgk~GH~ar~C~~ 24 (29)
T 1nc8_A 7 IRCWNCGKEGHSARQCRA 24 (29)
T ss_dssp CBCTTTSCBSSCGGGCCS
T ss_pred CEEEECCccccCHhHCcc
Confidence 469999999999999984
No 63
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=87.90 E-value=0.24 Score=34.05 Aligned_cols=20 Identities=25% Similarity=0.778 Sum_probs=17.6
Q ss_pred CccCCCCCCCCCCCCCCCCC
Q 021588 3 RSCSQCGNNGHNSRTCAEAG 22 (310)
Q Consensus 3 R~CS~Cgn~GHNsRTC~~~~ 22 (310)
-+|-.||..||-+|+|+...
T Consensus 11 ~~C~~Cgk~GH~ardCP~~~ 30 (40)
T 1a6b_B 11 DQCAYCKEKGHWAKDCPKKP 30 (40)
T ss_dssp SSCSSSCCTTCCTTSCSSSC
T ss_pred CeeeECCCCCcchhhCcCCc
Confidence 47999999999999999654
No 64
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=83.96 E-value=1.6 Score=40.46 Aligned_cols=28 Identities=11% Similarity=0.116 Sum_probs=25.4
Q ss_pred CHHhhhhhhcCCCCHHHHHHHHHHHHHHH
Q 021588 114 DWRGISRNFVKTRTPTQVASHAQKYFLRR 142 (310)
Q Consensus 114 dWk~IA~~~V~TRT~~QVrSHAQKYf~r~ 142 (310)
.|+.|| .+...||...+|.++.|+..+.
T Consensus 173 ~fk~ia-~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 173 FFKHFA-EEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp HHHHHH-HHTTTSCHHHHHHHHHHTHHHH
T ss_pred HHHHHH-HHCCCCChhhHHHHHHHHHhhc
Confidence 699999 6999999999999999987655
No 65
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=83.07 E-value=0.56 Score=33.84 Aligned_cols=20 Identities=30% Similarity=0.870 Sum_probs=12.7
Q ss_pred CccCCCCCCCCCCCCCCCCC
Q 021588 3 RSCSQCGNNGHNSRTCAEAG 22 (310)
Q Consensus 3 R~CS~Cgn~GHNsRTC~~~~ 22 (310)
.+|-.||..||-+|.|+...
T Consensus 31 ~~C~~Cg~~GH~ar~C~~~~ 50 (61)
T 2ihx_A 31 ERCQLCNGMGHNAKQCRKRD 50 (61)
T ss_dssp SBCTTTCCBSSCGGGCCCCC
T ss_pred CeeCCCCCCCCCcCCCcCCC
Confidence 34666777777777776544
No 66
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=82.82 E-value=0.44 Score=34.85 Aligned_cols=20 Identities=25% Similarity=0.778 Sum_probs=17.6
Q ss_pred CccCCCCCCCCCCCCCCCCC
Q 021588 3 RSCSQCGNNGHNSRTCAEAG 22 (310)
Q Consensus 3 R~CS~Cgn~GHNsRTC~~~~ 22 (310)
-+|-.||..||-+|.|+...
T Consensus 24 ~~C~~Cge~GH~ardCp~~~ 43 (56)
T 1u6p_A 24 DQCAYCKEKGHWAKDCPKKP 43 (56)
T ss_dssp TBCSSSCCBSSCGGGCTTCC
T ss_pred CcceeCCCCCcccccCcCCc
Confidence 36999999999999999654
No 67
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=81.96 E-value=0.78 Score=30.25 Aligned_cols=16 Identities=44% Similarity=1.209 Sum_probs=9.3
Q ss_pred ccCCCCCCCCCCCCCC
Q 021588 4 SCSQCGNNGHNSRTCA 19 (310)
Q Consensus 4 ~CS~Cgn~GHNsRTC~ 19 (310)
+|-.||..||-+|.|+
T Consensus 2 ~C~~Cg~~GH~a~~C~ 17 (39)
T 2a51_A 2 TCFNCGKPGHTARMCR 17 (39)
T ss_dssp BCTTTCCBSSCTTTCC
T ss_pred eeeccCCCCcccccCC
Confidence 3555666666666665
No 68
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=81.32 E-value=0.62 Score=30.41 Aligned_cols=17 Identities=41% Similarity=1.024 Sum_probs=11.3
Q ss_pred ccCCCCCCCCCCCCCCC
Q 021588 4 SCSQCGNNGHNSRTCAE 20 (310)
Q Consensus 4 ~CS~Cgn~GHNsRTC~~ 20 (310)
+|-.||..||-+|.|+.
