BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021591
(310 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|21553676|gb|AAM62769.1| 50S ribosomal protein L4 [Arabidopsis thaliana]
Length = 300
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 239/314 (76%), Positives = 268/314 (85%), Gaps = 18/314 (5%)
Query: 1 MALTVSRRLLRRFGSFSAFGRYESPSLTSRSIRSPPDLYVACSGDNLFPL----KSGLSF 56
MA ++SRR+ R FGSFSA GR SP+L++ + SG+ L L K G++
Sbjct: 1 MAASISRRIFRTFGSFSALGRSSSPNLSANT-----------SGNGLASLTNDLKYGMAL 49
Query: 57 LASRKFSTTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVL 116
L++RK ST+ILTPD S FPSDLL KKTVLTPD TIG +QDLVIPVTNF NE+KGFMVL
Sbjct: 50 LSNRKLSTSILTPDDS---FPSDLLTKKTVLTPDRTIGQYQDLVIPVTNFQNEEKGFMVL 106
Query: 117 AGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLR 176
AGDVFDVPIRKDIIH VVRWQLAKRQQGTHSTKT+SEVSGTG+KPW QKGTGRARHGTLR
Sbjct: 107 AGDVFDVPIRKDIIHNVVRWQLAKRQQGTHSTKTLSEVSGTGRKPWNQKGTGRARHGTLR 166
Query: 177 GPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFI 236
GPQFRGG MHGPKPRSHAIK+NK+VRRLGLKIAL+ARAAEGKLLVF+DL +P+HKTK I
Sbjct: 167 GPQFRGGCVMHGPKPRSHAIKMNKQVRRLGLKIALTARAAEGKLLVFDDLGLPTHKTKNI 226
Query: 237 VNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDA 296
VNYYNQMENTKKVL+ +GG I EKLKLATQNLHYVN++PS+GLNVYSIL HDTLVMSRDA
Sbjct: 227 VNYYNQMENTKKVLVVEGGPIDEKLKLATQNLHYVNIIPSIGLNVYSILLHDTLVMSRDA 286
Query: 297 VNKIVDRMHTPINR 310
VNKIV+RMHTPINR
Sbjct: 287 VNKIVERMHTPINR 300
>gi|18399235|ref|NP_565463.1| large subunit ribosomal protein L4 [Arabidopsis thaliana]
gi|18252969|gb|AAL62411.1| 50S ribosomal protein L4 [Arabidopsis thaliana]
gi|20197568|gb|AAD24390.2| 50S ribosomal protein L4 [Arabidopsis thaliana]
gi|25084070|gb|AAN72167.1| 50S ribosomal protein L4 [Arabidopsis thaliana]
gi|330251866|gb|AEC06960.1| large subunit ribosomal protein L4 [Arabidopsis thaliana]
Length = 300
Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust.
Identities = 238/314 (75%), Positives = 268/314 (85%), Gaps = 18/314 (5%)
Query: 1 MALTVSRRLLRRFGSFSAFGRYESPSLTSRSIRSPPDLYVACSGDNLFPL----KSGLSF 56
MA ++SRR+ R FGSFSA GR SP+L++ + SG+ L L K G++
Sbjct: 1 MAASISRRIFRTFGSFSALGRSSSPNLSANT-----------SGNGLASLTNDLKYGMAL 49
Query: 57 LASRKFSTTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVL 116
L++RK ST+ILTPD S FPSDLL KKTVLTPD TIG +QDLVIPVTNF NE+KGFMVL
Sbjct: 50 LSNRKLSTSILTPDDS---FPSDLLTKKTVLTPDRTIGQYQDLVIPVTNFQNEEKGFMVL 106
Query: 117 AGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLR 176
AGDVFDVPIRKDIIH VVRWQLAKRQQGTHSTKT+SEVSGTG+KPW QKGTGRARHGTLR
Sbjct: 107 AGDVFDVPIRKDIIHNVVRWQLAKRQQGTHSTKTLSEVSGTGRKPWNQKGTGRARHGTLR 166
Query: 177 GPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFI 236
GPQFRGG MHGPKPRSHAIK+NK+VRRLGLKIAL+ARAAEGKLLVF+DL +P+HKTK I
Sbjct: 167 GPQFRGGCVMHGPKPRSHAIKMNKQVRRLGLKIALTARAAEGKLLVFDDLGLPTHKTKNI 226
Query: 237 VNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDA 296
VNYYNQMENTKKVL+ +GG I EKLKLATQNLHYVN++PS+GLNVYSIL HDTL+MSRDA
Sbjct: 227 VNYYNQMENTKKVLVVEGGPIDEKLKLATQNLHYVNIIPSIGLNVYSILLHDTLLMSRDA 286
Query: 297 VNKIVDRMHTPINR 310
VNKIV+RMHTPINR
Sbjct: 287 VNKIVERMHTPINR 300
>gi|255554769|ref|XP_002518422.1| 50S ribosomal protein L4, putative [Ricinus communis]
gi|223542267|gb|EEF43809.1| 50S ribosomal protein L4, putative [Ricinus communis]
Length = 294
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 237/310 (76%), Positives = 263/310 (84%), Gaps = 16/310 (5%)
Query: 1 MALTVSRRLLRRFGSFSAFGRYESPSLTSRSIRSPPDLYVACSGDNLFPLKSGLSFLASR 60
MA+++SRR+LR F S PSLT +S R+ S ++ +K+G + LA R
Sbjct: 1 MAVSISRRILRSFRSL--------PSLTHQSFRA--------SHESSSFIKNGAASLACR 44
Query: 61 KFSTTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLAGDV 120
K ST+ILTP SS+ AFPSDLL KT+LTP+ IGLH+DLVIPVTNF NEDKGFMVLAGDV
Sbjct: 45 KLSTSILTPGSSDDAFPSDLLSTKTLLTPEREIGLHEDLVIPVTNFLNEDKGFMVLAGDV 104
Query: 121 FDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQF 180
FDVPI+K IIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP+RQKGTGRARHGTLRGPQF
Sbjct: 105 FDVPIKKHIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPYRQKGTGRARHGTLRGPQF 164
Query: 181 RGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYY 240
RGG TMHGPKPRSHAIK NKKVRRLGLKIAL+ARAAEGKLLVFEDLE+P+HKTK IVNY
Sbjct: 165 RGGATMHGPKPRSHAIKCNKKVRRLGLKIALTARAAEGKLLVFEDLEIPTHKTKNIVNYV 224
Query: 241 NQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNKI 300
QME TKK+LL DGG I+EKLKLA QNLHYVNVLPS+GLNVYSIL HDTLVMSRDAVN+I
Sbjct: 225 KQMEETKKLLLVDGGPINEKLKLAAQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVNRI 284
Query: 301 VDRMHTPINR 310
V+RMHTPINR
Sbjct: 285 VERMHTPINR 294
>gi|449433990|ref|XP_004134779.1| PREDICTED: 50S ribosomal protein L4-like [Cucumis sativus]
gi|449531047|ref|XP_004172499.1| PREDICTED: 50S ribosomal protein L4-like [Cucumis sativus]
Length = 315
Score = 469 bits (1207), Expect = e-130, Method: Compositional matrix adjust.
Identities = 236/315 (74%), Positives = 263/315 (83%), Gaps = 5/315 (1%)
Query: 1 MALTVSRRLLRRFGSFSAFGRYESPSLTSRSIRSPPDLYVACSGDN-LFPLKSGL----S 55
MA++VSRRLLR GS S FG+ S SRS +P ++Y SG + F +S L S
Sbjct: 1 MAISVSRRLLRSVGSLSTFGQCNSSCTMSRSFSNPHEIYGHVSGSSSTFASRSTLLKAGS 60
Query: 56 FLASRKFSTTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMV 115
FLASR F T+ILTP+SS AFPS+LL K V + + IGL+QDL+IPVTNF NEDKGFMV
Sbjct: 61 FLASRGFCTSILTPESSNNAFPSELLSAKPVASEERKIGLYQDLMIPVTNFENEDKGFMV 120
Query: 116 LAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTL 175
LAGDVFD+PIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG+KPW+QKGTGRARHGTL
Sbjct: 121 LAGDVFDLPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWKQKGTGRARHGTL 180
Query: 176 RGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKF 235
RGPQFRGG TMHGPKPRSHA KLNKKVRRLGL IALSAR AEGKLLVF++L+V +HKTK
Sbjct: 181 RGPQFRGGATMHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGKLLVFDNLDVTTHKTKN 240
Query: 236 IVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRD 295
+V Y ++MENTKKVLL DGG I EKLKLATQNLHYVNVLPS+GLNVYSIL HDTLVMSRD
Sbjct: 241 MVKYVSKMENTKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRD 300
Query: 296 AVNKIVDRMHTPINR 310
AV +IV RMHTPINR
Sbjct: 301 AVERIVTRMHTPINR 315
>gi|359494830|ref|XP_003634850.1| PREDICTED: 50S ribosomal protein L4-like [Vitis vinifera]
gi|297741766|emb|CBI32995.3| unnamed protein product [Vitis vinifera]
Length = 315
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 238/315 (75%), Positives = 256/315 (81%), Gaps = 5/315 (1%)
Query: 1 MALTVSRRLLRRFGSFSAFGRYESPSLTSRSIRSPPDLYVACSGDNLFPLKSGLS----- 55
MA+++SRRLLR FG FG SP + R+ L S D LF S
Sbjct: 1 MAVSISRRLLRTFGPSRVFGHCNSPMIMCPLFRTSDALCGLVSQDGLFSTDSSCKTGSSF 60
Query: 56 FLASRKFSTTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMV 115
+ +TTILTP+SS AFP +LL KTVLTP+ T G +QDLVIPVTNF NEDKGFMV
Sbjct: 61 LSSRSLSTTTILTPESSGVAFPPELLSTKTVLTPERTPGHYQDLVIPVTNFHNEDKGFMV 120
Query: 116 LAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTL 175
LAGDVFDVPIRKDI+HRVVRWQLAKRQQGTHSTKTISEVSGTG+KPWRQKGTGRARHGTL
Sbjct: 121 LAGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWRQKGTGRARHGTL 180
Query: 176 RGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKF 235
RGPQFRGG MHGPKPRSHAIKLNKKVRRLGLKIALSAR AEGKLLVF+DLEVPSHKTK
Sbjct: 181 RGPQFRGGAIMHGPKPRSHAIKLNKKVRRLGLKIALSARTAEGKLLVFDDLEVPSHKTKN 240
Query: 236 IVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRD 295
IVNY +MENTKK+LL DGG I EKLKLATQNLHYVNVLPS+GLNVYSIL HDTLVMSRD
Sbjct: 241 IVNYVKEMENTKKLLLVDGGPITEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRD 300
Query: 296 AVNKIVDRMHTPINR 310
AVNKIV+RMHTPINR
Sbjct: 301 AVNKIVERMHTPINR 315
>gi|297836242|ref|XP_002886003.1| 50S ribosomal protein L4 [Arabidopsis lyrata subsp. lyrata]
gi|297331843|gb|EFH62262.1| 50S ribosomal protein L4 [Arabidopsis lyrata subsp. lyrata]
Length = 297
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 232/314 (73%), Positives = 263/314 (83%), Gaps = 21/314 (6%)
Query: 1 MALTVSRRLLRRFGSFSAFGRYESPSLTSRSIRSPPDLYVACSGDNLFPLKS----GLSF 56
MA ++S R+ R FGS GR SP+L++ + SG+ L L S G++
Sbjct: 1 MAASISARIFRTFGSL---GRCSSPNLSANT-----------SGNGLSSLTSDLKYGMAL 46
Query: 57 LASRKFSTTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVL 116
L++RK ST ILTPD + FPSDLL KKTVLTPD TIG +QDLVIPVTNF +E+KGFMVL
Sbjct: 47 LSNRKLSTCILTPDDT---FPSDLLTKKTVLTPDRTIGQYQDLVIPVTNFQSEEKGFMVL 103
Query: 117 AGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLR 176
AGDVFDVPIRKDIIH VVRWQLAKRQQGTHSTKT+SEVSGTG+KPW QKGTGRARHGTLR
Sbjct: 104 AGDVFDVPIRKDIIHNVVRWQLAKRQQGTHSTKTLSEVSGTGRKPWNQKGTGRARHGTLR 163
Query: 177 GPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFI 236
GPQFRGG MHGPKPRSHAIK+NK+VRRLGLKIAL+ARAAEGKLLVF+DL +P+HKTK I
Sbjct: 164 GPQFRGGCVMHGPKPRSHAIKMNKQVRRLGLKIALTARAAEGKLLVFDDLALPTHKTKNI 223
Query: 237 VNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDA 296
VNYYNQMENTKKVL+ +GG I EKLKLATQNLHYVN++PS+GLNVYSIL HDTLVMSRDA
Sbjct: 224 VNYYNQMENTKKVLVVEGGPIDEKLKLATQNLHYVNIIPSIGLNVYSILLHDTLVMSRDA 283
Query: 297 VNKIVDRMHTPINR 310
VNKIV+RM+TPINR
Sbjct: 284 VNKIVERMNTPINR 297
>gi|363807964|ref|NP_001242456.1| uncharacterized protein LOC100804238 [Glycine max]
gi|255635327|gb|ACU18017.1| unknown [Glycine max]
Length = 312
Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust.
Identities = 230/313 (73%), Positives = 258/313 (82%), Gaps = 4/313 (1%)
Query: 1 MALTVSRRLLR-RFGSFSAFGR--YESPSLTSRSIRSPPDLYVACSGDNLFPLKSGLSFL 57
MA +S+R+LR S + GR ++SPS SI P D+ + SG+ + P L
Sbjct: 1 MAALISKRILRCSSWSLHSLGRCYFDSPSAGFASIYKPRDVCSSLSGERMLPADRSLVRS 60
Query: 58 ASRKFSTTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLA 117
R+FST+ILTP + + AFPSDLL KKT+ T + TIGL QDL+IPVTNF NEDKG+MV
Sbjct: 61 MVRQFSTSILTPGADDSAFPSDLLSKKTLATSERTIGLCQDLLIPVTNFHNEDKGYMVFP 120
Query: 118 GDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRG 177
GDVFD+PIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG+KPW QKGTGRARHG+LRG
Sbjct: 121 GDVFDLPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWNQKGTGRARHGSLRG 180
Query: 178 PQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIV 237
PQFRGG TMHGPKPRSHA K+NKKVR LGLKIALSARAAEGKLLVFEDLEVP+HKTK IV
Sbjct: 181 PQFRGGATMHGPKPRSHAFKVNKKVRCLGLKIALSARAAEGKLLVFEDLEVPTHKTKNIV 240
Query: 238 NYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAV 297
NYYNQME+TKK+LL D G I EKLKL+TQNLHYVNVLPS+GLNVYSIL HDTLVMSR AV
Sbjct: 241 NYYNQMEDTKKLLLVD-GTIDEKLKLSTQNLHYVNVLPSIGLNVYSILLHDTLVMSRAAV 299
Query: 298 NKIVDRMHTPINR 310
KIV+RMHTPINR
Sbjct: 300 TKIVERMHTPINR 312
>gi|356532241|ref|XP_003534682.1| PREDICTED: 50S ribosomal protein L4-like [Glycine max]
Length = 310
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 230/313 (73%), Positives = 257/313 (82%), Gaps = 6/313 (1%)
Query: 1 MALTVSRRLLR-RFGSFSAFGR--YESPSLTSRSIRSPPDLYVACSGDNLFPLKSGLSFL 57
MA +S+R+LR GS + GR ++SP S I P D+ SG+ +F L
Sbjct: 1 MAALISKRILRCSSGSLHSLGRCYFDSPGFAS--IYKPRDVCGGLSGERMFSADRSLVGS 58
Query: 58 ASRKFSTTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLA 117
R+FST+ILTP + AFPSDLL KK + T + TIGL QDL+IPVTNF NEDKG+MVL
Sbjct: 59 MVRQFSTSILTPGDDDSAFPSDLLSKKILATSERTIGLCQDLLIPVTNFHNEDKGYMVLP 118
Query: 118 GDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRG 177
GDVFD+PIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG+KPW QKGTGRARHG+LRG
Sbjct: 119 GDVFDLPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWNQKGTGRARHGSLRG 178
Query: 178 PQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIV 237
PQFRGG TMHGPKPRSHA K+NKKVRRLGLKIALSARAAEGKLLVFEDL VP+HKTK IV
Sbjct: 179 PQFRGGATMHGPKPRSHAFKVNKKVRRLGLKIALSARAAEGKLLVFEDLAVPTHKTKNIV 238
Query: 238 NYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAV 297
NYYNQME+TKK+LL D G I EKLKL+TQNLHYVNVLPS+GLNVYSIL HDTLVMSR AV
Sbjct: 239 NYYNQMEDTKKLLLVD-GAIDEKLKLSTQNLHYVNVLPSIGLNVYSILLHDTLVMSRAAV 297
Query: 298 NKIVDRMHTPINR 310
+KIV+RMHTPINR
Sbjct: 298 SKIVERMHTPINR 310
>gi|147767815|emb|CAN77922.1| hypothetical protein VITISV_027648 [Vitis vinifera]
Length = 278
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 214/248 (86%), Positives = 227/248 (91%)
Query: 63 STTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLAGDVFD 122
+TT+LTP+SS AFP +LL KTVLTP+ T G +QDLVIPVTNF NEDKGFM LAGDVFD
Sbjct: 31 TTTMLTPESSGVAFPPELLSTKTVLTPERTPGHYQDLVIPVTNFHNEDKGFMXLAGDVFD 90
Query: 123 VPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRG 182
VPIRKDI+HRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRG
Sbjct: 91 VPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRG 150
Query: 183 GTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQ 242
G MHGPKPRSHAIKLNKKVRRLGLKIALSAR AEGKLLVF+DLEVPSHKTK IVNY +
Sbjct: 151 GAIMHGPKPRSHAIKLNKKVRRLGLKIALSARTAEGKLLVFDDLEVPSHKTKNIVNYVKE 210
Query: 243 MENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNKIVD 302
MEN KK+LL DGG I EKLKLATQNLHYVNVLPS+GLNVYSIL HDTLVMSRBAVNKIV+
Sbjct: 211 MENXKKLLLVDGGPITEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRBAVNKIVE 270
Query: 303 RMHTPINR 310
RMHTPINR
Sbjct: 271 RMHTPINR 278
>gi|224118096|ref|XP_002331557.1| predicted protein [Populus trichocarpa]
gi|222873781|gb|EEF10912.1| predicted protein [Populus trichocarpa]
Length = 285
Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust.
Identities = 224/316 (70%), Positives = 249/316 (78%), Gaps = 37/316 (11%)
Query: 1 MALTVSRRLLRRFGSFSAFGRY-ESPSLTSRSIRSPPDLYVACSGDNLFPLKSGLSFLAS 59
MAL++SRR+LR FGS S FGR +S SLT
Sbjct: 1 MALSISRRVLRSFGSLSGFGRCGDSSSLT------------------------------- 29
Query: 60 RKFSTTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLAGD 119
R+ ST+ +T +S++G+FPSDLL K V+TP IGL+QDLVIPVTNF NEDKG MVLAGD
Sbjct: 30 RQLSTSNVTSESTDGSFPSDLLSAKNVVTPQREIGLYQDLVIPVTNFHNEDKGLMVLAGD 89
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG+KP+RQKGTGRARHGTLRGPQ
Sbjct: 90 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPYRQKGTGRARHGTLRGPQ 149
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSA-----RAAEGKLLVFEDLEVPSHKTK 234
FRGG MHGPKPRSHA KLNKKVRRLGLKIAL+A +LLVFEDLEVP+HKTK
Sbjct: 150 FRGGAVMHGPKPRSHAFKLNKKVRRLGLKIALTAPIILIEFLNAQLLVFEDLEVPTHKTK 209
Query: 235 FIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSR 294
IVNY +MENTKK+L+ DGG I+EKLKLATQNLHYVN+LPS+GLNVYSILQHDTLVMSR
Sbjct: 210 NIVNYVIEMENTKKLLVVDGGPINEKLKLATQNLHYVNLLPSIGLNVYSILQHDTLVMSR 269
Query: 295 DAVNKIVDRMHTPINR 310
DAVNKIV+RMHTPI R
Sbjct: 270 DAVNKIVERMHTPIKR 285
>gi|388496888|gb|AFK36510.1| unknown [Lotus japonicus]
Length = 305
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 212/313 (67%), Positives = 243/313 (77%), Gaps = 11/313 (3%)
Query: 1 MALTVSRRLLRRFGSFSAFGRYESPSLTSRSIRSPPDLYVACSGDNLFPLKSGLSFLAS- 59
MA +S+RLLR S + GR R D+ + SG+ F + LA
Sbjct: 1 MAALISKRLLRSSESLHSLGR--------RCFHQSRDICSSLSGERRFSAQRPGLLLARS 52
Query: 60 --RKFSTTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLA 117
++F T++ P EGAFPSDLL K + T + IGL QDL+IPVTNF NEDKG MVLA
Sbjct: 53 MIQRFCTSVSVPGYHEGAFPSDLLSNKPLATSERDIGLCQDLLIPVTNFHNEDKGLMVLA 112
Query: 118 GDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRG 177
GDVFDVPIRKDIIHRVVRWQLA+RQQGTHSTKT+SEV GTG+K ++QKG G+ARHG+ R
Sbjct: 113 GDVFDVPIRKDIIHRVVRWQLARRQQGTHSTKTVSEVRGTGRKMYKQKGLGKARHGSQRV 172
Query: 178 PQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIV 237
FRGG MHGPKPRSHA KLNKKVRRLGLKIALSARAAEGKLLVFEDL+V +HKTK IV
Sbjct: 173 HLFRGGAAMHGPKPRSHAFKLNKKVRRLGLKIALSARAAEGKLLVFEDLDVLTHKTKNIV 232
Query: 238 NYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAV 297
NY+ QME++KK+LL DGG I+EKLKLATQNLHYVNVLPS+GLNVYSIL HDTLVMSRDAV
Sbjct: 233 NYFKQMEDSKKLLLVDGGPINEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAV 292
Query: 298 NKIVDRMHTPINR 310
NKIV+RMHTPI+R
Sbjct: 293 NKIVERMHTPISR 305
>gi|242072798|ref|XP_002446335.1| hypothetical protein SORBIDRAFT_06g014470 [Sorghum bicolor]
gi|241937518|gb|EES10663.1| hypothetical protein SORBIDRAFT_06g014470 [Sorghum bicolor]
Length = 333
Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust.
Identities = 201/247 (81%), Positives = 219/247 (88%), Gaps = 1/247 (0%)
Query: 64 TTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLAGDVFDV 123
+T+L P SE P +LL +TV TPD +G ++DLV VTNF NEDKGFMVL GDVFDV
Sbjct: 88 STLLAP-PSEVLIPPELLSSRTVWTPDRELGQYEDLVARVTNFHNEDKGFMVLDGDVFDV 146
Query: 124 PIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGG 183
PIRKDI+HRVVRWQLAKRQQGTHSTKTISEVSGTG+KP++QKGTGRARHGTLRGPQFRGG
Sbjct: 147 PIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPYKQKGTGRARHGTLRGPQFRGG 206
Query: 184 TTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQM 243
TMHGPKPRSHAIKL KKVRRLGLKIALSAR AEGKLLVFEDLEVPSHKTK IV Y QM
Sbjct: 207 ATMHGPKPRSHAIKLQKKVRRLGLKIALSARTAEGKLLVFEDLEVPSHKTKNIVQYIRQM 266
Query: 244 ENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNKIVDR 303
++TKKVLL DGG I +KLKLATQNLHYVNVLPS+GLNVYSILQHDTLVMSR A+N+IV+R
Sbjct: 267 DDTKKVLLVDGGDIDKKLKLATQNLHYVNVLPSIGLNVYSILQHDTLVMSRAAINRIVER 326
Query: 304 MHTPINR 310
MHTPINR
Sbjct: 327 MHTPINR 333
>gi|222616220|gb|EEE52352.1| hypothetical protein OsJ_34399 [Oryza sativa Japonica Group]
Length = 353
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 199/247 (80%), Positives = 219/247 (88%), Gaps = 1/247 (0%)
Query: 64 TTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLAGDVFDV 123
+T+L P ++E P +LL KTV TPD +G ++DLV VTNF NEDKGFMVL GDVFDV
Sbjct: 108 STLLAP-ANEVLIPQELLSSKTVWTPDRELGQYEDLVARVTNFHNEDKGFMVLDGDVFDV 166
Query: 124 PIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGG 183
PIRKDI+HRVVRWQLAKRQQGTHSTKTISEVSGTG+KP+ QKGTGRARHGTLRGPQFRGG
Sbjct: 167 PIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPYNQKGTGRARHGTLRGPQFRGG 226
Query: 184 TTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQM 243
TMHGPKPRSHAIKL KKVRRLGLKIALSAR AEGKLLVF+DLEVPSHKTK IV Y QM
Sbjct: 227 ATMHGPKPRSHAIKLQKKVRRLGLKIALSARTAEGKLLVFDDLEVPSHKTKNIVQYIGQM 286
Query: 244 ENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNKIVDR 303
E TKKVLL DGG I +KLKLATQNLHYVNVLPS+GLNVYSILQHDTLVM+R+A+N+IV+R
Sbjct: 287 EGTKKVLLVDGGDIDKKLKLATQNLHYVNVLPSIGLNVYSILQHDTLVMTRNAINRIVER 346
Query: 304 MHTPINR 310
MHTPI+R
Sbjct: 347 MHTPISR 353
>gi|242032629|ref|XP_002463709.1| hypothetical protein SORBIDRAFT_01g004650 [Sorghum bicolor]
gi|241917563|gb|EER90707.1| hypothetical protein SORBIDRAFT_01g004650 [Sorghum bicolor]
Length = 294
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 200/247 (80%), Positives = 219/247 (88%), Gaps = 1/247 (0%)
Query: 64 TTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLAGDVFDV 123
+T+L P SE P +LL +TV TPD +G ++DLV VTNF NEDKGFMVL GDVFDV
Sbjct: 49 STLLAP-PSEVLIPPELLSSRTVWTPDRELGQYEDLVARVTNFHNEDKGFMVLDGDVFDV 107
Query: 124 PIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGG 183
PIRKDI+HRVVRWQLAKRQQGTHSTKTISEVSGTG+KP++QKGTGRARHGTLRGPQFRGG
Sbjct: 108 PIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPYKQKGTGRARHGTLRGPQFRGG 167
Query: 184 TTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQM 243
TMHGPKPRSHAIKL KKVRRLGLKIALSAR AEGKLLVFEDLEVPSHKTK IV Y QM
Sbjct: 168 ATMHGPKPRSHAIKLQKKVRRLGLKIALSARTAEGKLLVFEDLEVPSHKTKNIVQYIRQM 227
Query: 244 ENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNKIVDR 303
++TKKVLL DGG I +KLKLATQNLHYVNVLPS+GLNVYSILQHDTLVM+R A+N+IV+R
Sbjct: 228 DDTKKVLLVDGGDIDKKLKLATQNLHYVNVLPSIGLNVYSILQHDTLVMTRAAINRIVER 287
Query: 304 MHTPINR 310
MHTPINR
Sbjct: 288 MHTPINR 294
>gi|115486043|ref|NP_001068165.1| Os11g0585700 [Oryza sativa Japonica Group]
gi|77551649|gb|ABA94446.1| ribosomal protein L4/L1 family protein, expressed [Oryza sativa
Japonica Group]
gi|113645387|dbj|BAF28528.1| Os11g0585700 [Oryza sativa Japonica Group]
Length = 286
Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust.
Identities = 199/247 (80%), Positives = 219/247 (88%), Gaps = 1/247 (0%)
Query: 64 TTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLAGDVFDV 123
+T+L P ++E P +LL KTV TPD +G ++DLV VTNF NEDKGFMVL GDVFDV
Sbjct: 41 STLLAP-ANEVLIPQELLSSKTVWTPDRELGQYEDLVARVTNFHNEDKGFMVLDGDVFDV 99
Query: 124 PIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGG 183
PIRKDI+HRVVRWQLAKRQQGTHSTKTISEVSGTG+KP+ QKGTGRARHGTLRGPQFRGG
Sbjct: 100 PIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPYNQKGTGRARHGTLRGPQFRGG 159
Query: 184 TTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQM 243
TMHGPKPRSHAIKL KKVRRLGLKIALSAR AEGKLLVF+DLEVPSHKTK IV Y QM
Sbjct: 160 ATMHGPKPRSHAIKLQKKVRRLGLKIALSARTAEGKLLVFDDLEVPSHKTKNIVQYIGQM 219
Query: 244 ENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNKIVDR 303
E TKKVLL DGG I +KLKLATQNLHYVNVLPS+GLNVYSILQHDTLVM+R+A+N+IV+R
Sbjct: 220 EGTKKVLLVDGGDIDKKLKLATQNLHYVNVLPSIGLNVYSILQHDTLVMTRNAINRIVER 279
Query: 304 MHTPINR 310
MHTPI+R
Sbjct: 280 MHTPISR 286
>gi|326524247|dbj|BAK00507.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 289
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 203/287 (70%), Positives = 232/287 (80%), Gaps = 4/287 (1%)
Query: 24 SPSLTSRSIRSPPDLYVACSGDNLFPLKSGLSFLASRKFSTTILTPDSSEGAFPSDLLLK 83
+ S+ R++ PP L G + L L + S +ST L ++E P +LL
Sbjct: 7 AASILRRAVACPPQL--GAVGRDTSLLAKILPNVYSNGYST--LMAPANEVLIPPELLSS 62
Query: 84 KTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQ 143
KTV TPD +G ++DLV VTNF NEDKGFMVL GDVFDVPIRKDI+HRVVRWQLAKRQQ
Sbjct: 63 KTVWTPDRELGQYEDLVARVTNFHNEDKGFMVLDGDVFDVPIRKDIVHRVVRWQLAKRQQ 122
Query: 144 GTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVR 203
GTHSTKTISEVSGTG+KP++QKGTGRARHGTLRG QFRGG TMHGPKPRSHA KL KKVR
Sbjct: 123 GTHSTKTISEVSGTGRKPYKQKGTGRARHGTLRGCQFRGGATMHGPKPRSHAFKLQKKVR 182
Query: 204 RLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKL 263
RLGLKIALSAR AEGKL +FEDLEVPSHKTK IV Y QM++TKK+LL DGG I +KLKL
Sbjct: 183 RLGLKIALSARTAEGKLCIFEDLEVPSHKTKNIVQYIKQMDDTKKILLVDGGDIDKKLKL 242
Query: 264 ATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNKIVDRMHTPINR 310
ATQNLHYVNV+PS+GLNVYSILQHDTLVM+RDA+N+IV+RMHTPI+R
Sbjct: 243 ATQNLHYVNVIPSIGLNVYSILQHDTLVMTRDAINRIVERMHTPISR 289
>gi|357156335|ref|XP_003577421.1| PREDICTED: 50S ribosomal protein L4-like [Brachypodium distachyon]
Length = 289
Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust.
Identities = 194/247 (78%), Positives = 217/247 (87%), Gaps = 1/247 (0%)
Query: 64 TTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLAGDVFDV 123
+T+L P ++EG PS+LL KTV TPD +G ++DLV VTNF NEDKGFMVL GDVFDV
Sbjct: 44 STLLAP-ANEGMIPSELLSSKTVWTPDRELGQYEDLVARVTNFHNEDKGFMVLDGDVFDV 102
Query: 124 PIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGG 183
PIRKDI+HRVVRWQLAKRQQGTHSTKTISEVSGTG+KP+ QKGTGRARHGTLRG QFRGG
Sbjct: 103 PIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPYAQKGTGRARHGTLRGCQFRGG 162
Query: 184 TTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQM 243
TMHGPKPRSHA KL KKVRRLGLKIALSAR AEGKL +F+DL++PSHKTK IV Y QM
Sbjct: 163 ATMHGPKPRSHAFKLQKKVRRLGLKIALSARTAEGKLCIFDDLDLPSHKTKNIVQYIKQM 222
Query: 244 ENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNKIVDR 303
+ TKKVLL DGG I +KLKLATQNLHYVNV+PS+GLNVYSILQHDTLVM+R A+N+IV+R
Sbjct: 223 DETKKVLLVDGGDIDKKLKLATQNLHYVNVIPSIGLNVYSILQHDTLVMTRAAINRIVER 282
Query: 304 MHTPINR 310
MHTPINR
Sbjct: 283 MHTPINR 289
>gi|226491762|ref|NP_001147335.1| LOC100280943 [Zea mays]
gi|195610184|gb|ACG26922.1| 50S ribosomal protein L4 [Zea mays]
Length = 293
Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust.
Identities = 206/294 (70%), Positives = 231/294 (78%), Gaps = 9/294 (3%)
Query: 17 SAFGRYESPSLTSRSIRSPPDLYVACSGDNLFPLKSGLSFLASRKFSTTILTPDSSEGAF 76
S R + T+ S+ PP C NL G F +ST + P+ E
Sbjct: 9 SLLRRASGSAPTTASLYHPPRNVGPCLVKNL----PGFFF---NGYSTLLAPPN--EVLI 59
Query: 77 PSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRW 136
P +LL +TV TPD +G ++DLV VTNF NEDKGFMVL GDVFDVPIRKDI+HRVVRW
Sbjct: 60 PPELLSSRTVWTPDRELGQYEDLVARVTNFHNEDKGFMVLDGDVFDVPIRKDIVHRVVRW 119
Query: 137 QLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAI 196
QLAKRQQGTHSTKTISEVSGTG+KP+ QKGTG+ARHGTLRG QFRGG TMHGPKPRSHAI
Sbjct: 120 QLAKRQQGTHSTKTISEVSGTGRKPYPQKGTGKARHGTLRGAQFRGGATMHGPKPRSHAI 179
Query: 197 KLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGC 256
KL KKVRRLGLKIALSAR AEGKLL+FEDLEVPSHKTK IV Y QM+++KKVLL DGG
Sbjct: 180 KLQKKVRRLGLKIALSARTAEGKLLIFEDLEVPSHKTKNIVQYIRQMDDSKKVLLVDGGD 239
Query: 257 IHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNKIVDRMHTPINR 310
I +KLKLATQNLHYVNVLPS+GLNVYSILQHDTLVM+R A+N+IV+RMHTPINR
Sbjct: 240 IDKKLKLATQNLHYVNVLPSIGLNVYSILQHDTLVMTRAAINRIVERMHTPINR 293
>gi|414873447|tpg|DAA52004.1| TPA: 50S ribosomal protein L4 [Zea mays]
Length = 293
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 206/294 (70%), Positives = 231/294 (78%), Gaps = 9/294 (3%)
Query: 17 SAFGRYESPSLTSRSIRSPPDLYVACSGDNLFPLKSGLSFLASRKFSTTILTPDSSEGAF 76
S R + T+ S+ PP C NL G F +ST + P+ E
Sbjct: 9 SLLRRAAGSAPTTASLYHPPRNVGPCLVKNL----PGFFF---NGYSTLLAPPN--EVLI 59
Query: 77 PSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRW 136
P +LL +TV TPD +G ++DLV VTNF NEDKGFMVL GDVFDVPIRKDI+HRVVRW
Sbjct: 60 PPELLSSRTVWTPDRELGQYEDLVARVTNFHNEDKGFMVLDGDVFDVPIRKDIVHRVVRW 119
Query: 137 QLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAI 196
QLAKRQQGTHSTKTISEVSGTG+KP+ QKGTG+ARHGTLRG QFRGG TMHGPKPRSHAI
Sbjct: 120 QLAKRQQGTHSTKTISEVSGTGRKPYPQKGTGKARHGTLRGAQFRGGATMHGPKPRSHAI 179
Query: 197 KLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGC 256
KL KKVRRLGLKIALSAR AEGKLL+FEDLEVPSHKTK IV Y QM+++KKVLL DGG
Sbjct: 180 KLQKKVRRLGLKIALSARTAEGKLLIFEDLEVPSHKTKNIVQYIRQMDDSKKVLLVDGGD 239
Query: 257 IHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNKIVDRMHTPINR 310
I +KLKLATQNLHYVNVLPS+GLNVYSILQHDTLVM+R A+N+IV+RMHTPINR
Sbjct: 240 IDKKLKLATQNLHYVNVLPSIGLNVYSILQHDTLVMTRAAINRIVERMHTPINR 293
>gi|218186003|gb|EEC68430.1| hypothetical protein OsI_36619 [Oryza sativa Indica Group]
Length = 273
Score = 369 bits (946), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 188/247 (76%), Positives = 207/247 (83%), Gaps = 14/247 (5%)
Query: 64 TTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLAGDVFDV 123
+T+L P ++E P +LL KTV TPD ++DLV VTNF NEDKGFMVL GDVFDV
Sbjct: 41 STLLAP-ANEVLIPQELLSSKTVWTPDRQ---YEDLVARVTNFHNEDKGFMVLDGDVFDV 96
Query: 124 PIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGG 183
PIRKDI+HRV GTHSTKTISEVSGTG+KP+ QKGTGRARHGTLRGPQFRGG
Sbjct: 97 PIRKDIVHRV----------GTHSTKTISEVSGTGRKPYNQKGTGRARHGTLRGPQFRGG 146
Query: 184 TTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQM 243
TMHGPKPRSHAIKL KKVRRLGLKIALSAR AEGKLLVF+DLEVPSHKTK IV Y QM
Sbjct: 147 ATMHGPKPRSHAIKLQKKVRRLGLKIALSARTAEGKLLVFDDLEVPSHKTKNIVQYIGQM 206
Query: 244 ENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNKIVDR 303
E TKKVLL DGG I +KLKLATQNLHYVNVLPS+GLNVYSILQHDTLVM+R+A+N+IV+R
Sbjct: 207 EGTKKVLLVDGGDIDKKLKLATQNLHYVNVLPSIGLNVYSILQHDTLVMTRNAINRIVER 266
Query: 304 MHTPINR 310
MHTPI+R
Sbjct: 267 MHTPISR 273
>gi|294463048|gb|ADE77062.1| unknown [Picea sitchensis]
Length = 323
Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 181/271 (66%), Positives = 215/271 (79%), Gaps = 6/271 (2%)
Query: 40 VACSGDNLFPLKSGLSFLASRKFSTTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDL 99
A SG+ ++ S +++R + + TP + PS+LL + G +DL
Sbjct: 59 AATSGNGMW------SLISARGLCSFVPTPQTDLVISPSELLAAQAAYAAQRVQGKFEDL 112
Query: 100 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
+ VTN NEDKG +VLAGDVFDVPIRKDIIHRVVRWQLAKR+QGTHSTKTISEVSGTG+
Sbjct: 113 TLRVTNMRNEDKGMIVLAGDVFDVPIRKDIIHRVVRWQLAKRRQGTHSTKTISEVSGTGR 172
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
KPW QKGTG+ARHGTLRGPQFR G TMHGPKPRSHAIKL KKVRRLGLKIALSARAAEGK
Sbjct: 173 KPWPQKGTGKARHGTLRGPQFRHGATMHGPKPRSHAIKLQKKVRRLGLKIALSARAAEGK 232
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGL 279
L+VF+ ++ +HKTK + Y +Q+EN KK+LL +GG +++KL LATQNLHY NVLPS+GL
Sbjct: 233 LMVFDTFDLTTHKTKEVAKYVSQLENCKKILLVEGGPVNKKLGLATQNLHYANVLPSIGL 292
Query: 280 NVYSILQHDTLVMSRDAVNKIVDRMHTPINR 310
NVYSILQHDTLVM+ DAVN+IV+RMHTPINR
Sbjct: 293 NVYSILQHDTLVMTADAVNRIVERMHTPINR 323
>gi|357466353|ref|XP_003603461.1| 50S ribosomal protein L4 [Medicago truncatula]
gi|355492509|gb|AES73712.1| 50S ribosomal protein L4 [Medicago truncatula]
Length = 366
Score = 362 bits (930), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 186/279 (66%), Positives = 218/279 (78%), Gaps = 19/279 (6%)
Query: 1 MALTVSRRLLRRFGSFSAFGR--YESPSLTSRSIRSPPDLYVACSGDNLFPLKSGLSFLA 58
MA +S+RLLR + S + GR + SPS LY G+ L + L+
Sbjct: 48 MASFISKRLLRSYQSLHSLGRRCFNSPS--------AAGLY----GERLISAQRILTGSI 95
Query: 59 SRKFSTTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLAG 118
+++FST+ + E AFPSDLL KK + T + IGL QDL+IPVTNF NEDKGFMVLAG
Sbjct: 96 TQRFSTS-----TDEAAFPSDLLSKKPLATSERDIGLCQDLLIPVTNFHNEDKGFMVLAG 150
Query: 119 DVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGP 178
DVFD+PIRKDI+HRVV WQ AKRQQGTHSTKTISEVSGTG+KPW QKGTGRARHG+LRGP
Sbjct: 151 DVFDMPIRKDIVHRVVLWQRAKRQQGTHSTKTISEVSGTGRKPWNQKGTGRARHGSLRGP 210
Query: 179 QFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVN 238
QFRGG HGPKPRSHA KLNKKVRRLGLKIALSARAAEGKLLVFEDLEVP+HKTK +N
Sbjct: 211 QFRGGEAKHGPKPRSHAFKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPTHKTKNFLN 270
Query: 239 YYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++NQ+E+TKK+L+ D G ++EKLKLATQNLHYVN+LPS+
Sbjct: 271 FFNQLEDTKKLLIVDDGPVNEKLKLATQNLHYVNLLPSI 309
>gi|218186871|gb|EEC69298.1| hypothetical protein OsI_38360 [Oryza sativa Indica Group]
Length = 197
Score = 360 bits (923), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 172/197 (87%), Positives = 185/197 (93%)
Query: 114 MVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHG 173
MVL GDVFDVPIRKDI+HRVVRWQLAKRQQGTHSTK ISEVSGTG+KP++QKGTGRARHG
Sbjct: 1 MVLDGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKIISEVSGTGRKPYKQKGTGRARHG 60
Query: 174 TLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKT 233
TLRGPQFRGG TMHGPKPRSH IKL KKVRRLGLKIALSAR AEGKLLVFEDLEVPSHKT
Sbjct: 61 TLRGPQFRGGATMHGPKPRSHTIKLQKKVRRLGLKIALSARTAEGKLLVFEDLEVPSHKT 120
Query: 234 KFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMS 293
K +V+Y +QME+TKKVLL DGG I +KLKLATQNLHYVNVLPS+GLNVYSILQHDTLVM+
Sbjct: 121 KNVVSYISQMEDTKKVLLVDGGDIDKKLKLATQNLHYVNVLPSIGLNVYSILQHDTLVMT 180
Query: 294 RDAVNKIVDRMHTPINR 310
RDAVN+IV+RMH PINR
Sbjct: 181 RDAVNRIVERMHIPINR 197
>gi|223944103|gb|ACN26135.1| unknown [Zea mays]
Length = 197
Score = 352 bits (904), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 169/197 (85%), Positives = 183/197 (92%)
Query: 114 MVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHG 173
MVL GDVFDVPIRKDI+HRVVRWQLAKRQQGTHSTKTISEVSGTG+KP+ QKGTG+ARHG
Sbjct: 1 MVLDGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPYPQKGTGKARHG 60
Query: 174 TLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKT 233
TLRG QFRGG TMHGPKPRSHAIKL KKVRRLGLKIALSAR AEGKLL+FEDLEVPSHKT
Sbjct: 61 TLRGAQFRGGATMHGPKPRSHAIKLQKKVRRLGLKIALSARTAEGKLLIFEDLEVPSHKT 120
Query: 234 KFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMS 293
K IV Y QM+++KKVLL DGG I +KLKLATQNLHYVNVLPS+GLNVYSILQHDTLVM+
Sbjct: 121 KNIVQYIRQMDDSKKVLLVDGGDIDKKLKLATQNLHYVNVLPSIGLNVYSILQHDTLVMT 180
Query: 294 RDAVNKIVDRMHTPINR 310
R A+N+IV+RMHTPINR
Sbjct: 181 RAAINRIVERMHTPINR 197
>gi|255635335|gb|ACU18021.1| unknown [Glycine max]
Length = 224
Score = 303 bits (777), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 157/226 (69%), Positives = 177/226 (78%), Gaps = 5/226 (2%)
Query: 1 MALTVSRRLLR-RFGSFSAFGR--YESPSLTSRSIRSPPDLYVACSGDNLFPLKSGLSFL 57
MA +S+R+LR GS + GR ++SP S I P D+ SG+ +F L
Sbjct: 1 MAALISKRILRCSSGSLHSLGRCYFDSPGFAS--IYKPRDVCGGLSGERMFSADRSLVGS 58
Query: 58 ASRKFSTTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLA 117
R+FST+ILTP + AFPSDLL KK + T + TIGL QDL+IPVTNF NEDKG+MVL
Sbjct: 59 MVRQFSTSILTPGDDDSAFPSDLLSKKILATSERTIGLCQDLLIPVTNFHNEDKGYMVLP 118
Query: 118 GDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRG 177
GDVFD+PIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG+KPW QKGTGRARHG+LRG
Sbjct: 119 GDVFDLPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWNQKGTGRARHGSLRG 178
Query: 178 PQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVF 223
PQFRGG TMHGPKPRSHA K+NKKVRRLGLKIALSARAAEGKLL F
Sbjct: 179 PQFRGGATMHGPKPRSHAFKVNKKVRRLGLKIALSARAAEGKLLSF 224
>gi|168041144|ref|XP_001773052.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675599|gb|EDQ62092.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 269
Score = 292 bits (747), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 144/218 (66%), Positives = 171/218 (78%), Gaps = 1/218 (0%)
Query: 94 GLHQDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISE 153
G +D+ + VTNF +EDKG LAGDVFDVPIR D++HRVVRWQLAKR+QGT STK I E
Sbjct: 52 GQLKDVEVKVTNFQSEDKGLATLAGDVFDVPIRPDVVHRVVRWQLAKRRQGTASTKGIHE 111
Query: 154 VSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSA 213
VSGTG+KP QKG+GRARHG+LRGPQFRGG T HGPKPRSH I L K+VRRLGLK+ALS+
Sbjct: 112 VSGTGRKPGPQKGSGRARHGSLRGPQFRGGATQHGPKPRSHEIGLQKQVRRLGLKVALSS 171
Query: 214 RAAEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGG-CIHEKLKLATQNLHYVN 272
R AEGKL VF+ +E P+ KT+ + +E KKVL+ D ++E L AT NLHYVN
Sbjct: 172 RVAEGKLKVFDSVEPPTLKTREMERLIADIEGCKKVLIVDDAETVNESLCRATGNLHYVN 231
Query: 273 VLPSVGLNVYSILQHDTLVMSRDAVNKIVDRMHTPINR 310
VLP+ GLNVYSILQHDTLVMS A+ +I +R+HTPINR
Sbjct: 232 VLPAKGLNVYSILQHDTLVMSVGAIRRIEERLHTPINR 269
>gi|77555479|gb|ABA98275.1| ribosomal protein L4/L1 family protein [Oryza sativa Japonica
Group]
Length = 288
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 156/250 (62%), Positives = 185/250 (74%), Gaps = 17/250 (6%)
Query: 64 TTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKG---FMVLAGDV 120
