Query 021589
Match_columns 310
No_of_seqs 182 out of 838
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 04:10:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021589.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021589hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1565 Uncharacterized conser 100.0 6.8E-54 1.5E-58 412.8 17.0 187 85-290 3-190 (370)
2 KOG2901 Uncharacterized conser 100.0 1.1E-47 2.4E-52 365.4 11.0 211 73-293 24-234 (415)
3 PF02636 Methyltransf_28: Puta 100.0 3.9E-33 8.4E-38 257.6 15.4 136 144-292 1-140 (252)
4 COG3963 Phospholipid N-methylt 97.5 0.00021 4.6E-09 64.0 6.1 91 157-267 45-135 (194)
5 PHA03412 putative methyltransf 97.4 0.00062 1.3E-08 63.9 8.3 69 126-211 28-96 (241)
6 TIGR00740 methyltransferase, p 97.3 0.0018 3.9E-08 59.1 9.9 48 161-213 54-101 (239)
7 PF05175 MTS: Methyltransferas 97.2 0.0028 6E-08 55.3 9.7 76 162-259 33-108 (170)
8 PRK15451 tRNA cmo(5)U34 methyl 97.1 0.0042 9.1E-08 57.4 10.7 48 161-213 57-104 (247)
9 PRK14896 ksgA 16S ribosomal RN 96.9 0.0064 1.4E-07 56.7 9.8 43 161-212 30-72 (258)
10 PLN02244 tocopherol O-methyltr 96.9 0.077 1.7E-06 51.6 17.3 64 141-212 94-162 (340)
11 TIGR03587 Pse_Me-ase pseudamin 96.8 0.011 2.4E-07 53.4 10.5 45 161-212 44-88 (204)
12 TIGR03438 probable methyltrans 96.8 0.0041 8.9E-08 59.3 7.7 45 162-212 65-109 (301)
13 PRK01683 trans-aconitate 2-met 96.8 0.01 2.3E-07 54.4 10.1 53 153-212 24-76 (258)
14 PRK06202 hypothetical protein; 96.8 0.018 3.8E-07 52.3 11.2 50 160-212 60-109 (232)
15 smart00650 rADc Ribosomal RNA 96.8 0.0039 8.4E-08 54.1 6.6 49 155-212 8-56 (169)
16 PRK07580 Mg-protoporphyrin IX 96.8 0.012 2.5E-07 52.7 9.8 54 150-212 53-106 (230)
17 PF13847 Methyltransf_31: Meth 96.8 0.0096 2.1E-07 50.4 8.8 82 161-265 4-89 (152)
18 PF12847 Methyltransf_18: Meth 96.7 0.0039 8.4E-08 49.3 6.0 43 162-211 3-45 (112)
19 PRK11036 putative S-adenosyl-L 96.7 0.011 2.5E-07 54.5 9.7 52 151-212 36-87 (255)
20 COG0030 KsgA Dimethyladenosine 96.6 0.0086 1.9E-07 56.8 8.2 43 161-212 31-73 (259)
21 PHA03411 putative methyltransf 96.6 0.017 3.7E-07 55.4 10.1 67 125-211 42-108 (279)
22 TIGR02072 BioC biotin biosynth 96.5 0.0089 1.9E-07 53.0 7.5 62 144-212 18-79 (240)
23 TIGR02752 MenG_heptapren 2-hep 96.5 0.029 6.2E-07 50.5 10.5 55 152-212 37-91 (231)
24 PF00398 RrnaAD: Ribosomal RNA 96.4 0.0057 1.2E-07 57.2 5.9 44 160-212 30-73 (262)
25 PRK00274 ksgA 16S ribosomal RN 96.4 0.0097 2.1E-07 56.0 7.2 67 124-212 19-85 (272)
26 TIGR02021 BchM-ChlM magnesium 96.4 0.029 6.3E-07 50.4 10.0 45 160-213 55-99 (219)
27 TIGR03533 L3_gln_methyl protei 96.4 0.054 1.2E-06 51.5 12.2 70 129-212 97-166 (284)
28 TIGR00755 ksgA dimethyladenosi 96.4 0.01 2.2E-07 55.0 7.0 48 156-212 25-72 (253)
29 PF13649 Methyltransf_25: Meth 96.3 0.0068 1.5E-07 47.8 4.9 45 164-212 1-45 (101)
30 TIGR02469 CbiT precorrin-6Y C5 96.3 0.014 3E-07 46.5 6.5 51 155-212 14-64 (124)
31 PRK11805 N5-glutamine S-adenos 96.3 0.055 1.2E-06 52.1 11.7 71 129-213 109-179 (307)
32 PRK14103 trans-aconitate 2-met 96.3 0.034 7.3E-07 51.3 9.8 54 149-209 18-71 (255)
33 PRK09328 N5-glutamine S-adenos 96.2 0.043 9.4E-07 50.6 10.3 46 160-212 108-153 (275)
34 PF08242 Methyltransf_12: Meth 96.2 0.00068 1.5E-08 53.1 -1.7 42 165-213 1-42 (99)
35 PRK08317 hypothetical protein; 96.1 0.085 1.8E-06 46.6 11.5 51 154-210 13-63 (241)
36 PRK13944 protein-L-isoaspartat 96.0 0.033 7.1E-07 50.1 8.3 46 162-213 74-119 (205)
37 PRK00312 pcm protein-L-isoaspa 96.0 0.23 5.1E-06 44.4 13.6 65 129-213 58-122 (212)
38 PRK08287 cobalt-precorrin-6Y C 95.9 0.022 4.7E-07 50.1 6.6 49 157-212 28-76 (187)
39 PTZ00338 dimethyladenosine tra 95.9 0.023 5E-07 54.5 7.0 44 161-213 37-80 (294)
40 PRK00121 trmB tRNA (guanine-N( 95.8 0.019 4.1E-07 51.6 6.0 64 138-213 23-86 (202)
41 TIGR00536 hemK_fam HemK family 95.8 0.14 3E-06 48.4 11.8 44 162-212 116-159 (284)
42 KOG0820 Ribosomal RNA adenine 95.7 0.028 6.2E-07 54.0 6.7 54 153-215 51-104 (315)
43 smart00138 MeTrc Methyltransfe 95.7 0.24 5.3E-06 46.5 13.0 122 81-210 22-151 (264)
44 PRK13942 protein-L-isoaspartat 95.7 0.04 8.6E-07 49.9 7.3 47 161-213 77-123 (212)
45 TIGR00537 hemK_rel_arch HemK-r 95.6 0.054 1.2E-06 47.2 7.8 42 162-212 21-62 (179)
46 PF13679 Methyltransf_32: Meth 95.6 0.082 1.8E-06 44.8 8.7 50 159-211 24-73 (141)
47 TIGR03534 RF_mod_PrmC protein- 95.6 0.074 1.6E-06 48.1 8.9 45 161-212 88-132 (251)
48 PF13489 Methyltransf_23: Meth 95.6 0.014 3E-07 48.6 3.7 39 159-206 21-59 (161)
49 TIGR03704 PrmC_rel_meth putati 95.6 0.082 1.8E-06 49.3 9.2 46 161-213 87-132 (251)
50 PRK09489 rsmC 16S ribosomal RN 95.5 0.063 1.4E-06 52.6 8.6 45 162-213 198-242 (342)
51 PRK00107 gidB 16S rRNA methylt 95.4 0.071 1.5E-06 47.9 8.0 79 125-213 13-91 (187)
52 TIGR00080 pimt protein-L-isoas 95.4 0.064 1.4E-06 48.3 7.8 48 160-213 77-124 (215)
53 PRK14967 putative methyltransf 95.4 0.092 2E-06 47.6 8.8 43 162-212 38-80 (223)
54 PRK11705 cyclopropane fatty ac 95.4 0.14 3.1E-06 50.8 10.8 56 149-212 156-211 (383)
55 PRK07402 precorrin-6B methylas 95.3 0.047 1E-06 48.3 6.5 45 161-212 41-85 (196)
56 PF05185 PRMT5: PRMT5 arginine 95.3 0.079 1.7E-06 53.9 8.9 66 138-206 163-229 (448)
57 PRK10258 biotin biosynthesis p 95.3 0.07 1.5E-06 48.9 7.7 42 161-211 43-84 (251)
58 PRK00216 ubiE ubiquinone/menaq 95.3 0.071 1.5E-06 47.4 7.6 46 161-212 52-97 (239)
59 PRK00377 cbiT cobalt-precorrin 95.3 0.06 1.3E-06 47.9 6.9 53 155-213 35-87 (198)
60 PF13659 Methyltransf_26: Meth 95.2 0.046 1E-06 43.5 5.5 44 162-213 2-45 (117)
61 PRK11088 rrmA 23S rRNA methylt 95.2 0.078 1.7E-06 49.6 7.8 46 162-211 87-132 (272)
62 TIGR00091 tRNA (guanine-N(7)-) 95.2 0.043 9.2E-07 48.9 5.7 44 162-212 18-61 (194)
63 PRK01544 bifunctional N5-gluta 95.1 0.093 2E-06 54.0 8.8 45 161-212 139-183 (506)
64 KOG2904 Predicted methyltransf 95.1 0.082 1.8E-06 51.0 7.7 71 128-210 121-191 (328)
65 PRK15001 SAM-dependent 23S rib 95.0 0.092 2E-06 52.3 8.2 45 162-213 230-274 (378)
66 TIGR02987 met_A_Alw26 type II 95.0 0.055 1.2E-06 55.4 6.8 83 127-213 2-85 (524)
67 PLN02396 hexaprenyldihydroxybe 95.0 0.096 2.1E-06 51.0 8.0 42 161-211 132-173 (322)
68 COG2890 HemK Methylase of poly 94.8 0.16 3.6E-06 48.3 9.1 43 163-212 113-155 (280)
69 TIGR00138 gidB 16S rRNA methyl 94.8 0.086 1.9E-06 46.8 6.5 44 162-212 44-87 (181)
70 PF08241 Methyltransf_11: Meth 94.7 0.066 1.4E-06 40.2 5.0 41 165-213 1-41 (95)
71 TIGR01934 MenG_MenH_UbiE ubiqu 94.7 0.12 2.6E-06 45.4 7.4 51 156-212 35-85 (223)
72 PRK11207 tellurite resistance 94.7 0.076 1.7E-06 47.4 6.0 43 161-212 31-73 (197)
73 PF07757 AdoMet_MTase: Predict 94.6 0.054 1.2E-06 45.3 4.5 39 140-178 36-76 (112)
74 COG2518 Pcm Protein-L-isoaspar 94.6 0.45 9.7E-06 44.0 10.8 71 123-214 47-117 (209)
75 TIGR01983 UbiG ubiquinone bios 94.5 0.15 3.2E-06 45.5 7.5 62 142-212 26-88 (224)
76 COG4106 Tam Trans-aconitate me 94.4 0.072 1.6E-06 49.9 5.3 88 152-266 22-109 (257)
77 PRK05134 bifunctional 3-demeth 94.4 0.31 6.7E-06 43.9 9.3 44 160-212 48-91 (233)
78 PRK05785 hypothetical protein; 94.4 0.13 2.9E-06 47.1 7.0 42 161-210 52-93 (226)
79 PRK00811 spermidine synthase; 94.4 0.13 2.8E-06 48.8 7.1 74 128-213 49-122 (283)
80 COG2263 Predicted RNA methylas 94.3 0.35 7.7E-06 44.2 9.4 44 162-213 47-90 (198)
81 KOG1540 Ubiquinone biosynthesi 94.2 0.26 5.6E-06 47.2 8.7 55 156-211 96-150 (296)
82 PRK04457 spermidine synthase; 94.2 0.086 1.9E-06 49.6 5.6 47 159-212 65-111 (262)
83 PTZ00098 phosphoethanolamine N 94.2 0.16 3.5E-06 47.6 7.4 50 155-212 47-96 (263)
84 PF02384 N6_Mtase: N-6 DNA Met 94.2 0.086 1.9E-06 49.9 5.5 74 127-211 24-97 (311)
85 TIGR00417 speE spermidine synt 94.1 0.16 3.5E-06 47.7 7.1 63 139-213 56-118 (270)
86 PLN02233 ubiquinone biosynthes 94.1 0.22 4.7E-06 46.6 8.0 49 157-211 70-118 (261)
87 TIGR00406 prmA ribosomal prote 94.1 0.27 6E-06 46.6 8.7 43 162-212 161-203 (288)
88 TIGR00477 tehB tellurite resis 94.0 0.12 2.6E-06 46.1 5.8 42 161-211 31-72 (195)
89 PLN02336 phosphoethanolamine N 94.0 0.52 1.1E-05 47.4 11.0 44 160-211 266-309 (475)
90 PRK14966 unknown domain/N5-glu 94.0 0.61 1.3E-05 47.3 11.4 45 162-213 253-297 (423)
91 PRK12335 tellurite resistance 93.8 0.27 5.8E-06 46.5 8.1 42 162-212 122-163 (287)
92 cd02440 AdoMet_MTases S-adenos 93.8 0.12 2.7E-06 37.9 4.7 38 163-208 1-38 (107)
93 TIGR03439 methyl_EasF probable 93.8 0.32 6.9E-06 47.4 8.7 49 161-212 77-125 (319)
94 PLN02585 magnesium protoporphy 93.7 0.23 4.9E-06 48.3 7.6 43 161-212 145-187 (315)
95 PRK13943 protein-L-isoaspartat 93.6 0.21 4.4E-06 48.8 7.1 46 161-212 81-126 (322)
96 COG2226 UbiE Methylase involve 93.5 0.28 6E-06 46.1 7.5 51 156-213 47-97 (238)
97 PRK11873 arsM arsenite S-adeno 93.4 0.42 9.1E-06 44.3 8.5 46 161-212 78-123 (272)
98 COG4123 Predicted O-methyltran 93.4 0.15 3.3E-06 48.1 5.5 57 142-212 33-89 (248)
99 PLN02490 MPBQ/MSBQ methyltrans 93.3 0.52 1.1E-05 46.4 9.4 44 161-211 114-157 (340)
100 PF01135 PCMT: Protein-L-isoas 93.3 0.31 6.6E-06 44.7 7.3 48 161-214 73-120 (209)
101 PF06325 PrmA: Ribosomal prote 93.3 0.39 8.4E-06 46.4 8.2 90 147-262 149-238 (295)
102 PRK04266 fibrillarin; Provisio 93.2 0.34 7.4E-06 44.7 7.4 50 154-210 66-115 (226)
103 COG2264 PrmA Ribosomal protein 92.8 0.47 1E-05 46.1 8.1 57 147-212 150-206 (300)
104 PF01209 Ubie_methyltran: ubiE 92.7 0.14 2.9E-06 47.6 4.2 48 160-213 47-94 (233)
105 PRK14968 putative methyltransf 92.7 0.45 9.7E-06 40.8 7.1 42 162-212 25-66 (188)
106 PF05401 NodS: Nodulation prot 92.6 0.67 1.5E-05 42.6 8.3 50 155-213 38-87 (201)
107 PRK00517 prmA ribosomal protei 92.6 0.35 7.6E-06 44.7 6.7 43 162-212 121-163 (250)
108 smart00828 PKS_MT Methyltransf 92.4 0.25 5.3E-06 44.2 5.3 43 163-212 2-44 (224)
109 COG2813 RsmC 16S RNA G1207 met 92.3 0.96 2.1E-05 44.0 9.5 75 126-213 126-204 (300)
110 TIGR01444 fkbM_fam methyltrans 92.3 0.23 4.9E-06 41.1 4.6 43 163-212 1-43 (143)
111 PF05206 TRM13: Methyltransfer 92.1 0.37 8E-06 45.7 6.3 47 153-201 10-57 (259)
112 TIGR00438 rrmJ cell division p 92.0 0.54 1.2E-05 41.3 6.9 38 160-203 32-69 (188)
113 PRK10909 rsmD 16S rRNA m(2)G96 91.9 0.58 1.2E-05 42.5 7.0 44 162-213 55-98 (199)
114 PRK11188 rrmJ 23S rRNA methylt 91.5 0.26 5.6E-06 44.7 4.4 35 161-201 52-86 (209)
115 PRK03522 rumB 23S rRNA methylu 91.5 0.58 1.3E-05 44.9 7.0 42 162-212 175-216 (315)
116 PF10294 Methyltransf_16: Puta 91.4 0.59 1.3E-05 41.1 6.4 63 142-212 24-89 (173)
117 PLN02366 spermidine synthase 91.2 0.84 1.8E-05 44.2 7.8 73 129-213 65-137 (308)
118 PF01596 Methyltransf_3: O-met 91.2 0.89 1.9E-05 41.5 7.6 46 162-213 47-92 (205)
119 PRK13168 rumA 23S rRNA m(5)U19 91.2 0.71 1.5E-05 46.4 7.6 59 142-212 282-340 (443)
120 PRK06922 hypothetical protein; 91.0 0.46 1E-05 50.7 6.2 44 162-212 420-463 (677)
121 COG2519 GCD14 tRNA(1-methylade 90.8 0.79 1.7E-05 43.6 7.0 54 155-214 89-142 (256)
122 PF09243 Rsm22: Mitochondrial 90.8 1.7 3.7E-05 41.1 9.4 48 160-213 33-80 (274)
123 TIGR02081 metW methionine bios 90.7 0.43 9.4E-06 42.1 5.0 39 162-208 15-53 (194)
124 PRK14121 tRNA (guanine-N(7)-)- 90.7 0.58 1.3E-05 47.0 6.3 43 162-211 124-166 (390)
125 PLN02781 Probable caffeoyl-CoA 90.5 0.85 1.8E-05 42.1 6.9 46 162-213 70-115 (234)
126 TIGR00452 methyltransferase, p 90.4 1 2.3E-05 43.7 7.7 44 154-205 115-158 (314)
127 PRK01581 speE spermidine synth 90.3 1.1 2.4E-05 44.7 7.9 59 139-209 134-192 (374)
128 TIGR02085 meth_trns_rumB 23S r 89.8 0.89 1.9E-05 44.9 6.8 42 162-212 235-276 (374)
129 PTZ00146 fibrillarin; Provisio 89.7 0.77 1.7E-05 44.4 6.1 39 161-205 133-171 (293)
130 COG0421 SpeE Spermidine syntha 89.6 1.1 2.3E-05 43.1 7.0 73 131-215 52-124 (282)
131 PLN02336 phosphoethanolamine N 89.2 0.88 1.9E-05 45.8 6.3 38 162-208 39-76 (475)
132 PF07021 MetW: Methionine bios 89.1 1.1 2.4E-05 40.9 6.3 36 162-205 15-50 (193)
133 KOG0822 Protein kinase inhibit 89.0 0.86 1.9E-05 47.6 6.1 64 139-205 346-409 (649)
134 PF02390 Methyltransf_4: Putat 89.0 1.1 2.4E-05 40.4 6.2 47 157-211 15-61 (195)
135 TIGR02143 trmA_only tRNA (urac 88.6 1.2 2.5E-05 43.8 6.6 42 163-213 200-241 (353)
136 PF08704 GCD14: tRNA methyltra 88.4 1.7 3.8E-05 40.9 7.3 52 156-213 36-87 (247)
137 PLN02823 spermine synthase 88.2 2 4.3E-05 42.2 7.9 73 129-213 77-149 (336)
138 KOG4300 Predicted methyltransf 88.1 1.6 3.4E-05 40.9 6.7 50 156-213 72-121 (252)
139 COG2230 Cfa Cyclopropane fatty 88.1 2.5 5.4E-05 40.8 8.3 65 141-213 53-117 (283)
140 PF08123 DOT1: Histone methyla 87.9 1.7 3.7E-05 39.7 6.8 65 138-209 20-84 (205)
141 COG0220 Predicted S-adenosylme 87.9 1.4 3.1E-05 40.9 6.3 48 157-211 45-92 (227)
142 TIGR00479 rumA 23S rRNA (uraci 87.8 1.7 3.8E-05 43.3 7.3 42 162-212 294-335 (431)
143 PRK04148 hypothetical protein; 87.6 1.8 4E-05 37.3 6.4 55 144-210 3-58 (134)
144 TIGR02716 C20_methyl_CrtF C-20 87.6 1.3 2.8E-05 42.0 6.0 46 159-212 148-193 (306)
145 TIGR00095 RNA methyltransferas 87.6 0.89 1.9E-05 40.7 4.7 43 162-212 51-93 (189)
146 PRK03612 spermidine synthase; 87.3 0.81 1.8E-05 47.3 4.8 59 139-209 281-339 (521)
147 PF12147 Methyltransf_20: Puta 87.2 6.2 0.00013 38.5 10.4 85 160-266 135-226 (311)
148 PRK05031 tRNA (uracil-5-)-meth 87.1 1.6 3.6E-05 42.9 6.6 41 163-212 209-249 (362)
149 TIGR01177 conserved hypothetic 86.4 2.5 5.4E-05 40.7 7.4 66 131-212 160-225 (329)
150 PRK15068 tRNA mo(5)U34 methylt 86.3 1.7 3.8E-05 42.1 6.2 36 162-205 124-159 (322)
151 PF02353 CMAS: Mycolic acid cy 86.1 3.1 6.8E-05 39.5 7.7 100 142-265 44-143 (273)
152 PRK10901 16S rRNA methyltransf 85.1 2.5 5.5E-05 42.3 6.9 46 161-213 245-290 (427)
153 PF00891 Methyltransf_2: O-met 85.0 3.8 8.2E-05 37.2 7.5 60 134-200 69-133 (241)
154 TIGR00478 tly hemolysin TlyA f 84.9 2.8 6.1E-05 39.0 6.7 47 149-203 63-110 (228)
155 COG4121 Uncharacterized conser 84.6 0.71 1.5E-05 43.8 2.6 76 128-204 24-107 (252)
156 PLN02476 O-methyltransferase 84.0 3.5 7.5E-05 39.6 7.0 46 162-213 120-165 (278)
157 KOG1541 Predicted protein carb 82.4 1.9 4.2E-05 40.7 4.4 71 128-209 20-90 (270)
158 PF03848 TehB: Tellurite resis 81.4 12 0.00025 34.1 9.0 40 160-208 30-69 (192)
159 PF03291 Pox_MCEL: mRNA cappin 81.0 3.2 6.9E-05 40.7 5.6 44 160-211 62-105 (331)
160 PF05219 DREV: DREV methyltran 80.7 2.8 6.1E-05 40.1 5.0 106 83-209 22-134 (265)
161 COG2242 CobL Precorrin-6B meth 80.4 5.1 0.00011 36.5 6.3 44 162-212 36-79 (187)
162 COG2227 UbiG 2-polyprenyl-3-me 80.2 2.3 4.9E-05 40.2 4.1 78 162-266 61-141 (243)
163 COG4301 Uncharacterized conser 80.2 4.8 0.0001 38.8 6.2 57 136-205 64-120 (321)
164 PF01564 Spermine_synth: Sperm 80.0 3.8 8.3E-05 38.2 5.6 73 129-213 50-122 (246)
165 KOG2361 Predicted methyltransf 79.9 1.9 4.2E-05 41.0 3.5 59 147-210 55-116 (264)
166 TIGR00446 nop2p NOL1/NOP2/sun 79.8 3.6 7.9E-05 38.5 5.4 46 162-213 73-118 (264)
167 KOG3191 Predicted N6-DNA-methy 78.8 8.9 0.00019 35.3 7.3 50 161-216 44-93 (209)
168 PRK14904 16S rRNA methyltransf 78.6 5.8 0.00013 40.0 6.8 46 162-213 252-297 (445)
169 PRK13255 thiopurine S-methyltr 78.5 6.2 0.00013 36.1 6.4 38 160-206 37-74 (218)
170 COG4122 Predicted O-methyltran 78.4 6.4 0.00014 36.6 6.5 47 162-214 61-107 (219)
171 PLN02672 methionine S-methyltr 78.0 3.1 6.8E-05 46.9 5.0 44 162-212 120-163 (1082)
172 PRK14902 16S rRNA methyltransf 77.9 6.6 0.00014 39.5 7.0 46 162-213 252-297 (444)
173 TIGR03840 TMPT_Se_Te thiopurin 77.9 5.9 0.00013 36.1 6.1 37 161-206 35-71 (213)
174 TIGR00563 rsmB ribosomal RNA s 77.7 6.4 0.00014 39.4 6.7 45 162-213 240-284 (426)
175 PRK00536 speE spermidine synth 77.4 7.2 0.00016 37.1 6.6 62 140-215 57-118 (262)
176 KOG2811 Uncharacterized conser 77.1 4.4 9.6E-05 40.7 5.2 36 162-201 184-219 (420)
177 PLN03075 nicotianamine synthas 76.3 12 0.00026 36.3 7.9 47 161-212 124-170 (296)
178 PRK11727 23S rRNA mA1618 methy 75.1 10 0.00023 37.1 7.2 47 160-213 114-160 (321)
179 PTZ00357 methyltransferase; Pr 74.9 15 0.00032 40.2 8.6 39 161-202 701-739 (1072)
180 TIGR00308 TRM1 tRNA(guanine-26 73.1 9.7 0.00021 38.0 6.6 66 142-213 25-91 (374)
181 PRK04338 N(2),N(2)-dimethylgua 71.6 13 0.00029 37.0 7.2 44 162-212 59-102 (382)
182 KOG0821 Predicted ribosomal RN 71.5 4.7 0.0001 38.3 3.6 42 156-205 46-87 (326)
183 PRK14903 16S rRNA methyltransf 71.0 9.4 0.0002 38.5 6.0 46 162-213 239-284 (431)
184 PRK14901 16S rRNA methyltransf 70.7 12 0.00026 37.6 6.7 46 162-213 254-299 (434)
185 PF03602 Cons_hypoth95: Conser 70.1 8.2 0.00018 34.5 4.9 67 133-213 21-87 (183)
186 COG0286 HsdM Type I restrictio 67.9 10 0.00022 39.0 5.6 70 128-211 165-234 (489)
187 PLN02589 caffeoyl-CoA O-methyl 67.2 21 0.00045 33.6 7.1 64 137-213 63-126 (247)
188 KOG1270 Methyltransferases [Co 66.1 6.1 0.00013 38.1 3.3 40 162-210 91-130 (282)
189 COG4976 Predicted methyltransf 65.2 8 0.00017 36.9 3.8 40 161-209 126-165 (287)
190 PF05891 Methyltransf_PK: AdoM 64.9 5.5 0.00012 37.1 2.7 46 160-213 55-100 (218)
191 PRK01544 bifunctional N5-gluta 64.3 16 0.00034 37.8 6.2 36 161-203 348-383 (506)
192 KOG3010 Methyltransferase [Gen 64.3 14 0.0003 35.3 5.3 39 163-210 36-74 (261)
193 PRK11783 rlmL 23S rRNA m(2)G24 63.8 49 0.0011 35.6 10.0 69 142-213 174-278 (702)
194 PF14737 DUF4470: Domain of un 63.3 16 0.00036 29.2 4.9 52 157-211 20-73 (100)
195 PRK15128 23S rRNA m(5)C1962 me 63.1 11 0.00023 37.9 4.6 43 162-212 222-264 (396)
196 PRK11783 rlmL 23S rRNA m(2)G24 62.5 10 0.00022 40.7 4.6 43 162-212 540-582 (702)
197 PRK00050 16S rRNA m(4)C1402 me 61.2 28 0.00061 33.7 7.0 46 162-213 21-66 (296)
198 PRK01747 mnmC bifunctional tRN 60.9 29 0.00064 36.6 7.6 68 141-209 34-111 (662)
199 PF06080 DUF938: Protein of un 59.7 18 0.00039 33.3 5.1 40 163-209 28-67 (204)
200 PF03514 GRAS: GRAS domain fam 58.0 32 0.00069 34.2 6.9 57 141-199 93-149 (374)
201 COG0802 Predicted ATPase or ki 56.2 20 0.00042 31.6 4.5 38 138-183 11-50 (149)
202 PRK13256 thiopurine S-methyltr 54.8 37 0.0008 31.6 6.3 48 153-209 36-83 (226)
203 KOG2899 Predicted methyltransf 54.0 24 0.00051 34.0 4.9 47 160-213 58-104 (288)
204 PF11784 DUF3320: Protein of u 53.7 24 0.00052 25.3 3.9 37 74-111 1-37 (52)
205 KOG2915 tRNA(1-methyladenosine 53.2 43 0.00092 32.7 6.6 46 161-212 106-151 (314)
206 COG4076 Predicted RNA methylas 51.9 38 0.00082 31.6 5.7 60 132-211 15-74 (252)
207 PF01170 UPF0020: Putative RNA 51.1 1.1E+02 0.0024 26.8 8.6 51 162-213 30-83 (179)
208 COG0500 SmtA SAM-dependent met 51.1 39 0.00085 24.9 4.9 41 164-211 52-92 (257)
209 COG5459 Predicted rRNA methyla 50.3 7.7 0.00017 39.1 1.1 42 161-208 114-155 (484)
210 COG4262 Predicted spermidine s 46.8 29 0.00062 35.4 4.5 45 162-213 291-337 (508)
211 PTZ00387 epsilon tubulin; Prov 45.7 94 0.002 32.0 8.2 74 111-187 85-162 (465)
212 KOG1271 Methyltransferases [Ge 45.4 32 0.00069 31.9 4.2 93 100-208 14-108 (227)
213 KOG1774 Small nuclear ribonucl 44.8 15 0.00032 29.4 1.7 35 100-134 43-82 (88)
214 PF01269 Fibrillarin: Fibrilla 44.6 61 0.0013 30.5 6.0 36 162-203 75-110 (229)
215 KOG3987 Uncharacterized conser 44.0 12 0.00025 35.4 1.2 68 125-209 85-152 (288)
216 PF05050 Methyltransf_21: Meth 43.3 53 0.0012 27.0 5.1 40 166-210 1-42 (167)
217 KOG3178 Hydroxyindole-O-methyl 42.9 64 0.0014 32.1 6.2 77 125-211 135-219 (342)
218 PF08003 Methyltransf_9: Prote 42.1 26 0.00057 34.4 3.3 34 162-203 117-150 (315)
219 PF05148 Methyltransf_8: Hypot 41.8 32 0.00069 32.2 3.7 22 157-178 69-90 (219)
220 COG1331 Highly conserved prote 41.6 20 0.00044 38.5 2.7 42 102-143 300-345 (667)
221 PF05724 TPMT: Thiopurine S-me 41.6 72 0.0016 29.3 6.0 101 151-267 28-134 (218)
222 KOG2918 Carboxymethyl transfer 41.5 62 0.0014 32.0 5.8 67 134-207 60-129 (335)
223 PRK10742 putative methyltransf 40.5 67 0.0014 30.6 5.7 69 129-213 57-132 (250)
224 PLN02668 indole-3-acetate carb 40.4 57 0.0012 32.9 5.6 47 137-183 36-90 (386)
225 COG1352 CheR Methylase of chem 40.3 1.5E+02 0.0033 28.3 8.1 116 81-205 22-143 (268)
226 KOG2244 Highly conserved prote 39.3 15 0.00032 38.9 1.3 42 103-144 364-416 (786)
227 COG3876 Uncharacterized protei 38.8 8.9 0.00019 37.9 -0.4 36 109-144 75-113 (409)
228 KOG3924 Putative protein methy 38.6 67 0.0015 32.7 5.6 71 138-212 170-240 (419)
229 KOG1975 mRNA cap methyltransfe 38.3 47 0.001 33.3 4.4 40 163-210 120-159 (389)
230 PF01728 FtsJ: FtsJ-like methy 37.6 64 0.0014 27.8 4.8 47 150-202 10-59 (181)
231 PRK10646 ADP-binding protein; 37.3 68 0.0015 28.2 4.9 41 135-183 11-53 (153)
232 KOG2793 Putative N2,N2-dimethy 37.0 50 0.0011 31.4 4.3 42 161-210 87-128 (248)
233 KOG2940 Predicted methyltransf 34.6 89 0.0019 30.1 5.5 62 139-209 52-113 (325)
234 PHA01634 hypothetical protein 33.8 65 0.0014 28.3 4.1 44 162-213 30-73 (156)
235 KOG2651 rRNA adenine N-6-methy 33.4 1.3E+02 0.0028 30.9 6.7 35 163-205 156-190 (476)
236 cd02190 epsilon_tubulin The tu 32.6 2E+02 0.0043 28.7 8.0 50 138-187 78-130 (379)
237 KOG3420 Predicted RNA methylas 32.2 77 0.0017 28.5 4.4 65 130-209 25-89 (185)
238 PRK10719 eutA reactivating fac 31.9 2.7E+02 0.0058 29.1 8.9 96 67-175 49-161 (475)
239 PF03141 Methyltransf_29: Puta 31.5 41 0.0009 35.1 3.0 55 127-181 80-138 (506)
240 PF05958 tRNA_U5-meth_tr: tRNA 31.0 71 0.0015 31.3 4.5 41 163-212 199-239 (352)
241 TIGR00150 HI0065_YjeE ATPase, 29.7 1.1E+02 0.0023 26.2 4.8 18 166-183 30-47 (133)
242 cd06059 Tubulin The tubulin su 28.7 2.2E+02 0.0049 28.1 7.6 48 139-186 69-119 (382)
243 PF01402 RHH_1: Ribbon-helix-h 28.1 93 0.002 20.1 3.3 28 83-112 7-34 (39)
244 PF01739 CheR: CheR methyltran 28.1 2.2E+02 0.0048 25.7 6.9 50 160-209 31-82 (196)
245 COG1217 TypA Predicted membran 27.8 31 0.00068 36.1 1.4 79 122-205 315-413 (603)
246 COG3897 Predicted methyltransf 26.9 50 0.0011 30.8 2.4 33 142-177 64-96 (218)
247 COG0116 Predicted N6-adenine-s 26.8 3.2E+02 0.0069 27.7 8.2 33 142-177 176-208 (381)
248 PF11187 DUF2974: Protein of u 26.3 72 0.0016 29.4 3.4 80 62-151 116-209 (224)
249 KOG1499 Protein arginine N-met 26.2 68 0.0015 32.0 3.4 34 162-203 62-95 (346)
250 PRK10611 chemotaxis methyltran 26.1 6E+02 0.013 24.5 10.0 117 81-209 45-165 (287)
251 PRK15455 PrkA family serine pr 24.6 2.6E+02 0.0057 30.2 7.4 98 86-186 3-131 (644)
252 PF02254 TrkA_N: TrkA-N domain 24.1 1.4E+02 0.003 23.5 4.3 36 170-210 5-40 (116)
253 PF13578 Methyltransf_24: Meth 23.0 42 0.00092 26.2 1.1 34 165-202 1-34 (106)
254 COG0742 N6-adenine-specific me 22.3 1.6E+02 0.0034 26.9 4.7 67 133-213 22-88 (187)
255 PF02527 GidB: rRNA small subu 22.0 2.7E+02 0.0058 25.0 6.1 43 163-212 51-93 (184)
256 PF02367 UPF0079: Uncharacteri 21.1 1.1E+02 0.0024 25.8 3.3 18 166-183 23-40 (123)
257 PRK08246 threonine dehydratase 21.1 3.3E+02 0.0071 26.0 6.9 42 151-201 161-202 (310)
258 PF06757 Ins_allergen_rp: Inse 20.7 1.4E+02 0.003 26.3 4.0 89 85-182 3-114 (179)
259 KOG1500 Protein arginine N-met 20.5 1.4E+02 0.003 30.3 4.2 41 162-211 179-219 (517)
No 1
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=6.8e-54 Score=412.82 Aligned_cols=187 Identities=36% Similarity=0.680 Sum_probs=172.9
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHhhcCCCCcccCCCCCCCCCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceE
Q 021589 85 ELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNL 164 (310)
Q Consensus 85 ~L~~~i~~~I~~~~GpIsf~dFM~~aLY~P~~GYY~~~~~~G~~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~I 164 (310)
.+..+|++.|+.. |||||++||++|||+|++|||+++.+||+.||||||||||++|||+||.||+++|+++|.|.++.|
T Consensus 3 ~~~~~~~~~i~~~-g~i~f~~fM~~~L~~p~~GYYs~~~~~G~~GDFiTApels~lFGella~~~~~~wq~~g~p~~~~l 81 (370)
T COG1565 3 LLALIIRALIAQG-GPISFSDFMELALYDPEHGYYSSAVKIGRKGDFITAPELSQLFGELLAEQFLQLWQELGRPAPLKL 81 (370)
T ss_pred cHHHHHHHHHhcC-CCccHHHHHHHHHcCCCCcccccchhccccCCeeechhHHHHHHHHHHHHHHHHHHHhcCCCCceE
Confidence 4567788888875 999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred EEecCCchHHHHHHHHHHh-cCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhhhhcccCCCCeEEecccc
Q 021589 165 VELGPGRGTLMADLLRGAS-KFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALE 243 (310)
Q Consensus 165 vElGaG~GtLa~DIL~~l~-~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~v~W~~sle 243 (310)
||||||+|+||.|||++++ ..|++|+.++|+|||+||.|+++|+++|+.. ...++|....+
T Consensus 82 vEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~------------------~~~~~~~~~~e 143 (370)
T COG1565 82 VEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT------------------EDLIRWVEWVE 143 (370)
T ss_pred EEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc------------------ccchhHHHHHH
Confidence 9999999999999999995 5799999999999999999999999999863 14688888888
Q ss_pred cCCCCCCEEEEEecccccccceeEEEeCCeEEEEEEEecCCCCeeee
Q 021589 244 QVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSAASG 290 (310)
Q Consensus 244 elp~~~~~vIiANE~fDALPvh~f~~~~~~w~E~~V~~~~dg~f~~~ 290 (310)
++|.+.++|||+|||||||||++|.++.+.|+|.+|.-+.++++.+.