T Consensus 2 ~C~~Cg~~GH~~~~C~~ 18 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRA 18 (37)
T ss_dssp CBSSSCCSSCCTTTSSC
T ss_pred cccccCCCCcchhhCcC
Confidence 46667777777777653
No 69
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=79.89 E-value=0.95 Score=29.52 Aligned_cols=17 Identities=35% Similarity=0.880 Sum_probs=15.0
Q ss_pred ccCCCCCCCCCCCCCCC
Q 021588 4 SCSQCGNNGHNSRTCAE 20 (310)
Q Consensus 4 ~CS~Cgn~GHNsRTC~~ 20 (310)
.|-.||..||-+|.|++
T Consensus 21 ~C~~Cg~~GH~a~~C~~ 37 (37)
T 2bl6_A 21 VCFKCKQPGHFSKQCRS 37 (37)
T ss_dssp TCSSCCCTTGGGGTTCC
T ss_pred eEccCCCcCCccCcCcC
Confidence 57789999999999983
No 70
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=78.44 E-value=0.91 Score=31.77 Aligned_cols=17 Identities=35% Similarity=1.064 Sum_probs=10.5
Q ss_pred ccCCCCCCCCCCCCCCC
Q 021588 4 SCSQCGNNGHNSRTCAE 20 (310)
Q Consensus 4 ~CS~Cgn~GHNsRTC~~ 20 (310)
+|-.||..||-+|.|+.
T Consensus 14 ~C~~Cg~~GH~a~~C~~ 30 (55)
T 1a1t_A 14 KCFNCGKEGHIAKNCRA 30 (55)
T ss_dssp BCTTTCCBSSCGGGCSS
T ss_pred ceeeeCCCCcChhhcCC
Confidence 56666666666666653
No 71
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=77.81 E-value=1 Score=32.46 Aligned_cols=21 Identities=29% Similarity=0.748 Sum_probs=18.5
Q ss_pred CCCccCCCCCCCCCCCCCCCC
Q 021588 1 MSRSCSQCGNNGHNSRTCAEA 21 (310)
Q Consensus 1 m~R~CS~Cgn~GHNsRTC~~~ 21 (310)
+..+|-.||..||-+|.|+..
T Consensus 3 ~~~~C~~Cg~~GH~a~~C~~~ 23 (61)
T 2ihx_A 3 ARGLCYTCGSPGHYQAQCPKK 23 (61)
T ss_dssp CTTBCSSSCCBTCCGGGCTTT
T ss_pred CCCcccccCCCCeehhhCcCC
Confidence 457899999999999999964
No 72
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=77.42 E-value=4.8 Score=37.32 Aligned_cols=43 Identities=14% Similarity=0.115 Sum_probs=34.6
Q ss_pred ccCHHHHHHHHHHHHHcC--CCCHHhhhh-hhcCCCCHHHHHHHHH
Q 021588 94 PWTEDEHRLFLLGLQKVG--KGDWRGISR-NFVKTRTPTQVASHAQ 136 (310)
Q Consensus 94 ~WTeEEH~lFLeGLekyG--kGdWk~IA~-~~V~TRT~~QVrSHAQ 136 (310)
.||+.|-+.|+.++.+|| .++|..|++ .-+..|....++.-++
T Consensus 5 ~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~ 50 (270)
T 2xb0_X 5 SIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYD 50 (270)
T ss_dssp CCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHH
Confidence 599999999999999999 478999964 3355688877766554
No 73
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=76.64 E-value=1.3 Score=30.67 Aligned_cols=18 Identities=39% Similarity=1.041 Sum_probs=11.6
Q ss_pred CccCCCCCCCCCCCCCCC
Q 021588 3 RSCSQCGNNGHNSRTCAE 20 (310)
Q Consensus 3 R~CS~Cgn~GHNsRTC~~ 20 (310)
.+|-.||..||-+|.|+.
