BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021590
(310 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 301 bits (770), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 159/312 (50%), Positives = 204/312 (65%), Gaps = 14/312 (4%)
Query: 3 IPVIDFSKLYGEERAKTLAQIANACEVWGFFQLVNHGISEELLERVKKVASECYKLEREE 62
P+I K+ G ERA T I +ACE WGFF+LVNHGI E+ + V+K YK E+
Sbjct: 4 FPIISLDKVNGVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQ 63
Query: 63 GFKNSAAVKKLNELVEKKSGEKLENLDWEDVFLL-----SDDNEWPSKTPGFKETMAEYR 117
FK A K L + ++ + DWE F L S+ +E P ++E ++
Sbjct: 64 RFKELVASKALEGV-----QAEVTDXDWESTFFLKHLPISNISEVPDLDEEYREVXRDFA 118
Query: 118 SELKKLAENVMEVMDENLGLPKGYIKKAFNGGEGDNAFFGTKVSHYPPCPHPELVNGLRP 177
L+KLAE +++++ ENLGL KGY+K AF G +G N FGTKVS+YPPCP P+L+ GLR
Sbjct: 119 KRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPN--FGTKVSNYPPCPKPDLIKGLRA 176
Query: 178 HTDAGGVILLFQDEKVGGLQILKDEEWIDVQPLPNSIVINTGDQIEVLSNGRYKSIWHRV 237
HTDAGG+ILLFQD+KV GLQ+LKD +WIDV P +SIV+N GDQ+EV++NG+YKS+ HRV
Sbjct: 177 HTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRV 236
Query: 238 NATPDGNRRSIASFYNPSLKATIAPAPELSEKANQEVEQAANYPKFVFGDYMSVYAEQKF 297
A DG R S+ASFYNP A I PAP L EK +E +Q YPKFVF DY +YA KF
Sbjct: 237 IAQKDGARXSLASFYNPGSDAVIYPAPALVEKEAEENKQV--YPKFVFDDYXKLYAGLKF 294
Query: 298 LPKEPRFQAVNA 309
KEPRF+A A
Sbjct: 295 QAKEPRFEAXKA 306
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 152 bits (384), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 99/312 (31%), Positives = 148/312 (47%), Gaps = 25/312 (8%)
Query: 3 IPVIDFSKLYGEE---RAKTLAQIANACEVWGFFQLVNHGISEELLERVKKVASECYKL- 58
+P ID + ++ R + ++ A WG L+NHGI +L+ERVKK E + L
Sbjct: 46 VPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLS 105
Query: 59 -EREEGFKNSAAVKKLNELVEKKSGEKLENLDWEDVFLL-------SDDNEWPSKTPGFK 110
E +E + N A K+ K + L+WED F D + WP +
Sbjct: 106 VEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYI 165
Query: 111 ETMAEYRSELKKLAENVMEVMDENLGLPKGYIKKAFNGGEGDNAFFGTKVSHYPPCPHPE 170
E +EY L+ LA V + + LGL ++K G E K+++YP CP PE
Sbjct: 166 EATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLE--ELLLQMKINYYPKCPQPE 223
Query: 171 LVNGLRPHTDAGGVILLFQDEKVGGLQILKDEEWIDVQPLPNSIVINTGDQIEVLSNGRY 230
L G+ HTD + + + V GLQ+ + +W+ + +P+SIV++ GD +E+LSNG+Y
Sbjct: 224 LALGVEAHTDVSALTFILHN-MVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKY 282
Query: 231 KSIWHRVNATPDGNRRSIASFYNPSL-KATIAPAPELSEKANQEVEQAANYPKFVFGDYM 289
KSI HR + R S A F P K + P PE+ VE A +P F ++
Sbjct: 283 KSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMV-----SVESPAKFPPRTFAQHI 337
Query: 290 SVYAEQKFLPKE 301
E K KE
Sbjct: 338 ----EHKLFGKE 345
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 152 bits (383), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 99/312 (31%), Positives = 148/312 (47%), Gaps = 25/312 (8%)
Query: 3 IPVIDFSKLYGEE---RAKTLAQIANACEVWGFFQLVNHGISEELLERVKKVASECYKL- 58
+P ID + ++ R + ++ A WG L+NHGI +L+ERVKK E + L
Sbjct: 47 VPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLS 106
Query: 59 -EREEGFKNSAAVKKLNELVEKKSGEKLENLDWEDVFLL-------SDDNEWPSKTPGFK 110
E +E + N A K+ K + L+WED F D + WP +
Sbjct: 107 VEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYI 166