T Consensus 144 ~~p~~~~~i~~~NElfDAlPv~q~~~~~~~~~Er~~~~~~~~~~~~~ 190 (370)
T COG1565 144 DLPKKFPGIVVSNELFDALPVEQFIRTKGLFVERVVVLDAEGRLVFS 190 (370)
T ss_pred hccccCceEEEechhhccccceeEeccCceEEEEeeccCcccceeec
Confidence 99998899999999999999999999999999999976666677775
No 2
>KOG2901 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.1e-47 Score=365.35 Aligned_cols=211 Identities=66% Similarity=1.121 Sum_probs=190.2
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHhcCCcccHHHHHHHhhcCCCCcccCCCCCCCCCCCeecCCChhHHHHHHHHHHHHHH
Q 021589 73 PPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCL 152 (310)
Q Consensus 73 ~~~~~~~~~~~~~L~~~i~~~I~~~~GpIsf~dFM~~aLY~P~~GYY~~~~~~G~~GDFiTSpeIs~~FGe~Ia~~~~~~ 152 (310)
||.++|+.. ..|+++|+..|+.+ ||||+++||..||.||.+|||+++++||++|||+||||++|+|||||++|....
T Consensus 24 p~~~sp~~t--~~l~k~L~~ki~~s-gpi~vaeym~evLtnp~~gyy~~rdvfg~~gdfitSpeisq~fgeligvw~~~e 100 (415)
T KOG2901|consen 24 PPDHSPEET--PHLVKHLKSKIKST-GPITVAEYMKEVLTNPKAGYYMNRDVFGAKGDFITSPEISQIFGEMIGVWTVSE 100 (415)
T ss_pred CCCCCcccc--HHHHHHHHhhhhcc-CCccHHHHHHHHHhCcccceeccHHHhhcccCccCCccHHHHHHHhhheeEEEe
Confidence 566666644 44999999999998 799999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhhhhcccC
Q 021589 153 WEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLA 232 (310)
Q Consensus 153 w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~ 232 (310)
|+++|.|..+++||+|||+|+||.|+|+.+.++. -..++.|+||+||.|.+.|.++|++....+.. +++.++..
T Consensus 101 w~~~g~~~~~qLvelgpgrgtl~~dvl~~~~kf~--~~~vs~hLve~S~~ls~lq~~~l~~~~~~~s~----~~~~tt~s 174 (415)
T KOG2901|consen 101 WEQMGRPERFQLVELGPGRGTLMADVLRVLTKFK--DEDLSVHLVEVSPALSKLQAQNLCCTDESLSE----YKKGSTLS 174 (415)
T ss_pred hhhhCCccceeEEEeccchhHHHHHHHHHHHHhc--CceeeEEEEEecHhHHHHhhcceeEeeccHHH----Hhhccccc
Confidence 9999999999999999999999999999987654 23478999999999999999999987765443 55556667
Q ss_pred CCCeEEecccccCCCCCCEEEEEecccccccceeEEEeCCeEEEEEEEecCCCCeeeeccc
Q 021589 233 GTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSAASGLQI 293 (310)
Q Consensus 233 ~~~v~W~~sleelp~~~~~vIiANE~fDALPvh~f~~~~~~w~E~~V~~~~dg~f~~~~~~ 293 (310)
+.++.|+.+++++|.+. ++|+|||||||||||+|++..++|+|++|++++|+.|.+.+..
T Consensus 175 g~~~~w~~sl~dvp~g~-s~iiahef~DalpVhkfqk~~~~w~eV~vd~~~d~~~rfvls~ 234 (415)
T KOG2901|consen 175 GTPIHWHRTLQDVPSGF-TLIIAHEFFDALPVHQFQKSTRGWCEVMVDVGEDSKFRFVLSP 234 (415)
T ss_pred cCchhcccChhhcCCce-EEEEhHHhhhcCcchhhccCCCCcceeEEeccCcccEEEecCC
Confidence 88999999999999995 9999999999999999999999999999999999888776653
No 3
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=100.00 E-value=3.9e-33 Score=257.62 Aligned_cols=136 Identities=40% Similarity=0.759 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHcCCCC-cceEEEecCCchHHHHHHHHHHhcC-cCccccceEEEEecChhhHHHHHHhccccccCCcCc
Q 021589 144 MVGVWAMCLWEQMGQPN-RVNLVELGPGRGTLMADLLRGASKF-KNFTESLHIHLVECSPTLQKLQHHNLKCMDENNAND 221 (310)
Q Consensus 144 ~Ia~~~~~~w~~~g~p~-~l~IvElGaG~GtLa~DIL~~l~~~-p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~ 221 (310)
|||+|++++|+++|.|. +++|||+|||+|+||.|||+++++. |+++++++|+|||+||.|+++|+++|.....+
T Consensus 1 ~ia~~~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~---- 76 (252)
T PF02636_consen 1 LIARWIAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPK---- 76 (252)
T ss_dssp HHHHHHHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH-------
T ss_pred ChHHHHHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhccc----
Confidence 79999999999999886 5999999999999999999999865 99999999999999999999999999864221
Q ss_pred cchhhhhcccCCCCeEEecccccCCCCCCEEEEEecccccccceeEEEeCCeEEEEEEEec--CCCCeeeecc
Q 021589 222 NVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIA--EDSSAASGLQ 292 (310)
Q Consensus 222 ~~~~~~~~~~~~~~v~W~~sleelp~~~~~vIiANE~fDALPvh~f~~~~~~w~E~~V~~~--~dg~f~~~~~ 292 (310)
....+.+|.|+++++++| .+|||||||||||||||+|++++++|+|++|+++ .+++|.+.+.
T Consensus 77 -------~~~~~~~i~w~~~l~~~p--~~~~iiaNE~~DAlP~~~~~~~~~~w~E~~V~~~~~~~~~~~~~~~ 140 (252)
T PF02636_consen 77 -------DTEFGDPIRWLDDLEEVP--FPGFIIANELFDALPVDRFRKQEGGWRERYVDIDEEKNGRFCFVLS 140 (252)
T ss_dssp -------STTTCGCEEEESSGGCS---CCEEEEEESSGGGS--EEEEEETTEEEEEEEEE---TTS-EEEEEE
T ss_pred -------ccccCCccchhhhhhccc--CCEEEEEeeehhcCceeEEEEcCCeEEEEEEEeccccCCceEEEeC
Confidence 112456899999888887 4899999999999999999999999999999998 4677888764
No 4
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.50 E-value=0.00021 Score=64.03 Aligned_cols=91 Identities=16% Similarity=0.267 Sum_probs=57.9
Q ss_pred CCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhhhhcccCCCCe
Q 021589 157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPV 236 (310)
Q Consensus 157 g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~v 236 (310)
+.-..+.|+|+|||+|-+.+.||++-- .| -...+||.||.......++...... .+++.+
T Consensus 45 ~pesglpVlElGPGTGV~TkaIL~~gv-~~-----~~L~~iE~~~dF~~~L~~~~p~~~i--------------i~gda~ 104 (194)
T COG3963 45 DPESGLPVLELGPGTGVITKAILSRGV-RP-----ESLTAIEYSPDFVCHLNQLYPGVNI--------------INGDAF 104 (194)
T ss_pred CcccCCeeEEEcCCccHhHHHHHhcCC-Cc-----cceEEEEeCHHHHHHHHHhCCCccc--------------cccchh
Confidence 333457899999999999999998752 23 2589999999999988887764321 122222
Q ss_pred EEecccccCCCCCCEEEEEecccccccceeE
Q 021589 237 SWHAALEQVPSGFPTIIVAHEFYDALPVHQF 267 (310)
Q Consensus 237 ~W~~sleelp~~~~~vIiANE~fDALPvh~f 267 (310)
.--..+.+-+......||+--.+-++|.|+-
T Consensus 105 ~l~~~l~e~~gq~~D~viS~lPll~~P~~~~ 135 (194)
T COG3963 105 DLRTTLGEHKGQFFDSVISGLPLLNFPMHRR 135 (194)
T ss_pred hHHHHHhhcCCCeeeeEEeccccccCcHHHH
Confidence 1111222222222356777777777777653
No 5
>PHA03412 putative methyltransferase; Provisional
Probab=97.41 E-value=0.00062 Score=63.85 Aligned_cols=69 Identities=23% Similarity=0.203 Sum_probs=50.2
Q ss_pred CCCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHH
Q 021589 126 GAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQK 205 (310)
Q Consensus 126 G~~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~ 205 (310)
.+.|.|+|+++|...+ + +|. .+ ..+|+|+|||+|.|+..+.+.....+ ..+++.||+++...+
T Consensus 28 ~~~GqFfTP~~iAr~~----~-----i~~-~~---~grVLDlG~GSG~Lalala~~~~~~~----~~~V~aVEID~~Al~ 90 (241)
T PHA03412 28 SELGAFFTPIGLARDF----T-----IDA-CT---SGSVVDLCAGIGGLSFAMVHMMMYAK----PREIVCVELNHTYYK 90 (241)
T ss_pred ccCCccCCCHHHHHHH----H-----Hhc-cC---CCEEEEccChHHHHHHHHHHhcccCC----CcEEEEEECCHHHHH
Confidence 4679999999976553 1 121 11 24999999999999999877642212 258999999999888
Q ss_pred HHHHhc
Q 021589 206 LQHHNL 211 (310)
Q Consensus 206 ~Q~e~L 211 (310)
.-++.+
T Consensus 91 ~Ar~n~ 96 (241)
T PHA03412 91 LGKRIV 96 (241)
T ss_pred HHHhhc
Confidence 777654
No 6
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=97.30 E-value=0.0018 Score=59.06 Aligned_cols=48 Identities=17% Similarity=0.227 Sum_probs=38.5
Q ss_pred cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (310)
Q Consensus 161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~ 213 (310)
..+|+|+|||+|.++..+++.+. .| ..+++-||+|+.+.+.-++++..
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~-~p----~~~v~gvD~s~~ml~~a~~~~~~ 101 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNIN-QP----NVKIIGIDNSQPMVERCRQHIAA 101 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcC-CC----CCeEEEEeCCHHHHHHHHHHHHh
Confidence 35899999999999998877642 12 25899999999999888877753
No 7
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.20 E-value=0.0028 Score=55.31 Aligned_cols=76 Identities=20% Similarity=0.291 Sum_probs=49.7
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhhhhcccCCCCeEEecc
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAA 241 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~v~W~~s 241 (310)
-+|+|+|||+|.++..++.. .|+ .+++.+|+|+...+..++++...... ...+.+.+-
T Consensus 33 ~~vLDlG~G~G~i~~~la~~---~~~----~~v~~vDi~~~a~~~a~~n~~~n~~~---------------~v~~~~~d~ 90 (170)
T PF05175_consen 33 GRVLDLGCGSGVISLALAKR---GPD----AKVTAVDINPDALELAKRNAERNGLE---------------NVEVVQSDL 90 (170)
T ss_dssp CEEEEETSTTSHHHHHHHHT---STC----EEEEEEESBHHHHHHHHHHHHHTTCT---------------TEEEEESST
T ss_pred CeEEEecCChHHHHHHHHHh---CCC----CEEEEEcCCHHHHHHHHHHHHhcCcc---------------ccccccccc
Confidence 48999999999999877653 332 46999999999999888877642110 123444444
Q ss_pred cccCCCCCCEEEEEeccc
Q 021589 242 LEQVPSGFPTIIVAHEFY 259 (310)
Q Consensus 242 leelp~~~~~vIiANE~f 259 (310)
++.++.+..-+|++|=.+
T Consensus 91 ~~~~~~~~fD~Iv~NPP~ 108 (170)
T PF05175_consen 91 FEALPDGKFDLIVSNPPF 108 (170)
T ss_dssp TTTCCTTCEEEEEE---S
T ss_pred cccccccceeEEEEccch
Confidence 455553334789998544
No 8
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=97.14 E-value=0.0042 Score=57.37 Aligned_cols=48 Identities=15% Similarity=0.254 Sum_probs=37.9
Q ss_pred cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (310)
Q Consensus 161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~ 213 (310)
..+|+|+|||+|.++..+++.+. .| ..+++.||+||.+.+.-++++..
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~-~~----~~~v~gvD~S~~ml~~A~~~~~~ 104 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIH-HD----NCKIIAIDNSPAMIERCRRHIDA 104 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcC-CC----CCeEEEEeCCHHHHHHHHHHHHh
Confidence 35899999999999888766542 23 25899999999999988877753
No 9
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=96.91 E-value=0.0064 Score=56.74 Aligned_cols=43 Identities=26% Similarity=0.494 Sum_probs=36.6
Q ss_pred cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
.-+|+|+|||.|+++..+++.. .+++.||+++.+.+..++++.
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~~~---------~~v~~vEid~~~~~~l~~~~~ 72 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAKRA---------KKVYAIELDPRLAEFLRDDEI 72 (258)
T ss_pred cCeEEEEeCccCHHHHHHHHhC---------CEEEEEECCHHHHHHHHHHhc
Confidence 3589999999999999987641 268999999999999888775
No 10
>PLN02244 tocopherol O-methyltransferase
Probab=96.88 E-value=0.077 Score=51.57 Aligned_cols=64 Identities=14% Similarity=0.027 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHcCC-----CCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 141 FGEMVGVWAMCLWEQMGQ-----PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 141 FGe~Ia~~~~~~w~~~g~-----p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
+.+.-.+.+.++.+.++. ....+|+|+|||+|.++..+.+.. ..+++-||+|+.+.+.-+++..
T Consensus 94 ~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~--------g~~v~gvD~s~~~i~~a~~~~~ 162 (340)
T PLN02244 94 HRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKY--------GANVKGITLSPVQAARANALAA 162 (340)
T ss_pred HHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhc--------CCEEEEEECCHHHHHHHHHHHH
Confidence 344444444445555554 344689999999999998876542 1379999999999887666543
No 11
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=96.84 E-value=0.011 Score=53.44 Aligned_cols=45 Identities=27% Similarity=0.186 Sum_probs=35.6
Q ss_pred cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
.-.|+|+|||+|.++..+.+.+ | ..+++-||+|+.+.+.-++++.
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~---~----~~~v~giDiS~~~l~~A~~~~~ 88 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLL---P----FKHIYGVEINEYAVEKAKAYLP 88 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhC---C----CCeEEEEECCHHHHHHHHhhCC
Confidence 3589999999999888876542 2 2479999999999988777653
No 12
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=96.81 E-value=0.0041 Score=59.34 Aligned_cols=45 Identities=24% Similarity=0.239 Sum_probs=36.7
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
.+|+|+|||+|+.+.-+++.+.. ..+|+-||+|+.|.+.-+++|.
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~------~~~~~~iDiS~~mL~~a~~~l~ 109 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQ------PARYVPIDISADALKESAAALA 109 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhcc------CCeEEEEECCHHHHHHHHHHHH
Confidence 58999999999999999988642 2579999999999766555554
No 13
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=96.80 E-value=0.01 Score=54.44 Aligned_cols=53 Identities=21% Similarity=0.236 Sum_probs=39.1
Q ss_pred HHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 153 WEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 153 w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
...++.....+|+|+|||+|.++..+.+.. |. .+++-||+|+.+.+.-++++.
T Consensus 24 l~~~~~~~~~~vLDiGcG~G~~~~~la~~~---~~----~~v~gvD~s~~~i~~a~~~~~ 76 (258)
T PRK01683 24 LARVPLENPRYVVDLGCGPGNSTELLVERW---PA----ARITGIDSSPAMLAEARSRLP 76 (258)
T ss_pred HhhCCCcCCCEEEEEcccCCHHHHHHHHHC---CC----CEEEEEECCHHHHHHHHHhCC
Confidence 334444445699999999999988776542 32 479999999999887776653
No 14
>PRK06202 hypothetical protein; Provisional
Probab=96.76 E-value=0.018 Score=52.35 Aligned_cols=50 Identities=24% Similarity=0.368 Sum_probs=38.3
Q ss_pred CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
.+.+|+|+|||+|.++..+.+..++.. ...+++.||+||.+.+.-+++..
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g---~~~~v~gvD~s~~~l~~a~~~~~ 109 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDG---LRLEVTAIDPDPRAVAFARANPR 109 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCC---CCcEEEEEcCCHHHHHHHHhccc
Confidence 446999999999999988877664321 12479999999999987776543
No 15
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=96.76 E-value=0.0039 Score=54.11 Aligned_cols=49 Identities=24% Similarity=0.454 Sum_probs=38.7
Q ss_pred HcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 155 QMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 155 ~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
.++....-+|+|+|||+|.++..+++.. .+++.||+++.+.+..++++.
T Consensus 8 ~~~~~~~~~vLEiG~G~G~lt~~l~~~~---------~~v~~vE~~~~~~~~~~~~~~ 56 (169)
T smart00650 8 AANLRPGDTVLEIGPGKGALTEELLERA---------ARVTAIEIDPRLAPRLREKFA 56 (169)
T ss_pred hcCCCCcCEEEEECCCccHHHHHHHhcC---------CeEEEEECCHHHHHHHHHHhc
Confidence 3343334589999999999999987641 369999999999998888774
No 16
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=96.75 E-value=0.012 Score=52.75 Aligned_cols=54 Identities=17% Similarity=0.271 Sum_probs=39.0
Q ss_pred HHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 150 MCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 150 ~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
.......+.+...+|+|+|||+|.++..+++.. .+|+.+|+|+.+.+.-++++.
T Consensus 53 ~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~---------~~v~~~D~s~~~i~~a~~~~~ 106 (230)
T PRK07580 53 LSWLPADGDLTGLRILDAGCGVGSLSIPLARRG---------AKVVASDISPQMVEEARERAP 106 (230)
T ss_pred HHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcC---------CEEEEEECCHHHHHHHHHHHH
Confidence 333333334445699999999999988775421 359999999999887777664
No 17
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=96.75 E-value=0.0096 Score=50.39 Aligned_cols=82 Identities=18% Similarity=0.290 Sum_probs=53.2
Q ss_pred cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhhhhcccCCCCeEEe-
Q 021589 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWH- 239 (310)
Q Consensus 161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~v~W~- 239 (310)
..+|+|+|||+|.++..+++.+ .| ..+++-||+|+.+.+.-++++..... ..+...
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~--~~----~~~i~gvD~s~~~i~~a~~~~~~~~~-----------------~ni~~~~ 60 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKEL--NP----GAKIIGVDISEEMIEYAKKRAKELGL-----------------DNIEFIQ 60 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHS--TT----TSEEEEEESSHHHHHHHHHHHHHTTS-----------------TTEEEEE
T ss_pred CCEEEEecCcCcHHHHHHHHhc--CC----CCEEEEEECcHHHHHHhhcccccccc-----------------cccceEE
Confidence 4699999999999999887632 22 34799999999999988886653211 023222
Q ss_pred cccccCCC---CCCEEEEEecccccccce
Q 021589 240 AALEQVPS---GFPTIIVAHEFYDALPVH 265 (310)
Q Consensus 240 ~sleelp~---~~~~vIiANE~fDALPvh 265 (310)
.++.+++. +..-+|+++.++..++-.
T Consensus 61 ~d~~~l~~~~~~~~D~I~~~~~l~~~~~~ 89 (152)
T PF13847_consen 61 GDIEDLPQELEEKFDIIISNGVLHHFPDP 89 (152)
T ss_dssp SBTTCGCGCSSTTEEEEEEESTGGGTSHH
T ss_pred eehhccccccCCCeeEEEEcCchhhccCH
Confidence 22233331 224688998888766643
No 18
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=96.74 E-value=0.0039 Score=49.32 Aligned_cols=43 Identities=23% Similarity=0.324 Sum_probs=36.5
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L 211 (310)
-+|+|+|||+|.++..+++.. |. .+++-||+||.+.+.-++++
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~---~~----~~v~gvD~s~~~~~~a~~~~ 45 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLF---PG----ARVVGVDISPEMLEIARERA 45 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHH---TT----SEEEEEESSHHHHHHHHHHH
T ss_pred CEEEEEcCcCCHHHHHHHhcC---CC----CEEEEEeCCHHHHHHHHHHH
Confidence 389999999999999988732 22 47999999999999888887
No 19
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.71 E-value=0.011 Score=54.50 Aligned_cols=52 Identities=15% Similarity=0.277 Sum_probs=38.9
Q ss_pred HHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 151 CLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 151 ~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
.+.+.++ +.+.+|+|+|||+|.++..+.+. ..+++.||+|+.+.+.-++++.
T Consensus 36 ~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~---------g~~v~~vD~s~~~l~~a~~~~~ 87 (255)
T PRK11036 36 RLLAELP-PRPLRVLDAGGGEGQTAIKLAEL---------GHQVILCDLSAEMIQRAKQAAE 87 (255)
T ss_pred HHHHhcC-CCCCEEEEeCCCchHHHHHHHHc---------CCEEEEEECCHHHHHHHHHHHH
Confidence 3444444 34569999999999988877542 1379999999999988777664
No 20
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=96.61 E-value=0.0086 Score=56.80 Aligned_cols=43 Identities=28% Similarity=0.484 Sum_probs=37.8
Q ss_pred cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
.-+|+|||||.|.|+.-+++.. -+++-||+.+.|.+..++++.
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~---------~~v~aiEiD~~l~~~L~~~~~ 73 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERA---------ARVTAIEIDRRLAEVLKERFA 73 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhc---------CeEEEEEeCHHHHHHHHHhcc
Confidence 4699999999999999998764 258999999999999999875
No 21
>PHA03411 putative methyltransferase; Provisional
Probab=96.58 E-value=0.017 Score=55.38 Aligned_cols=67 Identities=24% Similarity=0.344 Sum_probs=48.8
Q ss_pred CCCCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhH
Q 021589 125 FGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQ 204 (310)
Q Consensus 125 ~G~~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr 204 (310)
++..|-|+|+..|-..| ++ . . .+ .-+|+|+|||+|.++..++... + ..+++.||+||.+.
T Consensus 42 ~~~~G~FfTP~~i~~~f--~~-------~--~-~~-~grVLDLGcGsGilsl~la~r~---~----~~~V~gVDisp~al 101 (279)
T PHA03411 42 LGGSGAFFTPEGLAWDF--TI-------D--A-HC-TGKVLDLCAGIGRLSFCMLHRC---K----PEKIVCVELNPEFA 101 (279)
T ss_pred ccCceeEcCCHHHHHHH--Hh-------c--c-cc-CCeEEEcCCCCCHHHHHHHHhC---C----CCEEEEEECCHHHH
Confidence 66789999999995544 11 1 1 11 2389999999999988776542 1 14799999999999
Q ss_pred HHHHHhc
Q 021589 205 KLQHHNL 211 (310)
Q Consensus 205 ~~Q~e~L 211 (310)
+.-++++
T Consensus 102 ~~Ar~n~ 108 (279)
T PHA03411 102 RIGKRLL 108 (279)
T ss_pred HHHHHhC
Confidence 8877765
No 22
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=96.53 E-value=0.0089 Score=53.05 Aligned_cols=62 Identities=16% Similarity=0.222 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 144 MVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 144 ~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
.++..+.+.+.......+.+|+|+|||+|.++..+++.. | ..+++.+|+|+.+.+..++++.
T Consensus 18 ~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~---~----~~~~~~~D~~~~~~~~~~~~~~ 79 (240)
T TIGR02072 18 EMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRF---P----QAEFIALDISAGMLAQAKTKLS 79 (240)
T ss_pred HHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhC---C----CCcEEEEeChHHHHHHHHHhcC
Confidence 344555555544332344689999999999988776643 2 2469999999999887777664
No 23
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=96.47 E-value=0.029 Score=50.51 Aligned_cols=55 Identities=11% Similarity=0.149 Sum_probs=40.3
Q ss_pred HHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 152 LWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 152 ~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
+.+.++....-+|+|+|||+|.++..+.+... | ..+++-||+||.+.+.-++++.
T Consensus 37 ~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~--~----~~~v~gvD~s~~~~~~a~~~~~ 91 (231)
T TIGR02752 37 TMKRMNVQAGTSALDVCCGTADWSIALAEAVG--P----EGHVIGLDFSENMLSVGRQKVK 91 (231)
T ss_pred HHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhC--C----CCEEEEEECCHHHHHHHHHHHH
Confidence 33444444446999999999999988876542 1 2479999999999887776664
No 24
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=96.44 E-value=0.0057 Score=57.16 Aligned_cols=44 Identities=30% Similarity=0.523 Sum_probs=38.5
Q ss_pred CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
....|+|+|||.|.|+..++... -++++||+.+.+.+.-++++.
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~---------~~v~~vE~d~~~~~~L~~~~~ 73 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRG---------KRVIAVEIDPDLAKHLKERFA 73 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHS---------SEEEEEESSHHHHHHHHHHCT
T ss_pred CCCEEEEeCCCCccchhhHhccc---------CcceeecCcHhHHHHHHHHhh
Confidence 44699999999999999998875 269999999999998888775
No 25
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=96.40 E-value=0.0097 Score=55.99 Aligned_cols=67 Identities=24% Similarity=0.389 Sum_probs=46.7
Q ss_pred CCCCCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhh
Q 021589 124 VFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTL 203 (310)
Q Consensus 124 ~~G~~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~L 203 (310)
.+|. .|++.+.+. .++++ .++....-+|+|+|||+|.++..+++.. + +++.||+++.+
T Consensus 19 ~~gq--~fl~~~~i~--------~~i~~---~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~------~v~avE~d~~~ 76 (272)
T PRK00274 19 SLGQ--NFLIDENIL--------DKIVD---AAGPQPGDNVLEIGPGLGALTEPLLERA---A------KVTAVEIDRDL 76 (272)
T ss_pred ccCc--CcCCCHHHH--------HHHHH---hcCCCCcCeEEEeCCCccHHHHHHHHhC---C------cEEEEECCHHH
Confidence 3454 488887653 22222 2232233589999999999999987752 1 58999999999
Q ss_pred HHHHHHhcc
Q 021589 204 QKLQHHNLK 212 (310)
Q Consensus 204 r~~Q~e~L~ 212 (310)
.+.-++++.
T Consensus 77 ~~~~~~~~~ 85 (272)
T PRK00274 77 APILAETFA 85 (272)
T ss_pred HHHHHHhhc
Confidence 998877663
No 26
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=96.39 E-value=0.029 Score=50.39 Aligned_cols=45 Identities=16% Similarity=0.296 Sum_probs=36.2
Q ss_pred CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (310)
Q Consensus 160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~ 213 (310)
...+|+|+|||+|.++..+... ..+++-||+||.+.+..++++..
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~---------~~~v~gvD~s~~~i~~a~~~~~~ 99 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKR---------GAIVKAVDISEQMVQMARNRAQG 99 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHC---------CCEEEEEECCHHHHHHHHHHHHh
Confidence 3469999999999988877542 13689999999999988887753
No 27
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=96.38 E-value=0.054 Score=51.46 Aligned_cols=70 Identities=13% Similarity=0.269 Sum_probs=46.8
Q ss_pred CCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHH
Q 021589 129 GDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH 208 (310)
Q Consensus 129 GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~ 208 (310)
|-|+.-|+...+.-+.+..++ . ...+.+|+|+|||+|.++..+.+.. |+ .+++.||+|+...+.-+
T Consensus 97 ~vlipr~~te~lv~~~l~~~~-----~--~~~~~~vLDlG~GsG~i~~~la~~~---~~----~~v~avDis~~al~~A~ 162 (284)
T TIGR03533 97 RVLIPRSPIAELIEDGFAPWL-----E--PEPVKRILDLCTGSGCIAIACAYAF---PE----AEVDAVDISPDALAVAE 162 (284)
T ss_pred CCccCCCchHHHHHHHHHHHh-----c--cCCCCEEEEEeCchhHHHHHHHHHC---CC----CEEEEEECCHHHHHHHH
Confidence 556666666444444333222 1 1123589999999999999887643 22 47999999999988777
Q ss_pred Hhcc
Q 021589 209 HNLK 212 (310)
Q Consensus 209 e~L~ 212 (310)
+++.
T Consensus 163 ~n~~ 166 (284)
T TIGR03533 163 INIE 166 (284)
T ss_pred HHHH
Confidence 7664
No 28
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=96.36 E-value=0.01 Score=55.01 Aligned_cols=48 Identities=29% Similarity=0.478 Sum_probs=37.5
Q ss_pred cCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 156 ~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
.+....-.|+|+|||+|.++..+++.. + .++.||+++.+.+.-++++.
T Consensus 25 ~~~~~~~~VLEiG~G~G~lt~~L~~~~---~------~v~~iE~d~~~~~~l~~~~~ 72 (253)
T TIGR00755 25 ANVLEGDVVLEIGPGLGALTEPLLKRA---K------KVTAIEIDPRLAEILRKLLS 72 (253)
T ss_pred cCCCCcCEEEEeCCCCCHHHHHHHHhC---C------cEEEEECCHHHHHHHHHHhC
Confidence 333334589999999999999987653 1 48999999999988777664
No 29
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=96.32 E-value=0.0068 Score=47.79 Aligned_cols=45 Identities=24% Similarity=0.358 Sum_probs=32.8
Q ss_pred EEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 164 LVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 164 IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
|+|+|||+|+.+..+++.+..-| ..+++.||+|+.+-+.-+++..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~----~~~~~gvD~s~~~l~~~~~~~~ 45 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGP----SSRVIGVDISPEMLELAKKRFS 45 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS---------SEEEEEES-HHHHHHHHHHSH
T ss_pred CEEeecCCcHHHHHHHHHhhhcc----cceEEEEECCHHHHHHHHHhch
Confidence 79999999999999998762212 2589999999999988777664
No 30
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=96.28 E-value=0.014 Score=46.53 Aligned_cols=51 Identities=20% Similarity=0.292 Sum_probs=38.2
Q ss_pred HcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 155 QMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 155 ~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
.++.+..-+|+|+|||.|.++..+++.. |. .+++.||.|+.+.+.-++++.
T Consensus 14 ~~~~~~~~~vldlG~G~G~~~~~l~~~~---~~----~~v~~vD~s~~~~~~a~~~~~ 64 (124)
T TIGR02469 14 KLRLRPGDVLWDIGAGSGSITIEAARLV---PN----GRVYAIERNPEALRLIERNAR 64 (124)
T ss_pred HcCCCCCCEEEEeCCCCCHHHHHHHHHC---CC----ceEEEEcCCHHHHHHHHHHHH
Confidence 3444333599999999999999987653 32 479999999999887665553
No 31
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.27 E-value=0.055 Score=52.08 Aligned_cols=71 Identities=15% Similarity=0.360 Sum_probs=46.8
Q ss_pred CCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHH
Q 021589 129 GDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH 208 (310)
Q Consensus 129 GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~ 208 (310)
+-|+.-|+...+.-+.+..++ . ...+.+|+|+|||+|.++..+... .|. .+++.+|+|+...+.-+
T Consensus 109 ~vlipr~~te~lv~~~l~~~~----~---~~~~~~VLDlG~GsG~iai~la~~---~p~----~~V~avDis~~al~~A~ 174 (307)
T PRK11805 109 RVLVPRSPIAELIEDGFAPWL----E---DPPVTRILDLCTGSGCIAIACAYA---FPD----AEVDAVDISPDALAVAE 174 (307)
T ss_pred CCcCCCCchHHHHHHHHHHHh----c---cCCCCEEEEEechhhHHHHHHHHH---CCC----CEEEEEeCCHHHHHHHH
Confidence 446666666444433332222 1 111248999999999999887654 232 57999999999998877
Q ss_pred Hhccc
Q 021589 209 HNLKC 213 (310)
Q Consensus 209 e~L~~ 213 (310)
+++..