T Consensus 7 ~~C~~Cg~~GH~a~~C~~ 24 (49)
T 2ec7_A 7 IRCWNCGKEGHSARQCRA 24 (49)
T ss_dssp CBCTTTCCBTCCTTTCCC
T ss_pred CeeeecCCCCcChhhCcC
Confidence 356666666666666654
No 74
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=76.41 E-value=1.2 Score=30.78 Aligned_cols=19 Identities=37% Similarity=0.952 Sum_probs=16.6
Q ss_pred CccCCCCCCCCCCCCCCCC
Q 021588 3 RSCSQCGNNGHNSRTCAEA 21 (310)
Q Consensus 3 R~CS~Cgn~GHNsRTC~~~ 21 (310)
..|-.||..||-+|.|+..
T Consensus 28 ~~C~~Cg~~GH~~~~C~~~ 46 (49)
T 2ec7_A 28 QGCWKCGKTGHVMAKCPER 46 (49)
T ss_dssp CSCSSSCCSSCCGGGCCSS
T ss_pred CeeCcCCCcCCccCCCcCC
Confidence 3588999999999999964
No 75
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=75.73 E-value=1.2 Score=29.33 Aligned_cols=15 Identities=33% Similarity=0.946 Sum_probs=13.8
Q ss_pred cCCCCCCCCCCCCCC
Q 021588 5 CSQCGNNGHNSRTCA 19 (310)
Q Consensus 5 CS~Cgn~GHNsRTC~ 19 (310)
|-.||..||-+|.|+
T Consensus 24 C~~Cg~~GH~~~~C~ 38 (39)
T 2a51_A 24 CWNCGSKEHRFAQCP 38 (39)
T ss_dssp CTTTCCSSSCTTTSC
T ss_pred cccCCCCCCccCcCc
Confidence 668999999999998
No 76
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=72.72 E-value=1.4 Score=30.75 Aligned_cols=19 Identities=37% Similarity=1.092 Sum_probs=16.8
Q ss_pred CccCCCCCCCCCCCCCCCC
Q 021588 3 RSCSQCGNNGHNSRTCAEA 21 (310)
Q Consensus 3 R~CS~Cgn~GHNsRTC~~~ 21 (310)
..|-.||..||-+|.|+..
T Consensus 34 ~~C~~Cg~~GH~~~~C~~~ 52 (55)
T 1a1t_A 34 KGCWKCGKEGHQMKDCTER 52 (55)
T ss_dssp CBCTTTCCBSSCGGGCSSS
T ss_pred CEeCCCCCcCCccCCCcCc
Confidence 4699999999999999954
No 77
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=70.72 E-value=0.87 Score=32.41 Aligned_cols=20 Identities=40% Similarity=0.979 Sum_probs=0.0
Q ss_pred CCccCCCCCCCCCCCCCCCC
Q 021588 2 SRSCSQCGNNGHNSRTCAEA 21 (310)
Q Consensus 2 ~R~CS~Cgn~GHNsRTC~~~ 21 (310)
+++|-.||..||-+|.|+..
T Consensus 1 G~~Cf~Cg~~GH~a~~C~~~ 20 (60)
T 1cl4_A 1 GGSCFKCGKKGHFAKNCHEH 20 (60)
T ss_dssp --------------------
T ss_pred CCccccCCCCCcCHhhCcCC
Confidence 46788999999999999854
No 78
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=70.29 E-value=2.4 Score=30.04 Aligned_cols=21 Identities=19% Similarity=0.544 Sum_probs=18.2
Q ss_pred CCccCCCCCCCCCCCCCCCCC
Q 021588 2 SRSCSQCGNNGHNSRTCAEAG 22 (310)
Q Consensus 2 ~R~CS~Cgn~GHNsRTC~~~~ 22 (310)
...|-.||..||-+|.|+...
T Consensus 30 ~~~C~~Cg~~GH~ar~C~~~~ 50 (60)
T 1cl4_A 30 PGLCPRCKRGKHWANECKSKT 50 (60)
T ss_dssp CCSCSSCSSCSSCSTTCCCTT
T ss_pred CcceeECCCCCCccCcCCCcc
Confidence 367999999999999999653
No 79
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=65.68 E-value=3.2 Score=32.10 Aligned_cols=20 Identities=35% Similarity=0.803 Sum_probs=17.9
Q ss_pred CccCCCCCCCCCCCCCCCCC
Q 021588 3 RSCSQCGNNGHNSRTCAEAG 22 (310)
Q Consensus 3 R~CS~Cgn~GHNsRTC~~~~ 22 (310)
..|-.||..||=+|.|+...