Query: 111 ETMAEYRSELKKLAENVMEVMDENLGLPKGYIKKAFNGGEGDNAFFGTKVSHYPPCPHPE 170
E +EY L+ LA V + + LGL ++K G E K+++YP CP PE
Sbjct: 167 EATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLE--ELLLQMKINYYPKCPQPE 224
Query: 171 LVNGLRPHTDAGGVILLFQDEKVGGLQILKDEEWIDVQPLPNSIVINTGDQIEVLSNGRY 230
L G+ HTD + + + V GLQ+ + +W+ + +P+SIV++ GD +E+LSNG+Y
Sbjct: 225 LALGVEAHTDVSALTFILHN-MVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKY 283
Query: 231 KSIWHRVNATPDGNRRSIASFYNPSL-KATIAPAPELSEKANQEVEQAANYPKFVFGDYM 289
KSI HR + R S A F P K + P PE+ VE A +P F ++
Sbjct: 284 KSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMV-----SVESPAKFPPRTFAQHI 338
Query: 290 SVYAEQKFLPKE 301
E K KE
Sbjct: 339 ----EHKLFGKE 346
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 147 bits (372), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 99/312 (31%), Positives = 145/312 (46%), Gaps = 25/312 (8%)
Query: 3 IPVIDFSKLYGEE---RAKTLAQIANACEVWGFFQLVNHGISEELLERVKKVASECYKL- 58
+P ID + ++ R + ++ A WG L+NHGI +L ERVKK E + L
Sbjct: 47 VPTIDLKNIESDDEKIRENCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLS 106
Query: 59 -EREEGFKNSAAVKKLNELVEKKSGEKLENLDWEDVFLL-------SDDNEWPSKTPGFK 110
E +E + N A K+ K + L+WED F D + WP +
Sbjct: 107 VEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYI 166
Query: 111 ETMAEYRSELKKLAENVMEVMDENLGLPKGYIKKAFNGGEGDNAFFGTKVSHYPPCPHPE 170
E +EY L+ LA V + + LGL ++K G E K+++YP CP PE
Sbjct: 167 EATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLE--ELLLQXKINYYPKCPQPE 224
Query: 171 LVNGLRPHTDAGGVILLFQDEKVGGLQILKDEEWIDVQPLPNSIVINTGDQIEVLSNGRY 230
L G+ HTD + + + V GLQ+ + +W+ + +P+SIV + GD +E+LSNG+Y
Sbjct: 225 LALGVEAHTDVSALTFILHN-XVPGLQLFYEGKWVTAKCVPDSIVXHIGDTLEILSNGKY 283
Query: 231 KSIWHRVNATPDGNRRSIASFYNPSL-KATIAPAPELSEKANQEVEQAANYPKFVFGDYM 289
KSI HR + R S A F P K + P PE VE A +P F ++
Sbjct: 284 KSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEXV-----SVESPAKFPPRTFAQHI 338
Query: 290 SVYAEQKFLPKE 301
E K KE
Sbjct: 339 ----EHKLFGKE 346
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 118/272 (43%), Gaps = 30/272 (11%)
Query: 2 AIPVIDFSKLYGEERAKTLAQIANACEVWGFFQLVNHGISEELLERVKKVASECYKLERE 61
AI + FS LY ++ + ++ + E +GF L ++ + + ++ A + L E
Sbjct: 6 AIDPVSFS-LYAKDFTRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVE 64
Query: 62 EGFKNSAAVKK-----LNELVEKKSGEKLENLD--WEDVFLL---------SDDNEWPSK 105
K A VK + VE G +L W L DN WP++
Sbjct: 65 TK-KQYAGVKGGARGYIPFGVETAKGADHYDLKEFWHXGRDLPPGHRFRAHXADNVWPAE 123
Query: 106 TPGFKETMAEYRSELKKLAENVMEVMDENLGLPKGYIKKAFNGGEGDNAFFGTKVSHYPP 165
P FK ++ + L V+E + L L + + K G N+ ++ HYPP
Sbjct: 124 IPAFKHDVSWLYNSLDGXGGKVLEAIATYLKLERDFFKPTVQDG---NSVL--RLLHYPP 178
Query: 166 CPHPELVNGLRP--HTDAGGVILLFQDEKVGGLQIL-KDEEWIDVQPLPNSIVINTGDQI 222
P + G+R H D + LL E+ GGL++L +D +W+ + P P +VIN GD +
Sbjct: 179 IP--KDATGVRAGAHGDINTITLLLGAEE-GGLEVLDRDGQWLPINPPPGCLVINIGDXL 235
Query: 223 EVLSNGRYKSIWHRVNATPDGNRRSIASFYNP 254
E L+N S HRV P RR + + P
Sbjct: 236 ERLTNNVLPSTVHRV-VNPPPERRGVPRYSTP 266
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 71/293 (24%), Positives = 122/293 (41%), Gaps = 38/293 (12%)
Query: 3 IPVIDFSKLYGEERA---KTLAQIANACEVWGFFQLVNHGISEELLERVKK--------- 50