T Consensus 175 ~n~~~ 179 (307)
T PRK11805 175 INIER 179 (307)
T ss_pred HHHHH
Confidence 77653
No 32
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=96.26 E-value=0.034 Score=51.31 Aligned_cols=54 Identities=24% Similarity=0.356 Sum_probs=39.4
Q ss_pred HHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHH
Q 021589 149 AMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH 209 (310)
Q Consensus 149 ~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e 209 (310)
+..+.+.++....-+|+|+|||+|.++..+.+. .|. .+++-||+||.+.+.-++
T Consensus 18 ~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~---~p~----~~v~gvD~s~~~~~~a~~ 71 (255)
T PRK14103 18 FYDLLARVGAERARRVVDLGCGPGNLTRYLARR---WPG----AVIEALDSSPEMVAAARE 71 (255)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHH---CCC----CEEEEEECCHHHHHHHHh
Confidence 344455555445569999999999999877654 232 479999999999876554
No 33
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.20 E-value=0.043 Score=50.55 Aligned_cols=46 Identities=22% Similarity=0.423 Sum_probs=36.8
Q ss_pred CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
...+|+|+|||+|.++..++..+ | ..+++.+|+|+...+.-++++.
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~---~----~~~v~~iDis~~~l~~a~~n~~ 153 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKER---P----DAEVTAVDISPEALAVARRNAK 153 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHC---C----CCEEEEEECCHHHHHHHHHHHH
Confidence 34689999999999998887654 2 2579999999998877776654
No 34
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=96.15 E-value=0.00068 Score=53.05 Aligned_cols=42 Identities=24% Similarity=0.382 Sum_probs=31.9
Q ss_pred EEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589 165 VELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (310)
Q Consensus 165 vElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~ 213 (310)
+|+|||+|.++..++..+ | ..+|+.+|+||.+.+.-++++..
T Consensus 1 LdiGcG~G~~~~~l~~~~---~----~~~~~~~D~s~~~l~~a~~~~~~ 42 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL---P----DARYTGVDISPSMLERARERLAE 42 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--------EEEEEEEESSSSTTSTTCCCHHH
T ss_pred CEeCccChHHHHHHHHhC---C----CCEEEEEECCHHHHHHHHHHhhh
Confidence 699999999999998875 2 25899999999998655555543
No 35
>PRK08317 hypothetical protein; Provisional
Probab=96.15 E-value=0.085 Score=46.56 Aligned_cols=51 Identities=16% Similarity=0.212 Sum_probs=38.4
Q ss_pred HHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHh
Q 021589 154 EQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN 210 (310)
Q Consensus 154 ~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~ 210 (310)
+.++.....+|+|+|||+|.++..+.+... | ..+++.||+|+.+.+..+++
T Consensus 13 ~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~--~----~~~v~~~d~~~~~~~~a~~~ 63 (241)
T PRK08317 13 ELLAVQPGDRVLDVGCGPGNDARELARRVG--P----EGRVVGIDRSEAMLALAKER 63 (241)
T ss_pred HHcCCCCCCEEEEeCCCCCHHHHHHHHhcC--C----CcEEEEEeCCHHHHHHHHHH
Confidence 334444456999999999999998876541 2 24799999999988776665
No 36
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.01 E-value=0.033 Score=50.08 Aligned_cols=46 Identities=20% Similarity=0.255 Sum_probs=36.0
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~ 213 (310)
-+|+|+|||+|.++.-+.+.+.. .-+++-||++|.+.+.-++++..
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~~------~g~V~~iD~~~~~~~~a~~~l~~ 119 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIER------RGKVYTVEIVKELAIYAAQNIER 119 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcCC------CCEEEEEeCCHHHHHHHHHHHHH
Confidence 58999999999999777654421 13699999999999877777753
No 37
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=95.98 E-value=0.23 Score=44.38 Aligned_cols=65 Identities=26% Similarity=0.296 Sum_probs=43.3
Q ss_pred CCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHH
Q 021589 129 GDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH 208 (310)
Q Consensus 129 GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~ 208 (310)
|.++++|++....-+ .+......+|+|+|||+|.++. +|..+. . +++.||+++.+.+.-+
T Consensus 58 ~~~~~~p~~~~~l~~-----------~l~~~~~~~VLeiG~GsG~~t~-~la~~~--~------~v~~vd~~~~~~~~a~ 117 (212)
T PRK00312 58 GQTISQPYMVARMTE-----------LLELKPGDRVLEIGTGSGYQAA-VLAHLV--R------RVFSVERIKTLQWEAK 117 (212)
T ss_pred CCeeCcHHHHHHHHH-----------hcCCCCCCEEEEECCCccHHHH-HHHHHh--C------EEEEEeCCHHHHHHHH
Confidence 566777766422211 1233334699999999999987 443321 1 5899999999988887
Q ss_pred Hhccc
Q 021589 209 HNLKC 213 (310)
Q Consensus 209 e~L~~ 213 (310)
+++..
T Consensus 118 ~~~~~ 122 (212)
T PRK00312 118 RRLKQ 122 (212)
T ss_pred HHHHH
Confidence 77754
No 38
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=95.92 E-value=0.022 Score=50.06 Aligned_cols=49 Identities=18% Similarity=0.337 Sum_probs=37.0
Q ss_pred CCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 157 g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
+.+..-+|+|+|||+|.++..+++.. |. .+++.||+||.+.+.-++++.
T Consensus 28 ~~~~~~~vLDiG~G~G~~~~~la~~~---~~----~~v~~vD~s~~~~~~a~~n~~ 76 (187)
T PRK08287 28 ELHRAKHLIDVGAGTGSVSIEAALQF---PS----LQVTAIERNPDALRLIKENRQ 76 (187)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHC---CC----CEEEEEECCHHHHHHHHHHHH
Confidence 33344589999999999999887642 32 479999999998776665543
No 39
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=95.87 E-value=0.023 Score=54.55 Aligned_cols=44 Identities=25% Similarity=0.440 Sum_probs=36.6
Q ss_pred cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (310)
Q Consensus 161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~ 213 (310)
.-.|+|+|||.|.|+..++... -+++.||+++.+.+.-++++..
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll~~~---------~~V~avEiD~~li~~l~~~~~~ 80 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLLQLA---------KKVIAIEIDPRMVAELKKRFQN 80 (294)
T ss_pred cCEEEEecCchHHHHHHHHHhC---------CcEEEEECCHHHHHHHHHHHHh
Confidence 3589999999999998887641 2589999999999988887753
No 40
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=95.84 E-value=0.019 Score=51.56 Aligned_cols=64 Identities=14% Similarity=0.225 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589 138 SQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (310)
Q Consensus 138 s~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~ 213 (310)
-|.+|.+...|.. + ++. ..-.|+|+|||+|.++..+... +|. .+++-||+|+.+.+..++++..
T Consensus 23 ~~~~~~~~~~~~~-~---~~~-~~~~VLDiGcGtG~~~~~la~~---~p~----~~v~gVD~s~~~i~~a~~~~~~ 86 (202)
T PRK00121 23 WPRLSPAPLDWAE-L---FGN-DAPIHLEIGFGKGEFLVEMAKA---NPD----INFIGIEVHEPGVGKALKKIEE 86 (202)
T ss_pred chhhcCCCCCHHH-H---cCC-CCCeEEEEccCCCHHHHHHHHH---CCC----ccEEEEEechHHHHHHHHHHHH
Confidence 4566666555542 1 122 2358999999999999988654 232 4799999999999988876643
No 41
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=95.76 E-value=0.14 Score=48.36 Aligned_cols=44 Identities=23% Similarity=0.394 Sum_probs=35.9
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
.+|+|+|||+|.++..+.... |. .+++.||+|+...+..++++.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~---~~----~~v~avDis~~al~~a~~n~~ 159 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEF---PN----AEVIAVDISPDALAVAEENAE 159 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHC---CC----CEEEEEECCHHHHHHHHHHHH
Confidence 489999999999999887653 22 479999999998887777664
No 42
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=95.69 E-value=0.028 Score=54.00 Aligned_cols=54 Identities=22% Similarity=0.346 Sum_probs=43.1
Q ss_pred HHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccc
Q 021589 153 WEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMD 215 (310)
Q Consensus 153 w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~ 215 (310)
.++......-.|+|+|||+|-|+..+|...+ .++-+|+.|.|...-.++..+..
T Consensus 51 ~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k---------kVvA~E~Dprmvael~krv~gtp 104 (315)
T KOG0820|consen 51 VEKADLKPTDVVLEVGPGTGNLTVKLLEAGK---------KVVAVEIDPRMVAELEKRVQGTP 104 (315)
T ss_pred HhccCCCCCCEEEEeCCCCCHHHHHHHHhcC---------eEEEEecCcHHHHHHHHHhcCCC
Confidence 3334443456899999999999999998753 58999999999999998887643
No 43
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=95.68 E-value=0.24 Score=46.51 Aligned_cols=122 Identities=13% Similarity=0.048 Sum_probs=70.0
Q ss_pred CchHHHHHHHHHHHHhcCCcccHHHHHHHhhcCCCCcccC---CCCCCCCCCCeecCCChhHHHHHHHHHHHHHHH-HHc
Q 021589 81 KLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYI---NRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLW-EQM 156 (310)
Q Consensus 81 ~~~~~L~~~i~~~I~~~~GpIsf~dFM~~aLY~P~~GYY~---~~~~~G~~GDFiTSpeIs~~FGe~Ia~~~~~~w-~~~ 156 (310)
.+...|...|..+++.. |--++++|.+....++...=.. ..--+|...-|--+.... . +...+...+ +..
T Consensus 22 ~k~~~l~~rl~~r~~~~-~~~~~~~y~~~l~~~~~~~e~~~l~~~lti~~T~FfR~~~~~~-~----l~~~vlp~l~~~~ 95 (264)
T smart00138 22 YKRTLLQSRLSRRLRVL-GLKDFSEYLELLTSHRGEEELAELLDLMTTNETRFFRESKHFE-A----LEEKVLPLLIASR 95 (264)
T ss_pred chHHHHHHHHHHHHHHc-CCCCHHHHHHHHhcCCcHHHHHHHHHHhhcCCCcccCCcHHHH-H----HHHHHhHHHHHhc
Confidence 35678899999999987 6678999999888775211110 001123333333232222 2 223332222 222
Q ss_pred CCCCcceEEEecCCchHH----HHHHHHHHhcCcCccccceEEEEecChhhHHHHHHh
Q 021589 157 GQPNRVNLVELGPGRGTL----MADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN 210 (310)
Q Consensus 157 g~p~~l~IvElGaG~GtL----a~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~ 210 (310)
....+++|+++|||+|.- |.-+++..... -....+++-+|+|+.+-+.-++.
T Consensus 96 ~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~--~~~~~~I~g~Dis~~~L~~Ar~~ 151 (264)
T smart00138 96 RHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKA--REPDVKILATDIDLKALEKARAG 151 (264)
T ss_pred CCCCCEEEEeccccCChHHHHHHHHHHHHhhhc--CCCCeEEEEEECCHHHHHHHHcC
Confidence 233458999999999974 44443332110 01235899999999988766654
No 44
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=95.65 E-value=0.04 Score=49.95 Aligned_cols=47 Identities=26% Similarity=0.310 Sum_probs=37.2
Q ss_pred cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (310)
Q Consensus 161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~ 213 (310)
.-+|+|+|||+|.++.-+.+.... .-+++-||++|.+.+.-++++..
T Consensus 77 g~~VLdIG~GsG~~t~~la~~~~~------~~~V~~vE~~~~~~~~a~~~l~~ 123 (212)
T PRK13942 77 GMKVLEIGTGSGYHAAVVAEIVGK------SGKVVTIERIPELAEKAKKTLKK 123 (212)
T ss_pred cCEEEEECCcccHHHHHHHHhcCC------CCEEEEEeCCHHHHHHHHHHHHH
Confidence 359999999999999776654321 23799999999999988887754
No 45
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=95.62 E-value=0.054 Score=47.19 Aligned_cols=42 Identities=26% Similarity=0.332 Sum_probs=33.5
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
-+|+|+|||+|.++..+.... + +++.||+||.+.+.-++++.
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~---~------~v~~vD~s~~~~~~a~~~~~ 62 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKG---K------CILTTDINPFAVKELRENAK 62 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcC---C------EEEEEECCHHHHHHHHHHHH
Confidence 479999999999988776531 1 69999999999887666654
No 46
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=95.61 E-value=0.082 Score=44.79 Aligned_cols=50 Identities=20% Similarity=0.377 Sum_probs=37.8
Q ss_pred CCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 021589 159 PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (310)
Q Consensus 159 p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L 211 (310)
....+||++|+|.|.|+.-+...+... ...++++.||.++.+.+.-+++.
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~---~~~~~v~~iD~~~~~~~~a~~~~ 73 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNS---SPNLRVLGIDCNESLVESAQKRA 73 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhc---CCCCeEEEEECCcHHHHHHHHHH
Confidence 355799999999999999887766432 13478999999999866444433
No 47
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=95.60 E-value=0.074 Score=48.05 Aligned_cols=45 Identities=20% Similarity=0.413 Sum_probs=36.3
Q ss_pred cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
+.+|+|+|||+|.++..++... |. .+++.+|+|+.+.+.-++++.
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~---~~----~~v~~iD~~~~~~~~a~~~~~ 132 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKER---PD----ARVTAVDISPEALAVARKNAA 132 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHC---CC----CEEEEEECCHHHHHHHHHHHH
Confidence 3589999999999999887643 32 479999999999987777664
No 48
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=95.56 E-value=0.014 Score=48.55 Aligned_cols=39 Identities=21% Similarity=0.381 Sum_probs=30.7
Q ss_pred CCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHH
Q 021589 159 PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKL 206 (310)
Q Consensus 159 p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~ 206 (310)
+...+|+|+|||.|.++..+- ..+ .+++.||+|+.+.+.
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~----~~~-----~~~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALA----KRG-----FEVTGVDISPQMIEK 59 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHH----HTT-----SEEEEEESSHHHHHH
T ss_pred CCCCEEEEEcCCCCHHHHHHH----HhC-----CEEEEEECCHHHHhh
Confidence 445699999999999877662 222 279999999998877
No 49
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=95.55 E-value=0.082 Score=49.32 Aligned_cols=46 Identities=22% Similarity=0.346 Sum_probs=36.7
Q ss_pred cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (310)
Q Consensus 161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~ 213 (310)
+.+|+|+|||+|.++..+.+.. |. .+++.||+||...+..++++..
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~---~~----~~v~~vDis~~al~~A~~N~~~ 132 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAAL---DG----IELHAADIDPAAVRCARRNLAD 132 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhC---CC----CEEEEEECCHHHHHHHHHHHHH
Confidence 3589999999999998887653 22 4689999999999887777653
No 50
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=95.51 E-value=0.063 Score=52.57 Aligned_cols=45 Identities=22% Similarity=0.319 Sum_probs=36.1
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~ 213 (310)
-+|+|+|||+|.++..+++. .|. .+++.||+|+.+.+.-++++..
T Consensus 198 g~VLDlGCG~G~ls~~la~~---~p~----~~v~~vDis~~Al~~A~~nl~~ 242 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARH---SPK----IRLTLSDVSAAALESSRATLAA 242 (342)
T ss_pred CeEEEeccCcCHHHHHHHHh---CCC----CEEEEEECCHHHHHHHHHHHHH
Confidence 37999999999999887654 332 4799999999988877777654
No 51
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=95.43 E-value=0.071 Score=47.87 Aligned_cols=79 Identities=10% Similarity=0.101 Sum_probs=51.2
Q ss_pred CCCCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhH
Q 021589 125 FGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQ 204 (310)
Q Consensus 125 ~G~~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr 204 (310)
+....++++.....+++-+-+-.-+. .... .+...+|+|+|||+|.++..+.+.. | ..+++.||+|+.+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~d~l~-l~~~--l~~g~~VLDiGcGtG~~al~la~~~---~----~~~V~giD~s~~~l 82 (187)
T PRK00107 13 WNKKYNLTAIRDPEELWERHILDSLA-IAPY--LPGGERVLDVGSGAGFPGIPLAIAR---P----ELKVTLVDSLGKKI 82 (187)
T ss_pred hcccccccccCCHHHHHHHHHHHHHH-HHhh--cCCCCeEEEEcCCCCHHHHHHHHHC---C----CCeEEEEeCcHHHH
Confidence 45667788777776644333322111 1111 1224689999999999988877632 3 24799999999998
Q ss_pred HHHHHhccc
Q 021589 205 KLQHHNLKC 213 (310)
Q Consensus 205 ~~Q~e~L~~ 213 (310)
+.-++++..
T Consensus 83 ~~A~~~~~~ 91 (187)
T PRK00107 83 AFLREVAAE 91 (187)
T ss_pred HHHHHHHHH
Confidence 877766543
No 52
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=95.42 E-value=0.064 Score=48.34 Aligned_cols=48 Identities=21% Similarity=0.270 Sum_probs=37.1
Q ss_pred CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (310)
Q Consensus 160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~ 213 (310)
...+|+|+|||+|.++.-+.+.... ..+++-||++|.+.+.-++++..
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~~~------~g~V~~vD~~~~~~~~A~~~~~~ 124 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIVGR------DGLVVSIERIPELAEKAERRLRK 124 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHhCC------CCEEEEEeCCHHHHHHHHHHHHH
Confidence 3459999999999999866554321 13689999999999988887754
No 53
>PRK14967 putative methyltransferase; Provisional
Probab=95.41 E-value=0.092 Score=47.59 Aligned_cols=43 Identities=16% Similarity=0.164 Sum_probs=33.1
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
-+|+|+|||+|.++..+.+. + ..+++.||+|+.+.+..++++.
T Consensus 38 ~~vLDlGcG~G~~~~~la~~----~----~~~v~~vD~s~~~l~~a~~n~~ 80 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAA----G----AGSVTAVDISRRAVRSARLNAL 80 (223)
T ss_pred CeEEEecCCHHHHHHHHHHc----C----CCeEEEEECCHHHHHHHHHHHH
Confidence 58999999999998766542 1 1368999999998887666554
No 54
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=95.40 E-value=0.14 Score=50.75 Aligned_cols=56 Identities=16% Similarity=0.159 Sum_probs=40.6
Q ss_pred HHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 149 AMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 149 ~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
+..+.+.++....-+|+|+|||+|.++..+.+.. ..+++-||+|+.+.+.-+++..
T Consensus 156 ~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~--------g~~V~giDlS~~~l~~A~~~~~ 211 (383)
T PRK11705 156 LDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY--------GVSVVGVTISAEQQKLAQERCA 211 (383)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC--------CCEEEEEeCCHHHHHHHHHHhc
Confidence 3334455554444599999999999998775432 1478999999999988777664
No 55
>PRK07402 precorrin-6B methylase; Provisional
Probab=95.34 E-value=0.047 Score=48.35 Aligned_cols=45 Identities=18% Similarity=0.177 Sum_probs=35.3
Q ss_pred cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
.-+|+|+|||+|.++..+.+. .|. .+++.||+||.+.+.-++++.
T Consensus 41 ~~~VLDiG~G~G~~~~~la~~---~~~----~~V~~vD~s~~~~~~a~~n~~ 85 (196)
T PRK07402 41 DSVLWDIGAGTGTIPVEAGLL---CPK----GRVIAIERDEEVVNLIRRNCD 85 (196)
T ss_pred CCEEEEeCCCCCHHHHHHHHH---CCC----CEEEEEeCCHHHHHHHHHHHH
Confidence 358999999999999887643 222 479999999999887777664
No 56
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=95.33 E-value=0.079 Score=53.86 Aligned_cols=66 Identities=14% Similarity=0.152 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHHHHHHcCCC-CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHH
Q 021589 138 SQMFGEMVGVWAMCLWEQMGQP-NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKL 206 (310)
Q Consensus 138 s~~FGe~Ia~~~~~~w~~~g~p-~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~ 206 (310)
-..|.++|...+.+..+..... ....|+.+|||||-|..-.+++.+... .+.+++.||.||.....
T Consensus 163 Y~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~---~a~~VyAVEkn~~A~~~ 229 (448)
T PF05185_consen 163 YDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAG---GAVKVYAVEKNPNAVVT 229 (448)
T ss_dssp HHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHC---CESEEEEEESSTHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhC---CCeEEEEEcCCHhHHHH
Confidence 3567888877665554433211 246899999999999998888864321 34689999999965543
No 57
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=95.30 E-value=0.07 Score=48.86 Aligned_cols=42 Identities=12% Similarity=0.173 Sum_probs=32.9
Q ss_pred cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 021589 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (310)
Q Consensus 161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L 211 (310)
.-+|+|+|||+|.++..+... ..+++.+|+||.+.+..+++.
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~---------~~~v~~~D~s~~~l~~a~~~~ 84 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRER---------GSQVTALDLSPPMLAQARQKD 84 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHHc---------CCeEEEEECCHHHHHHHHhhC
Confidence 458999999999988765321 137999999999988777764
No 58
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=95.30 E-value=0.071 Score=47.42 Aligned_cols=46 Identities=15% Similarity=0.252 Sum_probs=36.6
Q ss_pred cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
..+|+|+|||+|.++..++... | ...+++.+|+|+.+.+.-++++.
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~---~---~~~~v~~~D~s~~~~~~a~~~~~ 97 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAV---G---KTGEVVGLDFSEGMLAVGREKLR 97 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHc---C---CCCeEEEEeCCHHHHHHHHHhhc
Confidence 3699999999999999887754 2 13589999999998876666654
No 59
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=95.25 E-value=0.06 Score=47.93 Aligned_cols=53 Identities=11% Similarity=0.154 Sum_probs=40.3
Q ss_pred HcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589 155 QMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (310)
Q Consensus 155 ~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~ 213 (310)
+++....-.|+|+|||+|.++..+++.+.. ..+++.||+|+.+.+.-++++..
T Consensus 35 ~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~------~~~v~avD~~~~~~~~a~~n~~~ 87 (198)
T PRK00377 35 KLRLRKGDMILDIGCGTGSVTVEASLLVGE------TGKVYAVDKDEKAINLTRRNAEK 87 (198)
T ss_pred HcCCCCcCEEEEeCCcCCHHHHHHHHHhCC------CCEEEEEECCHHHHHHHHHHHHH
Confidence 345545569999999999999998776421 24799999999998877776643
No 60
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=95.18 E-value=0.046 Score=43.52 Aligned_cols=44 Identities=25% Similarity=0.388 Sum_probs=38.1
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~ 213 (310)
.+|+|+|||+|+++..+++.. ..+++-||++|...+..+.++..
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~--------~~~~~gvdi~~~~~~~a~~~~~~ 45 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG--------AARVTGVDIDPEAVELARRNLPR 45 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC--------TCEEEEEESSHHHHHHHHHHCHH
T ss_pred CEEEEcCcchHHHHHHHHHHC--------CCeEEEEEECHHHHHHHHHHHHH
Confidence 489999999999999988763 24799999999999999988864
No 61
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=95.17 E-value=0.078 Score=49.56 Aligned_cols=46 Identities=15% Similarity=0.274 Sum_probs=35.4
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L 211 (310)
.+|+|+|||+|.++..+.+.+... ....++-||+|+.+.+.-+++.
T Consensus 87 ~~vLDiGcG~G~~~~~l~~~~~~~----~~~~v~giD~s~~~l~~A~~~~ 132 (272)
T PRK11088 87 TALLDIGCGEGYYTHALADALPEI----TTMQLFGLDISKVAIKYAAKRY 132 (272)
T ss_pred CeEEEECCcCCHHHHHHHHhcccc----cCCeEEEECCCHHHHHHHHHhC
Confidence 579999999999999987764211 1146899999999988776654
No 62
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=95.15 E-value=0.043 Score=48.86 Aligned_cols=44 Identities=14% Similarity=0.238 Sum_probs=34.7
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
-.|+|+|||+|.++..+++. +|+ ..++-||+|+.+.+.-++++.
T Consensus 18 ~~ilDiGcG~G~~~~~la~~---~p~----~~v~gvD~~~~~l~~a~~~~~ 61 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQ---NPD----KNFLGIEIHTPIVLAANNKAN 61 (194)
T ss_pred ceEEEeCCCccHHHHHHHHh---CCC----CCEEEEEeeHHHHHHHHHHHH
Confidence 48999999999999888754 454 479999999998776555543
No 63
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=95.12 E-value=0.093 Score=53.98 Aligned_cols=45 Identities=24% Similarity=0.330 Sum_probs=36.4
Q ss_pred cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
+.+|+|+|||+|.++..++..+ |. .+++.||+||...+..++++.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~---p~----~~v~avDis~~al~~A~~N~~ 183 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCEL---PN----ANVIATDISLDAIEVAKSNAI 183 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHC---CC----CeEEEEECCHHHHHHHHHHHH
Confidence 3589999999999999887643 32 479999999998888777664
No 64
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=95.11 E-value=0.082 Score=51.02 Aligned_cols=71 Identities=23% Similarity=0.353 Sum_probs=53.0
Q ss_pred CCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHH
Q 021589 128 EGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ 207 (310)
Q Consensus 128 ~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q 207 (310)
.|=||-=||. |-+..++++...+.....+..|+|+|+|+|.++..+|..+. +.+++-||.|++-.+.-
T Consensus 121 pgVlIPRpET-----EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-------~~~v~AiD~S~~Ai~La 188 (328)
T KOG2904|consen 121 PGVLIPRPET-----EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-------QCTVTAIDVSKAAIKLA 188 (328)
T ss_pred CCeeecCccH-----HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-------CceEEEEeccHHHHHHH
Confidence 5777777775 44556666666665555556899999999999999988763 25899999999876654
Q ss_pred HHh
Q 021589 208 HHN 210 (310)
Q Consensus 208 ~e~ 210 (310)
.++
T Consensus 189 ~eN 191 (328)
T KOG2904|consen 189 KEN 191 (328)
T ss_pred HHH
Confidence 443
No 65
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=95.02 E-value=0.092 Score=52.31 Aligned_cols=45 Identities=24% Similarity=0.327 Sum_probs=36.3
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~ 213 (310)
-+|+|+|||+|.++..+.+. .|+ .+++.||+|+...+..++++..
T Consensus 230 ~~VLDLGCGtGvi~i~la~~---~P~----~~V~~vD~S~~Av~~A~~N~~~ 274 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDK---NPQ----AKVVFVDESPMAVASSRLNVET 274 (378)
T ss_pred CeEEEEeccccHHHHHHHHh---CCC----CEEEEEECCHHHHHHHHHHHHH
Confidence 48999999999998876553 343 4799999999998888877753
No 66
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=95.02 E-value=0.055 Score=55.41 Aligned_cols=83 Identities=22% Similarity=0.313 Sum_probs=56.0
Q ss_pred CCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCc-cccceEEEEecChhhHH
Q 021589 127 AEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNF-TESLHIHLVECSPTLQK 205 (310)
Q Consensus 127 ~~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~-~~~l~y~iVE~SP~Lr~ 205 (310)
+.|-|+|++.|.....+++.... .........+|+|.|||+|.|...+++.+...... ......+.+|+++.+..
T Consensus 2 ~~GqfyTP~~ia~~mv~~~~~~~----~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~ 77 (524)
T TIGR02987 2 AYGTFFTPPDIAKAMVANLVNEI----GKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLK 77 (524)
T ss_pred CCcccCCcHHHHHHHHHHHhhhc----chhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHH
Confidence 36899999999766555433221 10011134699999999999999999987421111 11367899999999988
Q ss_pred HHHHhccc
Q 021589 206 LQHHNLKC 213 (310)
Q Consensus 206 ~Q~e~L~~ 213 (310)
.-+.+|..
T Consensus 78 ~a~~~l~~ 85 (524)
T TIGR02987 78 RAKKLLGE 85 (524)
T ss_pred HHHHHHhh
Confidence 77776643
No 67
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=94.97 E-value=0.096 Score=51.01 Aligned_cols=42 Identities=19% Similarity=0.278 Sum_probs=32.4
Q ss_pred cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 021589 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (310)
Q Consensus 161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L 211 (310)
..+|+|+|||+|.++..+.+. ..+++-||.|+.+.+.-+++.
T Consensus 132 g~~ILDIGCG~G~~s~~La~~---------g~~V~GID~s~~~i~~Ar~~~ 173 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLARM---------GATVTGVDAVDKNVKIARLHA 173 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHHc---------CCEEEEEeCCHHHHHHHHHHH
Confidence 358999999999988765431 137999999999988766543
No 68
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=94.84 E-value=0.16 Score=48.31 Aligned_cols=43 Identities=23% Similarity=0.457 Sum_probs=34.5
Q ss_pred eEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 163 ~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
+|+|+|+|+|.+|..+.... |+ .+++-+|+||.-.+.-+++..
T Consensus 113 ~ilDlGTGSG~iai~la~~~---~~----~~V~a~Dis~~Al~~A~~Na~ 155 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG---PD----AEVIAVDISPDALALARENAE 155 (280)
T ss_pred cEEEecCChHHHHHHHHhhC---cC----CeEEEEECCHHHHHHHHHHHH
Confidence 89999999999999887654 33 479999999987776665554
No 69
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=94.77 E-value=0.086 Score=46.84 Aligned_cols=44 Identities=16% Similarity=0.205 Sum_probs=33.4
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
.+|+|+|||+|.++..+... .|. .+++.||.|+.+.+.-++.+.
T Consensus 44 ~~vLDiGcGtG~~s~~la~~---~~~----~~V~~iD~s~~~~~~a~~~~~ 87 (181)
T TIGR00138 44 KKVIDIGSGAGFPGIPLAIA---RPE----LKLTLLESNHKKVAFLREVKA 87 (181)
T ss_pred CeEEEecCCCCccHHHHHHH---CCC----CeEEEEeCcHHHHHHHHHHHH
Confidence 59999999999988877532 222 469999999998876665553
No 70
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=94.74 E-value=0.066 Score=40.21 Aligned_cols=41 Identities=20% Similarity=0.342 Sum_probs=31.5
Q ss_pred EEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589 165 VELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (310)
Q Consensus 165 vElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~ 213 (310)
+|+|||+|..+.-+... ...+++-+|+|+.+.+.-++++..
T Consensus 1 LdiG~G~G~~~~~l~~~--------~~~~v~~~D~~~~~~~~~~~~~~~ 41 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--------GGASVTGIDISEEMLEQARKRLKN 41 (95)
T ss_dssp EEET-TTSHHHHHHHHT--------TTCEEEEEES-HHHHHHHHHHTTT
T ss_pred CEecCcCCHHHHHHHhc--------cCCEEEEEeCCHHHHHHHHhcccc
Confidence 69999999999988765 125799999999988877776653
No 71
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=94.72 E-value=0.12 Score=45.45 Aligned_cols=51 Identities=16% Similarity=0.288 Sum_probs=38.1
Q ss_pred cCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 156 ~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
+......+|+|+|||+|.++..+++.. |. ..+++.+|+++.+.+.-++++.
T Consensus 35 ~~~~~~~~vldiG~G~G~~~~~~~~~~---~~---~~~~~~iD~~~~~~~~~~~~~~ 85 (223)
T TIGR01934 35 IGVFKGQKVLDVACGTGDLAIELAKSA---PD---RGKVTGVDFSSEMLEVAKKKSE 85 (223)
T ss_pred hccCCCCeEEEeCCCCChhHHHHHHhc---CC---CceEEEEECCHHHHHHHHHHhc
Confidence 333345799999999999998887654 22 1479999999998876666553
No 72
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=94.66 E-value=0.076 Score=47.42 Aligned_cols=43 Identities=14% Similarity=0.088 Sum_probs=33.5
Q ss_pred cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
+.+|+|+|||+|.++.-+.+. ..+++.||+|+.+.+.-+++..
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~---------g~~V~gvD~S~~~i~~a~~~~~ 73 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAAN---------GFDVTAWDKNPMSIANLERIKA 73 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHC---------CCEEEEEeCCHHHHHHHHHHHH
Confidence 358999999999998776542 1379999999998877666553
No 73
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=94.59 E-value=0.054 Score=45.28 Aligned_cols=39 Identities=28% Similarity=0.531 Sum_probs=30.9
Q ss_pred HHHH-HHHHHHHHHHHHcCCC-CcceEEEecCCchHHHHHH
Q 021589 140 MFGE-MVGVWAMCLWEQMGQP-NRVNLVELGPGRGTLMADL 178 (310)
Q Consensus 140 ~FGe-~Ia~~~~~~w~~~g~p-~~l~IvElGaG~GtLa~DI 178 (310)
+|=. .||.+++.+|+.+..+ .+...|+||||+|-|..=+
T Consensus 36 VfEDlaIAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL 76 (112)
T PF07757_consen 36 VFEDLAIAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYIL 76 (112)
T ss_pred HHHHHHHHHHHHHHHhcccCCCCCCceEEccCCchHHHHHH
Confidence 4433 4999999999988655 5678999999999987643
No 74
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.57 E-value=0.45 Score=43.96 Aligned_cols=71 Identities=20% Similarity=0.270 Sum_probs=49.9
Q ss_pred CCCCCCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChh
Q 021589 123 DVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPT 202 (310)
Q Consensus 123 ~~~G~~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~ 202 (310)
-++| .|-++..|.+- |+.+ +.+.....-.|+|||+|+|..++ ||..+-. +++-||.-+.
T Consensus 47 lpi~-~gqtis~P~~v-------A~m~----~~L~~~~g~~VLEIGtGsGY~aA-vla~l~~--------~V~siEr~~~ 105 (209)
T COG2518 47 LPIG-CGQTISAPHMV-------ARML----QLLELKPGDRVLEIGTGSGYQAA-VLARLVG--------RVVSIERIEE 105 (209)
T ss_pred ccCC-CCceecCcHHH-------HHHH----HHhCCCCCCeEEEECCCchHHHH-HHHHHhC--------eEEEEEEcHH
Confidence 4566 77888888653 2222 22233233599999999999886 5554422 6899999999
Q ss_pred hHHHHHHhcccc
Q 021589 203 LQKLQHHNLKCM 214 (310)
Q Consensus 203 Lr~~Q~e~L~~~ 214 (310)
|.+.-+++|...