+T++TP S E P +LL +TV TP+ IG ++DLV +TNF + +MV+
Sbjct: 53 STLVTP-SDEVLVPPELLSSRTVGTPERKIGQYEDLVARITNFTMRIRATWCWMVMY--- 108
Query: 121 FDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQF 180
++ + R + G + + KP++QKGTGRARHGTLRGPQF
Sbjct: 109 --------LMFQSGRTLFIELYVGNLLNG--NSILCIYIKPYKQKGTGRARHGTLRGPQF 158
Query: 181 RGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYY 240
RGG TMHGPKPRSHAIKL KKVRRLGLKIALSAR AEGKLLVFEDLEVPSHKTK +V+Y
Sbjct: 159 RGGATMHGPKPRSHAIKLQKKVRRLGLKIALSARTAEGKLLVFEDLEVPSHKTKNVVSYI 218
Query: 241 NQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNKI 300
+QME+TKKVLL DGG I +KLKLATQNLHYVNVLPS+GLNVYSILQHDTLVM+RDAVN+I
Sbjct: 219 SQMEDTKKVLLVDGGDIDKKLKLATQNLHYVNVLPSIGLNVYSILQHDTLVMTRDAVNRI 278
Query: 301 VDRMHTPINR 310
V+RMHTPINR
Sbjct: 279 VERMHTPINR 288
>gi|222617092|gb|EEE53224.1| hypothetical protein OsJ_36122 [Oryza sativa Japonica Group]
Length = 227
Score = 273 bits (698), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 131/151 (86%), Positives = 143/151 (94%)
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
+P++QKGTGRARHGTLRGPQFRGG TMHGPKPRSHAIKL KKVRRLGLKIALSAR AEGK
Sbjct: 77 QPYKQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAIKLQKKVRRLGLKIALSARTAEGK 136
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGL 279
LLVFEDLEVPSHKTK +V+Y +QME+TKKVLL DGG I +KLKLATQNLHYVNVLPS+GL
Sbjct: 137 LLVFEDLEVPSHKTKNVVSYISQMEDTKKVLLVDGGDIDKKLKLATQNLHYVNVLPSIGL 196
Query: 280 NVYSILQHDTLVMSRDAVNKIVDRMHTPINR 310
NVYSILQHDTLVM+RDAVN+IV+RMHTPINR
Sbjct: 197 NVYSILQHDTLVMTRDAVNRIVERMHTPINR 227
>gi|302772867|ref|XP_002969851.1| hypothetical protein SELMODRAFT_227946 [Selaginella moellendorffii]
gi|300162362|gb|EFJ28975.1| hypothetical protein SELMODRAFT_227946 [Selaginella moellendorffii]
Length = 215
Score = 260 bits (665), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 128/215 (59%), Positives = 170/215 (79%), Gaps = 2/215 (0%)
Query: 97 QDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSG 156
+D+V+PVTN+ EDKG + +AGD+FDVPIRKDI+H VV+WQ AKR++GTHSTKT EV+G
Sbjct: 2 RDVVLPVTNWEQEDKGTVTIAGDIFDVPIRKDIVHHVVKWQRAKRRKGTHSTKTRGEVAG 61
Query: 157 TGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAA 216
+ +K +QKGTG+ARHG+ R PQFRGG HGPKPRS+ KLNKKVRRLGLKIALSAR A
Sbjct: 62 STRKIHKQKGTGKARHGSRRAPQFRGGGVAHGPKPRSYEYKLNKKVRRLGLKIALSARVA 121
Query: 217 EGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDG-GCIHEKLKLATQNLHYVNVLP 275
E KL++F+++++P+HKT+ ++ + ++VL+ DG + ++ LA +N+ VNV+P
Sbjct: 122 ERKLMLFDNVDLPTHKTRQLMKLVPNL-GCRRVLIVDGVEKMGREITLACRNVKEVNVIP 180
Query: 276 SVGLNVYSILQHDTLVMSRDAVNKIVDRMHTPINR 310
+ GLNVYSIL HDTLVMS AV +I DR+HTPINR
Sbjct: 181 AKGLNVYSILLHDTLVMSVAAVREIEDRLHTPINR 215
>gi|302807160|ref|XP_002985293.1| hypothetical protein SELMODRAFT_181558 [Selaginella moellendorffii]
gi|300147121|gb|EFJ13787.1| hypothetical protein SELMODRAFT_181558 [Selaginella moellendorffii]
Length = 215
Score = 260 bits (664), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 128/215 (59%), Positives = 170/215 (79%), Gaps = 2/215 (0%)
Query: 97 QDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSG 156
+D+V+PVTN+ EDKG + +AGD+FDVPIRKDI+H VV+WQ AKR++GTHSTKT EV+G
Sbjct: 2 RDVVLPVTNWEQEDKGTVTIAGDIFDVPIRKDIVHHVVKWQRAKRRKGTHSTKTRGEVAG 61
Query: 157 TGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAA 216
+ +K +QKGTG+ARHG+ R PQFRGG HGPKPRS+ KLNKKVRRLGLKIALSAR A
Sbjct: 62 STRKINKQKGTGKARHGSRRAPQFRGGGVAHGPKPRSYEYKLNKKVRRLGLKIALSARVA 121
Query: 217 EGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDG-GCIHEKLKLATQNLHYVNVLP 275
E KL++F+++++P+HKT+ ++ + ++VL+ DG + ++ LA +N+ VNV+P
Sbjct: 122 ERKLMLFDNVDLPTHKTRQLMKLVPNL-GCRRVLIVDGVEKMGREITLACRNVKEVNVIP 180
Query: 276 SVGLNVYSILQHDTLVMSRDAVNKIVDRMHTPINR 310
+ GLNVYSIL HDTLVMS AV +I DR+HTPINR
Sbjct: 181 AKGLNVYSILLHDTLVMSVAAVREIEDRLHTPINR 215
>gi|297613186|ref|NP_001066789.2| Os12g0488600 [Oryza sativa Japonica Group]
gi|255670313|dbj|BAF29808.2| Os12g0488600 [Oryza sativa Japonica Group]
Length = 346
Score = 247 bits (630), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 139/230 (60%), Positives = 165/230 (71%), Gaps = 17/230 (7%)
Query: 64 TTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKG---FMVLAGDV 120
+T++TP S E P +LL +TV TP+ IG ++DLV +TNF + +MV+
Sbjct: 88 STLVTP-SDEVLVPPELLSSRTVGTPERKIGQYEDLVARITNFTMRIRATWCWMVMY--- 143
Query: 121 FDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQF 180
++ + R + G + + KP++QKGTGRARHGTLRGPQF
Sbjct: 144 --------LMFQSGRTLFIELYVGNLLNG--NSILCIYIKPYKQKGTGRARHGTLRGPQF 193
Query: 181 RGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYY 240
RGG TMHGPKPRSHAIKL KKVRRLGLKIALSAR AEGKLLVFEDLEVPSHKTK +V+Y
Sbjct: 194 RGGATMHGPKPRSHAIKLQKKVRRLGLKIALSARTAEGKLLVFEDLEVPSHKTKNVVSYI 253
Query: 241 NQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTL 290
+QME+TKKVLL DGG I +KLKLATQNLHYVNVLPS+GLNVYSILQHDTL
Sbjct: 254 SQMEDTKKVLLVDGGDIDKKLKLATQNLHYVNVLPSIGLNVYSILQHDTL 303
>gi|307110022|gb|EFN58259.1| hypothetical protein CHLNCDRAFT_142203 [Chlorella variabilis]
Length = 322
Score = 229 bits (585), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 118/239 (49%), Positives = 159/239 (66%), Gaps = 7/239 (2%)
Query: 78 SDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQ 137
DLLL L GL++DL++P+ + + G + L GD+FDVPIR+DI+HRVVRWQ
Sbjct: 78 EDLLLPAIPLEQQERQGLYRDLIVPLYDLSRQPVGTVTLGGDIFDVPIRRDILHRVVRWQ 137
Query: 138 LAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIK 197
LAKRQQGTH TKT SEV G G+KP QKG+GR+R GT+R PQ+RGG HGP PRSH
Sbjct: 138 LAKRQQGTHKTKTRSEVRGGGRKPRPQKGSGRSRQGTIRAPQWRGGGVAHGPVPRSHEHD 197
Query: 198 LNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQM---ENTKKVLLCDG 254
L K+VRRLGL+ ALSA+A E +LLV + L+ KTK +++ + + + VLLCD
Sbjct: 198 LPKRVRRLGLQCALSAKAWERRLLVVDSLQPAEPKTKVMLDNVDALLADAPRRSVLLCDS 257
Query: 255 GCIHEK----LKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNKIVDRMHTPIN 309
+ E L+ NL +V+ +P GLNVYSILQ D LV+++ AV+ +++R+ PI
Sbjct: 258 SKLGEDGGEVLRRTAANLPWVDCIPQQGLNVYSILQRDYLVLTKRAVDLLMERLRRPIK 316
>gi|392383010|ref|YP_005032207.1| 50S ribosomal subunit protein L4 [Azospirillum brasilense Sp245]
gi|356877975|emb|CCC98837.1| 50S ribosomal subunit protein L4 [Azospirillum brasilense Sp245]
Length = 208
Score = 209 bits (533), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 105/202 (51%), Positives = 138/202 (68%), Gaps = 1/202 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+ N NE G + LA ++F +P R DI+ R+V WQLAKR+ GTH TKTISE+SGTGKKP+
Sbjct: 7 IKNLNNETVGEIELADEIFGLPSRTDILARMVNWQLAKRRAGTHKTKTISEISGTGKKPY 66
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQKGTGRAR G++R QFRGG T+ GP RSH L KKVR+L LK ALS +AAEGKLLV
Sbjct: 67 RQKGTGRARQGSMRSAQFRGGATIFGPVVRSHEHDLTKKVRKLALKTALSTKAAEGKLLV 126
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
+ SHKTK + + T L+ DG ++E A++N+ ++VLP G NVY
Sbjct: 127 LDAASAESHKTKELAVRLASLGLT-SALIIDGANLNENFARASRNIPLIDVLPEQGANVY 185
Query: 283 SILQHDTLVMSRDAVNKIVDRM 304
IL+ DTLV++R+AV ++ R+
Sbjct: 186 DILRRDTLVLTRNAVEQLEARL 207
>gi|427429419|ref|ZP_18919454.1| LSU ribosomal protein L4p (L1e) [Caenispirillum salinarum AK4]
gi|425880612|gb|EKV29308.1| LSU ribosomal protein L4p (L1e) [Caenispirillum salinarum AK4]
Length = 206
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 105/204 (51%), Positives = 139/204 (68%), Gaps = 1/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N+ G + LA D+F + +R D++HRVVRWQLAKRQ GTH TK ISE+SGT KK
Sbjct: 3 VDVITLDNKSAGSVELAEDIFGLDVRADLLHRVVRWQLAKRQAGTHKTKGISEISGTTKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQKGTG AR G++R PQFRGG T+ GP RSHA L KKVR+LGLK ALSA+A +GKL
Sbjct: 63 PFRQKGTGHARQGSMRSPQFRGGATIFGPVVRSHAHDLPKKVRKLGLKTALSAKAKDGKL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + S KTK +V + L+ DG +++ A +N+ V+VLP G N
Sbjct: 123 VVLDTATSESGKTKDLVKQLAAL-GWSSALIIDGEAVNDGFARAARNIVGVDVLPQQGAN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL+ DTLV+++DAV K+ +R+
Sbjct: 182 VYDILRRDTLVLTKDAVAKLEERL 205
>gi|209964041|ref|YP_002296956.1| 50S ribosomal protein L4 [Rhodospirillum centenum SW]
gi|226730714|sp|B6IRQ7.1|RL4_RHOCS RecName: Full=50S ribosomal protein L4
gi|209957507|gb|ACI98143.1| ribosomal protein L4 [Rhodospirillum centenum SW]
Length = 206
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 104/202 (51%), Positives = 135/202 (66%), Gaps = 1/202 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V N NE G + LA +VF +P R+DI+ R+V WQLAKR+QGTH TK ISE++GT KKPW
Sbjct: 5 VKNLNNETVGEIELADEVFGLPTRQDILTRMVLWQLAKRRQGTHKTKGISEIAGTTKKPW 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQKGTGRAR G+ R PQFRGG + GP RSH L KKVR+L LK ALS +AAEGKL V
Sbjct: 65 RQKGTGRARQGSTRSPQFRGGARIFGPVVRSHEHDLTKKVRKLALKTALSTKAAEGKLFV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
E + +HKTK + + T L+ DG + E A +N+ +++VLP G NVY
Sbjct: 125 LEAAKADTHKTKALAAQLKTLGLT-SALIIDGANLDETFVRAARNIPHLDVLPEQGANVY 183
Query: 283 SILQHDTLVMSRDAVNKIVDRM 304
IL+ D LV++R+AV ++ R+
Sbjct: 184 DILRRDVLVLTRNAVEQLEARL 205
>gi|288957423|ref|YP_003447764.1| 50S ribosomal protein L4 [Azospirillum sp. B510]
gi|288909731|dbj|BAI71220.1| large subunit ribosomal protein L4 [Azospirillum sp. B510]
Length = 206
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 102/202 (50%), Positives = 136/202 (67%), Gaps = 1/202 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+ N NE G + L+ VF +P R D++ R+V WQLAKR+ G H TK ISE+SGT KKP+
Sbjct: 5 IKNLNNEAVGEIELSDAVFGLPARTDLLARMVNWQLAKRRSGNHKTKGISEISGTTKKPY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
QKGTGRAR G++R PQFRGG T+ GP RSHA +L KKVR+L LK ALSA+AAEGKL+V
Sbjct: 65 GQKGTGRARQGSIRSPQFRGGATIFGPVVRSHAHELTKKVRKLALKTALSAKAAEGKLIV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
E +HKTK + + T L+ DG + E A++N+ ++VLP G NVY
Sbjct: 125 LEAAAAETHKTKELAARLATLGLT-SALIIDGANLDENFAKASRNIPLIDVLPEQGANVY 183
Query: 283 SILQHDTLVMSRDAVNKIVDRM 304
IL+ DTLV++R+AV ++ R+
Sbjct: 184 DILRRDTLVLTRNAVEQLEARL 205
>gi|374291053|ref|YP_005038088.1| 50S ribosomal protein L4 [Azospirillum lipoferum 4B]
gi|357422992|emb|CBS85835.1| 50S ribosomal subunit protein L4 [Azospirillum lipoferum 4B]
Length = 209
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 102/202 (50%), Positives = 135/202 (66%), Gaps = 1/202 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+ N NE G + L+ VF +P R D++ R+V WQLAKR+ G H TK ISE+SGT KKP+
Sbjct: 8 IKNLNNEAVGEIELSDAVFGLPTRTDLLARMVNWQLAKRRSGNHKTKGISEISGTTKKPY 67
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
QKGTGRAR G++R PQFRGG T+ GP RSHA L KKVR+L LK ALSA+AAEGKL+V
Sbjct: 68 SQKGTGRARQGSIRSPQFRGGATIFGPVVRSHAHDLTKKVRKLALKTALSAKAAEGKLIV 127
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
E +HKTK + + T L+ DG + E A++N+ ++VLP G NVY
Sbjct: 128 LEAAAAETHKTKELAARLATLGLT-SALIIDGSNLDENFAKASRNIPLIDVLPEQGANVY 186
Query: 283 SILQHDTLVMSRDAVNKIVDRM 304
IL+ DTLV++R+AV ++ R+
Sbjct: 187 DILRRDTLVLTRNAVEQLEARL 208
>gi|381165702|ref|ZP_09874929.1| 50S ribosomal subunit protein L4 [Phaeospirillum molischianum DSM
120]
gi|380685192|emb|CCG39741.1| 50S ribosomal subunit protein L4 [Phaeospirillum molischianum DSM
120]
Length = 206
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 102/202 (50%), Positives = 135/202 (66%), Gaps = 1/202 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V + N+ G + LA VF +P+R DI+ R+V WQLAKR+ G H TK I E+SGT KKP+
Sbjct: 5 VISLENQTVGEIELAETVFGLPVRTDILARMVNWQLAKRRSGNHKTKGIKEISGTTKKPF 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
QKG GRAR G+LR PQFRGG T+ GP RSHA L KKVR+L LK ALSA+A +GKL V
Sbjct: 65 AQKGGGRARQGSLRSPQFRGGATIFGPVVRSHAHDLPKKVRKLALKTALSAKAGDGKLFV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
+ V + KT+ + N + VL+ DG + + LA++N+ YV+VLP G NVY
Sbjct: 125 LDAANVATPKTRELAARLNAL-GWSSVLVIDGAAVDDNFALASRNIPYVDVLPQAGANVY 183
Query: 283 SILQHDTLVMSRDAVNKIVDRM 304
IL+HDTLV+++DAV + R+
Sbjct: 184 DILRHDTLVLTKDAVEALEARL 205
>gi|83312228|ref|YP_422492.1| 50S ribosomal protein L4 [Magnetospirillum magneticum AMB-1]
gi|109893601|sp|Q2W2J2.1|RL4_MAGMM RecName: Full=50S ribosomal protein L4
gi|82947069|dbj|BAE51933.1| Ribosomal protein L4 [Magnetospirillum magneticum AMB-1]
Length = 206
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 103/202 (50%), Positives = 135/202 (66%), Gaps = 1/202 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V + N+ G + LA ++F VP+R DI+ R V WQLAKRQ G H TKTISE+SGT KKP+
Sbjct: 5 VISLDNQTVGEIELADEIFGVPVRGDILFRAVNWQLAKRQSGNHKTKTISEISGTTKKPF 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
QKG GRAR G+LR QFRGG+T+ GP RSHA L KKVR+L LK ALSA+ A+GKL+V
Sbjct: 65 AQKGGGRARQGSLRSAQFRGGSTIFGPVVRSHAHDLPKKVRKLALKTALSAKVADGKLIV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
+ S KTK + ++ VL DG + LA++N+ YV+VLP+ G NVY
Sbjct: 125 VDAASAGSPKTKDLAARLGKL-GLSSVLFIDGAAVDGNFALASRNIPYVDVLPTQGANVY 183
Query: 283 SILQHDTLVMSRDAVNKIVDRM 304
IL+ DTLV+++DAV + R+
Sbjct: 184 DILRRDTLVLTKDAVAALEARL 205
>gi|83594019|ref|YP_427771.1| 50S ribosomal protein L4 [Rhodospirillum rubrum ATCC 11170]
gi|386350771|ref|YP_006049019.1| 50S ribosomal protein L4 [Rhodospirillum rubrum F11]
gi|109893631|sp|Q2RQW1.1|RL4_RHORT RecName: Full=50S ribosomal protein L4
gi|83576933|gb|ABC23484.1| LSU ribosomal protein L4P [Rhodospirillum rubrum ATCC 11170]
gi|346719207|gb|AEO49222.1| 50S ribosomal protein L4 [Rhodospirillum rubrum F11]
Length = 206
Score = 200 bits (509), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 102/203 (50%), Positives = 139/203 (68%), Gaps = 1/203 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V +D G + L+ VF +P+R D++HR+VRWQLA+RQ GTH TK ISE+SGT KP+
Sbjct: 5 VKTLDGKDAGSIELSDSVFGLPVRTDLLHRMVRWQLARRQAGTHKTKGISEISGTTAKPF 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
+QKGTG AR G+ R PQFRGG T+ GP RSHA LNKKVR+LGLK ALSA+A G+L+V
Sbjct: 65 KQKGTGHARQGSKRSPQFRGGATIFGPVVRSHAHDLNKKVRKLGLKTALSAKAQAGQLIV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
+ S KTK ++ + +KVL DG ++EK LA +N+ ++VLP G NVY
Sbjct: 125 LDQAISESGKTKDLLAQLKVL-GLEKVLFIDGPEVNEKFALAARNIIGLDVLPQQGANVY 183
Query: 283 SILQHDTLVMSRDAVNKIVDRMH 305
IL+ DTLV++++AV + +R+
Sbjct: 184 DILRRDTLVLTKEAVKHLEERLQ 206
>gi|452965939|gb|EME70956.1| 50S ribosomal protein L4 [Magnetospirillum sp. SO-1]
Length = 206
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 102/202 (50%), Positives = 134/202 (66%), Gaps = 1/202 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V + N+ G + LA ++F +P+R DI+ R V WQLAKRQ G H TKTISE+SGT KKP+
Sbjct: 5 VISLDNQTVGEIELADEIFGLPVRGDILFRAVNWQLAKRQSGNHKTKTISEISGTTKKPF 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
QKG GRAR G+LR QFRGG T+ GP RSHA L KKVR+L LK ALSA+AA+GKL+V
Sbjct: 65 AQKGGGRARQGSLRSAQFRGGATIFGPVVRSHAHDLPKKVRKLALKTALSAKAADGKLIV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
+ S KTK + ++ VL DG + LA++N+ YV+VLP G NVY
Sbjct: 125 VDSAAAGSPKTKDLAARLGKL-GLSSVLFIDGSAVDGNFALASRNIPYVDVLPQQGANVY 183
Query: 283 SILQHDTLVMSRDAVNKIVDRM 304
IL+ +TLV+++DAV + R+
Sbjct: 184 DILRRETLVLTKDAVAALEARL 205
>gi|406989325|gb|EKE09117.1| hypothetical protein ACD_16C00213G0040 [uncultured bacterium]
Length = 206
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 100/204 (49%), Positives = 137/204 (67%), Gaps = 5/204 (2%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V NF N+ G + L+ ++F P+R+DI+ R+V WQLAKR+ G H+TK IS++SGT KKPW
Sbjct: 5 VRNFDNKKVGEIKLSPEIFSAPLRQDILARMVHWQLAKRRSGNHATKGISQISGTTKKPW 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQKGTGRAR G+LR PQFRGG + GP RSH+ L KKVR+L LK ALS++AA G LLV
Sbjct: 65 RQKGTGRARQGSLRSPQFRGGAVIFGPVTRSHSYSLPKKVRQLALKTALSSKAASGALLV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMEN--TKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
EDL+ KTK + ++EN + L+ DG ++E N V+VLP G+N
Sbjct: 125 VEDLKAGVKKTK---DLAKKLENLGLRSALIIDGFEVNEDFARTAANFPEVDVLPQQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL+H+ LV+++ A+ + R+
Sbjct: 182 VYDILRHEHLVLTKAAIESLESRL 205
>gi|389878488|ref|YP_006372053.1| 50S ribosomal protein L4P [Tistrella mobilis KA081020-065]
gi|388529272|gb|AFK54469.1| 50S ribosomal protein L4P [Tistrella mobilis KA081020-065]
Length = 207
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 103/204 (50%), Positives = 133/204 (65%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V NED G + LA +VF +P R DI+HR+VR+QLAKR+ GTH KTISE++G+ K
Sbjct: 3 VKVITLDNEDAGTIALADEVFGLPARVDILHRMVRYQLAKRRAGTHKVKTISEIAGSTAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
+RQKGTGRARHG R FRGG T+HGP RSHA L KKVRRL LK ALS +A GKL
Sbjct: 63 IYRQKGTGRARHGAKRANIFRGGATVHGPVVRSHAHDLPKKVRRLALKTALSVKAQGGKL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V ++L+ KTK +V + L G + + +LA +NL ++VLPS G N
Sbjct: 123 VVVDELKADDAKTKALVARLEKAGLGSSTLFIGGTEVDQGFRLAARNLIGIDVLPSQGAN 182
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL+ DTLV+SR AV + R+
Sbjct: 183 VYDILRRDTLVLSRAAVESLEARL 206
>gi|23014087|ref|ZP_00053924.1| COG0088: Ribosomal protein L4 [Magnetospirillum magnetotacticum
MS-1]
Length = 206
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 101/202 (50%), Positives = 135/202 (66%), Gaps = 1/202 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V + N+ G + LA ++F +P+R DI+ R V WQLAKRQ G H TKTISE+SGT KKP+
Sbjct: 5 VISLDNQTVGEIELADEIFGLPVRGDILFRAVNWQLAKRQSGNHKTKTISEISGTTKKPF 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
QKG GRAR G+LR QFRGG+T+ GP RSHA L KKVR+L LK ALSA+ A+GKL+V
Sbjct: 65 AQKGGGRARQGSLRSAQFRGGSTIFGPVVRSHAHDLPKKVRKLALKTALSAKVADGKLIV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
++ S KTK + ++ VL DG + LA++N+ YV+VLP G NVY
Sbjct: 125 VDNATAGSPKTKDLAARLGKL-GLSSVLFIDGAAVDGNFALASRNIPYVDVLPQQGANVY 183
Query: 283 SILQHDTLVMSRDAVNKIVDRM 304
IL+ +TLV+++DAV + R+
Sbjct: 184 DILRRETLVLTKDAVAALEARL 205
>gi|384261633|ref|YP_005416819.1| 50S ribosomal protein L4 [Rhodospirillum photometricum DSM 122]
gi|378402733|emb|CCG07849.1| 50S ribosomal protein L4 [Rhodospirillum photometricum DSM 122]
Length = 206
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 100/203 (49%), Positives = 135/203 (66%), Gaps = 1/203 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V + G + L+ VF +P+R D++HR+VRWQLAKRQ GTH TK ISE+SGT KP+
Sbjct: 5 VKTLDGANAGSVELSEAVFGLPVRADLLHRLVRWQLAKRQAGTHKTKGISEISGTTAKPF 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
+QKGTG AR G+ R PQFRGG T+ GP RSHA L KKVR+LGLK ALSA+ A G++L+
Sbjct: 65 KQKGTGNARQGSKRSPQFRGGATIFGPVVRSHAHDLPKKVRKLGLKTALSAKVAAGEILI 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
+ + + KTK ++ + K L DG + EK LA +N+ ++VLPS G NVY
Sbjct: 125 LDQAKSENGKTKDLLAQVKAL-GLNKALFIDGPEVDEKFALAARNIVGIDVLPSQGANVY 183
Query: 283 SILQHDTLVMSRDAVNKIVDRMH 305
IL+ DTLV++ DAV + +R+
Sbjct: 184 DILRRDTLVLTLDAVKHLEERLQ 206
>gi|347758880|ref|YP_004866442.1| 50S ribosomal protein L4 [Micavibrio aeruginosavorus ARL-13]
gi|347591398|gb|AEP10440.1| 50S ribosomal protein L4 [Micavibrio aeruginosavorus ARL-13]
Length = 207
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 99/204 (48%), Positives = 131/204 (64%), Gaps = 1/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N N++ G + L +F + +R DI+HR+V +QL KR+ GTH TK I EVSGTGKK
Sbjct: 3 VAVKNLQNKEVGQIDLDDAIFGMSVRNDILHRMVHFQLNKRRAGTHDTKEIGEVSGTGKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P++QKGTG R G+LR PQ RGG + GP PRSHA L KKVR L LK ALSA+A GKL
Sbjct: 63 PFKQKGTGNGRQGSLRSPQMRGGAVIFGPTPRSHATDLPKKVRALALKTALSAKAKAGKL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + +HKTK + + T V++C G + AT NL ++VLPS G N
Sbjct: 123 IVLDQAVADTHKTKPMAEAMKALGLTSAVIVC-GDEVDANFSRATDNLPRIDVLPSQGAN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL+ DTLV+++DAV + R+
Sbjct: 182 VYDILRRDTLVLTKDAVANLTARL 205
>gi|145351929|ref|XP_001420312.1| Putative mitochondrial ribosomal protein L4 [Ostreococcus
lucimarinus CCE9901]
gi|144580546|gb|ABO98605.1| Putative mitochondrial ribosomal protein L4 [Ostreococcus
lucimarinus CCE9901]
Length = 224
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 100/217 (46%), Positives = 143/217 (65%), Gaps = 4/217 (1%)
Query: 94 GLHQDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISE 153
G +D V+PV +F E +G + L G +FD P+R D+ HRVVRWQ AK ++G H TK+ E
Sbjct: 12 GRGEDAVVPVYSFDGEARGSVELPGRIFDQPLRVDVAHRVVRWQRAKARKGLHKTKSRGE 71
Query: 154 VSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSA 213
V+G+ +K QKG+GRAR G L+ PQ RGG T HGP RSHA L KKVRR+GLK+ALSA
Sbjct: 72 VAGSTRKVRPQKGSGRARVGNLKAPQMRGGGTAHGPVVRSHAHALPKKVRRMGLKVALSA 131
Query: 214 RAAEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNV 273
+AAEGKL+V + KT+ + ++ T + L GG E ++++ +NL +V V
Sbjct: 132 KAAEGKLIVVDSFAGMEPKTRAMKATLERL--TGDLGLAAGG--DELVRMSARNLPHVEV 187
Query: 274 LPSVGLNVYSILQHDTLVMSRDAVNKIVDRMHTPINR 310
LP +G NVYSIL+ TL++++ + +++ R+ PI R
Sbjct: 188 LPQIGANVYSILRRRTLIVTKSGLEQLIARLDAPIKR 224
>gi|91205876|ref|YP_538231.1| 50S ribosomal protein L4 [Rickettsia bellii RML369-C]
gi|157826765|ref|YP_001495829.1| 50S ribosomal protein L4 [Rickettsia bellii OSU 85-389]
gi|109893633|sp|Q1RHM2.1|RL4_RICBR RecName: Full=50S ribosomal protein L4
gi|166199856|sp|A8GVB5.1|RL4_RICB8 RecName: Full=50S ribosomal protein L4
gi|91069420|gb|ABE05142.1| 50S ribosomal protein L4 [Rickettsia bellii RML369-C]
gi|157802069|gb|ABV78792.1| 50S ribosomal protein L4 [Rickettsia bellii OSU 85-389]
Length = 207
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 99/203 (48%), Positives = 136/203 (66%), Gaps = 2/203 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ N NE+ G + L D+F V IR DII +VV WQ AK GTH TKT+SEVSGT KKP
Sbjct: 5 ILNLANEEIGEISLNEDIFAVEFIRDDIIKQVVDWQRAKAMAGTHKTKTVSEVSGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG +HGP RSHA KL KKVR+LGL ALS + +EGKLL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVIHGPVVRSHATKLPKKVRKLGLIHALSEKFSEGKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNV 281
V + L++ + KT +VN N+ + K + DG + LA QN++ V+P +G NV
Sbjct: 125 VIDSLKLETPKTSNLVNILNKFQG-KSFFVIDGNEVDVNFSLAAQNIYNTVVVPQIGANV 183
Query: 282 YSILQHDTLVMSRDAVNKIVDRM 304
Y I++H+ +++S++AVN + +R+
Sbjct: 184 YDIIRHEYVLLSQEAVNVLEERL 206
>gi|163796918|ref|ZP_02190875.1| 50S ribosomal protein L2 [alpha proteobacterium BAL199]
gi|159177907|gb|EDP62456.1| 50S ribosomal protein L2 [alpha proteobacterium BAL199]
Length = 206
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 99/204 (48%), Positives = 134/204 (65%), Gaps = 1/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ VTN E G + L +F + R+DI+ RVV WQLAKR+ G H TK+ISE+SGT KK
Sbjct: 3 LEVTNLDAEKTGEIDLDDSIFGLDPRRDILARVVNWQLAKRRSGNHKTKSISEISGTTKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQKGTGRAR G++R QFRGG T+HGP RSHA L KKVR+LGLK ALSA+ G+L
Sbjct: 63 PFRQKGTGRARQGSIRATQFRGGQTVHGPVVRSHAHDLPKKVRKLGLKCALSAKLKSGQL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + KTK + + ++ + VL+ DG ++E A +N+ V+VLP G N
Sbjct: 123 IVLDAASTDEAKTKLLAAKFEKL-GWQSVLVIDGPELNEGFARAARNIPRVDVLPQQGAN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL+ +TLV++R AV + R+
Sbjct: 182 VYDILRRETLVLTRGAVEHLEARL 205
>gi|390450920|ref|ZP_10236504.1| 50S ribosomal protein L4 [Nitratireductor aquibiodomus RA22]
gi|389661682|gb|EIM73281.1| 50S ribosomal protein L4 [Nitratireductor aquibiodomus RA22]
Length = 206
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 98/204 (48%), Positives = 133/204 (65%), Gaps = 1/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I VT +D G + ++ ++F + R+DI+HRVVRWQLAK+QQGTH TK SE+S TG K
Sbjct: 3 IKVTTLAGKDAGKLKISDEIFGLDPREDILHRVVRWQLAKKQQGTHKTKGRSEISRTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
+RQKGTGRARH + R PQFRGG HGP R H+ L KKVR LGLK ALSA+A + L
Sbjct: 63 MYRQKGTGRARHSSARVPQFRGGGRAHGPVVRDHSHDLPKKVRALGLKHALSAKAKDSSL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
++ +DL + KTK +V+ + ++ LL G + K A QN+ ++VLP G+N
Sbjct: 123 IIIDDLALADGKTKSLVDSFAKL-GLSNALLIGGAEVDAGFKRAAQNIANIDVLPVQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL+ TLV+S+ AV + +R
Sbjct: 182 VYDILRRGTLVLSKAAVEALEERF 205
>gi|407776106|ref|ZP_11123395.1| 50S ribosomal protein L4 [Thalassospira profundimaris WP0211]
gi|407280822|gb|EKF06389.1| 50S ribosomal protein L4 [Thalassospira profundimaris WP0211]
Length = 206
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 94/193 (48%), Positives = 131/193 (67%), Gaps = 1/193 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + LA D+F + +R+D++HR+V WQLAKR+ GTH K SEVS T KK RQKG+G AR
Sbjct: 14 GKIDLAEDIFGLEVRRDVLHRMVNWQLAKRRAGTHKVKEKSEVSATTKKFVRQKGSGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG+ + QFRGG T+HGP+ R HA L KK R+L LK ALSA+A +GKL+V ++ E
Sbjct: 74 HGSRKAAQFRGGGTVHGPRVRDHAHDLTKKFRKLALKTALSAKAKDGKLIVLDNAEFSDA 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KTK +V +N++ K L+ DG ++E A +N+ V+VLP +G NVY IL+ DTLV
Sbjct: 134 KTKNLVAVFNKL-GWKSALIIDGAQVNEGFARAARNIPQVDVLPQIGANVYDILRRDTLV 192
Query: 292 MSRDAVNKIVDRM 304
+++ AV + R+
Sbjct: 193 LTKGAVEALEARL 205
>gi|144900885|emb|CAM77749.1| 50S ribosomal protein L4 [Magnetospirillum gryphiswaldense MSR-1]
Length = 205
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 99/202 (49%), Positives = 139/202 (68%), Gaps = 2/202 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V + N+ G + L+ DVF + +R D++HR+V +QL+KR+ GTH TK ISE+SGT KKP+
Sbjct: 5 VISLDNQSVGEIDLSDDVFGLAVRNDLLHRMVSYQLSKRRSGTHKTKGISEISGTTKKPF 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
QKG GRAR G+LR QFRGG T+ GP RSHA + KKVR+L LK+ALSA+AAEGKL+V
Sbjct: 65 NQKGGGRARQGSLRSAQFRGGATIFGPVVRSHAFDMPKKVRKLALKVALSAKAAEGKLVV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
++ + KTK + + + VL+ D G + LA++N+ +V+VLP VG NVY
Sbjct: 125 LDNATAAAPKTKALAAQFKAL-GWASVLVID-GAVDGNFALASRNIPHVDVLPEVGANVY 182
Query: 283 SILQHDTLVMSRDAVNKIVDRM 304
IL+ DTLV+++DAV + R+
Sbjct: 183 DILRRDTLVLTKDAVAALEARL 204
>gi|110634029|ref|YP_674237.1| 50S ribosomal protein L4 [Chelativorans sp. BNC1]
gi|123057912|sp|Q11HQ3.1|RL4_MESSB RecName: Full=50S ribosomal protein L4
gi|110285013|gb|ABG63072.1| LSU ribosomal protein L4P [Chelativorans sp. BNC1]
Length = 206
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 97/203 (47%), Positives = 131/203 (64%), Gaps = 1/203 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ VT +D G + ++ ++F + R+DI+HRVVRWQLAKRQQGTH K +E++ TG K
Sbjct: 3 LKVTTLAGKDAGKVEVSDEIFGLDPREDILHRVVRWQLAKRQQGTHKAKGRAEIARTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
+RQKGTGRARH + R PQFRGG HGP P SHA L KKVR LGLK ALSA+A L
Sbjct: 63 MYRQKGTGRARHSSARAPQFRGGGKAHGPVPHSHAHDLPKKVRALGLKHALSAKAKSANL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
++ +DL + KTK +V + ++ T L+ G I K A N+ ++VLP G+N
Sbjct: 123 IIVDDLAIKEAKTKALVESFAKLGVT-NALMIGGAEIDAGFKRAAANIPNIDVLPIQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDR 303
VY IL+ TLV+S+ AV + +R
Sbjct: 182 VYDILRRGTLVLSKAAVEALEER 204
>gi|407976941|ref|ZP_11157836.1| 50S ribosomal protein L4 [Nitratireductor indicus C115]
gi|407427668|gb|EKF40357.1| 50S ribosomal protein L4 [Nitratireductor indicus C115]
Length = 206
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 97/203 (47%), Positives = 130/203 (64%), Gaps = 1/203 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ VT D G + L+ ++F + R+DI+HRVVRWQLAK+Q GTH TK +E++ TG K
Sbjct: 3 LKVTTLAGADAGKLKLSDEIFGLDPREDILHRVVRWQLAKKQAGTHKTKGRAEIARTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP RSHA L KKVR LGLK ALSA+A L
Sbjct: 63 MYKQKGTGRARHSSARVPQFRGGGKAHGPVVRSHAHDLPKKVRALGLKHALSAKAKASNL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
++ +DL V KTK ++ + ++ LL G I K A QN+ ++VLP G+N
Sbjct: 123 IIVDDLAVSEAKTKILIENFAKL-GLNNALLIGGAEIDAGFKRAAQNIANIDVLPVQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDR 303
VY IL+ TLV+S+ AV + +R
Sbjct: 182 VYDILRRGTLVLSKAAVEALEER 204
>gi|407783108|ref|ZP_11130313.1| 50S ribosomal protein L4 [Oceanibaculum indicum P24]
gi|407203579|gb|EKE73565.1| 50S ribosomal protein L4 [Oceanibaculum indicum P24]
Length = 205
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 96/204 (47%), Positives = 132/204 (64%), Gaps = 2/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N D G + L VF V +R D++ RVV WQLAKR+ G H TK ISE++GT KK
Sbjct: 3 VTVKNLEAADVGAIELDEAVFGVDVRADLLSRVVHWQLAKRRSGNHKTKGISEIAGTTKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P++QKGTGRAR G+ R PQFRGG T+ GP R H L KKVR+LGLK AL+A+ + KL
Sbjct: 63 PYKQKGTGRARQGSTRSPQFRGGATIFGPVVRDHGYDLPKKVRKLGLKTALAAKLKDEKL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V +D ++ KTK + ++ T L+ D G + E LK A NL ++VLP +G N
Sbjct: 123 IVLDDAKLSEPKTKELKAQLEKLGIT-SALIVD-GAVDENLKKAASNLIGIDVLPQIGAN 180
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL+ DTLV++++A+ + R+
Sbjct: 181 VYDILRRDTLVLTKNAIEALEARL 204
>gi|407779021|ref|ZP_11126281.1| 50S ribosomal protein L4 [Nitratireductor pacificus pht-3B]
gi|407299305|gb|EKF18437.1| 50S ribosomal protein L4 [Nitratireductor pacificus pht-3B]
Length = 206
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 97/204 (47%), Positives = 131/204 (64%), Gaps = 1/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I VT D G + ++ ++F + R DI+HRVVRWQLAK+QQGTH +K +E+S TG K
Sbjct: 3 IKVTTLTGTDAGKLKISDEIFGLEPRDDILHRVVRWQLAKKQQGTHKSKGRAEISRTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP RSHA L KKVR LGLK ALSA+A +L
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPKKVRALGLKHALSAKAKGSQL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V ++L + KTK +V + ++ LL G + K A QN+ ++VLP G+N
Sbjct: 123 IVIDELALADGKTKALVESFAKL-GLNNALLIGGAEVDAGFKRAAQNIANIDVLPVQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL+ TLV+S+ AV + +R
Sbjct: 182 VYDILRRGTLVLSKAAVEALEERF 205
>gi|365854813|ref|ZP_09394878.1| 50S ribosomal protein L4 [Acetobacteraceae bacterium AT-5844]
gi|363719762|gb|EHM03061.1| 50S ribosomal protein L4 [Acetobacteraceae bacterium AT-5844]
Length = 222
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 99/204 (48%), Positives = 124/204 (60%), Gaps = 1/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+PV N G + L DVF R DI+ RVV WQLAKR+ GTH K + EVSGT KK
Sbjct: 19 VPVITLDNGKAGDIDLPDDVFATSPRADIMARVVHWQLAKRRAGTHKVKGMGEVSGTTKK 78
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQKGTG AR G+LR PQFR G +HGP R H LNKKVRRLGL ALS +AAEGKL
Sbjct: 79 PYRQKGTGNARQGSLRAPQFRTGGVVHGPVVRDHGYSLNKKVRRLGLISALSQKAAEGKL 138
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + +E+ + + + K L+ D + E A +NL +VNVLPS G N
Sbjct: 139 IVLDTVELGADAKTSALAAKVKALGWKSALVVD-AAVEEGFGRAVRNLPHVNVLPSPGAN 197
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL HD L ++R V + +R+
Sbjct: 198 VYDILNHDVLAVTRAGVEALKERL 221
>gi|402703209|ref|ZP_10851188.1| 50S ribosomal protein L4 [Rickettsia helvetica C9P9]
Length = 207
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 94/203 (46%), Positives = 135/203 (66%), Gaps = 2/203 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L+ D+F V IR DII RV+ WQ AK G H TKT+SEVSGT KKP
Sbjct: 5 ILSLANEEVGEISLSEDIFAVEFIRDDIIKRVIDWQRAKAMSGNHKTKTVSEVSGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGP+ RSHA KL KKVR+LGL ALS + AEGKLL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKFAEGKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNV 281
V + L++ KT ++N N+ + K + DG + LA +N++ ++P +G NV
Sbjct: 125 VIDSLKLDKPKTSALINILNKFQG-KSFFVIDGNEVDINFSLAAKNIYNTVIVPQIGANV 183
Query: 282 YSILQHDTLVMSRDAVNKIVDRM 304
Y I++H+ +++S++AV+ + +R+
Sbjct: 184 YDIIRHEYVLLSQEAVSVLEERL 206
>gi|51473838|ref|YP_067595.1| 50S ribosomal protein L4 [Rickettsia typhi str. Wilmington]
gi|383752614|ref|YP_005427714.1| 50S ribosomal protein L4 [Rickettsia typhi str. TH1527]
gi|383843450|ref|YP_005423953.1| 50S ribosomal protein L4 [Rickettsia typhi str. B9991CWPP]
gi|81610771|sp|Q68W79.1|RL4_RICTY RecName: Full=50S ribosomal protein L4
gi|51460150|gb|AAU04113.1| 50S ribosomal protein L4 [Rickettsia typhi str. Wilmington]
gi|380759257|gb|AFE54492.1| 50S ribosomal protein L4 [Rickettsia typhi str. TH1527]
gi|380760097|gb|AFE55331.1| 50S ribosomal protein L4 [Rickettsia typhi str. B9991CWPP]
Length = 207
Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 94/203 (46%), Positives = 134/203 (66%), Gaps = 2/203 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEVSGT KKP
Sbjct: 5 ILSLANEEVGEITLNKDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVSGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGPK RSHAIKL KKVR+LGL ALS + A GKLL
Sbjct: 65 FKQKGTGNARQGSLRSIQMRGGGISHGPKVRSHAIKLPKKVRKLGLIHALSEKCAAGKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNV 281
+ L++ KT +VN N+ + + + DG + LAT+N++ ++P +G NV
Sbjct: 125 IINSLKLEKPKTSVLVNLLNKFQG-QSFFIIDGNKVDTNFSLATKNIYNTLIVPQIGANV 183
Query: 282 YSILQHDTLVMSRDAVNKIVDRM 304
Y I++H+ +++S++AV+ + +R+
Sbjct: 184 YDIIRHEYVLLSQEAVSFLEERL 206
>gi|114704485|ref|ZP_01437393.1| 50S ribosomal protein L4 [Fulvimarina pelagi HTCC2506]
gi|114539270|gb|EAU42390.1| 50S ribosomal protein L4 [Fulvimarina pelagi HTCC2506]
Length = 206
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 94/203 (46%), Positives = 132/203 (65%), Gaps = 1/203 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + D G + L+ +F + R+DI+HR+VR+QLAKRQQGTHST S+V+ TG K
Sbjct: 3 VTIKKLDGADAGTVTLSEAIFGLDPRQDILHRMVRYQLAKRQQGTHSTLGRSDVARTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
+RQKGTGRARH T + PQFRGG HGP PRSHAI L KK+R L LK ALSA+A G L
Sbjct: 63 MYRQKGTGRARHSTAKAPQFRGGGIAHGPTPRSHAIDLPKKLRALALKHALSAKAKSGGL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V ++L+ KTK +V + + + L+ G + + A++N+ ++VLP G+N
Sbjct: 123 IVIDELKADEGKTKSMVKSFAGL-GIENALIIGGSELDQNFARASRNIAKIDVLPVQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDR 303
VY IL+ TLV+S+ AV + +R
Sbjct: 182 VYDILRRQTLVLSKSAVEALEER 204