T Consensus 47 ~~CYnCG~~GH~~rdC~~~r 66 (83)
T 3nyb_B 47 IYCYNCGGKGHFGDDCKEKR 66 (83)
T ss_dssp CBCSSSSCBSSCGGGCSSCC
T ss_pred CeecccCCCCcCcccCCccc
Confidence 57999999999999999764
No 80
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.87 E-value=3.5 Score=29.86 Aligned_cols=19 Identities=21% Similarity=0.576 Sum_probs=14.8
Q ss_pred CccCCCCCCCCCCCCCCCC
Q 021588 3 RSCSQCGNNGHNSRTCAEA 21 (310)
Q Consensus 3 R~CS~Cgn~GHNsRTC~~~ 21 (310)
++|-.||..||-+|.|+..
T Consensus 30 ~~C~~Cg~~GH~ar~Cp~~ 48 (63)
T 2cqf_A 30 KKCHFCQSISHMVASCPLK 48 (63)
T ss_dssp SCCTTTCCSSSCTTTCTGG
T ss_pred CccCCcCCcCCccCcCCCc
Confidence 4677888888888888854
No 81
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.76 E-value=3.6 Score=29.80 Aligned_cols=18 Identities=28% Similarity=0.826 Sum_probs=16.5
Q ss_pred CccCCCCCCCCCCCCCCC
Q 021588 3 RSCSQCGNNGHNSRTCAE 20 (310)
Q Consensus 3 R~CS~Cgn~GHNsRTC~~ 20 (310)
.+|-.||..||-+|.|+.
T Consensus 8 ~~C~~Cg~~GH~a~~C~~ 25 (63)
T 2cqf_A 8 DRCYNCGGLDHHAKECKL 25 (63)
T ss_dssp CCCSSSCCSSSCTTTCCS
T ss_pred CcccccCCCCcChhhCCC
Confidence 579999999999999994
No 82
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=62.25 E-value=3.5 Score=31.11 Aligned_cols=17 Identities=24% Similarity=0.599 Sum_probs=9.0
Q ss_pred ccCCCCCCCCCCCCCCC
Q 021588 4 SCSQCGNNGHNSRTCAE 20 (310)
Q Consensus 4 ~CS~Cgn~GHNsRTC~~ 20 (310)
.|-.||..||-+|.|+.
T Consensus 48 ~C~~Cg~~GH~ar~Cp~ 64 (74)
T 2li8_A 48 KCHFCQSISHMVASCPL 64 (74)
T ss_dssp CCTTTCCTTSCGGGCTT
T ss_pred ccCCcCCcCCccCcCcC
Confidence 44455555555555553
No 83
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=60.19 E-value=4.3 Score=30.65 Aligned_cols=18 Identities=28% Similarity=0.826 Sum_probs=16.5
Q ss_pred CccCCCCCCCCCCCCCCC
Q 021588 3 RSCSQCGNNGHNSRTCAE 20 (310)
Q Consensus 3 R~CS~Cgn~GHNsRTC~~ 20 (310)
.+|-.||..||-+|.|+.
T Consensus 25 ~~C~~Cg~~GH~a~~C~~ 42 (74)
T 2li8_A 25 DRCYNCGGLDHHAKECKL 42 (74)
T ss_dssp SCCTTTCCSSSCTTTCSS
T ss_pred CcccccCCcCcCcccCCC
Confidence 479999999999999995
No 84
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=57.94 E-value=4.1 Score=34.18 Aligned_cols=18 Identities=28% Similarity=0.826 Sum_probs=16.4
Q ss_pred CccCCCCCCCCCCCCCCC
Q 021588 3 RSCSQCGNNGHNSRTCAE 20 (310)
Q Consensus 3 R~CS~Cgn~GHNsRTC~~ 20 (310)
.+|-.||..||-+|.|+.
T Consensus 98 ~~C~~Cg~~GH~a~~C~~ 115 (148)
T 3ts2_A 98 DRCYNCGGLDHHAKECKL 115 (148)
T ss_dssp CCCTTTCCSSCCGGGCCS
T ss_pred CcccEeCCccchhhhCCC
Confidence 369999999999999995
No 85
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=56.14 E-value=5.7 Score=31.63 Aligned_cols=20 Identities=20% Similarity=0.584 Sum_probs=16.4
Q ss_pred CccCCCCCCCCCCCCCCCCC
Q 021588 3 RSCSQCGNNGHNSRTCAEAG 22 (310)
Q Consensus 3 R~CS~Cgn~GHNsRTC~~~~ 22 (310)
..|-.||..||.+|.|+...