T Consensus 106 L~~~A~~~L~~l 117 (209)
T COG2518 106 LAEQARRNLETL 117 (209)
T ss_pred HHHHHHHHHHHc
Confidence 999999988653
No 75
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=94.52 E-value=0.15 Score=45.51 Aligned_cols=62 Identities=13% Similarity=0.063 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHcC-CCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 142 GEMVGVWAMCLWEQMG-QPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 142 Ge~Ia~~~~~~w~~~g-~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
......|+.+.+...+ .....+|+|+|||+|.++..+.+. . .+++.+|.|+.+.+.-++++.
T Consensus 26 ~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~---~------~~v~~iD~s~~~~~~a~~~~~ 88 (224)
T TIGR01983 26 NPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARL---G------ANVTGIDASEENIEVAKLHAK 88 (224)
T ss_pred hHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhc---C------CeEEEEeCCHHHHHHHHHHHH
Confidence 3334566665555432 124569999999999988876542 1 249999999998776655554
No 76
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=94.38 E-value=0.072 Score=49.87 Aligned_cols=88 Identities=20% Similarity=0.258 Sum_probs=59.5
Q ss_pred HHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhhhhccc
Q 021589 152 LWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSL 231 (310)
Q Consensus 152 ~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~ 231 (310)
+..+.+.-.+-+|++||||.|....-+.+.+ |+ -.+.-||.||.|.+.-+++|....- .
T Consensus 22 Lla~Vp~~~~~~v~DLGCGpGnsTelL~~Rw---P~----A~i~GiDsS~~Mla~Aa~rlp~~~f--------------~ 80 (257)
T COG4106 22 LLARVPLERPRRVVDLGCGPGNSTELLARRW---PD----AVITGIDSSPAMLAKAAQRLPDATF--------------E 80 (257)
T ss_pred HHhhCCccccceeeecCCCCCHHHHHHHHhC---CC----CeEeeccCCHHHHHHHHHhCCCCce--------------e
Confidence 3344444456799999999999998887654 53 2688999999999988888864110 0
Q ss_pred CCCCeEEecccccCCCCCCEEEEEeccccccccee
Q 021589 232 AGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQ 266 (310)
Q Consensus 232 ~~~~v~W~~sleelp~~~~~vIiANE~fDALPvh~ 266 (310)
.++--.|. |.....+|+||-+|-=||-|.
T Consensus 81 ~aDl~~w~------p~~~~dllfaNAvlqWlpdH~ 109 (257)
T COG4106 81 EADLRTWK------PEQPTDLLFANAVLQWLPDHP 109 (257)
T ss_pred cccHhhcC------CCCccchhhhhhhhhhccccH
Confidence 11222353 222235889999888888764
No 77
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=94.37 E-value=0.31 Score=43.92 Aligned_cols=44 Identities=14% Similarity=0.178 Sum_probs=33.6
Q ss_pred CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
....|+|+|||+|.++..+.+.. .+++.+|+|+.+.+.-++++.
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~---------~~v~~iD~s~~~~~~a~~~~~ 91 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLG---------ADVTGIDASEENIEVARLHAL 91 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcC---------CeEEEEcCCHHHHHHHHHHHH
Confidence 34689999999999987665421 369999999999776665543
No 78
>PRK05785 hypothetical protein; Provisional
Probab=94.37 E-value=0.13 Score=47.11 Aligned_cols=42 Identities=10% Similarity=0.218 Sum_probs=33.3
Q ss_pred cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHh
Q 021589 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN 210 (310)
Q Consensus 161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~ 210 (310)
+-+|+|+|||+|.++..+.+.. ..+++-||+|+.|.+.-+++
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~--------~~~v~gvD~S~~Ml~~a~~~ 93 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF--------KYYVVALDYAENMLKMNLVA 93 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc--------CCEEEEECCCHHHHHHHHhc
Confidence 3599999999999988765542 13799999999998876653
No 79
>PRK00811 spermidine synthase; Provisional
Probab=94.35 E-value=0.13 Score=48.82 Aligned_cols=74 Identities=20% Similarity=0.331 Sum_probs=50.9
Q ss_pred CCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHH
Q 021589 128 EGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ 207 (310)
Q Consensus 128 ~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q 207 (310)
.|..-++-.---.|=|+++.-.+. -.+.+-+|+++|+|.|.+++.+|+. +. ..++++||++|.+.+.-
T Consensus 49 Dg~~q~~~~de~~Y~e~l~h~~~~-----~~~~p~~VL~iG~G~G~~~~~~l~~----~~---~~~V~~VEid~~vv~~a 116 (283)
T PRK00811 49 DGCVMTTERDEFIYHEMMTHVPLF-----AHPNPKRVLIIGGGDGGTLREVLKH----PS---VEKITLVEIDERVVEVC 116 (283)
T ss_pred CCeeeecCcchhhHHHHhhhHHHh-----hCCCCCEEEEEecCchHHHHHHHcC----CC---CCEEEEEeCCHHHHHHH
Confidence 356655533334566666543322 1234569999999999999998753 21 13799999999999988
Q ss_pred HHhccc
Q 021589 208 HHNLKC 213 (310)
Q Consensus 208 ~e~L~~ 213 (310)
++.+..
T Consensus 117 ~~~~~~ 122 (283)
T PRK00811 117 RKYLPE 122 (283)
T ss_pred HHHhHH
Confidence 887753
No 80
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.31 E-value=0.35 Score=44.22 Aligned_cols=44 Identities=18% Similarity=0.293 Sum_probs=35.3
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~ 213 (310)
-.|+++|||+|.|+...+- +.+-+++-||+.|...+.-+++..+
T Consensus 47 ~~V~DlG~GTG~La~ga~~--------lGa~~V~~vdiD~~a~ei~r~N~~~ 90 (198)
T COG2263 47 KTVLDLGAGTGILAIGAAL--------LGASRVLAVDIDPEALEIARANAEE 90 (198)
T ss_pred CEEEEcCCCcCHHHHHHHh--------cCCcEEEEEecCHHHHHHHHHHHHh
Confidence 4799999999999987642 2334789999999999988887654
No 81
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=94.25 E-value=0.26 Score=47.23 Aligned_cols=55 Identities=11% Similarity=0.289 Sum_probs=41.4
Q ss_pred cCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 021589 156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (310)
Q Consensus 156 ~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L 211 (310)
++.+...+++++++|+|-+|..||++....+.. ..-+++++|+||.+-+.-++|-
T Consensus 96 L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~-~~~~V~v~Dinp~mL~vgkqRa 150 (296)
T KOG1540|consen 96 LGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGD-RESKVTVLDINPHMLAVGKQRA 150 (296)
T ss_pred cCCCCCCeEEEecCCcchhHHHHHHhhccccCC-CCceEEEEeCCHHHHHHHHHHH
Confidence 344455899999999999999999998643222 2257999999999977544443
No 82
>PRK04457 spermidine synthase; Provisional
Probab=94.24 E-value=0.086 Score=49.56 Aligned_cols=47 Identities=17% Similarity=0.347 Sum_probs=38.4
Q ss_pred CCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 159 PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 159 p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
+.+-+|+|||+|.|+++..+++.. |+ .+++.||++|.+.+.-++.+.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~---p~----~~v~~VEidp~vi~~A~~~f~ 111 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYL---PD----TRQTAVEINPQVIAVARNHFE 111 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhC---CC----CeEEEEECCHHHHHHHHHHcC
Confidence 344589999999999999887653 43 579999999999998887764
No 83
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=94.23 E-value=0.16 Score=47.56 Aligned_cols=50 Identities=12% Similarity=0.256 Sum_probs=38.0
Q ss_pred HcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 155 QMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 155 ~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
.++.+...+|+|+|||+|.++..+... + ..+++.||+||.+.+..++++.
T Consensus 47 ~l~l~~~~~VLDiGcG~G~~a~~la~~---~-----~~~v~giD~s~~~~~~a~~~~~ 96 (263)
T PTZ00098 47 DIELNENSKVLDIGSGLGGGCKYINEK---Y-----GAHVHGVDICEKMVNIAKLRNS 96 (263)
T ss_pred hCCCCCCCEEEEEcCCCChhhHHHHhh---c-----CCEEEEEECCHHHHHHHHHHcC
Confidence 345455569999999999998776532 1 1479999999999888777654
No 84
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=94.19 E-value=0.086 Score=49.87 Aligned_cols=74 Identities=18% Similarity=0.284 Sum_probs=48.9
Q ss_pred CCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHH
Q 021589 127 AEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKL 206 (310)
Q Consensus 127 ~~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~ 206 (310)
..|-|+|+.+|..+..+++ .....-.|++-.||+|.|...++++++....-....+++-+|+++.....
T Consensus 24 ~~G~~~TP~~i~~l~~~~~-----------~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~l 92 (311)
T PF02384_consen 24 KLGQFYTPREIVDLMVKLL-----------NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVAL 92 (311)
T ss_dssp SCGGC---HHHHHHHHHHH-----------TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHH
T ss_pred ccceeehHHHHHHHHHhhh-----------hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHH
Confidence 4688999999988766655 22233479999999999999999887432111233578999999999887
Q ss_pred HHHhc
Q 021589 207 QHHNL 211 (310)
Q Consensus 207 Q~e~L 211 (310)
-+-+|
T Consensus 93 a~~nl 97 (311)
T PF02384_consen 93 AKLNL 97 (311)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 66544
No 85
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=94.12 E-value=0.16 Score=47.67 Aligned_cols=63 Identities=19% Similarity=0.382 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589 139 QMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (310)
Q Consensus 139 ~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~ 213 (310)
..|-|+++.--+ +..+.+-+|+|+|+|+|.++..+++.. ...++++||+++.+.+.-++.+..
T Consensus 56 ~~y~e~l~~~~l-----~~~~~p~~VL~iG~G~G~~~~~ll~~~-------~~~~v~~veid~~vi~~a~~~~~~ 118 (270)
T TIGR00417 56 FIYHEMIAHVPL-----FTHPNPKHVLVIGGGDGGVLREVLKHK-------SVEKATLVDIDEKVIELSKKFLPS 118 (270)
T ss_pred HHHHHHhhhhHh-----hcCCCCCEEEEEcCCchHHHHHHHhCC-------CcceEEEEeCCHHHHHHHHHHhHh
Confidence 456666654221 123344599999999999998887642 124799999999998877776643
No 86
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=94.09 E-value=0.22 Score=46.59 Aligned_cols=49 Identities=14% Similarity=0.091 Sum_probs=35.5
Q ss_pred CCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 021589 157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (310)
Q Consensus 157 g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L 211 (310)
+.+...+|+|+|||+|.++..+.+... | ..+++-||+|+.|.+.-+++.
T Consensus 70 ~~~~~~~VLDlGcGtG~~~~~la~~~~--~----~~~V~gvD~S~~ml~~A~~r~ 118 (261)
T PLN02233 70 GAKMGDRVLDLCCGSGDLAFLLSEKVG--S----DGKVMGLDFSSEQLAVAASRQ 118 (261)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHhC--C----CCEEEEEECCHHHHHHHHHHh
Confidence 333446999999999998876654321 1 136899999999988766654
No 87
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=94.07 E-value=0.27 Score=46.59 Aligned_cols=43 Identities=19% Similarity=0.302 Sum_probs=33.3
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
-+|+|+|||+|.++..+++. + .-+++.||+||.+.+.-++++.
T Consensus 161 ~~VLDvGcGsG~lai~aa~~----g----~~~V~avDid~~al~~a~~n~~ 203 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKL----G----AAKVVGIDIDPLAVESARKNAE 203 (288)
T ss_pred CEEEEeCCChhHHHHHHHHc----C----CCeEEEEECCHHHHHHHHHHHH
Confidence 59999999999998765431 1 1379999999998887777664
No 88
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=94.03 E-value=0.12 Score=46.08 Aligned_cols=42 Identities=14% Similarity=0.116 Sum_probs=32.6
Q ss_pred cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 021589 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (310)
Q Consensus 161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L 211 (310)
+.+|+|+|||+|.++..+... ..+++.||+||.+.+.-+++.
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~---------g~~V~~iD~s~~~l~~a~~~~ 72 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLA---------GYDVRAWDHNPASIASVLDMK 72 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHC---------CCeEEEEECCHHHHHHHHHHH
Confidence 459999999999999877542 136899999999887655544
No 89
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=93.99 E-value=0.52 Score=47.37 Aligned_cols=44 Identities=11% Similarity=0.130 Sum_probs=33.7
Q ss_pred CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 021589 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (310)
Q Consensus 160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L 211 (310)
...+|+|+|||+|.++..+.... ..+++-||+|+.+.+..+++.
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~--------~~~v~gvDiS~~~l~~A~~~~ 309 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENF--------DVHVVGIDLSVNMISFALERA 309 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhc--------CCEEEEEECCHHHHHHHHHHh
Confidence 34589999999999887665432 147999999999888766654
No 90
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=93.99 E-value=0.61 Score=47.29 Aligned_cols=45 Identities=16% Similarity=0.218 Sum_probs=35.7
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~ 213 (310)
-+|+|+|||+|.++..+... .|. .+++.||+||.+.+.-++++..
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~---~p~----a~VtAVDiS~~ALe~AreNa~~ 297 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALE---RPD----AFVRASDISPPALETARKNAAD 297 (423)
T ss_pred CEEEEEeChhhHHHHHHHHh---CCC----CEEEEEECCHHHHHHHHHHHHH
Confidence 38999999999999877653 232 4789999999999888777653
No 91
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=93.81 E-value=0.27 Score=46.46 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=33.1
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
-+|+|+|||+|.++..+... ..+++-||+|+.+.+..+++..
T Consensus 122 ~~vLDlGcG~G~~~~~la~~---------g~~V~avD~s~~ai~~~~~~~~ 163 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALL---------GFDVTAVDINQQSLENLQEIAE 163 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHC---------CCEEEEEECCHHHHHHHHHHHH
Confidence 48999999999998776542 1479999999998886666553
No 92
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=93.79 E-value=0.12 Score=37.93 Aligned_cols=38 Identities=26% Similarity=0.371 Sum_probs=29.9
Q ss_pred eEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHH
Q 021589 163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH 208 (310)
Q Consensus 163 ~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~ 208 (310)
+|+|+|||.|.++..++. . ...+|+.+|.++......+
T Consensus 1 ~ildig~G~G~~~~~~~~----~----~~~~~~~~d~~~~~~~~~~ 38 (107)
T cd02440 1 RVLDLGCGTGALALALAS----G----PGARVTGVDISPVALELAR 38 (107)
T ss_pred CeEEEcCCccHHHHHHhc----C----CCCEEEEEeCCHHHHHHHH
Confidence 489999999998887765 1 1358999999998876555
No 93
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=93.78 E-value=0.32 Score=47.44 Aligned_cols=49 Identities=24% Similarity=0.225 Sum_probs=38.2
Q ss_pred cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
...|||+|||+|+=.+-+|+++.... ...+|+-||+|...-+.-.++|.
T Consensus 77 ~~~lIELGsG~~~Kt~~LL~aL~~~~---~~~~Y~plDIS~~~L~~a~~~L~ 125 (319)
T TIGR03439 77 GSMLVELGSGNLRKVGILLEALERQK---KSVDYYALDVSRSELQRTLAELP 125 (319)
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcC---CCceEEEEECCHHHHHHHHHhhh
Confidence 35899999999999999999985311 12689999999876666666665
No 94
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=93.75 E-value=0.23 Score=48.27 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=34.7
Q ss_pred cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
..+|+|+|||+|.++..+.+. ..+++-||+|+.+.+.-+++..
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~---------g~~V~gvD~S~~ml~~A~~~~~ 187 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALE---------GAIVSASDISAAMVAEAERRAK 187 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHC---------CCEEEEEECCHHHHHHHHHHHH
Confidence 469999999999999877652 1369999999999887776654
No 95
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=93.62 E-value=0.21 Score=48.75 Aligned_cols=46 Identities=22% Similarity=0.274 Sum_probs=34.8
Q ss_pred cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
.-.|+|+|||+|.++.-+.+..... -.++.||++|.+.+.-++++.
T Consensus 81 g~~VLDIG~GtG~~a~~LA~~~~~~------g~VvgVDis~~~l~~Ar~~l~ 126 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMSRVVGEK------GLVVSVEYSRKICEIAKRNVR 126 (322)
T ss_pred CCEEEEEeCCccHHHHHHHHhcCCC------CEEEEEECCHHHHHHHHHHHH
Confidence 3589999999999998876643211 258899999999887666554
No 96
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=93.51 E-value=0.28 Score=46.08 Aligned_cols=51 Identities=14% Similarity=0.235 Sum_probs=41.5
Q ss_pred cCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589 156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (310)
Q Consensus 156 ~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~ 213 (310)
++.....+|+|+|||||.+|..+.+... ..+++.+|+|+.|-+.-++++..
T Consensus 47 ~~~~~g~~vLDva~GTGd~a~~~~k~~g-------~g~v~~~D~s~~ML~~a~~k~~~ 97 (238)
T COG2226 47 LGIKPGDKVLDVACGTGDMALLLAKSVG-------TGEVVGLDISESMLEVAREKLKK 97 (238)
T ss_pred hCCCCCCEEEEecCCccHHHHHHHHhcC-------CceEEEEECCHHHHHHHHHHhhc
Confidence 3443457999999999999998876542 35899999999999999998864
No 97
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=93.41 E-value=0.42 Score=44.33 Aligned_cols=46 Identities=17% Similarity=0.197 Sum_probs=34.2
Q ss_pred cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
.-+|+|+|||+|.++..+++... + ..+++.||+|+.+.+.-+++..
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g--~----~~~v~gvD~s~~~l~~A~~~~~ 123 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVG--P----TGKVIGVDMTPEMLAKARANAR 123 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhC--C----CCEEEEECCCHHHHHHHHHHHH
Confidence 35999999999998775544321 1 2368999999999888777653
No 98
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=93.36 E-value=0.15 Score=48.14 Aligned_cols=57 Identities=21% Similarity=0.328 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 142 GEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 142 Ge~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
|-+||.|+ ..+..-+|+|+|+|+|.++.-+... .+ ..+++.||+.+.+.++-++++.
T Consensus 33 aiLL~~~~-------~~~~~~~IlDlGaG~G~l~L~la~r---~~----~a~I~~VEiq~~~a~~A~~nv~ 89 (248)
T COG4123 33 AILLAAFA-------PVPKKGRILDLGAGNGALGLLLAQR---TE----KAKIVGVEIQEEAAEMAQRNVA 89 (248)
T ss_pred HHHHHhhc-------ccccCCeEEEecCCcCHHHHHHhcc---CC----CCcEEEEEeCHHHHHHHHHHHH
Confidence 55677776 2233569999999999988755332 12 2579999999999998887764
No 99
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=93.31 E-value=0.52 Score=46.36 Aligned_cols=44 Identities=14% Similarity=0.318 Sum_probs=34.0
Q ss_pred cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 021589 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (310)
Q Consensus 161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L 211 (310)
..+|+|+|||+|.++..+++.. +. .+++.||.|+.+.+.-+++.
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~---~~----~~VtgVD~S~~mL~~A~~k~ 157 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHV---DA----KNVTILDQSPHQLAKAKQKE 157 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHC---CC----CEEEEEECCHHHHHHHHHhh
Confidence 3699999999999988776543 22 47999999999877665543
No 100
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=93.31 E-value=0.31 Score=44.65 Aligned_cols=48 Identities=25% Similarity=0.273 Sum_probs=35.1
Q ss_pred cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcccc
Q 021589 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCM 214 (310)
Q Consensus 161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~ 214 (310)
..+++|+|+|+|.+++=+-.-.... -+++-||+.|.|.+.-+++|...
T Consensus 73 g~~VLeIGtGsGY~aAlla~lvg~~------g~Vv~vE~~~~l~~~A~~~l~~~ 120 (209)
T PF01135_consen 73 GDRVLEIGTGSGYQAALLAHLVGPV------GRVVSVERDPELAERARRNLARL 120 (209)
T ss_dssp T-EEEEES-TTSHHHHHHHHHHSTT------EEEEEEESBHHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCcHHHHHHHHhcCcc------ceEEEECccHHHHHHHHHHHHHh
Confidence 3599999999999998544332211 25889999999999988888753
No 101
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=93.26 E-value=0.39 Score=46.37 Aligned_cols=90 Identities=17% Similarity=0.228 Sum_probs=53.1
Q ss_pred HHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhh
Q 021589 147 VWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEER 226 (310)
Q Consensus 147 ~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~ 226 (310)
+-|++.+++...+. -+|+++|||+|-|+-.-+.-- +-+++-+|+.|.-.+.-+++.....
T Consensus 149 ~lcl~~l~~~~~~g-~~vLDvG~GSGILaiaA~klG--------A~~v~a~DiDp~Av~~a~~N~~~N~----------- 208 (295)
T PF06325_consen 149 RLCLELLEKYVKPG-KRVLDVGCGSGILAIAAAKLG--------AKKVVAIDIDPLAVEAARENAELNG----------- 208 (295)
T ss_dssp HHHHHHHHHHSSTT-SEEEEES-TTSHHHHHHHHTT--------BSEEEEEESSCHHHHHHHHHHHHTT-----------
T ss_pred HHHHHHHHHhccCC-CEEEEeCCcHHHHHHHHHHcC--------CCeEEEecCCHHHHHHHHHHHHHcC-----------
Confidence 34445555555544 399999999999987654321 1368999999998777666654311
Q ss_pred hhcccCCCCeEEecccccCCCCCCEEEEEecccccc
Q 021589 227 TISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDAL 262 (310)
Q Consensus 227 ~~~~~~~~~v~W~~sleelp~~~~~vIiANE~fDAL 262 (310)
....+.... ..+.+.+..-+|+||=+.|-|
T Consensus 209 -----~~~~~~v~~-~~~~~~~~~dlvvANI~~~vL 238 (295)
T PF06325_consen 209 -----VEDRIEVSL-SEDLVEGKFDLVVANILADVL 238 (295)
T ss_dssp ------TTCEEESC-TSCTCCS-EEEEEEES-HHHH
T ss_pred -----CCeeEEEEE-ecccccccCCEEEECCCHHHH
Confidence 112444432 233444434789999665543
No 102
>PRK04266 fibrillarin; Provisional
Probab=93.16 E-value=0.34 Score=44.74 Aligned_cols=50 Identities=14% Similarity=0.113 Sum_probs=35.6
Q ss_pred HHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHh
Q 021589 154 EQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN 210 (310)
Q Consensus 154 ~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~ 210 (310)
+.++.....+|+|+|||+|.++..+.+... .-+++-||+|+.+.+...++
T Consensus 66 ~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-------~g~V~avD~~~~ml~~l~~~ 115 (226)
T PRK04266 66 KNFPIKKGSKVLYLGAASGTTVSHVSDIVE-------EGVVYAVEFAPRPMRELLEV 115 (226)
T ss_pred hhCCCCCCCEEEEEccCCCHHHHHHHHhcC-------CCeEEEEECCHHHHHHHHHH
Confidence 334544446999999999999888765431 13699999999877654443
No 103
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=92.82 E-value=0.47 Score=46.06 Aligned_cols=57 Identities=14% Similarity=0.203 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 147 VWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 147 ~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
.-|++..++...+. -+++++|||+|-||-..+.- .+-+.+-+|+-|.-.+.-+++..
T Consensus 150 ~lcL~~Le~~~~~g-~~vlDvGcGSGILaIAa~kL--------GA~~v~g~DiDp~AV~aa~eNa~ 206 (300)
T COG2264 150 SLCLEALEKLLKKG-KTVLDVGCGSGILAIAAAKL--------GAKKVVGVDIDPQAVEAARENAR 206 (300)
T ss_pred HHHHHHHHHhhcCC-CEEEEecCChhHHHHHHHHc--------CCceEEEecCCHHHHHHHHHHHH
Confidence 34556666665543 59999999999999876542 22368899999877776666554
No 104
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=92.74 E-value=0.14 Score=47.56 Aligned_cols=48 Identities=19% Similarity=0.295 Sum_probs=34.2
Q ss_pred CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (310)
Q Consensus 160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~ 213 (310)
...+|+++|||+|.++..+.+.+. | ..+++.||+|+.|.+.-++++..
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~--~----~~~v~~vD~s~~ML~~a~~k~~~ 94 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVG--P----NGKVVGVDISPGMLEVARKKLKR 94 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---------EEEEEES-HHHHHHHHHHHHH
T ss_pred CCCEEEEeCCChHHHHHHHHHHCC--C----ccEEEEecCCHHHHHHHHHHHHh
Confidence 345999999999999888865432 1 23799999999999988887764
No 105
>PRK14968 putative methyltransferase; Provisional
Probab=92.70 E-value=0.45 Score=40.83 Aligned_cols=42 Identities=19% Similarity=0.261 Sum_probs=33.4
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
-.|+|+|||+|.++..+++. ..+++.+|+||.+.+.-++++.
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~---------~~~v~~~D~s~~~~~~a~~~~~ 66 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKN---------GKKVVGVDINPYAVECAKCNAK 66 (188)
T ss_pred CEEEEEccccCHHHHHHHhh---------cceEEEEECCHHHHHHHHHHHH
Confidence 48999999999998888664 1378999999988776666553
No 106
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=92.59 E-value=0.67 Score=42.60 Aligned_cols=50 Identities=18% Similarity=0.170 Sum_probs=37.3
Q ss_pred HcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589 155 QMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (310)
Q Consensus 155 ~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~ 213 (310)
.++.+.--+++|+|||.|.|...+.... -+++.+|+||.-.++-++|+..
T Consensus 38 aLp~~ry~~alEvGCs~G~lT~~LA~rC---------d~LlavDis~~Al~~Ar~Rl~~ 87 (201)
T PF05401_consen 38 ALPRRRYRRALEVGCSIGVLTERLAPRC---------DRLLAVDISPRALARARERLAG 87 (201)
T ss_dssp HHTTSSEEEEEEE--TTSHHHHHHGGGE---------EEEEEEES-HHHHHHHHHHTTT
T ss_pred hcCccccceeEecCCCccHHHHHHHHhh---------CceEEEeCCHHHHHHHHHhcCC
Confidence 3566655689999999999999874321 2689999999999999999975
No 107
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=92.56 E-value=0.35 Score=44.74 Aligned_cols=43 Identities=16% Similarity=0.268 Sum_probs=32.1
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
-+|+|+|||+|.++..+.+. . .-+++-||+||.+.+.-++++.
T Consensus 121 ~~VLDiGcGsG~l~i~~~~~----g----~~~v~giDis~~~l~~A~~n~~ 163 (250)
T PRK00517 121 KTVLDVGCGSGILAIAAAKL----G----AKKVLAVDIDPQAVEAARENAE 163 (250)
T ss_pred CEEEEeCCcHHHHHHHHHHc----C----CCeEEEEECCHHHHHHHHHHHH
Confidence 58999999999988754321 1 1258999999999887666654
No 108
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=92.39 E-value=0.25 Score=44.21 Aligned_cols=43 Identities=21% Similarity=0.417 Sum_probs=33.8
Q ss_pred eEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 163 ~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
+|+|+|||+|.++..+.+.. |. .+++-||+|+.+.+.-++++.
T Consensus 2 ~vLDiGcG~G~~~~~la~~~---~~----~~v~gid~s~~~~~~a~~~~~ 44 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERH---PH----LQLHGYTISPEQAEVGRERIR 44 (224)
T ss_pred eEEEECCCCCHHHHHHHHHC---CC----CEEEEEECCHHHHHHHHHHHH
Confidence 69999999999988776542 32 478899999999887776653
No 109
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=92.35 E-value=0.96 Score=43.95 Aligned_cols=75 Identities=25% Similarity=0.277 Sum_probs=51.7
Q ss_pred CCCCCeecCCCh----hHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecCh
Q 021589 126 GAEGDFITSPEV----SQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSP 201 (310)
Q Consensus 126 G~~GDFiTSpeI----s~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP 201 (310)
|...-|+|.|-| .--+|--+ +.+.+..+..-+|+++|||-|-|..-+.+. .|+ .+++|||+|.
T Consensus 126 ~~~~~~~t~pGVFS~~~lD~GS~l------Ll~~l~~~~~~~vlDlGCG~Gvlg~~la~~---~p~----~~vtmvDvn~ 192 (300)
T COG2813 126 GHELTFKTLPGVFSRDKLDKGSRL------LLETLPPDLGGKVLDLGCGYGVLGLVLAKK---SPQ----AKLTLVDVNA 192 (300)
T ss_pred cCceEEEeCCCCCcCCCcChHHHH------HHHhCCccCCCcEEEeCCCccHHHHHHHHh---CCC----CeEEEEecCH
Confidence 677889999886 12233221 222333333348999999999999887654 443 5899999998
Q ss_pred hhHHHHHHhccc
Q 021589 202 TLQKLQHHNLKC 213 (310)
Q Consensus 202 ~Lr~~Q~e~L~~ 213 (310)
.-.+.-++++..
T Consensus 193 ~Av~~ar~Nl~~ 204 (300)
T COG2813 193 RAVESARKNLAA 204 (300)
T ss_pred HHHHHHHHhHHH
Confidence 888777777754
No 110
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=92.28 E-value=0.23 Score=41.11 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=33.6
Q ss_pred eEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 163 ~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
+++++|||.|.++..+++. .|. .+++.||++|.+.+..++++.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~---~~~----~~v~~~E~~~~~~~~l~~~~~ 43 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARK---GAE----GRVIAFEPLPDAYEILEENVK 43 (143)
T ss_pred CEEEccCCccHHHHHHHHh---CCC----CEEEEEecCHHHHHHHHHHHH
Confidence 4899999999998776553 232 379999999999987777654
No 111
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=92.14 E-value=0.37 Score=45.70 Aligned_cols=47 Identities=23% Similarity=0.270 Sum_probs=32.7
Q ss_pred HHHcCCC-CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecCh
Q 021589 153 WEQMGQP-NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSP 201 (310)
Q Consensus 153 w~~~g~p-~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP 201 (310)
.++.|.. ....+||+|||+|.|+.-|-..+... -.....|++||...
T Consensus 10 l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~--~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 10 LEQRGLLNPDSCFVEFGAGRGELSRWVAQALQED--KPSNSRFVLIDRAS 57 (259)
T ss_pred HHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhc--ccCCccEEEEecCc
Confidence 3444442 44699999999999999998877432 01224799999843
No 112
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=91.97 E-value=0.54 Score=41.27 Aligned_cols=38 Identities=13% Similarity=0.159 Sum_probs=29.3
Q ss_pred CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhh
Q 021589 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTL 203 (310)
Q Consensus 160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~L 203 (310)
..-+|+|+|||+|.++..+.+.... ..+++.||+||.+
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~------~~~v~~vDis~~~ 69 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGG------KGRVIAVDLQPMK 69 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCC------CceEEEEeccccc
Confidence 3458999999999999888765421 2368999999964
No 113
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=91.85 E-value=0.58 Score=42.50 Aligned_cols=44 Identities=18% Similarity=0.178 Sum_probs=34.8
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~ 213 (310)
.+++|+|||+|.++...|... +.+++.||+++...+.-++++..
T Consensus 55 ~~vLDl~~GsG~l~l~~lsr~--------a~~V~~vE~~~~a~~~a~~Nl~~ 98 (199)
T PRK10909 55 ARCLDCFAGSGALGLEALSRY--------AAGATLLEMDRAVAQQLIKNLAT 98 (199)
T ss_pred CEEEEcCCCccHHHHHHHHcC--------CCEEEEEECCHHHHHHHHHHHHH
Confidence 489999999999998655432 13799999999999887777654
No 114
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=91.52 E-value=0.26 Score=44.73 Aligned_cols=35 Identities=14% Similarity=0.216 Sum_probs=27.6
Q ss_pred cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecCh
Q 021589 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSP 201 (310)
Q Consensus 161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP 201 (310)
.-.|+|+|||+|.++..+++.... ...++-||++|
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~------~~~V~aVDi~~ 86 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGD------KGRVIACDILP 86 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCC------CceEEEEeccc
Confidence 358999999999999888775421 13689999998
No 115
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=91.47 E-value=0.58 Score=44.87 Aligned_cols=42 Identities=12% Similarity=0.059 Sum_probs=33.8
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
-.|+|+|||+|+++..+.+. ..+++-||+|+.+.+.-++++.
T Consensus 175 ~~VLDl~cG~G~~sl~la~~---------~~~V~gvD~s~~av~~A~~n~~ 216 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATP---------GMQLTGIEISAEAIACAKQSAA 216 (315)
T ss_pred CEEEEccCCCCHHHHHHHhc---------CCEEEEEeCCHHHHHHHHHHHH
Confidence 48999999999998777542 1368999999999987776654
No 116
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=91.41 E-value=0.59 Score=41.08 Aligned_cols=63 Identities=16% Similarity=0.188 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHH---HcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 142 GEMVGVWAMCLWE---QMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 142 Ge~Ia~~~~~~w~---~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
+..+|.|+.+.-. ....-...+|+|+|||.|..+..+.... ...++++-|..+.+...+ .++.
T Consensus 24 a~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~-------~~~~Vv~TD~~~~l~~l~-~Ni~ 89 (173)
T PF10294_consen 24 ALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLF-------GAARVVLTDYNEVLELLR-RNIE 89 (173)
T ss_dssp HHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT--------T-SEEEEEE-S-HHHHHH-HHHH
T ss_pred HHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhcc-------CCceEEEeccchhhHHHH-HHHH
Confidence 3456666655321 1111234599999999996665443321 224799999999444444 4443
No 117
>PLN02366 spermidine synthase
Probab=91.20 E-value=0.84 Score=44.23 Aligned_cols=73 Identities=16% Similarity=0.322 Sum_probs=49.6
Q ss_pred CCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHH
Q 021589 129 GDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH 208 (310)
Q Consensus 129 GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~ 208 (310)
|..-++..---.|-|+++.-.+. ..|.+-+|+++|+|.|.+++.++++ |.. .++++||+++.+.+.-+
T Consensus 65 g~~q~~~~de~~Y~e~l~h~~l~-----~~~~pkrVLiIGgG~G~~~rellk~----~~v---~~V~~VEiD~~Vi~~ar 132 (308)
T PLN02366 65 GVIQLTERDECAYQEMITHLPLC-----SIPNPKKVLVVGGGDGGVLREIARH----SSV---EQIDICEIDKMVIDVSK 132 (308)
T ss_pred CEeeecCccHHHHHHHHHHHHHh-----hCCCCCeEEEEcCCccHHHHHHHhC----CCC---CeEEEEECCHHHHHHHH
Confidence 44433322234677777654332 1344569999999999999888764 322 47999999999988888
Q ss_pred Hhccc
Q 021589 209 HNLKC 213 (310)
Q Consensus 209 e~L~~ 213 (310)
+.+..