+P ID S L+G+++A + QI A GFF VNHGI+ + L + K
Sbjct: 9 VPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFHMSITPE 68
Query: 51 ----VASECYKLEREE----GFKNSAAVKKLNE-LVEKKSGEKLENLDWEDVFLLSDDNE 101
+A Y E ++ G+ S KK E ++ + + N
Sbjct: 69 EKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHEVNV 128
Query: 102 WPSKT--PGFKETMAEYRSELKKLAENVMEVMDENLGLPKGYIKKAFNGGEGDNAFFGTK 159
WP +T PGF++ +Y ++ L+ +++ LG + + + F + D+
Sbjct: 129 WPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHF---KPDDTLASVV 185
Query: 160 VSHYPPC-PHPE-----LVNGLRP----HTDAGGVILLFQDEKVGGLQILKDEEWIDVQP 209
+ YP P+PE +G + H D + +L+Q V LQ+ + D++
Sbjct: 186 LIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQ-SNVQNLQVETAAGYQDIEA 244
Query: 210 LPNSIVINTGDQIEVLSNGRYKSIWHRVNATPDGNRRSIASFYNPSLKATIAP 262
+IN G + L+N YK+ HRV + R+S+ F N + I P
Sbjct: 245 DDTGYLINCGSYMAHLTNNYYKAPIHRVKWV-NAERQSLPFFVNLGYDSVIDP 296
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 71/293 (24%), Positives = 122/293 (41%), Gaps = 38/293 (12%)
Query: 3 IPVIDFSKLYGEERA---KTLAQIANACEVWGFFQLVNHGISEELLERVKK--------- 50
+P ID S L+G+++A + QI A GFF VNHGI+ + L + K
Sbjct: 9 VPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFHMSITPE 68
Query: 51 ----VASECYKLEREE----GFKNSAAVKKLNE-LVEKKSGEKLENLDWEDVFLLSDDNE 101
+A Y E ++ G+ S KK E ++ + + N
Sbjct: 69 EKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHEVNV 128
Query: 102 WPSKT--PGFKETMAEYRSELKKLAENVMEVMDENLGLPKGYIKKAFNGGEGDNAFFGTK 159
WP +T PGF++ +Y ++ L+ +++ LG + + + F + D+
Sbjct: 129 WPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHF---KPDDTLASVV 185
Query: 160 VSHYPPC-PHPE-----LVNGLRP----HTDAGGVILLFQDEKVGGLQILKDEEWIDVQP 209
+ YP P+PE +G + H D + +L+Q V LQ+ + D++
Sbjct: 186 LIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQ-SNVQNLQVETAAGYQDIEA 244
Query: 210 LPNSIVINTGDQIEVLSNGRYKSIWHRVNATPDGNRRSIASFYNPSLKATIAP 262
+IN G + L+N YK+ HRV + R+S+ F N + I P
Sbjct: 245 DDTGYLINCGSYMAHLTNNYYKAPIHRVKWV-NAERQSLPFFVNLGYDSVIDP 296
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 56/116 (48%), Gaps = 10/116 (8%)
Query: 159 KVSHYPPCPHPELVNGLRP--HTDAGGVILLFQDEKVGGLQI-LKDEEWIDVQPLPNSIV 215
++ HYPP E +R H D +I + GLQ+ KD W+DV +I+
Sbjct: 153 RILHYPPXTGDEEXGAIRAAAHEDIN-LITVLPTANEPGLQVKAKDGSWLDVPSDFGNII 211
Query: 216 INTGDQIEVLSNGRYKSIWHRVNATPDGNRRSIASFYNPSLKATIAPAPE--LSEK 269
IN GD ++ S+G + S HRV P+G ++ + SL + P P LSE+
Sbjct: 212 INIGDXLQEASDGYFPSTSHRV-INPEGTDKTKSRI---SLPLFLHPHPSVVLSER 263
>pdb|2HLS|A Chain A, The Crystal Structure Of A Protein Disulfide
Oxidoreductase From Aeropyrum Pernix K1
pdb|2HLS|B Chain B, The Crystal Structure Of A Protein Disulfide
Oxidoreductase From Aeropyrum Pernix K1
Length = 243
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 62/171 (36%), Gaps = 20/171 (11%)
Query: 5 VIDFSKLYGEERAKTLAQIANACEVWGFFQLVNHGISEELLERVKKVASECYKLEREEGF 64
V+D S+ + E +TLA++ N EV F E+ L +K E E
Sbjct: 6 VLDLSEDFRRELRETLAEMVNPVEVHVFLSKSGCETCEDTLRLMK-------LFEEESPT 58
Query: 65 KNSAAVKKLNELVEKKSGEKLENLDWE---DVFLLSDDNEWPSKTPGFKETMAEYRSELK 121
+N + KLN + +K E V L + W G E++
Sbjct: 59 RNGGKLLKLNVYYRESDSDKFSEFKVERVPTVAFLGGEVRWTGIPAG---------EEIR 109
Query: 122 KLAENVMEVMDENLGLPKGYIKKAFNGGEGDNAFFGTKVSHYPPCPHPELV 172