T Consensus 65 ~~C~~Cg~~GH~~~~Cp~~~ 84 (124)
T 2lli_A 65 VQCTLCKSKKHSKERCPSIW 84 (124)
T ss_dssp CSSSSSCSSCCCTTTCCCST
T ss_pred ccCCCCCcCCcchhhCCCcc
Confidence 46888999999999998653
No 86
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=54.69 E-value=4.2 Score=31.44 Aligned_cols=19 Identities=21% Similarity=0.684 Sum_probs=16.5
Q ss_pred CccCCCCCCCCCCCCCCCC
Q 021588 3 RSCSQCGNNGHNSRTCAEA 21 (310)
Q Consensus 3 R~CS~Cgn~GHNsRTC~~~ 21 (310)
..|-.||..||-+|.||+.
T Consensus 6 ~~C~~Cg~~GH~~~~Cp~~ 24 (83)
T 3nyb_B 6 VQCTLCKSKKHSKERCPSI 24 (83)
T ss_dssp -CCSSSCCSSSCGGGCGGG
T ss_pred CCCCCCCCCCCccccCCCc
Confidence 4799999999999999963
No 87
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=54.35 E-value=13 Score=29.67 Aligned_cols=30 Identities=13% Similarity=0.151 Sum_probs=23.5
Q ss_pred CCHHhhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 021588 113 GDWRGISRNFVKTRTPTQVASHAQKYFLRRF 143 (310)
Q Consensus 113 GdWk~IA~~~V~TRT~~QVrSHAQKYf~r~~ 143 (310)
+.|+.|++ -++--...+++.|+.||+.-..
T Consensus 71 ~~W~~Va~-~lg~~~~~~Lr~~Y~k~L~~yE 100 (116)
T 2li6_A 71 QQWSMVAQ-RLQISDYQQLESIYFRILLPYE 100 (116)
T ss_dssp TCHHHHHH-HHTSCCTTHHHHHHHHHHSHHH
T ss_pred CcHHHHHH-HhCCChHHHHHHHHHHHHHHHH
Confidence 48999995 5655558999999999975544
No 88
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.54 E-value=6.7 Score=28.42 Aligned_cols=20 Identities=30% Similarity=0.871 Sum_probs=17.5
Q ss_pred CCccCCCCCCCCCCCCCCCC
Q 021588 2 SRSCSQCGNNGHNSRTCAEA 21 (310)
Q Consensus 2 ~R~CS~Cgn~GHNsRTC~~~ 21 (310)
...|=-||.-||-.+-|++.
T Consensus 7 ~~~C~kCGk~GH~~k~Cp~~ 26 (55)
T 2ysa_A 7 GYTCFRCGKPGHYIKNCPTN 26 (55)
T ss_dssp SCCCTTTCCTTSCGGGCSGG
T ss_pred CCccccCCCcCcccccCCCC
Confidence 35799999999999999954
No 89
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=46.94 E-value=9.7 Score=30.27 Aligned_cols=18 Identities=28% Similarity=0.922 Sum_probs=12.3
Q ss_pred CccCCCCCCCCCCCCCCC
Q 021588 3 RSCSQCGNNGHNSRTCAE 20 (310)
Q Consensus 3 R~CS~Cgn~GHNsRTC~~ 20 (310)
+.|-.|+..||.+|.|+.
T Consensus 5 ~~C~~C~~~GH~~~~Cp~ 22 (124)
T 2lli_A 5 PKCNNCSQRGHLKKDCPH 22 (124)
T ss_dssp SCCSSCSSSSCCTTTTTS
T ss_pred CcccCCCCCCcCcccCcC
Confidence 457777777777777764
No 90
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=46.43 E-value=20 Score=28.64 Aligned_cols=31 Identities=10% Similarity=0.155 Sum_probs=22.6
Q ss_pred CCHHhhhhhhcCCCC----HHHHHHHHHHHHHHHhc
Q 021588 113 GDWRGISRNFVKTRT----PTQVASHAQKYFLRRFN 144 (310)
Q Consensus 113 GdWk~IA~~~V~TRT----~~QVrSHAQKYf~r~~~ 144 (310)
+.|+.|++ -++--. ..+++.|+.||+.-...