T Consensus 133 ~~f~~ 137 (308)
T PLN02366 133 KFFPD 137 (308)
T ss_pred Hhhhh
Confidence 77653
No 118
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=91.18 E-value=0.89 Score=41.50 Aligned_cols=46 Identities=20% Similarity=0.239 Sum_probs=38.4
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~ 213 (310)
-+|+|||.+.|.=+..+.+.+. +.-+++.||.+|...+..++.+..
T Consensus 47 k~vLEIGt~~GySal~la~~l~------~~g~i~tiE~~~~~~~~A~~~~~~ 92 (205)
T PF01596_consen 47 KRVLEIGTFTGYSALWLAEALP------EDGKITTIEIDPERAEIARENFRK 92 (205)
T ss_dssp SEEEEESTTTSHHHHHHHHTST------TTSEEEEEESSHHHHHHHHHHHHH
T ss_pred ceEEEeccccccHHHHHHHhhc------ccceEEEecCcHHHHHHHHHHHHh
Confidence 4999999999999988887652 235899999999999998887764
No 119
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=91.18 E-value=0.71 Score=46.45 Aligned_cols=59 Identities=17% Similarity=0.125 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 142 GEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 142 Ge~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
.+.+..++++.. .......|+|+|||+|+++..+.+.. .+++-||+|+.+.+.-++++.
T Consensus 282 ~e~l~~~vl~~l---~~~~~~~VLDlgcGtG~~sl~la~~~---------~~V~gvD~s~~al~~A~~n~~ 340 (443)
T PRK13168 282 NQKMVARALEWL---DPQPGDRVLDLFCGLGNFTLPLARQA---------AEVVGVEGVEAMVERARENAR 340 (443)
T ss_pred HHHHHHHHHHHh---cCCCCCEEEEEeccCCHHHHHHHHhC---------CEEEEEeCCHHHHHHHHHHHH
Confidence 344445444432 22223589999999999998776532 268999999999887776654
No 120
>PRK06922 hypothetical protein; Provisional
Probab=90.98 E-value=0.46 Score=50.68 Aligned_cols=44 Identities=14% Similarity=0.246 Sum_probs=34.3
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
.+|+|+|||+|.++..+.+. +|+ .+++-||+|+.+.+..++++.
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~---~P~----~kVtGIDIS~~MLe~Ararl~ 463 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEE---TED----KRIYGIDISENVIDTLKKKKQ 463 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHh---CCC----CEEEEEECCHHHHHHHHHHhh
Confidence 59999999999988766543 343 589999999998877666543
No 121
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=90.84 E-value=0.79 Score=43.58 Aligned_cols=54 Identities=26% Similarity=0.361 Sum_probs=43.9
Q ss_pred HcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcccc
Q 021589 155 QMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCM 214 (310)
Q Consensus 155 ~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~ 214 (310)
.+|...--+|+|.|.|+|.|+..++++..... +++-+|+-+...+.-+++|..+
T Consensus 89 ~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G------~v~tyE~r~d~~k~A~~Nl~~~ 142 (256)
T COG2519 89 RLGISPGSRVLEAGTGSGALTAYLARAVGPEG------HVTTYEIREDFAKTARENLSEF 142 (256)
T ss_pred HcCCCCCCEEEEcccCchHHHHHHHHhhCCCc------eEEEEEecHHHHHHHHHHHHHh
Confidence 34655456999999999999999999874332 6888999999999999988763
No 122
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=90.83 E-value=1.7 Score=41.13 Aligned_cols=48 Identities=19% Similarity=0.254 Sum_probs=36.0
Q ss_pred CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (310)
Q Consensus 160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~ 213 (310)
.|-+|+++|+|.||-+-.+...+. . ..+|+.||.|+.+.+.=+..+..
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~---~---~~~~~~vd~s~~~~~l~~~l~~~ 80 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWP---S---LKEYTCVDRSPEMLELAKRLLRA 80 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhc---C---ceeeeeecCCHHHHHHHHHHHhc
Confidence 456999999999997665555443 2 24799999999999876665543
No 123
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=90.73 E-value=0.43 Score=42.12 Aligned_cols=39 Identities=21% Similarity=0.132 Sum_probs=28.5
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHH
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH 208 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~ 208 (310)
-+|+|+|||+|.++..+.+.. ...++-||+|+.+.+.-+
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~--------~~~~~giD~s~~~i~~a~ 53 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEK--------QVRGYGIEIDQDGVLACV 53 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhcc--------CCcEEEEeCCHHHHHHHH
Confidence 489999999999876654321 124688999998876543
No 124
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=90.66 E-value=0.58 Score=46.99 Aligned_cols=43 Identities=16% Similarity=0.112 Sum_probs=32.5
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L 211 (310)
-.+||||||+|.++..+.+. .|+ ..++-||+++.+.+.-.+++
T Consensus 124 p~vLEIGcGsG~~ll~lA~~---~P~----~~~iGIEI~~~~i~~a~~ka 166 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKN---NPN----KLFIGIEIHTPSIEQVLKQI 166 (390)
T ss_pred CeEEEEcCcccHHHHHHHHh---CCC----CCEEEEECCHHHHHHHHHHH
Confidence 38999999999988776543 454 47999999998866554444
No 125
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=90.54 E-value=0.85 Score=42.11 Aligned_cols=46 Identities=13% Similarity=0.076 Sum_probs=36.5
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~ 213 (310)
-+|+|+|+|+|.-+.-+.+.+.. .-+++-||++|...+.-++.+..
T Consensus 70 ~~vLEiGt~~G~s~l~la~~~~~------~g~v~tiD~d~~~~~~A~~n~~~ 115 (234)
T PLN02781 70 KNTLEIGVFTGYSLLTTALALPE------DGRITAIDIDKEAYEVGLEFIKK 115 (234)
T ss_pred CEEEEecCcccHHHHHHHHhCCC------CCEEEEEECCHHHHHHHHHHHHH
Confidence 38999999999977777665421 24799999999999988887754
No 126
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=90.38 E-value=1 Score=43.71 Aligned_cols=44 Identities=11% Similarity=0.104 Sum_probs=31.2
Q ss_pred HHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHH
Q 021589 154 EQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQK 205 (310)
Q Consensus 154 ~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~ 205 (310)
..++.-..-+|+|+|||+|.++..++.. .+ -.++-||+|+.+..
T Consensus 115 ~~l~~~~g~~VLDvGCG~G~~~~~~~~~---g~-----~~v~GiDpS~~ml~ 158 (314)
T TIGR00452 115 PHLSPLKGRTILDVGCGSGYHMWRMLGH---GA-----KSLVGIDPTVLFLC 158 (314)
T ss_pred HhcCCCCCCEEEEeccCCcHHHHHHHHc---CC-----CEEEEEcCCHHHHH
Confidence 3344333359999999999998777643 12 25899999998764
No 127
>PRK01581 speE spermidine synthase; Validated
Probab=90.32 E-value=1.1 Score=44.73 Aligned_cols=59 Identities=20% Similarity=0.344 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHH
Q 021589 139 QMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH 209 (310)
Q Consensus 139 ~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e 209 (310)
-+|=|+|+.-.+. -.+.+-+|+++|+|.|..++.+|++ +. ..++++||++|.+.+.-++
T Consensus 134 ~iYHE~Lvhp~m~-----~h~~PkrVLIIGgGdG~tlrelLk~----~~---v~~It~VEIDpeVIelAr~ 192 (374)
T PRK01581 134 QIYHEALVHPIMS-----KVIDPKRVLILGGGDGLALREVLKY----ET---VLHVDLVDLDGSMINMARN 192 (374)
T ss_pred HHHHHHHHHHHHH-----hCCCCCEEEEECCCHHHHHHHHHhc----CC---CCeEEEEeCCHHHHHHHHh
Confidence 4688888764422 2334469999999999988888764 21 1379999999999887775
No 128
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=89.85 E-value=0.89 Score=44.86 Aligned_cols=42 Identities=10% Similarity=0.040 Sum_probs=33.5
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
-.|+|+|||+|+++.-+... ..+++.||++|...+.-++++.
T Consensus 235 ~~vLDL~cG~G~~~l~la~~---------~~~v~~vE~~~~av~~a~~N~~ 276 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGP---------DTQLTGIEIESEAIACAQQSAQ 276 (374)
T ss_pred CEEEEccCCccHHHHHHhhc---------CCeEEEEECCHHHHHHHHHHHH
Confidence 38999999999998776532 1268999999999987777664
No 129
>PTZ00146 fibrillarin; Provisional
Probab=89.74 E-value=0.77 Score=44.42 Aligned_cols=39 Identities=18% Similarity=0.112 Sum_probs=30.3
Q ss_pred cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHH
Q 021589 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQK 205 (310)
Q Consensus 161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~ 205 (310)
.-+|+|+|||+|+++..+.+..... =.++-||+|+.+.+
T Consensus 133 G~~VLDLGaG~G~~t~~lAdiVG~~------G~VyAVD~s~r~~~ 171 (293)
T PTZ00146 133 GSKVLYLGAASGTTVSHVSDLVGPE------GVVYAVEFSHRSGR 171 (293)
T ss_pred CCEEEEeCCcCCHHHHHHHHHhCCC------CEEEEEECcHHHHH
Confidence 3589999999999999998765221 25889999987543
No 130
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=89.60 E-value=1.1 Score=43.09 Aligned_cols=73 Identities=19% Similarity=0.304 Sum_probs=53.5
Q ss_pred eecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHh
Q 021589 131 FITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN 210 (310)
Q Consensus 131 FiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~ 210 (310)
.-|+-.-.-.+-|+++.-.+.. .|.+-+|+-||.|.|.+++.+|++... -+.++||+.|...+..++.
T Consensus 52 ~q~~e~de~~yhEml~h~~~~a-----h~~pk~VLiiGgGdG~tlRevlkh~~v-------e~i~~VEID~~Vi~~ar~~ 119 (282)
T COG0421 52 VQLTERDEFIYHEMLAHVPLLA-----HPNPKRVLIIGGGDGGTLREVLKHLPV-------ERITMVEIDPAVIELARKY 119 (282)
T ss_pred hhhccchhHHHHHHHHhchhhh-----CCCCCeEEEECCCccHHHHHHHhcCCc-------ceEEEEEcCHHHHHHHHHh
Confidence 3344455567777766544322 233349999999999999999987421 2799999999999999999
Q ss_pred ccccc
Q 021589 211 LKCMD 215 (310)
Q Consensus 211 L~~~~ 215 (310)
|....
T Consensus 120 l~~~~ 124 (282)
T COG0421 120 LPEPS 124 (282)
T ss_pred ccCcc
Confidence 97644
No 131
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=89.17 E-value=0.88 Score=45.76 Aligned_cols=38 Identities=21% Similarity=0.359 Sum_probs=30.8
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHH
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH 208 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~ 208 (310)
-+|+|+|||+|.++..+.+.. -+++-||+|+.+.+.-+
T Consensus 39 ~~vLDlGcG~G~~~~~la~~~---------~~v~giD~s~~~l~~a~ 76 (475)
T PLN02336 39 KSVLELGAGIGRFTGELAKKA---------GQVIALDFIESVIKKNE 76 (475)
T ss_pred CEEEEeCCCcCHHHHHHHhhC---------CEEEEEeCCHHHHHHHH
Confidence 489999999999999876542 26899999999986543
No 132
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=89.12 E-value=1.1 Score=40.91 Aligned_cols=36 Identities=28% Similarity=0.308 Sum_probs=27.0
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHH
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQK 205 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~ 205 (310)
-+|+++|||.|+|+..+.+.- .++-.=||+++....
T Consensus 15 srVLDLGCGdG~LL~~L~~~k--------~v~g~GvEid~~~v~ 50 (193)
T PF07021_consen 15 SRVLDLGCGDGELLAYLKDEK--------QVDGYGVEIDPDNVA 50 (193)
T ss_pred CEEEecCCCchHHHHHHHHhc--------CCeEEEEecCHHHHH
Confidence 499999999999887655431 246788899987544
No 133
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=89.00 E-value=0.86 Score=47.62 Aligned_cols=64 Identities=17% Similarity=0.223 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHH
Q 021589 139 QMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQK 205 (310)
Q Consensus 139 ~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~ 205 (310)
..|+++|-..+++.--.........|.=+|||||-|...+|++.+..- .+++.++||.+|.---
T Consensus 346 ~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~---RkVklyavEKNPNAiv 409 (649)
T KOG0822|consen 346 DQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETD---RKVKLYAVEKNPNAIV 409 (649)
T ss_pred HHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhc---CceEEEEEecCcchhh
Confidence 567777776665542211111256888999999999999999986432 4689999999996543
No 134
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=88.98 E-value=1.1 Score=40.40 Aligned_cols=47 Identities=17% Similarity=0.323 Sum_probs=32.1
Q ss_pred CCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 021589 157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (310)
Q Consensus 157 g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L 211 (310)
+.+.+ .+||||||.|.++..+.. .+|+ ..|+-||++......-.+++
T Consensus 15 ~~~~~-l~lEIG~G~G~~l~~~A~---~~Pd----~n~iGiE~~~~~v~~a~~~~ 61 (195)
T PF02390_consen 15 GNDNP-LILEIGCGKGEFLIELAK---RNPD----INFIGIEIRKKRVAKALRKA 61 (195)
T ss_dssp TSCCE-EEEEET-TTSHHHHHHHH---HSTT----SEEEEEES-HHHHHHHHHHH
T ss_pred CCCCC-eEEEecCCCCHHHHHHHH---HCCC----CCEEEEecchHHHHHHHHHH
Confidence 33444 899999999998877654 4566 47999999987765444443
No 135
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=88.63 E-value=1.2 Score=43.81 Aligned_cols=42 Identities=19% Similarity=0.216 Sum_probs=33.6
Q ss_pred eEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589 163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (310)
Q Consensus 163 ~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~ 213 (310)
.++|+|||+|+++..+-+.. -+++.||+|+.+.+..++++..
T Consensus 200 ~vlDl~~G~G~~sl~la~~~---------~~v~~vE~~~~av~~a~~n~~~ 241 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNF---------RRVLATEIAKPSVNAAQYNIAA 241 (353)
T ss_pred cEEEEeccccHHHHHHHHhC---------CEEEEEECCHHHHHHHHHHHHH
Confidence 69999999999998554332 1699999999999988877643
No 136
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=88.38 E-value=1.7 Score=40.91 Aligned_cols=52 Identities=19% Similarity=0.241 Sum_probs=38.1
Q ss_pred cCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589 156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (310)
Q Consensus 156 ~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~ 213 (310)
++...--+|+|.|.|+|.|+..+++++... =+++-.|+.+...+.-++.+..
T Consensus 36 l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~------G~v~t~E~~~~~~~~A~~n~~~ 87 (247)
T PF08704_consen 36 LDIRPGSRVLEAGTGSGSLTHALARAVGPT------GHVYTYEFREDRAEKARKNFER 87 (247)
T ss_dssp TT--TT-EEEEE--TTSHHHHHHHHHHTTT------SEEEEEESSHHHHHHHHHHHHH
T ss_pred cCCCCCCEEEEecCCcHHHHHHHHHHhCCC------eEEEccccCHHHHHHHHHHHHH
Confidence 454334599999999999999999987432 2688899999999888877765
No 137
>PLN02823 spermine synthase
Probab=88.24 E-value=2 Score=42.23 Aligned_cols=73 Identities=15% Similarity=0.257 Sum_probs=49.8
Q ss_pred CCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHH
Q 021589 129 GDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH 208 (310)
Q Consensus 129 GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~ 208 (310)
|+.-++..---+|=|+++.-.+. -.|.+-+|+.+|+|.|.+++.+|++. + ..++++||+.|.+.+.-+
T Consensus 77 g~~qs~~~de~~YhE~l~h~~l~-----~~~~pk~VLiiGgG~G~~~re~l~~~---~----~~~v~~VEiD~~vv~lar 144 (336)
T PLN02823 77 GKMQSAEADEFVYHESLVHPALL-----HHPNPKTVFIMGGGEGSTAREVLRHK---T----VEKVVMCDIDQEVVDFCR 144 (336)
T ss_pred CccccccchHHHHHHHHHhHHHh-----hCCCCCEEEEECCCchHHHHHHHhCC---C----CCeEEEEECCHHHHHHHH
Confidence 44443322223577777654332 12345689999999999999888642 1 137999999999999988
Q ss_pred Hhccc
Q 021589 209 HNLKC 213 (310)
Q Consensus 209 e~L~~ 213 (310)
+.+..
T Consensus 145 ~~~~~ 149 (336)
T PLN02823 145 KHLTV 149 (336)
T ss_pred Hhccc
Confidence 87753
No 138
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=88.13 E-value=1.6 Score=40.92 Aligned_cols=50 Identities=10% Similarity=0.307 Sum_probs=36.8
Q ss_pred cCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589 156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (310)
Q Consensus 156 ~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~ 213 (310)
+|...+..++|+|||+|+.-. -+| .....+++.||++|.|.+.-.+...+
T Consensus 72 ~gk~~K~~vLEvgcGtG~Nfk-------fy~-~~p~~svt~lDpn~~mee~~~ks~~E 121 (252)
T KOG4300|consen 72 LGKSGKGDVLEVGCGTGANFK-------FYP-WKPINSVTCLDPNEKMEEIADKSAAE 121 (252)
T ss_pred hcccCccceEEecccCCCCcc-------ccc-CCCCceEEEeCCcHHHHHHHHHHHhh
Confidence 456677899999999998321 011 12346899999999999988887765
No 139
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=88.13 E-value=2.5 Score=40.78 Aligned_cols=65 Identities=15% Similarity=0.191 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589 141 FGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (310)
Q Consensus 141 FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~ 213 (310)
.+|+=..-+....++++..+--+|+|||||-|.|+.-..+. + ..+++-|..|+...+.-++++.+
T Consensus 53 L~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~---y-----~v~V~GvTlS~~Q~~~~~~r~~~ 117 (283)
T COG2230 53 LEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEE---Y-----GVTVVGVTLSEEQLAYAEKRIAA 117 (283)
T ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHH---c-----CCEEEEeeCCHHHHHHHHHHHHH
Confidence 34443344445666777655579999999999998765443 2 25789999999998887777754
No 140
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=87.95 E-value=1.7 Score=39.73 Aligned_cols=65 Identities=17% Similarity=0.271 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHH
Q 021589 138 SQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH 209 (310)
Q Consensus 138 s~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e 209 (310)
+..|||+.-..+..+.+.++....-.+++||+|.|......--.. .+ -+-+=||+.|.+.+..++
T Consensus 20 ~~~YGEi~~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~----~~---~~~~GIEi~~~~~~~a~~ 84 (205)
T PF08123_consen 20 SETYGEISPEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQT----GC---KKSVGIEILPELHDLAEE 84 (205)
T ss_dssp CCCGGGCHHHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH---------SEEEEEE-SHHHHHHHHH
T ss_pred CcceeecCHHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHc----CC---cEEEEEEechHHHHHHHH
Confidence 357888888888888888876656799999999999765543221 11 136889999998775544
No 141
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=87.85 E-value=1.4 Score=40.93 Aligned_cols=48 Identities=17% Similarity=0.211 Sum_probs=32.7
Q ss_pred CCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 021589 157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (310)
Q Consensus 157 g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L 211 (310)
|.+..-.+||||+|.|++...+- ++.|+ ..|+=||+...-...-.+++
T Consensus 45 ~~~~~pi~lEIGfG~G~~l~~~A---~~nP~----~nfiGiEi~~~~v~~~l~k~ 92 (227)
T COG0220 45 GNNNAPIVLEIGFGMGEFLVEMA---KKNPE----KNFLGIEIRVPGVAKALKKI 92 (227)
T ss_pred CCCCCcEEEEECCCCCHHHHHHH---HHCCC----CCEEEEEEehHHHHHHHHHH
Confidence 33332489999999999877664 35676 36999999866554433333
No 142
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=87.75 E-value=1.7 Score=43.31 Aligned_cols=42 Identities=21% Similarity=0.192 Sum_probs=34.1
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
-.|+|+|||.|+++.-+.+.. -+++-||+|+.+.+.-++++.
T Consensus 294 ~~vLDl~cG~G~~sl~la~~~---------~~V~~vE~~~~av~~a~~n~~ 335 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPLAKQA---------KSVVGIEVVPESVEKAQQNAE 335 (431)
T ss_pred CEEEEcCCCcCHHHHHHHHhC---------CEEEEEEcCHHHHHHHHHHHH
Confidence 489999999999998765431 268999999999987777664
No 143
>PRK04148 hypothetical protein; Provisional
Probab=87.64 E-value=1.8 Score=37.26 Aligned_cols=55 Identities=13% Similarity=0.188 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHcCCCCcceEEEecCCchH-HHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHh
Q 021589 144 MVGVWAMCLWEQMGQPNRVNLVELGPGRGT-LMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN 210 (310)
Q Consensus 144 ~Ia~~~~~~w~~~g~p~~l~IvElGaG~Gt-La~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~ 210 (310)
.||.|+.+.... .....|+|+|+|.|. +|. .|... ..+++.||++|...+.-++.
T Consensus 3 ~i~~~l~~~~~~---~~~~kileIG~GfG~~vA~-~L~~~--------G~~ViaIDi~~~aV~~a~~~ 58 (134)
T PRK04148 3 TIAEFIAENYEK---GKNKKIVELGIGFYFKVAK-KLKES--------GFDVIVIDINEKAVEKAKKL 58 (134)
T ss_pred HHHHHHHHhccc---ccCCEEEEEEecCCHHHHH-HHHHC--------CCEEEEEECCHHHHHHHHHh
Confidence 356666554322 123589999999996 554 44321 13799999999977655554
No 144
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=87.59 E-value=1.3 Score=41.98 Aligned_cols=46 Identities=22% Similarity=0.424 Sum_probs=33.2
Q ss_pred CCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 159 PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 159 p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
...-+|+|+|||+|+++..+++. +|+ ++.+++|. |...+.-++++.
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~---~p~----~~~~~~D~-~~~~~~a~~~~~ 193 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKH---FPE----LDSTILNL-PGAIDLVNENAA 193 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHH---CCC----CEEEEEec-HHHHHHHHHHHH
Confidence 33459999999999999988775 354 57889997 555555444443
No 145
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=87.58 E-value=0.89 Score=40.66 Aligned_cols=43 Identities=21% Similarity=0.223 Sum_probs=34.7
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
.+++|++||+|.++...+.... -+.+.||.++...+.-++++.
T Consensus 51 ~~vLDLfaGsG~lglea~srga--------~~v~~vE~~~~a~~~~~~N~~ 93 (189)
T TIGR00095 51 AHLLDVFAGSGLLGEEALSRGA--------KVAFLEEDDRKANQTLKENLA 93 (189)
T ss_pred CEEEEecCCCcHHHHHHHhCCC--------CEEEEEeCCHHHHHHHHHHHH
Confidence 4899999999999988876421 258999999998887777664
No 146
>PRK03612 spermidine synthase; Provisional
Probab=87.34 E-value=0.81 Score=47.26 Aligned_cols=59 Identities=20% Similarity=0.337 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHH
Q 021589 139 QMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH 209 (310)
Q Consensus 139 ~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e 209 (310)
..|-|+++.-.+. ..+++-+|+++|+|+|.+++.++++ |.. -++++||++|.+.+.-++
T Consensus 281 ~~y~e~l~~~~l~-----~~~~~~rVL~IG~G~G~~~~~ll~~----~~v---~~v~~VEid~~vi~~ar~ 339 (521)
T PRK03612 281 YRYHEALVHPAMA-----ASARPRRVLVLGGGDGLALREVLKY----PDV---EQVTLVDLDPAMTELART 339 (521)
T ss_pred HHHHHHHHHHHHh-----hCCCCCeEEEEcCCccHHHHHHHhC----CCc---CeEEEEECCHHHHHHHHh
Confidence 4567766532111 1244568999999999999888753 221 379999999999998887
No 147
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=87.24 E-value=6.2 Score=38.54 Aligned_cols=85 Identities=16% Similarity=0.277 Sum_probs=53.6
Q ss_pred CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhhhhcccCCCCeEEe
Q 021589 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWH 239 (310)
Q Consensus 160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~v~W~ 239 (310)
.+++|++|-||.|. .||+.+.+.|.. ..++.++|.||...+.=++.+.+.. ....++|.
T Consensus 135 ~pvrIlDIAaG~GR---YvlDal~~~~~~--~~~i~LrDys~~Nv~~g~~li~~~g----------------L~~i~~f~ 193 (311)
T PF12147_consen 135 RPVRILDIAAGHGR---YVLDALEKHPER--PDSILLRDYSPINVEKGRALIAERG----------------LEDIARFE 193 (311)
T ss_pred CceEEEEeccCCcH---HHHHHHHhCCCC--CceEEEEeCCHHHHHHHHHHHHHcC----------------CccceEEE
Confidence 56899999999999 566666555543 2479999999999776665554311 11122332
Q ss_pred -------cccccCCCCCCEEEEEeccccccccee
Q 021589 240 -------AALEQVPSGFPTIIVAHEFYDALPVHQ 266 (310)
Q Consensus 240 -------~sleelp~~~~~vIiANE~fDALPvh~ 266 (310)
.++..+... |.++|.-=+++-||=..
T Consensus 194 ~~dAfd~~~l~~l~p~-P~l~iVsGL~ElF~Dn~ 226 (311)
T PF12147_consen 194 QGDAFDRDSLAALDPA-PTLAIVSGLYELFPDND 226 (311)
T ss_pred ecCCCCHhHhhccCCC-CCEEEEecchhhCCcHH
Confidence 123333332 67777777788787644
No 148
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=87.07 E-value=1.6 Score=42.85 Aligned_cols=41 Identities=24% Similarity=0.249 Sum_probs=33.3
Q ss_pred eEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 163 ~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
.++|++||+|+++..+.+.. -+++.||+|+...+..++++.
T Consensus 209 ~vLDl~~G~G~~sl~la~~~---------~~v~~vE~~~~ai~~a~~N~~ 249 (362)
T PRK05031 209 DLLELYCGNGNFTLALARNF---------RRVLATEISKPSVAAAQYNIA 249 (362)
T ss_pred eEEEEeccccHHHHHHHhhC---------CEEEEEECCHHHHHHHHHHHH
Confidence 69999999999998655432 168999999999988877664
No 149
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=86.41 E-value=2.5 Score=40.74 Aligned_cols=66 Identities=9% Similarity=0.023 Sum_probs=41.2
Q ss_pred eecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHh
Q 021589 131 FITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN 210 (310)
Q Consensus 131 FiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~ 210 (310)
|+++..+.+- +|+.++++. +....-.|+|.|||+|+++..... . ..+++-+|+++.+.+.-+++
T Consensus 160 ~~~~~~l~~~----la~~~~~l~---~~~~g~~vLDp~cGtG~~lieaa~----~-----~~~v~g~Di~~~~~~~a~~n 223 (329)
T TIGR01177 160 FFKPGSMDPK----LARAMVNLA---RVTEGDRVLDPFCGTGGFLIEAGL----M-----GAKVIGCDIDWKMVAGARIN 223 (329)
T ss_pred ccCCCCCCHH----HHHHHHHHh---CCCCcCEEEECCCCCCHHHHHHHH----h-----CCeEEEEcCCHHHHHHHHHH
Confidence 4555445554 344443322 222234899999999998654321 1 13689999999988876666
Q ss_pred cc
Q 021589 211 LK 212 (310)
Q Consensus 211 L~ 212 (310)
+.
T Consensus 224 l~ 225 (329)
T TIGR01177 224 LE 225 (329)
T ss_pred HH
Confidence 64
No 150
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=86.29 E-value=1.7 Score=42.06 Aligned_cols=36 Identities=17% Similarity=0.137 Sum_probs=28.5
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHH
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQK 205 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~ 205 (310)
-+|+|+|||+|.++..++.. .+ -.++-||+|+.+..
T Consensus 124 ~~VLDIGCG~G~~~~~la~~---g~-----~~V~GiD~S~~~l~ 159 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGA---GA-----KLVVGIDPSQLFLC 159 (322)
T ss_pred CEEEEeccCCcHHHHHHHHc---CC-----CEEEEEcCCHHHHH
Confidence 58999999999999877654 22 14889999998754
No 151
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=86.08 E-value=3.1 Score=39.51 Aligned_cols=100 Identities=15% Similarity=0.158 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCc
Q 021589 142 GEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNAND 221 (310)
Q Consensus 142 Ge~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~ 221 (310)
.++=.+-+..+.++++...--+|+|||||-|.++..+.+.. .++++-|..|+.-.+.-++++..... .+
T Consensus 44 e~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~--------g~~v~gitlS~~Q~~~a~~~~~~~gl--~~- 112 (273)
T PF02353_consen 44 EEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY--------GCHVTGITLSEEQAEYARERIREAGL--ED- 112 (273)
T ss_dssp HHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----------EEEEEES-HHHHHHHHHHHHCSTS--SS-
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc--------CcEEEEEECCHHHHHHHHHHHHhcCC--CC-
Confidence 34433444445556665545699999999999999887653 14789999999888776666653211 00
Q ss_pred cchhhhhcccCCCCeEEecccccCCCCCCEEEEEecccccccce
Q 021589 222 NVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVH 265 (310)
Q Consensus 222 ~~~~~~~~~~~~~~v~W~~sleelp~~~~~vIiANE~fDALPvh 265 (310)
...|.. .+..+++.. ---|+|-|.|-.++..
T Consensus 113 -----------~v~v~~-~D~~~~~~~-fD~IvSi~~~Ehvg~~ 143 (273)
T PF02353_consen 113 -----------RVEVRL-QDYRDLPGK-FDRIVSIEMFEHVGRK 143 (273)
T ss_dssp -----------TEEEEE-S-GGG---S--SEEEEESEGGGTCGG
T ss_pred -----------ceEEEE-eeccccCCC-CCEEEEEechhhcChh
Confidence 012222 122334433 2358888999998643
No 152
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=85.12 E-value=2.5 Score=42.35 Aligned_cols=46 Identities=13% Similarity=0.127 Sum_probs=36.7
Q ss_pred cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (310)
Q Consensus 161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~ 213 (310)
.-+|+|+|||+|.++..+++.. +. .+++-+|+|+.+.+..++++..
T Consensus 245 g~~VLDlgaG~G~~t~~la~~~---~~----~~v~a~D~s~~~l~~~~~n~~~ 290 (427)
T PRK10901 245 GERVLDACAAPGGKTAHILELA---PQ----AQVVALDIDAQRLERVRENLQR 290 (427)
T ss_pred CCEEEEeCCCCChHHHHHHHHc---CC----CEEEEEeCCHHHHHHHHHHHHH
Confidence 3589999999999998887654 21 3799999999998877777653
No 153
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=85.00 E-value=3.8 Score=37.24 Aligned_cols=60 Identities=22% Similarity=0.426 Sum_probs=37.7
Q ss_pred CCChhHHHHHHHHHHHHH-----HHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecC
Q 021589 134 SPEVSQMFGEMVGVWAMC-----LWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECS 200 (310)
Q Consensus 134 SpeIs~~FGe~Ia~~~~~-----~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~S 200 (310)
.|+....|....+..-.. +......+..-+||++|+|.|.++..+++. +|+ +++++.|.-
T Consensus 69 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~---~P~----l~~~v~Dlp 133 (241)
T PF00891_consen 69 DPELAKRFNAAMAEYSRLNAFDILLEAFDFSGFKTVVDVGGGSGHFAIALARA---YPN----LRATVFDLP 133 (241)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTSSEEEEET-TTSHHHHHHHHH---STT----SEEEEEE-H
T ss_pred ChHHHHHHHHHHHhhhhcchhhhhhccccccCccEEEeccCcchHHHHHHHHH---CCC----CcceeeccH
Confidence 355666666665553211 122234444458999999999999999764 565 578999883
No 154
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=84.94 E-value=2.8 Score=38.95 Aligned_cols=47 Identities=11% Similarity=0.104 Sum_probs=32.5
Q ss_pred HHHHHHHcCCC-CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhh
Q 021589 149 AMCLWEQMGQP-NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTL 203 (310)
Q Consensus 149 ~~~~w~~~g~p-~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~L 203 (310)
+....+..+.. ....++++|||+|.|+.-+++.- +-+++-||+|+.+
T Consensus 63 L~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~g--------a~~v~avD~~~~~ 110 (228)
T TIGR00478 63 LKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKG--------AKEVYGVDVGYNQ 110 (228)
T ss_pred HHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcC--------CCEEEEEeCCHHH
Confidence 33444444432 34589999999999998777641 1368999999943
No 155
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=84.63 E-value=0.71 Score=43.80 Aligned_cols=76 Identities=16% Similarity=0.161 Sum_probs=52.3
Q ss_pred CCCeecCCChh---HHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcC-----ccccceEEEEec
Q 021589 128 EGDFITSPEVS---QMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKN-----FTESLHIHLVEC 199 (310)
Q Consensus 128 ~GDFiTSpeIs---~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~-----~~~~l~y~iVE~ 199 (310)
-+|+|++++=+ ..+.-+++..+.+-|....+ ..+.|+|+|-|+|....-++..+..+.. ...++.|+-+|.
T Consensus 24 fdd~Y~~~~~gl~Et~~vf~~gn~L~~~~~~~~~-~~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~ 102 (252)
T COG4121 24 FDDVYFLKSNGLNESMPVFAIGNGLLQNWPDLSQ-EILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIEL 102 (252)
T ss_pred hcccccccccchhhhHHHHHhccCcccccccccc-cceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEe
Confidence 47888887631 33444555555555655543 3589999999999999888887754332 356789999998
Q ss_pred ChhhH
Q 021589 200 SPTLQ 204 (310)
Q Consensus 200 SP~Lr 204 (310)
.|--+
T Consensus 103 ~P~~~ 107 (252)
T COG4121 103 DPFSP 107 (252)
T ss_pred CCCCh
Confidence 87543
No 156
>PLN02476 O-methyltransferase
Probab=83.96 E-value=3.5 Score=39.61 Aligned_cols=46 Identities=9% Similarity=-0.016 Sum_probs=37.2
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~ 213 (310)
-+|+|+|.|+|.-+..+...+.. + -+++-+|.+|...+.-++.+..