L E +M + ++ GL K+A +G P CP+ L+
Sbjct: 110 ALVEVIMRLSEDESGLEDA-TKEALKSLKGRVHIETIITPSCPYCPYAVLL 159
>pdb|1XR4|A Chain A, X-ray Crystal Structure Of Putative Citrate Lyase Alpha
Chain/citrate- Acp Transferase [salmonella Typhimurium]
pdb|1XR4|B Chain B, X-ray Crystal Structure Of Putative Citrate Lyase Alpha
Chain/citrate- Acp Transferase [salmonella Typhimurium]
Length = 509
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 75/201 (37%), Gaps = 24/201 (11%)
Query: 40 ISEELLERVKKVASECYKLEREEGFKNSAAVK-----KLNELVEKKSGEKLENLDWEDVF 94
++ E +R +K+ + R G KN + + + V KL + D+
Sbjct: 34 LASETEKRRRKICDSLEEAIRRSGLKNGXTISFHHAFRGGDKVVNXVXAKLAEXGFRDLT 93
Query: 95 LLSD---DNEWPSKTPGFKETMAE--YRSELK-KLAENVMEVMDEN---LGLPKGYIKKA 145
L S D WP K + Y S L+ KL E + + EN + G +K
Sbjct: 94 LASSSLIDAHWP-LIEHIKNGVVRQIYTSGLRGKLGEEISAGLXENPVQIHSHGGRVKLI 152
Query: 146 FNGGEG-DNAFFGTKVSHYPPCPHPELVNGLRPHTDAGGVILLFQDEKVGGLQILKDEEW 204
+G D AF G P C NG + G + D + +L EEW
Sbjct: 153 QSGELNIDVAFLGV-----PCCDEFGNANGFSGKSRCGSLGYAQVDAQYAKCVVLLTEEW 207
Query: 205 IDVQPLPNSIVINTGDQIEVL 225
++ P SI DQ++++
Sbjct: 208 VEFPNYPASI---AQDQVDLI 225
>pdb|2IPC|A Chain A, Crystal Structure Of The Translocation Atpase Seca From
Thermus Thermophilus Reveals A Parallel, Head-To-Head
Dimer
pdb|2IPC|B Chain B, Crystal Structure Of The Translocation Atpase Seca From
Thermus Thermophilus Reveals A Parallel, Head-To-Head
Dimer
pdb|2IPC|C Chain C, Crystal Structure Of The Translocation Atpase Seca From
Thermus Thermophilus Reveals A Parallel, Head-To-Head
Dimer
pdb|2IPC|D Chain D, Crystal Structure Of The Translocation Atpase Seca From
Thermus Thermophilus Reveals A Parallel, Head-To-Head
Dimer
Length = 997
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 39 GISEELLERVKKVASEC 55
GI EELLER++++ EC
Sbjct: 632 GIREELLERIREIREEC 648
>pdb|2KMM|A Chain A, Solution Nmr Structure Of The Tgs Domain Of Pg1808 From
Porphyromonas Gingivalis. Northeast Structural Genomics
Consortium Target Pgr122a (418-481)
Length = 73
Score = 27.7 bits (60), Expect = 8.0, Method: Composition-based stats.
Identities = 11/18 (61%), Positives = 16/18 (88%)
Query: 210 LPNSIVINTGDQIEVLSN 227
+P S V+N+GDQ+EVLS+
Sbjct: 46 VPLSYVLNSGDQVEVLSS 63
>pdb|3CM8|A Chain A, A Rna Polymerase Subunit Structure From Virus
Length = 471
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 39 GISEELLERVKKVASECYKLEREEGFKNSAAVKKLNELVEKKSGEKL--ENLDWEDVFLL 96
GI+ L K+V +E +E EE + ++K ++L + GE + E +D+ED +
Sbjct: 84 GINPNYLLAWKQVLAELQDIENEEKIPKTKNMRKTSQL-KWALGENMAPEKVDFEDCKDV 142
Query: 97 SDDNEWPSKTPGFKETMAEYRSELKKLAE 125
SD ++ S P + + +SE K E
Sbjct: 143 SDLRQYDSDEPKPRSLASWIQSEFNKACE 171
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,999,980
Number of Sequences: 62578
Number of extensions: 444603
Number of successful extensions: 934
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 895
Number of HSP's gapped (non-prelim): 44
length of query: 310
length of database: 14,973,337
effective HSP length: 99
effective length of query: 211
effective length of database: 8,778,115
effective search space: 1852182265
effective search space used: 1852182265
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)