T Consensus 62 ~~W~~Va~-~lg~~~~~~a~~~Lk~~Y~k~L~~yE~ 96 (117)
T 2jrz_A 62 RRWARVAQ-RLNYPPGKNIGSLLRSHYERIVYPYEM 96 (117)
T ss_dssp TTHHHHHH-HTTCCTTCTHHHHHHHHHHHTTHHHHH
T ss_pred CcHHHHHH-HhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 58999995 444322 67899999999766554
No 91
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=45.97 E-value=25 Score=27.33 Aligned_cols=31 Identities=6% Similarity=0.160 Sum_probs=22.7
Q ss_pred CCHHhhhhhhcCC-CC---HHHHHHHHHHHHHHHhc
Q 021588 113 GDWRGISRNFVKT-RT---PTQVASHAQKYFLRRFN 144 (310)
Q Consensus 113 GdWk~IA~~~V~T-RT---~~QVrSHAQKYf~r~~~ 144 (310)
+.|+.|++ .++- .+ ..+++.|+.||+.-...
T Consensus 66 ~~W~~va~-~lg~~~~~~~~~~lk~~Y~k~L~~yE~ 100 (107)
T 2lm1_A 66 RKWAKVAN-RMQYPSSKSVGATLKAHYERILHPFEV 100 (107)
T ss_dssp TTHHHHHH-HTTCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHH-HhCCCCCCcHHHHHHHHHHHHhHHHHH
Confidence 48999996 4443 32 57999999999876554
No 92
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=42.93 E-value=30 Score=27.92 Aligned_cols=32 Identities=9% Similarity=0.103 Sum_probs=23.3
Q ss_pred CCHHhhhhhhcCCC-C---HHHHHHHHHHHHHHHhcc
Q 021588 113 GDWRGISRNFVKTR-T---PTQVASHAQKYFLRRFNQ 145 (310)
Q Consensus 113 GdWk~IA~~~V~TR-T---~~QVrSHAQKYf~r~~~~ 145 (310)
+.|+.|++ .++-- + ..+++.|++||+.-....
T Consensus 64 k~W~~V~~-~lg~~~~~~~~~~Lr~~Y~k~L~~yE~~ 99 (122)
T 2eqy_A 64 RKWTKIAT-KMGFAPGKAVGSHIRGHYERILNPYNLF 99 (122)
T ss_dssp TTHHHHHH-HTTCCSSSHHHHHHHHHHHHTHHHHHHH
T ss_pred CcHHHHHH-HhCCCCCCcHHHHHHHHHHHHhHHHHHH
Confidence 58999995 44432 2 469999999998776653
No 93
>2lc3_A E3 ubiquitin-protein ligase hectd1; helical bundle, structural genomics, northeast structural GE consortium, NESG, structural genomics consortium; NMR {Homo sapiens}
Probab=42.79 E-value=51 Score=26.27 Aligned_cols=55 Identities=16% Similarity=0.249 Sum_probs=38.0
Q ss_pred ccccCCCccCHHH-----------HHHHHHHHHHcCC----CCHHh---hhhhhcCCCCHHHHHHHHHHHHHHH
Q 021588 87 RERKRGVPWTEDE-----------HRLFLLGLQKVGK----GDWRG---ISRNFVKTRTPTQVASHAQKYFLRR 142 (310)
Q Consensus 87 r~rKkg~~WTeEE-----------H~lFLeGLekyGk----GdWk~---IA~~~V~TRT~~QVrSHAQKYf~r~ 142 (310)
.+.-+++.||.|+ ...++..|+.+|. ..|+. |. +..+|+...|...-+.++|---
T Consensus 8 ~~~~~~~~Ws~Eq~~~~L~Sd~lpKkdiIkfLq~na~~~FL~e~KLlGniK-NVaKtanK~qLiaAY~~lfE~~ 80 (88)
T 2lc3_A 8 KENGKMGCWSIEHVEQYLGTDELPKNDLITYLQKNADAAFLRHWKLTGTNK-SIRKNRNCSQLIAAYKDFCEHG 80 (88)
T ss_dssp HCSCCCCCCCHHHHHHHBTSSSBCHHHHHHHHHHHSCHHHHHHTTCSSCHH-HHHHHSCHHHHHHHHHHHHHHT
T ss_pred cccCccCcchHHHHhcccccccccHHHHHHHHHHcchHHHHHHHHHhccHH-HHHhcCcHHHHHHHHHHHHhcc
Confidence 4555678899999 4556777888874 12322 33 4556999999998888887643
No 94
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=41.57 E-value=25 Score=28.41 Aligned_cols=32 Identities=13% Similarity=0.294 Sum_probs=23.1
Q ss_pred CCHHhhhhhhcCCCC----HHHHHHHHHHHHHHHhcc
Q 021588 113 GDWRGISRNFVKTRT----PTQVASHAQKYFLRRFNQ 145 (310)
Q Consensus 113 GdWk~IA~~~V~TRT----~~QVrSHAQKYf~r~~~~ 145 (310)
..|+.|++ .++--+ ..+++.|+.||+.-....