T Consensus 120 k~VLEIGT~tGySal~lA~al~~--~----G~V~TiE~d~e~~~~Ar~n~~~ 165 (278)
T PLN02476 120 ERCIEVGVYTGYSSLAVALVLPE--S----GCLVACERDSNSLEVAKRYYEL 165 (278)
T ss_pred CeEEEecCCCCHHHHHHHHhCCC--C----CEEEEEECCHHHHHHHHHHHHH
Confidence 39999999999999988776522 1 2589999999999888887754
No 157
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=82.43 E-value=1.9 Score=40.74 Aligned_cols=71 Identities=14% Similarity=0.167 Sum_probs=49.0
Q ss_pred CCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHH
Q 021589 128 EGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ 207 (310)
Q Consensus 128 ~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q 207 (310)
+.+|.|+.-|--+=.+|.++.+.- ..+..+.+--|++||||+|--+. +|.. +. ..++=||+||.|-+.-
T Consensus 20 A~kYt~nsri~~IQ~em~eRaLEL--Lalp~~~~~~iLDIGCGsGLSg~-vL~~----~G----h~wiGvDiSpsML~~a 88 (270)
T KOG1541|consen 20 APKYTQNSRIVLIQAEMAERALEL--LALPGPKSGLILDIGCGSGLSGS-VLSD----SG----HQWIGVDISPSMLEQA 88 (270)
T ss_pred hhhccccceeeeehHHHHHHHHHH--hhCCCCCCcEEEEeccCCCcchh-eecc----CC----ceEEeecCCHHHHHHH
Confidence 467888888877778888776632 22333347789999999996554 3321 11 3588999999998755
Q ss_pred HH
Q 021589 208 HH 209 (310)
Q Consensus 208 ~e 209 (310)
.+
T Consensus 89 ~~ 90 (270)
T KOG1541|consen 89 VE 90 (270)
T ss_pred HH
Confidence 53
No 158
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=81.40 E-value=12 Score=34.11 Aligned_cols=40 Identities=20% Similarity=0.257 Sum_probs=28.5
Q ss_pred CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHH
Q 021589 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH 208 (310)
Q Consensus 160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~ 208 (310)
.+.+++++|||.|+.+.-+.+. -..++-||.|+.-.+..+
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~---------G~~VtAvD~s~~al~~l~ 69 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQ---------GFDVTAVDISPVALEKLQ 69 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHT---------T-EEEEEESSHHHHHHHH
T ss_pred CCCcEEEcCCCCcHHHHHHHHC---------CCeEEEEECCHHHHHHHH
Confidence 4569999999999998876543 146999999996655433
No 159
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=81.01 E-value=3.2 Score=40.67 Aligned_cols=44 Identities=16% Similarity=0.145 Sum_probs=31.8
Q ss_pred CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 021589 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (310)
Q Consensus 160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L 211 (310)
...+|+|||||+|- |+..+...-. -.|+-||+|+.-.+.-++|.
T Consensus 62 ~~~~VLDl~CGkGG---DL~Kw~~~~i-----~~~vg~Dis~~si~ea~~Ry 105 (331)
T PF03291_consen 62 PGLTVLDLCCGKGG---DLQKWQKAKI-----KHYVGIDISEESIEEARERY 105 (331)
T ss_dssp TT-EEEEET-TTTT---THHHHHHTT------SEEEEEES-HHHHHHHHHHH
T ss_pred CCCeEEEecCCCch---hHHHHHhcCC-----CEEEEEeCCHHHHHHHHHHH
Confidence 45799999999998 8888865422 36999999998877666666
No 160
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=80.69 E-value=2.8 Score=40.09 Aligned_cols=106 Identities=18% Similarity=0.304 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHHhcCCcc---cHHHHHHHhhcCCCCcccCCC----CCCCCCCCeecCCChhHHHHHHHHHHHHHHHHH
Q 021589 83 ESELVKHLKGIIKFRGGPI---SVAEYMEEVLTNPKAGFYINR----DVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQ 155 (310)
Q Consensus 83 ~~~L~~~i~~~I~~~~GpI---sf~dFM~~aLY~P~~GYY~~~----~~~G~~GDFiTSpeIs~~FGe~Ia~~~~~~w~~ 155 (310)
|++-.+.|.+-.+.. +.+ .+..+....| ..++++ ..+|+++=|+=|.+- |..++..-- ..|.
T Consensus 22 D~ET~~FL~~S~e~S-~~~~~ql~~~l~~~~L-----~~f~S~T~iNG~LgRG~MFvfS~~Q---~~~LL~~~~-~~~~- 90 (265)
T PF05219_consen 22 DEETQEFLDRSYEKS-DWFFTQLWHSLASSIL-----SWFMSKTDINGILGRGSMFVFSEEQ---FRKLLRISG-FSWN- 90 (265)
T ss_pred CHHHHHHHHHhHHhH-HHHHHHHHHHHHHHHH-----HHHHhHHhHhhhhcCCcEEEecHHH---HHHHhhhhc-cCCC-
Confidence 556566666655543 321 2233333344 344432 246888889877542 222222110 0111
Q ss_pred cCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHH
Q 021589 156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH 209 (310)
Q Consensus 156 ~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e 209 (310)
..-...++++||||.|.....+-..+ . +++.-|+|+.||.+.++
T Consensus 91 -~~~~~~~lLDlGAGdG~VT~~l~~~f---~------~v~aTE~S~~Mr~rL~~ 134 (265)
T PF05219_consen 91 -PDWKDKSLLDLGAGDGEVTERLAPLF---K------EVYATEASPPMRWRLSK 134 (265)
T ss_pred -CcccCCceEEecCCCcHHHHHHHhhc---c------eEEeecCCHHHHHHHHh
Confidence 10134589999999999887764332 2 37788999999987665
No 161
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=80.40 E-value=5.1 Score=36.51 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=33.6
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
-.++++|||+|+++-+.... .| +.+.+-||.++...+.-+++..
T Consensus 36 ~~l~DIGaGtGsi~iE~a~~---~p----~~~v~AIe~~~~a~~~~~~N~~ 79 (187)
T COG2242 36 DRLWDIGAGTGSITIEWALA---GP----SGRVIAIERDEEALELIERNAA 79 (187)
T ss_pred CEEEEeCCCccHHHHHHHHh---CC----CceEEEEecCHHHHHHHHHHHH
Confidence 49999999999999998732 23 3589999999887775555443
No 162
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=80.23 E-value=2.3 Score=40.25 Aligned_cols=78 Identities=17% Similarity=0.311 Sum_probs=50.4
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhhhhcccCCCCeEEec-
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHA- 240 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~v~W~~- 240 (310)
++|+++|||-|.|+.-+-+.- .+++-+|+|+.+.+.-+..-.+ .+..+.|-.
T Consensus 61 ~~vLDvGCGgG~Lse~mAr~G---------a~VtgiD~se~~I~~Ak~ha~e------------------~gv~i~y~~~ 113 (243)
T COG2227 61 LRVLDVGCGGGILSEPLARLG---------ASVTGIDASEKPIEVAKLHALE------------------SGVNIDYRQA 113 (243)
T ss_pred CeEEEecCCccHhhHHHHHCC---------CeeEEecCChHHHHHHHHhhhh------------------ccccccchhh
Confidence 699999999998888775532 3689999999988765543222 122333321
Q ss_pred ccccCCC--CCCEEEEEeccccccccee
Q 021589 241 ALEQVPS--GFPTIIVAHEFYDALPVHQ 266 (310)
Q Consensus 241 sleelp~--~~~~vIiANE~fDALPvh~ 266 (310)
..+++.. +..-+|+++|++--.|--.
T Consensus 114 ~~edl~~~~~~FDvV~cmEVlEHv~dp~ 141 (243)
T COG2227 114 TVEDLASAGGQFDVVTCMEVLEHVPDPE 141 (243)
T ss_pred hHHHHHhcCCCccEEEEhhHHHccCCHH
Confidence 1233322 2346899999998777543
No 163
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=80.20 E-value=4.8 Score=38.78 Aligned_cols=57 Identities=23% Similarity=0.268 Sum_probs=41.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHH
Q 021589 136 EVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQK 205 (310)
Q Consensus 136 eIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~ 205 (310)
+|=+.++.-||.- .| ..++||+|+|+-+=++-+|++++... ..++|+-||+|...-.
T Consensus 64 aIl~~~a~Eia~~-------~g---~~~lveLGsGns~Ktr~Llda~~~~~---~~~ryvpiDv~a~iL~ 120 (321)
T COG4301 64 AILQARAAEIASI-------TG---ACTLVELGSGNSTKTRILLDALAHRG---SLLRYVPIDVSASILR 120 (321)
T ss_pred HHHHHHHHHHHHh-------hC---cceEEEecCCccHHHHHHHHHhhhcC---CcceeeeecccHHHHH
Confidence 3445555555543 34 36999999999999999999986532 1268999999987544
No 164
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=80.01 E-value=3.8 Score=38.22 Aligned_cols=73 Identities=25% Similarity=0.343 Sum_probs=49.4
Q ss_pred CCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHH
Q 021589 129 GDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH 208 (310)
Q Consensus 129 GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~ 208 (310)
|+.-++-.--..|-|+|+...+.. .|.+-+|+-||.|.|.+++.++++ +.. .++.+||+.|...+..+
T Consensus 50 g~~q~~e~de~~y~e~l~h~~~~~-----~~~p~~VLiiGgG~G~~~~ell~~----~~~---~~i~~VEiD~~Vv~~a~ 117 (246)
T PF01564_consen 50 GDVQLSERDEFIYHEMLVHPPLLL-----HPNPKRVLIIGGGDGGTARELLKH----PPV---ESITVVEIDPEVVELAR 117 (246)
T ss_dssp TEEEEETTTHHHHHHHHHHHHHHH-----SSST-EEEEEESTTSHHHHHHTTS----TT----SEEEEEES-HHHHHHHH
T ss_pred CeEEEEEechHHHHHHHhhhHhhc-----CCCcCceEEEcCCChhhhhhhhhc----CCc---ceEEEEecChHHHHHHH
Confidence 444444333356778777544322 345569999999999998888653 211 37999999999999988
Q ss_pred Hhccc
Q 021589 209 HNLKC 213 (310)
Q Consensus 209 e~L~~ 213 (310)
+.+..
T Consensus 118 ~~f~~ 122 (246)
T PF01564_consen 118 KYFPE 122 (246)
T ss_dssp HHTHH
T ss_pred Hhchh
Confidence 87754
No 165
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=79.91 E-value=1.9 Score=40.98 Aligned_cols=59 Identities=19% Similarity=0.368 Sum_probs=41.7
Q ss_pred HHHHHHHHHc-CCCC--cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHh
Q 021589 147 VWAMCLWEQM-GQPN--RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN 210 (310)
Q Consensus 147 ~~~~~~w~~~-g~p~--~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~ 210 (310)
+|+.+.|-.+ ..+. +.+|+|+|||-|-....||+.-.. +++.++-.+.||.-.++-++.
T Consensus 55 ~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n-----~~l~v~acDfsp~Ai~~vk~~ 116 (264)
T KOG2361|consen 55 NWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPN-----NRLKVYACDFSPRAIELVKKS 116 (264)
T ss_pred HHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCC-----CCeEEEEcCCChHHHHHHHhc
Confidence 4666655543 2222 238999999999999999876422 237889999999888766654
No 166
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=79.76 E-value=3.6 Score=38.47 Aligned_cols=46 Identities=13% Similarity=0.052 Sum_probs=36.1
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~ 213 (310)
-+|+|+|||.|..+..+...+... -.++-+|+|+.+.+.-++++..
T Consensus 73 ~~VLDl~ag~G~kt~~la~~~~~~------g~v~a~D~~~~~l~~~~~n~~~ 118 (264)
T TIGR00446 73 ERVLDMAAAPGGKTTQISALMKNE------GAIVANEFSKSRTKVLIANINR 118 (264)
T ss_pred CEEEEECCCchHHHHHHHHHcCCC------CEEEEEcCCHHHHHHHHHHHHH
Confidence 489999999999999887654321 2589999999998877776643
No 167
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=78.78 E-value=8.9 Score=35.30 Aligned_cols=50 Identities=14% Similarity=0.139 Sum_probs=37.2
Q ss_pred cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcccccc
Q 021589 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDE 216 (310)
Q Consensus 161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~ 216 (310)
+.-.+|||||+|-...-+...+. | ...|..+|++|.-.+.=+++..+...
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~--~----~~~~latDiNp~A~~~Tl~TA~~n~~ 93 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIG--P----QALYLATDINPEALEATLETARCNRV 93 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcC--C----CceEEEecCCHHHHHHHHHHHHhcCC
Confidence 45789999999987766554432 2 24699999999998887777766443
No 168
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=78.60 E-value=5.8 Score=40.01 Aligned_cols=46 Identities=11% Similarity=0.052 Sum_probs=36.3
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~ 213 (310)
-.|+|+|||+|..+..+.+.+.. .-+++-+|+|+.+.+.-++++..
T Consensus 252 ~~VLDlgaG~G~kt~~la~~~~~------~~~V~avD~s~~~l~~~~~~~~~ 297 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAELMQN------RGQITAVDRYPQKLEKIRSHASA 297 (445)
T ss_pred CEEEEECCCCCHHHHHHHHHhCC------CcEEEEEECCHHHHHHHHHHHHH
Confidence 48999999999988877765532 12689999999998877777643
No 169
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=78.53 E-value=6.2 Score=36.12 Aligned_cols=38 Identities=16% Similarity=-0.059 Sum_probs=29.4
Q ss_pred CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHH
Q 021589 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKL 206 (310)
Q Consensus 160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~ 206 (310)
..-+|+++|||.|.-|.-+.+. ..+++-||+||.-.+.
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~---------G~~V~avD~s~~Ai~~ 74 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQ---------GHEVLGVELSELAVEQ 74 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhC---------CCeEEEEccCHHHHHH
Confidence 3359999999999988776532 1479999999986664
No 170
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=78.37 E-value=6.4 Score=36.58 Aligned_cols=47 Identities=13% Similarity=0.141 Sum_probs=39.1
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcccc
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCM 214 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~ 214 (310)
-.|+|||.+.|.=+.-++..+. + .-+++-||.+|.+.+.-++.++..
T Consensus 61 k~iLEiGT~~GySal~mA~~l~---~---~g~l~tiE~~~e~~~~A~~n~~~a 107 (219)
T COG4122 61 KRILEIGTAIGYSALWMALALP---D---DGRLTTIERDEERAEIARENLAEA 107 (219)
T ss_pred ceEEEeecccCHHHHHHHhhCC---C---CCeEEEEeCCHHHHHHHHHHHHHc
Confidence 4999999999998888877653 2 238999999999999999988753
No 171
>PLN02672 methionine S-methyltransferase
Probab=78.03 E-value=3.1 Score=46.89 Aligned_cols=44 Identities=20% Similarity=0.213 Sum_probs=35.9
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
.+|+|+|||+|.++..+.... |. .+++.||+||...+.-++++.
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~---~~----~~v~avDis~~Al~~A~~Na~ 163 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKW---LP----SKVYGLDINPRAVKVAWINLY 163 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHC---CC----CEEEEEECCHHHHHHHHHHHH
Confidence 489999999999999887653 22 379999999999988777664
No 172
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=77.94 E-value=6.6 Score=39.47 Aligned_cols=46 Identities=11% Similarity=0.058 Sum_probs=36.4
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~ 213 (310)
-+|+|+|||+|..+..+++.+.. ..+++-||+|+...+.-++++..
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~~------~~~v~avDi~~~~l~~~~~n~~~ 297 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLKN------TGKVVALDIHEHKLKLIEENAKR 297 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCC------CCEEEEEeCCHHHHHHHHHHHHH
Confidence 48999999999999998876521 13799999999988777766643
No 173
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=77.89 E-value=5.9 Score=36.13 Aligned_cols=37 Identities=16% Similarity=-0.050 Sum_probs=29.4
Q ss_pred cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHH
Q 021589 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKL 206 (310)
Q Consensus 161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~ 206 (310)
.-+|+++|||.|.-|.-+.+. . .+++-||+||...+.
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~----G-----~~V~gvD~S~~Ai~~ 71 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQ----G-----HRVLGVELSEIAVEQ 71 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhC----C-----CeEEEEeCCHHHHHH
Confidence 359999999999988776432 1 369999999998774
No 174
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=77.66 E-value=6.4 Score=39.44 Aligned_cols=45 Identities=16% Similarity=0.130 Sum_probs=36.6
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~ 213 (310)
-+|+|+|||.|..+..+++.+. .-+++-+|+|+.+.+..++++..
T Consensus 240 ~~VLDlcag~G~kt~~la~~~~-------~~~v~a~D~~~~~l~~~~~n~~r 284 (426)
T TIGR00563 240 ETILDACAAPGGKTTHILELAP-------QAQVVALDIHEHRLKRVYENLKR 284 (426)
T ss_pred CeEEEeCCCccHHHHHHHHHcC-------CCeEEEEeCCHHHHHHHHHHHHH
Confidence 5899999999999998887642 13799999999998877777653
No 175
>PRK00536 speE spermidine synthase; Provisional
Probab=77.38 E-value=7.2 Score=37.11 Aligned_cols=62 Identities=10% Similarity=0.120 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccc
Q 021589 140 MFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMD 215 (310)
Q Consensus 140 ~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~ 215 (310)
+|=|||+-=.+. -.|.|-+|+=+|+|.|..++.||++ |+ ++++||+.+...+.-++.|....
T Consensus 57 iYHEmLvHppl~-----~h~~pk~VLIiGGGDGg~~REvLkh----~~-----~v~mVeID~~Vv~~~k~~lP~~~ 118 (262)
T PRK00536 57 IESELLAHMGGC-----TKKELKEVLIVDGFDLELAHQLFKY----DT-----HVDFVQADEKILDSFISFFPHFH 118 (262)
T ss_pred hHHHHHHHHHHh-----hCCCCCeEEEEcCCchHHHHHHHCc----CC-----eeEEEECCHHHHHHHHHHCHHHH
Confidence 677777654432 2455669999999999999999876 32 79999999999998888776543
No 176
>KOG2811 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.07 E-value=4.4 Score=40.72 Aligned_cols=36 Identities=28% Similarity=0.269 Sum_probs=25.7
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecCh
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSP 201 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP 201 (310)
...||+|||+|.|+.-|-.++..- +++ .+++||..-
T Consensus 184 ~~~vEFGAGrg~Ls~~vs~~l~~~-~~~---l~vlvdR~s 219 (420)
T KOG2811|consen 184 SCFVEFGAGRGELSRWVSDCLQIQ-NVY---LFVLVDRKS 219 (420)
T ss_pred ceEEEecCCchHHHHHHHHHhccc-cEE---EEEeecccc
Confidence 689999999999999888776431 221 255677553
No 177
>PLN03075 nicotianamine synthase; Provisional
Probab=76.26 E-value=12 Score=36.30 Aligned_cols=47 Identities=13% Similarity=0.215 Sum_probs=36.3
Q ss_pred cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
+-+|+|+|+|.|-+..-++... .+|+ .+++=+|++|.+.+..++.+.
T Consensus 124 p~~VldIGcGpgpltaiilaa~-~~p~----~~~~giD~d~~ai~~Ar~~~~ 170 (296)
T PLN03075 124 PTKVAFVGSGPLPLTSIVLAKH-HLPT----TSFHNFDIDPSANDVARRLVS 170 (296)
T ss_pred CCEEEEECCCCcHHHHHHHHHh-cCCC----CEEEEEeCCHHHHHHHHHHhh
Confidence 4589999999998877665432 2343 479999999999998888774
No 178
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=75.06 E-value=10 Score=37.06 Aligned_cols=47 Identities=9% Similarity=0.077 Sum_probs=34.8
Q ss_pred CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (310)
Q Consensus 160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~ 213 (310)
...+++|||+|+|-++.-+... .+ ..+++.+|++|...+.-++.+..
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~---~~----~~~~~atDId~~Al~~A~~Nv~~ 160 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVH---EY----GWRFVGSDIDPQALASAQAIISA 160 (321)
T ss_pred CCceEEEecCCccHHHHHHHhh---CC----CCEEEEEeCCHHHHHHHHHHHHh
Confidence 4579999999999766544322 22 24799999999998888877754
No 179
>PTZ00357 methyltransferase; Provisional
Probab=74.86 E-value=15 Score=40.17 Aligned_cols=39 Identities=33% Similarity=0.479 Sum_probs=32.7
Q ss_pred cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChh
Q 021589 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPT 202 (310)
Q Consensus 161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~ 202 (310)
.+.|+=+|||||-|....|++++... -+++++.||.+|.
T Consensus 701 ~vVImVVGAGRGPLVdraLrAak~~g---vkVrIyAVEKNPp 739 (1072)
T PTZ00357 701 TLHLVLLGCGRGPLIDECLHAVSALG---VRLRIFAIEKNLP 739 (1072)
T ss_pred eEEEEEEcCCccHHHHHHHHHHHHcC---CcEEEEEEecCcc
Confidence 46899999999999999999986532 2578999999955
No 180
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=73.12 E-value=9.7 Score=37.99 Aligned_cols=66 Identities=8% Similarity=0.091 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHcCCC-CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589 142 GEMVGVWAMCLWEQMGQP-NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (310)
Q Consensus 142 Ge~Ia~~~~~~w~~~g~p-~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~ 213 (310)
..-|+.-+++.+.....+ .+++|+|+.+|+|.++.-.+.... . .-+++++|++|...+..++++..
T Consensus 25 nRDlsv~~~~~~~~~~~~~~~~~vLD~faGsG~rgir~a~e~~---g---a~~Vv~nD~n~~Av~~i~~N~~~ 91 (374)
T TIGR00308 25 NRDLSVTCIQAFDNLYGKECYINIADALSASGIRAIRYAHEIE---G---VREVFANDINPKAVESIKNNVEY 91 (374)
T ss_pred cccHHHHHHHHHHHhhCCcCCCEEEECCCchhHHHHHHHhhCC---C---CCEEEEEeCCHHHHHHHHHHHHH
Confidence 333444444444332221 247999999999999987765431 1 13699999999999988887743
No 181
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=71.58 E-value=13 Score=37.04 Aligned_cols=44 Identities=14% Similarity=0.132 Sum_probs=34.5
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
..|+|++||+|.++.-+.... + ..+++.+|++|...+.-++++.
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~---~----~~~V~a~Din~~Av~~a~~N~~ 102 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALET---G----VEKVTLNDINPDAVELIKKNLE 102 (382)
T ss_pred CEEEECCCcccHHHHHHHHHC---C----CCEEEEEeCCHHHHHHHHHHHH
Confidence 489999999999997765542 1 1369999999999887777664
No 182
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=71.45 E-value=4.7 Score=38.32 Aligned_cols=42 Identities=21% Similarity=0.405 Sum_probs=31.6
Q ss_pred cCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHH
Q 021589 156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQK 205 (310)
Q Consensus 156 ~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~ 205 (310)
.|.-.+..++|||||-|...++||.+-. -+..+||+.+....
T Consensus 46 A~~~~~~~v~eIgPgpggitR~il~a~~--------~RL~vVE~D~RFip 87 (326)
T KOG0821|consen 46 AGNLTNAYVYEIGPGPGGITRSILNADV--------ARLLVVEKDTRFIP 87 (326)
T ss_pred ccccccceeEEecCCCCchhHHHHhcch--------hheeeeeeccccCh
Confidence 3444556899999999999999997631 15778888876654
No 183
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=70.97 E-value=9.4 Score=38.54 Aligned_cols=46 Identities=13% Similarity=0.083 Sum_probs=36.7
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~ 213 (310)
-+|+|+|||+|..+..++..+.. .-+++-+|+|+...+.-++++..
T Consensus 239 ~~VLD~cagpGgkt~~la~~~~~------~g~V~a~Dis~~rl~~~~~n~~r 284 (431)
T PRK14903 239 LRVLDTCAAPGGKTTAIAELMKD------QGKILAVDISREKIQLVEKHAKR 284 (431)
T ss_pred CEEEEeCCCccHHHHHHHHHcCC------CCEEEEEECCHHHHHHHHHHHHH
Confidence 48999999999999988776421 13689999999998877776653
No 184
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=70.75 E-value=12 Score=37.65 Aligned_cols=46 Identities=13% Similarity=0.052 Sum_probs=35.8
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~ 213 (310)
-+|+|+|||.|..+..+.+.... .-+++-+|+++.+.+.-++++..
T Consensus 254 ~~VLDl~ag~G~kt~~la~~~~~------~g~v~a~D~~~~rl~~~~~n~~r 299 (434)
T PRK14901 254 EVILDACAAPGGKTTHIAELMGD------QGEIWAVDRSASRLKKLQENAQR 299 (434)
T ss_pred CEEEEeCCCCchhHHHHHHHhCC------CceEEEEcCCHHHHHHHHHHHHH
Confidence 58999999999999988765421 13689999999888776666643
No 185
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=70.14 E-value=8.2 Score=34.46 Aligned_cols=67 Identities=19% Similarity=0.211 Sum_probs=42.9
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 133 TSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 133 TSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
|=|....+ =|+|..++... . . ....++++=||+|.|+..-|..-. -+.++||.++...+.-++++.
T Consensus 21 ~RPT~drv-realFniL~~~-~-~---~g~~vLDLFaGSGalGlEALSRGA--------~~v~fVE~~~~a~~~i~~N~~ 86 (183)
T PF03602_consen 21 TRPTTDRV-REALFNILQPR-N-L---EGARVLDLFAGSGALGLEALSRGA--------KSVVFVEKNRKAIKIIKKNLE 86 (183)
T ss_dssp S-SSSHHH-HHHHHHHHHCH---H---TT-EEEETT-TTSHHHHHHHHTT---------SEEEEEES-HHHHHHHHHHHH
T ss_pred cCCCcHHH-HHHHHHHhccc-c-c---CCCeEEEcCCccCccHHHHHhcCC--------CeEEEEECCHHHHHHHHHHHH
Confidence 33444433 56666666443 1 1 225999999999999977664421 269999999999988888776
Q ss_pred c
Q 021589 213 C 213 (310)
Q Consensus 213 ~ 213 (310)
.
T Consensus 87 ~ 87 (183)
T PF03602_consen 87 K 87 (183)
T ss_dssp H
T ss_pred H
Confidence 4
No 186
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=67.89 E-value=10 Score=39.04 Aligned_cols=70 Identities=23% Similarity=0.368 Sum_probs=54.4
Q ss_pred CCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHH
Q 021589 128 EGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ 207 (310)
Q Consensus 128 ~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q 207 (310)
+|+|||+.+|+.+..++|.. .+. -+|+.-=||+|.|.....+++.... ..+.++-.|+.+....+-
T Consensus 165 ~GEfyTP~~v~~liv~~l~~----------~~~-~~i~DpacGsgg~l~~a~~~~~~~~---~~~~~yGqE~~~~t~~l~ 230 (489)
T COG0286 165 AGEFYTPREVSELIVELLDP----------EPR-NSIYDPACGSGGMLLQAAKYLKRHQ---DEIFIYGQEINDTTYRLA 230 (489)
T ss_pred CCccCChHHHHHHHHHHcCC----------CCC-CeecCCCCchhHHHHHHHHHHHhhc---cceeEEEEeCCHHHHHHH
Confidence 49999999999988777533 122 2899999999999999888885422 257899999998887776
Q ss_pred HHhc
Q 021589 208 HHNL 211 (310)
Q Consensus 208 ~e~L 211 (310)
+-.+
T Consensus 231 ~mN~ 234 (489)
T COG0286 231 KMNL 234 (489)
T ss_pred HHHH
Confidence 6555
No 187
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=67.15 E-value=21 Score=33.62 Aligned_cols=64 Identities=13% Similarity=0.074 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589 137 VSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (310)
Q Consensus 137 Is~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~ 213 (310)
+++.-|++|...+ ++-.| -+|+|+|.+.|.=+.-+.+.+. + .-+++-+|.+|...+.-++.+..
T Consensus 63 ~~~~~g~lL~~l~-----~~~~a--k~iLEiGT~~GySal~la~al~--~----~g~v~tiE~~~~~~~~Ar~~~~~ 126 (247)
T PLN02589 63 TSADEGQFLNMLL-----KLINA--KNTMEIGVYTGYSLLATALALP--E----DGKILAMDINRENYELGLPVIQK 126 (247)
T ss_pred cCHHHHHHHHHHH-----HHhCC--CEEEEEeChhhHHHHHHHhhCC--C----CCEEEEEeCCHHHHHHHHHHHHH
Confidence 3455565553332 22233 3899999999988777766542 1 24799999999998888877753
No 188
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=66.07 E-value=6.1 Score=38.07 Aligned_cols=40 Identities=18% Similarity=0.372 Sum_probs=33.5
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHh
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN 210 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~ 210 (310)
..|+++|||.|-|...+-|.- -.+.-||+|+.+.+.-++.
T Consensus 91 ~~ilDvGCGgGLLSepLArlg---------a~V~GID~s~~~V~vA~~h 130 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLG---------AQVTGIDASDDMVEVANEH 130 (282)
T ss_pred ceEEEeccCccccchhhHhhC---------CeeEeecccHHHHHHHHHh
Confidence 369999999999998876653 2588999999999987776
No 189
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=65.24 E-value=8 Score=36.93 Aligned_cols=40 Identities=23% Similarity=0.310 Sum_probs=28.8
Q ss_pred cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHH
Q 021589 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH 209 (310)
Q Consensus 161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e 209 (310)
--+++++|||||-+...| |-+.. +..=||+|..|.++-.+
T Consensus 126 F~~~lDLGCGTGL~G~~l-R~~a~--------~ltGvDiS~nMl~kA~e 165 (287)
T COG4976 126 FRRMLDLGCGTGLTGEAL-RDMAD--------RLTGVDISENMLAKAHE 165 (287)
T ss_pred cceeeecccCcCcccHhH-HHHHh--------hccCCchhHHHHHHHHh
Confidence 348999999999877654 33221 35678999999876665
No 190
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=64.91 E-value=5.5 Score=37.10 Aligned_cols=46 Identities=22% Similarity=0.242 Sum_probs=34.3
Q ss_pred CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (310)
Q Consensus 160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~ 213 (310)
...+.+|+|||=|+.+.++|-.. + -++-|||..+.+.+.-++.|..
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~--f------~~VDlVEp~~~Fl~~a~~~l~~ 100 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV--F------DEVDLVEPVEKFLEQAKEYLGK 100 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---------SEEEEEES-HHHHHHHHHHTCC
T ss_pred CcceEEecccccchhHHHHHHHh--c------CEeEEeccCHHHHHHHHHHhcc
Confidence 45689999999999999987421 1 2689999999999988887765
No 191
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=64.28 E-value=16 Score=37.80 Aligned_cols=36 Identities=19% Similarity=0.127 Sum_probs=27.8
Q ss_pred cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhh
Q 021589 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTL 203 (310)
Q Consensus 161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~L 203 (310)
.-.+||||||.|.++..+-. .+|+ ..|+-||++..-
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~---~~p~----~~~iGiE~~~~~ 383 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAK---MNPD----ALFIGVEVYLNG 383 (506)
T ss_pred CceEEEECCCchHHHHHHHH---hCCC----CCEEEEEeeHHH
Confidence 45899999999998776643 4676 368999998764
No 192
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=64.27 E-value=14 Score=35.30 Aligned_cols=39 Identities=15% Similarity=0.228 Sum_probs=28.0
Q ss_pred eEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHh
Q 021589 163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN 210 (310)
Q Consensus 163 ~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~ 210 (310)
.++|+|||+| .|.-++... + + +++-+|+|+.+-++-++.
T Consensus 36 ~a~DvG~G~G-qa~~~iae~---~---k--~VIatD~s~~mL~~a~k~ 74 (261)
T KOG3010|consen 36 LAWDVGTGNG-QAARGIAEH---Y---K--EVIATDVSEAMLKVAKKH 74 (261)
T ss_pred eEEEeccCCC-cchHHHHHh---h---h--hheeecCCHHHHHHhhcC
Confidence 8999999999 454444332 1 1 588899999988766653
No 193
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=63.79 E-value=49 Score=35.62 Aligned_cols=69 Identities=14% Similarity=0.093 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHcCC-CCcceEEEecCCchHHHHHHHHHHh-cCcCcc------------------------------
Q 021589 142 GEMVGVWAMCLWEQMGQ-PNRVNLVELGPGRGTLMADLLRGAS-KFKNFT------------------------------ 189 (310)
Q Consensus 142 Ge~Ia~~~~~~w~~~g~-p~~l~IvElGaG~GtLa~DIL~~l~-~~p~~~------------------------------ 189 (310)
-|.||..++.. .|. .....+++-+||+||+.-.-..... ..|.+.
T Consensus 174 ~etlAaa~l~~---a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~ 250 (702)
T PRK11783 174 KENLAAAILLR---SGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARA 250 (702)
T ss_pred cHHHHHHHHHH---cCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhh
Confidence 56777776643 233 1235899999999999855433221 122110
Q ss_pred ----ccceEEEEecChhhHHHHHHhccc
Q 021589 190 ----ESLHIHLVECSPTLQKLQHHNLKC 213 (310)
Q Consensus 190 ----~~l~y~iVE~SP~Lr~~Q~e~L~~ 213 (310)
...+++-+|+++.+.+.-++++..
T Consensus 251 ~~~~~~~~i~G~Did~~av~~A~~N~~~ 278 (702)
T PRK11783 251 GLAELPSKFYGSDIDPRVIQAARKNARR 278 (702)
T ss_pred cccccCceEEEEECCHHHHHHHHHHHHH
Confidence 123689999999999988887764
No 194
>PF14737 DUF4470: Domain of unknown function (DUF4470)
Probab=63.27 E-value=16 Score=29.16 Aligned_cols=52 Identities=19% Similarity=0.245 Sum_probs=38.8
Q ss_pred CCCCcceEEEecCCchHHHHHHHHHHhcCcCcc--ccceEEEEecChhhHHHHHHhc
Q 021589 157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFT--ESLHIHLVECSPTLQKLQHHNL 211 (310)
Q Consensus 157 g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~--~~l~y~iVE~SP~Lr~~Q~e~L 211 (310)
....++.|+=+|+|..+ +||..+...+.-+ ..+++++.|.+|....++-=.|
T Consensus 20 ~~~~~~~iLl~G~gD~R---hvl~Tl~~~~~~~~~~~l~~~l~D~~~~vlARnlLlL 73 (100)
T PF14737_consen 20 PPDEDLNILLLGCGDLR---HVLKTLASLPRSYDGRKLHFTLNDINPEVLARNLLLL 73 (100)
T ss_pred CCCCCceEEEecCccHH---HHHHHHHhcccCcccceeEEEEecCcHHHHHHHHHHH
Confidence 34578999999999987 6677665444433 2589999999999888766444
No 195
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=63.10 E-value=11 Score=37.92 Aligned_cols=43 Identities=12% Similarity=0.109 Sum_probs=32.2
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
-+|+|+|||+|.++...+. . .+-+++.||+|+...+.-++++.