>gi|67458671|ref|YP_246295.1| 50S ribosomal protein L4 [Rickettsia felis URRWXCal2]
gi|75536864|sp|Q4UMS8.1|RL4_RICFE RecName: Full=50S ribosomal protein L4
gi|67004204|gb|AAY61130.1| 50S ribosomal protein L4 [Rickettsia felis URRWXCal2]
Length = 207
Score = 183 bits (465), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 94/203 (46%), Positives = 134/203 (66%), Gaps = 2/203 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEVSGT KKP
Sbjct: 5 ILSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVSGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGP+ RSHA KL KKVR+LGL ALS + AEGKLL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKFAEGKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNV 281
V + L++ KT +VN N+ + K + DG + LA +N++ ++P +G NV
Sbjct: 125 VIDSLKLDKPKTSVLVNILNKFQG-KSFFVIDGNEVDTNFSLAAKNIYNTVIVPQIGANV 183
Query: 282 YSILQHDTLVMSRDAVNKIVDRM 304
Y I++H+ +++S++AV+ + +R+
Sbjct: 184 YDIIRHEYVLLSQEAVSVLEERL 206
>gi|157804034|ref|YP_001492583.1| 50S ribosomal protein L4 [Rickettsia canadensis str. McKiel]
gi|379023181|ref|YP_005299842.1| 50S ribosomal protein L4 [Rickettsia canadensis str. CA410]
gi|166199857|sp|A8EZL5.1|RL4_RICCK RecName: Full=50S ribosomal protein L4
gi|157785297|gb|ABV73798.1| 50S ribosomal protein L4 [Rickettsia canadensis str. McKiel]
gi|376324119|gb|AFB21360.1| 50S ribosomal protein L4 [Rickettsia canadensis str. CA410]
Length = 207
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 94/203 (46%), Positives = 134/203 (66%), Gaps = 2/203 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEVSGT KKP
Sbjct: 5 ILSLANEEVGEISLNKDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVSGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGP RSHA +L KKVR+LGL ALS + AEGKLL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGLAHGPIVRSHATQLPKKVRKLGLIHALSEKFAEGKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNV 281
V + L++ KT F+VN N+ + + + DG + LA +N++ ++P +G NV
Sbjct: 125 VIDSLKLDKPKTSFLVNILNKFQG-QSFFVIDGNEVDINFSLAAKNIYNTVIVPQIGANV 183
Query: 282 YSILQHDTLVMSRDAVNKIVDRM 304
Y I++H+ +++S++AVN + +R+
Sbjct: 184 YDIIRHEYVLLSQEAVNVLEERL 206
>gi|308809341|ref|XP_003081980.1| 50S ribosomal protein L4 (ISS) [Ostreococcus tauri]
gi|116060447|emb|CAL55783.1| 50S ribosomal protein L4 (ISS) [Ostreococcus tauri]
Length = 275
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 133/225 (59%), Gaps = 27/225 (12%)
Query: 111 KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRA 170
+G L G +FD P+R D+ HRVVRWQ AK + GTH TKT EVSGT +K QKG GRA
Sbjct: 53 RGEATLPGRIFDQPLRVDVAHRVVRWQRAKARAGTHKTKTRGEVSGTTRKARPQKGQGRA 112
Query: 171 RHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPS 230
R G LR PQ RGG HGP PRSHA L KKVRR+GLK+ALSARAAEGK+++ +
Sbjct: 113 RVGMLRAPQMRGGGVAHGPVPRSHAYALPKKVRRMGLKVALSARAAEGKIVIVDSFAGME 172
Query: 231 HKTKFIVNYYNQMENTKKVLLCDGGCIH-------------------------EKLKLAT 265
KT+ + ++ T + L GG H E +++++
Sbjct: 173 PKTRVMKETLERL--TGDMGLAAGGKFHSTLIVDGEFEETSEEDDDEETYSPNEIVRISS 230
Query: 266 QNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNKIVDRMHTPINR 310
+NL +V VLP +G NVYSIL+ TLVM++ + +++ R+ PI R
Sbjct: 231 RNLPHVEVLPQIGANVYSILRRRTLVMTKSGLEQLIRRLDEPIRR 275
>gi|383501401|ref|YP_005414760.1| 50S ribosomal protein L4 [Rickettsia australis str. Cutlack]
gi|378932412|gb|AFC70917.1| 50S ribosomal protein L4 [Rickettsia australis str. Cutlack]
Length = 207
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 93/203 (45%), Positives = 135/203 (66%), Gaps = 2/203 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEVSGT KKP
Sbjct: 5 ILSLANEEVGEISLNEDIFAVEFIRNDIIKQVIDWQRAKAMSGNHKTKTVSEVSGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGP+ RSHA KL KKVR+LGL ALS + AEGKLL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKFAEGKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNV 281
V + L++ KT +VN ++ + K + DG + LA +N++ + ++P VG NV
Sbjct: 125 VIDSLKLDQPKTSALVNILSKFQG-KSFFVIDGNEVDTNFSLAAKNIYNIVIVPQVGANV 183
Query: 282 YSILQHDTLVMSRDAVNKIVDRM 304
Y I++++ +++S++AV+ + +R+
Sbjct: 184 YDIIRYEYVILSQEAVSVLEERL 206
>gi|218290004|ref|ZP_03494181.1| ribosomal protein L4/L1e [Alicyclobacillus acidocaldarius LAA1]
gi|218239989|gb|EED07176.1| ribosomal protein L4/L1e [Alicyclobacillus acidocaldarius LAA1]
Length = 206
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/202 (47%), Positives = 133/202 (65%), Gaps = 2/202 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N + G + L +F PIR D++H VV LA R++GTH TKT +EVSG G+K
Sbjct: 4 VAVLNTAGQQVGEIELNEKIFGAPIRPDLMHIVVLQYLAARRRGTHKTKTRAEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+RGG +HGP PRS+A K+ KKVRR L ALS++ EGK+
Sbjct: 64 PWRQKGTGRARQGSIRAPQWRGGGVVHGPVPRSYAFKVPKKVRRAALYSALSSKVQEGKI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V E LE KTK +V + N +K L+ DG + + L+ +N+ V + + GLN
Sbjct: 124 VVVEGLEFERPKTKDMVGVLRNL-NVEKALIVDGEK-KQPVYLSARNIPNVKYMEAAGLN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVD 302
VY +L+HD LV+++DAV K+ +
Sbjct: 182 VYELLRHDHLVLTKDAVQKVEE 203
>gi|258512669|ref|YP_003186103.1| 50S ribosomal protein L4 [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|257479395|gb|ACV59714.1| ribosomal protein L4/L1e [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
Length = 206
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 95/202 (47%), Positives = 133/202 (65%), Gaps = 2/202 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N + G + L +F PIR D++H VV LA R++GTH TKT +EVSG G+K
Sbjct: 4 VAVLNTAGQQVGEIELNEKIFGAPIRPDLMHIVVLQYLAARRRGTHKTKTRAEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+RGG +HGP PRS+A K+ KKVRR L ALS++ EGK+
Sbjct: 64 PWRQKGTGRARQGSIRAPQWRGGGVVHGPVPRSYAFKVPKKVRRAALYSALSSKVQEGKI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V E LE KTK +V + N +K L+ DG + + L+ +N+ V + + GLN
Sbjct: 124 VVVEGLEFERPKTKDMVGVLRNL-NVEKALIIDGEK-KQPVYLSARNIPNVKYMEAAGLN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVD 302
VY +L+HD LV+++DAV K+ +
Sbjct: 182 VYELLRHDHLVLTKDAVQKVEE 203
>gi|384136730|ref|YP_005519444.1| 50S ribosomal protein L4 [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
gi|339290815|gb|AEJ44925.1| ribosomal protein L4/L1e [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
Length = 203
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 95/202 (47%), Positives = 133/202 (65%), Gaps = 2/202 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N + G + L +F PIR D++H VV LA R++GTH TKT +EVSG G+K
Sbjct: 1 MAVLNTAGQQVGEIELNEKIFGAPIRPDLMHIVVLQYLAARRRGTHKTKTRAEVSGGGRK 60
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+RGG +HGP PRS+A K+ KKVRR L ALS++ EGK+
Sbjct: 61 PWRQKGTGRARQGSIRAPQWRGGGVVHGPVPRSYAFKVPKKVRRAALYSALSSKVQEGKI 120
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V E LE KTK +V + N +K L+ DG + + L+ +N+ V + + GLN
Sbjct: 121 VVVEGLEFERPKTKDMVGVLRNL-NVEKALIVDGEK-KQPVYLSARNIPNVKYMEAAGLN 178
Query: 281 VYSILQHDTLVMSRDAVNKIVD 302
VY +L+HD LV+++DAV K+ +
Sbjct: 179 VYELLRHDHLVLTKDAVQKVEE 200
>gi|281206127|gb|EFA80316.1| hypothetical protein PPL_07147 [Polysphondylium pallidum PN500]
Length = 318
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 97/205 (47%), Positives = 133/205 (64%), Gaps = 4/205 (1%)
Query: 101 IPVTNFFN-EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
+PV NF + E+ G + L +F VP+R DI+HR+VRWQ AK QGTH + + ++ T K
Sbjct: 111 VPVVNFKSKENVGEIQLLKSIFSVPLRVDILHRIVRWQRAKAMQGTHYAQNMGDIDRTNK 170
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
KP+ QKGTGRAR GT Q +GG PKPR H+ L KKVRRLGLK+AL+ + A+ K
Sbjct: 171 KPFSQKGTGRARQGTNHAIQMKGGARAFPPKPRDHSFSLPKKVRRLGLKVALATKLAQNK 230
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGL 279
L++ E+LE+ SHKTK + E + LL D I L LA N+ +++LP GL
Sbjct: 231 LVIVENLELESHKTKDLDTLL--PEQWGRSLLVDKE-ISSNLSLAGFNIKRIDLLPERGL 287
Query: 280 NVYSILQHDTLVMSRDAVNKIVDRM 304
NVYSILQ DTLV++R ++++I R+
Sbjct: 288 NVYSILQKDTLVLTRASLDEIQKRL 312
>gi|379712749|ref|YP_005301088.1| 50S ribosomal protein L4 [Rickettsia philipii str. 364D]
gi|376329394|gb|AFB26631.1| 50S ribosomal protein L4 [Rickettsia philipii str. 364D]
Length = 207
Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 93/203 (45%), Positives = 133/203 (65%), Gaps = 2/203 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEV GT KKP
Sbjct: 5 ILSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGP+ RSHA KL KKVR+LGL ALS + AEGKLL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKCAEGKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNV 281
V + L++ KT +VN N+ + K + DG + LA +N++ ++P +G NV
Sbjct: 125 VIDSLKLDKPKTSALVNILNKFQG-KSFFVIDGNEVDINFSLAAKNIYNTVIVPQIGANV 183
Query: 282 YSILQHDTLVMSRDAVNKIVDRM 304
Y I++H+ +++S++AV+ + +R+
Sbjct: 184 YDIIRHEYVLLSQEAVSALEERL 206
>gi|157828859|ref|YP_001495101.1| 50S ribosomal protein L4 [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165933586|ref|YP_001650375.1| 50S ribosomal protein L4 [Rickettsia rickettsii str. Iowa]
gi|378721682|ref|YP_005286569.1| 50S ribosomal protein L4 [Rickettsia rickettsii str. Colombia]
gi|378723029|ref|YP_005287915.1| 50S ribosomal protein L4 [Rickettsia rickettsii str. Arizona]
gi|378724383|ref|YP_005289267.1| 50S ribosomal protein L4 [Rickettsia rickettsii str. Hauke]
gi|379016071|ref|YP_005292306.1| 50S ribosomal protein L4 [Rickettsia rickettsii str. Brazil]
gi|379018168|ref|YP_005294403.1| 50S ribosomal protein L4 [Rickettsia rickettsii str. Hino]
gi|166199858|sp|A8GT68.1|RL4_RICRS RecName: Full=50S ribosomal protein L4
gi|189042881|sp|B0BUQ9.1|RL4_RICRO RecName: Full=50S ribosomal protein L4
gi|157801340|gb|ABV76593.1| 50S ribosomal protein L4 [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165908673|gb|ABY72969.1| LSU ribosomal protein L1E (= L4P) [Rickettsia rickettsii str. Iowa]
gi|376324595|gb|AFB21835.1| 50S ribosomal protein L4 [Rickettsia rickettsii str. Brazil]
gi|376326706|gb|AFB23945.1| 50S ribosomal protein L4 [Rickettsia rickettsii str. Colombia]
gi|376328053|gb|AFB25291.1| 50S ribosomal protein L4 [Rickettsia rickettsii str. Arizona]
gi|376330734|gb|AFB27970.1| 50S ribosomal protein L4 [Rickettsia rickettsii str. Hino]
gi|376333398|gb|AFB30631.1| 50S ribosomal protein L4 [Rickettsia rickettsii str. Hauke]
Length = 207
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 94/203 (46%), Positives = 133/203 (65%), Gaps = 2/203 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEV GT KKP
Sbjct: 5 ILSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGP+ RSHA KL KKVR+LGL ALS + AEGKLL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKCAEGKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNV 281
V + L++ KT +VN N+ + K + DG + LA +N++ V+P +G NV
Sbjct: 125 VIDSLKLDKPKTSALVNILNKFQG-KSFFVIDGNEVDINFSLAAKNIYNTVVVPQIGANV 183
Query: 282 YSILQHDTLVMSRDAVNKIVDRM 304
Y I++H+ +++S++AV+ + +R+
Sbjct: 184 YDIIRHEYVLLSQEAVSVLEERL 206
>gi|238650971|ref|YP_002916827.1| 50S ribosomal protein L4 [Rickettsia peacockii str. Rustic]
gi|379019482|ref|YP_005295716.1| 50S ribosomal protein L4 [Rickettsia rickettsii str. Hlp#2]
gi|259491568|sp|C4K2H8.1|RL4_RICPU RecName: Full=50S ribosomal protein L4
gi|238625069|gb|ACR47775.1| 50S ribosomal protein L4 [Rickettsia peacockii str. Rustic]
gi|376332062|gb|AFB29296.1| 50S ribosomal protein L4 [Rickettsia rickettsii str. Hlp#2]
Length = 207
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 93/203 (45%), Positives = 133/203 (65%), Gaps = 2/203 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEV GT KKP
Sbjct: 5 ILSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGP+ RSHA KL KKVR+LGL ALS + AEGKLL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKCAEGKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNV 281
V + L++ KT +VN N+ + K + DG + LA +N++ ++P +G NV
Sbjct: 125 VIDSLKLDKPKTSVLVNILNKFQG-KSFFVIDGNEVDINFSLAAKNIYNTVIVPQIGANV 183
Query: 282 YSILQHDTLVMSRDAVNKIVDRM 304
Y I++H+ +++S++AV+ + +R+
Sbjct: 184 YDIIRHEYVLLSQEAVSVLEERL 206
>gi|341584193|ref|YP_004764684.1| 50S ribosomal protein L4 [Rickettsia heilongjiangensis 054]
gi|350273786|ref|YP_004885099.1| 50S ribosomal protein L4 [Rickettsia japonica YH]
gi|340808418|gb|AEK75006.1| 50S ribosomal protein L4 [Rickettsia heilongjiangensis 054]
gi|348592999|dbj|BAK96960.1| 50S ribosomal protein L4 [Rickettsia japonica YH]
Length = 207
Score = 180 bits (457), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 93/203 (45%), Positives = 133/203 (65%), Gaps = 2/203 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEV GT KKP
Sbjct: 5 ILSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGP+ RSHA KL KKVR+LGL ALS + AEGKLL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKCAEGKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNV 281
V + L++ KT +VN N+ + K + DG + LA +N++ ++P +G NV
Sbjct: 125 VIDSLKLDKPKTSALVNILNKFQG-KSFFVIDGNEVDVNFSLAAKNIYNTVIVPQIGANV 183
Query: 282 YSILQHDTLVMSRDAVNKIVDRM 304
Y I++H+ +++S++AV+ + +R+
Sbjct: 184 YDIIRHEYVLLSQEAVSVLEERL 206
>gi|15892928|ref|NP_360642.1| 50S ribosomal protein L4 [Rickettsia conorii str. Malish 7]
gi|34581370|ref|ZP_00142850.1| 50S ribosomal protein L4 [Rickettsia sibirica 246]
gi|374319602|ref|YP_005066101.1| 50S ribosomal protein L4 [Rickettsia slovaca 13-B]
gi|383484334|ref|YP_005393247.1| 50S ribosomal protein L4 [Rickettsia parkeri str. Portsmouth]
gi|383751644|ref|YP_005426745.1| 50S ribosomal protein L4 [Rickettsia slovaca str. D-CWPP]
gi|46577283|sp|Q92GW7.1|RL4_RICCN RecName: Full=50S ribosomal protein L4
gi|15620120|gb|AAL03543.1| 50S ribosomal protein L4 [Rickettsia conorii str. Malish 7]
gi|28262755|gb|EAA26259.1| 50S ribosomal protein L4 [Rickettsia sibirica 246]
gi|360042151|gb|AEV92533.1| 50S ribosomal protein L4 [Rickettsia slovaca 13-B]
gi|378936688|gb|AFC75188.1| 50S ribosomal protein L4 [Rickettsia parkeri str. Portsmouth]
gi|379774658|gb|AFD20014.1| 50S ribosomal protein L4 [Rickettsia slovaca str. D-CWPP]
Length = 207
Score = 180 bits (456), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 93/203 (45%), Positives = 133/203 (65%), Gaps = 2/203 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEV GT KKP
Sbjct: 5 ILSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGP+ RSHA KL KKVR+LGL ALS + AEGKLL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKCAEGKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNV 281
V + L++ KT +VN N+ + K + DG + LA +N++ ++P +G NV
Sbjct: 125 VIDSLKLDKPKTSALVNILNKFQG-KSFFVIDGNEVDINFSLAAKNIYNTVIVPQIGANV 183
Query: 282 YSILQHDTLVMSRDAVNKIVDRM 304
Y I++H+ +++S++AV+ + +R+
Sbjct: 184 YDIIRHEYVLLSQEAVSVLEERL 206
>gi|229587008|ref|YP_002845509.1| 50S ribosomal protein L4 [Rickettsia africae ESF-5]
gi|259491567|sp|C3PPA6.1|RL4_RICAE RecName: Full=50S ribosomal protein L4
gi|228022058|gb|ACP53766.1| 50S ribosomal protein L4 [Rickettsia africae ESF-5]
Length = 207
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/198 (46%), Positives = 131/198 (66%), Gaps = 2/198 (1%)
Query: 108 NEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKG 166
NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEV GT KKP++QKG
Sbjct: 10 NEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGTTKKPFKQKG 69
Query: 167 TGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL 226
TG AR G+LR Q RGG HGP+ RSHA KL KKVR+LGL ALS + AEGKLLV + L
Sbjct: 70 TGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKCAEGKLLVIDSL 129
Query: 227 EVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQ 286
++ KT +VN N+ + K + DG + LA +N++ ++P +G NVY I++
Sbjct: 130 KLDKPKTSALVNILNKFQG-KSFFVIDGNEVDINFSLAAKNIYNTVIVPQIGANVYDIIR 188
Query: 287 HDTLVMSRDAVNKIVDRM 304
H+ +++S++AV+ + +R+
Sbjct: 189 HEYVLLSQEAVSVLEERL 206
>gi|15604504|ref|NP_221022.1| 50S ribosomal protein L4 [Rickettsia prowazekii str. Madrid E]
gi|383486649|ref|YP_005404329.1| 50S ribosomal protein L4 [Rickettsia prowazekii str. GvV257]
gi|383488057|ref|YP_005405736.1| 50S ribosomal protein L4 [Rickettsia prowazekii str. Chernikova]
gi|383488902|ref|YP_005406580.1| 50S ribosomal protein L4 [Rickettsia prowazekii str. Katsinyian]
gi|383489742|ref|YP_005407419.1| 50S ribosomal protein L4 [Rickettsia prowazekii str. Dachau]
gi|383499882|ref|YP_005413243.1| 50S ribosomal protein L4 [Rickettsia prowazekii str. BuV67-CWPP]
gi|383500719|ref|YP_005414079.1| 50S ribosomal protein L4 [Rickettsia prowazekii str. RpGvF24]
gi|386082522|ref|YP_005999099.1| 50S ribosomal protein L4 [Rickettsia prowazekii str. Rp22]
gi|6226007|sp|Q9ZCQ6.1|RL4_RICPR RecName: Full=50S ribosomal protein L4
gi|3861198|emb|CAA15098.1| 50S RIBOSOMAL PROTEIN L4 (rplD) [Rickettsia prowazekii str. Madrid
E]
gi|292572286|gb|ADE30201.1| 50S ribosomal protein L4 [Rickettsia prowazekii str. Rp22]
gi|380757014|gb|AFE52251.1| 50S ribosomal protein L4 [Rickettsia prowazekii str. GvV257]
gi|380758416|gb|AFE53652.1| 50S ribosomal protein L4 [Rickettsia prowazekii str. RpGvF24]
gi|380760936|gb|AFE49458.1| 50S ribosomal protein L4 [Rickettsia prowazekii str. Chernikova]
gi|380761781|gb|AFE50302.1| 50S ribosomal protein L4 [Rickettsia prowazekii str. Katsinyian]
gi|380762628|gb|AFE51148.1| 50S ribosomal protein L4 [Rickettsia prowazekii str. BuV67-CWPP]
gi|380763465|gb|AFE51984.1| 50S ribosomal protein L4 [Rickettsia prowazekii str. Dachau]
Length = 207
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/203 (45%), Positives = 135/203 (66%), Gaps = 2/203 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEVSGT KKP
Sbjct: 5 ILSLANEEVGEITLNKDIFAVEFIRDDIIKQVIDWQRAKAMFGNHKTKTVSEVSGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGPK RSHAIKL KKVR+LGL ALS + AE KLL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGISHGPKVRSHAIKLPKKVRKLGLIHALSEKYAEEKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNV 281
+ + L++ KT +VN ++ + + + DG + LAT+N++ ++P +G NV
Sbjct: 125 IIDSLKLDKPKTSILVNLLSKFQG-QSFFVIDGNKVDINFSLATKNIYNTLIVPQIGANV 183
Query: 282 YSILQHDTLVMSRDAVNKIVDRM 304
Y I++H+ +++S++AV+ + +R+
Sbjct: 184 YDIIRHEYVLLSQEAVSFLEERL 206
>gi|348688832|gb|EGZ28646.1| hypothetical protein PHYSODRAFT_552366 [Phytophthora sojae]
Length = 277
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 106/265 (40%), Positives = 151/265 (56%), Gaps = 14/265 (5%)
Query: 52 SGLSFLASRKFSTTILTPDSSEGAFPSDLLL--KKTVLTPDITIGLHQDLVIPVTNF--- 106
+ LS A R ++ + + A P++L L +K + P + + V P +
Sbjct: 14 AALSVSAPR--ASLVRAASTQAAAMPANLSLAEEKPMPPPRVIPAAQEVKVTPSGDLELQ 71
Query: 107 ---FNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
ED G + + G+VF P R DI+ RVVRWQLA R+ GT+ TKT SEVSG+ +K
Sbjct: 72 LLSLAEDSQELGTVTMDGEVFGAPDRVDILQRVVRWQLACRRAGTNKTKTRSEVSGSTRK 131
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKG+GRAR G +R PQ+RGG +HGP R + L KKVR +GL++ALS + EGKL
Sbjct: 132 PWKQKGSGRARVGDIRAPQWRGGYRVHGPVLRDFSYNLPKKVRAMGLRVALSTKLREGKL 191
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
V + L+V KTK + L G + LAT+N+ YV+ LP +N
Sbjct: 192 AVVDSLDVDVTKTKDMKKLLGG-RGWDHALFVGGEEVESSFVLATRNIPYVDTLPQNKIN 250
Query: 281 VYSILQHDTLVMSRDAVNKIVDRMH 305
VYSILQ D L++++DAV + +R+H
Sbjct: 251 VYSILQKDLLIITKDAVKYLEERLH 275
>gi|407771094|ref|ZP_11118457.1| 50S ribosomal protein L4 [Thalassospira xiamenensis M-5 = DSM
17429]
gi|407285983|gb|EKF11476.1| 50S ribosomal protein L4 [Thalassospira xiamenensis M-5 = DSM
17429]
Length = 206
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/193 (47%), Positives = 127/193 (65%), Gaps = 1/193 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + LA ++F + +R+DI+HR+V WQLAKR+ GTH K SE+S T KK RQKG+G AR
Sbjct: 14 GNIDLAEEIFGLDVRRDILHRMVNWQLAKRRAGTHKVKEKSEISATTKKFVRQKGSGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG+ + QFRGG HGP+ R H+ L KK R+L LK ALSA+A +GKL+V + E
Sbjct: 74 HGSRKAVQFRGGGVAHGPRVRDHSHDLTKKFRKLALKTALSAKAKDGKLIVLDSAEFSDA 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KTK +V + ++ K L+ DG I+E A +N+ V+VLP +G NVY IL+ DTLV
Sbjct: 134 KTKNLVAAFAKL-GWKSALIIDGAQINEGFARAARNIPQVDVLPEIGANVYDILRRDTLV 192
Query: 292 MSRDAVNKIVDRM 304
+++ AV + R+
Sbjct: 193 LTKGAVEALEARL 205
>gi|296533988|ref|ZP_06896504.1| ribosomal protein L4/L1 family protein [Roseomonas cervicalis ATCC
49957]
gi|296265654|gb|EFH11763.1| ribosomal protein L4/L1 family protein [Roseomonas cervicalis ATCC
49957]
Length = 206
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/204 (47%), Positives = 124/204 (60%), Gaps = 1/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+PV N G + L +F R DI+ RVV WQLAKR+ GTH K + EVSGT KK
Sbjct: 3 LPVITLDNGQAGEIDLPDALFAAAPRADIMARVVHWQLAKRRAGTHKVKGMGEVSGTTKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQKGTG AR G+LR PQFR G +HGP R H LNKKVRRLGL ALS +AAEGKL
Sbjct: 63 PYRQKGTGNARQGSLRAPQFRTGGAVHGPVVRDHGYSLNKKVRRLGLISALSQKAAEGKL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + + + + + K L+ D + + A +NL VNVLPS+G N
Sbjct: 123 VVLDTAALGADAKTSAMASKVKALGWKSALVVD-AQVEDGFGRAVRNLKNVNVLPSMGAN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL+HD L ++R AV+ + +R+
Sbjct: 182 VYDILKHDVLAVTRQAVDALKERL 205
>gi|239948318|ref|ZP_04700071.1| ribosomal protein L4/L1 family protein [Rickettsia endosymbiont of
Ixodes scapularis]
gi|241563414|ref|XP_002401694.1| ribosomal protein L4, putative [Ixodes scapularis]
gi|215501886|gb|EEC11380.1| ribosomal protein L4, putative [Ixodes scapularis]
gi|239922594|gb|EER22618.1| ribosomal protein L4/L1 family protein [Rickettsia endosymbiont of
Ixodes scapularis]
Length = 207
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/203 (45%), Positives = 133/203 (65%), Gaps = 2/203 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEVSGT KKP
Sbjct: 5 ILSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVSGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGP+ RSHA KL KKVR+LGL ALS + AEGKLL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKFAEGKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNV 281
V + L++ KT +VN N+ + K + D + LA +N++ ++P +G NV
Sbjct: 125 VIDSLKLDKPKTSALVNILNKFQG-KSFFVIDRNEVDINFSLAAKNIYNTVIVPQIGANV 183
Query: 282 YSILQHDTLVMSRDAVNKIVDRM 304
Y I++H+ +++S++AV+ + +R+
Sbjct: 184 YDIIRHEYVLLSQEAVSVLEERL 206
>gi|383482518|ref|YP_005391432.1| 50S ribosomal protein L4 [Rickettsia montanensis str. OSU 85-930]
gi|378934872|gb|AFC73373.1| 50S ribosomal protein L4 [Rickettsia montanensis str. OSU 85-930]
Length = 207
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 92/203 (45%), Positives = 133/203 (65%), Gaps = 2/203 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L D+F V IR DI+ +V+ WQ AK G H TKT+SEV GT KKP
Sbjct: 5 ILSLANEEVGEISLNEDIFAVEFIRDDIVKQVIDWQRAKAMSGNHKTKTVSEVLGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGP+ RSHA KL KKVR+LGL ALS + AEGKLL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKFAEGKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNV 281
V + L++ KT +VN N+ + K + DG + LA +N++ ++P +G NV
Sbjct: 125 VIDSLKLDKPKTSALVNILNKFQG-KSFFVIDGNEVDINFSLAAKNIYNTVIVPQIGANV 183
Query: 282 YSILQHDTLVMSRDAVNKIVDRM 304
Y I++H+ +++S++AV+ + +R+
Sbjct: 184 YDIIRHEYVLLSQEAVSVLEERL 206
>gi|319783321|ref|YP_004142797.1| 50S ribosomal protein L4 [Mesorhizobium ciceri biovar biserrulae
WSM1271]
gi|317169209|gb|ADV12747.1| ribosomal protein L4/L1e [Mesorhizobium ciceri biovar biserrulae
WSM1271]
Length = 206
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 92/203 (45%), Positives = 133/203 (65%), Gaps = 1/203 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ +T +D G + L+ ++F + R+DI+ RVVRWQLAK+QQGTH TK +E++ TG K
Sbjct: 3 LKITTLGGKDAGKVELSDEIFGLDPREDILQRVVRWQLAKKQQGTHKTKGRAEIARTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP RSH +L KKVR LGLK ALSA+A +
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHELPKKVRALGLKHALSAKAKSASI 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
++ ++L++ KTK ++ + + T LL G + + KLA N+ ++VLP G+N
Sbjct: 123 IIIDELKLTEAKTKALIANFATLGLT-NALLIGGAELDKNFKLAATNIPNIDVLPIQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDR 303
VY IL+ TLV+S+ AV + +R
Sbjct: 182 VYDILRRGTLVLSKAAVEALEER 204
>gi|340030726|ref|ZP_08666789.1| 50S ribosomal protein L4 [Paracoccus sp. TRP]
Length = 206
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 95/193 (49%), Positives = 125/193 (64%), Gaps = 1/193 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ D+F + R DI+HRVVRWQ AK Q GTHS S+VS + KK +RQKGTG AR
Sbjct: 14 GNIELSDDIFGLEPRADILHRVVRWQRAKAQAGTHSVLGKSDVSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG+ + P FR G GP PRSHA L KKVR LGLK ALSA+AA G+L++ E+L +
Sbjct: 74 HGSRKAPIFRHGGVYKGPTPRSHAFDLPKKVRALGLKHALSAKAAAGELVIVENLNIAEA 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KT + + K+VL+ DG ++E A +NL V+VLPS+G NVY IL+ DTLV
Sbjct: 134 KTGAVAKAVKE-NGWKRVLVIDGAEVNETFARAARNLEGVDVLPSIGANVYDILRRDTLV 192
Query: 292 MSRDAVNKIVDRM 304
++R V + R+
Sbjct: 193 LTRAGVEALEARL 205
>gi|409402007|ref|ZP_11251633.1| 50S ribosomal protein L4 [Acidocella sp. MX-AZ02]
gi|409129325|gb|EKM99183.1| 50S ribosomal protein L4 [Acidocella sp. MX-AZ02]
Length = 204
Score = 177 bits (449), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 96/204 (47%), Positives = 129/204 (63%), Gaps = 3/204 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V +F + G + L ++F R DII RV+ WQLAKR+ GTH K + EVSGT +K
Sbjct: 3 LDVVDFDAKAAGSVELPDELFAAEPRVDIIARVIHWQLAKRRAGTHKVKGMGEVSGTTRK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P++QKGTG AR G+LR PQFR G +HGP R H LNKKVRRLGL ALSA+AAEGKL
Sbjct: 63 PYKQKGTGNARQGSLRAPQFRTGGAVHGPVVRDHGYSLNKKVRRLGLISALSAKAAEGKL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + + KTK + K L+ D + EK A++N+ ++VLP VG N
Sbjct: 123 VVLDGVAALD-KTKDVAAKVANF-GWKSALIVD-AAVEEKFGRASRNVKGLDVLPVVGAN 179
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY I+QHD LV+++ AV + +R+
Sbjct: 180 VYDIMQHDVLVVTKAAVEGLKERL 203
>gi|88606786|ref|YP_504893.1| 50S ribosomal protein L4 [Anaplasma phagocytophilum HZ]
gi|109893574|sp|Q2GL58.1|RL4_ANAPZ RecName: Full=50S ribosomal protein L4
gi|88597849|gb|ABD43319.1| ribosomal protein L4 [Anaplasma phagocytophilum HZ]
Length = 208
Score = 177 bits (449), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 92/204 (45%), Positives = 125/204 (61%), Gaps = 1/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N NE G + L VF + R+D++ VV WQLAKR+ GTH K IS++SGT K
Sbjct: 3 VNIVNIANEVVGSIDLNPQVFGLEPRRDVLKEVVNWQLAKRRAGTHKAKGISDISGTTAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQK TGRAR G+LR PQFRGG + GP PRSH LNKKVRRLGLK+ALS + A KL
Sbjct: 63 PYRQKHTGRARQGSLRSPQFRGGAVIFGPVPRSHEYSLNKKVRRLGLKVALSMKVAANKL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + L+V KT + L+ C E ++ A +NL V++L VG+N
Sbjct: 123 VVLDSLDVDLKKTADAKGVFGNFAGHSSYLVVSESCKEEVVR-ACRNLRGVDLLKCVGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
V IL+HD ++++ D V + R+
Sbjct: 182 VLDILKHDCVILTVDTVKSLEGRL 205
>gi|383312961|ref|YP_005365762.1| 50S ribosomal protein L4 [Candidatus Rickettsia amblyommii str.
GAT-30V]
gi|378931621|gb|AFC70130.1| 50S ribosomal protein L4 [Candidatus Rickettsia amblyommii str.
GAT-30V]
Length = 207
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 92/203 (45%), Positives = 132/203 (65%), Gaps = 2/203 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L D+F V IR+DII +V+ WQ AK G H TKT+SEV GT KKP
Sbjct: 5 ILSLANEEVGEISLNEDIFAVEFIREDIIKQVIDWQRAKAMSGNHKTKTVSEVLGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGP+ RSHA L KKVR+LGL ALS + AEGKLL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATTLPKKVRKLGLIHALSEKFAEGKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNV 281
V + L++ KT +VN N+ + K + DG + LA +N++ ++P +G NV
Sbjct: 125 VIDSLKLDKPKTAALVNILNKFQG-KSFFVIDGNEVDINFSLAAKNIYNTVIVPQIGANV 183
Query: 282 YSILQHDTLVMSRDAVNKIVDRM 304
Y I++H+ +++S+ AV+ + +R+
Sbjct: 184 YDIIRHEYILLSQAAVSVLEERL 206
>gi|90417762|ref|ZP_01225674.1| ribosomal protein L4 [Aurantimonas manganoxydans SI85-9A1]
gi|90337434|gb|EAS51085.1| ribosomal protein L4 [Aurantimonas manganoxydans SI85-9A1]
Length = 206
Score = 176 bits (447), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 91/203 (44%), Positives = 128/203 (63%), Gaps = 1/203 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + + +D G LA D+F + R+DI+ R+VRWQLAKRQQG+H T +E++ TG K
Sbjct: 3 VTIKSLDGKDAGTATLADDIFGLEPREDILQRMVRWQLAKRQQGSHQTLGRAEIARTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
+RQKGTGRARHG+ R PQFRGG HGP RSHA L KKVR L L+ ALSA+A G +
Sbjct: 63 LYRQKGTGRARHGSARAPQFRGGGKAHGPVSRSHAHDLPKKVRALALRHALSAKAKSGGI 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V ++L+ KTK +V + + T L G + + +N+ ++VLP G+N
Sbjct: 123 VVIDELKAAEGKTKAMVKTFADLGLT-NALFIGGAELDANFTRSARNIPQMDVLPVQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDR 303
VY IL+ TLV+S+ AV + +R
Sbjct: 182 VYDILRRQTLVLSKAAVEALEER 204
>gi|157826062|ref|YP_001493782.1| 50S ribosomal protein L4 [Rickettsia akari str. Hartford]
gi|166199855|sp|A8GPE9.1|RL4_RICAH RecName: Full=50S ribosomal protein L4
gi|157800020|gb|ABV75274.1| 50S ribosomal protein L4 [Rickettsia akari str. Hartford]
Length = 207
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 89/203 (43%), Positives = 133/203 (65%), Gaps = 2/203 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L D+F V IR D+I +V+ WQ AK G H TKT+SEVSGT KKP
Sbjct: 5 ILSLANEEVGEISLNEDIFAVEFIRDDVIKQVIDWQRAKAMSGNHKTKTVSEVSGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGP+ RSH KL KKVR+LGL ALS + AEG+LL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHVTKLPKKVRKLGLIHALSEKFAEGRLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNV 281
V + L++ KT +VN ++ + K + DG + LA +N++ ++P +G NV
Sbjct: 125 VIDSLKLDQPKTSALVNILSKFQG-KSFFVIDGNEVDTNFSLAAKNIYNTAIVPQIGANV 183
Query: 282 YSILQHDTLVMSRDAVNKIVDRM 304
Y I++++ +++S++AV+ + +R+
Sbjct: 184 YDIIRYEYVLLSQEAVSVLEERL 206
>gi|157964805|ref|YP_001499629.1| 50S ribosomal protein L4 [Rickettsia massiliae MTU5]
gi|157844581|gb|ABV85082.1| 50S ribosomal protein L4 [Rickettsia massiliae MTU5]
Length = 209
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/203 (45%), Positives = 133/203 (65%), Gaps = 2/203 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
V + N++ G + L ++F V IR DII +V+ WQ AK G H TKT+SEV GT KKP
Sbjct: 7 VLSLANKEVGEISLNENIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGTTKKP 66
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGP+ RSHA KL KKVR+LGL ALS + AEGKLL
Sbjct: 67 FKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKCAEGKLL 126
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNV 281
V + L++ KT +VN N+ + K + DG + LA +N++ ++P +G NV
Sbjct: 127 VIDSLKLDKPKTSALVNILNKFQG-KSFCVIDGNEVDINFSLAAKNIYNTVIVPQIGANV 185
Query: 282 YSILQHDTLVMSRDAVNKIVDRM 304
Y I++H+ +++S++AV+ + +R+
Sbjct: 186 YDIIRHEYVLLSQEAVSVLEERL 208
>gi|379713549|ref|YP_005301887.1| 50S ribosomal protein L4 [Rickettsia massiliae str. AZT80]
gi|376334195|gb|AFB31427.1| 50S ribosomal protein L4 [Rickettsia massiliae str. AZT80]
Length = 207
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 91/203 (44%), Positives = 133/203 (65%), Gaps = 2/203 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + N++ G + L ++F V IR DII +V+ WQ AK G H TKT+SEV GT KKP
Sbjct: 5 ILSLANKEVGEISLNENIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGP+ RSHA KL KKVR+LGL ALS + AEGKLL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKCAEGKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNV 281
V + L++ KT +VN N+ + K + DG + LA +N++ ++P +G NV
Sbjct: 125 VIDSLKLDKPKTSALVNILNKFQG-KSFCVIDGNEVDINFSLAAKNIYNTVIVPQIGANV 183
Query: 282 YSILQHDTLVMSRDAVNKIVDRM 304
Y I++H+ +++S++AV+ + +R+
Sbjct: 184 YDIIRHEYVLLSQEAVSVLEERL 206
>gi|227821757|ref|YP_002825727.1| 50S ribosomal protein L4 [Sinorhizobium fredii NGR234]
gi|254803749|sp|C3MAY1.1|RL4_RHISN RecName: Full=50S ribosomal protein L4
gi|227340756|gb|ACP24974.1| 50S ribosomal protein L4 [Sinorhizobium fredii NGR234]
Length = 206
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 126/203 (62%), Gaps = 1/203 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V +D G + L+ +F + R+DII RVVRWQLAKRQQGTH K +EV+ TG K
Sbjct: 3 LTVKTLEGKDAGKVSLSDAIFGLEPREDIIARVVRWQLAKRQQGTHKAKGRAEVARTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP RSHA L KKVR LGL+ ALSA+ ++
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPKKVRALGLRHALSAKLKAEEI 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V +DL KTK + + + T L+ G I KLA QN+ V+VLP G+N
Sbjct: 123 IVLDDLVANEAKTKALAGAFASLGLT-NALIIGGAEIENNFKLAAQNIPNVDVLPVQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDR 303
VY IL+ LV+S+ AV + +R
Sbjct: 182 VYDILRRGKLVLSKAAVEALEER 204
>gi|357028808|ref|ZP_09090833.1| 50S ribosomal protein L4 [Mesorhizobium amorphae CCNWGS0123]
gi|355537508|gb|EHH06764.1| 50S ribosomal protein L4 [Mesorhizobium amorphae CCNWGS0123]
Length = 206
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 91/203 (44%), Positives = 131/203 (64%), Gaps = 1/203 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ +T +D G + L+ ++F + R+DI+ RVVRWQLAK+QQGTH K +E++ TG K
Sbjct: 3 LKITTLGGKDAGKVKLSEEIFGLDPREDILQRVVRWQLAKKQQGTHKAKGRAEIARTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP RSH L KKVR LGLK ALSA+A +
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLKHALSAKAKSASI 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V ++L++ KTK ++ + + T L+ G + + KLA N+ ++VLP G+N
Sbjct: 123 IVIDELKLTEAKTKALIANFATLGLT-NALVIGGAELDQNFKLAATNIPNIDVLPIQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDR 303
VY IL+ TLV+S+ AV + +R
Sbjct: 182 VYDILRRGTLVLSKAAVEALEER 204
>gi|383481895|ref|YP_005390810.1| 50S ribosomal protein L4 [Rickettsia rhipicephali str.
3-7-female6-CWPP]
gi|378934234|gb|AFC72737.1| 50S ribosomal protein L4 [Rickettsia rhipicephali str.