T Consensus 73 ~~W~~Va~-~lg~~~~~s~~~~Lk~~Y~k~L~~yE~~ 108 (125)
T 2cxy_A 73 KKWRELAT-NLNVGTSSSAASSLKKQYIQYLFAFECK 108 (125)
T ss_dssp TCHHHHHH-HTTSCSSHHHHHHHHHHHHHHTHHHHHH
T ss_pred CcHHHHHH-HhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 48999995 444333 568999999997766543
No 95
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=41.31 E-value=25 Score=28.41 Aligned_cols=34 Identities=12% Similarity=0.192 Sum_probs=24.0
Q ss_pred CCHHhhhhhhcCCC----CHHHHHHHHHHHHHHHhccc
Q 021588 113 GDWRGISRNFVKTR----TPTQVASHAQKYFLRRFNQN 146 (310)
Q Consensus 113 GdWk~IA~~~V~TR----T~~QVrSHAQKYf~r~~~~~ 146 (310)
..|+.|++.+--.. ...+++.|+.+|+.-.....
T Consensus 74 k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~yE~~~ 111 (128)
T 1c20_A 74 KLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEK 111 (128)
T ss_dssp TTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHHHHHH
T ss_pred CcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 48999996433222 26899999999987766543
No 96
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=41.06 E-value=20 Score=29.26 Aligned_cols=31 Identities=13% Similarity=0.149 Sum_probs=24.7
Q ss_pred CCHHhhhhhhcCCCCHHHHHHHHHHHHHHHhc
Q 021588 113 GDWRGISRNFVKTRTPTQVASHAQKYFLRRFN 144 (310)
Q Consensus 113 GdWk~IA~~~V~TRT~~QVrSHAQKYf~r~~~ 144 (310)
..|+.|++ -++--...+++.|+.||+.-...
T Consensus 70 k~W~~Va~-~lg~~~~~~Lr~~Y~k~L~~yE~ 100 (123)
T 1kkx_A 70 QQWSMVAQ-RLQISDYQQLESIYFRILLPYER 100 (123)
T ss_dssp HHHHHHHH-HHTCCCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHH-HHCCChHHHHHHHHHHHHHHHHH
Confidence 47999995 55555599999999999877664
No 97
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=40.81 E-value=25 Score=28.81 Aligned_cols=33 Identities=9% Similarity=0.194 Sum_probs=23.8
Q ss_pred CCHHhhhhhhcCCC----CHHHHHHHHHHHHHHHhcc
Q 021588 113 GDWRGISRNFVKTR----TPTQVASHAQKYFLRRFNQ 145 (310)
Q Consensus 113 GdWk~IA~~~V~TR----T~~QVrSHAQKYf~r~~~~ 145 (310)
..|+.|++.+--.. ...+++.|+.||+......
T Consensus 64 k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE~~ 100 (121)
T 2rq5_A 64 KKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYDSL 100 (121)
T ss_dssp TCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHHHC
T ss_pred CcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHHCc
Confidence 58999996432222 3579999999998877654
No 98
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=38.01 E-value=18 Score=28.29 Aligned_cols=29 Identities=21% Similarity=0.352 Sum_probs=20.4
Q ss_pred CCHHhhhhhhcC----CCCHHHHHHHHHHHHHH
Q 021588 113 GDWRGISRNFVK----TRTPTQVASHAQKYFLR 141 (310)
Q Consensus 113 GdWk~IA~~~V~----TRT~~QVrSHAQKYf~r 141 (310)
+.|+.|++.+-- |-...+++.|+++|+.-
T Consensus 55 ~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 55 RQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp TTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred CcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 589999964332 22357899999999653
No 99
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=33.54 E-value=34 Score=28.41 Aligned_cols=33 Identities=15% Similarity=0.253 Sum_probs=23.2
Q ss_pred CCHHhhhhhhcCCC----CHHHHHHHHHHHHHHHhcc
Q 021588 113 GDWRGISRNFVKTR----TPTQVASHAQKYFLRRFNQ 145 (310)
Q Consensus 113 GdWk~IA~~~V~TR----T~~QVrSHAQKYf~r~~~~ 145 (310)
..|+.|++.+--.. ...+++.|+.||+.-....