T Consensus 222 ~rVLDlfsgtG~~~l~aa~---~-----ga~~V~~VD~s~~al~~a~~N~~ 264 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALM---G-----GCSQVVSVDTSQEALDIARQNVE 264 (396)
T ss_pred CeEEEeccCCCHHHHHHHh---C-----CCCEEEEEECCHHHHHHHHHHHH
Confidence 4899999999998654331 1 12378999999999887777664
No 196
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=62.50 E-value=10 Score=40.73 Aligned_cols=43 Identities=19% Similarity=0.159 Sum_probs=34.8
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
-+|+|+|||+|.++..++..- +-+++.||+|+...+.-++++.
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~G--------a~~V~~vD~s~~al~~a~~N~~ 582 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGG--------AKSTTTVDMSNTYLEWAERNFA 582 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCC--------CCEEEEEeCCHHHHHHHHHHHH
Confidence 389999999999998876531 1269999999999987777664
No 197
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=61.18 E-value=28 Score=33.70 Aligned_cols=46 Identities=15% Similarity=0.078 Sum_probs=37.9
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~ 213 (310)
..+|++++|.|..+..||+.+. ...+++-+|.+|.+.+.-+++|..
T Consensus 21 ~~vlD~TlG~GGhS~~il~~~~------~~g~VigiD~D~~al~~ak~~L~~ 66 (296)
T PRK00050 21 GIYVDGTFGGGGHSRAILERLG------PKGRLIAIDRDPDAIAAAKDRLKP 66 (296)
T ss_pred CEEEEeCcCChHHHHHHHHhCC------CCCEEEEEcCCHHHHHHHHHhhcc
Confidence 4899999999999999998652 114689999999999888887753
No 198
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=60.94 E-value=29 Score=36.62 Aligned_cols=68 Identities=18% Similarity=0.136 Sum_probs=45.2
Q ss_pred HHHHHHHHHH-----HHHHHcCCCCcceEEEecCCchHHHHHHHHHHhc----Cc-CccccceEEEEecChhhHHHHHH
Q 021589 141 FGEMVGVWAM-----CLWEQMGQPNRVNLVELGPGRGTLMADLLRGASK----FK-NFTESLHIHLVECSPTLQKLQHH 209 (310)
Q Consensus 141 FGe~Ia~~~~-----~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~----~p-~~~~~l~y~iVE~SP~Lr~~Q~e 209 (310)
+.|+...++. +.|...+ ...++|+|+|=|+|......++.+++ .| ....+|+|+-+|.-|-.++.-++
T Consensus 34 ~~e~~~~f~~~~~l~~r~~~~~-~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~ 111 (662)
T PRK01747 34 LEETRYVFLGGNGLPERWAEHP-RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLAR 111 (662)
T ss_pred HHHhhhhhhcCCCHHHHHhcCC-CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHH
Confidence 5666665543 2343322 24599999999999998888887742 23 23457999999987755444443
No 199
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=59.70 E-value=18 Score=33.34 Aligned_cols=40 Identities=13% Similarity=0.208 Sum_probs=30.0
Q ss_pred eEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHH
Q 021589 163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH 209 (310)
Q Consensus 163 ~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e 209 (310)
.|+|||+|+|.=+..+-.. +|. +++.--|..+.++.--+.
T Consensus 28 ~vLEiaSGtGqHa~~FA~~---lP~----l~WqPSD~~~~~~~sI~a 67 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQA---LPH----LTWQPSDPDDNLRPSIRA 67 (204)
T ss_pred eEEEEcCCccHHHHHHHHH---CCC----CEEcCCCCChHHHhhHHH
Confidence 6999999999988777554 454 578888888888644333
No 200
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=57.99 E-value=32 Score=34.16 Aligned_cols=57 Identities=21% Similarity=0.293 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEec
Q 021589 141 FGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVEC 199 (310)
Q Consensus 141 FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~ 199 (310)
||...|++. +.+.+.....++||++|-|.|.-=..+|+.+...|.-...++++-|+.
T Consensus 93 fa~~taNqa--IleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~ 149 (374)
T PF03514_consen 93 FAHFTANQA--ILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGP 149 (374)
T ss_pred hhhhchhHH--HHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccC
Confidence 566777765 344444446799999999999999999999976554445789999988
No 201
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=56.23 E-value=20 Score=31.62 Aligned_cols=38 Identities=26% Similarity=0.472 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCcceEE--EecCCchHHHHHHHHHHh
Q 021589 138 SQMFGEMVGVWAMCLWEQMGQPNRVNLV--ELGPGRGTLMADLLRGAS 183 (310)
Q Consensus 138 s~~FGe~Ia~~~~~~w~~~g~p~~l~Iv--ElGaG~GtLa~DIL~~l~ 183 (310)
..-||+.+|..+ .++...++ ++|||.=||++.|++.+.
T Consensus 11 t~~lg~~l~~~l--------~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg 50 (149)
T COG0802 11 TLALGERLAEAL--------KAGDVVLLSGDLGAGKTTLVRGIAKGLG 50 (149)
T ss_pred HHHHHHHHHhhC--------CCCCEEEEEcCCcCChHHHHHHHHHHcC
Confidence 456788777765 22323333 899999999999999985
No 202
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=54.79 E-value=37 Score=31.61 Aligned_cols=48 Identities=10% Similarity=-0.045 Sum_probs=34.2
Q ss_pred HHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHH
Q 021589 153 WEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH 209 (310)
Q Consensus 153 w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e 209 (310)
|..+..+..-+|+-.|||+|.-|.-+.+. ..+++-||+||.-.+...+
T Consensus 36 ~~~l~~~~~~rvLvPgCGkg~D~~~LA~~---------G~~V~GvDlS~~Ai~~~~~ 83 (226)
T PRK13256 36 FSKLNINDSSVCLIPMCGCSIDMLFFLSK---------GVKVIGIELSEKAVLSFFS 83 (226)
T ss_pred HHhcCCCCCCeEEEeCCCChHHHHHHHhC---------CCcEEEEecCHHHHHHHHH
Confidence 33444444469999999999977766442 1369999999988876544
No 203
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=54.00 E-value=24 Score=33.98 Aligned_cols=47 Identities=15% Similarity=0.250 Sum_probs=37.8
Q ss_pred CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (310)
Q Consensus 160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~ 213 (310)
.+..++++||.+|+|...|-..+.. ..+.=|||.|.|.+.-++.+.-
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~-------r~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGP-------RRILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhcc-------ceeeEeeccHHHHHHHHHhccc
Confidence 3468999999999999999776532 2488899999999988877653
No 204
>PF11784 DUF3320: Protein of unknown function (DUF3320); InterPro: IPR021754 This family is conserved in Proteobacteria and Chlorobi families. Many members are annotated as being putative DNA helicase-related proteins.
Probab=53.68 E-value=24 Score=25.32 Aligned_cols=37 Identities=19% Similarity=0.443 Sum_probs=29.9
Q ss_pred CCCCCCCCchHHHHHHHHHHHHhcCCcccHHHHHHHhh
Q 021589 74 PEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVL 111 (310)
Q Consensus 74 ~~~~~~~~~~~~L~~~i~~~I~~~~GpIsf~dFM~~aL 111 (310)
|+.-+.+.....|.+.|.+.++.. |||..+.-.+..+
T Consensus 1 p~~f~~~~~~~~L~~~i~~Iv~~E-gPI~~~~L~~Ri~ 37 (52)
T PF11784_consen 1 PDDFYHPEYRPQLARMIRQIVEVE-GPIHEDELARRIA 37 (52)
T ss_pred CcchhhhhHHHHHHHHHHHHHHHc-CCccHHHHHHHHH
Confidence 455666677889999999999997 9999988776655
No 205
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=53.16 E-value=43 Score=32.74 Aligned_cols=46 Identities=20% Similarity=0.279 Sum_probs=33.6
Q ss_pred cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
-..|+|-|-|+|.|...|.++..-.. +.+-.|.-....+.-++-+.
T Consensus 106 GsvV~EsGTGSGSlShaiaraV~ptG------hl~tfefH~~Ra~ka~eeFr 151 (314)
T KOG2915|consen 106 GSVVLESGTGSGSLSHAIARAVAPTG------HLYTFEFHETRAEKALEEFR 151 (314)
T ss_pred CCEEEecCCCcchHHHHHHHhhCcCc------ceEEEEecHHHHHHHHHHHH
Confidence 35999999999999999999874222 56777886666555555444
No 206
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=51.86 E-value=38 Score=31.62 Aligned_cols=60 Identities=22% Similarity=0.305 Sum_probs=40.8
Q ss_pred ecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 021589 132 ITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (310)
Q Consensus 132 iTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L 211 (310)
.|-.|-=-+|-++|++-.. -...++|||+|-|+.---.+ +-+++-||..|.-.....++|
T Consensus 15 L~D~eRlavF~~ai~~va~-----------d~~~DLGaGsGiLs~~Aa~~---------A~rViAiE~dPk~a~~a~eN~ 74 (252)
T COG4076 15 LRDVERLAVFTSAIAEVAE-----------DTFADLGAGSGILSVVAAHA---------AERVIAIEKDPKRARLAEENL 74 (252)
T ss_pred hhhHHHHHHHHHHHHHHhh-----------hceeeccCCcchHHHHHHhh---------hceEEEEecCcHHHHHhhhcC
Confidence 3333434566666665431 27899999999876532222 136899999999998888886
No 207
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=51.15 E-value=1.1e+02 Score=26.84 Aligned_cols=51 Identities=18% Similarity=0.171 Sum_probs=34.0
Q ss_pred ceEEEecCCchHHHHHHHHHHhc-CcCcc--ccceEEEEecChhhHHHHHHhccc
Q 021589 162 VNLVELGPGRGTLMADLLRGASK-FKNFT--ESLHIHLVECSPTLQKLQHHNLKC 213 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~-~p~~~--~~l~y~iVE~SP~Lr~~Q~e~L~~ 213 (310)
-.|++-=||+||+.-.-...... .| .. +.++++-+|+++...+.-++++..
T Consensus 30 ~~vlDP~CGsGtiliEaa~~~~~~~~-~~~~~~~~~~g~Di~~~~v~~a~~N~~~ 83 (179)
T PF01170_consen 30 DVVLDPFCGSGTILIEAALMGANIPP-LNDINELKIIGSDIDPKAVRGARENLKA 83 (179)
T ss_dssp S-EEETT-TTSHHHHHHHHHHTTTST-TTH-CH--EEEEESSHHHHHHHHHHHHH
T ss_pred CEEeecCCCCCHHHHHHHHHhhCccc-ccccccccEEecCCCHHHHHHHHHHHHh
Confidence 48999999999988665444433 23 11 134588999999999888887754
No 208
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=51.10 E-value=39 Score=24.91 Aligned_cols=41 Identities=24% Similarity=0.322 Sum_probs=26.7
Q ss_pred EEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 021589 164 LVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (310)
Q Consensus 164 IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L 211 (310)
++++|||.|... .+..+.. .. ..++-+|.++.+...++...
T Consensus 52 ~ld~~~g~g~~~--~~~~~~~--~~---~~~~~~d~~~~~~~~~~~~~ 92 (257)
T COG0500 52 VLDIGCGTGRLA--LLARLGG--RG---AYVVGVDLSPEMLALARARA 92 (257)
T ss_pred eEEecCCcCHHH--HHHHhCC--CC---ceEEEEeCCHHHHHHHHhhh
Confidence 999999999987 3322211 11 24555899998887755433
No 209
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=50.26 E-value=7.7 Score=39.11 Aligned_cols=42 Identities=24% Similarity=0.471 Sum_probs=29.4
Q ss_pred cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHH
Q 021589 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH 208 (310)
Q Consensus 161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~ 208 (310)
+-.|++.|+|-||-+-.. -..+|++- +.+|||.||.|+++=-
T Consensus 114 pqsiLDvG~GPgtgl~A~---n~i~Pdl~---sa~ile~sp~lrkV~~ 155 (484)
T COG5459 114 PQSILDVGAGPGTGLWAL---NDIWPDLK---SAVILEASPALRKVGD 155 (484)
T ss_pred cchhhccCCCCchhhhhh---cccCCCch---hhhhhccCHHHHHHHH
Confidence 447999999988843322 22357653 4789999999998644
No 210
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=46.81 E-value=29 Score=35.36 Aligned_cols=45 Identities=27% Similarity=0.518 Sum_probs=35.2
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHH--Hhccc
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH--HNLKC 213 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~--e~L~~ 213 (310)
-.++=+|+|.|--++.+|+ +|.+ .++++||..|.+.+.-+ ..|..
T Consensus 291 ~~vLvlGGGDGLAlRellk----yP~~---~qI~lVdLDP~miela~~~~vlr~ 337 (508)
T COG4262 291 RSVLVLGGGDGLALRELLK----YPQV---EQITLVDLDPRMIELASHATVLRA 337 (508)
T ss_pred ceEEEEcCCchHHHHHHHh----CCCc---ceEEEEecCHHHHHHhhhhhHhhh
Confidence 4788999999998777765 4654 47999999999999777 44443
No 211
>PTZ00387 epsilon tubulin; Provisional
Probab=45.65 E-value=94 Score=31.99 Aligned_cols=74 Identities=19% Similarity=0.142 Sum_probs=44.4
Q ss_pred hcCCCCcccCCCCCCCCCCCeecC-CChhHHHHHHHHHHHHHHHHHcCCCCcce-EEEecCCch-HHHHHHHHHHhc-Cc
Q 021589 111 LTNPKAGFYINRDVFGAEGDFITS-PEVSQMFGEMVGVWAMCLWEQMGQPNRVN-LVELGPGRG-TLMADLLRGASK-FK 186 (310)
Q Consensus 111 LY~P~~GYY~~~~~~G~~GDFiTS-peIs~~FGe~Ia~~~~~~w~~~g~p~~l~-IvElGaG~G-tLa~DIL~~l~~-~p 186 (310)
||+|+.=.+. +-|+++.|-.. ...++-+.+.+...+.+..++.+...-|. +--+|+|+| -++.-||..++. +|
T Consensus 85 ~f~~~~~i~~---~~GaGNnwa~G~~~~g~~~~d~~~d~Ir~~~E~cD~l~gf~i~~slgGGTGSGlgs~lle~l~d~y~ 161 (465)
T PTZ00387 85 LFDENFFVSD---VSGAGNNWAVGHMEYGDKYIDSISESVRRQVEQCDSLQSFFLMHSLGGGTGSGLGTRILGMLEDEFP 161 (465)
T ss_pred ccCccccccc---CCCCCCCcCCCcccccHHHHHHHHHHHHHHHHhccCcceEEEEeecCCCcchhHHHHHHHHHHHhcc
Confidence 5666532222 13555555333 22355666777777777777666554344 448999998 677778888863 55
Q ss_pred C
Q 021589 187 N 187 (310)
Q Consensus 187 ~ 187 (310)
+
T Consensus 162 ~ 162 (465)
T PTZ00387 162 H 162 (465)
T ss_pred c
Confidence 4
No 212
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=45.42 E-value=32 Score=31.92 Aligned_cols=93 Identities=18% Similarity=0.327 Sum_probs=50.3
Q ss_pred cccHHHHHHHhhcCCCCcccCCCCCCCCCCCeecCCChhHHHHHHHHHHHHHHHHH--cCCCCcceEEEecCCchHHHHH
Q 021589 100 PISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQ--MGQPNRVNLVELGPGRGTLMAD 177 (310)
Q Consensus 100 pIsf~dFM~~aLY~P~~GYY~~~~~~G~~GDFiTSpeIs~~FGe~Ia~~~~~~w~~--~g~p~~l~IvElGaG~GtLa~D 177 (310)
.+-..+|++ ++|.-+.-=|.. .|..|+---..+. -+-|..|+.+.-.. .+...+ +|+++|+|+|.|...
T Consensus 14 ~LGtK~yWD-~~Y~~El~Nfr~---hgd~GEvWFg~~a----e~riv~wl~d~~~~~rv~~~A~-~VlDLGtGNG~~L~~ 84 (227)
T KOG1271|consen 14 KLGTKSYWD-AAYELELTNFRE---HGDEGEVWFGEDA----EERIVDWLKDLIVISRVSKQAD-RVLDLGTGNGHLLFQ 84 (227)
T ss_pred ccchHHHHH-HHHHHHHhhccc---CCCccceecCCcH----HHHHHHHHHhhhhhhhhccccc-ceeeccCCchHHHHH
Confidence 366778874 455555444443 3445543211111 12344555443321 122222 999999999998877
Q ss_pred HHHHHhcCcCccccceEEEEecChhhHHHHH
Q 021589 178 LLRGASKFKNFTESLHIHLVECSPTLQKLQH 208 (310)
Q Consensus 178 IL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~ 208 (310)
++.. .|+. ..+=|+-|+.-.++-+
T Consensus 85 L~~e--gf~~-----~L~GvDYs~~AV~LA~ 108 (227)
T KOG1271|consen 85 LAKE--GFQS-----KLTGVDYSEKAVELAQ 108 (227)
T ss_pred HHHh--cCCC-----CccccccCHHHHHHHH
Confidence 7654 2432 2556777877666533
No 213
>KOG1774 consensus Small nuclear ribonucleoprotein E [RNA processing and modification]
Probab=44.84 E-value=15 Score=29.36 Aligned_cols=35 Identities=29% Similarity=0.399 Sum_probs=25.8
Q ss_pred cccHHHHHHHhhcCCCCcccCCC--CCCCC---CCCeecC
Q 021589 100 PISVAEYMEEVLTNPKAGFYINR--DVFGA---EGDFITS 134 (310)
Q Consensus 100 pIsf~dFM~~aLY~P~~GYY~~~--~~~G~---~GDFiTS 134 (310)
-+-|+|||..+|=+-+.=+-.++ ..+|+ +||-||.
T Consensus 43 IvGFDEyMNvVlD~aeev~~k~~~rk~lGRilLKGDnItl 82 (88)
T KOG1774|consen 43 IVGFDEYMNLVLDDAEEVHSKTKSRKELGRILLKGDNITL 82 (88)
T ss_pred EechHHhhhhhhcchhhccccccCCCccccEEEcCCcEEE
Confidence 36899999999987665554432 35786 7999885
No 214
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=44.64 E-value=61 Score=30.55 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=28.5
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhh
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTL 203 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~L 203 (310)
..|+=+||.+||-..+|-+-..... .++-||.||..
T Consensus 75 skVLYLGAasGTTVSHvSDIvg~~G------~VYaVEfs~r~ 110 (229)
T PF01269_consen 75 SKVLYLGAASGTTVSHVSDIVGPDG------VVYAVEFSPRS 110 (229)
T ss_dssp -EEEEETTTTSHHHHHHHHHHTTTS------EEEEEESSHHH
T ss_pred CEEEEecccCCCccchhhhccCCCC------cEEEEEecchh
Confidence 5999999999999999888764222 47889999954
No 215
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=43.98 E-value=12 Score=35.42 Aligned_cols=68 Identities=25% Similarity=0.393 Sum_probs=41.8
Q ss_pred CCCCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhH
Q 021589 125 FGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQ 204 (310)
Q Consensus 125 ~G~~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr 204 (310)
.|++.=|+-|++- |.+++++-= ..| | ..+.+++++|||.|.....+--.+. +++--|.|-.||
T Consensus 85 lgrGsMFifSe~Q---F~klL~i~~-p~w---~-~~~~~lLDlGAGdGeit~~m~p~fe---------evyATElS~tMr 147 (288)
T KOG3987|consen 85 LGRGSMFIFSEEQ---FRKLLVIGG-PAW---G-QEPVTLLDLGAGDGEITLRMAPTFE---------EVYATELSWTMR 147 (288)
T ss_pred cccCceEEecHHH---HHHHHhcCC-Ccc---C-CCCeeEEeccCCCcchhhhhcchHH---------HHHHHHhhHHHH
Confidence 4677788888763 444443210 111 1 1457999999999998776644332 244468888888
Q ss_pred HHHHH
Q 021589 205 KLQHH 209 (310)
Q Consensus 205 ~~Q~e 209 (310)
.+.++
T Consensus 148 ~rL~k 152 (288)
T KOG3987|consen 148 DRLKK 152 (288)
T ss_pred HHHhh
Confidence 75543
No 216
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=43.27 E-value=53 Score=26.98 Aligned_cols=40 Identities=18% Similarity=0.176 Sum_probs=21.9
Q ss_pred EecCCch--HHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHh
Q 021589 166 ELGPGRG--TLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN 210 (310)
Q Consensus 166 ElGaG~G--tLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~ 210 (310)
++||+.| ......+.. ...+ ..+++.+|++|.+.+.-+++
T Consensus 1 DvGA~~G~~~~~~~~~~~-~~~~----~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEK-KCGP----GGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHH-HTS------SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHH-HcCC----CCEEEEEECCHHHHHHHhHH
Confidence 6899999 444433322 1222 24789999999987766666
No 217
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=42.92 E-value=64 Score=32.10 Aligned_cols=77 Identities=22% Similarity=0.294 Sum_probs=48.2
Q ss_pred CC-CCCCeecCCC-hhHHHHHHHHHHHHHHHHH------cCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEE
Q 021589 125 FG-AEGDFITSPE-VSQMFGEMVGVWAMCLWEQ------MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHL 196 (310)
Q Consensus 125 ~G-~~GDFiTSpe-Is~~FGe~Ia~~~~~~w~~------~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~i 196 (310)
.| ..|.|+++-+ .+..|-+.- ..+..++.. .|...-...|++|+|.|+.++.||. .+| ++-+
T Consensus 135 ~G~~l~~~~~~~~~~~~~~~~sm-~~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~---~fp------~ik~ 204 (342)
T KOG3178|consen 135 HGMMLGGYGGADERFSKDFNGSM-SFLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKNLLS---KYP------HIKG 204 (342)
T ss_pred cchhhhhhcccccccHHHHHHHH-HHHHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHHHHH---hCC------CCce
Confidence 47 5788888855 344443321 111122221 1323345899999999999999987 355 3567
Q ss_pred EecChhhHHHHHHhc
Q 021589 197 VECSPTLQKLQHHNL 211 (310)
Q Consensus 197 VE~SP~Lr~~Q~e~L 211 (310)
||.-....-.+++.+
T Consensus 205 infdlp~v~~~a~~~ 219 (342)
T KOG3178|consen 205 INFDLPFVLAAAPYL 219 (342)
T ss_pred eecCHHHHHhhhhhh
Confidence 777777777777766
No 218
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=42.06 E-value=26 Score=34.41 Aligned_cols=34 Identities=15% Similarity=0.246 Sum_probs=27.1
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhh
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTL 203 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~L 203 (310)
-+|+++|||+|..+..+++.- + -.++-||.++..
T Consensus 117 k~VLDIGC~nGY~~frM~~~G---A-----~~ViGiDP~~lf 150 (315)
T PF08003_consen 117 KRVLDIGCNNGYYSFRMLGRG---A-----KSVIGIDPSPLF 150 (315)
T ss_pred CEEEEecCCCcHHHHHHhhcC---C-----CEEEEECCChHH
Confidence 489999999999999887653 1 257889988764
No 219
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=41.82 E-value=32 Score=32.17 Aligned_cols=22 Identities=18% Similarity=0.465 Sum_probs=14.3
Q ss_pred CCCCcceEEEecCCchHHHHHH
Q 021589 157 GQPNRVNLVELGPGRGTLMADL 178 (310)
Q Consensus 157 g~p~~l~IvElGaG~GtLa~DI 178 (310)
..|....|.++|||.+.||..+
T Consensus 69 ~~~~~~viaD~GCGdA~la~~~ 90 (219)
T PF05148_consen 69 KRPKSLVIADFGCGDAKLAKAV 90 (219)
T ss_dssp TS-TTS-EEEES-TT-HHHHH-
T ss_pred hcCCCEEEEECCCchHHHHHhc
Confidence 3566789999999999999664
No 220
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=41.63 E-value=20 Score=38.53 Aligned_cols=42 Identities=33% Similarity=0.655 Sum_probs=34.6
Q ss_pred cHHHHHHHhhcCCCCcccCCC--CCCCCCCCeecC--CChhHHHHH
Q 021589 102 SVAEYMEEVLTNPKAGFYINR--DVFGAEGDFITS--PEVSQMFGE 143 (310)
Q Consensus 102 sf~dFM~~aLY~P~~GYY~~~--~~~G~~GDFiTS--peIs~~FGe 143 (310)
..-+||..=||.|+.|||.+. +..|..|-|||= -||..+.|+
T Consensus 300 ~i~~~l~rel~sp~ggFyss~DAD~~g~EG~~Y~Ws~eEi~~~Lg~ 345 (667)
T COG1331 300 GILDYLLRELYSPEGGFYSSLDADSDGEEGKYYTWSVEELKEVLGE 345 (667)
T ss_pred HHHHHHHHHhcCCCCceeecccccCcccCCCeeecCHHHHHHHhcc
Confidence 345799999999999999984 678999999864 568888883
No 221
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=41.59 E-value=72 Score=29.26 Aligned_cols=101 Identities=17% Similarity=0.131 Sum_probs=52.6
Q ss_pred HHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHH--HHhccccccCCcCccchhhhh
Q 021589 151 CLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ--HHNLKCMDENNANDNVEERTI 228 (310)
Q Consensus 151 ~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q--~e~L~~~~~~~~~~~~~~~~~ 228 (310)
+.|..++.+.+.+|+--|||+|.-|.-+.+. . .+++-||+||.-.+.- ++.+......... .
T Consensus 28 ~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~----G-----~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~-------~ 91 (218)
T PF05724_consen 28 EYLDSLALKPGGRVLVPGCGKGYDMLWLAEQ----G-----HDVVGVDLSPTAIEQAFEENNLEPTVTSVGG-------F 91 (218)
T ss_dssp HHHHHHTTSTSEEEEETTTTTSCHHHHHHHT----T-----EEEEEEES-HHHHHHHHHHCTTEEECTTCTT-------E
T ss_pred HHHHhcCCCCCCeEEEeCCCChHHHHHHHHC----C-----CeEEEEecCHHHHHHHHHHhccCCCcccccc-------e
Confidence 3444445555579999999999865544332 1 3789999999877653 3333221111000 0
Q ss_pred cccCCCCeEEec-ccccCCCC---CCEEEEEecccccccceeE
Q 021589 229 SSLAGTPVSWHA-ALEQVPSG---FPTIIVAHEFYDALPVHQF 267 (310)
Q Consensus 229 ~~~~~~~v~W~~-sleelp~~---~~~vIiANE~fDALPvh~f 267 (310)
.......|.++. ++=+++.. ..-+|+-.=+|=|||-+.-
T Consensus 92 ~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R 134 (218)
T PF05724_consen 92 KRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMR 134 (218)
T ss_dssp EEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGH
T ss_pred eeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHH
Confidence 001122444432 22122221 1357888888999997643
No 222
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=41.48 E-value=62 Score=32.03 Aligned_cols=67 Identities=19% Similarity=0.358 Sum_probs=43.0
Q ss_pred CCChh-HHHHHHHHHH--HHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHH
Q 021589 134 SPEVS-QMFGEMVGVW--AMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ 207 (310)
Q Consensus 134 SpeIs-~~FGe~Ia~~--~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q 207 (310)
+|+|. -.|..+.|+- +....++ ...+.+||.+|||.-+|+..++.... +..+.|+=||.++.....-
T Consensus 60 ~P~inRGy~~R~~aI~~~v~~Fl~~--~~~~~qivnLGcG~D~l~frL~s~~~-----~~~~~fievDfp~~~~rKi 129 (335)
T KOG2918|consen 60 APEINRGYWARTMAIRHAVRAFLEQ--TDGKKQIVNLGAGFDTLYFRLLSSGE-----LDRVKFIEVDFPEVVERKI 129 (335)
T ss_pred CceecchhhHHHHHHHHHHHHHHHh--cCCceEEEEcCCCccchhhhhhccCC-----CCcceEEEecCcHHHHHHH
Confidence 56664 4555555542 2334444 33568999999999999999987642 1345677777776665433
No 223
>PRK10742 putative methyltransferase; Provisional
Probab=40.45 E-value=67 Score=30.60 Aligned_cols=69 Identities=22% Similarity=0.277 Sum_probs=47.5
Q ss_pred CCeecCCCh-hHHHH----HHHHHHHHHHHHHcCCCC--cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecCh
Q 021589 129 GDFITSPEV-SQMFG----EMVGVWAMCLWEQMGQPN--RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSP 201 (310)
Q Consensus 129 GDFiTSpeI-s~~FG----e~Ia~~~~~~w~~~g~p~--~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP 201 (310)
-||++...- -..|| +.|++.+ |... ..+|+++=||.|..+.-++.. ..++++||.||
T Consensus 57 vDF~~~~~a~rR~~~~g~~~~l~kAv-------glk~g~~p~VLD~TAGlG~Da~~las~---------G~~V~~vEr~p 120 (250)
T PRK10742 57 VDFVGGAMAHRRKFGGGRGEAVAKAV-------GIKGDYLPDVVDATAGLGRDAFVLASV---------GCRVRMLERNP 120 (250)
T ss_pred EEccCchHHHHHHhcCCCccHHHHHh-------CCCCCCCCEEEECCCCccHHHHHHHHc---------CCEEEEEECCH
Confidence 588765322 24555 5555443 4222 238999999999988866532 13699999999
Q ss_pred hhHHHHHHhccc
Q 021589 202 TLQKLQHHNLKC 213 (310)
Q Consensus 202 ~Lr~~Q~e~L~~ 213 (310)
.+....++.|..
T Consensus 121 ~vaalL~dgL~r 132 (250)
T PRK10742 121 VVAALLDDGLAR 132 (250)
T ss_pred HHHHHHHHHHHH
Confidence 999998888865
No 224
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=40.41 E-value=57 Score=32.89 Aligned_cols=47 Identities=13% Similarity=0.186 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHHHHHHHcC---CC-CcceEEEecCCch----HHHHHHHHHHh
Q 021589 137 VSQMFGEMVGVWAMCLWEQMG---QP-NRVNLVELGPGRG----TLMADLLRGAS 183 (310)
Q Consensus 137 Is~~FGe~Ia~~~~~~w~~~g---~p-~~l~IvElGaG~G----tLa~DIL~~l~ 183 (310)
+-...+..+..++.+..+.+. .| .++.|+|+|||+| .++..|++.++
T Consensus 36 ~Q~~~~~~~k~~leeai~~~~~~~~p~~~~~iaDlGcs~G~ntl~~vs~iI~~i~ 90 (386)
T PLN02668 36 AQALHARSMLHLLEETLDNVHLNSSPEVPFTAVDLGCSSGSNTIHIIDVIVKHMS 90 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCcceeEEEecCCCCccHHHHHHHHHHHHH
Confidence 434444444444444322232 24 5789999999999 55566676664
No 225
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=40.28 E-value=1.5e+02 Score=28.35 Aligned_cols=116 Identities=9% Similarity=-0.021 Sum_probs=69.6
Q ss_pred CchHHHHHHHHHHHHhcCCcccHHHHHHHhhcCCCCcccCCCCCCCCCCCeecCCCh----hHHHHHHHHHHHHHHHHHc
Q 021589 81 KLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEV----SQMFGEMVGVWAMCLWEQM 156 (310)
Q Consensus 81 ~~~~~L~~~i~~~I~~~~GpIsf~dFM~~aLY~P~~GYY~~~~~~G~~GDFiTSpeI----s~~FGe~Ia~~~~~~w~~~ 156 (310)
.+.+-+...|..+++.. |.-.|++|.....-++ .-.+ .-=|.+|.++. .+-.=+.++..+...+...
T Consensus 22 ~k~~~v~~Rl~~~~~~~-~~~~~~~y~~~l~~~~-----~e~~---~~l~~ltin~T~FFR~~~~f~~l~~~v~p~l~~~ 92 (268)
T COG1352 22 YKRTLVYRRLSRRLRKL-GLKNFEEYLNLLESDS-----EELQ---AFLDALTINVTEFFRDPEHFEELRDEVLPELVKR 92 (268)
T ss_pred hhHHHHHHHHHHHHHHh-CcccHHHHHHHHhCCH-----HHHH---HHHHHhhhccchhccCcHHHHHHHHHHHHHHHhh
Confidence 46678888888888886 5445888887665441 1100 01123444442 2333455677777655444
Q ss_pred CCCCcceEEEecCCchHHHHHHHHHHhc-CcCc-cccceEEEEecChhhHH
Q 021589 157 GQPNRVNLVELGPGRGTLMADLLRGASK-FKNF-TESLHIHLVECSPTLQK 205 (310)
Q Consensus 157 g~p~~l~IvElGaG~GtLa~DIL~~l~~-~p~~-~~~l~y~iVE~SP~Lr~ 205 (310)
..+.+++|...||++|.=...|--.+.+ .+.+ -..++++-.|+|...-+
T Consensus 93 ~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~ 143 (268)
T COG1352 93 KKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLE 143 (268)
T ss_pred ccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHH
Confidence 3336799999999999655444444332 2321 12478999999976544
No 226
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=39.32 E-value=15 Score=38.92 Aligned_cols=42 Identities=43% Similarity=0.851 Sum_probs=33.4
Q ss_pred HHHHHHHhhcCCCCcccCCC--CC--C-C----CCCCee--cCCChhHHHHHH
Q 021589 103 VAEYMEEVLTNPKAGFYINR--DV--F-G----AEGDFI--TSPEVSQMFGEM 144 (310)
Q Consensus 103 f~dFM~~aLY~P~~GYY~~~--~~--~-G----~~GDFi--TSpeIs~~FGe~ 144 (310)
.-+||+.-|-||..|+|... +. + | +.|-|| |+-||-++||+-
T Consensus 364 I~qYl~rdlsh~~GGfysaEDADSlp~h~~k~k~EGAfyaWt~dEIqqll~e~ 416 (786)
T KOG2244|consen 364 ILQYLRRDLSHPEGGFYSAEDADSLPFHGAKRKKEGAFYAWTSDEIQQLLGEN 416 (786)
T ss_pred HHHHHHHhccCCCCCcccccccCCCcccccccccccceEEeeHHHHHHHhCCC
Confidence 34799999999999999963 22 2 3 468898 899999999875
No 227
>COG3876 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.80 E-value=8.9 Score=37.95 Aligned_cols=36 Identities=22% Similarity=0.307 Sum_probs=28.3
Q ss_pred HhhcCCCCcccCC---CCCCCCCCCeecCCChhHHHHHH
Q 021589 109 EVLTNPKAGFYIN---RDVFGAEGDFITSPEVSQMFGEM 144 (310)
Q Consensus 109 ~aLY~P~~GYY~~---~~~~G~~GDFiTSpeIs~~FGe~ 144 (310)
.|||.|+||||.. ++..|..-|+.|---+-.+||+.