3-7-female6-CWPP]
Length = 207
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 90/203 (44%), Positives = 132/203 (65%), Gaps = 2/203 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + N++ G + L D+F V IR DII +V+ WQ AK G H TKT+SEV GT KKP
Sbjct: 5 ILSLANKEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGP+ RSHA KL KKVR+LGL ALS + EGKLL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKCTEGKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNV 281
V + L++ KT +VN N+ + + + DG + LA +N++ ++P +G NV
Sbjct: 125 VIDSLKLDKPKTSALVNILNKFQG-ESFFVIDGNEVDINFSLAAKNIYNTVIVPQIGANV 183
Query: 282 YSILQHDTLVMSRDAVNKIVDRM 304
Y I++H+ +++S++AV+ + +R+
Sbjct: 184 YDIIRHEYVLLSQEAVSVLEERL 206
>gi|150396208|ref|YP_001326675.1| 50S ribosomal protein L4 [Sinorhizobium medicae WSM419]
gi|166199909|sp|A6U860.1|RL4_SINMW RecName: Full=50S ribosomal protein L4
gi|150027723|gb|ABR59840.1| ribosomal protein L4/L1e [Sinorhizobium medicae WSM419]
Length = 206
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 126/203 (62%), Gaps = 1/203 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V +D G + L+ +F + R+DII RVVRWQLAKRQQGTH K +EVS TG K
Sbjct: 3 LTVKTLEGKDAGKVSLSDAIFGLEPREDIIARVVRWQLAKRQQGTHKAKGRAEVSRTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP RSHA L KKVR LGL+ ALSA+ ++
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPKKVRALGLRHALSAKLKAEEI 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
++ +DL KTK + + + T L+ G I KLA QN+ V+VLP G+N
Sbjct: 123 IIVDDLVANEAKTKALAGAFASLGLT-NALIIGGAEIEGNFKLAAQNIPNVDVLPVQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDR 303
VY IL+ LV+S+ AV + +R
Sbjct: 182 VYDILRRGKLVLSKAAVEALEER 204
>gi|15965110|ref|NP_385463.1| 50S ribosomal protein L4 [Sinorhizobium meliloti 1021]
gi|334315896|ref|YP_004548515.1| 50S ribosomal protein L4 [Sinorhizobium meliloti AK83]
gi|384529068|ref|YP_005713156.1| 50S ribosomal protein L4 [Sinorhizobium meliloti BL225C]
gi|384536652|ref|YP_005720737.1| 50S ribosomal protein L4 [Sinorhizobium meliloti SM11]
gi|407720297|ref|YP_006839959.1| 50S ribosomal protein L4 [Sinorhizobium meliloti Rm41]
gi|418404902|ref|ZP_12978340.1| 50S ribosomal protein L4 [Sinorhizobium meliloti CCNWSX0020]
gi|433613128|ref|YP_007189926.1| 50S ribosomal protein L4, bacterial/organelle [Sinorhizobium
meliloti GR4]
gi|46577284|sp|Q92QG9.1|RL4_RHIME RecName: Full=50S ribosomal protein L4
gi|15074290|emb|CAC45936.1| Probable 50S ribosomal protein L4 [Sinorhizobium meliloti 1021]
gi|333811244|gb|AEG03913.1| ribosomal protein L4/L1e [Sinorhizobium meliloti BL225C]
gi|334094890|gb|AEG52901.1| ribosomal protein L4/L1e [Sinorhizobium meliloti AK83]
gi|336033544|gb|AEH79476.1| 50S ribosomal protein L4 [Sinorhizobium meliloti SM11]
gi|359501166|gb|EHK73790.1| 50S ribosomal protein L4 [Sinorhizobium meliloti CCNWSX0020]
gi|407318529|emb|CCM67133.1| 50S ribosomal protein L4 [Sinorhizobium meliloti Rm41]
gi|429551318|gb|AGA06327.1| 50S ribosomal protein L4, bacterial/organelle [Sinorhizobium
meliloti GR4]
Length = 206
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 96/204 (47%), Positives = 126/204 (61%), Gaps = 1/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V +D G + L+ +F + R+DII RVVRWQLAKRQQGTH +K +EVS TG K
Sbjct: 3 LTVKTLEGKDAGKVSLSDAIFGLEPREDIIARVVRWQLAKRQQGTHKSKGRAEVSRTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP RSHA L KK+R LGL+ ALSA+ +
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPKKIRALGLRHALSAKLKAEDI 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V +DL KTK + + + T L+ G I KLA QN+ V+VLP G+N
Sbjct: 123 IVIDDLVANEAKTKALAGAFASLGLT-NALIIGGAEIEGNFKLAAQNIPNVDVLPVQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL+ LV+S+ AV + +R
Sbjct: 182 VYDILRRGKLVLSKAAVEALEERF 205
>gi|378825668|ref|YP_005188400.1| 50S ribosomal protein L4 BL4 [Sinorhizobium fredii HH103]
gi|365178720|emb|CCE95575.1| 50S ribosomal protein L4 BL4 [Sinorhizobium fredii HH103]
Length = 206
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 94/203 (46%), Positives = 126/203 (62%), Gaps = 1/203 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V +D G + L+ +F + R+DII RV+RWQLAKRQQGTH K +EV+ TG K
Sbjct: 3 LTVKTLEGKDAGKVSLSDAIFGLEPREDIIARVIRWQLAKRQQGTHKAKGRAEVARTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP RSHA L KK+R LGL+ ALSA+ ++
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPKKIRALGLRHALSAKLKAEEI 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V +DL KTK + + + T L+ G I KLA QN+ V+VLP G+N
Sbjct: 123 IVLDDLVANEAKTKALAGAFASLGLT-NALIIGGAEIESNFKLAAQNIPNVDVLPVQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDR 303
VY IL+ LV+S+ AV + +R
Sbjct: 182 VYDILRRGKLVLSKAAVEALEER 204
>gi|337269080|ref|YP_004613135.1| 50S ribosomal protein L4/L1e [Mesorhizobium opportunistum WSM2075]
gi|336029390|gb|AEH89041.1| ribosomal protein L4/L1e [Mesorhizobium opportunistum WSM2075]
Length = 206
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 89/203 (43%), Positives = 130/203 (64%), Gaps = 1/203 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ +T +D G + L+ ++F + R+DI+ RVVRWQLAK+QQGTH K +E++ TG K
Sbjct: 3 LKITTLGGKDAGKVKLSEEIFGLDPREDILQRVVRWQLAKKQQGTHKAKGRAEIARTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP RSH L KKVR LGLK ALSA+A +
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLKHALSAKAKSASI 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
++ ++L++ KTK ++ + + L+ G + + KLA N+ ++VLP G+N
Sbjct: 123 IIIDELKLTEAKTKALIANFATL-GLSNALVIGGAELDQNFKLAATNIPNIDVLPIQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDR 303
VY IL+ TLV+S+ AV + +R
Sbjct: 182 VYDILRRGTLVLSKAAVEALEER 204
>gi|154245624|ref|YP_001416582.1| 50S ribosomal protein L4 [Xanthobacter autotrophicus Py2]
gi|226731446|sp|A7IFY2.1|RL4_XANP2 RecName: Full=50S ribosomal protein L4
gi|154159709|gb|ABS66925.1| ribosomal protein L4/L1e [Xanthobacter autotrophicus Py2]
Length = 206
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 90/204 (44%), Positives = 130/204 (63%), Gaps = 1/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I V + G + L+ ++F + R DI+HR V WQL++RQ GTH TK SE++ T KK
Sbjct: 3 ITVKTLDGIEAGSVTLSDEIFGLEPRADILHRCVTWQLSRRQAGTHRTKGRSEINRTSKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTG ARHG PQFRGG GP RSHAI L KKVR L LK ALS++A ++
Sbjct: 63 MYKQKGTGNARHGAASAPQFRGGGRAFGPVVRSHAIDLPKKVRALALKHALSSKAKAAQI 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + + + KTK + ++ ++ + VL+ DG + + + LA +NL YV+VLP G+N
Sbjct: 123 IVLDKVSLDDPKTKALKEHFAKL-GLESVLIVDGAQVEQNVALAARNLPYVDVLPIQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL+ DTLV+++ AV+ + R
Sbjct: 182 VYDILRRDTLVLTKAAVDALEARF 205
>gi|338707689|ref|YP_004661890.1| 50S ribosomal protein L4/L1e [Zymomonas mobilis subsp. pomaceae
ATCC 29192]
gi|336294493|gb|AEI37600.1| ribosomal protein L4/L1e [Zymomonas mobilis subsp. pomaceae ATCC
29192]
Length = 208
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 93/205 (45%), Positives = 128/205 (62%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + KG + L VFDV R DI+HRVV WQL KR+ T +T+ ++V+ TGKK
Sbjct: 3 VEVQSLDASQKGSIELNDAVFDVEPRADILHRVVTWQLEKRRAPTRATRERADVARTGKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
RQKG G ARHG R P F GG HG + R LNKK+R LGL++ALS++A G L
Sbjct: 63 FGRQKGGGTARHGDRRAPIFIGGGKAHGARARVFNPSLNKKLRTLGLRMALSSKAKAGAL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + L+V KTKF+ + KVL+ DG ++E A+ NL ++VLP++G N
Sbjct: 123 IVVDALDVDEAKTKFLATQIKSLGFGPKVLVVDGETVNENFARASSNLVGLDVLPAIGAN 182
Query: 281 VYSILQHDTLVMSRDAVNKIVDRMH 305
VY IL+HDTLV++R AV K+ R++
Sbjct: 183 VYDILKHDTLVLTRAAVEKLEARLN 207
>gi|398353244|ref|YP_006398708.1| 50S ribosomal protein L4 [Sinorhizobium fredii USDA 257]
gi|390128570|gb|AFL51951.1| 50S ribosomal protein L4 [Sinorhizobium fredii USDA 257]
Length = 206
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 95/203 (46%), Positives = 125/203 (61%), Gaps = 1/203 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V +D G + L+ +F + R+DII RV+RWQLAKRQQGTH K +EVS TG K
Sbjct: 3 LTVKTLEGKDAGKVSLSDAIFGLEPREDIIARVIRWQLAKRQQGTHKAKGRAEVSRTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP RSH L KKVR LGL+ ALSA+ ++
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLRHALSAKLKAEEI 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V +DL KTK + + + T L+ G I KLA QN+ V+VLP G+N
Sbjct: 123 IVLDDLVANEAKTKTLAGAFASLGLT-NALIIGGAEIENNFKLAAQNIPNVDVLPVQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDR 303
VY IL+ LV+S+ AV + +R
Sbjct: 182 VYDILRRGKLVLSKAAVEALEER 204
>gi|433775497|ref|YP_007305964.1| 50S ribosomal protein L4, bacterial/organelle [Mesorhizobium
australicum WSM2073]
gi|433667512|gb|AGB46588.1| 50S ribosomal protein L4, bacterial/organelle [Mesorhizobium
australicum WSM2073]
Length = 206
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 90/203 (44%), Positives = 131/203 (64%), Gaps = 1/203 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ +T +D G + L+ +F + R+DI+ RVVRWQLAK+QQGTH K +E++ TG K
Sbjct: 3 LKITTLGGKDAGKVELSDGIFGLDPREDILQRVVRWQLAKKQQGTHKAKGRAEIARTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP RSH +L KKVR LGLK ALSA+A +
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHELPKKVRALGLKHALSAKAKSASI 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
++ ++L++ KTK ++ + + T L+ G + + KLA N+ ++VLP G+N
Sbjct: 123 IIIDELKLTEAKTKALIANFATLGLT-NALVIGGAELDKNFKLAATNIPNIDVLPIQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDR 303
VY IL+ TLV+S+ AV + +R
Sbjct: 182 VYDILRRGTLVLSKAAVEALEER 204
>gi|301118172|ref|XP_002906814.1| 50S ribosomal protein L4 [Phytophthora infestans T30-4]
gi|262108163|gb|EEY66215.1| 50S ribosomal protein L4 [Phytophthora infestans T30-4]
Length = 277
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 90/197 (45%), Positives = 126/197 (63%), Gaps = 1/197 (0%)
Query: 109 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTG 168
+D G + + G+VF P R DI+ RVVRWQLA R+ GT+ TKT SEVSG+ +KPW+QKG+G
Sbjct: 80 QDLGSISMDGEVFGAPDRVDILQRVVRWQLACRRAGTNKTKTRSEVSGSTRKPWKQKGSG 139
Query: 169 RARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEV 228
RAR G +R PQ+RGG +HGP R + L KKVR +GL++ALS + EGKL + + L+V
Sbjct: 140 RARVGDIRAPQWRGGYRVHGPVLRDFSYSLPKKVRAMGLRVALSTKLREGKLAIVDSLDV 199
Query: 229 PSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHD 288
KTK + L G + LAT+N+ +V+ L +NVYSILQ D
Sbjct: 200 DITKTKDMKKLLGG-RGWDHALFVGGEEVESSFVLATRNIPHVDTLAQNKINVYSILQKD 258
Query: 289 TLVMSRDAVNKIVDRMH 305
L++++DAV + +R+H
Sbjct: 259 LLIITKDAVKYLEERLH 275
>gi|337286817|ref|YP_004626290.1| 50S ribosomal protein L4/L1e [Thermodesulfatator indicus DSM 15286]
gi|335359645|gb|AEH45326.1| ribosomal protein L4/L1e [Thermodesulfatator indicus DSM 15286]
Length = 207
Score = 173 bits (439), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 94/205 (45%), Positives = 131/205 (63%), Gaps = 4/205 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N E + L D+F+VP++ ++H+VVRWQ+A+ + GT TKT EV G G+K
Sbjct: 4 VAVVNNKKEKVDEVNLREDIFNVPVKVGLLHQVVRWQMARWRAGTACTKTRGEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R P + GG + GPKPR + K+NKK RRL LK+ALSARA EGKL
Sbjct: 64 PWRQKGTGRARQGSIRAPHWVGGGVVFGPKPRDYEFKVNKKERRLALKMALSARAQEGKL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQM-ENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGL 279
LV +D + KTK V + + V+L + + EK + +NL V VL GL
Sbjct: 124 LVVDDFGLDEIKTKKFVEFLKGLGAEDALVVLPERDEVVEK---SARNLPTVKVLTVDGL 180
Query: 280 NVYSILQHDTLVMSRDAVNKIVDRM 304
NVY IL ++ L++ R+A+ KI +R+
Sbjct: 181 NVYDILDYEYLIIKREALPKIEERL 205
>gi|77462260|ref|YP_351764.1| 50S ribosomal protein L4 [Rhodobacter sphaeroides 2.4.1]
gi|126461136|ref|YP_001042250.1| 50S ribosomal protein L4 [Rhodobacter sphaeroides ATCC 17029]
gi|221638114|ref|YP_002524376.1| 50S ribosomal protein L4 [Rhodobacter sphaeroides KD131]
gi|332560141|ref|ZP_08414463.1| 50S ribosomal protein L4 [Rhodobacter sphaeroides WS8N]
gi|429207693|ref|ZP_19198949.1| LSU ribosomal protein L4p (L1e) [Rhodobacter sp. AKP1]
gi|109893632|sp|Q3J5S1.1|RL4_RHOS4 RecName: Full=50S ribosomal protein L4
gi|166199853|sp|A3PGL2.1|RL4_RHOS1 RecName: Full=50S ribosomal protein L4
gi|254803750|sp|B9KL92.1|RL4_RHOSK RecName: Full=50S ribosomal protein L4
gi|77386678|gb|ABA77863.1| LSU ribosomal protein L4P [Rhodobacter sphaeroides 2.4.1]
gi|126102800|gb|ABN75478.1| LSU ribosomal protein L4P [Rhodobacter sphaeroides ATCC 17029]
gi|221158895|gb|ACL99874.1| 50S ribosomal protein L4 [Rhodobacter sphaeroides KD131]
gi|332277853|gb|EGJ23168.1| 50S ribosomal protein L4 [Rhodobacter sphaeroides WS8N]
gi|428189086|gb|EKX57642.1| LSU ribosomal protein L4p (L1e) [Rhodobacter sp. AKP1]
Length = 206
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/193 (48%), Positives = 122/193 (63%), Gaps = 1/193 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +F + R DI+HRVVRWQ AK Q GTHS S+VS + KK +RQKGTG AR
Sbjct: 14 GSIELDDAIFGLEPRADILHRVVRWQRAKAQAGTHSVLGKSDVSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG+ + P FR G GP PRSHA LNKK R LGLK ALS++A G L+V ED+ +
Sbjct: 74 HGSKKAPIFRHGGVYKGPTPRSHAHDLNKKFRALGLKHALSSKATTGNLIVLEDIALAEG 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KT + ++ K+VL+ DG I+E A +NL V+VLPS+G NVY IL+ DTLV
Sbjct: 134 KTAMLAKAVKEL-GWKRVLVIDGADINENFAKAARNLEGVDVLPSIGANVYDILKRDTLV 192
Query: 292 MSRDAVNKIVDRM 304
+++ V + R+
Sbjct: 193 ITKAGVEALEARL 205
>gi|58038854|ref|YP_190818.1| 50S ribosomal protein L4 [Gluconobacter oxydans 621H]
gi|81557183|sp|Q5FTY4.1|RL4_GLUOX RecName: Full=50S ribosomal protein L4
gi|58001268|gb|AAW60162.1| LSU ribosomal protein L4P [Gluconobacter oxydans 621H]
Length = 204
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 95/202 (47%), Positives = 123/202 (60%), Gaps = 3/202 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+ N G + L ++F V R DI+ RVV WQLAKR+ GTH TK + E+SGT KKP+
Sbjct: 5 IKTLDNGSAGSVALPEEIFAVTPRSDIMARVVHWQLAKRRAGTHRTKGMGEISGTTKKPY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQKGTG AR G+LR PQFR G +HGP R H L KKVRRLGL ALS +AAEGKL+V
Sbjct: 65 RQKGTGSARQGSLRAPQFRTGGVVHGPVVRDHGYDLPKKVRRLGLICALSQKAAEGKLIV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
D KT+ + T L+ D G + E+ A NL ++VLP++G NVY
Sbjct: 125 L-DAANGVTKTREAAAKIKALGWT-SALIVD-GAVDEQFARAIANLPKIDVLPTIGANVY 181
Query: 283 SILQHDTLVMSRDAVNKIVDRM 304
IL HD LV++R + + +R+
Sbjct: 182 DILNHDVLVITRAGLEGLKERL 203
>gi|403743621|ref|ZP_10953173.1| 50S ribosomal protein L4/L1e [Alicyclobacillus hesperidum
URH17-3-68]
gi|403122651|gb|EJY56856.1| 50S ribosomal protein L4/L1e [Alicyclobacillus hesperidum
URH17-3-68]
Length = 206
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 88/200 (44%), Positives = 131/200 (65%), Gaps = 2/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N + + L+ +F P+R D++H+VV LA R+ GTH K + VSG G+K
Sbjct: 4 VAVLNTAGQQVSELQLSDKIFGAPVRLDLMHQVVLQYLAARRAGTHKVKNRAAVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ++GG + GP PRS+A + KKVRRL L ALS++ AEGK+
Sbjct: 64 PWRQKGTGRARQGSIRAPQWKGGGVVFGPTPRSYAFSVPKKVRRLALYSALSSKVAEGKI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V +DL++ KTK +V+ + N K L+ DG E L +++N+ V + + G+N
Sbjct: 124 IVLDDLQLNQPKTKEMVSVLKNL-NVGKALIVDGEK-KEPLYRSSRNIPGVKYMDAAGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY +L+HD LV+++DAV K+
Sbjct: 182 VYELLRHDHLVLTKDAVAKV 201
>gi|146278567|ref|YP_001168726.1| 50S ribosomal protein L4 [Rhodobacter sphaeroides ATCC 17025]
gi|166199854|sp|A4WVK7.1|RL4_RHOS5 RecName: Full=50S ribosomal protein L4
gi|145556808|gb|ABP71421.1| LSU ribosomal protein L4P [Rhodobacter sphaeroides ATCC 17025]
Length = 206
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 92/193 (47%), Positives = 122/193 (63%), Gaps = 1/193 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +F + R DI+HRVVRWQ AK Q GTHS S+VS + KK +RQKGTG AR
Sbjct: 14 GSIELDDAIFGLEPRADILHRVVRWQRAKAQAGTHSVLGKSDVSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG+ + P FR G GP PRSHA LNKK R LGLK ALS++A G L+V ED+ +
Sbjct: 74 HGSKKAPIFRHGGVYKGPTPRSHAHDLNKKFRALGLKHALSSKATTGNLIVIEDIAMSEA 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KT + ++ K+VL+ DG I+E A +NL ++VLPS+G NVY IL+ DTLV
Sbjct: 134 KTALLAKAVKEL-GWKRVLVIDGADINENFAKAARNLEGIDVLPSIGANVYDILKRDTLV 192
Query: 292 MSRDAVNKIVDRM 304
+++ V + R+
Sbjct: 193 ITKAGVEALEARL 205
>gi|414162148|ref|ZP_11418395.1| 50S ribosomal protein L4 [Afipia felis ATCC 53690]
gi|410879928|gb|EKS27768.1| 50S ribosomal protein L4 [Afipia felis ATCC 53690]
Length = 206
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/206 (45%), Positives = 132/206 (64%), Gaps = 1/206 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + VT + G + L+ ++F + RKDII RVV WQLAKRQ GTH TK +EV TG
Sbjct: 1 MELNVTTLEGKAAGSVSLSDEIFGLEPRKDIIQRVVNWQLAKRQAGTHKTKGRAEVWRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP RSHA L KKVR LGL+ ALSA+A +G
Sbjct: 61 KKMYKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHAHDLPKKVRALGLRHALSAKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
L+V ++ E+ KTK ++ +++ + T L+ DG + A +N+ +++VLP G
Sbjct: 121 SLVVLDNAELKDAKTKALIGHFSGLGLT-SALIVDGAEVSNGFAQAARNIPHIDVLPIQG 179
Query: 279 LNVYSILQHDTLVMSRDAVNKIVDRM 304
+NVY IL+ LV+++ AV+ + R
Sbjct: 180 INVYDILRRQKLVLTKAAVDALEARF 205
>gi|126724862|ref|ZP_01740705.1| 50S ribosomal protein L4 [Rhodobacterales bacterium HTCC2150]
gi|126706026|gb|EBA05116.1| 50S ribosomal protein L4 [Rhodobacteraceae bacterium HTCC2150]
Length = 206
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 92/204 (45%), Positives = 126/204 (61%), Gaps = 1/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + G + LA D+F + R DI+HRVVR+QLAKRQ GTH KT SEV + KK
Sbjct: 3 LDVIKLDGKKAGSVDLAEDLFGLEARADILHRVVRYQLAKRQAGTHKVKTRSEVKYSTKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
+RQKGTG ARHG P FRGG GP PRSHA LNKK R LGL+ ALSA+A G+L
Sbjct: 63 IYRQKGTGGARHGARSAPIFRGGGVYKGPTPRSHAHDLNKKFRALGLRHALSAKAGAGQL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V ++ V KT + ++ K+ L+ DG ++ A+ N+ ++VLPS+G N
Sbjct: 123 VVLDEAVVADGKTGVLAKMVKEL-GWKRALVIDGAEVNANFAQASANIDGLDVLPSMGAN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL+ DTLV+++ + + R+
Sbjct: 182 VYDILKRDTLVVTKAGLEALEARL 205
>gi|407788310|ref|ZP_11135442.1| 50S ribosomal protein L4 [Celeribacter baekdonensis B30]
gi|407197591|gb|EKE67645.1| 50S ribosomal protein L4 [Celeribacter baekdonensis B30]
Length = 206
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 91/193 (47%), Positives = 121/193 (62%), Gaps = 1/193 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +F + R DI+HRVVRWQ Q GTH KT SEVS + KK +RQKGTG AR
Sbjct: 14 GTLDLDEALFGLEPRADILHRVVRWQRNNAQAGTHKVKTRSEVSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG+ + P FR G GP PRSH +L KK R+LGLK ALSA+A G L++ ED ++
Sbjct: 74 HGSRKAPIFRKGGIYKGPTPRSHGHELTKKFRKLGLKHALSAKAGSGNLVILEDAKLAEA 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KT F+ + + K+VL+ DG I K A N+ V++LP++G NVY IL+ DTLV
Sbjct: 134 KTAFLAKAIKE-QGWKRVLIIDGAEIDANFKAAAANIAGVDILPTMGANVYDILKRDTLV 192
Query: 292 MSRDAVNKIVDRM 304
++R AV + R+
Sbjct: 193 LTRSAVEALEARL 205
>gi|338975038|ref|ZP_08630393.1| LSU ribosomal protein L4p [Bradyrhizobiaceae bacterium SG-6C]
gi|414167350|ref|ZP_11423579.1| 50S ribosomal protein L4 [Afipia clevelandensis ATCC 49720]
gi|338231637|gb|EGP06772.1| LSU ribosomal protein L4p [Bradyrhizobiaceae bacterium SG-6C]
gi|410891167|gb|EKS38965.1| 50S ribosomal protein L4 [Afipia clevelandensis ATCC 49720]
Length = 206
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/206 (44%), Positives = 133/206 (64%), Gaps = 1/206 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + VT + G + L+ ++F + RKD+I RVV WQLAKRQ GTH K +EV TG
Sbjct: 1 MELKVTTLEGKAVGSVQLSDEIFGLEPRKDLIQRVVNWQLAKRQAGTHKAKGRAEVWRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP RSHA L KKVR LGLK ALSA+A +G
Sbjct: 61 KKMYKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHAYDLPKKVRALGLKHALSAKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
L+V E+ ++ KTK ++ +++ +E T L+ DG ++ A +N+ +++VLP G
Sbjct: 121 GLIVIENADLKDAKTKALLGHFSGLEIT-NALIVDGAEVNNGFAQAARNIPHIDVLPIQG 179
Query: 279 LNVYSILQHDTLVMSRDAVNKIVDRM 304
+NVY IL+ LV+++ A++ + R
Sbjct: 180 INVYDILRRQKLVLTKAALDALEARF 205
>gi|13470552|ref|NP_102121.1| 50S ribosomal protein L4 [Mesorhizobium loti MAFF303099]
gi|46577286|sp|Q98N56.1|RL4_RHILO RecName: Full=50S ribosomal protein L4
gi|14021294|dbj|BAB47907.1| 50S ribosomal protein L4 [Mesorhizobium loti MAFF303099]
Length = 206
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 89/203 (43%), Positives = 129/203 (63%), Gaps = 1/203 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ +T +D G + L+ ++F + R+DI+ RVVRWQLAK+QQGTH K +E++ TG K
Sbjct: 3 LKITTLGGKDAGKVKLSEEIFGLDPREDILQRVVRWQLAKKQQGTHKAKGRAEIARTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP RSH L K VR LGLK ALSA+A +
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKNVRALGLKHALSAKAKSASI 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V ++L++ KTK ++ + + L+ G + + KLA N+ ++VLP G+N
Sbjct: 123 IVIDELKLTEAKTKALIANFATL-GLSNALVIGGAELDKNFKLAATNIPNIDVLPIQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDR 303
VY IL+ TLV+S+ AV + +R
Sbjct: 182 VYDILRRGTLVLSKAAVEALEER 204
>gi|209884814|ref|YP_002288671.1| 50S ribosomal protein L4 [Oligotropha carboxidovorans OM5]
gi|337741542|ref|YP_004633270.1| 50S ribosomal protein L4 [Oligotropha carboxidovorans OM5]
gi|386030558|ref|YP_005951333.1| 50S ribosomal protein L4 [Oligotropha carboxidovorans OM4]
gi|226730700|sp|B6JET4.1|RL4_OLICO RecName: Full=50S ribosomal protein L4
gi|209873010|gb|ACI92806.1| ribosomal protein L4/L1 family [Oligotropha carboxidovorans OM5]
gi|336095626|gb|AEI03452.1| 50S ribosomal protein L4 [Oligotropha carboxidovorans OM4]
gi|336099206|gb|AEI07029.1| 50S ribosomal protein L4 [Oligotropha carboxidovorans OM5]
Length = 206
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/206 (44%), Positives = 132/206 (64%), Gaps = 1/206 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + VT + G + L+ +F + R DII RVV WQLAKRQ GTH TK +E++ TG
Sbjct: 1 MELNVTTLEGKAAGSVNLSDTIFGLEPRTDIIQRVVNWQLAKRQAGTHKTKGRAEIARTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP RSHA L KKVR LGL+ ALSA+A +G
Sbjct: 61 KKMYKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHAYDLPKKVRALGLRHALSAKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
L+V ++ E+ KTK ++ +++ + T L+ DG ++ A +N+ +++VLP G
Sbjct: 121 SLVVLDNAELKDAKTKALIGHFSGLGLT-SALIVDGAEVNNGFAQAARNIPHIDVLPIQG 179
Query: 279 LNVYSILQHDTLVMSRDAVNKIVDRM 304
+NVY IL+ LV+++ AV+ + R
Sbjct: 180 INVYDILRRQKLVLTKAAVDALEARF 205
>gi|402771843|ref|YP_006591380.1| 50S ribosomal protein L4 [Methylocystis sp. SC2]
gi|401773863|emb|CCJ06729.1| 50S ribosomal protein L4 [Methylocystis sp. SC2]
Length = 206
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/206 (43%), Positives = 135/206 (65%), Gaps = 5/206 (2%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I VT+F + G + L+ +VF + RKD+I R++RWQLAKR+ GTH+ K +E++ +GKK
Sbjct: 3 IDVTSFDGQAAGSIELSDEVFGLEPRKDLIFRMIRWQLAKRRAGTHAVKNRAEIARSGKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
+QKGTG ARHG+ R PQFRGG GP RSHA L KKVR+L LK ALSA+A +G +
Sbjct: 63 LHKQKGTGGARHGSARAPQFRGGGRAFGPVVRSHAHDLTKKVRQLALKHALSAKAKDGGI 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQ--MENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
+V+E E+ +TK + + + + +EN ++ GG LA +N+ +++LP G
Sbjct: 123 IVWESAELAEPRTKLLASSFAKTGLENA---IIIVGGAPQHNFVLAARNIPKIDILPVEG 179
Query: 279 LNVYSILQHDTLVMSRDAVNKIVDRM 304
+NVY IL+ + LV++R AV+ + R+
Sbjct: 180 VNVYDILRREKLVLTRAAVDALEARL 205
>gi|162149173|ref|YP_001603634.1| 50S ribosomal protein L4 [Gluconacetobacter diazotrophicus PAl 5]
gi|209545083|ref|YP_002277312.1| 50S ribosomal protein L4 [Gluconacetobacter diazotrophicus PAl 5]
gi|189029506|sp|A9H3R2.1|RL4_GLUDA RecName: Full=50S ribosomal protein L4
gi|161787750|emb|CAP57346.1| 50S ribosomal protein L4 [Gluconacetobacter diazotrophicus PAl 5]
gi|209532760|gb|ACI52697.1| ribosomal protein L4/L1e [Gluconacetobacter diazotrophicus PAl 5]
Length = 204
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/202 (46%), Positives = 120/202 (59%), Gaps = 3/202 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+ N G VL ++F V R DI+ RVV WQLAKR+ GTH K + EVSGT KKP+
Sbjct: 5 IKTLDNGSAGTAVLPDEIFGVTPRADIMARVVHWQLAKRRAGTHKVKGMGEVSGTTKKPY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQKGTG AR G+LR PQ+R G +HGP R H L KKVRRLGL ALS +AAEGKL+V
Sbjct: 65 RQKGTGSARQGSLRAPQYRTGGAVHGPVVRDHGYDLPKKVRRLGLISALSQKAAEGKLVV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
D S +T + + K L+ D + E A +NL ++ LP++G NVY
Sbjct: 125 L-DAATASGRTSELAAKVKAL-GWKSALIVD-ATVEENFGRAARNLPKIDALPTIGANVY 181
Query: 283 SILQHDTLVMSRDAVNKIVDRM 304
IL HD L ++R V + +R+
Sbjct: 182 DILNHDVLAITRAGVEGLKERL 203
>gi|410943569|ref|ZP_11375310.1| 50S ribosomal protein L4 [Gluconobacter frateurii NBRC 101659]
Length = 204
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 94/202 (46%), Positives = 124/202 (61%), Gaps = 3/202 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+ N G + L ++F V R DI+ RVV WQLAKR+ GTH TK + E+SGT KKP+
Sbjct: 5 IKTLDNGSAGSVALPEEIFAVSPRADIMARVVHWQLAKRRAGTHRTKGMGEISGTTKKPF 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQKGTG AR G+LR PQFR G +HGP R H L KKVRRLGL ALS +AA+GKL+V
Sbjct: 65 RQKGTGSARQGSLRAPQFRTGGVVHGPVVRDHGYDLPKKVRRLGLISALSQKAADGKLVV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
+ S KT+ V + L+ D G + E+ A NL ++VLP++G NVY
Sbjct: 125 LDTANGVS-KTREAVAKLKAL-GWSSALIVD-GAVDEQFARAVANLPKIDVLPTIGANVY 181
Query: 283 SILQHDTLVMSRDAVNKIVDRM 304
IL HD LV++R + + +R+
Sbjct: 182 DILNHDVLVITRAGLEGLKERL 203
>gi|357032625|ref|ZP_09094560.1| 50S ribosomal protein L4 [Gluconobacter morbifer G707]
gi|356413616|gb|EHH67268.1| 50S ribosomal protein L4 [Gluconobacter morbifer G707]
Length = 204
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 93/202 (46%), Positives = 122/202 (60%), Gaps = 3/202 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+ N G + L ++F V R D++ RVV WQLAKR+ GTH TK + E+SGT KKP+
Sbjct: 5 IKTLDNGSAGTVALPEEIFAVSPRADLMARVVHWQLAKRRAGTHRTKGMGEISGTTKKPY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQKGTG AR G+LR PQFR G +HGP R H L KKVRRLGL ALS +A EGKL+V
Sbjct: 65 RQKGTGSARQGSLRAPQFRTGGVVHGPVVRDHGYDLPKKVRRLGLISALSQKATEGKLIV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
E + KT+ + L+ D G + E+ A NL ++VLP++G NVY
Sbjct: 125 LETASGVT-KTREAAAKLKAL-GWSSALIVD-GAVDEQFARAVANLPKIDVLPTIGANVY 181
Query: 283 SILQHDTLVMSRDAVNKIVDRM 304
IL HD LV++R + I +R+
Sbjct: 182 DILNHDVLVITRAGLEGIKERL 203
>gi|323136087|ref|ZP_08071170.1| ribosomal protein L4/L1e [Methylocystis sp. ATCC 49242]
gi|322399178|gb|EFY01697.1| ribosomal protein L4/L1e [Methylocystis sp. ATCC 49242]
Length = 206
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 88/204 (43%), Positives = 132/204 (64%), Gaps = 1/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I VT+F + G + L+ DVF + R D+I R++RWQLAKR+ GTH+ K ++++ TGKK
Sbjct: 3 IDVTSFDGQAAGSIELSDDVFGLEPRTDLIFRMIRWQLAKRRAGTHAVKNRADIARTGKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTG ARHG+ R PQFRGG GP+ RSH L KKVR+L LK ALSA+A +G +
Sbjct: 63 MYKQKGTGGARHGSGRAPQFRGGGRAFGPQVRSHEHDLPKKVRQLALKHALSAKAKDGGI 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V+E E+ KTK + + + +++ GG LA +N+ ++VLP G+N
Sbjct: 123 IVWEKAELAEPKTKILAGGFAKSGLNNAIIIV-GGAPQANFALAARNIPQIDVLPVEGVN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY I++ + LV++R AV+ + R+
Sbjct: 182 VYDIIRREKLVLTRAAVDALEARL 205
>gi|103488294|ref|YP_617855.1| 50S ribosomal protein L4 [Sphingopyxis alaskensis RB2256]
gi|123252916|sp|Q1GPA0.1|RL4_SPHAL RecName: Full=50S ribosomal protein L4
gi|98978371|gb|ABF54522.1| LSU ribosomal protein L4P [Sphingopyxis alaskensis RB2256]
Length = 208
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 87/187 (46%), Positives = 119/187 (63%)
Query: 119 DVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGP 178
DVF + R DI+HRVV WQL KR+ + + S+V+ TGKK RQKG G ARHG R P
Sbjct: 21 DVFGLDARADILHRVVAWQLEKRRGPARAARERSDVARTGKKFGRQKGGGTARHGDRRAP 80
Query: 179 QFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVN 238
F GG HGP+ R+ LNKK+R LGLK+ALS +A GKL+V + LE+ KTK +
Sbjct: 81 IFIGGGKAHGPRARTFGHSLNKKIRTLGLKMALSDKAKGGKLVVIDTLELKDAKTKALAG 140
Query: 239 YYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVN 298
+++ K+ L DG +HE +A+ NL V+ LP++G NVY I++ DTLV++R AV
Sbjct: 141 KLGKLDLGKRALFIDGDAVHESFAMASANLIGVDALPAIGANVYDIVRADTLVLTRAAVE 200
Query: 299 KIVDRMH 305
K+ R +
Sbjct: 201 KLEARCN 207
>gi|430003421|emb|CCF19208.1| 50S ribosomal subunit protein L4 [Rhizobium sp.]
Length = 206
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 94/201 (46%), Positives = 125/201 (62%), Gaps = 1/201 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V +D G + L+ ++F + R+DI+ R+VRWQLAK+QQGTH K SEVS TG K +
Sbjct: 5 VKTLEGKDAGKVSLSDEIFGLDPREDILARMVRWQLAKKQQGTHKIKNRSEVSRTGAKMY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
+QKGTGRARH + R PQFRGG HGP RSHA L KKVR L L+ ALSA+ L+V
Sbjct: 65 KQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPKKVRALALRHALSAKLKAEDLIV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
++L KTK +V + + T L+ G + KLA QN+ V+VLP G+NVY
Sbjct: 125 IDNLVAAEAKTKALVGSFASLGLT-NALIIGGSELDNNFKLAAQNIPNVDVLPVQGINVY 183
Query: 283 SILQHDTLVMSRDAVNKIVDR 303
IL+ LV+S+ AV + +R
Sbjct: 184 DILRRGKLVLSKAAVEALEER 204
>gi|357977005|ref|ZP_09140976.1| 50S ribosomal protein L4 [Sphingomonas sp. KC8]
Length = 208
Score = 170 bits (431), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 91/205 (44%), Positives = 126/205 (61%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + G + LA +VF + R DI+HRVV WQL KR+ T+ S+V+ +GKK
Sbjct: 3 VKVQTLDAKASGDIELADEVFGLDPRADILHRVVTWQLEKRRGTARGTRERSDVARSGKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
RQKG G ARHG R P F GG HG + R LNKKVR LGLK+ALSA+A +G L
Sbjct: 63 FGRQKGGGTARHGDRRAPVFIGGGKAHGARVRDFNPSLNKKVRTLGLKMALSAKAKDGNL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
++ + L+V KTK + ++ K L+ DG ++ LA+ NL VN+LP++G N
Sbjct: 123 IIVDALDVAEGKTKVLATQLEKLGFGAKALVIDGDALNVSFALASGNLKGVNLLPAIGAN 182
Query: 281 VYSILQHDTLVMSRDAVNKIVDRMH 305
VY IL+HDTLV++R AV K+ R++
Sbjct: 183 VYDILKHDTLVLTRAAVEKLEARLN 207
>gi|414174076|ref|ZP_11428703.1| 50S ribosomal protein L4 [Afipia broomeae ATCC 49717]
gi|410890710|gb|EKS38509.1| 50S ribosomal protein L4 [Afipia broomeae ATCC 49717]
Length = 206
Score = 170 bits (431), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 91/206 (44%), Positives = 133/206 (64%), Gaps = 1/206 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + VT + G + L+ ++F + RKD+I RVV WQLAKRQ GTH K +E+ TG
Sbjct: 1 MELKVTTLEGKAAGSVQLSDEIFGLEPRKDLIQRVVNWQLAKRQAGTHKAKGRAEIWRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP RSHA L KKVR LGLK ALSA+A +G
Sbjct: 61 KKMYKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHAHDLPKKVRALGLKHALSAKAQDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
L+V E+ ++ KTK ++ +++ +E T L+ DG ++ A +N+ +++VLP G
Sbjct: 121 GLIVIENADLKDAKTKALLGHFSSLEIT-NALIIDGVEVNTGFAQAARNIPHIDVLPIQG 179
Query: 279 LNVYSILQHDTLVMSRDAVNKIVDRM 304
+NVY IL+ LV+++ A++ + R
Sbjct: 180 INVYDILRRQKLVLTKAALDALEARF 205
>gi|58584598|ref|YP_198171.1| 50S ribosomal protein L4 [Wolbachia endosymbiont strain TRS of
Brugia malayi]
gi|75497927|sp|Q5GSU5.1|RL4_WOLTR RecName: Full=50S ribosomal protein L4
gi|58418914|gb|AAW70929.1| Ribosomal protein L4 [Wolbachia endosymbiont strain TRS of Brugia
malayi]
Length = 204
Score = 170 bits (431), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 86/202 (42%), Positives = 125/202 (61%), Gaps = 3/202 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+ N N D G L +F V + I+H +VRWQLAKR+ GTH K IS+VSGT KP+
Sbjct: 5 LVNLSNNDVGTTQLNPLIFSVEQKLSILHDIVRWQLAKRRAGTHKVKGISDVSGTTAKPY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
QK TGRAR G+LR PQFRGG + GP RSHA LNKKVR+ GLK+ALS + ++++
Sbjct: 65 SQKRTGRARQGSLRSPQFRGGGVIFGPIVRSHAYSLNKKVRKFGLKVALSLKYLNNQVII 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
+L + KT + Y + + +++ D + L A +NLHYVN++ +GLNV+
Sbjct: 125 LNNLNINVKKTSEMCKYIQNFKFSSFLIVGD---YEDSLLRAARNLHYVNLIKPIGLNVF 181
Query: 283 SILQHDTLVMSRDAVNKIVDRM 304
IL H+ ++++ DA+ + R+
Sbjct: 182 DILNHECIMLTSDALRYLEGRL 203
>gi|335036156|ref|ZP_08529483.1| 50S ribosomal protein L4 [Agrobacterium sp. ATCC 31749]
gi|333792047|gb|EGL63417.1| 50S ribosomal protein L4 [Agrobacterium sp. ATCC 31749]
Length = 206
Score = 170 bits (431), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 93/205 (45%), Positives = 128/205 (62%), Gaps = 1/205 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + V +D G + L+ ++F + R+DI+ R+VRWQLAK+QQGTH TK SEVS TG
Sbjct: 1 MELNVKTLEGKDAGKVSLSDEIFGLDPRQDILARMVRWQLAKKQQGTHKTKNRSEVSRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
K ++QKGTGRARH + R PQFRGG HGP RSHA L KKVR L L+ ALSA+
Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPKKVRALALRHALSAKLKAE 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