T Consensus 86 ~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~ 122 (145)
T 2kk0_A 86 KLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECE 122 (145)
T ss_dssp TCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHH
T ss_pred CcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHH
Confidence 58999996433222 3679999999997665543
No 100
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=26.43 E-value=12 Score=23.99 Aligned_cols=17 Identities=53% Similarity=0.911 Sum_probs=11.2
Q ss_pred cCCccccCCCccCHHHH
Q 021588 84 GRSRERKRGVPWTEDEH 100 (310)
Q Consensus 84 ~~~r~rKkg~~WTeEEH 100 (310)
.+++.||+...|.++|+
T Consensus 3 rrrrprkrplewdedee 19 (28)
T 3ukw_C 3 RRRRPRKRPLEWDEDEE 19 (28)
T ss_dssp ----CCCCCCCCCGGGS
T ss_pred cccccccCCcccccccC
Confidence 45678888999998885
No 101
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=23.77 E-value=59 Score=24.67 Aligned_cols=30 Identities=13% Similarity=0.197 Sum_probs=21.1
Q ss_pred CCHHhhhhhhcCC-C---CHHHHHHHHHHHHHHHh
Q 021588 113 GDWRGISRNFVKT-R---TPTQVASHAQKYFLRRF 143 (310)
Q Consensus 113 GdWk~IA~~~V~T-R---T~~QVrSHAQKYf~r~~ 143 (310)
..|+.|++ .++- . ...+++.|++||+.-..
T Consensus 58 ~~W~~v~~-~lg~~~~~~~~~~Lk~~Y~k~L~~yE 91 (96)
T 2jxj_A 58 KKWSKVGS-RLGYLPGKGTGSLLKSHYERILYPYE 91 (96)
T ss_dssp TTHHHHHH-HHTCCSCSCHHHHHHHHHTTTTHHHH
T ss_pred CcHHHHHH-HhCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 58999996 4432 2 25689999999876543
No 102
>3o2i_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Leptospirillum rubarum}
Probab=21.73 E-value=55 Score=27.10 Aligned_cols=26 Identities=38% Similarity=0.690 Sum_probs=21.2
Q ss_pred CCccCHHHH-HHHHHHHHHcCCCCHHh
Q 021588 92 GVPWTEDEH-RLFLLGLQKVGKGDWRG 117 (310)
Q Consensus 92 g~~WTeEEH-~lFLeGLekyGkGdWk~ 117 (310)
...||+||- +++|+|++.--..+|+.
T Consensus 48 ~~~~TE~EF~~LLLEA~~~sSsS~W~~ 74 (125)
T 3o2i_A 48 SEYWTEDEFYNLLLEAFQRSSASDWHL 74 (125)
T ss_dssp SSCCCHHHHHHHHHHHHTTSCSCCHHH
T ss_pred cccccHHHHHHHHHHHHHhccCCcHHH
Confidence 347999995 67889999888889985
No 103
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=20.42 E-value=2.1e+02 Score=19.63 Aligned_cols=45 Identities=16% Similarity=0.198 Sum_probs=32.0
Q ss_pred cCHHHHHHHHHHHHHcCCCCHHhhhhhhcCCCCHHHHHHHHHHHHHHHhc
Q 021588 95 WTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRFN 144 (310)
Q Consensus 95 WTeEEH~lFLeGLekyGkGdWk~IA~~~V~TRT~~QVrSHAQKYf~r~~~ 144 (310)
+|+.|-+.|.. + ..|. ..+.||+ .++ -+...|+.|...-+.++..
T Consensus 17 L~~~e~~vl~l-~-~~g~-s~~eIA~-~l~-is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 17 LSERERQVLSA-V-VAGL-PNKSIAY-DLD-ISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp HCHHHHHHHHH-H-TTTC-CHHHHHH-HTT-SCHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHH-H-HcCC-CHHHHHH-HHC-cCHHHHHHHHHHHHHHHcC
Confidence 77777777765 4 5566 8999994 554 4778888887777666654
Done!