T Consensus 75 ~aL~~pEHG~rG~~qage~vg~y~d~~tgipvySLyg~~ 113 (409)
T COG3876 75 TALCTPEHGYRGAAQAGETVGNYPDRKTGIPVYSLYGVK 113 (409)
T ss_pred EEEeccccccccccccccccCCCcccccCCeEEEeeecc
Confidence 5899999999985 36788889999885555677764
No 228
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=38.56 E-value=67 Score=32.75 Aligned_cols=71 Identities=18% Similarity=0.225 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 138 SQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 138 s~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
+..|||+.-.++....+++.....-..+++|.|=|.++..+..+.+.-+ +.=+-++..-..++.+|++.+.
T Consensus 170 s~~YGE~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~----svG~eim~~pS~~a~~~~~~~k 240 (419)
T KOG3924|consen 170 SETYGETQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKK----SVGFEIMDKPSQCAELNKEEFK 240 (419)
T ss_pred ccchhhhhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhcccc----ccceeeecCcHHHHHHHHHHHH
Confidence 6889999999999999887765556889999999999998877764322 1224445555556667776554
No 229
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=38.32 E-value=47 Score=33.26 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=27.4
Q ss_pred eEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHh
Q 021589 163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN 210 (310)
Q Consensus 163 ~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~ 210 (310)
.+.+||||.|- |+|++-+.-- -.|+.||+...-.+.-++|
T Consensus 120 ~~~~LgCGKGG---DLlKw~kAgI-----~~~igiDIAevSI~qa~~R 159 (389)
T KOG1975|consen 120 DVLDLGCGKGG---DLLKWDKAGI-----GEYIGIDIAEVSINQARKR 159 (389)
T ss_pred ccceeccCCcc---cHhHhhhhcc-----cceEeeehhhccHHHHHHH
Confidence 67789999998 8888864311 1588888887655544333
No 230
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=37.60 E-value=64 Score=27.80 Aligned_cols=47 Identities=19% Similarity=0.319 Sum_probs=31.6
Q ss_pred HHHHHHcC--CC-CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChh
Q 021589 150 MCLWEQMG--QP-NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPT 202 (310)
Q Consensus 150 ~~~w~~~g--~p-~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~ 202 (310)
.++.++.+ .+ ...+++++||+.|-++.-++.... .+.+++-|++.|.
T Consensus 10 ~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~------~~~~v~avDl~~~ 59 (181)
T PF01728_consen 10 YEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGG------PAGRVVAVDLGPM 59 (181)
T ss_dssp HHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTT------TEEEEEEEESSST
T ss_pred HHHHHHCCCCCcccccEEEEcCCcccceeeeeeeccc------ccceEEEEecccc
Confidence 34455555 23 458999999999999998876641 1246777777765
No 231
>PRK10646 ADP-binding protein; Provisional
Probab=37.27 E-value=68 Score=28.17 Aligned_cols=41 Identities=20% Similarity=0.302 Sum_probs=28.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHcCCCCcceEE--EecCCchHHHHHHHHHHh
Q 021589 135 PEVSQMFGEMVGVWAMCLWEQMGQPNRVNLV--ELGPGRGTLMADLLRGAS 183 (310)
Q Consensus 135 peIs~~FGe~Ia~~~~~~w~~~g~p~~l~Iv--ElGaG~GtLa~DIL~~l~ 183 (310)
++-..-||+.||..+ .+....++ ++|||.=||++.|++++.
T Consensus 11 ~~~t~~l~~~la~~l--------~~g~vi~L~GdLGaGKTtf~rgl~~~Lg 53 (153)
T PRK10646 11 EQATLDLGARVAKAC--------DGATVIYLYGDLGAGKTTFSRGFLQALG 53 (153)
T ss_pred HHHHHHHHHHHHHhC--------CCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 444567788877654 22222222 899999999999999984
No 232
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=36.98 E-value=50 Score=31.37 Aligned_cols=42 Identities=21% Similarity=0.457 Sum_probs=24.2
Q ss_pred cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHh
Q 021589 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN 210 (310)
Q Consensus 161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~ 210 (310)
..+|+|+|+|+| -..++-++.- ..+|++=+....+...+..+
T Consensus 87 ~~~vlELGsGtg--lvG~~aa~~~------~~~v~ltD~~~~~~~L~~~~ 128 (248)
T KOG2793|consen 87 YINVLELGSGTG--LVGILAALLL------GAEVVLTDLPKVVENLKFNR 128 (248)
T ss_pred ceeEEEecCCcc--HHHHHHHHHh------cceeccCCchhhHHHHHHhh
Confidence 467999999999 3344544421 12455555555555544443
No 233
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=34.59 E-value=89 Score=30.10 Aligned_cols=62 Identities=11% Similarity=0.055 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHH
Q 021589 139 QMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH 209 (310)
Q Consensus 139 ~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e 209 (310)
+.|-|.||--+.+-........ -...+||||.|.+++.++..- + -+++++|.|-.|.+--+.
T Consensus 52 dylkeeig~rlaDrvfD~kk~f-p~a~diGcs~G~v~rhl~~e~-----v---ekli~~DtS~~M~~s~~~ 113 (325)
T KOG2940|consen 52 DYLKEEIGDRLADRVFDCKKSF-PTAFDIGCSLGAVKRHLRGEG-----V---EKLIMMDTSYDMIKSCRD 113 (325)
T ss_pred hHHHHHHHHHHHHHHHHHhhhC-cceeecccchhhhhHHHHhcc-----h---hheeeeecchHHHHHhhc
Confidence 5667777766655443333222 278999999999999887642 1 148899999999876554
No 234
>PHA01634 hypothetical protein
Probab=33.81 E-value=65 Score=28.28 Aligned_cols=44 Identities=14% Similarity=0.040 Sum_probs=33.9
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~ 213 (310)
-+|+.+||+-|.=|.-.+-. .+-.++.+|++|.|++.-++.+.-
T Consensus 30 KtV~dIGA~iGdSaiYF~l~--------GAK~Vva~E~~~kl~k~~een~k~ 73 (156)
T PHA01634 30 RTIQIVGADCGSSALYFLLR--------GASFVVQYEKEEKLRKKWEEVCAY 73 (156)
T ss_pred CEEEEecCCccchhhHHhhc--------CccEEEEeccCHHHHHHHHHHhhh
Confidence 48999999999876655422 123689999999999999887653
No 235
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=33.38 E-value=1.3e+02 Score=30.85 Aligned_cols=35 Identities=29% Similarity=0.470 Sum_probs=26.7
Q ss_pred eEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHH
Q 021589 163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQK 205 (310)
Q Consensus 163 ~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~ 205 (310)
++|++|+|.|.|++-+ .+...+.+.-||-|..+-+
T Consensus 156 ~vvD~GaG~G~LSr~l--------Sl~y~lsV~aIegsq~~~~ 190 (476)
T KOG2651|consen 156 QVVDVGAGQGHLSRFL--------SLGYGLSVKAIEGSQRLVE 190 (476)
T ss_pred eeEEcCCCchHHHHHH--------hhccCceEEEeccchHHHH
Confidence 8999999999998754 1223478999999965544
No 236
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=32.64 E-value=2e+02 Score=28.66 Aligned_cols=50 Identities=18% Similarity=0.117 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCc-ceEEEecCCch-HHHHHHHHHHh-cCcC
Q 021589 138 SQMFGEMVGVWAMCLWEQMGQPNR-VNLVELGPGRG-TLMADLLRGAS-KFKN 187 (310)
Q Consensus 138 s~~FGe~Ia~~~~~~w~~~g~p~~-l~IvElGaG~G-tLa~DIL~~l~-~~p~ 187 (310)
++-+.+-+-..+.+..++.+...- +-+-.+|+|+| -++.-|++.++ .+|+
T Consensus 78 g~~~~~~~~d~ir~~~E~cd~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y~~ 130 (379)
T cd02190 78 GHQYIDSILEKIRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEFPE 130 (379)
T ss_pred chhHHHHHHHHHHHHHhhCcCcceEEEEeecCCCcchhHHHHHHHHHHHhcCc
Confidence 344455555556666666554433 34559999997 56666777776 3554
No 237
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=32.23 E-value=77 Score=28.49 Aligned_cols=65 Identities=15% Similarity=0.220 Sum_probs=39.3
Q ss_pred CeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHH
Q 021589 130 DFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH 209 (310)
Q Consensus 130 DFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e 209 (310)
.|-|+|+|.--.=++|-.- .|.-..-.|.++|||.|-|+... . .+.+-.++=+|+.|.--+.-..
T Consensus 25 QY~T~p~iAasM~~~Ih~T-------ygdiEgkkl~DLgcgcGmLs~a~-----s---m~~~e~vlGfDIdpeALEIf~r 89 (185)
T KOG3420|consen 25 QYPTRPHIAASMLYTIHNT-------YGDIEGKKLKDLGCGCGMLSIAF-----S---MPKNESVLGFDIDPEALEIFTR 89 (185)
T ss_pred hCCCcHHHHHHHHHHHHhh-------hccccCcchhhhcCchhhhHHHh-----h---cCCCceEEeeecCHHHHHHHhh
Confidence 4679999865444444332 24223348999999999988322 1 1222346678888876654443
No 238
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=31.92 E-value=2.7e+02 Score=29.06 Aligned_cols=96 Identities=24% Similarity=0.373 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHHHHHHHhcCCcccHHHHHHHhhcCCCCcccC-CC------------CCC-CCCCCee
Q 021589 67 RSGLYNPPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYI-NR------------DVF-GAEGDFI 132 (310)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~L~~~i~~~I~~~~GpIsf~dFM~~aLY~P~~GYY~-~~------------~~~-G~~GDFi 132 (310)
||..+-+|=-++...+...+.+.+.+.-++. | |+-++- +-|+.. .. .++ +..|||+
T Consensus 49 rS~i~fTPl~~~~~ID~~~i~~~V~~ey~~A-g-i~~~di--------e~~ahIITg~~~~~~Nl~~~v~~~~~~~gdfV 118 (475)
T PRK10719 49 RSPIYFTPLLKQGEIDEAAIKELIEEEYQKA-G-IAPESI--------DSGAVIITGETARKENAREVVMALSGSAGDFV 118 (475)
T ss_pred ecCceecCCCCCccccHHHHHHHHHHHHHHc-C-CCHHHc--------cccEEEEEechhHHHHHHHHHHHhccccccee
Confidence 5666667888888899999999999998886 4 666653 234442 00 112 3579999
Q ss_pred --cC-CChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHH
Q 021589 133 --TS-PEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLM 175 (310)
Q Consensus 133 --TS-peIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa 175 (310)
|| +++-.++. -+|.-...+-++ .....-+|++|+|+=.++
T Consensus 119 VA~AG~~le~iva-~~ASg~avLseE--ke~gVa~IDIGgGTT~ia 161 (475)
T PRK10719 119 VATAGPDLESIIA-GKGAGAQTLSEE--RNTRVLNIDIGGGTANYA 161 (475)
T ss_pred eeccCccHHHhhh-HHHhhHHHhhhh--ccCceEEEEeCCCceEEE
Confidence 66 88855544 333333222222 223368999999985543
No 239
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=31.53 E-value=41 Score=35.10 Aligned_cols=55 Identities=22% Similarity=0.202 Sum_probs=35.1
Q ss_pred CCCCeecCCChhHHHHHHHHHHHHHHHHHcCC----CCcceEEEecCCchHHHHHHHHH
Q 021589 127 AEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQ----PNRVNLVELGPGRGTLMADLLRG 181 (310)
Q Consensus 127 ~~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~----p~~l~IvElGaG~GtLa~DIL~~ 181 (310)
..||.++=|--+.+|-.-...|+.++-+-+.. ..--..+++|||.|+|+..++..
T Consensus 80 ~~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r 138 (506)
T PF03141_consen 80 VEGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLER 138 (506)
T ss_pred ecCCEEEeCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhC
Confidence 35777776666666655555555333332221 22346789999999999999865
No 240
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=30.96 E-value=71 Score=31.32 Aligned_cols=41 Identities=24% Similarity=0.205 Sum_probs=29.6
Q ss_pred eEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 163 ~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
.|+|+=||.|+++.-+-+.. -+++-||.++...+.-++.+.
T Consensus 199 ~vlDlycG~G~fsl~la~~~---------~~V~gvE~~~~av~~A~~Na~ 239 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKA---------KKVIGVEIVEEAVEDARENAK 239 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCS---------SEEEEEES-HHHHHHHHHHHH
T ss_pred cEEEEeecCCHHHHHHHhhC---------CeEEEeeCCHHHHHHHHHHHH
Confidence 79999999999988763321 268999999998776665554
No 241
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=29.67 E-value=1.1e+02 Score=26.25 Aligned_cols=18 Identities=44% Similarity=0.835 Sum_probs=16.7
Q ss_pred EecCCchHHHHHHHHHHh
Q 021589 166 ELGPGRGTLMADLLRGAS 183 (310)
Q Consensus 166 ElGaG~GtLa~DIL~~l~ 183 (310)
++|+|.-||++.+++.+.
T Consensus 30 ~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 30 DLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 899999999999999874
No 242
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=28.70 E-value=2.2e+02 Score=28.06 Aligned_cols=48 Identities=19% Similarity=0.039 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCcc-eEEEecCCch-HHHHHHHHHHhc-Cc
Q 021589 139 QMFGEMVGVWAMCLWEQMGQPNRV-NLVELGPGRG-TLMADLLRGASK-FK 186 (310)
Q Consensus 139 ~~FGe~Ia~~~~~~w~~~g~p~~l-~IvElGaG~G-tLa~DIL~~l~~-~p 186 (310)
+-+.+.+-..+....++.+..+-+ -+-.+|.|+| -++.-|++.++. +|
T Consensus 69 ~~~~e~~~d~ir~~~E~cD~l~gf~i~~sl~GGTGSG~gs~l~e~l~d~y~ 119 (382)
T cd06059 69 PELIDEILDRIRKQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYP 119 (382)
T ss_pred HHHHHHHHHHHHHHHHhCCCcCceEEEEecCCCcchhHHHHHHHHHHHhcC
Confidence 344555555565666666554333 4558999987 566677777763 55
No 243
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=28.14 E-value=93 Score=20.11 Aligned_cols=28 Identities=29% Similarity=0.351 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHhcCCcccHHHHHHHhhc
Q 021589 83 ESELVKHLKGIIKFRGGPISVAEYMEEVLT 112 (310)
Q Consensus 83 ~~~L~~~i~~~I~~~~GpIsf~dFM~~aLY 112 (310)
+.++.+.|.+..+.. | +|.++||..+|-
T Consensus 7 ~~~~~~~l~~~a~~~-g-~s~s~~ir~ai~ 34 (39)
T PF01402_consen 7 PDELYERLDELAKEL-G-RSRSELIREAIR 34 (39)
T ss_dssp EHHHHHHHHHHHHHH-T-SSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH-C-cCHHHHHHHHHH
Confidence 456778888888877 5 899999999873
No 244
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=28.12 E-value=2.2e+02 Score=25.69 Aligned_cols=50 Identities=12% Similarity=0.061 Sum_probs=31.0
Q ss_pred CcceEEEecCCchHHHHHHHHHHhc-CcCccc-cceEEEEecChhhHHHHHH
Q 021589 160 NRVNLVELGPGRGTLMADLLRGASK-FKNFTE-SLHIHLVECSPTLQKLQHH 209 (310)
Q Consensus 160 ~~l~IvElGaG~GtLa~DIL~~l~~-~p~~~~-~l~y~iVE~SP~Lr~~Q~e 209 (310)
.+++|.-.||++|.=+.-|.-.+.+ .+.... .++++-.|+|+...+.-++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~ 82 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA 82 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh
Confidence 6799999999999755555444432 122222 5789999999987665554
No 245
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=27.82 E-value=31 Score=36.06 Aligned_cols=79 Identities=24% Similarity=0.422 Sum_probs=46.8
Q ss_pred CCCC-CCCCCeecCCCh-hHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHH-hc--C------cCc--
Q 021589 122 RDVF-GAEGDFITSPEV-SQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGA-SK--F------KNF-- 188 (310)
Q Consensus 122 ~~~~-G~~GDFiTSpeI-s~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l-~~--~------p~~-- 188 (310)
..+| |+.|+|+||-.| ..+..|+..+-.++. +..+.|..|.+ .|||.|...||-.- +. | |++
T Consensus 315 ~SPfAG~EGk~vTSR~i~dRL~~El~~NValrV-e~t~~pd~f~V----sGRGELhLsILiE~MRREGfEl~VsrP~Vi~ 389 (603)
T COG1217 315 DSPFAGKEGKFVTSRQIRDRLNKELETNVALRV-EETESPDAFEV----SGRGELHLSILIENMRREGFELQVSRPEVII 389 (603)
T ss_pred CCCCCCcCCceeeHHHHHHHHHHHhhhceeEEE-eecCCCCeEEE----eccceeehHHHHHHhhhcceEEEecCceEEE
Confidence 3456 899999999777 466666654432211 12344444433 49999999998653 21 1 332
Q ss_pred -------cccceEEEEecChhhHH
Q 021589 189 -------TESLHIHLVECSPTLQK 205 (310)
Q Consensus 189 -------~~~l~y~iVE~SP~Lr~ 205 (310)
.+..+.+.||+-.....
T Consensus 390 keidG~~~EP~E~v~iDv~ee~~G 413 (603)
T COG1217 390 KEIDGVKCEPFEEVTIDVPEEHQG 413 (603)
T ss_pred EecCCcCcCcceeEEecCchhhhh
Confidence 34456666776655544
No 246
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=26.89 E-value=50 Score=30.80 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHH
Q 021589 142 GEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMAD 177 (310)
Q Consensus 142 Ge~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~D 177 (310)
|..+|+|+..-=+-. ...+|+|+|+|+|--+-.
T Consensus 64 G~~lAR~i~~~PetV---rgkrVLd~gagsgLvaIA 96 (218)
T COG3897 64 GQVLARYIDDHPETV---RGKRVLDLGAGSGLVAIA 96 (218)
T ss_pred hHHHHHHHhcCcccc---ccceeeecccccChHHHH
Confidence 556777774321110 235999999999976544
No 247
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=26.77 E-value=3.2e+02 Score=27.71 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHH
Q 021589 142 GEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMAD 177 (310)
Q Consensus 142 Ge~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~D 177 (310)
=|+||.-++.+ .|....-.+++-=||+||++-.
T Consensus 176 ketLAaAil~l---agw~~~~pl~DPmCGSGTi~IE 208 (381)
T COG0116 176 KETLAAAILLL---AGWKPDEPLLDPMCGSGTILIE 208 (381)
T ss_pred hHHHHHHHHHH---cCCCCCCccccCCCCccHHHHH
Confidence 57788777644 3433224789999999998754
No 248
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=26.34 E-value=72 Score=29.45 Aligned_cols=80 Identities=18% Similarity=0.324 Sum_probs=53.2
Q ss_pred EEEEcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhcCCcccHHHHHHHhhcCCCCcccCCCCCCC-----------CCCC
Q 021589 62 AISIDRSGLYNPPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFG-----------AEGD 130 (310)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~I~~~~GpIsf~dFM~~aLY~P~~GYY~~~~~~G-----------~~GD 130 (310)
..+.|-+||.. ..- .... .+.++.+|..- ++=.++.-..|.++..-.|.+....| ..|+
T Consensus 116 vy~fDgPGf~~---~~~---~~~~-~~~~~~kI~~~---vp~~siVg~ll~~~~~~~vV~S~~~gi~QH~~~sW~v~~~~ 185 (224)
T PF11187_consen 116 VYSFDGPGFSE---EFL---ESPG-YQRIKDKIHNY---VPQSSIVGMLLEHPEPYTVVKSNAKGIMQHDPYSWQVEGGD 185 (224)
T ss_pred EEEeeCCCCCh---hhc---ccHh-HHHHhhhhEEE---cCCcceecccccCCCCeEEEECCCCChhhcCCeeEEEcCCc
Confidence 56788888866 111 1222 34566666643 67778888888888876665432223 4799
Q ss_pred eecCCCh---hHHHHHHHHHHHHH
Q 021589 131 FITSPEV---SQMFGEMVGVWAMC 151 (310)
Q Consensus 131 FiTSpeI---s~~FGe~Ia~~~~~ 151 (310)
|+++.++ +.+|.++|..|+..
T Consensus 186 fv~~~~~t~~s~~~~~~~~~w~~~ 209 (224)
T PF11187_consen 186 FVYADGLTPESKFFDKTIKSWISS 209 (224)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHh
Confidence 9999776 67888888888754
No 249
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=26.21 E-value=68 Score=32.00 Aligned_cols=34 Identities=21% Similarity=0.286 Sum_probs=24.7
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhh
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTL 203 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~L 203 (310)
-.|++.|||+|-|..=-.++. +.+++.||.|.-.
T Consensus 62 K~VlDVGcGtGILS~F~akAG--------A~~V~aVe~S~ia 95 (346)
T KOG1499|consen 62 KTVLDVGCGTGILSMFAAKAG--------ARKVYAVEASSIA 95 (346)
T ss_pred CEEEEcCCCccHHHHHHHHhC--------cceEEEEechHHH
Confidence 489999999997655333322 2478999999766
No 250
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=26.14 E-value=6e+02 Score=24.47 Aligned_cols=117 Identities=7% Similarity=0.060 Sum_probs=67.6
Q ss_pred CchHHHHHHHHHHHHhcCCcccHHHHHHHhhcCCCCcccCC---CCCCCCCCCeecCCChhHHHHHHHHHHHHHHHHHcC
Q 021589 81 KLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYIN---RDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMG 157 (310)
Q Consensus 81 ~~~~~L~~~i~~~I~~~~GpIsf~dFM~~aLY~P~~GYY~~---~~~~G~~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g 157 (310)
.+...|...|..+++.. |-=++++|.+....++....-.. .--+|.. .|+==|+.=..+.+ .+ ...
T Consensus 45 ~k~~~l~~rl~~r~~~~-g~~s~~~y~~~L~~~~~~~e~~~li~~ltineT-~FFRd~~~f~~L~~----~~----~~~- 113 (287)
T PRK10611 45 HKREMVYNRLVRRLRSL-GLNDFGQYLALLESNQNSAEWQAFINALTTNLT-AFFREAHHFPILAE----HA----RRR- 113 (287)
T ss_pred chHHHHHHHHHHHHHHc-CCCCHHHHHHHHhcCCCHHHHHHHHHHhhCCCC-CccCCcHHHHHHHH----HH----Hhc-
Confidence 34577888888888887 65689999988887642111111 0012222 22222222223322 22 111
Q ss_pred CCCcceEEEecCCchHHHHHHHHHHhc-CcCccccceEEEEecChhhHHHHHH
Q 021589 158 QPNRVNLVELGPGRGTLMADLLRGASK-FKNFTESLHIHLVECSPTLQKLQHH 209 (310)
Q Consensus 158 ~p~~l~IvElGaG~GtLa~DIL~~l~~-~p~~~~~l~y~iVE~SP~Lr~~Q~e 209 (310)
..+++|.-.||.+|.=+.-|.-.+.+ .+..-..++++-+|+|+..-+.-++
T Consensus 114 -~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~ 165 (287)
T PRK10611 114 -SGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARS 165 (287)
T ss_pred -CCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHh
Confidence 23599999999999766665554433 2222225789999999876655444
No 251
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=24.60 E-value=2.6e+02 Score=30.22 Aligned_cols=98 Identities=19% Similarity=0.297 Sum_probs=59.0
Q ss_pred HHHHHHHHHHh-cCCcccHHHHHHHhhcCCCCcccCCC-----CCCCCCCCeecC--CChhHHHH---------------
Q 021589 86 LVKHLKGIIKF-RGGPISVAEYMEEVLTNPKAGFYINR-----DVFGAEGDFITS--PEVSQMFG--------------- 142 (310)
Q Consensus 86 L~~~i~~~I~~-~~GpIsf~dFM~~aLY~P~~GYY~~~-----~~~G~~GDFiTS--peIs~~FG--------------- 142 (310)
+.+++++.-.. ..-++||.||.+.|--+|. .|.+. +-||..+---|. |-++.+||
T Consensus 3 ~~~~~~~~~~~~~~~~~sl~eyL~~vk~~p~--~~~~A~~R~~~~Ig~~~vv~~~~~~~~~rif~~~~i~ry~fF~d~yG 80 (644)
T PRK15455 3 IFDHYQQRYEAAKEEEFSLQEYLELCKQDPS--AYANAAERLLMAIGEPEMVDTAKDPRLSRIFSNRVIKRYPAFEEFYG 80 (644)
T ss_pred HHHHHHHHHHHhhcccccHHHHHHHHhcChH--HHhhHHHHHHHHhCCceeeecCccchhhhhhcccccccccchhcccC
Confidence 44455544433 2357899999999999996 56542 225655533343 44555665
Q ss_pred --HH---HHHHHHHHHHHcCCCCcceEE---EecCCchHHHHHHHHHHhcCc
Q 021589 143 --EM---VGVWAMCLWEQMGQPNRVNLV---ELGPGRGTLMADLLRGASKFK 186 (310)
Q Consensus 143 --e~---Ia~~~~~~w~~~g~p~~l~Iv---ElGaG~GtLa~DIL~~l~~~p 186 (310)
+. |..++....+.++...+ .|+ .-|.|.=+|+.-|-+.++++|
T Consensus 81 lee~ieriv~~l~~Aa~gl~~~~~-IL~LvGPpG~GKSsLa~~la~~le~~~ 131 (644)
T PRK15455 81 MEEAIEQIVSYFRHAAQGLEEKKQ-ILYLLGPVGGGKSSLAERLKSLMERVP 131 (644)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCc-eEEEecCCCCCchHHHHHHHHHHHhCc
Confidence 22 33344344455555432 233 457788899999999988775
No 252
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=24.11 E-value=1.4e+02 Score=23.45 Aligned_cols=36 Identities=8% Similarity=0.188 Sum_probs=27.2
Q ss_pred CchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHh
Q 021589 170 GRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN 210 (310)
Q Consensus 170 G~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~ 210 (310)
|-|.++..|++.|.+.. .++++||..+...+.-++.
T Consensus 5 G~g~~~~~i~~~L~~~~-----~~vvvid~d~~~~~~~~~~ 40 (116)
T PF02254_consen 5 GYGRIGREIAEQLKEGG-----IDVVVIDRDPERVEELREE 40 (116)
T ss_dssp S-SHHHHHHHHHHHHTT-----SEEEEEESSHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHhCC-----CEEEEEECCcHHHHHHHhc
Confidence 55789999999986521 4799999999887765553
No 253
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=22.95 E-value=42 Score=26.17 Aligned_cols=34 Identities=18% Similarity=0.061 Sum_probs=5.5
Q ss_pred EEecCCchHHHHHHHHHHhcCcCccccceEEEEecChh
Q 021589 165 VELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPT 202 (310)
Q Consensus 165 vElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~ 202 (310)
||+|...|.-+.-++..++.... .+++.||..+.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~----~~~~~vD~~~~ 34 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGR----GKLYSVDPFPG 34 (106)
T ss_dssp ------------------------------EEEESS--
T ss_pred Ccccccccccccccccccccccc----CCEEEEECCCc
Confidence 69998899888888887753211 36899999885
No 254
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=22.33 E-value=1.6e+02 Score=26.92 Aligned_cols=67 Identities=21% Similarity=0.207 Sum_probs=45.8
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 133 TSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 133 TSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
|=|..+.+ =|+|-+|+... .. ...+++++=||+|.|...-|..- +-+.++||.+..-.+.-++++.
T Consensus 22 ~RPT~drV-REalFNil~~~----~i-~g~~~LDlFAGSGaLGlEAlSRG--------A~~~~~vE~~~~a~~~l~~N~~ 87 (187)
T COG0742 22 TRPTTDRV-REALFNILAPD----EI-EGARVLDLFAGSGALGLEALSRG--------AARVVFVEKDRKAVKILKENLK 87 (187)
T ss_pred cCCCchHH-HHHHHHhcccc----cc-CCCEEEEecCCccHhHHHHHhCC--------CceEEEEecCHHHHHHHHHHHH
Confidence 34555544 56676776432 01 22499999999999997766542 1368999999998887777665
Q ss_pred c
Q 021589 213 C 213 (310)
Q Consensus 213 ~ 213 (310)
.
T Consensus 88 ~ 88 (187)
T COG0742 88 A 88 (187)
T ss_pred H
Confidence 4
No 255
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=22.04 E-value=2.7e+02 Score=24.95 Aligned_cols=43 Identities=21% Similarity=0.268 Sum_probs=29.2
Q ss_pred eEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589 163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (310)
Q Consensus 163 ~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~ 212 (310)
+++++|.|-|-=.- +|.-+ +|+ +++++||.+..=....++...
T Consensus 51 ~~lDiGSGaGfPGi-pLaI~--~p~----~~~~LvEs~~KK~~FL~~~~~ 93 (184)
T PF02527_consen 51 KVLDIGSGAGFPGI-PLAIA--RPD----LQVTLVESVGKKVAFLKEVVR 93 (184)
T ss_dssp EEEEETSTTTTTHH-HHHHH---TT----SEEEEEESSHHHHHHHHHHHH
T ss_pred eEEecCCCCCChhH-HHHHh--CCC----CcEEEEeCCchHHHHHHHHHH
Confidence 79999999996332 12111 244 589999999887776666443
No 256
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=21.10 E-value=1.1e+02 Score=25.76 Aligned_cols=18 Identities=33% Similarity=0.641 Sum_probs=16.9
Q ss_pred EecCCchHHHHHHHHHHh
Q 021589 166 ELGPGRGTLMADLLRGAS 183 (310)
Q Consensus 166 ElGaG~GtLa~DIL~~l~ 183 (310)
++|||.=||++.+++.+.
T Consensus 23 dLGaGKTtf~r~l~~~lg 40 (123)
T PF02367_consen 23 DLGAGKTTFVRGLARALG 40 (123)
T ss_dssp STTSSHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 899999999999999984
No 257
>PRK08246 threonine dehydratase; Provisional
Probab=21.06 E-value=3.3e+02 Score=26.02 Aligned_cols=42 Identities=19% Similarity=0.129 Sum_probs=29.5
Q ss_pred HHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecCh
Q 021589 151 CLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSP 201 (310)
Q Consensus 151 ~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP 201 (310)
++|++++.|. .|| .+.|+|.++..|..+++.. .+++.||+..
T Consensus 161 Ei~eq~~~~D--~iv-~~vG~GG~~~Gi~~~~~~~------~~vi~ve~~~ 202 (310)
T PRK08246 161 EIEEQAPGVD--TVL-VAVGGGGLIAGIAAWFEGR------ARVVAVEPEG 202 (310)
T ss_pred HHHHhcCCCC--EEE-EecCccHHHHHHHHHhcCC------CEEEEEeeCC
Confidence 4456665443 343 6889999999999988532 5788898643
No 258
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=20.73 E-value=1.4e+02 Score=26.32 Aligned_cols=89 Identities=19% Similarity=0.369 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHhhcCCCCcccCCCCCCCCCCCeecCCChhHHHHHHHH------------------
Q 021589 85 ELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVG------------------ 146 (310)
Q Consensus 85 ~L~~~i~~~I~~~~GpIsf~dFM~~aLY~P~~GYY~~~~~~G~~GDFiTSpeIs~~FGe~Ia------------------ 146 (310)
.|.+.+++.+.- |+..+..+.+. .||.....|.+.=+|+.+++...+.=++.+
T Consensus 3 ~L~~d~~dfl~l----Ip~~~i~~i~~-----~Y~~~D~efq~~~~yl~s~~f~~l~~~l~~~pE~~~l~~yL~~~gldv 73 (179)
T PF06757_consen 3 SLQEDFQDFLDL----IPMEEIQDIVQ-----RYYLEDAEFQAAVRYLNSSEFKQLWQQLEALPEVKALLDYLESAGLDV 73 (179)
T ss_pred hHHHHHHHHHHh----cCHHHHHHHHH-----HHHHcCHHHHHHHHHHcChHHHHHHHHHHcCHHHHHHHHHHHHCCCCH
Confidence 566777777653 78888777776 477776666666666666665444433321
Q ss_pred -HHHHHHHHHcCCC--CcceEEE--ecCCchHHHHHHHHHH
Q 021589 147 -VWAMCLWEQMGQP--NRVNLVE--LGPGRGTLMADLLRGA 182 (310)
Q Consensus 147 -~~~~~~w~~~g~p--~~l~IvE--lGaG~GtLa~DIL~~l 182 (310)
.++-..-..+|.| .|...+. .|.|=..|..||+..+
T Consensus 74 ~~~i~~i~~~l~~~~~~p~~~~~~~~~~g~~g~~~di~~~l 114 (179)
T PF06757_consen 74 YYYINQINDLLGLPPLNPTPSLSCSRGGGLNGFVDDILALL 114 (179)
T ss_pred HHHHHHHHHHHcCCcCCCCcccccccCCCHHHHHHHHHHHC
Confidence 1221122223433 2334444 7888888999998775
No 259
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=20.48 E-value=1.4e+02 Score=30.33 Aligned_cols=41 Identities=17% Similarity=0.245 Sum_probs=26.1
Q ss_pred ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 021589 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (310)
Q Consensus 162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L 211 (310)
-.|++.|||+|.|..--..+ .+-+++-||.|. |++.-++.+
T Consensus 179 kiVlDVGaGSGILS~FAaqA--------GA~~vYAvEAS~-MAqyA~~Lv 219 (517)
T KOG1500|consen 179 KIVLDVGAGSGILSFFAAQA--------GAKKVYAVEASE-MAQYARKLV 219 (517)
T ss_pred cEEEEecCCccHHHHHHHHh--------CcceEEEEehhH-HHHHHHHHH
Confidence 47899999999765433222 123688899985 444444433
Done!