+L++ + L KTK ++ + + T L+ G + KLA QN+ V+VLP G
Sbjct: 121 ELIIIDQLVASEAKTKALLGSFASLGLT-NALVIGGAELDGNFKLAAQNIPNVDVLPVQG 179
Query: 279 LNVYSILQHDTLVMSRDAVNKIVDR 303
+NVY IL+ LV+S+ AV + +R
Sbjct: 180 INVYDILRRGKLVLSKAAVEALEER 204
>gi|395779755|ref|ZP_10460224.1| 50S ribosomal protein L4 [Bartonella washoensis 085-0475]
gi|395420130|gb|EJF86415.1| 50S ribosomal protein L4 [Bartonella washoensis 085-0475]
Length = 206
Score = 170 bits (431), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 94/206 (45%), Positives = 130/206 (63%), Gaps = 3/206 (1%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
DLV V + G + ++ VF + R+DI+ RVVRWQLA+RQQGTH ++ S+VS T
Sbjct: 2 DLV--VKTLEGNEAGKLKVSEGVFGLVPREDILQRVVRWQLARRQQGTHQSQGRSDVSRT 59
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G K ++QKGTGRARH + R PQFRGG HGP RSHA L KK+R LGL++ALSA+
Sbjct: 60 GAKMFKQKGTGRARHSSARAPQFRGGGKAHGPVVRSHAHDLPKKIRALGLRLALSAKLKA 119
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
L+V ++L V KTK +V+ ++++ K LL G I A N+ ++VLP
Sbjct: 120 NDLIVVDELNVKDAKTKMLVSSFSKL-GFKNALLIGGKEIDVNFSRAASNIPNIDVLPIQ 178
Query: 278 GLNVYSILQHDTLVMSRDAVNKIVDR 303
G+NVY IL+ LV+S+ AV + +R
Sbjct: 179 GINVYDILRRSKLVLSKAAVEALEER 204
>gi|15889241|ref|NP_354922.1| 50S ribosomal protein L4 [Agrobacterium fabrum str. C58]
gi|46576833|sp|Q8UE19.1|RL4_AGRT5 RecName: Full=50S ribosomal protein L4
gi|15157068|gb|AAK87707.1| 50S ribosomal protein L4 [Agrobacterium fabrum str. C58]
Length = 206
Score = 170 bits (431), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 93/205 (45%), Positives = 128/205 (62%), Gaps = 1/205 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + V +D G + L+ ++F + R+DI+ R+VRWQLAK+QQGTH TK SEVS TG
Sbjct: 1 MELNVKTLEGKDAGKVSLSDEIFGLDPRQDILARMVRWQLAKKQQGTHKTKNRSEVSRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
K ++QKGTGRARH + R PQFRGG HGP RSHA L KKVR L L+ ALSA+
Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPKKVRALALRHALSAKLKAE 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
+L++ + L KTK ++ + + T L+ G + KLA QN+ V+VLP G
Sbjct: 121 ELIIVDQLVASEAKTKALLGSFASLGLT-NALVIGGAELDGNFKLAAQNIPNVDVLPVQG 179
Query: 279 LNVYSILQHDTLVMSRDAVNKIVDR 303
+NVY IL+ LV+S+ AV + +R
Sbjct: 180 INVYDILRRGKLVLSKAAVEALEER 204
>gi|414342981|ref|YP_006984502.1| protein RplD [Gluconobacter oxydans H24]
gi|411028316|gb|AFW01571.1| RplD [Gluconobacter oxydans H24]
gi|453330316|dbj|GAC87544.1| 50S ribosomal protein L4 [Gluconobacter thailandicus NBRC 3255]
Length = 204
Score = 170 bits (430), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 93/202 (46%), Positives = 123/202 (60%), Gaps = 3/202 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+ N G + L ++F V R DI+ RVV WQLAKR+ GTH TK + E+SGT KKP+
Sbjct: 5 IKTLDNGSAGSVALPEEIFAVSPRADIMARVVHWQLAKRRAGTHRTKGMGEISGTTKKPF 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQKGTG AR G+LR PQFR G +HGP R H L KKVRRLGL ALS +AA+GKL+V
Sbjct: 65 RQKGTGSARQGSLRAPQFRTGGVVHGPVVRDHGYDLPKKVRRLGLISALSQKAADGKLIV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
+ S KT+ + L+ D G + E+ A NL ++VLP++G NVY
Sbjct: 125 LDTANGVS-KTREAAAKLKAL-GWSSALIVD-GAVDEQFARAIANLPKIDVLPTIGANVY 181
Query: 283 SILQHDTLVMSRDAVNKIVDRM 304
IL HD LV++R + + +R+
Sbjct: 182 DILNHDVLVITRAGLEGLKERL 203
>gi|325293335|ref|YP_004279199.1| 50S ribosomal protein L4 [Agrobacterium sp. H13-3]
gi|418408668|ref|ZP_12981984.1| 50S ribosomal protein L4 [Agrobacterium tumefaciens 5A]
gi|325061188|gb|ADY64879.1| 50S ribosomal protein L4 [Agrobacterium sp. H13-3]
gi|358005582|gb|EHJ97908.1| 50S ribosomal protein L4 [Agrobacterium tumefaciens 5A]
Length = 206
Score = 170 bits (430), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 93/205 (45%), Positives = 128/205 (62%), Gaps = 1/205 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + V +D G + L+ ++F + R+DI+ R+VRWQLAK+QQGTH TKT +EVS TG
Sbjct: 1 MELNVKTLEGKDAGKVSLSDEIFGLDPRQDILARMVRWQLAKKQQGTHKTKTRAEVSRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
K ++QKGTGRARH + R PQFRGG HGP RSHA L KKVR L L+ ALSA+
Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPKKVRALALRHALSAKLKAE 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
L++ + L KTK ++ + + T L+ G + KLA QN+ V+VLP G
Sbjct: 121 DLIIVDQLVASEAKTKALLGSFASLGLT-NALVIGGAELDGNFKLAAQNIPNVDVLPVQG 179
Query: 279 LNVYSILQHDTLVMSRDAVNKIVDR 303
+NVY IL+ LV+S+ AV + +R
Sbjct: 180 INVYDILRRGKLVLSKAAVEALEER 204
>gi|42524374|ref|NP_969754.1| 50S ribosomal protein L4 [Bdellovibrio bacteriovorus HD100]
gi|46576695|sp|P61061.1|RL4_BDEBA RecName: Full=50S ribosomal protein L4
gi|39576583|emb|CAE80747.1| 50S ribosomal protein L4 [Bdellovibrio bacteriovorus HD100]
Length = 209
Score = 170 bits (430), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 92/203 (45%), Positives = 127/203 (62%), Gaps = 3/203 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N+ E G + LA DVF+ P++K+++H VV+WQLA R+QGTH TKT VSG GKK
Sbjct: 4 VNVLNWKKEKVGSVELAADVFETPVKKEVLHTVVQWQLAARRQGTHMTKTKGLVSGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P++QKGTG AR G+ R GG T GP+PRS+A L KKVRRLGL +ALS EGKL
Sbjct: 64 PFKQKGTGGARQGSSRSILMPGGGTAFGPQPRSYAFVLPKKVRRLGLSMALSHLQKEGKL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+ + + + +N Q KK +L D + +K A++NL P GLN
Sbjct: 124 FIVDSMASEGKTAE--LNKRLQAFGLKKAVLVD-SVVDDKFNRASKNLPTFKYFPVEGLN 180
Query: 281 VYSILQHDTLVMSRDAVNKIVDR 303
V+ +L++D V+++D+V KIVDR
Sbjct: 181 VFDLLKYDAAVITKDSVAKIVDR 203
>gi|58617355|ref|YP_196554.1| 50S ribosomal protein L4 [Ehrlichia ruminantium str. Gardel]
gi|75432695|sp|Q5FFU1.1|RL4_EHRRG RecName: Full=50S ribosomal protein L4
gi|58416967|emb|CAI28080.1| 50S ribosomal protein L4 [Ehrlichia ruminantium str. Gardel]
Length = 205
Score = 170 bits (430), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 89/204 (43%), Positives = 129/204 (63%), Gaps = 2/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N +++ G + L +F V R DI+ VV WQL+KR+ G H TKTI +VSGT K
Sbjct: 3 VNVINIESQNIGKIDLNPLIFSVNYRPDILKMVVEWQLSKRRVGAHKTKTIGDVSGTTAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQK TGRAR G+LR PQFRGG + GP RSHA LNKKVR LGLK+ALS + + KL
Sbjct: 63 PYRQKHTGRARQGSLRSPQFRGGAVIFGPVVRSHAYSLNKKVRNLGLKVALSLKNSCNKL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
L+ + ++V KT ++ + E+ + L G ++ + + +NLH V +L +G N
Sbjct: 123 LILDSIDVNFVKTAQVLRFIKNFEH--QSFLIIGKDYNKGMMYSCKNLHNVTLLKQIGTN 180
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
V+ IL+HD ++++ D V + DR+
Sbjct: 181 VFDILRHDCVILTVDTVKYLEDRL 204
>gi|299135256|ref|ZP_07028447.1| ribosomal protein L4/L1e [Afipia sp. 1NLS2]
gi|298590233|gb|EFI50437.1| ribosomal protein L4/L1e [Afipia sp. 1NLS2]
Length = 206
Score = 170 bits (430), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 92/206 (44%), Positives = 132/206 (64%), Gaps = 1/206 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + VT + G + L+ ++F + RKDII RVV WQLAKRQ GTH K +EV TG
Sbjct: 1 MELNVTTLEGKAAGSVNLSDEIFGLEPRKDIIQRVVNWQLAKRQAGTHKAKGRAEVWRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP RSHA L KKVR LGL+ ALSA+A +G
Sbjct: 61 KKMYKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHAHDLPKKVRALGLRHALSAKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
L+V ++ E+ KTK ++ +++ + T L+ DG ++ A +N+ +++VLP G
Sbjct: 121 GLVVIDNAELKDAKTKALIAHFSGLGLT-SALIVDGAEVNNGFAQAARNIPHIDVLPIQG 179
Query: 279 LNVYSILQHDTLVMSRDAVNKIVDRM 304
+NVY IL+ LV+++ AV+ + R
Sbjct: 180 INVYDILRRQKLVLTKAAVDALEARF 205
>gi|395793268|ref|ZP_10472673.1| 50S ribosomal protein L4 [Bartonella vinsonii subsp. arupensis
Pm136co]
gi|423713038|ref|ZP_17687298.1| 50S ribosomal protein L4 [Bartonella vinsonii subsp. arupensis
OK-94-513]
gi|395424664|gb|EJF90844.1| 50S ribosomal protein L4 [Bartonella vinsonii subsp. arupensis
OK-94-513]
gi|395431582|gb|EJF97600.1| 50S ribosomal protein L4 [Bartonella vinsonii subsp. arupensis
Pm136co]
Length = 207
Score = 170 bits (430), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 91/203 (44%), Positives = 127/203 (62%), Gaps = 1/203 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I V + G + ++ +F + R+DI+ RVVRWQLA+RQQGTH ++ S+VS TG K
Sbjct: 4 IVVKTLDGNEAGKLKVSEGIFGLVPREDILQRVVRWQLARRQQGTHQSQGRSDVSRTGAK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP RSHA L KKVR LG+++ALSA+ L
Sbjct: 64 MFKQKGTGRARHSSARAPQFRGGGKAHGPVFRSHACDLPKKVRALGVRLALSAKLKANDL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V +DL V KTK +V+ ++++ LL G I A N+ ++VLP G+N
Sbjct: 124 IVVDDLSVKDAKTKMLVSSFSKL-GFNNALLVGGKEIDINFSRAASNIPNIDVLPIQGIN 182
Query: 281 VYSILQHDTLVMSRDAVNKIVDR 303
VY IL+ LV+S+ AV + +R
Sbjct: 183 VYDILRRSKLVLSKAAVEALEER 205
>gi|395493809|ref|ZP_10425388.1| 50S ribosomal protein L4 [Sphingomonas sp. PAMC 26617]
gi|404254135|ref|ZP_10958103.1| 50S ribosomal protein L4 [Sphingomonas sp. PAMC 26621]
Length = 208
Score = 170 bits (430), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 88/187 (47%), Positives = 117/187 (62%)
Query: 119 DVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGP 178
+VF + R DI+HRVV WQL KR+ T+ S+V+ TGKK RQKG G ARHG R P
Sbjct: 21 EVFGLDPRADILHRVVTWQLEKRRATASGTRERSDVARTGKKFGRQKGGGTARHGDRRAP 80
Query: 179 QFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVN 238
F GG HG + R LNKKVR LGLK+ALS+ A G L+V + L V ++KTK ++
Sbjct: 81 IFVGGGKAHGQRTRDFNPGLNKKVRALGLKMALSSHAQAGTLVVMDSLAVEANKTKTLIG 140
Query: 239 YYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVN 298
++ + K L+ DG + LA NLH +NV+P+ G NVY IL+HDTLV++R AV
Sbjct: 141 SWSNIGAGKTALVIDGDMVDTSFALAAGNLHTINVMPAAGANVYDILKHDTLVLTRAAVE 200
Query: 299 KIVDRMH 305
K+ R +
Sbjct: 201 KLEARFN 207
>gi|395782719|ref|ZP_10463091.1| 50S ribosomal protein L4 [Bartonella rattimassiliensis 15908]
gi|395416597|gb|EJF82967.1| 50S ribosomal protein L4 [Bartonella rattimassiliensis 15908]
Length = 206
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/207 (43%), Positives = 132/207 (63%), Gaps = 3/207 (1%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
DLVI + + G + ++ +FD+ R+DI+ RVVRWQLA+RQQG+H ++ S+VS T
Sbjct: 2 DLVI--KTLYGNEAGKLKVSEAIFDLVPREDILQRVVRWQLARRQQGSHQSQGRSDVSRT 59
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G K ++QKGTGRARH + R PQFRGG HGP RSHA L KK+R LGL++ALSA+
Sbjct: 60 GAKMFKQKGTGRARHSSARAPQFRGGGKAHGPVVRSHAHDLPKKIRSLGLRLALSAKLKA 119
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
L++ ++L V KTK +V++++++ LL G I A N+ +++LP
Sbjct: 120 KDLIIVDELVVKDAKTKVLVSHFSKL-GLNNALLIGGKEIDINFFRAASNIPNIDILPIQ 178
Query: 278 GLNVYSILQHDTLVMSRDAVNKIVDRM 304
G+NVY IL+ LV+S+ AV + +R
Sbjct: 179 GINVYDILRRSKLVLSKAAVEALEERF 205
>gi|328543359|ref|YP_004303468.1| 50S ribosomal protein L4 [Polymorphum gilvum SL003B-26A1]
gi|326413104|gb|ADZ70167.1| 50S ribosomal protein L4 [Polymorphum gilvum SL003B-26A1]
Length = 206
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/193 (46%), Positives = 121/193 (62%), Gaps = 1/193 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + ++ ++F + R D+IHRVVRWQLAKRQ GTH K SEVSGT KK RQKG+G AR
Sbjct: 14 GSITVSDEIFGLEPRTDLIHRVVRWQLAKRQAGTHKAKGRSEVSGTTKKFVRQKGSGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG + PQFRGG GP R H L KKVR LGL ALS +A G L++ ED +
Sbjct: 74 HGNRKAPQFRGGGKAFGPVVRDHGHDLPKKVRALGLAHALSTKAKAGSLIIVEDAKAGEA 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KTK + + ++ + L+ DG + LA +N+ V+VLP G+NVY IL+ +TLV
Sbjct: 134 KTKALKEKFGKL-GLQSALIIDGSELDANFALAARNIPAVDVLPVQGINVYDILRRNTLV 192
Query: 292 MSRDAVNKIVDRM 304
+++ AV+ I +R
Sbjct: 193 LTKAAVSAIEERF 205
>gi|163868649|ref|YP_001609858.1| 50S ribosomal protein L4 [Bartonella tribocorum CIP 105476]
gi|189029491|sp|A9IW26.1|RL4_BART1 RecName: Full=50S ribosomal protein L4
gi|161018305|emb|CAK01863.1| 50S ribosomal protein L4 [Bartonella tribocorum CIP 105476]
Length = 206
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 93/207 (44%), Positives = 132/207 (63%), Gaps = 3/207 (1%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
DLVI + + G + ++ +FD+ R+DI+ RVVRWQLA+RQQGTH ++ S+VS T
Sbjct: 2 DLVIKTLD--GHEAGKLKVSESIFDLVPREDILQRVVRWQLARRQQGTHQSQGRSDVSRT 59
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G K ++QKGTGRARH + R PQFRGG HGP RSHA L KK+R LGL++ALSA+
Sbjct: 60 GAKMFKQKGTGRARHSSARAPQFRGGGKAHGPVFRSHAHDLPKKIRALGLRLALSAKLKA 119
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
L+V ++L V KTK +V++++++ LL G I A N+ ++VLP
Sbjct: 120 KDLIVVDELAVKDAKTKKLVSHFSKL-GFNNALLIGGQEIDINFFRAASNIPNIDVLPIQ 178
Query: 278 GLNVYSILQHDTLVMSRDAVNKIVDRM 304
G+NVY IL+ LV+S+ AV + +R
Sbjct: 179 GINVYDILRRSKLVLSKAAVEALEERF 205
>gi|423712871|ref|ZP_17687169.1| 50S ribosomal protein L4 [Bartonella washoensis Sb944nv]
gi|395410567|gb|EJF77121.1| 50S ribosomal protein L4 [Bartonella washoensis Sb944nv]
Length = 206
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 93/206 (45%), Positives = 130/206 (63%), Gaps = 3/206 (1%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
DLV V + G + ++ VF + R+DI+ RVVRWQLA+RQQGTH ++ S+VS T
Sbjct: 2 DLV--VKTLEGNEAGKLKVSEGVFGLVPREDILQRVVRWQLARRQQGTHQSQGRSDVSRT 59
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G K ++QKGTGRARH + R PQFRGG HGP RSHA L KK+R LGL++ALSA+
Sbjct: 60 GAKMFKQKGTGRARHSSARAPQFRGGGKAHGPVVRSHAHDLPKKIRALGLRLALSAKLKA 119
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
L+V ++L V KTK +V+ ++++ + LL G I A N+ ++VLP
Sbjct: 120 NDLIVVDELNVKDAKTKMLVSSFSKL-GFRNALLIGGKEIDVNFSRAASNIPNIDVLPIQ 178
Query: 278 GLNVYSILQHDTLVMSRDAVNKIVDR 303
G+NVY IL+ LV+S+ AV + +R
Sbjct: 179 GINVYDILRRSKLVLSKAAVEALEER 204
>gi|402497078|ref|YP_006556338.1| 50S ribosomal protein L4 [Wolbachia endosymbiont of Onchocerca
ochengi]
gi|398650351|emb|CCF78521.1| 50S ribosomal protein L4 [Wolbachia endosymbiont of Onchocerca
ochengi]
Length = 204
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 84/195 (43%), Positives = 127/195 (65%), Gaps = 3/195 (1%)
Query: 110 DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGR 169
D G + L +F V + I+H +V WQLAKR+ GTH T+ IS++SGT KP+ QK TGR
Sbjct: 12 DVGVVQLNPLIFFVKQKLSILHDIVTWQLAKRRAGTHKTRGISDISGTTAKPYSQKRTGR 71
Query: 170 ARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVP 229
AR G+LR PQFRGG + GP RSHA LNKKVR+LGLKIALS + +++V + L++
Sbjct: 72 ARQGSLRSPQFRGGEIVFGPVVRSHAYSLNKKVRKLGLKIALSLKYFNNQIIVLDSLDIN 131
Query: 230 SHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDT 289
KT + + + + +++ D G + L T+NLH++N++ +GLNV+ IL H+
Sbjct: 132 MEKTSEVCKFIKNFKFSSFLMVGDYG---DNLLRITRNLHHINLIKPIGLNVFDILNHEC 188
Query: 290 LVMSRDAVNKIVDRM 304
++++ DA+ + DR+
Sbjct: 189 VMLTNDALKDLEDRL 203
>gi|332187850|ref|ZP_08389584.1| ribosomal L4/L1 family protein [Sphingomonas sp. S17]
gi|332012200|gb|EGI54271.1| ribosomal L4/L1 family protein [Sphingomonas sp. S17]
Length = 208
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 92/205 (44%), Positives = 120/205 (58%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V +F D + L +VF + R DI+HRVV WQL KR+ T+ ++V+ +GKK
Sbjct: 3 VKVQSFAGTDAADIELNDEVFGLDPRADILHRVVTWQLEKRRATARGTRERADVARSGKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
RQKG G ARHG R P F GG HG + R LNKKVR LGLK+ALS+ A G L
Sbjct: 63 LGRQKGGGVARHGDRRAPVFIGGGKAHGARVRDFNPGLNKKVRALGLKMALSSHAKAGSL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V DL V +KTK + ++ K L+ DG + LA NL +NVLP+ G N
Sbjct: 123 IVMNDLAVEGNKTKTLQGDLVKLGFGKTALVIDGDAVETSFALAAGNLKEINVLPAAGAN 182
Query: 281 VYSILQHDTLVMSRDAVNKIVDRMH 305
VY IL+HDTLV++R AV K+ R H
Sbjct: 183 VYDILKHDTLVLTRSAVEKLEARFH 207
>gi|426400733|ref|YP_007019705.1| 50S ribosomal protein L4/L1 family protein [Candidatus
Endolissoclinum patella L2]
gi|425857401|gb|AFX98437.1| ribosomal L4/L1 family protein [Candidatus Endolissoclinum patella
L2]
Length = 206
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/204 (43%), Positives = 130/204 (63%), Gaps = 1/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I V N + + L +F + RKDI+ RVV WQLAKR+ G H K ISE+SGT KK
Sbjct: 3 IDVINLDAKKTDEIYLDESIFGLETRKDILTRVVNWQLAKRRSGNHKIKGISEISGTTKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQKGTGRAR G++R FRGG T+HGP RSH +L KK R+LGL+IALS + +G+L
Sbjct: 63 PFRQKGTGRARQGSMRATHFRGGQTVHGPVVRSHRQQLTKKFRKLGLRIALSTKFKDGQL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V ++ KTK + + ++ +L+ DG +++ A +N+ V++LP G N
Sbjct: 123 IVIDEATADRPKTKPLAAKF-KLLGWLSLLVIDGEVLNKNFAYAVRNIPLVDLLPQQGAN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL+ +TLV+++ AV ++ R+
Sbjct: 182 VYDILRRETLVLTKVAVEQLEIRL 205
>gi|333980408|ref|YP_004518353.1| 50S ribosomal protein L4 [Desulfotomaculum kuznetsovii DSM 6115]
gi|333823889|gb|AEG16552.1| ribosomal protein L4/L1e [Desulfotomaculum kuznetsovii DSM 6115]
Length = 208
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 86/200 (43%), Positives = 128/200 (64%), Gaps = 1/200 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N + G + L DVF VP+ ++H V WQLA R+ GTH TKT +EV G G+K
Sbjct: 4 VAVYNINGDQVGEIHLRDDVFGVPVHMSVLHDAVVWQLAGRRLGTHDTKTRAEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRARHG++R P +R G + GP PR ++ +L +KVRRL +K ALSA+ +GK+
Sbjct: 64 PWRQKGTGRARHGSIRSPLWRKGGIVFGPHPRDYSYRLPRKVRRLAMKSALSAKVQDGKI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V EDL++ +TK +V ++ K L+ +K A +N+ + + + GLN
Sbjct: 124 VVLEDLKLEQPRTKDMVRILGNLKVNDKALVVTADREENVIKSA-RNIPGIKPMAADGLN 182
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY +L H+TLV+++DAV ++
Sbjct: 183 VYDLLAHNTLVITKDAVARV 202
>gi|402486083|ref|ZP_10832915.1| 50S ribosomal protein L4 [Rhizobium sp. CCGE 510]
gi|401814739|gb|EJT07069.1| 50S ribosomal protein L4 [Rhizobium sp. CCGE 510]
Length = 206
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/202 (45%), Positives = 124/202 (61%), Gaps = 1/202 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V +D G + L+ +F + R+DII RVVRWQLAK+QQGTH K +EVS TG K +
Sbjct: 5 VKTLEGKDAGKVSLSDAIFGLEPREDIIARVVRWQLAKKQQGTHKAKGRAEVSRTGAKMY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
+QKGTGRARH + R PQFRGG HGP RSH L KKVR LGL++ALSA+ ++V
Sbjct: 65 KQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLRLALSAKIKADDVIV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
++L KTK + + + + T L G + KLA QN+ ++VLP G+NVY
Sbjct: 125 IDNLVATEAKTKALASVFETLGLT-NALFIGGAELDGNFKLAAQNIPNIDVLPIQGINVY 183
Query: 283 SILQHDTLVMSRDAVNKIVDRM 304
IL+ LV+S+ AV + +R
Sbjct: 184 DILRRGKLVLSKAAVEALEERF 205
>gi|395765125|ref|ZP_10445741.1| 50S ribosomal protein L4 [Bartonella sp. DB5-6]
gi|395412978|gb|EJF79457.1| 50S ribosomal protein L4 [Bartonella sp. DB5-6]
Length = 206
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 94/207 (45%), Positives = 130/207 (62%), Gaps = 3/207 (1%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
DLVI + + G + ++ VF + RKDI+ RVVRWQLA+ QQGTH ++ S+VS T
Sbjct: 2 DLVIKTLD--GNETGKLKVSEAVFGLIPRKDILQRVVRWQLARHQQGTHQSQGRSDVSRT 59
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G K ++QKGTGRARH + R PQFRGG HGP RSHA L KKVR LGL++ALSA+
Sbjct: 60 GAKMFKQKGTGRARHSSARAPQFRGGGKAHGPVARSHAHDLPKKVRALGLRLALSAKLKA 119
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
L+V E L V KTK +V++++++ LL G I A N+ +++LP
Sbjct: 120 KDLIVVEALSVKDAKTKMLVSHFSKL-GFDNALLIGGKEIDINFSRAASNIPNIDILPIQ 178
Query: 278 GLNVYSILQHDTLVMSRDAVNKIVDRM 304
G+NVY IL+ LV+S++AV + +R
Sbjct: 179 GINVYDILRRSKLVLSKEAVEFLEERF 205
>gi|395786491|ref|ZP_10466218.1| 50S ribosomal protein L4 [Bartonella tamiae Th239]
gi|423716616|ref|ZP_17690806.1| 50S ribosomal protein L4 [Bartonella tamiae Th307]
gi|395422789|gb|EJF88985.1| 50S ribosomal protein L4 [Bartonella tamiae Th239]
gi|395428690|gb|EJF94765.1| 50S ribosomal protein L4 [Bartonella tamiae Th307]
Length = 206
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 88/196 (44%), Positives = 124/196 (63%), Gaps = 1/196 (0%)
Query: 109 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTG 168
++ G + L+ VF + R+DI+ RVVRWQLA+RQQGTH T++ ++VS TG K ++QKGTG
Sbjct: 11 KETGKVTLSDAVFGLDPREDILQRVVRWQLARRQQGTHQTQSRADVSRTGAKMYKQKGTG 70
Query: 169 RARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEV 228
RARH + R PQFRGG HGP RSHA L KKVR LGL+ ALSA+ L++ +DL +
Sbjct: 71 RARHSSARAPQFRGGGKAHGPVARSHAHDLPKKVRALGLRFALSAKLKSNDLIIVDDLSL 130
Query: 229 PSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHD 288
KTK + + + ++ K LL G + A N+ ++ LP G+NVY IL+
Sbjct: 131 KEPKTKVLTSNFEKL-GFKNALLIGGNELDVNFSRAASNIPNIDFLPVQGINVYDILRRG 189
Query: 289 TLVMSRDAVNKIVDRM 304
LV+S+ AV + +R
Sbjct: 190 KLVLSKAAVEALEERF 205
>gi|408785477|ref|ZP_11197222.1| 50S ribosomal protein L4 [Rhizobium lupini HPC(L)]
gi|417859621|ref|ZP_12504677.1| 50S ribosomal protein L4 [Agrobacterium tumefaciens F2]
gi|418299388|ref|ZP_12911222.1| 50S ribosomal protein L4 [Agrobacterium tumefaciens CCNWGS0286]
gi|424910713|ref|ZP_18334090.1| 50S ribosomal protein L4, bacterial/organelle [Rhizobium
leguminosarum bv. viciae USDA 2370]
gi|338822685|gb|EGP56653.1| 50S ribosomal protein L4 [Agrobacterium tumefaciens F2]
gi|355535189|gb|EHH04479.1| 50S ribosomal protein L4 [Agrobacterium tumefaciens CCNWGS0286]
gi|392846744|gb|EJA99266.1| 50S ribosomal protein L4, bacterial/organelle [Rhizobium
leguminosarum bv. viciae USDA 2370]
gi|408488625|gb|EKJ96934.1| 50S ribosomal protein L4 [Rhizobium lupini HPC(L)]
Length = 206
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/205 (44%), Positives = 128/205 (62%), Gaps = 1/205 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + V +D G + L+ ++F + R+DI+ R+VRWQLAK+QQGTH +K SEVS TG
Sbjct: 1 MELNVKTLEGKDAGKVSLSDEIFGLDPRQDILARMVRWQLAKKQQGTHKSKNRSEVSRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
K ++QKGTGRARH + R PQFRGG HGP RSHA L KKVR L L+ ALSA+
Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPKKVRALALRHALSAKLKAE 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
+L++ + L KTK ++ + + T L+ G + KLA QN+ V+VLP G
Sbjct: 121 ELIIVDQLVASEAKTKALLGSFASLGLT-NALVIGGAELDGNFKLAAQNIPNVDVLPVQG 179
Query: 279 LNVYSILQHDTLVMSRDAVNKIVDR 303
+NVY IL+ LV+S+ AV + +R
Sbjct: 180 INVYDILRRGKLVLSKAAVEALEER 204
>gi|57239335|ref|YP_180471.1| 50S ribosomal protein L4 [Ehrlichia ruminantium str. Welgevonden]
gi|58579301|ref|YP_197513.1| 50S ribosomal protein L4 [Ehrlichia ruminantium str. Welgevonden]
gi|81557285|sp|Q5HAS3.1|RL4_EHRRW RecName: Full=50S ribosomal protein L4
gi|57161414|emb|CAH58338.1| 50S ribosomal protein L4 [Ehrlichia ruminantium str. Welgevonden]
gi|58417927|emb|CAI27131.1| 50S ribosomal protein L4 [Ehrlichia ruminantium str. Welgevonden]
Length = 205
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 88/204 (43%), Positives = 129/204 (63%), Gaps = 2/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N +++ G + L +F V R DI+ VV WQL+KR+ G H TKTI +VSGT K
Sbjct: 3 VNVINIESQNIGKIDLNPLIFSVNYRPDILKMVVEWQLSKRRIGAHKTKTIGDVSGTTAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQK TGRAR G+LR PQFRGG + GP R+HA LNKKVR LGLK+ALS + + KL
Sbjct: 63 PYRQKHTGRARQGSLRSPQFRGGAVIFGPVVRTHAYSLNKKVRNLGLKVALSLKNSCNKL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
L+ + ++V KT ++ + E+ + L G ++ + + +NLH V +L +G N
Sbjct: 123 LILDSIDVNFVKTAQVLRFIKNFEH--QSFLIIGKDYNKGMMYSCKNLHNVTLLKQIGTN 180
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
V+ IL+HD ++++ D V + DR+
Sbjct: 181 VFDILRHDCVILTVDTVKYLEDRL 204
>gi|126736643|ref|ZP_01752383.1| ribosomal protein L4/L1e [Roseobacter sp. CCS2]
gi|126713956|gb|EBA10827.1| ribosomal protein L4/L1e [Roseobacter sp. CCS2]
Length = 206
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/193 (47%), Positives = 120/193 (62%), Gaps = 1/193 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++F + RKDI+HRVVRWQ K QGTH SEVS + KK +RQKGTG AR
Sbjct: 14 GSVELNDEIFGLEPRKDILHRVVRWQRNKAMQGTHDVLGRSEVSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG+ P FRGG T GP PRSHA L KK R+LGLK ALSA+ A G+L++ +D+ V
Sbjct: 74 HGSRGAPIFRGGGTYKGPTPRSHAHDLPKKFRKLGLKHALSAKVAAGELVIVDDINVKDS 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KT + + K+ L+ DG ++ K A N+ +NVLPS G NVY IL+ DTLV
Sbjct: 134 KTSALAKQLGSL-GWKRALIIDGSEVNADFKKAAANITTINVLPSQGANVYDILRSDTLV 192
Query: 292 MSRDAVNKIVDRM 304
+++ V + R+
Sbjct: 193 LTKAGVEALEARL 205
>gi|384918430|ref|ZP_10018507.1| 50S ribosomal protein L4 [Citreicella sp. 357]
gi|384467684|gb|EIE52152.1| 50S ribosomal protein L4 [Citreicella sp. 357]
Length = 205
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/204 (45%), Positives = 123/204 (60%), Gaps = 2/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + L +FD+ R DI+HRVVRWQ K Q GTH KT SEVS + KK
Sbjct: 3 LDVINLDGSAAGEVELTDGIFDLEPRADILHRVVRWQRNKAQAGTHKVKTRSEVSYSTKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
+RQKGTG ARHG+ + P FR G GP PRSHA +L KKVR LGLK+ALSA+A G L
Sbjct: 63 IYRQKGTGGARHGSRKAPIFRKGGIYKGPTPRSHAHELPKKVRALGLKMALSAKAKAGSL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
++ D KTK + + K+ L+ DG ++E A N+ ++VLPS+G N
Sbjct: 123 VII-DAATSEGKTKALAAQVKNL-GWKRALIIDGADVNENFVTAAANIEGLDVLPSMGAN 180
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL+ DTLV+++ V + R+
Sbjct: 181 VYDILRRDTLVLTKAGVEALEARL 204
>gi|337288311|ref|YP_004627783.1| 50S ribosomal protein L4/L1e [Thermodesulfobacterium sp. OPB45]
gi|334902049|gb|AEH22855.1| ribosomal protein L4/L1e [Thermodesulfobacterium geofontis OPF15]
Length = 210
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/195 (47%), Positives = 126/195 (64%), Gaps = 5/195 (2%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L D++ V + ++H VVRWQ+A+ + GT TKT EV G G+KPW QK TGRAR
Sbjct: 17 GEIELPSDLYGVTPKVGLLHEVVRWQMARWRAGTACTKTRGEVRGGGRKPWPQKHTGRAR 76
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+ GG +HGPKPRS+ KLNKKVRRLGLK+ALS+RA K+ V ED V
Sbjct: 77 QGSIRAPQWVGGGVVHGPKPRSYEFKLNKKVRRLGLKMALSSRALANKVYVAEDFPVKDK 136
Query: 232 -KTKFIVNYYNQME-NTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDT 289
KTK + N+ + + N +++ + I EK + NL V VL GLNVY IL H
Sbjct: 137 PKTKVLKNFLDTLGINDALIVVPERNLILEK---SADNLPKVKVLAVEGLNVYDILNHQN 193
Query: 290 LVMSRDAVNKIVDRM 304
L++++DA+ KI +R+
Sbjct: 194 LILAKDALPKIEERL 208
>gi|328953157|ref|YP_004370491.1| 50S ribosomal protein L4/L1e [Desulfobacca acetoxidans DSM 11109]
gi|328453481|gb|AEB09310.1| ribosomal protein L4/L1e [Desulfobacca acetoxidans DSM 11109]
Length = 207
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/207 (42%), Positives = 137/207 (66%), Gaps = 5/207 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+PV + ++ D+ G + L D+F++P++ I+H VV QLA R+ GT STK SEV G
Sbjct: 1 MPVIDVYDIDRNKVGEVSLRDDIFNIPVQGHILHEVVTMQLACRRAGTASTKGRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G KPWRQKGTGRAR G++R P +RGG + GPKPRS+A K KKVRRL LK+ALS++ A+
Sbjct: 61 GHKPWRQKGTGRARVGSIRSPLWRGGGVVFGPKPRSYAYKPPKKVRRLALKMALSSKLAD 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
G+LL+ + S KTK + + + K + + ++ L L+++N+ YV ++ +
Sbjct: 121 GQLLILDQYPYDSPKTKDFIRVLEKFQINKALFITADD--NQVLTLSSRNVPYVQIMRTE 178
Query: 278 GLNVYSILQHDTLVMSRDAVNKIVDRM 304
G+NVY IL++D LV+ + A+++I +R
Sbjct: 179 GINVYDILRYDHLVVFQPAISQIEERF 205
>gi|402821888|ref|ZP_10871404.1| 50S ribosomal protein L4 [Sphingomonas sp. LH128]
gi|402264611|gb|EJU14458.1| 50S ribosomal protein L4 [Sphingomonas sp. LH128]
Length = 208
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/194 (47%), Positives = 122/194 (62%), Gaps = 1/194 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ DVF + R DI+HRVV WQL R+ +T+ SEV+ TGKK QKG G AR
Sbjct: 15 GDIELSDDVFGLEPRADILHRVVTWQLENRRGIARATRERSEVARTGKKFGNQKGGGTAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG P F GG HG + R I LNKK+R LGLK+ALSA+A G L++ + L+V
Sbjct: 75 HGDRAAPVFIGGGKAHGARRREFNISLNKKIRALGLKMALSAKAQNG-LVIVDSLDVADA 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KTK + + KKVL+ DG ++E LA +N+ VNVLP+VG NVY IL+HDTLV
Sbjct: 134 KTKALAGQLAKANFGKKVLVMDGDQVNEGFALAARNIVGVNVLPAVGANVYDILKHDTLV 193
Query: 292 MSRDAVNKIVDRMH 305
++R AV K+ R +
Sbjct: 194 LTRAAVEKLEARFN 207
>gi|240850834|ref|YP_002972234.1| 50S ribosomal protein L4 [Bartonella grahamii as4aup]
gi|240267957|gb|ACS51545.1| 50S ribosomal protein L4 [Bartonella grahamii as4aup]
Length = 206
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 90/207 (43%), Positives = 132/207 (63%), Gaps = 3/207 (1%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
DLVI + + G + ++ +FD+ R+DI+ RVVRWQLA+RQQG+H ++ S+VS T
Sbjct: 2 DLVIKTLD--GNEAGKLKVSEAIFDLVPREDILQRVVRWQLARRQQGSHQSQGRSDVSRT 59
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G K ++QKGTGRARH + R PQFRGG HGP RSHA L KK+R LGL++ALSA+
Sbjct: 60 GAKMFKQKGTGRARHSSARAPQFRGGGKAHGPVVRSHAHDLPKKIRALGLRLALSAKLKA 119
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
L++ ++L V KTK +V++++++ LL G I A N+ +++LP
Sbjct: 120 KDLIIVDELTVKDAKTKMLVSHFSKL-GFNNALLIGGKEIDINFFRAVSNIPNIDILPIQ 178
Query: 278 GLNVYSILQHDTLVMSRDAVNKIVDRM 304
G+NVY IL+ LV+S+ AV + +R
Sbjct: 179 GINVYDILRRSKLVLSKAAVEALEERF 205
>gi|399060854|ref|ZP_10745808.1| 50S ribosomal protein L4, bacterial/organelle [Novosphingobium sp.
AP12]
gi|398036990|gb|EJL30195.1| 50S ribosomal protein L4, bacterial/organelle [Novosphingobium sp.
AP12]
Length = 208
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/190 (48%), Positives = 120/190 (63%), Gaps = 1/190 (0%)
Query: 116 LAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTL 175
L+ DVF + R DI+HRVV WQL R+ +T+ SEV+ TGKK RQKG G ARHG
Sbjct: 19 LSDDVFGIEPRADILHRVVTWQLENRRGTARATRERSEVARTGKKFGRQKGGGTARHGDR 78
Query: 176 RGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKF 235
P F GG HG + R LNKK+R LGLK+ALSA+A G L++ + L+V KTK
Sbjct: 79 AAPVFIGGGKAHGARRRDFNPSLNKKIRALGLKMALSAKALNG-LVIVDSLDVADAKTKV 137
Query: 236 IVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRD 295
+ + KKVL+ DG ++E LA +N+ VNVLP+VG NVY IL+HDTLV++R
Sbjct: 138 LAGELAKANFGKKVLVMDGEQVNEGFALAARNIIGVNVLPAVGANVYDILKHDTLVLTRA 197
Query: 296 AVNKIVDRMH 305
AV K+ R +
Sbjct: 198 AVEKLEARFN 207
>gi|239832121|ref|ZP_04680450.1| 50S ribosomal protein L4 [Ochrobactrum intermedium LMG 3301]
gi|444310461|ref|ZP_21146083.1| 50S ribosomal protein L4 [Ochrobactrum intermedium M86]
gi|239824388|gb|EEQ95956.1| 50S ribosomal protein L4 [Ochrobactrum intermedium LMG 3301]
gi|443486269|gb|ELT49049.1| 50S ribosomal protein L4 [Ochrobactrum intermedium M86]
Length = 206
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 89/204 (43%), Positives = 125/204 (61%), Gaps = 1/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ +T +D G + L ++F + R DI+ RVVRWQLA+RQQG+H + +VS TG K
Sbjct: 3 LTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP RSH L KKVR LGL+ ALSA+A L
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGQAHGPVVRSHDHDLPKKVRALGLRHALSAKAKASDL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
++ +DL KTK +V+ + ++ + LL G I + A N+ ++VLP G+N
Sbjct: 123 IIIDDLAATEAKTKQLVSQFAKL-GLENALLIGGAEIDANFQRAASNIPNIDVLPVQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL+ LV+S+ AV + +R
Sbjct: 182 VYDILRRGKLVLSKAAVEALEERF 205
>gi|114771268|ref|ZP_01448688.1| 50S ribosomal protein L4 [Rhodobacterales bacterium HTCC2255]
gi|114548193|gb|EAU51080.1| 50S ribosomal protein L4 [Rhodobacterales bacterium HTCC2255]
Length = 206
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 91/193 (47%), Positives = 122/193 (63%), Gaps = 1/193 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L VF + R DI+HRVVR+QLAKRQ GTH KT SE S + KK + QKGTG AR
Sbjct: 14 GSIDLDDSVFGLEPRADILHRVVRYQLAKRQAGTHKVKTRSETSYSTKKIYNQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG P FRGG GPK RSHA L KK R+LGLK ALSA+A G+L+V + +E +
Sbjct: 74 HGDRNAPIFRGGGVYKGPKVRSHAHDLTKKFRKLGLKHALSAKATAGELIVIDSVEAKTS 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KT + + KKVL+ DG ++E LA++N+ +++LPS G NVY IL+ +TLV
Sbjct: 134 KTADLAKVVTNL-GWKKVLIIDGTDVNENFLLASRNIDGLDILPSAGANVYDILKSNTLV 192
Query: 292 MSRDAVNKIVDRM 304
+++ + R+
Sbjct: 193 LTKAGAEALEARL 205
>gi|395777952|ref|ZP_10458465.1| 50S ribosomal protein L4 [Bartonella elizabethae Re6043vi]
gi|423715878|ref|ZP_17690099.1| 50S ribosomal protein L4 [Bartonella elizabethae F9251]
gi|395418261|gb|EJF84588.1| 50S ribosomal protein L4 [Bartonella elizabethae Re6043vi]
gi|395429180|gb|EJF95254.1| 50S ribosomal protein L4 [Bartonella elizabethae F9251]
Length = 206
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 90/207 (43%), Positives = 132/207 (63%), Gaps = 3/207 (1%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
DLVI + + G + ++ +FD+ R+DI+ RVVRWQL++RQQGTH ++ S+VS T
Sbjct: 2 DLVIKTLD--GREAGKLKVSESIFDLVPREDILQRVVRWQLSRRQQGTHQSQGRSDVSRT 59
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G K ++QKGTGRARH + R PQFRGG HGP RSHA L KK+R LGL++ALSA+
Sbjct: 60 GAKMFKQKGTGRARHSSARAPQFRGGGKAHGPVVRSHAHDLPKKIRALGLRLALSAKLKA 119
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
L++ ++L V KTK +V++++++ LL G I A N+ +++LP
Sbjct: 120 KDLIIVDELIVKDAKTKKLVSHFSKL-GFNNALLIGGKEIDINFSRAASNIPNIDILPIQ 178
Query: 278 GLNVYSILQHDTLVMSRDAVNKIVDRM 304
G+NVY IL+ LV+S+ AV + +R
Sbjct: 179 GINVYDILRRSKLVLSKAAVEALEERF 205
>gi|386394163|ref|ZP_10078944.1| 50S ribosomal protein L4, bacterial/organelle [Desulfovibrio sp.
U5L]
gi|385735041|gb|EIG55239.1| 50S ribosomal protein L4, bacterial/organelle [Desulfovibrio sp.
U5L]
Length = 210
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 86/197 (43%), Positives = 130/197 (65%), Gaps = 2/197 (1%)
Query: 108 NEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGT 167
N++ G + L +VF+V ++ +++H VVR QLA ++ GTHS KT + VSG GKKPWRQKGT
Sbjct: 11 NQEIGTVELDPEVFEVEVQPELLHLVVRAQLAAKRAGTHSVKTRAFVSGGGKKPWRQKGT 70
Query: 168 GRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLE 227
GRAR G+ R P +RGG +HGP+PR + K+N+KVR+L L++ALSA+ + L++ + L
Sbjct: 71 GRARAGSTRSPLWRGGAVVHGPEPRDYTFKVNRKVRQLALRMALSAKLGDASLVLVDSLA 130
Query: 228 VPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQH 287
VP KTK +V + K +++ L+L+ +N+ + V+ LNVY IL+H
Sbjct: 131 VPEVKTKLMVKVTSDFGLKKALIVLPAS--DNNLELSARNIPGIKVVREDMLNVYDILRH 188
Query: 288 DTLVMSRDAVNKIVDRM 304
D LVM +DA K+ +R+
Sbjct: 189 DHLVMVKDAALKVQERL 205
>gi|340776597|ref|ZP_08696540.1| 50S ribosomal protein L4 [Acetobacter aceti NBRC 14818]
Length = 204
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 89/204 (43%), Positives = 121/204 (59%), Gaps = 3/204 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N G L ++F V R DI+ RVV WQLAKR+ GTH K + EVSGT KK
Sbjct: 3 LDIKTLDNGSAGTATLPDEIFAVAPRADIMARVVHWQLAKRRAGTHKVKGMGEVSGTTKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQKGTG AR G+LR PQ+R G +HGP R H L KKVRRLGL ALS +A +GKL
Sbjct: 63 PYRQKGTGSARQGSLRAPQYRTGGAVHGPVVRDHGYDLPKKVRRLGLISALSQKAKDGKL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + + + + V + L+ D G ++E A +NL ++VLP++G N
Sbjct: 123 IVLDAADGVTKTAELAVKL--KALGLTSALIVD-GTVNEGFVRAARNLPKIDVLPTIGAN 179
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL HD L ++R V + +R+
Sbjct: 180 VYDILNHDVLAVTRAGVEALKERL 203
>gi|260425505|ref|ZP_05779485.1| ribosomal protein, L4/L1 family [Citreicella sp. SE45]
gi|260423445|gb|EEX16695.1| ribosomal protein, L4/L1 family [Citreicella sp. SE45]
Length = 205
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 92/193 (47%), Positives = 120/193 (62%), Gaps = 2/193 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++FD+ R DI+HRVVRWQ K Q GTH KT SEVS + KK +RQKGTG AR
Sbjct: 14 GEVELTDEIFDLEPRADILHRVVRWQRNKAQAGTHKVKTRSEVSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG+ + P FR G GP PRSHA L KKVR LGLK+ALSA+A G L+V D
Sbjct: 74 HGSRKAPIFRKGGIYKGPTPRSHAHDLPKKVRALGLKMALSAKAKSGALVVI-DTADSEG 132
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KTK + + K+ L+ DG ++E A N+ ++VLPS+G NVY IL+ DTLV
Sbjct: 133 KTKALAAQVKSL-GWKRALIIDGAAVNEAFAKAAANIDGLDVLPSMGANVYDILKRDTLV 191
Query: 292 MSRDAVNKIVDRM 304
+++ V + R+
Sbjct: 192 LTKAGVEALEARL 204
>gi|347760287|ref|YP_004867848.1| 50S ribosomal protein L4 [Gluconacetobacter xylinus NBRC 3288]
gi|347579257|dbj|BAK83478.1| LSU ribosomal protein L4P [Gluconacetobacter xylinus NBRC 3288]
Length = 204
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 91/202 (45%), Positives = 120/202 (59%), Gaps = 3/202 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+ N G L ++F V R DI+ RVV WQLAKR+ GTH K + E+SGT KKP+
Sbjct: 5 IKTLDNGSAGTASLPDEIFAVTPRNDIMARVVHWQLAKRRAGTHKVKGMGEISGTTKKPY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQKGTG AR G+LR PQ+R G +HGP R H L KKVRRLGL ALS +AAEGKL+V
Sbjct: 65 RQKGTGSARQGSLRSPQYRTGGVVHGPVVRDHGYDLPKKVRRLGLISALSQKAAEGKLVV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
D S K+ + + T L+ D + E A +NL +++LP++G NVY
Sbjct: 125 L-DAATASGKSAELAKKLKVLGWT-SALIVD-AAVEENFGRAARNLPKIDILPTIGANVY 181
Query: 283 SILQHDTLVMSRDAVNKIVDRM 304
IL HD L ++R V + +R+
Sbjct: 182 DILNHDVLAITRAGVEGLKERL 203
>gi|56417002|ref|YP_154076.1| 50S ribosomal protein L4 [Anaplasma marginale str. St. Maries]
gi|222475370|ref|YP_002563787.1| 50S ribosomal protein L4 [Anaplasma marginale str. Florida]
gi|81599118|sp|Q5PA59.1|RL4_ANAMM RecName: Full=50S ribosomal protein L4
gi|254803710|sp|B9KJ69.1|RL4_ANAMF RecName: Full=50S ribosomal protein L4
gi|56388234|gb|AAV86821.1| 50S ribosomal protein L4 [Anaplasma marginale str. St. Maries]
gi|222419508|gb|ACM49531.1| 50S ribosomal protein L4 (rplD) [Anaplasma marginale str. Florida]
Length = 208
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 91/205 (44%), Positives = 131/205 (63%), Gaps = 3/205 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N NE G + L+ +VF V +R+D++ VV WQLAKR+ GTH T+ IS+VSGT K
Sbjct: 3 VNVVNIKNEVVGKVQLSAEVFGVQLRRDVLRDVVTWQLAKRRAGTHKTRCISDVSGTTAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQK TGRAR G+LR PQFRGG + GP RSHA LNKKVRRLGLK+ALS + ++ KL
Sbjct: 63 PYRQKHTGRARQGSLRSPQFRGGAVVFGPVNRSHAYSLNKKVRRLGLKVALSMKVSDSKL 122
Query: 221 LVFEDLEVPSHKTKFI-VNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGL 279
+V +D + KT V + N + +++ + +K+ A +NL V++L G+
Sbjct: 123 VVLDDSGLLLEKTADAHVAFGNFGAHGSYLVVAE--TYEDKVMCACRNLPNVDLLKYAGI 180
Query: 280 NVYSILQHDTLVMSRDAVNKIVDRM 304
NV IL+HD ++++ V + R+
Sbjct: 181 NVLDILRHDCVILTVGTVKCLESRL 205
>gi|92117099|ref|YP_576828.1| 50S ribosomal protein L4 [Nitrobacter hamburgensis X14]
gi|122418094|sp|Q1QN29.1|RL4_NITHX RecName: Full=50S ribosomal protein L4
gi|91799993|gb|ABE62368.1| LSU ribosomal protein L4P [Nitrobacter hamburgensis X14]
Length = 206
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 91/206 (44%), Positives = 127/206 (61%), Gaps = 1/206 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + VT G + L+ +F + RKD+I R V WQLAKRQ GTH TK +E+ TG
Sbjct: 1 MELNVTTLEGNAAGSVQLSDGIFGLEPRKDLIQRCVNWQLAKRQAGTHKTKGRAEIWRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP RSHA L KKVR L L+ ALSA+A +G
Sbjct: 61 KKMFKQKGTGNARHGSARVPQFRGGGRAFGPVVRSHAHDLPKKVRALALRHALSAKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
L+V + E+ KTK +V +++ + T L+ DG +H A +N+ ++VLP G
Sbjct: 121 GLIVIDSAELNEAKTKALVGHFSGLGLT-NALIVDGAAVHAGFATAARNIPNIDVLPIQG 179
Query: 279 LNVYSILQHDTLVMSRDAVNKIVDRM 304
+NVY IL+ LV+++ AV+ + R
Sbjct: 180 INVYDILRRRKLVLTKAAVDALEARF 205
>gi|426404881|ref|YP_007023852.1| 50S ribosomal protein L4 [Bdellovibrio bacteriovorus str. Tiberius]
gi|425861549|gb|AFY02585.1| 50S ribosomal protein L4 [Bdellovibrio bacteriovorus str. Tiberius]
Length = 209
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 91/203 (44%), Positives = 126/203 (62%), Gaps = 3/203 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N+ E G + LA DVF+ P++K+++H VV+WQLA R+QGTH TKT VSG GKK
Sbjct: 4 VNVLNWKKEKVGSVELAADVFETPVKKEVLHTVVQWQLAARRQGTHMTKTKGLVSGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P++QKGTG AR G+ R GG T GP+PRS+A L KKVRRLGL +ALS EGKL
Sbjct: 64 PFKQKGTGGARQGSSRSILMPGGGTAFGPQPRSYAFVLPKKVRRLGLSMALSHLQKEGKL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+ + + + +N KK +L D + +K A++NL P GLN
Sbjct: 124 FIVDSMASEGKTAE--LNKRLAAFGLKKAVLVD-SVVDDKFNRASKNLPTFKYFPVEGLN 180
Query: 281 VYSILQHDTLVMSRDAVNKIVDR 303
V+ +L++D V+++D+V KIVDR
Sbjct: 181 VFDLLKYDAAVITKDSVAKIVDR 203
>gi|357635318|ref|ZP_09133196.1| ribosomal protein L4/L1e [Desulfovibrio sp. FW1012B]
gi|357583872|gb|EHJ49205.1| ribosomal protein L4/L1e [Desulfovibrio sp. FW1012B]
Length = 210
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 86/197 (43%), Positives = 130/197 (65%), Gaps = 2/197 (1%)
Query: 108 NEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGT 167
N++ G + L +VF+V ++ +++H VVR QLA ++ GTHS KT + VSG GKKPWRQKGT
Sbjct: 11 NQEIGTVELDPEVFEVEVQPELLHLVVRAQLAAKRAGTHSVKTRAFVSGGGKKPWRQKGT 70
Query: 168 GRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLE 227
GRAR G+ R P +RGG +HGP+PR + K+N+KVR+L L++ALSA+ + L++ + L
Sbjct: 71 GRARAGSTRSPLWRGGAVVHGPEPRDYTFKVNRKVRQLALRMALSAKLGDASLVLVDTLA 130
Query: 228 VPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQH 287
VP KTK +V + K +++ L+L+ +N+ + V+ LNVY IL+H
Sbjct: 131 VPEVKTKLMVKVTSDFGLKKALIVLPAS--DNNLELSARNIPGIKVVREDMLNVYDILRH 188
Query: 288 DTLVMSRDAVNKIVDRM 304
D LVM +DA K+ +R+
Sbjct: 189 DHLVMVKDAALKVQERL 205
>gi|119383512|ref|YP_914568.1| 50S ribosomal protein L4 [Paracoccus denitrificans PD1222]
gi|166234698|sp|A1B028.1|RL4_PARDP RecName: Full=50S ribosomal protein L4
gi|119373279|gb|ABL68872.1| LSU ribosomal protein L4P [Paracoccus denitrificans PD1222]
Length = 206
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 94/193 (48%), Positives = 124/193 (64%), Gaps = 1/193 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ D+F + R D++HRVVRWQ AK Q GTHS S+VS + KK +RQKGTG AR
Sbjct: 14 GDIDLSDDIFGLEPRADLLHRVVRWQRAKAQAGTHSVLGKSDVSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG+ + P FR G GP PRSHA L KKVR LGLK ALSA+AA G+L+V + L +
Sbjct: 74 HGSRKAPIFRHGGVYKGPTPRSHAFDLPKKVRALGLKHALSAKAAAGELVVVDSLNIAEA 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KT + + K+VL+ DG ++E A +NL V+VLPS+G NVY IL+ DTLV
Sbjct: 134 KTAAVAKAVKE-NGWKRVLVIDGAEVNENFARAARNLEGVDVLPSMGANVYDILRRDTLV 192
Query: 292 MSRDAVNKIVDRM 304
++R V + R+
Sbjct: 193 LTRAGVEALEARL 205
>gi|330795906|ref|XP_003286011.1| hypothetical protein DICPUDRAFT_149944 [Dictyostelium purpureum]
gi|325084009|gb|EGC37447.1| hypothetical protein DICPUDRAFT_149944 [Dictyostelium purpureum]
Length = 258
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 88/211 (41%), Positives = 135/211 (63%), Gaps = 4/211 (1%)
Query: 95 LHQDLVIPVTNFFNEDK-GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISE 153
L +++ P+ +F ++ G + L+ D+F P+R D++HR+VR+Q AK QQGTH +
Sbjct: 42 LKEEIEFPIIDFDSKSNVGTIQLSKDIFSRPLRIDLLHRMVRYQRAKSQQGTHQALNMER 101
Query: 154 VSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSA 213
+ + KKP++QKGTGRAR GT Q +GG P RSHA L KKVR+L LK+ALS+
Sbjct: 102 KTSSNKKPFKQKGTGRARQGTNHAVQMKGGARAFPPTSRSHAHDLPKKVRQLCLKVALSS 161
Query: 214 RAAEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNV 273
+ A+ KL++ ++ ++ SHKTK +V+ Q + LL D I E L ++ N+ ++
Sbjct: 162 KLAQNKLIIIDEFKLSSHKTKDLVSKLPQ--EWGRSLLVDKD-ISENLNRSSLNVQKIDT 218
Query: 274 LPSVGLNVYSILQHDTLVMSRDAVNKIVDRM 304
LP GLNVYSILQ+DTLV++R ++ + R+
Sbjct: 219 LPERGLNVYSILQNDTLVLTRSSIEALQSRL 249
>gi|115525584|ref|YP_782495.1| 50S ribosomal protein L4 [Rhodopseudomonas palustris BisA53]
gi|122295409|sp|Q07KL9.1|RL4_RHOP5 RecName: Full=50S ribosomal protein L4
gi|115519531|gb|ABJ07515.1| LSU ribosomal protein L4P [Rhodopseudomonas palustris BisA53]
Length = 206
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 91/204 (44%), Positives = 128/204 (62%), Gaps = 1/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ VT +D G + L+ ++F + R DII R V WQLAKRQ GTH K +E+ TGKK
Sbjct: 3 LKVTTLEGKDAGSVQLSDEIFGLDPRSDIIQRCVIWQLAKRQAGTHKAKGRAEIWRTGKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTG ARHG+ R PQFRGG GP RSHAI L KKVR + LK ALSA+A +G L
Sbjct: 63 MYKQKGTGGARHGSQRVPQFRGGGRAFGPVVRSHAIDLPKKVRAMALKHALSAKAKDGGL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + + S KTK +V ++ + T L+ DG ++ +A +N+ ++VLP G+N
Sbjct: 123 IVIDQATLDSAKTKALVGHFAGLGLT-SALIIDGAELNNGFAVAARNIPNIDVLPIQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL+ LV+++ AV+ + R
Sbjct: 182 VYDILRRQKLVLTKAAVDALEARF 205
>gi|326388198|ref|ZP_08209801.1| 50S ribosomal protein L4 [Novosphingobium nitrogenifigens DSM
19370]
gi|326207364|gb|EGD58178.1| 50S ribosomal protein L4 [Novosphingobium nitrogenifigens DSM
19370]
Length = 207
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 92/194 (47%), Positives = 123/194 (63%), Gaps = 1/194 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ VF + R DI+HRVV WQL R+ + S+V+ TGKK RQKG G AR
Sbjct: 14 GDVELSDAVFGLEPRADILHRVVTWQLENRRGIARKARERSDVARTGKKFGRQKGGGTAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG + P F GG HGP+ R I LNKKVR LGLK+ALSA+A G L+V + L++
Sbjct: 74 HGDRKAPVFIGGGKAHGPRVREFNISLNKKVRALGLKMALSAKAKTG-LVVVDTLDLADA 132
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KTK +V + + KKVL+ DG ++E A +N+ VNVLP++G NVY IL+HDTLV
Sbjct: 133 KTKVLVGKFAKAGFGKKVLVVDGEAVNEGFARAARNIVGVNVLPAIGANVYDILKHDTLV 192
Query: 292 MSRDAVNKIVDRMH 305
++R AV K+ R +
Sbjct: 193 LTRAAVEKLEARFN 206
>gi|383645524|ref|ZP_09957930.1| 50S ribosomal protein L4 [Sphingomonas elodea ATCC 31461]
Length = 208
Score = 167 bits (422), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 91/205 (44%), Positives = 122/205 (59%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V +KG + L ++F + R DI+HRVV WQL KR+ T+ S+V+ +GKK
Sbjct: 3 VKVQTLDAAEKGDIELNDEIFGLDPRADILHRVVTWQLEKRRGTARGTRERSDVARSGKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
RQKG G ARHG R P F GG HG + R LNKK+R LGLK+ALS+ A G L
Sbjct: 63 WGRQKGGGTARHGDRRAPVFIGGGKAHGARVRDFNPSLNKKIRALGLKMALSSHAKAGSL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + L V + KTK + ++ KK L+ DG I LA NLH V+VLP++G N
Sbjct: 123 IVMDSLVVENGKTKVLAGNLEKLGFGKKALVIDGDTIETTFALAAGNLHQVDVLPAIGAN 182
Query: 281 VYSILQHDTLVMSRDAVNKIVDRMH 305
VY IL+ DTLV++R AV K+ R +
Sbjct: 183 VYDILKSDTLVLTRAAVEKLEARFN 207
>gi|330993847|ref|ZP_08317779.1| 50S ribosomal protein L4 [Gluconacetobacter sp. SXCC-1]
gi|329759115|gb|EGG75627.1| 50S ribosomal protein L4 [Gluconacetobacter sp. SXCC-1]
Length = 204
Score = 167 bits (422), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 90/202 (44%), Positives = 119/202 (58%), Gaps = 3/202 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+ N G L ++F R DI+ RVV WQLAKR+ GTH K + E+SGT KKP+
Sbjct: 5 IKTLDNGSAGTASLPDEIFAATPRPDILARVVHWQLAKRRAGTHKVKGMGEISGTTKKPY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQKGTG AR G+LR PQ+R G +HGP R H L KKVRRLGL ALS +AAEGKL+V
Sbjct: 65 RQKGTGSARQGSLRSPQYRTGGVVHGPVVRDHGYDLPKKVRRLGLIFALSQKAAEGKLVV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
D S K+ + + T L+ D + E A +NL +++LP++G NVY
Sbjct: 125 L-DAATASGKSAELAKKLKVLGWT-SALIVD-AAVEENFGRAARNLPKIDILPTIGANVY 181
Query: 283 SILQHDTLVMSRDAVNKIVDRM 304
IL HD L ++R V + +R+
Sbjct: 182 DILNHDVLAITRAGVEGLKERL 203
>gi|269958585|ref|YP_003328372.1| 50S ribosomal protein L4 [Anaplasma centrale str. Israel]
gi|269848414|gb|ACZ49058.1| 50S ribosomal protein L4 [Anaplasma centrale str. Israel]
Length = 208
Score = 167 bits (422), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 91/204 (44%), Positives = 124/204 (60%), Gaps = 1/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N NE G + L VF V R+D++ VV WQLAKR+ GTH T+ IS+V GT K
Sbjct: 3 VNVVNIKNEVVGQLELNASVFGVQPRRDVLRDVVDWQLAKRRAGTHKTRCISDVRGTTAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQK TGRAR G+LR PQFRGG + GP RSHA LNKKVRRLGLK+ALS + ++ KL
Sbjct: 63 PYRQKHTGRARQGSLRSPQFRGGAVVFGPVNRSHAYSLNKKVRRLGLKVALSMKVSDSKL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V +D + KT + L+ G +K+ A +NL V++L G+N
Sbjct: 123 VVLDDSGLVLEKTADARAAFGNFGAYGSYLVVAEG-YEDKVACACRNLPNVDLLKYAGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
V IL+HD ++++ AV + R+
Sbjct: 182 VLDILRHDCVILTVGAVKCLESRL 205
>gi|83584315|gb|ABC24932.1| plastid 50S ribosomal protein L4 family [Prototheca wickerhamii]
Length = 228
Score = 167 bits (422), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 80/147 (54%), Positives = 102/147 (69%)
Query: 92 TIGLHQDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTI 151
G DLV+P+ N G L GDVF+ +R DI+HRVVRWQLA RQQGTH TKT
Sbjct: 62 AFGSEADLVVPLLNHRGRSVGSFTLGGDVFNTVVRPDILHRVVRWQLAARQQGTHKTKTR 121
Query: 152 SEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIAL 211
+EV G G+KP QKG G +R G++R PQ+RGG HGP PRSHAIKL K +RRLGL+ AL
Sbjct: 122 TEVRGGGRKPRPQKGGGVSRQGSIRAPQWRGGGVAHGPVPRSHAIKLLKSIRRLGLRSAL 181
Query: 212 SARAAEGKLLVFEDLEVPSHKTKFIVN 238
SA+A EG+L++ + L +P KT+ + +
Sbjct: 182 SAKAREGRLVIVDTLRLPEAKTRALAD 208
>gi|114327219|ref|YP_744376.1| 50S ribosomal protein L4 [Granulibacter bethesdensis CGDNIH1]
gi|122327801|sp|Q0BUP9.1|RL4_GRABC RecName: Full=50S ribosomal protein L4
gi|114315393|gb|ABI61453.1| LSU ribosomal protein L1E (= L4P) [Granulibacter bethesdensis
CGDNIH1]
Length = 215
Score = 167 bits (422), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 91/206 (44%), Positives = 119/206 (57%), Gaps = 2/206 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ I + N G L ++F R DI+ RVV WQLA R+ GTH K + EVSGT
Sbjct: 1 MQIEIKTLDNGSAGTAELPDEIFAATPRADIMARVVHWQLACRRAGTHKVKGMGEVSGTT 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KKP+RQKGTG AR G+LR PQFR G +HGP R H L KKVRRLGL ALS + AEG
Sbjct: 61 KKPYRQKGTGNARQGSLRAPQFRTGGAVHGPVVRDHGYDLPKKVRRLGLISALSQKQAEG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
KL+V D KT+ + + + L+ DG + E A+++L V+VLP++G
Sbjct: 121 KLVVI-DTAAGMEKTRDLAAKLRAL-GWRSALIVDGASVDEGFARASRSLLAVDVLPTIG 178
Query: 279 LNVYSILQHDTLVMSRDAVNKIVDRM 304
NVY IL HD L ++ V + R+
Sbjct: 179 ANVYDILNHDVLAITVAGVEALKARL 204
>gi|56551414|ref|YP_162253.1| 50S ribosomal protein L4 [Zymomonas mobilis subsp. mobilis ZM4]
gi|260752973|ref|YP_003225866.1| 50S ribosomal protein L4 [Zymomonas mobilis subsp. mobilis NCIMB
11163]
gi|384411965|ref|YP_005621330.1| 50S ribosomal protein L4 [Zymomonas mobilis subsp. mobilis ATCC
10988]
gi|397676626|ref|YP_006518164.1| 50S ribosomal protein L4 [Zymomonas mobilis subsp. mobilis ATCC
29191]
gi|81598314|sp|Q5NQ63.1|RL4_ZYMMO RecName: Full=50S ribosomal protein L4
gi|56542988|gb|AAV89142.1| ribosomal protein L4/L1e [Zymomonas mobilis subsp. mobilis ZM4]
gi|258552336|gb|ACV75282.1| ribosomal protein L4/L1e [Zymomonas mobilis subsp. mobilis NCIMB
11163]
gi|335932339|gb|AEH62879.1| ribosomal protein L4/L1e [Zymomonas mobilis subsp. mobilis ATCC
10988]
gi|395397315|gb|AFN56642.1| ribosomal protein L4/L1e [Zymomonas mobilis subsp. mobilis ATCC
29191]
Length = 207
Score = 167 bits (422), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 93/205 (45%), Positives = 127/205 (61%), Gaps = 1/205 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + KG + L VF + R DI+HRVV WQL KR+ T +T+ S+V+ +GKK
Sbjct: 3 VEVQSLDASKKGSIELNDAVFGIEPRADILHRVVTWQLEKRRAPTRATRERSDVARSGKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
RQKG G ARHG R P F GG HG + R LNKKVR LGL++ALS++A G L
Sbjct: 63 FGRQKGGGTARHGDRRSPIFIGGGKAHGARARVFNPSLNKKVRALGLRMALSSKAKTGTL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V E L+V + KTK + + KVL+ DG ++E A+ NL ++VLP+VG N
Sbjct: 123 VVIEALDVEA-KTKLLAAQIQSLGFGPKVLVVDGDTVNENFARASSNLVGLDVLPAVGAN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRMH 305
VY IL+HDTLV++R AV K+ R++
Sbjct: 182 VYDILKHDTLVLTRAAVEKLEARLN 206
>gi|209548936|ref|YP_002280853.1| 50S ribosomal protein L4 [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|424914485|ref|ZP_18337849.1| 50S ribosomal protein L4, bacterial/organelle [Rhizobium
leguminosarum bv. trifolii WSM597]
gi|226730713|sp|B5ZYT6.1|RL4_RHILW RecName: Full=50S ribosomal protein L4
gi|209534692|gb|ACI54627.1| ribosomal protein L4/L1e [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|392850661|gb|EJB03182.1| 50S ribosomal protein L4, bacterial/organelle [Rhizobium
leguminosarum bv. trifolii WSM597]
Length = 206
Score = 166 bits (421), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 89/202 (44%), Positives = 124/202 (61%), Gaps = 1/202 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V +D G + L+ +F + R+DI+ RV+RWQLAK+QQGTH K +EVS TG K +
Sbjct: 5 VKTLEGKDAGKVSLSDAIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTGAKMY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
+QKGTGRARH + R PQFRGG HGP RSH L KKVR LGL++ALSA+ ++V
Sbjct: 65 KQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLRLALSAKIKADDVIV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
++L KTK + + + + T L G + KLA QN+ ++VLP G+NVY
Sbjct: 125 IDNLVAAEAKTKALASVFETLGLT-NALFIGGAELDGNFKLAAQNIPNIDVLPIQGINVY 183
Query: 283 SILQHDTLVMSRDAVNKIVDRM 304
I++ LV+S+ AV + +R
Sbjct: 184 DIVRRGKLVLSKAAVEALEERF 205
>gi|90424936|ref|YP_533306.1| 50S ribosomal protein L4 [Rhodopseudomonas palustris BisB18]
gi|109893630|sp|Q211E9.1|RL4_RHOPB RecName: Full=50S ribosomal protein L4
gi|90106950|gb|ABD88987.1| LSU ribosomal protein L4P [Rhodopseudomonas palustris BisB18]
Length = 206
Score = 166 bits (421), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 91/204 (44%), Positives = 128/204 (62%), Gaps = 1/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ VT ++ G + L+ ++F + R DII R V WQLAKRQ GTH K +EV TGKK
Sbjct: 3 LKVTTLEGKEAGSVQLSDEIFGLDPRVDIIQRCVNWQLAKRQAGTHKAKGRAEVWRTGKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTG ARHG+ R PQFRGG GP RSHA L KKVR L LK ALSA+A +G L
Sbjct: 63 MYKQKGTGGARHGSQRVPQFRGGGRAFGPVVRSHAFDLPKKVRALALKHALSAKAKDGGL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V E + + KTK +V +++ + T L+ DG ++ +A +N+ ++VLP G+N
Sbjct: 123 IVIESATLEAAKTKALVGHFSGLGLT-SALIIDGAELNNGFAVAARNIPNIDVLPIQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL+ LV+++ AV+ + R
Sbjct: 182 VYDILRRQKLVLTKAAVDALEARF 205
>gi|418937871|ref|ZP_13491458.1| ribosomal protein L4/L1e [Rhizobium sp. PDO1-076]
gi|375055420|gb|EHS51681.1| ribosomal protein L4/L1e [Rhizobium sp. PDO1-076]
Length = 206
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 91/201 (45%), Positives = 124/201 (61%), Gaps = 1/201 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V ++ G + L+ D+F + R+DII R++RWQLA ++QGTH TKT +EVS TG K +
Sbjct: 5 VKTLEGKEAGKVSLSDDIFGLDPREDIIARMIRWQLANKRQGTHKTKTRAEVSRTGAKMY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
+QKGTGRARH + R PQFRGG HGP RSHA L KKVR L L+ ALSA+ L++
Sbjct: 65 KQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPKKVRALALRHALSAKLKSEDLII 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
+ L KTK +V + + T L+ G I KLA N+ ++VLP G+NVY
Sbjct: 125 IDQLISAEAKTKALVGTFELLGLT-NALVIGGAEIDSNFKLAAANIPNIDVLPVQGINVY 183
Query: 283 SILQHDTLVMSRDAVNKIVDR 303
IL+ LV+S+ AV + +R
Sbjct: 184 DILRRGKLVLSKAAVEALEER 204
>gi|319789239|ref|YP_004150872.1| ribosomal protein L4/L1e [Thermovibrio ammonificans HB-1]
gi|317113741|gb|ADU96231.1| ribosomal protein L4/L1e [Thermovibrio ammonificans HB-1]
Length = 208
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 89/208 (42%), Positives = 128/208 (61%), Gaps = 3/208 (1%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ I V + N++ G + + ++ + PI++ + V+WQLAKR++GTHSTKT EV G G
Sbjct: 1 MEIKVVDLNNKETGTVQIKDEIANAPIKQHAVWETVKWQLAKRRRGTHSTKTRGEVRGGG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
+KPW QK TGRAR G++R PQ+ GG +HGPKPR ++ L KKVR++ LK ++ R EG
Sbjct: 61 RKPWPQKHTGRARQGSIRAPQWVGGGVVHGPKPRDYSYNLPKKVRKVALKSVVAGRIQEG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQ--MENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
+V ED KTK V + +EN+ KVLL + E L+ +NL V VLP
Sbjct: 121 NFIVVEDFSFEKPKTKQAVEFLKNLGLENS-KVLLVVPAELDENTYLSFRNLPNVKVLPV 179
Query: 277 VGLNVYSILQHDTLVMSRDAVNKIVDRM 304
GLNVY IL +D V+ + + KI +R+
Sbjct: 180 EGLNVYDILCYDKCVVFKSILPKIEERL 207
>gi|420241691|ref|ZP_14745801.1| 50S ribosomal protein L4, bacterial/organelle [Rhizobium sp. CF080]
gi|398069950|gb|EJL61275.1| 50S ribosomal protein L4, bacterial/organelle [Rhizobium sp. CF080]
Length = 206
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 91/201 (45%), Positives = 124/201 (61%), Gaps = 1/201 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V +D G + L+ ++F + R+DI+ R+VRWQLAK+QQGTH TK +EVS TG K +
Sbjct: 5 VKTLEGKDAGKVALSDEIFGLDPREDILARMVRWQLAKKQQGTHKTKGRAEVSRTGAKMY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
+QKGTGRARH + R PQFRGG HGP RSH L KKVR L L+ ALSA+ +++
Sbjct: 65 KQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALALRHALSAKMKAEDIII 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
++L KTK + + + T VL G + KLA QN+ V+VLP G+NVY
Sbjct: 125 VDNLVAAEAKTKALAGSFASLGLT-NVLFIGGVELDSNFKLAAQNIPNVDVLPVQGINVY 183
Query: 283 SILQHDTLVMSRDAVNKIVDR 303
IL+ LV+S+ AV + +R
Sbjct: 184 DILRRGKLVLSKAAVEALEER 204
>gi|296447531|ref|ZP_06889453.1| ribosomal protein L4/L1e [Methylosinus trichosporium OB3b]
gi|296254919|gb|EFH02024.1| ribosomal protein L4/L1e [Methylosinus trichosporium OB3b]
Length = 206
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 89/206 (43%), Positives = 133/206 (64%), Gaps = 1/206 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ I VT++ ++ G + LA ++F + R D+I R++RWQLAKR+ GTH+ K ++++ TG
Sbjct: 1 MQIGVTSYDGQEAGSIELADEIFGLEPRTDLIFRMIRWQLAKRRAGTHAVKNRADIARTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQF GG GP RSH L KKVR L LK ALSA+A +G
Sbjct: 61 KKMYKQKGTGGARHGSRRVPQFIGGGRAFGPVVRSHEHDLPKKVRALALKHALSAKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
++V+E+ + + KTK + +++ T L+ DG LA +NL ++VLP G
Sbjct: 121 AIIVWENASLDAPKTKMLKAGFDKTGLT-SALIIDGAEPQVNFALAARNLPKIDVLPVTG 179
Query: 279 LNVYSILQHDTLVMSRDAVNKIVDRM 304
+NVY IL+ D LV++R AV+ + R+
Sbjct: 180 VNVYDILRRDKLVLTRAAVDALEARL 205
>gi|242278659|ref|YP_002990788.1| 50S ribosomal protein L4 [Desulfovibrio salexigens DSM 2638]
gi|259491552|sp|C6C186.1|RL4_DESAD RecName: Full=50S ribosomal protein L4
gi|242121553|gb|ACS79249.1| ribosomal protein L4/L1e [Desulfovibrio salexigens DSM 2638]
Length = 206
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 86/204 (42%), Positives = 132/204 (64%), Gaps = 2/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I + + ++ G M LA +VF+VP++ +I+H VVR QLA ++QGTH+TKT G G K
Sbjct: 4 ITIYDQTKKEVGSMDLAPEVFEVPVKPEILHLVVRSQLAAKRQGTHATKTRGMKRGGGAK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G+ R P +RGG T GP+PR ++ K+NKKVRRL LK+AL++R +E K+
Sbjct: 64 PWRQKGTGRARAGSTRSPLWRGGGTTFGPQPRDYSFKVNKKVRRLALKMALTSRLSEEKM 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V +++++P KTK V + K +++ KL L+ +N+ + ++ + LN
Sbjct: 124 MVVKNIDLPEIKTKLFVEVAEALGLEKALVVVKDA--DNKLLLSARNIPGIKLITADQLN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL+ LVM +A + +R+
Sbjct: 182 VYDILKARQLVMLENAAQDLQERL 205
>gi|23502109|ref|NP_698236.1| 50S ribosomal protein L4 [Brucella suis 1330]
gi|62290143|ref|YP_221936.1| 50S ribosomal protein L4 [Brucella abortus bv. 1 str. 9-941]
gi|82700066|ref|YP_414640.1| 50S ribosomal protein L4 [Brucella melitensis biovar Abortus 2308]
gi|148559402|ref|YP_001259152.1| 50S ribosomal protein L4 [Brucella ovis ATCC 25840]
gi|161619188|ref|YP_001593075.1| 50S ribosomal protein L4 [Brucella canis ATCC 23365]
gi|163843498|ref|YP_001627902.1| 50S ribosomal protein L4 [Brucella suis ATCC 23445]
gi|189024381|ref|YP_001935149.1| 50S ribosomal protein L4 [Brucella abortus S19]
gi|225627702|ref|ZP_03785739.1| 50S ribosomal protein L4 [Brucella ceti str. Cudo]
gi|225852729|ref|YP_002732962.1| 50S ribosomal protein L4 [Brucella melitensis ATCC 23457]
gi|237815651|ref|ZP_04594648.1| 50S ribosomal protein L4 [Brucella abortus str. 2308 A]
gi|256263781|ref|ZP_05466313.1| ribosomal protein L4 [Brucella melitensis bv. 2 str. 63/9]
gi|260546691|ref|ZP_05822430.1| ribosomal protein L4 [Brucella abortus NCTC 8038]
gi|260565516|ref|ZP_05836000.1| ribosomal protein L4/L1e [Brucella melitensis bv. 1 str. 16M]
gi|260566239|ref|ZP_05836709.1| ribosomal protein L4/L1e [Brucella suis bv. 4 str. 40]
gi|260754975|ref|ZP_05867323.1| ribosomal protein L4 [Brucella abortus bv. 6 str. 870]
gi|260758191|ref|ZP_05870539.1| ribosomal protein L4 [Brucella abortus bv. 4 str. 292]
gi|260762017|ref|ZP_05874360.1| ribosomal protein L4 [Brucella abortus bv. 2 str. 86/8/59]
gi|260883984|ref|ZP_05895598.1| ribosomal protein L4 [Brucella abortus bv. 9 str. C68]
gi|261214229|ref|ZP_05928510.1| ribosomal protein L4 [Brucella abortus bv. 3 str. Tulya]
gi|261219580|ref|ZP_05933861.1| ribosomal protein L4 [Brucella ceti M13/05/1]
gi|261314047|ref|ZP_05953244.1| ribosomal protein L4 [Brucella pinnipedialis M163/99/10]
gi|261317866|ref|ZP_05957063.1| ribosomal protein L4 [Brucella pinnipedialis B2/94]
gi|261322075|ref|ZP_05961272.1| ribosomal protein L4 [Brucella ceti M644/93/1]
gi|261325319|ref|ZP_05964516.1| ribosomal protein L4 [Brucella neotomae 5K33]
gi|261752541|ref|ZP_05996250.1| ribosomal protein L4 [Brucella suis bv. 5 str. 513]
gi|261755200|ref|ZP_05998909.1| ribosomal protein L4 [Brucella suis bv. 3 str. 686]
gi|261758424|ref|ZP_06002133.1| ribosomal protein L4 [Brucella sp. F5/99]
gi|265988895|ref|ZP_06101452.1| ribosomal protein L4 [Brucella pinnipedialis M292/94/1]
gi|265991309|ref|ZP_06103866.1| ribosomal protein L4 [Brucella melitensis bv. 1 str. Rev.1]
gi|265995146|ref|ZP_06107703.1| ribosomal protein L4 [Brucella melitensis bv. 3 str. Ether]
gi|297248538|ref|ZP_06932256.1| 50S ribosomal protein L4/L1 [Brucella abortus bv. 5 str. B3196]
gi|306840302|ref|ZP_07473074.1| 50S ribosomal protein L4 [Brucella sp. BO2]
gi|306844136|ref|ZP_07476730.1| 50S ribosomal protein L4 [Brucella inopinata BO1]
gi|340790850|ref|YP_004756315.1| 50S ribosomal protein L4 [Brucella pinnipedialis B2/94]
gi|376273038|ref|YP_005151616.1| 50S ribosomal protein L4 [Brucella abortus A13334]
gi|376276156|ref|YP_005116595.1| 50S ribosomal protein L4 [Brucella canis HSK A52141]
gi|376280903|ref|YP_005154909.1| 50S ribosomal protein L4 [Brucella suis VBI22]
gi|384211599|ref|YP_005600681.1| 50S ribosomal protein L4 [Brucella melitensis M5-90]
gi|384224897|ref|YP_005616061.1| 50S ribosomal protein L4 [Brucella suis 1330]
gi|384408707|ref|YP_005597328.1| 50S ribosomal protein4/L1e [Brucella melitensis M28]
gi|384445287|ref|YP_005604006.1| 50S ribosomal protein L4 [Brucella melitensis NI]
gi|423166674|ref|ZP_17153377.1| 50S ribosomal protein L4 [Brucella abortus bv. 1 str. NI435a]
gi|423170952|ref|ZP_17157627.1| 50S ribosomal protein L4 [Brucella abortus bv. 1 str. NI474]
gi|423172966|ref|ZP_17159637.1| 50S ribosomal protein L4 [Brucella abortus bv. 1 str. NI486]
gi|423178341|ref|ZP_17164985.1| 50S ribosomal protein L4 [Brucella abortus bv. 1 str. NI488]
gi|423180382|ref|ZP_17167023.1| 50S ribosomal protein L4 [Brucella abortus bv. 1 str. NI010]
gi|423183514|ref|ZP_17170151.1| 50S ribosomal protein L4 [Brucella abortus bv. 1 str. NI016]
gi|423185546|ref|ZP_17172160.1| 50S ribosomal protein L4 [Brucella abortus bv. 1 str. NI021]
gi|423188681|ref|ZP_17175291.1| 50S ribosomal protein L4 [Brucella abortus bv. 1 str. NI259]
gi|46577272|sp|Q8G077.1|RL4_BRUSU RecName: Full=50S ribosomal protein L4
gi|51338733|sp|Q8YHN9.2|RL4_BRUME RecName: Full=50S ribosomal protein L4
gi|75496682|sp|Q57CQ9.1|RL4_BRUAB RecName: Full=50S ribosomal protein L4
gi|109893579|sp|Q2YM04.1|RL4_BRUA2 RecName: Full=50S ribosomal protein L4
gi|166234640|sp|A5VR05.1|RL4_BRUO2 RecName: Full=50S ribosomal protein L4
gi|189029492|sp|A9M5P9.1|RL4_BRUC2 RecName: Full=50S ribosomal protein L4
gi|189029493|sp|B0CH31.1|RL4_BRUSI RecName: Full=50S ribosomal protein L4
gi|226730626|sp|B2S678.1|RL4_BRUA1 RecName: Full=50S ribosomal protein L4
gi|254803720|sp|C0RJK0.1|RL4_BRUMB RecName: Full=50S ribosomal protein L4
gi|23348069|gb|AAN30151.1| ribosomal protein L4 [Brucella suis 1330]
gi|62196275|gb|AAX74575.1| RplD, ribosomal protein L4 [Brucella abortus bv. 1 str. 9-941]
gi|82616167|emb|CAJ11210.1| Ribosomal protein L4/L1e [Brucella melitensis biovar Abortus 2308]
gi|82798166|gb|ABB91835.1| ribosomal protein L4 [Brucella abortus]
gi|82798168|gb|ABB91836.1| ribosomal protein L4 [Brucella abortus]
gi|82798170|gb|ABB91837.1| ribosomal protein L4 [Brucella abortus]
gi|82798172|gb|ABB91838.1| ribosomal protein L4 [Brucella abortus]
gi|82798174|gb|ABB91839.1| ribosomal protein L4 [Brucella abortus]
gi|82798176|gb|ABB91840.1| ribosomal protein L4 [Brucella abortus]
gi|82798178|gb|ABB91841.1| ribosomal protein L4 [Brucella abortus]
gi|82798180|gb|ABB91842.1| ribosomal protein L4 [Brucella canis]
gi|82798182|gb|ABB91843.1| ribosomal protein L4 [Brucella melitensis biovar Melitensis]
gi|82798184|gb|ABB91844.1| ribosomal protein L4 [Brucella melitensis biovar Melitensis]
gi|82798186|gb|ABB91845.1| ribosomal protein L4 [Brucella melitensis biovar Melitensis]
gi|82798188|gb|ABB91846.1| ribosomal protein L4 [Brucella neotomae 5K33]
gi|82798190|gb|ABB91847.1| ribosomal protein L4 [Brucella ovis]
gi|82798192|gb|ABB91848.1| ribosomal protein L4 [Brucella suis 1330]
gi|82798194|gb|ABB91849.1| ribosomal protein L4 [Brucella suis ATCC 23445]
gi|82798196|gb|ABB91850.1| ribosomal protein L4 [Brucella suis bv. 3 str. 686]
gi|82798198|gb|ABB91851.1| ribosomal protein L4 [Brucella suis bv. 4 str. 40]
gi|82798200|gb|ABB91852.1| ribosomal protein L4 [Brucella suis]
gi|82798202|gb|ABB91853.1| ribosomal protein L4 [Brucella pinnipedialis]
gi|82798204|gb|ABB91854.1| ribosomal protein L4 [Brucella ceti]
gi|148370659|gb|ABQ60638.1| ribosomal protein L4 [Brucella ovis ATCC 25840]
gi|161335999|gb|ABX62304.1| 50S ribosomal protein L4 [Brucella canis ATCC 23365]
gi|163674221|gb|ABY38332.1| 50S ribosomal protein L4 [Brucella suis ATCC 23445]
gi|189019953|gb|ACD72675.1| Ribosomal protein L4/L1e [Brucella abortus S19]
gi|225617707|gb|EEH14752.1| 50S ribosomal protein L4 [Brucella ceti str. Cudo]
gi|225641094|gb|ACO01008.1| 50S ribosomal protein L4 [Brucella melitensis ATCC 23457]
gi|237788949|gb|EEP63160.1| 50S ribosomal protein L4 [Brucella abortus str. 2308 A]
gi|260095741|gb|EEW79618.1| ribosomal protein L4 [Brucella abortus NCTC 8038]
gi|260151584|gb|EEW86678.1| ribosomal protein L4/L1e [Brucella melitensis bv. 1 str. 16M]
gi|260155757|gb|EEW90837.1| ribosomal protein L4/L1e [Brucella suis bv. 4 str. 40]
gi|260668509|gb|EEX55449.1| ribosomal protein L4 [Brucella abortus bv. 4 str. 292]
gi|260672449|gb|EEX59270.1| ribosomal protein L4 [Brucella abortus bv. 2 str. 86/8/59]
gi|260675083|gb|EEX61904.1| ribosomal protein L4 [Brucella abortus bv. 6 str. 870]
gi|260873512|gb|EEX80581.1| ribosomal protein L4 [Brucella abortus bv. 9 str. C68]
gi|260915836|gb|EEX82697.1| ribosomal protein L4 [Brucella abortus bv. 3 str. Tulya]
gi|260924669|gb|EEX91237.1| ribosomal protein L4 [Brucella ceti M13/05/1]
gi|261294765|gb|EEX98261.1| ribosomal protein L4 [Brucella ceti M644/93/1]
gi|261297089|gb|EEY00586.1| ribosomal protein L4 [Brucella pinnipedialis B2/94]
gi|261301299|gb|EEY04796.1| ribosomal protein L4 [Brucella neotomae 5K33]
gi|261303073|gb|EEY06570.1| ribosomal protein L4 [Brucella pinnipedialis M163/99/10]
gi|261738408|gb|EEY26404.1| ribosomal protein L4 [Brucella sp. F5/99]
gi|261742294|gb|EEY30220.1| ribosomal protein L4 [Brucella suis bv. 5 str. 513]
gi|261744953|gb|EEY32879.1| ribosomal protein L4 [Brucella suis bv. 3 str. 686]
gi|262766259|gb|EEZ12048.1| ribosomal protein L4 [Brucella melitensis bv. 3 str. Ether]
gi|263002093|gb|EEZ14668.1| ribosomal protein L4 [Brucella melitensis bv. 1 str. Rev.1]
gi|263093909|gb|EEZ17843.1| ribosomal protein L4 [Brucella melitensis bv. 2 str. 63/9]
gi|264661092|gb|EEZ31353.1| ribosomal protein L4 [Brucella pinnipedialis M292/94/1]
gi|297175707|gb|EFH35054.1| 50S ribosomal protein L4/L1 [Brucella abortus bv. 5 str. B3196]
gi|306275579|gb|EFM57311.1| 50S ribosomal protein L4 [Brucella inopinata BO1]
gi|306289701|gb|EFM60890.1| 50S ribosomal protein L4 [Brucella sp. BO2]
gi|326409254|gb|ADZ66319.1| Ribosomal protein L4/L1e [Brucella melitensis M28]
gi|326538962|gb|ADZ87177.1| 50S ribosomal protein L4 [Brucella melitensis M5-90]
gi|340559309|gb|AEK54547.1| 50S ribosomal protein L4 [Brucella pinnipedialis B2/94]
gi|343383077|gb|AEM18569.1| 50S ribosomal protein L4 [Brucella suis 1330]
gi|349743278|gb|AEQ08821.1| 50S ribosomal protein L4 [Brucella melitensis NI]
gi|358258502|gb|AEU06237.1| 50S ribosomal protein L4 [Brucella suis VBI22]
gi|363400644|gb|AEW17614.1| 50S ribosomal protein L4 [Brucella abortus A13334]
gi|363404723|gb|AEW15018.1| 50S ribosomal protein L4 [Brucella canis HSK A52141]
gi|374539530|gb|EHR11034.1| 50S ribosomal protein L4 [Brucella abortus bv. 1 str. NI474]
gi|374542905|gb|EHR14389.1| 50S ribosomal protein L4 [Brucella abortus bv. 1 str. NI435a]
gi|374543521|gb|EHR15003.1| 50S ribosomal protein L4 [Brucella abortus bv. 1 str. NI486]
gi|374545580|gb|EHR17041.1| 50S ribosomal protein L4 [Brucella abortus bv. 1 str. NI488]
gi|374548946|gb|EHR20393.1| 50S ribosomal protein L4 [Brucella abortus bv. 1 str. NI010]
gi|374549577|gb|EHR21020.1| 50S ribosomal protein L4 [Brucella abortus bv. 1 str. NI016]
gi|374558339|gb|EHR29732.1| 50S ribosomal protein L4 [Brucella abortus bv. 1 str. NI259]
gi|374559637|gb|EHR31022.1| 50S ribosomal protein L4 [Brucella abortus bv. 1 str. NI021]
Length = 206
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/204 (43%), Positives = 125/204 (61%), Gaps = 1/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ +T +D G + L ++F + R DI+ RVVRWQLA+RQQG+H + +VS TG K
Sbjct: 3 LTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTGSK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP R+H L KKVR LGL+ ALSA+A L
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVRALGLRHALSAKAKASDL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
++ +DL KTK +V+ + ++ + LL G I + A N+ ++VLP G+N
Sbjct: 123 IIIDDLASADAKTKQLVSQFAKL-GLENALLIGGAEIDANFQRAASNIPNIDVLPVQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL+ LV+S+ AV + +R
Sbjct: 182 VYDILRRGKLVLSKAAVEALEERF 205
>gi|39936312|ref|NP_948588.1| 50S ribosomal protein L4 [Rhodopseudomonas palustris CGA009]
gi|192292036|ref|YP_001992641.1| 50S ribosomal protein L4 [Rhodopseudomonas palustris TIE-1]
gi|46577158|sp|P61068.1|RL4_RHOPA RecName: Full=50S ribosomal protein L4; AltName: Full=RRP-L4
gi|226730715|sp|B3QBX9.1|RL4_RHOPT RecName: Full=50S ribosomal protein L4
gi|39650167|emb|CAE28690.1| 50S ribosomal protein L4 [Rhodopseudomonas palustris CGA009]
gi|192285785|gb|ACF02166.1| ribosomal protein L4/L1e [Rhodopseudomonas palustris TIE-1]
Length = 206
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 90/204 (44%), Positives = 128/204 (62%), Gaps = 1/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ VT ++ G + L+ ++F + R DII R V WQLAKRQ GTH K +EV TGKK
Sbjct: 3 LKVTTLEGKEAGSVQLSDEIFGLEPRSDIIQRCVIWQLAKRQAGTHKAKGRAEVWRTGKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTG ARHG+ R PQFRGG GP RSHAI L KKVR L L+ ALSA+A G L
Sbjct: 63 MYKQKGTGGARHGSQRVPQFRGGGRAFGPVVRSHAIDLPKKVRVLALRHALSAKAKGGGL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + E+ + KTK +V +++ + + L+ DG ++ A +N+ ++VLP G+N
Sbjct: 123 IVLDKAELEAAKTKTLVGHFSGL-GLESALIIDGAEVNNGFAAAARNIPNIDVLPVQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL+ LV+++ AV+ + R
Sbjct: 182 VYDILRRKKLVLTKAAVDALEARF 205
>gi|75675557|ref|YP_317978.1| 50S ribosomal protein L4 [Nitrobacter winogradskyi Nb-255]
gi|109893613|sp|Q3SSW5.1|RL4_NITWN RecName: Full=50S ribosomal protein L4
gi|74420427|gb|ABA04626.1| LSU ribosomal protein L4P [Nitrobacter winogradskyi Nb-255]
Length = 206
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 89/206 (43%), Positives = 128/206 (62%), Gaps = 1/206 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + VT + G + L+ +F + RKD+I R V WQLAK Q GTH TK +E+ TG
Sbjct: 1 MELNVTTLEGKAAGSVHLSDGIFGLEPRKDLIQRCVNWQLAKSQAGTHKTKGRAEIWRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP RSHA L KKVR L L+ ALSA+A +G
Sbjct: 61 KKLFKQKGTGNARHGSARAPQFRGGGRAFGPVVRSHAHDLPKKVRALALRHALSAKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
L+V + +E+ KTK ++ +++ + T L+ DG +H A +N+ ++VLP G
Sbjct: 121 GLIVIDSVELKEAKTKALMGHFSSLGLT-SALIIDGAQVHAGFATAARNIPNIDVLPIQG 179
Query: 279 LNVYSILQHDTLVMSRDAVNKIVDRM 304
+NVY IL+ LV+++ AV+ + R
Sbjct: 180 INVYDILRRQKLVLTKAAVDALEARF 205
>gi|86357306|ref|YP_469198.1| 50S ribosomal protein L4 [Rhizobium etli CFN 42]
gi|417103119|ref|ZP_11960977.1| 50S ribosomal protein L4 [Rhizobium etli CNPAF512]
gi|109893627|sp|Q2K9L5.1|RL4_RHIEC RecName: Full=50S ribosomal protein L4
gi|86281408|gb|ABC90471.1| 50S ribosomal protein L4 [Rhizobium etli CFN 42]
gi|327191387|gb|EGE58413.1| 50S ribosomal protein L4 [Rhizobium etli CNPAF512]
Length = 206
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 89/206 (43%), Positives = 126/206 (61%), Gaps = 1/206 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + V +D G + L+ ++F + R+DI+ RV+RWQLAK+QQGTH K +EVS TG
Sbjct: 1 MELNVKTLEGKDAGKVSLSDEIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
K ++QKGTGRARH + R PQFRGG HGP RSH L KKVR LGL+ ALSA+
Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLRHALSAKIKAD 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
++V ++L KTK + + + + T L G + KLA QN+ ++VLP G
Sbjct: 121 DVIVIDNLVAAEAKTKALASAFETLGLT-NALFIGGAELDGNFKLAAQNIPNIDVLPIQG 179
Query: 279 LNVYSILQHDTLVMSRDAVNKIVDRM 304
+NVY I++ LV+S+ AV + +R
Sbjct: 180 INVYDIVRRGKLVLSKAAVEALEERF 205
>gi|222148367|ref|YP_002549324.1| 50S ribosomal protein L4 [Agrobacterium vitis S4]
gi|254803708|sp|B9JVN8.1|RL4_AGRVS RecName: Full=50S ribosomal protein L4
gi|221735355|gb|ACM36318.1| 50S ribosomal protein L4 [Agrobacterium vitis S4]
Length = 206
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/201 (45%), Positives = 122/201 (60%), Gaps = 1/201 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V D G + L+ +F + R+DII R+VRWQLAK+QQGTH TKT +EVS TG K +
Sbjct: 5 VKTLEGTDAGTVSLSDAIFGLEPRQDIIARMVRWQLAKKQQGTHKTKTRAEVSRTGAKMY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
+QKGTGRARH + R PQFRGG HGP RSH L KKVR L L+ ALSA+ +L++
Sbjct: 65 KQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALALRHALSAKFKADELII 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
+ L KTK V + + K L+ G + KLA N+ ++VLP G+NVY
Sbjct: 125 VDQLVAADAKTKAAVGVFEAL-GLKNALVIGGVELDVNFKLAAANIPNIDVLPVQGINVY 183
Query: 283 SILQHDTLVMSRDAVNKIVDR 303
IL+ LV+S+ AV + +R
Sbjct: 184 DILRRGKLVLSKAAVEALEER 204
>gi|218672011|ref|ZP_03521680.1| 50S ribosomal protein L4 [Rhizobium etli GR56]
Length = 206
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 89/206 (43%), Positives = 126/206 (61%), Gaps = 1/206 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + V +D G + L+ ++F + R+DI+ RV+RWQLAK+QQGTH K +EVS TG
Sbjct: 1 MELNVKTLEGKDAGKVSLSDEIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
K ++QKGTGRARH + R PQFRGG HGP RSH L KKVR LGL+ ALSA+
Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLRHALSAKIKAD 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
++V ++L KTK + + + + T L G + KLA QN+ ++VLP G
Sbjct: 121 DVIVIDNLVAAEAKTKALASVFETLGLT-NALFIGGAELDGNFKLAAQNIPNIDVLPIQG 179
Query: 279 LNVYSILQHDTLVMSRDAVNKIVDRM 304
+NVY I++ LV+S+ AV + +R
Sbjct: 180 INVYDIVRRGKLVLSKAAVEALEERF 205
>gi|149184312|ref|ZP_01862630.1| 50S ribosomal protein L4 [Erythrobacter sp. SD-21]
gi|148831632|gb|EDL50065.1| 50S ribosomal protein L4 [Erythrobacter sp. SD-21]
Length = 207
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/207 (44%), Positives = 128/207 (61%), Gaps = 1/207 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + V + G + L DVF V R DI+HRVV WQL R+ T+ S+V+ TG
Sbjct: 1 MKVKVQKIDGKASGDIELNDDVFGVEPRADILHRVVTWQLENRRGTARPTRERSDVARTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK RQKG G ARHG P F GG HG + R LNKK+R LGLK+ALS++A +G
Sbjct: 61 KKFGRQKGGGTARHGDRGAPIFIGGGKAHGARKRDFEQSLNKKIRALGLKMALSSKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
L+V + LE+ KTK + ++++ + KVL+ DG +++ K A NL VNVLP++G
Sbjct: 121 -LVVVDSLELKDAKTKALKGHFDKNGWSGKVLIIDGESVNDGFKKAAGNLPGVNVLPAMG 179
Query: 279 LNVYSILQHDTLVMSRDAVNKIVDRMH 305
NVY IL+HDTLV+++DAV K+ R +
Sbjct: 180 ANVYDILKHDTLVLTKDAVEKLEGRFN 206
>gi|148256391|ref|YP_001240976.1| 50S ribosomal protein L4 [Bradyrhizobium sp. BTAi1]
gi|166234638|sp|A5ELM6.1|RL4_BRASB RecName: Full=50S ribosomal protein L4
gi|146408564|gb|ABQ37070.1| LSU ribosomal protein L4P [Bradyrhizobium sp. BTAi1]
Length = 206
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 89/206 (43%), Positives = 128/206 (62%), Gaps = 1/206 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + VT +D G + L+ +F + R DII R V+WQL KRQ GTH K +E+ TG
Sbjct: 1 MELKVTTLEGKDAGSVQLSDAIFGLEPRVDIIQRCVQWQLNKRQAGTHKAKGRAEIWRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP RSHA L KKVR L LK ALSA+A +G
Sbjct: 61 KKMYKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHATDLPKKVRALALKHALSAKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
L+V E+ + + KTK ++ +++ + T L+ DG +H A +N+ ++VLP G
Sbjct: 121 DLVVLENATLEAAKTKALIGHFSGLGLT-NALIIDGAELHNGFAAAARNIPNLDVLPIQG 179
Query: 279 LNVYSILQHDTLVMSRDAVNKIVDRM 304
+NVY IL+ LV+++ A++ + R
Sbjct: 180 INVYDILRRQKLVLTKAAIDALEARF 205
>gi|49474403|ref|YP_032445.1| 50S ribosomal protein L4 [Bartonella quintana str. Toulouse]
gi|81646966|sp|Q6FZC3.1|RL4_BARQU RecName: Full=50S ribosomal protein L4
gi|49239907|emb|CAF26305.1| 50s ribosomal protein l4 [Bartonella quintana str. Toulouse]
Length = 206
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/207 (43%), Positives = 130/207 (62%), Gaps = 3/207 (1%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
DLVI + + G + ++ +F + R+DI+ RVVRWQLA+ QQGTH ++ S+VS T
Sbjct: 2 DLVIRTLD--GNEAGRLKVSESIFGLVPREDILQRVVRWQLARHQQGTHHSQGRSDVSRT 59
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G K ++QKGTGRARH + R PQFRGG HGP RSHA L KK+R LGL++ALSA+
Sbjct: 60 GAKMFKQKGTGRARHSSARAPQFRGGGKAHGPVVRSHAHDLPKKIRVLGLRLALSAKLKA 119
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
L++ ++L V KTK +V+ ++++ K LL G I A N+ +++LP
Sbjct: 120 NDLIIVDELNVKEAKTKMLVSCFSKL-GFKNALLVGGKEIDINFSRAASNIPNIDILPIQ 178
Query: 278 GLNVYSILQHDTLVMSRDAVNKIVDRM 304
G+NVY IL+ LV+S+ AV + +R
Sbjct: 179 GINVYDILRRSKLVLSKAAVEALEERF 205
>gi|349699373|ref|ZP_08901002.1| 50S ribosomal protein L4 [Gluconacetobacter europaeus LMG 18494]
Length = 204
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/202 (44%), Positives = 119/202 (58%), Gaps = 3/202 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+ N G L ++F R DI+ RVV WQLAKR+ GTH K + E+SGT KKP+
Sbjct: 5 IKTLDNGSAGKASLPDEIFAATPRTDIMARVVHWQLAKRRAGTHKVKGMGEISGTTKKPY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQKGTG AR G+LR PQ+R G +HGP R H L KKVRRLGL ALS +AAEGKL+V
Sbjct: 65 RQKGTGSARQGSLRSPQYRTGGVVHGPVVRDHGYDLPKKVRRLGLISALSQKAAEGKLVV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
D S K+ + + T L+ D + E A +NL +++LP++G NVY
Sbjct: 125 L-DAATASGKSAELAKKLKVLGWT-SALIVD-AAVEENFGRAARNLPKIDILPTIGANVY 181
Query: 283 SILQHDTLVMSRDAVNKIVDRM 304
IL HD L ++R V + +R+
Sbjct: 182 DILNHDVLAITRAGVEGLKERL 203
>gi|395789499|ref|ZP_10469019.1| 50S ribosomal protein L4 [Bartonella taylorii 8TBB]
gi|395430042|gb|EJF96094.1| 50S ribosomal protein L4 [Bartonella taylorii 8TBB]
Length = 206
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/206 (43%), Positives = 130/206 (63%), Gaps = 3/206 (1%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
DLVI + + G + ++ +F + R+DI+ RV+ WQLA+RQQGTH ++ S+VS T
Sbjct: 2 DLVIKTLD--GNEAGKLKVSEAIFGLVPREDILQRVILWQLARRQQGTHQSQGRSDVSRT 59
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G K ++QKGTGRARH + R PQFRGG HGP RSHA L KK+R LGL++ALSA+
Sbjct: 60 GAKMFKQKGTGRARHSSARAPQFRGGGKAHGPVTRSHAHDLPKKIRALGLRLALSAKLKA 119
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
L+V + L V KTK +V++++++ LL G I A N+ V++LP
Sbjct: 120 KDLIVVDALSVKDAKTKMLVSHFSKL-GIDNALLIGGKEIDINFSRAASNIPNVDILPIQ 178
Query: 278 GLNVYSILQHDTLVMSRDAVNKIVDR 303
G+NVY IL+ LV+S++AV + +R
Sbjct: 179 GINVYDILRRSKLVLSKEAVEFLEER 204
>gi|158424177|ref|YP_001525469.1| 50S ribosomal protein L4 [Azorhizobium caulinodans ORS 571]
gi|158331066|dbj|BAF88551.1| ribosomal protein L4/L1e [Azorhizobium caulinodans ORS 571]
Length = 207
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/203 (43%), Positives = 123/203 (60%), Gaps = 1/203 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + G + L+ +F + R DI+HR+V WQLA+RQ GTH TK SE++ T KK
Sbjct: 4 LTVKTLDGAEAGSIQLSDAIFGLEPRADILHRMVTWQLARRQAGTHRTKGRSEINRTSKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTG ARHG PQFRGG GP RSHA L KKVR L LK ALS++A ++
Sbjct: 64 LYKQKGTGNARHGAASAPQFRGGGRAFGPVVRSHAFDLPKKVRALALKHALSSKAKAEQI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + + KTK + + ++ VL+ DG + LA +NL V+VLP G+N
Sbjct: 124 IVLDAATLTDAKTKALKERFEKL-GIASVLVVDGEQVATNFALAARNLASVDVLPVQGIN 182
Query: 281 VYSILQHDTLVMSRDAVNKIVDR 303
VY IL+ DTLV++R AV+ + R
Sbjct: 183 VYDILRRDTLVLTRAAVDALEAR 205
>gi|153009287|ref|YP_001370502.1| 50S ribosomal protein L4 [Ochrobactrum anthropi ATCC 49188]
gi|404318989|ref|ZP_10966922.1| 50S ribosomal protein L4 [Ochrobactrum anthropi CTS-325]
gi|166234695|sp|A6X0B9.1|RL4_OCHA4 RecName: Full=50S ribosomal protein L4
gi|151561175|gb|ABS14673.1| ribosomal protein L4/L1e [Ochrobactrum anthropi ATCC 49188]
Length = 206
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/204 (43%), Positives = 125/204 (61%), Gaps = 1/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ +T +D G + L ++F + R DI+ RVVRWQLA+RQQG+H + +VS TG K
Sbjct: 3 LTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP RSH L KKVR LGL+ ALSA+A L
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGQAHGPVVRSHDHDLPKKVRALGLRHALSAKAKASDL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
++ +DL KTK +V+ + ++ + L+ G I + A N+ ++VLP G+N
Sbjct: 123 IIIDDLAATEAKTKQLVSQFAKL-GLENALVIGGAEIDVNFQRAASNIPNIDVLPVQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL+ LV+S+ AV + +R
Sbjct: 182 VYDILRRGKLVLSKAAVEALEERF 205
>gi|218460209|ref|ZP_03500300.1| 50S ribosomal protein L4 [Rhizobium etli Kim 5]
Length = 206
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/206 (43%), Positives = 126/206 (61%), Gaps = 1/206 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + V +D G + L+ ++F + R+DI+ RV+RWQLAK+QQGTH K +EVS TG
Sbjct: 1 MELNVKTLEGKDAGKVSLSDEIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
K ++QKGTGRARH + R PQFRGG HGP RSH L KKVR LGL+ ALSA+
Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLRHALSAKIKAD 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
++V ++L KTK + + + + T L G + KLA QN+ ++VLP G
Sbjct: 121 DVIVIDNLIAAEAKTKALASAFETLGLT-NALFIGGAELDGNFKLAAQNIPNIDVLPIQG 179
Query: 279 LNVYSILQHDTLVMSRDAVNKIVDRM 304
+NVY I++ LV+S+ AV + +R
Sbjct: 180 INVYDIVRRGKLVLSKAAVEALEERF 205
>gi|116748991|ref|YP_845678.1| 50S ribosomal protein L4 [Syntrophobacter fumaroxidans MPOB]
gi|166199918|sp|A0LIJ1.1|RL4_SYNFM RecName: Full=50S ribosomal protein L4
gi|116698055|gb|ABK17243.1| LSU ribosomal protein L4P [Syntrophobacter fumaroxidans MPOB]
Length = 207
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 86/203 (42%), Positives = 134/203 (66%), Gaps = 5/203 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + FN ++ G + L+ VF VP+R ++H VV +QLAKR+ GT TK S+V+G
Sbjct: 1 MPTVDIFNTNRDVVGQLELSDAVFAVPLRPHVLHEVVLYQLAKRRAGTVKTKGRSDVAGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
GKKPWRQKGTGRAR GT R P +RGG T+HGP+PR + +++ KKVRRL +K+ALS + +
Sbjct: 61 GKKPWRQKGTGRARAGTSRSPIWRGGGTIHGPQPRDYEMRIPKKVRRLAVKMALSQKLID 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+L V + L++ KT+ ++ E +K +++ EKL+ + +N+ V VL +
Sbjct: 121 RELTVLDQLQLEQIKTRDFAAILDRFELSKTLVVI--AQPDEKLQKSARNIPNVKVLRTE 178
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
GLNVY +L H +++++R+ + KI
Sbjct: 179 GLNVYDLLNHRSVLLTRETIGKI 201
>gi|451942180|ref|YP_007462817.1| 50S ribosomal protein L4 [Bartonella vinsonii subsp. berkhoffii
str. Winnie]
gi|451901567|gb|AGF76029.1| 50S ribosomal protein L4 [Bartonella vinsonii subsp. berkhoffii
str. Winnie]
Length = 207
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/206 (43%), Positives = 129/206 (62%), Gaps = 3/206 (1%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
DL++ + + G + ++ +F + R+DI+ RV+RWQLA+RQQGTH ++ S+VS T
Sbjct: 3 DLIVKTLD--GNEAGKLKVSEGIFGLVPREDILQRVIRWQLARRQQGTHQSQGRSDVSRT 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G K ++QKGTGRARH + R PQFRGG HGP RSHA L KKVR LG+++ALSA+
Sbjct: 61 GAKMFKQKGTGRARHSSARVPQFRGGGKAHGPVFRSHACDLPKKVRALGVRLALSAKLKA 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
L+V +DL V KTK +V+ ++++ LL I A N+ ++VLP
Sbjct: 121 NDLIVVDDLSVKDAKTKMLVSSFSKL-GFNNALLVGSKEIDVNFSRAASNIPNIDVLPIQ 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKIVDR 303
G+NVY IL+ LV+S+ AV + +R
Sbjct: 180 GINVYDILRRSKLVLSKAAVEALEER 205
>gi|146340058|ref|YP_001205106.1| 50S ribosomal protein L4 [Bradyrhizobium sp. ORS 278]
gi|365885437|ref|ZP_09424438.1| 50S ribosomal subunit protein L4 [Bradyrhizobium sp. ORS 375]
gi|365889689|ref|ZP_09428356.1| 50S ribosomal subunit protein L4 [Bradyrhizobium sp. STM 3809]
gi|367474530|ref|ZP_09474031.1| 50S ribosomal subunit protein L4 [Bradyrhizobium sp. ORS 285]
gi|166234639|sp|A4YSJ3.1|RL4_BRASO RecName: Full=50S ribosomal protein L4
gi|146192864|emb|CAL76869.1| 50S ribosomal subunit protein L4 [Bradyrhizobium sp. ORS 278]
gi|365273167|emb|CCD86499.1| 50S ribosomal subunit protein L4 [Bradyrhizobium sp. ORS 285]
gi|365285917|emb|CCD96969.1| 50S ribosomal subunit protein L4 [Bradyrhizobium sp. ORS 375]
gi|365334554|emb|CCE00887.1| 50S ribosomal subunit protein L4 [Bradyrhizobium sp. STM 3809]
Length = 206
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/206 (42%), Positives = 128/206 (62%), Gaps = 1/206 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + VT ++ G + L+ +F + R DII R V+WQL KRQ GTH K +E+ TG
Sbjct: 1 MELKVTTLEGKEAGSVQLSDAIFGLEPRADIIQRCVQWQLNKRQAGTHKAKGRAEIWRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP RSHA L KKVR L LK ALSA+A +G
Sbjct: 61 KKMYKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHATDLPKKVRALALKHALSAKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
L+V E+ + + KTK ++ +++ + T L+ DG +H A +N+ ++VLP G
Sbjct: 121 DLVVLENATLEAAKTKALIGHFSGLGLT-NALIIDGAELHNGFAAAARNIPNLDVLPIQG 179
Query: 279 LNVYSILQHDTLVMSRDAVNKIVDRM 304
+NVY IL+ LV+++ A++ + R
Sbjct: 180 INVYDILRRQKLVLTKAAIDALEARF 205
>gi|294852569|ref|ZP_06793242.1| 50S ribosomal protein L4/L1 [Brucella sp. NVSL 07-0026]
gi|294821158|gb|EFG38157.1| 50S ribosomal protein L4/L1 [Brucella sp. NVSL 07-0026]
Length = 206
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 87/203 (42%), Positives = 125/203 (61%), Gaps = 1/203 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ +T +D G + L ++F + R DI+ RVVRWQLA+RQQG+H + +VS TG K
Sbjct: 3 LTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTGSK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP R+H L KKVR LGL+ ALSA+A L
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVRALGLRHALSAKAKASDL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
++ +DL KTK +V+ + ++ + LL G I + A N+ +++LP G+N
Sbjct: 123 IIIDDLASADAKTKQLVSQFAKL-GLENALLIGGAEIDANFQRAASNIPNIDMLPVQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDR 303
VY IL+ LV+S+ AV + +R
Sbjct: 182 VYDILRRGKLVLSKAAVEALEER 204
>gi|354593427|ref|ZP_09011470.1| 50S ribosomal protein L4 [Commensalibacter intestini A911]
gi|353672538|gb|EHD14234.1| 50S ribosomal protein L4 [Commensalibacter intestini A911]
Length = 204
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 87/204 (42%), Positives = 123/204 (60%), Gaps = 3/204 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N G + L ++F+V R DI+ RVV WQLAKR+ GTH K EVSGT KK
Sbjct: 3 VEIKTLDNGSVGNITLPAELFEVQPRADIMARVVHWQLAKRRAGTHKVKGRGEVSGTTKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQKGTG AR G+LRGP FR G +HGP R H L K++RRLGL ALS + +EGKL
Sbjct: 63 PFRQKGTGNARQGSLRGPHFRTGGVVHGPVVRDHGYSLPKQIRRLGLISALSQKLSEGKL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + + + ++ K L+ D + E A +N+H V++LP++G N
Sbjct: 123 VVIDQANGVAKTAELAAKL--KVLGWKSALIVD-TAVDENFGHAVRNIHSVDILPTIGAN 179
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL H+ L ++R AV+ + +R+
Sbjct: 180 VYDILNHEVLAITRAAVDGLKERL 203
>gi|87199271|ref|YP_496528.1| 50S ribosomal protein L4 [Novosphingobium aromaticivorans DSM
12444]
gi|109893614|sp|Q2G8X9.1|RL4_NOVAD RecName: Full=50S ribosomal protein L4
gi|87134952|gb|ABD25694.1| LSU ribosomal protein L4P [Novosphingobium aromaticivorans DSM
12444]
Length = 207
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 93/195 (47%), Positives = 126/195 (64%), Gaps = 2/195 (1%)
Query: 111 KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRA 170
KG + L+ DVF + R DI+HRVV WQL R+ + S+V+ TGKK RQKG G A
Sbjct: 14 KGEVELSDDVFGLEPRADILHRVVTWQLENRRGIARKARERSDVARTGKKFGRQKGGGTA 73
Query: 171 RHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPS 230
RHG + P F GG HGP+ R I LNKKVR LGLK+ALS++A G L+V ++L+V +
Sbjct: 74 RHGDRKAPIFIGGGKAHGPRVREFNISLNKKVRALGLKMALSSKAKAG-LVVVDNLDVDA 132
Query: 231 HKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTL 290
KTK +V + KKVL+ DG +++ A +N+ VNVLP++G NVY IL+HDTL
Sbjct: 133 -KTKALVGQLAKANWGKKVLVIDGEGVNDNFAKAARNIVGVNVLPAIGANVYDILKHDTL 191
Query: 291 VMSRDAVNKIVDRMH 305
V++R AV K+ R +
Sbjct: 192 VLTRAAVEKLEARFN 206
>gi|85715130|ref|ZP_01046114.1| 50S ribosomal protein L4 [Nitrobacter sp. Nb-311A]
gi|85698045|gb|EAQ35918.1| 50S ribosomal protein L4 [Nitrobacter sp. Nb-311A]
Length = 206
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/206 (42%), Positives = 128/206 (62%), Gaps = 1/206 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + +T + G + L+ +F + RKD+I R V WQLAKRQ GT TK +E+ TG
Sbjct: 1 MELNITTLEGKAAGSVQLSDGIFGLEPRKDLIQRCVNWQLAKRQAGTRKTKGRAEIWRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP RSHA L KKVR L L+ ALSA+A +G
Sbjct: 61 KKLFKQKGTGNARHGSARAPQFRGGGRAFGPVVRSHAHDLPKKVRALALRHALSAKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
L+V + +E+ KTK ++ +++ + T L+ DG +H A +N+ ++VLP G
Sbjct: 121 GLIVIDSVELKEAKTKALMGHFSGLGLT-SALIVDGAQVHAGFATAARNIPNIDVLPIQG 179
Query: 279 LNVYSILQHDTLVMSRDAVNKIVDRM 304
+NVY IL+ LV+++ AV+ + R
Sbjct: 180 INVYDILRRQKLVLTKAAVDALEARF 205
>gi|296282583|ref|ZP_06860581.1| 50S ribosomal protein L4 [Citromicrobium bathyomarinum JL354]
Length = 207
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 91/207 (43%), Positives = 127/207 (61%), Gaps = 1/207 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ I V G + L VF V R DI+HRVV WQL KR+ T+ S+V+ TG
Sbjct: 1 MKIAVQKIDGGKAGEIELNDAVFGVEPRADILHRVVTWQLEKRRGTARPTRERSDVARTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK RQKG+G ARHG P F GG HG + R LNKK+R LGL++ALS++A +G
Sbjct: 61 KKFGRQKGSGGARHGDRGAPIFIGGGKAHGARKRDFDPSLNKKIRSLGLRMALSSKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
L++ + LE+ KTK + ++ + KVL+ DG +++ K+A NL VNV+P+VG
Sbjct: 121 -LVIVDSLELKDAKTKALKGHFEKAGFNGKVLVIDGESVNDGFKMAAGNLPGVNVIPAVG 179
Query: 279 LNVYSILQHDTLVMSRDAVNKIVDRMH 305
NVY IL+HDTLV+++DAV K+ R +
Sbjct: 180 ANVYDILKHDTLVLTKDAVEKLEARFN 206
>gi|316933528|ref|YP_004108510.1| 50S ribosomal protein L4 [Rhodopseudomonas palustris DX-1]
gi|315601242|gb|ADU43777.1| ribosomal protein L4/L1e [Rhodopseudomonas palustris DX-1]
Length = 206
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 90/204 (44%), Positives = 127/204 (62%), Gaps = 1/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ VT + G + L+ ++F + R DII R V WQLAKRQ GTH K +EV TGKK
Sbjct: 3 LKVTTLEGNEAGSVQLSDEIFGLEPRTDIIQRCVIWQLAKRQAGTHKAKGRAEVWRTGKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTG ARHG+ R PQFRGG GP RSHAI L KKVR L L+ ALSA+A G L
Sbjct: 63 MYKQKGTGGARHGSQRVPQFRGGGRAFGPVVRSHAIDLPKKVRVLALRHALSAKAKGGGL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + E+ + KTK +V +++ + + L+ DG ++ A +N+ ++VLP G+N
Sbjct: 123 IVLDKAELEAAKTKTLVGHFSGL-GLESALIVDGAEVNTGFAAAARNIPNIDVLPIQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL+ LV+++ AV+ + R
Sbjct: 182 VYDILRRKKLVLTKAAVDALEARF 205
>gi|265984290|ref|ZP_06097025.1| ribosomal protein L4 [Brucella sp. 83/13]
gi|306838042|ref|ZP_07470900.1| 50S ribosomal protein L4 [Brucella sp. NF 2653]
gi|264662882|gb|EEZ33143.1| ribosomal protein L4 [Brucella sp. 83/13]
gi|306406966|gb|EFM63187.1| 50S ribosomal protein L4 [Brucella sp. NF 2653]
Length = 206
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/204 (43%), Positives = 124/204 (60%), Gaps = 1/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ +T +D G + L ++F + R DI+ RVVRWQLA RQQG+H + +VS TG K
Sbjct: 3 LTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLAHRQQGSHKAQGRGDVSRTGSK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP R+H L KKVR LGL+ ALSA+A L
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVRALGLRHALSAKAKASDL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
++ +DL KTK +V+ + ++ + LL G I + A N+ ++VLP G+N
Sbjct: 123 IIIDDLASADAKTKQLVSQFAKL-GLENALLIGGAEIDANFQRAASNIPNIDVLPVQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL+ LV+S+ AV + +R
Sbjct: 182 VYDILRRGKLVLSKAAVEALEERF 205
>gi|393724013|ref|ZP_10343940.1| 50S ribosomal protein L4 [Sphingomonas sp. PAMC 26605]
Length = 208
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 86/187 (45%), Positives = 114/187 (60%)
Query: 119 DVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGP 178
+VF + R DI+HRVV WQL KR+ T+ S+V+ TGKK RQKG G ARHG R P
Sbjct: 21 EVFGLDPRADILHRVVTWQLEKRRATASGTRERSDVARTGKKFGRQKGGGTARHGDRRAP 80
Query: 179 QFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVN 238
F GG HG + R LNKK+R LGLK+ALS A G L+V + L V +KTK ++
Sbjct: 81 IFVGGGKAHGQRTRDFNPGLNKKIRALGLKMALSTHAQAGTLVVMDSLGVAENKTKTLIA 140
Query: 239 YYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVN 298
+ ++ K L+ DG + LA NLH +NV+P+ G NVY IL+HDTLV++R AV
Sbjct: 141 DWAKLGTGKTALVIDGDMVDTSFALAAGNLHTINVMPAAGANVYDILKHDTLVLTRAAVE 200
Query: 299 KIVDRMH 305
+ R +
Sbjct: 201 MLEARFN 207
>gi|353328464|ref|ZP_08970791.1| 50S ribosomal protein L4 [Wolbachia endosymbiont wVitB of Nasonia
vitripennis]
gi|373449860|ref|ZP_09541953.1| 50S ribosomal subunit protein L4 [Wolbachia pipientis wAlbB]
gi|371932905|emb|CCE76940.1| 50S ribosomal subunit protein L4 [Wolbachia pipientis wAlbB]
Length = 204
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 85/202 (42%), Positives = 126/202 (62%), Gaps = 3/202 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+ + N + G + L +F + I+H +VRWQLAKR+ G H TK IS+VSGT KP+
Sbjct: 5 LVDLSNNNVGSVELNPLIFSAKQKLSILHDIVRWQLAKRRVGAHKTKGISDVSGTTAKPY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
QK TGRAR G+LR PQFRGG + GP RSHA LNKKVR+ GLKIALS + +++V
Sbjct: 65 GQKRTGRARQGSLRSPQFRGGGIIFGPVVRSHAYSLNKKVRKFGLKIALSLKYLNNQVIV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
+ L V KT + Y + + +++ D G + L A +NLHYV+++ +GLNV+
Sbjct: 125 LDSLNVDVKKTSKMCEYIKNFKFSSFLIVGDYG---DDLLRAAKNLHYVDLIKPIGLNVF 181
Query: 283 SILQHDTLVMSRDAVNKIVDRM 304
IL H+ +++++D + + R+
Sbjct: 182 DILNHECVMLTKDTLKHLEGRL 203
>gi|303246994|ref|ZP_07333270.1| ribosomal protein L4/L1e [Desulfovibrio fructosovorans JJ]
gi|302491701|gb|EFL51584.1| ribosomal protein L4/L1e [Desulfovibrio fructosovorans JJ]
Length = 210
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 87/204 (42%), Positives = 131/204 (64%), Gaps = 2/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + ++ G + LA +VF+V ++ +++H VVR QLA ++ GTHS KT S VSG GKK
Sbjct: 4 VKVYDQGRQEIGDVELAPEVFEVEVQPELLHLVVRAQLAAKRAGTHSVKTRSTVSGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G+ R P +RGG +HGP+PR + K+N+KVR L L++ALSA+ + L
Sbjct: 64 PWRQKGTGRARAGSTRSPIWRGGAIVHGPQPRDYGFKVNRKVRLLALRMALSAKLGDDSL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
++ + L VP KTK + + K +++ L+L+ +NL + V+ LN
Sbjct: 124 VLVDALSVPEVKTKHMAKVTSDFGLKKALIVLPAS--DNNLELSARNLPGIKVVREDMLN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY +L+HD LVM +DA K+ +R+
Sbjct: 182 VYDVLRHDHLVMVKDAALKVQERL 205
>gi|407800499|ref|ZP_11147359.1| 50S ribosomal protein L4 [Oceaniovalibus guishaninsula JLT2003]
gi|407057418|gb|EKE43394.1| 50S ribosomal protein L4 [Oceaniovalibus guishaninsula JLT2003]
Length = 206
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 87/206 (42%), Positives = 122/206 (59%), Gaps = 1/206 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + V + G + L ++F + R DI+HRVVRWQ QQGTH KT SE S +
Sbjct: 1 MKLDVITLDGGNAGSVDLGDEIFGLEPRADILHRVVRWQRNNAQQGTHKVKTRSETSYST 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK +RQKGTG ARHG P FR G GP PRSH L KK R+LGL+ ALS++AA G
Sbjct: 61 KKIYRQKGTGGARHGDRNAPIFRKGGVYKGPTPRSHGHDLTKKFRKLGLRHALSSKAATG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
L+V + +++ KT + +M K+ L+ DG ++E A N+ ++VLPS+G
Sbjct: 121 NLVVLDSIDMAEAKTGALAKSIAKM-GWKRALIIDGAAVNENFARAAANIEGLDVLPSMG 179
Query: 279 LNVYSILQHDTLVMSRDAVNKIVDRM 304
NVY IL+ DTLV+++ V + R+
Sbjct: 180 ANVYDILKRDTLVITKAGVEALEARL 205
>gi|148554273|ref|YP_001261855.1| 50S ribosomal protein L4 [Sphingomonas wittichii RW1]
gi|166199910|sp|A5V601.1|RL4_SPHWW RecName: Full=50S ribosomal protein L4
gi|148499463|gb|ABQ67717.1| LSU ribosomal protein L4P [Sphingomonas wittichii RW1]
Length = 208
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 88/194 (45%), Positives = 123/194 (63%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +VF V R DI+ RVV+WQL R+ + + S+V+ TGKK RQKG G AR
Sbjct: 14 GDIELNDEVFAVEPRADILARVVQWQLHNRRAPARAARERSDVARTGKKFGRQKGGGTAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG R P F GG HGP+ R LNKKVR LGLK+ALS++A +GKL+V + LE+
Sbjct: 74 HGDRRAPVFIGGGKAHGPRARVFESSLNKKVRALGLKMALSSKAKDGKLVVVDTLELKDA 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KTK ++ ++ L+ DG + +LA+ N+H +NVLP++G NVY IL+H+TLV
Sbjct: 134 KTKALIAKIGKLGFGATALVIDGEAVDNGFQLASSNIHTINVLPAIGANVYDILKHETLV 193
Query: 292 MSRDAVNKIVDRMH 305
++R AV K+ R +
Sbjct: 194 LTRAAVEKLEARFN 207
>gi|73667227|ref|YP_303243.1| 50S ribosomal protein L4 [Ehrlichia canis str. Jake]
gi|109893593|sp|Q3YRL0.1|RL4_EHRCJ RecName: Full=50S ribosomal protein L4
gi|72394368|gb|AAZ68645.1| LSU ribosomal protein L4P [Ehrlichia canis str. Jake]
Length = 205
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 86/204 (42%), Positives = 129/204 (63%), Gaps = 2/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N ++ G + L +F V R DI+ VV WQL+KR+ GTH KTI ++SGT K
Sbjct: 3 VSIINVNSDKIGTIDLNPLIFSVDYRPDILKMVVNWQLSKRRAGTHKAKTIGDISGTTAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQK TGRAR G+LR PQFRGG + GP R+HA LNKKVR+LGLK+ALS + + KL
Sbjct: 63 PYRQKHTGRARQGSLRSPQFRGGAVIFGPVVRNHAYSLNKKVRKLGLKVALSLKNSCNKL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
L+ + ++V KT ++ + E+ K L+ D ++ + + +NLH V +L +G N
Sbjct: 123 LILDSIDVNFVKTTQVLQFIRNFEH-KSFLIIDKD-YNKNVVCSCRNLHNVTLLKQIGTN 180
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
V IL+HD ++++ AV + +R+
Sbjct: 181 VLDILRHDCIILTVGAVKYLEERL 204
>gi|424894638|ref|ZP_18318212.1| 50S ribosomal protein L4, bacterial/organelle [Rhizobium
leguminosarum bv. trifolii WSM2297]
gi|393178865|gb|EJC78904.1| 50S ribosomal protein L4, bacterial/organelle [Rhizobium
leguminosarum bv. trifolii WSM2297]
Length = 206
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 89/202 (44%), Positives = 123/202 (60%), Gaps = 1/202 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V +D G + L+ +F + R+DI+ RV+RWQLAK+QQGTH K +EVS TG K +
Sbjct: 5 VKTLEGKDAGKVSLSDAIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTGAKMY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
+QKGTGRARH + R PQFRGG HGP RSH L KKVR LGL+ ALSA+ ++V
Sbjct: 65 KQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLRHALSAKIKADDVIV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
++L KTK + + + + T L G + KLA QN+ ++VLP G+NVY
Sbjct: 125 IDNLVAAEAKTKALASVFETLGLT-NALFIGGAELDGNFKLAAQNIPNIDVLPIQGINVY 183
Query: 283 SILQHDTLVMSRDAVNKIVDRM 304
I++ LV+S+ AV + +R
Sbjct: 184 DIVRRGKLVLSKAAVEALEERF 205
>gi|440226338|ref|YP_007333429.1| 50S ribosomal protein L4/L1 [Rhizobium tropici CIAT 899]
gi|440037849|gb|AGB70883.1| 50S ribosomal protein L4/L1 [Rhizobium tropici CIAT 899]
Length = 206
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 89/202 (44%), Positives = 122/202 (60%), Gaps = 1/202 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V +D G + L+ +F + R+DI+ RVVRWQLAK+QQGTH K ++V+ TG K +
Sbjct: 5 VKTLEGKDAGKVSLSDAIFGLEPREDILARVVRWQLAKKQQGTHQAKGRADVARTGAKMY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
+QKGTGRARH + R PQFRGG HGP RSH L KKVR LGL+ ALSA+ ++V
Sbjct: 65 KQKGTGRARHHSARAPQFRGGGKAHGPVARSHEHDLPKKVRALGLRHALSAKFKAEDVIV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
++L KTK + + + T L G + KLA QN+ ++VLP G+NVY
Sbjct: 125 IDNLVATEAKTKALAGAFETLGLT-NALFIGGAELDSNFKLAAQNIPNIDVLPVQGINVY 183
Query: 283 SILQHDTLVMSRDAVNKIVDRM 304
IL+ LV+S+ AV + +R
Sbjct: 184 DILRRGKLVLSKAAVEALEERF 205
>gi|456356077|dbj|BAM90522.1| 50S ribosomal protein L4 [Agromonas oligotrophica S58]
Length = 206
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 87/205 (42%), Positives = 128/205 (62%), Gaps = 1/205 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + VT ++ G + L+ +F + R DII R V+WQL KRQ GTH K +E+ TG
Sbjct: 1 MELKVTTLEGKEAGSVQLSDAIFGLEPRADIIQRCVQWQLNKRQAGTHKAKGRAEIWRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP RSHA L KKVR + LK ALSA+A +G
Sbjct: 61 KKMYKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHATDLPKKVRAMALKHALSAKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
L+V E+ + + KTK ++ +++ + T L+ DG +H A +N+ ++VLP G
Sbjct: 121 DLVVLENATLEAAKTKALIGHFSGLGLT-NALIIDGAELHNGFAAAARNIPNMDVLPIQG 179
Query: 279 LNVYSILQHDTLVMSRDAVNKIVDR 303
+NVY IL+ LV+++ A++ + R
Sbjct: 180 INVYDILRRQKLVLTKAAIDALEAR 204
>gi|220921900|ref|YP_002497201.1| 50S ribosomal protein L4 [Methylobacterium nodulans ORS 2060]
gi|254803744|sp|B8IS86.1|RL4_METNO RecName: Full=50S ribosomal protein L4
gi|219946506|gb|ACL56898.1| ribosomal protein L4/L1e [Methylobacterium nodulans ORS 2060]
Length = 206
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 89/202 (44%), Positives = 120/202 (59%), Gaps = 1/202 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+T D G + L +F + R D++ R VRWQLAKRQ GTH KT SE+S T KK +
Sbjct: 5 ITTLDGADAGSVELDEAIFGLEPRADLLQRCVRWQLAKRQAGTHKVKTRSEISRTTKKMY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
+QKGTG ARHG PQFRGG GP RSHA L KKVR L L+ ALSA+A + L+V
Sbjct: 65 KQKGTGNARHGAASAPQFRGGARAFGPVVRSHAHDLPKKVRALALRHALSAKAKDASLIV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
+D+ + KTK + + ++ L+ G + E A +NL ++VLP G+NVY
Sbjct: 125 VDDVRLEDGKTKALKECFGKL-GLSNALIIGGTEVDENFGRAARNLPSIDVLPVQGINVY 183
Query: 283 SILQHDTLVMSRDAVNKIVDRM 304
IL+ D LV++R AV+ + R
Sbjct: 184 DILRRDKLVLTRAAVDALEARF 205
>gi|190571547|ref|YP_001975905.1| 50S ribosomal protein L4 [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|213018949|ref|ZP_03334756.1| ribosomal protein L4 [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|226731443|sp|B3CN27.1|RL4_WOLPP RecName: Full=50S ribosomal protein L4
gi|190357819|emb|CAQ55275.1| ribosomal protein L4 [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|212995058|gb|EEB55699.1| ribosomal protein L4 [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
Length = 204
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 85/202 (42%), Positives = 126/202 (62%), Gaps = 3/202 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+ + N + G + L +F + I+H +VRWQLAKR+ G H TK IS+VSGT KP+
Sbjct: 5 LVDLSNNNVGSVELNPLIFSAKQKLSILHDIVRWQLAKRRVGAHKTKGISDVSGTTAKPY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
QK TGRAR G+LR PQFRGG + GP RSHA LNKKVR+ GLKIALS + +++V
Sbjct: 65 GQKRTGRARQGSLRSPQFRGGGIIFGPVVRSHAYSLNKKVRKFGLKIALSLKYLNNQVVV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
+ L V KT + Y + + +++ D G + L A +NLHYV+++ +GLNV+
Sbjct: 125 LDSLNVDVKKTSKMCEYIKNFKFSSFLIVGDYG---DDLLRAAKNLHYVDLIKPIGLNVF 181
Query: 283 SILQHDTLVMSRDAVNKIVDRM 304
IL H+ +++++D + + R+
Sbjct: 182 DILNHECVMLTKDTLKHLEGRL 203
>gi|403530689|ref|YP_006665218.1| 50S ribosomal protein L4 [Bartonella quintana RM-11]
gi|403232760|gb|AFR26503.1| 50S ribosomal protein L4 [Bartonella quintana RM-11]
Length = 206
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 89/207 (42%), Positives = 129/207 (62%), Gaps = 3/207 (1%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
DLVI + + G + ++ +F + R+DI+ RVVRWQLA+ QQGTH ++ S+VS T
Sbjct: 2 DLVIRTLD--GNEAGRLKVSESIFGLIPREDILQRVVRWQLARHQQGTHHSQGRSDVSRT 59
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G K ++QKGTGRARH + R PQFRGG HGP RSHA L KK+R LGL++ALSA+
Sbjct: 60 GAKMFKQKGTGRARHSSARAPQFRGGGKAHGPVVRSHAHDLPKKIRVLGLRLALSAKLKA 119
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
L++ ++ V KTK +V+ ++++ K LL G I A N+ +++LP
Sbjct: 120 NDLIIVDEFNVKEAKTKMLVSCFSKL-GFKNALLVGGKEIDINFSRAASNIPNIDILPIQ 178
Query: 278 GLNVYSILQHDTLVMSRDAVNKIVDRM 304
G+NVY IL+ LV+S+ AV + +R
Sbjct: 179 GINVYDILRRSKLVLSKAAVEALEERF 205
>gi|116251541|ref|YP_767379.1| 50S ribosomal protein L4 [Rhizobium leguminosarum bv. viciae 3841]
gi|424874859|ref|ZP_18298521.1| 50S ribosomal protein L4, bacterial/organelle [Rhizobium
leguminosarum bv. viciae WSM1455]
gi|424881131|ref|ZP_18304763.1| 50S ribosomal protein L4, bacterial/organelle [Rhizobium
leguminosarum bv. trifolii WU95]
gi|166199852|sp|Q1MIE0.1|RL4_RHIL3 RecName: Full=50S ribosomal protein L4
gi|115256189|emb|CAK07270.1| putative 50S ribosomal protein L4 [Rhizobium leguminosarum bv.
viciae 3841]
gi|392517494|gb|EIW42226.1| 50S ribosomal protein L4, bacterial/organelle [Rhizobium
leguminosarum bv. trifolii WU95]
gi|393170560|gb|EJC70607.1| 50S ribosomal protein L4, bacterial/organelle [Rhizobium
leguminosarum bv. viciae WSM1455]
Length = 206
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 89/202 (44%), Positives = 123/202 (60%), Gaps = 1/202 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V +D G + L+ +F + R+DI+ RV+RWQLAK+QQGTH K +EVS TG K +
Sbjct: 5 VKTLEGKDAGKVSLSDAIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTGAKMY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
+QKGTGRARH + R PQFRGG HGP RSH L KKVR LGL+ ALSA+ ++V
Sbjct: 65 KQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLRHALSAKIKADDVIV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
++L KTK + + + + T L G + KLA QN+ ++VLP G+NVY
Sbjct: 125 IDNLVAAEAKTKSLASVFETLGLT-NALFIGGAELDGNFKLAAQNIPNIDVLPIQGINVY 183
Query: 283 SILQHDTLVMSRDAVNKIVDRM 304
I++ LV+S+ AV + +R
Sbjct: 184 DIVRRGKLVLSKAAVEALEERF 205
>gi|395790887|ref|ZP_10470346.1| 50S ribosomal protein L4 [Bartonella alsatica IBS 382]
gi|395409183|gb|EJF75782.1| 50S ribosomal protein L4 [Bartonella alsatica IBS 382]
Length = 206
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 89/207 (42%), Positives = 129/207 (62%), Gaps = 3/207 (1%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
DLVI + ++ G + ++ +F + R+DI+ RVVRWQLA RQQGTH ++ S+VS T
Sbjct: 2 DLVIKTLD--GDEAGKLKVSDAIFGLVPREDILQRVVRWQLAHRQQGTHQSQGRSDVSRT 59
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G K ++QKGTGRARH + R PQFRGG HGP RSH L KK+R LGL+ ALSA+ E
Sbjct: 60 GAKMFKQKGTGRARHSSARAPQFRGGGKAHGPVVRSHTHDLPKKIRALGLRFALSAKLKE 119
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
L+V +++ + KTK +V+ ++++ LL G I A N+ +++LP
Sbjct: 120 KNLIVVDEMSIKDVKTKVLVSCFSKL-GFNNALLIGGRDIDINFSRAASNIPNIDILPIQ 178
Query: 278 GLNVYSILQHDTLVMSRDAVNKIVDRM 304
G+NVY IL+ LV+S+ AV + +R
Sbjct: 179 GINVYDILRRSKLVLSKAAVEALEERF 205
>gi|365896256|ref|ZP_09434338.1| 50S ribosomal subunit protein L4 [Bradyrhizobium sp. STM 3843]
gi|365422969|emb|CCE06880.1| 50S ribosomal subunit protein L4 [Bradyrhizobium sp. STM 3843]
Length = 206
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 89/206 (43%), Positives = 129/206 (62%), Gaps = 1/206 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + VT ++ G + L+ +F + R+DII R V+WQL KRQ GTH K +E+ TG
Sbjct: 1 MELKVTTLEGKEAGSVQLSDAIFGLDPRQDIIARCVQWQLNKRQAGTHKAKGRAEIWRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP RSHA L KKVR L LK ALSA+A +G
Sbjct: 61 KKMYKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHATDLPKKVRALALKHALSAKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
L+V E+ + + KTK +V +++ + T L+ DG +H A +N+ ++VLP G
Sbjct: 121 DLIVLENATLEAAKTKALVGHFSGLGLT-NALIIDGAELHGGFANAARNIPNMDVLPIQG 179
Query: 279 LNVYSILQHDTLVMSRDAVNKIVDRM 304
+NVY IL+ LV+++ A++ + R
Sbjct: 180 INVYDILRRQKLVLTKAAIDALEARF 205
>gi|424890778|ref|ZP_18314377.1| 50S ribosomal protein L4, bacterial/organelle [Rhizobium
leguminosarum bv. trifolii WSM2012]
gi|393172996|gb|EJC73041.1| 50S ribosomal protein L4, bacterial/organelle [Rhizobium
leguminosarum bv. trifolii WSM2012]
Length = 206
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 89/202 (44%), Positives = 123/202 (60%), Gaps = 1/202 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V +D G + L+ +F + R+DI+ RV+RWQLAK+QQGTH K +EVS TG K +
Sbjct: 5 VKTLEGKDAGKVSLSDAIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTGAKMY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
+QKGTGRARH + R PQFRGG HGP RSH L KKVR LGL+ ALSA+ ++V
Sbjct: 65 KQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLRHALSAKIKADDVIV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
++L KTK + + + + T L G + KLA QN+ ++VLP G+NVY
Sbjct: 125 IDNLVATEAKTKALASVFETLGLT-NALFIGGAELDGNFKLAAQNIPNIDVLPIQGINVY 183
Query: 283 SILQHDTLVMSRDAVNKIVDRM 304
I++ LV+S+ AV + +R
Sbjct: 184 DIVRRGKLVLSKAAVEALEERF 205
>gi|49475793|ref|YP_033834.1| 50S ribosomal protein L4 [Bartonella henselae str. Houston-1]
gi|81647792|sp|Q6G2W6.1|RL4_BARHE RecName: Full=50S ribosomal protein L4
gi|49238600|emb|CAF27841.1| 50S ribosomal protein l4 [Bartonella henselae str. Houston-1]
Length = 206
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 89/207 (42%), Positives = 129/207 (62%), Gaps = 3/207 (1%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
DL+I + + G + ++ VF + R+DI+ RVVRWQLA+RQQGTH ++ S+VS T
Sbjct: 2 DLLIKTLD--GNEVGKLKVSESVFGLVPREDILQRVVRWQLARRQQGTHQSQGRSDVSRT 59
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G K ++QKGTGRARH + R PQFRGG HGP RSHA L KK+R LGL+ ALSA+
Sbjct: 60 GAKMFKQKGTGRARHSSARAPQFRGGGKAHGPVVRSHAHTLPKKIRALGLRFALSAKLKA 119
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
L+V ++ V KT+ +V+ ++++ LL G + AT N+ +++LP
Sbjct: 120 DDLIVVDEFNVKDAKTRMLVSCFSKL-GFDNALLIGGNEVDLNFSRATSNIPNIDILPIQ 178
Query: 278 GLNVYSILQHDTLVMSRDAVNKIVDRM 304
G+NVY IL+ LV+S+ AV + +R
Sbjct: 179 GINVYDILRRSKLVLSKAAVEVLEERF 205
>gi|190891356|ref|YP_001977898.1| 50S ribosomal protein L4 [Rhizobium etli CIAT 652]
gi|226730712|sp|B3PWS2.1|RL4_RHIE6 RecName: Full=50S ribosomal protein L4
gi|190696635|gb|ACE90720.1| 50S ribosomal protein L4 [Rhizobium etli CIAT 652]
Length = 206
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 89/206 (43%), Positives = 125/206 (60%), Gaps = 1/206 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + V +D G + L+ +F + R+DI+ RV+RWQLAK+QQGTH K +EVS TG
Sbjct: 1 MELNVKTLEGKDAGKVSLSDAIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
K ++QKGTGRARH + R PQFRGG HGP RSH L KKVR LGL+ ALSA+
Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLRHALSAKIKAD 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
++V ++L KTK + + + + T L G + KLA QN+ ++VLP G
Sbjct: 121 DVIVIDNLVATEAKTKALASAFETLGLT-NALFIGGAELDGNFKLAAQNIPNIDVLPIQG 179
Query: 279 LNVYSILQHDTLVMSRDAVNKIVDRM 304
+NVY I++ LV+S+ AV + +R
Sbjct: 180 INVYDIVRRGKLVLSKAAVEALEERF 205
>gi|89053075|ref|YP_508526.1| 50S ribosomal protein L4 [Jannaschia sp. CCS1]
gi|109893599|sp|Q28UW1.1|RL4_JANSC RecName: Full=50S ribosomal protein L4
gi|88862624|gb|ABD53501.1| LSU ribosomal protein L4P [Jannaschia sp. CCS1]
Length = 206
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 88/206 (42%), Positives = 122/206 (59%), Gaps = 1/206 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + V + G + L +F + R DI+HRVVRWQ Q GTH KT EVS +
Sbjct: 1 MKVDVIKLDGKKAGSVDLDEALFGLEPRADILHRVVRWQRNNAQAGTHKVKTRREVSYST 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK +RQKGTG ARHG P FRGG GP PRSH +L KK R+LGL+ ALSA+AAEG
Sbjct: 61 KKIYRQKGTGGARHGARSAPIFRGGGVYKGPTPRSHGHELTKKFRKLGLRHALSAKAAEG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
+L+V E + + KT + +M K+ L+ DG + A +N+ ++VLP++G
Sbjct: 121 RLVVIESIAMDEAKTSALAKQVKEM-GWKRALIIDGSDVDANFAQAARNIEGLDVLPTMG 179
Query: 279 LNVYSILQHDTLVMSRDAVNKIVDRM 304
NVY IL+ DTLV+++ V + R+
Sbjct: 180 ANVYDILKRDTLVITKAGVEALEARL 205
>gi|163760800|ref|ZP_02167879.1| 50S ribosomal protein L4 [Hoeflea phototrophica DFL-43]
gi|162281844|gb|EDQ32136.1| 50S ribosomal protein L4 [Hoeflea phototrophica DFL-43]
Length = 206
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 88/203 (43%), Positives = 122/203 (60%), Gaps = 1/203 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ VT + G + L+ +F + R+D+I R+VRWQLAK+QQG H T SE+S TG K
Sbjct: 3 LTVTTLEGKSAGKISLSDAIFGLEPRQDLIQRIVRWQLAKKQQGGHKTLGRSEISRTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH PQFRGG HGP RSHA L KKVR L L+ ALSA+A +
Sbjct: 63 MFKQKGTGRARHHAASAPQFRGGGRAHGPVVRSHAHDLPKKVRALALRHALSAKAQASDI 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
++ + L KTK + ++M L G + + +LA +N+ V+VLP G+N
Sbjct: 123 IIVDSLTAGEAKTKALTGSLDKM-GLNNALFIGGAELDQNFRLAAKNIPNVDVLPVQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDR 303
VY IL+ LV+S+DAV + +R
Sbjct: 182 VYDILRRGKLVLSKDAVAALEER 204
>gi|126732273|ref|ZP_01748073.1| 50S ribosomal protein L4 [Sagittula stellata E-37]
gi|126707142|gb|EBA06208.1| 50S ribosomal protein L4 [Sagittula stellata E-37]
Length = 205
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 91/204 (44%), Positives = 127/204 (62%), Gaps = 2/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + L +F + R DI+HRVVRWQ K Q GTH KT SEVS + KK
Sbjct: 3 LDVINLDGGSAGEVELDEALFGLEPRADILHRVVRWQRNKAQAGTHKVKTRSEVSYSTKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
+RQKGTG ARHG+ + P FR G GP PRSHA +L KKVR LGLK+ALS +A G L
Sbjct: 63 IYRQKGTGGARHGSRKAPIFRKGGIYKGPTPRSHAHELPKKVRALGLKMALSDKARNGAL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + ++ S KTK + +++ K+ L+ DG ++E A +N+ ++VLP++G N
Sbjct: 123 IVIDSIDGAS-KTKALAAQVSKL-GWKRALIIDGAEVNENFAKAARNIEGLDVLPTIGAN 180
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL+ DTLV+++ V + R+
Sbjct: 181 VYDILKRDTLVITKAGVEALEARL 204
>gi|410464304|ref|ZP_11317750.1| 50S ribosomal protein L4, bacterial/organelle [Desulfovibrio
magneticus str. Maddingley MBC34]
gi|409982555|gb|EKO38998.1| 50S ribosomal protein L4, bacterial/organelle [Desulfovibrio
magneticus str. Maddingley MBC34]
Length = 210
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 85/204 (41%), Positives = 130/204 (63%), Gaps = 5/204 (2%)
Query: 104 TNFFNE---DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
FN+ + G + LA +VF+V ++ +++H VVR QLA ++ GTHS KT + VSG GKK
Sbjct: 4 VKLFNQGCQEIGTVDLAPEVFEVEVQPELLHLVVRAQLAAKRAGTHSVKTRAYVSGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G+ R P +RGG +HGP+PR + K+N+KVR+L L++ALSA+ E +L
Sbjct: 64 PWRQKGTGRARAGSTRSPLWRGGAVVHGPQPRDYTFKVNRKVRQLALRMALSAKLVEDQL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
++ + + P KTK + + K +++ L+L+ +NL + V+ LN
Sbjct: 124 VLLDAIAFPEVKTKLMAKVVSDFSWKKALIVLPES--DNNLELSARNLPGIKVVRQDMLN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY +L HD +VM +DA K+ +R+
Sbjct: 182 VYDVLLHDHVVMMKDAALKVQERL 205
>gi|241204166|ref|YP_002975262.1| 50S ribosomal protein L4 [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|240858056|gb|ACS55723.1| ribosomal protein L4/L1e [Rhizobium leguminosarum bv. trifolii
WSM1325]
Length = 206
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 88/202 (43%), Positives = 123/202 (60%), Gaps = 1/202 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V +D G + L+ +F + R+DI+ RV+RWQLAK+QQGTH K +E+S TG K +
Sbjct: 5 VKTLEGKDAGKVSLSDAIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEISRTGAKMY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
+QKGTGRARH + R PQFRGG HGP RSH L KKVR LGL+ ALSA+ ++V
Sbjct: 65 KQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLRHALSAKIKADDVIV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
++L KTK + + + + T L G + KLA QN+ ++VLP G+NVY
Sbjct: 125 IDNLVAAEAKTKSLASVFETLGLT-NALFIGGAELDGNFKLAAQNIPNIDVLPIQGINVY 183
Query: 283 SILQHDTLVMSRDAVNKIVDRM 304
I++ LV+S+ AV + +R
Sbjct: 184 DIVRRGKLVLSKAAVEALEERF 205
>gi|398829356|ref|ZP_10587554.1| 50S ribosomal protein L4, bacterial/organelle [Phyllobacterium sp.
YR531]
gi|398216841|gb|EJN03381.1| 50S ribosomal protein L4, bacterial/organelle [Phyllobacterium sp.
YR531]
Length = 206
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 87/203 (42%), Positives = 124/203 (61%), Gaps = 1/203 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ +T D G + L+ ++F + R DI+ R+VR+QLA++QQGTH KT SE++ TG K
Sbjct: 3 LTITTLEGADAGKLKLSEEIFGLEPRDDILQRMVRYQLARKQQGTHKAKTRSEIARTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP SHA L KKVR L L+ ALSA+ L
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGKAHGPVVHSHAHDLPKKVRALALRHALSAKVKASDL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
++ +DL KTK +V+ + ++ + LL G I A N+ ++VLP G+N
Sbjct: 123 IIVDDLLATEAKTKTLVSQFAKL-GLQNALLIGGAEIDVNFARAASNIPNIDVLPIQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDR 303
VY IL+ LV+S+ AV + +R
Sbjct: 182 VYDILRRGKLVLSKAAVEALEER 204
>gi|42520529|ref|NP_966444.1| 50S ribosomal protein L4 [Wolbachia endosymbiont of Drosophila
melanogaster]
gi|46577161|sp|P61071.1|RL4_WOLPM RecName: Full=50S ribosomal protein L4
gi|42410268|gb|AAS14378.1| ribosomal protein L4 [Wolbachia endosymbiont of Drosophila
melanogaster]
Length = 204
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 83/202 (41%), Positives = 126/202 (62%), Gaps = 3/202 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+ N N++ G L +F + I+H +VRWQLAKR+ GTH TK IS+VSGT KP+
Sbjct: 5 LVNLSNDNVGAAQLNPLIFSAKQKLSILHDIVRWQLAKRRAGTHKTKGISDVSGTTAKPY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
QK TGRAR G+LR PQFRGG + GP RSH LNKKVR+ GLKIALS + ++++
Sbjct: 65 GQKRTGRARQGSLRSPQFRGGGIIFGPVVRSHTYSLNKKVRKFGLKIALSLKYLNNQVII 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
++L + KT + + + +++ D G + L A +NLHYV+++ +GLNV+
Sbjct: 125 LDNLNIDVKKTSEMCKCIKNFKFSSFLIVGDYG---DDLLRAAKNLHYVDLIKPIGLNVF 181
Query: 283 SILQHDTLVMSRDAVNKIVDRM 304
IL H+ +++++D + + R+
Sbjct: 182 DILNHECVMLTKDTLKHLEGRL 203
>gi|110180290|gb|ABG54388.1| 23S ribosomal protein L4 [Brucella pinnipedialis]
Length = 206
Score = 163 bits (413), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 87/204 (42%), Positives = 124/204 (60%), Gaps = 1/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ +T +D G + L ++F + R DI+ RVVRWQLA+RQQG+H + +VS TG K
Sbjct: 3 LTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTGSK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRA H + R PQFRGG HGP R+H L KKVR LGL+ ALSA+A L
Sbjct: 63 MYKQKGTGRASHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVRALGLRHALSAKAKASDL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
++ +DL KTK +V+ + ++ + LL G I + A N+ ++VLP G+N
Sbjct: 123 IIIDDLASADAKTKQLVSQFAKL-GLENALLIGGAEIDANFQRAASNIPNIDVLPVQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL+ LV+S+ AV + +R
Sbjct: 182 VYDILRRGKLVLSKAAVEALEERF 205
>gi|225630300|ref|YP_002727091.1| ribosomal protein L4 [Wolbachia sp. wRi]
gi|254803765|sp|C0R308.1|RL4_WOLWR RecName: Full=50S ribosomal protein L4
gi|225592281|gb|ACN95300.1| ribosomal protein L4 [Wolbachia sp. wRi]
Length = 204
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 83/202 (41%), Positives = 126/202 (62%), Gaps = 3/202 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+ N N++ G L +F + I+H +VRWQLAKR+ GTH TK IS+VSGT KP+
Sbjct: 5 LVNLSNDNVGTAQLNPLIFSAKQKLSILHDIVRWQLAKRRAGTHKTKGISDVSGTTAKPY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
QK TGRAR G+LR PQFRGG + GP RSH LNKKVR+ GLKIALS + ++++
Sbjct: 65 GQKRTGRARQGSLRSPQFRGGGIIFGPVVRSHTYSLNKKVRKFGLKIALSLKYLNNQVII 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
++L + KT + + + +++ D G + L A +NLHYV+++ +GLNV+
Sbjct: 125 LDNLNIDVKKTSEMCKCIKNFKFSSFLIVGDYG---DDLLRAAKNLHYVDLIKPIGLNVF 181
Query: 283 SILQHDTLVMSRDAVNKIVDRM 304
IL H+ +++++D + + R+
Sbjct: 182 DILNHECVMLTKDTLKHLEGRL 203
>gi|436842983|ref|YP_007327361.1| ribosomal protein L4 [Desulfovibrio hydrothermalis AM13 = DSM
14728]
gi|432171889|emb|CCO25262.1| ribosomal protein L4 [Desulfovibrio hydrothermalis AM13 = DSM
14728]
Length = 206
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 131/204 (64%), Gaps = 2/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I + + N++ G M LA +VF+VP++ +I+H VVR QLA ++ GTH+TKT G G K
Sbjct: 4 ITIYDQTNKEVGSMDLAPEVFEVPVKPEILHLVVRSQLAAKRSGTHATKTRGMKRGGGAK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G+ R P +RGG T GP+PR ++ K+NKKVR L LK+AL+++ +E KL
Sbjct: 64 PWRQKGTGRARAGSTRSPLWRGGGTTFGPQPRDYSFKVNKKVRALALKMALTSKLSEEKL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + +++P KTK + + K +++ KL L+ +N+ + ++ + LN
Sbjct: 124 MVVKSIDLPEIKTKLFADVAETLGLYKALIVVKDA--DNKLLLSARNIPGIKLISADQLN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL+H +VM +A + +R+
Sbjct: 182 VYDILRHRQVVMLENAAQDLQERL 205
>gi|334345466|ref|YP_004554018.1| 50S ribosomal protein L4 [Sphingobium chlorophenolicum L-1]
gi|334102088|gb|AEG49512.1| ribosomal protein L4/L1e [Sphingobium chlorophenolicum L-1]
Length = 207
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 91/205 (44%), Positives = 125/205 (60%), Gaps = 1/205 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + G + L VF V R DI+HRVV WQL KR+ T +T+ S+V+ TGKK
Sbjct: 3 VNVQTLDAQAAGDLELNDAVFGVEPRTDILHRVVLWQLEKRRAPTRATRERSDVARTGKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
RQKG G ARHG + P F GG HG + R+ LNKKVR LGLK+ALS +A G L
Sbjct: 63 FGRQKGGGTARHGDRKAPVFIGGGKAHGARARTFGHDLNKKVRALGLKMALSTKAKNGSL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V ++L+V KTK +V + ++ N K L DG ++ A+ N+ VN+LP+VG N
Sbjct: 123 IVLDNLDVAEGKTKALVAHLAKL-NLNKALFIDGDAVNVSFAKASANIVGVNLLPAVGAN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRMH 305
VY IL+ D+LV++R AV K+ R +
Sbjct: 182 VYDILRADSLVLTRAAVEKLEARFN 206
>gi|222085676|ref|YP_002544206.1| 50S ribosomal protein L4 [Agrobacterium radiobacter K84]
gi|398377350|ref|ZP_10535525.1| 50S ribosomal protein L4, bacterial/organelle [Rhizobium sp. AP16]
gi|254803707|sp|B9JDS9.1|RL4_AGRRK RecName: Full=50S ribosomal protein L4
gi|221723124|gb|ACM26280.1| 50S ribosomal protein L4 [Agrobacterium radiobacter K84]
gi|397726688|gb|EJK87120.1| 50S ribosomal protein L4, bacterial/organelle [Rhizobium sp. AP16]
Length = 206
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 87/206 (42%), Positives = 124/206 (60%), Gaps = 1/206 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + V +D G + L+ +F + R+DII RV+RWQLAK++QGTH + +EVS TG
Sbjct: 1 MELNVKTLEGKDAGKVSLSDAIFGLEPREDIIARVIRWQLAKKRQGTHKAQGRAEVSRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
K ++QKGTGRARH + R PQFRGG HGP RSH L KKVR LGL++ALSA+
Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLRLALSAKLKAE 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
+++ ++L KTK + + + T L G + KLA N+ ++VLP G
Sbjct: 121 DVIILDNLVAADAKTKALAGAFETLGLT-NALFIGGAELDSNFKLAAANIPNIDVLPVQG 179
Query: 279 LNVYSILQHDTLVMSRDAVNKIVDRM 304
+NVY IL+ LV+S+ AV + +R
Sbjct: 180 INVYDILRRGKLVLSKAAVEALEERF 205
>gi|256369656|ref|YP_003107166.1| 50S ribosomal protein L4 [Brucella microti CCM 4915]
gi|255999818|gb|ACU48217.1| 50S ribosomal protein L4 [Brucella microti CCM 4915]
Length = 206
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 87/204 (42%), Positives = 124/204 (60%), Gaps = 1/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ +T +D + L ++F + R DI+ RVVRWQLA+RQQG+H + +VS TG K
Sbjct: 3 LTITTLEGKDADKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTGSK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP R+H L KKVR LGL+ ALSA+A L
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVRALGLRHALSAKAKASDL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
++ +DL KTK +V+ + ++ + LL G I + A N+ ++VLP G+N
Sbjct: 123 IIIDDLASADAKTKQLVSQFAKL-GLENALLIGGAEIDANFQRAASNIPNIDVLPVQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL+ LV+S+ AV + +R
Sbjct: 182 VYDILRRGKLVLSKAAVEALEERF 205
>gi|110180274|gb|ABG54380.1| 23S ribosomal protein L4 [Brucella ceti]
gi|110180278|gb|ABG54382.1| 23S ribosomal protein L4 [Brucella ceti]
Length = 206
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 87/204 (42%), Positives = 124/204 (60%), Gaps = 1/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ +T +D G + L ++F + R DI+ RVVRWQLA+RQQG+H + +VS TG K
Sbjct: 3 LTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTGSK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGT RARH + R PQFRGG HGP R+H L KKVR LGL+ ALSA+A L
Sbjct: 63 MYKQKGTDRARHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVRALGLRHALSAKAKASDL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
++ +DL KTK +V+ + ++ + LL G I + A N+ ++VLP G+N
Sbjct: 123 IIIDDLASADAKTKQLVSQFAKL-GLENALLIGGAEIDANFQRAASNIPNIDVLPVQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL+ LV+S+ AV + +R
Sbjct: 182 VYDILRRGKLVLSKAAVEALEERF 205
>gi|148260938|ref|YP_001235065.1| 50S ribosomal protein L4 [Acidiphilium cryptum JF-5]
gi|326404336|ref|YP_004284418.1| 50S ribosomal protein L4 [Acidiphilium multivorum AIU301]
gi|338989186|ref|ZP_08634057.1| RplD [Acidiphilium sp. PM]
gi|166234626|sp|A5FZW4.1|RL4_ACICJ RecName: Full=50S ribosomal protein L4
gi|146402619|gb|ABQ31146.1| LSU ribosomal protein L4P [Acidiphilium cryptum JF-5]
gi|325051198|dbj|BAJ81536.1| 50S ribosomal protein L4 [Acidiphilium multivorum AIU301]
gi|338205873|gb|EGO94138.1| RplD [Acidiphilium sp. PM]
Length = 216
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 92/204 (45%), Positives = 120/204 (58%), Gaps = 3/204 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I ++ G L + F R DI+ RVV WQLAKR+ GTH K + EVSGT KK
Sbjct: 3 IDISTLDAGSAGKAELPEEYFAATPRADIMARVVHWQLAKRRAGTHKVKGMGEVSGTTKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQKGTG AR G+LR PQFR G +HGP R H LNKKVRRLGL ALS + AEGKL
Sbjct: 63 PYRQKGTGNARQGSLRAPQFRTGGAVHGPVVRDHGYSLNKKVRRLGLISALSQKLAEGKL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + + S ++ N + + L+ D + E A++NL ++VLP VG N
Sbjct: 123 VVLDTVAGVSKTSEL--NVKLKKLGWGRTLVVD-AVVDEGFARASRNLIGIDVLPVVGAN 179
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY ILQHDTL ++ + + R+
Sbjct: 180 VYDILQHDTLAITAAGLEGLKRRL 203
>gi|310817007|ref|YP_003964971.1| 50S ribosomal protein L4 [Ketogulonicigenium vulgare Y25]
gi|385234595|ref|YP_005795937.1| 50S ribosomal protein L4 [Ketogulonicigenium vulgare WSH-001]
gi|308755742|gb|ADO43671.1| 50S ribosomal protein L4 [Ketogulonicigenium vulgare Y25]
gi|343463506|gb|AEM41941.1| 50S ribosomal protein L4 [Ketogulonicigenium vulgare WSH-001]
Length = 206
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 89/204 (43%), Positives = 120/204 (58%), Gaps = 1/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I N G + L +F + R DI+HR+VRWQ A+ QQGTH SEVS + KK
Sbjct: 3 IDAINLDGGAAGSVELNDAIFALEPRADILHRLVRWQRARAQQGTHKVLGKSEVSYSTKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
+RQKGTG ARHG+ + P FR G GP PRSH L KK R LGLK ALSA+A G+L
Sbjct: 63 IYRQKGTGGARHGSKKAPIFRHGGVYKGPTPRSHEHDLTKKFRALGLKHALSAKAKAGEL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V E V KT + + + K+ L+ DG + E A +N+ +++LPS+G N
Sbjct: 123 VVIEAATVAEAKTALLAKQLSNL-GWKRALVIDGAAVDEGFARAARNIANLDILPSMGAN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL+ DTLV+++ AV + R+
Sbjct: 182 VYDILRSDTLVLTKAAVEALEARL 205
>gi|349685845|ref|ZP_08896987.1| 50S ribosomal protein L4 [Gluconacetobacter oboediens 174Bp2]
Length = 204
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 89/202 (44%), Positives = 118/202 (58%), Gaps = 3/202 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+ N G L ++F R DI+ RVV WQLAKR+ G H K + E+SGT KKP+
Sbjct: 5 IKTLDNGSAGKTSLPDEIFAATPRTDIMARVVHWQLAKRRAGKHKVKGMGEISGTTKKPY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQKGTG AR G+LR PQ+R G +HGP R H L KKVRRLGL ALS +AAEGKL+V
Sbjct: 65 RQKGTGSARQGSLRSPQYRTGGVVHGPVVRDHGYDLPKKVRRLGLISALSQKAAEGKLVV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
D S K+ + + T L+ D + E A +NL +++LP++G NVY
Sbjct: 125 L-DAATASGKSAELAKKLKVLGWT-SALIVD-AAVEENFGRAARNLPKIDILPTIGANVY 181
Query: 283 SILQHDTLVMSRDAVNKIVDRM 304
IL HD L ++R V + +R+
Sbjct: 182 DILNHDVLAITRAGVEGLKERL 203
>gi|451940811|ref|YP_007461449.1| 50S ribosomal protein L4 [Bartonella australis Aust/NH1]
gi|451900198|gb|AGF74661.1| 50S ribosomal protein L4 [Bartonella australis Aust/NH1]
Length = 207
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 89/206 (43%), Positives = 126/206 (61%), Gaps = 3/206 (1%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
DLV+ + + G + L+ +F + R+DI+ RVVRWQLA+RQQGTH ++ S+VS T
Sbjct: 3 DLVVKTLD--GNEVGELKLSESIFGLVPREDILQRVVRWQLARRQQGTHQSQGRSDVSRT 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G K ++QKGTGRARH + R PQFRGG HGP R+HA L KK+R LGL++ALS +
Sbjct: 61 GAKMFKQKGTGRARHSSARAPQFRGGGKAHGPVVRNHAHDLPKKIRALGLRLALSVKVKT 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
L+V E+ V KTK + ++++ LL G I A N+ ++VLP
Sbjct: 121 NNLVVVEEFSVQDAKTKVLAANFSKL-GFNNALLIGGREIDMSFSRAVSNIPNIDVLPIQ 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKIVDR 303
G+NVY IL+ LV+S+ AV + +R
Sbjct: 180 GINVYDILRRSKLVLSKAAVEALEER 205
>gi|85709056|ref|ZP_01040122.1| 50S ribosomal protein L4 [Erythrobacter sp. NAP1]
gi|85690590|gb|EAQ30593.1| 50S ribosomal protein L4 [Erythrobacter sp. NAP1]
Length = 207
Score = 163 bits (413), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 89/207 (42%), Positives = 125/207 (60%), Gaps = 1/207 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + V + G + L+ DVF V R DI+HRVV WQL R+ T+ S+V+ TG
Sbjct: 1 MKVKVQKIDGKASGDIELSDDVFGVEPRADILHRVVTWQLENRRATARPTRERSDVARTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK QKG+G ARHG P F GG HG + R LNKK+R LGLK+ALS +A +G
Sbjct: 61 KKFGAQKGSGGARHGDRGAPIFIGGGKAHGARKRDFNQSLNKKIRALGLKMALSTKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
L+V + LE+ KT+ + ++++ KVL+ DG +++ K A NL VNVLP+ G
Sbjct: 121 -LVVLDSLELKEAKTQALKGHFDKHGFAGKVLVIDGESVNDGFKQAAGNLKGVNVLPAAG 179
Query: 279 LNVYSILQHDTLVMSRDAVNKIVDRMH 305
NVY IL HDTL++++DAV K+ R +
Sbjct: 180 ANVYDILNHDTLILTKDAVEKLEARFN 206
>gi|409436835|ref|ZP_11263994.1| 50S ribosomal subunit protein L4 [Rhizobium mesoamericanum STM3625]
gi|408751309|emb|CCM75148.1| 50S ribosomal subunit protein L4 [Rhizobium mesoamericanum STM3625]
Length = 206
Score = 163 bits (412), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 87/202 (43%), Positives = 122/202 (60%), Gaps = 1/202 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V +D G + L+ +F + R+DI+ RV+RWQLAK+QQGTH K ++VS TG K +
Sbjct: 5 VKTLEGKDAGKVSLSDAIFGLEPREDILARVIRWQLAKKQQGTHQAKGRADVSRTGAKMY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
+QKGTGRARH + R PQFRGG HGP RSH L KKVR LGL+ ALSA+ +++
Sbjct: 65 KQKGTGRARHHSARAPQFRGGGKAHGPVARSHEHDLPKKVRALGLRHALSAKLKSDDVII 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
+ L KTK + + + + T L G + KLA QN+ ++VLP G+NVY
Sbjct: 125 IDSLVAAEAKTKALASAFETLGLT-NALFIGGAELDGNFKLAAQNIPNIDVLPIQGINVY 183
Query: 283 SILQHDTLVMSRDAVNKIVDRM 304
I++ LV+S+ AV + +R
Sbjct: 184 DIVRRGKLVLSKAAVEALEERF 205
>gi|239905859|ref|YP_002952598.1| 50S ribosomal protein L4 [Desulfovibrio magneticus RS-1]
gi|259491554|sp|C4XLX4.1|RL4_DESMR RecName: Full=50S ribosomal protein L4
gi|239795723|dbj|BAH74712.1| 50S ribosomal protein L4 [Desulfovibrio magneticus RS-1]
Length = 210
Score = 163 bits (412), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 85/204 (41%), Positives = 130/204 (63%), Gaps = 5/204 (2%)
Query: 104 TNFFNE---DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
FN+ + G + LA +VF+V ++ +++H VVR QLA ++ GTHS KT + VSG GKK
Sbjct: 4 VKLFNQGCQEIGTVDLAPEVFEVEVQPELLHLVVRAQLAAKRAGTHSVKTRAFVSGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G+ R P +RGG +HGP+PR + K+N+KVR+L L++ALSA+ E +L
Sbjct: 64 PWRQKGTGRARAGSTRSPLWRGGAVVHGPQPRDYTFKVNRKVRQLALRMALSAKLVEDQL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
++ + + P KTK + + K +++ L+L+ +NL + V+ LN
Sbjct: 124 VLLDAIAFPEVKTKLMAKVVSDFSWKKALIVLPES--DNNLELSARNLPGIKVVRQDMLN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY +L HD +VM +DA K+ +R+
Sbjct: 182 VYDVLLHDHVVMMKDAALKVQERL 205
>gi|304321441|ref|YP_003855084.1| 50S ribosomal protein L4 [Parvularcula bermudensis HTCC2503]
gi|303300343|gb|ADM09942.1| 50S ribosomal protein L4 [Parvularcula bermudensis HTCC2503]
Length = 220
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/206 (43%), Positives = 121/206 (58%), Gaps = 2/206 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ I V G + L D+F + R DI+HR V WQ AKRQQGTH K EV+GT
Sbjct: 1 MQIDVLTLDASKAGDLDLRDDIFGLEPRADILHRYVVWQQAKRQQGTHKAKERGEVTGTT 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK RQKG+G ARHG + PQF GG HGP+ RSHA L KKVRRL L+ ALSA+
Sbjct: 61 KKFVRQKGSGGARHGNRKAPQFVGGGKAHGPRVRSHAHDLPKKVRRLALRHALSAKQGAA 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
+L++ ++ V KTK + ++ + L+ D + E A +NL V+VLP +G
Sbjct: 121 ELIIIDEATVADVKTKVLAEKLQKL-GVRNSLVID-QSVDEGFARAARNLDGVDVLPVIG 178
Query: 279 LNVYSILQHDTLVMSRDAVNKIVDRM 304
NVY IL+HD L+++R AV + R+
Sbjct: 179 ANVYDILRHDKLILTRAAVEGLYARL 204
>gi|78357299|ref|YP_388748.1| 50S ribosomal protein L4 [Desulfovibrio alaskensis G20]
gi|109893592|sp|Q30Z43.1|RL4_DESDG RecName: Full=50S ribosomal protein L4
gi|78219704|gb|ABB39053.1| ribosomal protein L4/L1e [Desulfovibrio alaskensis G20]
Length = 206
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 86/207 (41%), Positives = 134/207 (64%), Gaps = 5/207 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+ V +++DK G + LA +VF+V +R +I++ VVR Q A ++ GTHS KT S +SG
Sbjct: 1 MAVVKVYDQDKKETGELTLAPEVFEVEVRPEILNLVVRAQRAAKRAGTHSVKTRSTISGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G KPWRQKGTGRAR G+ R P +RGG + GP+PR ++ K+NKKVR+L LK+ALS+R AE
Sbjct: 61 GAKPWRQKGTGRARSGSNRSPVWRGGAVVFGPQPRDYSFKVNKKVRKLALKMALSSRLAE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
L+V + +E+P KTK +V + K +++ + +KL L+ +N+ + ++
Sbjct: 121 ENLMVVKGIELPEVKTKHMVKVAGALGLGKALVVTP--EMDDKLVLSARNIPGITLMTPE 178
Query: 278 GLNVYSILQHDTLVMSRDAVNKIVDRM 304
L+V+ IL+H LV+ AV + +R+
Sbjct: 179 QLSVFEILKHAQLVLLEGAVEPVQERL 205
>gi|339018300|ref|ZP_08644438.1| LSU ribosomal protein L4P [Acetobacter tropicalis NBRC 101654]
gi|338752577|dbj|GAA07742.1| LSU ribosomal protein L4P [Acetobacter tropicalis NBRC 101654]
Length = 204
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 86/204 (42%), Positives = 121/204 (59%), Gaps = 3/204 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I + N G L ++F V R DI+ RVV WQLAKR+ GTH K +++VSGT KK
Sbjct: 3 IEIKTLDNGTAGSATLPDELFAVAPRADIMARVVHWQLAKRRAGTHQVKGMADVSGTTKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQKGTG AR G+LR PQ+R G +HGP R H L KKVRRLGL ALS +A +GKL
Sbjct: 63 PYRQKGTGSARQGSLRAPQYRTGGVVHGPVSRDHGYDLPKKVRRLGLISALSQKAQDGKL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + + ++ V + K L+ D + E A +NL ++VLP++G N
Sbjct: 123 IVLQSASGVARTSELAVKL--KTLGLKSALIVD-AAVDEGFVRAARNLPKIDVLPTIGAN 179
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL H+ L +++ + + +R+
Sbjct: 180 VYDILNHEVLAITQAGLEGLKERL 203
>gi|261222394|ref|ZP_05936675.1| ribosomal protein L4 [Brucella ceti B1/94]
gi|265998359|ref|ZP_06110916.1| ribosomal protein L4 [Brucella ceti M490/95/1]
gi|82798206|gb|ABB91855.1| ribosomal protein L4 [Brucella ceti]
gi|260920978|gb|EEX87631.1| ribosomal protein L4 [Brucella ceti B1/94]
gi|262552827|gb|EEZ08817.1| ribosomal protein L4 [Brucella ceti M490/95/1]
Length = 206
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 87/204 (42%), Positives = 124/204 (60%), Gaps = 1/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ +T +D G + L ++F + R DI+ RVVRWQLA+RQQG+H + +VS TG K
Sbjct: 3 LTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTGSK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP R+H L KKV LGL+ ALSA+A L
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVLALGLRHALSAKAKASDL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
++ +DL KTK +V+ + ++ + LL G I + A N+ ++VLP G+N
Sbjct: 123 IIIDDLASADAKTKQLVSQFAKL-GLENALLIGGAEIDANFQRAASNIPNIDVLPVQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL+ LV+S+ AV + +R
Sbjct: 182 VYDILRRGKLVLSKAAVEALEERF 205
>gi|405376543|ref|ZP_11030497.1| 50S ribosomal protein L4, bacterial/organelle [Rhizobium sp. CF142]
gi|397326870|gb|EJJ31181.1| 50S ribosomal protein L4, bacterial/organelle [Rhizobium sp. CF142]
Length = 206
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 88/206 (42%), Positives = 124/206 (60%), Gaps = 1/206 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + V +D G + L+ +F + R+DI+ RV+RWQLAK+QQGTH K ++V TG
Sbjct: 1 MELNVKTLEGKDAGKVSLSEAIFGLEPREDILARVIRWQLAKKQQGTHQAKGRADVWRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
K ++QKGTGRARH + R PQFRGG HGP RSH L KKVR LGL+ ALSA+
Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVARSHEHDLPKKVRALGLRHALSAKIKAD 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
+L++ +DL KTK + + + T L G + KLA QN+ ++VLP G
Sbjct: 121 ELIIIDDLVANEAKTKALAGVFATLGLT-NALFIGGAELDGNFKLAAQNIPNIDVLPIQG 179
Query: 279 LNVYSILQHDTLVMSRDAVNKIVDRM 304
+NVY I++ LV+S+ AV + +R
Sbjct: 180 INVYDIVRRGKLVLSKAAVEALEERF 205
>gi|406925479|gb|EKD61943.1| hypothetical protein ACD_54C00012G0002 [uncultured bacterium]
Length = 206
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 82/185 (44%), Positives = 120/185 (64%), Gaps = 1/185 (0%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
+F + R D++HRVVRWQ A+ Q GTHST T +EVS + KK ++QKGTG ARHG+ + P
Sbjct: 22 LFGLDPRADVLHRVVRWQRARSQAGTHSTLTRAEVSYSTKKIYKQKGTGGARHGSKKAPI 81
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
FR G + GP PRSHA L KK R LGL+ ALSA+A G+L++ + + KT + +
Sbjct: 82 FRHGGVVKGPTPRSHAHDLPKKFRALGLRHALSAKAKAGELVILDTASMAEAKTSVLAKH 141
Query: 240 YNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNK 299
++ K+VL+ DG + LA +N+ ++VLP++G NVY IL+ DTLV+++ V
Sbjct: 142 AQEL-GWKRVLIIDGAAVDANFALAARNIEGIDVLPTMGANVYDILKRDTLVITKAGVEA 200
Query: 300 IVDRM 304
+ R+
Sbjct: 201 LEARL 205
>gi|341614504|ref|ZP_08701373.1| 50S ribosomal protein L4 [Citromicrobium sp. JLT1363]
Length = 208
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 87/186 (46%), Positives = 119/186 (63%), Gaps = 1/186 (0%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
VF V R DI+HRVV WQL R+ T+ S+V+ TGKK RQKG+G ARHG P
Sbjct: 23 VFGVEPRTDILHRVVTWQLWNRRATARPTRERSDVARTGKKFGRQKGSGGARHGDRGAPI 82
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
F GG HG + R + LNKK+R LGLK+ALS +A +G L+V + LE+ KTK + +
Sbjct: 83 FIGGGKAHGARKRDFNMSLNKKIRSLGLKMALSTKAKDG-LVVVDSLELEDAKTKALKGH 141
Query: 240 YNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNK 299
+++ KVL+ DG ++E A NL VNV+P++G NVY IL+HDTLV+++DAV K
Sbjct: 142 FDKAGWNGKVLVIDGESVNEGFARAAGNLPGVNVMPAIGANVYDILKHDTLVLTKDAVEK 201
Query: 300 IVDRMH 305
+ R +
Sbjct: 202 LEARFN 207
>gi|395767222|ref|ZP_10447757.1| 50S ribosomal protein L4 [Bartonella doshiae NCTC 12862]
gi|395414535|gb|EJF80977.1| 50S ribosomal protein L4 [Bartonella doshiae NCTC 12862]
Length = 206
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/207 (43%), Positives = 127/207 (61%), Gaps = 3/207 (1%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
DL+I + + G + ++ +F + R+DI+ RVV WQLA+RQQGTH ++ S+VS T
Sbjct: 2 DLIIKTLD--GNEAGKLTVSRGIFGLVPREDILQRVVLWQLARRQQGTHQSQGRSDVSRT 59
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G K ++QKGTGRARH + R PQFRGG HGP RSHA L KKVR LGL +ALS +
Sbjct: 60 GAKMFKQKGTGRARHSSARAPQFRGGGKAHGPVVRSHAHDLPKKVRALGLCLALSVKLKA 119
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
L+V ++L V KTK +V+ ++++ L DG I A N+ V++LP
Sbjct: 120 NDLIVIDELSVKDAKTKTLVSSFSKL-GFNNALFIDGKEIDVNFFRAASNIPNVDILPIQ 178
Query: 278 GLNVYSILQHDTLVMSRDAVNKIVDRM 304
G+NVY IL+ LV+S+ AV + +R
Sbjct: 179 GINVYDILRRSKLVLSKAAVEALEERF 205
>gi|94498477|ref|ZP_01305033.1| 50S ribosomal protein L4 [Sphingomonas sp. SKA58]
gi|94422020|gb|EAT07065.1| 50S ribosomal protein L4 [Sphingomonas sp. SKA58]
Length = 207
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/205 (43%), Positives = 123/205 (60%), Gaps = 1/205 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + G + L VF V R DI+HRVV WQL KR+ +T+ S+V+ TGKK
Sbjct: 3 VNVQTLDAQTAGELELNDAVFGVEPRTDILHRVVTWQLEKRRAPARATRERSDVARTGKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
RQKG G ARHG + P F GG HG + R LNKKVR LGLK+ALSA+A +G L
Sbjct: 63 FGRQKGGGTARHGDRKAPIFIGGGKAHGARARDFGHDLNKKVRALGLKMALSAKAKDGSL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + +V KTK +V + ++ N K L DG ++ A+ N+ VN+LP+VG N
Sbjct: 123 IVLDSFDVAEGKTKTLVAHLAKL-NLNKALFIDGDAVNVSFAKASANIVGVNLLPAVGAN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRMH 305
VY IL+ D+LV++R AV K+ R +
Sbjct: 182 VYDILKADSLVLTRAAVEKLEARFN 206
>gi|338811126|ref|ZP_08623362.1| ribosomal protein L4/L1e [Acetonema longum DSM 6540]
gi|337276949|gb|EGO65350.1| ribosomal protein L4/L1e [Acetonema longum DSM 6540]
Length = 208
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 134/203 (66%), Gaps = 6/203 (2%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N + G M L +VF + + ++H+ + QLA R+QGT +TKT ++V G GKK
Sbjct: 4 VAVYNVAGQKTGEMELNENVFGIQFNEAVVHQALVMQLASRRQGTAATKTRAQVRGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G++R P + GG T+ GP+PRS++ ++ +KVRRL +K ALSA+ AEG+L
Sbjct: 64 PWKQKGTGRARAGSIRSPLWVGGGTVFGPQPRSYSFRMPRKVRRLAIKSALSAKVAEGEL 123
Query: 221 LVFEDLEVPSHKTKFIVNY---YNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
LV + + KTK +++ +N +N ++ + +E ++ +++N+ V + S+
Sbjct: 124 LVVDGIGFDQPKTKQVIDLLKNFNAADNKALIITAEE---NENVEKSSRNIEGVKAITSM 180
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
GLNV+ +L HD +++++DAV +I
Sbjct: 181 GLNVFDLLHHDKILITKDAVTRI 203
>gi|110180276|gb|ABG54381.1| 23S ribosomal protein L4 [Brucella ceti]
gi|110180280|gb|ABG54383.1| 23S ribosomal protein L4 [Brucella ceti]
Length = 206
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 87/204 (42%), Positives = 124/204 (60%), Gaps = 1/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ +T +D G + L ++F + R DI+ RVVRWQLA+RQQG+H + +VS TG K
Sbjct: 3 LTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTGSK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRA H + R PQFRGG HGP R+H L KKVR LGL+ ALSA+A L
Sbjct: 63 MYKQKGTGRACHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVRALGLRHALSAKAKASDL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
++ +DL KTK +V+ + ++ + LL G I + A N+ ++VLP G+N
Sbjct: 123 IIIDDLASADAKTKQLVSQFAKL-GLENALLIGGAEIDANFQRAASNIPNIDVLPVQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL+ LV+S+ AV + +R
Sbjct: 182 VYDILRRGKLVLSKAAVEALEERF 205
>gi|197104697|ref|YP_002130074.1| 50S ribosomal protein L4 [Phenylobacterium zucineum HLK1]
gi|226730702|sp|B4R8L8.1|RL4_PHEZH RecName: Full=50S ribosomal protein L4
gi|196478117|gb|ACG77645.1| 50S ribosomal protein L4 [Phenylobacterium zucineum HLK1]
Length = 212
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 88/195 (45%), Positives = 122/195 (62%), Gaps = 2/195 (1%)
Query: 112 GFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRA 170
G + L D+F + IR DI+ R V WQLAKR+ GTH + +EVS TGKK ++QKGTG A
Sbjct: 14 GSIELPDDIFGIEEIRADILQRCVTWQLAKRRAGTHKIQVRNEVSRTGKKMYKQKGTGGA 73
Query: 171 RHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPS 230
RHG+ R QF GG HGP RSHA L KKVR L L+ ALS++A +G L+V + +
Sbjct: 74 RHGSRRAAQFVGGAKAHGPVVRSHAFDLPKKVRALALRHALSSKAKDGSLIVLDSATLTE 133
Query: 231 HKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTL 290
KT + + ++ T +++ G + LKLA +N+ V+VLP+ GLNVY +L+ TL
Sbjct: 134 AKTAALRASFEKIGVTNALVIA-GAQVDNNLKLAARNIPNVDVLPNAGLNVYDVLRRRTL 192
Query: 291 VMSRDAVNKIVDRMH 305
V+++DAV I R
Sbjct: 193 VLTKDAVAAIQARFQ 207
>gi|217976766|ref|YP_002360913.1| 50S ribosomal protein L4 [Methylocella silvestris BL2]
gi|254803745|sp|B8ELG2.1|RL4_METSB RecName: Full=50S ribosomal protein L4
gi|217502142|gb|ACK49551.1| ribosomal protein L4/L1e [Methylocella silvestris BL2]
Length = 206
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 87/204 (42%), Positives = 126/204 (61%), Gaps = 1/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I +T+ + G + L +F + R+D+I R+VR+QLAKR+ GTH TK +E++ TGKK
Sbjct: 3 IDITSLNGDSAGSIDLDDSIFGLEPRQDLIARMVRYQLAKRRAGTHKTKGRAEIARTGKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTG ARHG+ R PQFRGG GP RSHA L KKVR L LK ALSA+A G +
Sbjct: 63 LYKQKGTGSARHGSARVPQFRGGGRAFGPVVRSHAHDLPKKVRALALKHALSAKAQGGGI 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V+ D KTK + + + L+ DG + + LA +N+ ++VLP G+N
Sbjct: 123 IVWSDASATDAKTKALKASFAKA-GLLSALIIDGAEVEQNFALAARNIPQIDVLPVQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL+ + LV++R A++ + R
Sbjct: 182 VYDILRREKLVLTRAAIDALEARF 205
>gi|331268414|ref|YP_004394906.1| 50S ribosomal protein L4 [Clostridium botulinum BKT015925]
gi|329124964|gb|AEB74909.1| ribosomal protein L4/L1e [Clostridium botulinum BKT015925]
Length = 206
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 82/203 (40%), Positives = 129/203 (63%), Gaps = 5/203 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + +N + G + LA VF V + D++H+VV QLA ++QGT S KT +EVSG
Sbjct: 1 MPTVDLYNREGQKVGDLQLAEAVFAVEVNADVLHQVVVAQLANKRQGTQSAKTRAEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
GKKPWRQKGTGRAR G++R PQ+ G + PKPR + + + K +RR+ +K AL+++ E
Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWIHGGIVFAPKPREYRMAIPKSMRRVAMKSALTSKVNE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+L+V E+LE+ + KTK +V N E K +++ +E + + +N+ ++P
Sbjct: 121 QELVVLENLELEAPKTKEMVKMINAFEAKKPLIVVAES--NEVVYKSIRNIEGATIVPVN 178
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
+NVY IL+HD ++++DAV KI
Sbjct: 179 NINVYDILKHDKFIITKDAVAKI 201
>gi|329114216|ref|ZP_08242978.1| 50S ribosomal protein L4 [Acetobacter pomorum DM001]
gi|326696292|gb|EGE47971.1| 50S ribosomal protein L4 [Acetobacter pomorum DM001]
Length = 204
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 87/206 (42%), Positives = 120/206 (58%), Gaps = 3/206 (1%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ I + N G L ++F V R DI+ RVV WQLAKR+ GTH K + EVSGT
Sbjct: 1 MEIEIKTLDNSSAGSATLPDEIFAVAPRADIMARVVHWQLAKRRAGTHKVKGMGEVSGTT 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KKP+RQKGTG AR G+LR PQ+R G +HGP R H L KKVRRLGL ALS +A +G
Sbjct: 61 KKPYRQKGTGSARQGSLRAPQYRTGGAVHGPVVRDHGYDLPKKVRRLGLISALSQKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
KL+V + KT + + T L+ D + E A +NL +++LP++G
Sbjct: 121 KLIVLQSAS-GVDKTSELAKKLKSLGWT-SALIVD-AAVDESFGRAARNLPKIDILPTIG 177
Query: 279 LNVYSILQHDTLVMSRDAVNKIVDRM 304
NVY IL H+ L +++ + + +R+
Sbjct: 178 ANVYDILNHEVLAITQAGLEGLKERL 203
>gi|410668886|ref|YP_006921257.1| 50S ribosomal protein L4 [Thermacetogenium phaeum DSM 12270]
gi|409106633|gb|AFV12758.1| 50S ribosomal protein L4 [Thermacetogenium phaeum DSM 12270]
Length = 209
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 86/203 (42%), Positives = 128/203 (63%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN + G + L DVF VP+ + ++H+ V LA R+ GT +TKT EV GT
Sbjct: 1 MPKAALFNTEGVRIGEVELRDDVFGVPVNEHVLHQAVVRHLANRRAGTAATKTRGEVQGT 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R P +RGG + GP+PRS+ + +K+RRL LK ALSARA E
Sbjct: 61 GRKPWRQKGTGRARVGSIRSPLWRGGGIVFGPQPRSYRQAMPRKMRRLALKSALSARANE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
G ++V ED+++P KTK + ++ L+ G + ++ AT+N+ V + +
Sbjct: 121 GAMIVIEDIQLPEPKTKEAIKLLQSLDAVSNALIVTGREM-PLVERATRNIPGVRLTMAE 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
LN Y +L D LV++R+A++KI
Sbjct: 180 RLNTYDVLLADKLVLTREALDKI 202
>gi|27353674|dbj|BAC50664.1| 50S ribosomal protein L4 [Bradyrhizobium japonicum USDA 110]
Length = 220
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 87/207 (42%), Positives = 130/207 (62%), Gaps = 1/207 (0%)
Query: 97 QDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSG 156
+++ + VT ++ G + L+ +F + R+DII R V+WQL KRQ GTH K +E+
Sbjct: 13 REMELKVTTLEGKEAGSVQLSDAIFGLEPRQDIIARCVQWQLNKRQAGTHKAKGRAEIWR 72
Query: 157 TGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAA 216
TGKK ++QKGTG ARHG+ R PQFRGG GP RSHA L KKVR L LK ALSA+A
Sbjct: 73 TGKKMYKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHATDLPKKVRALALKHALSAKAK 132
Query: 217 EGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
+G LLV + + + KTK ++ +++ + T L+ DG ++ A +N+ ++VLP
Sbjct: 133 DGDLLVIDKAALEAAKTKALLGHFSGLGLT-NALIIDGAELNNGFAAAARNIPNMDVLPI 191
Query: 277 VGLNVYSILQHDTLVMSRDAVNKIVDR 303
G+NVY IL+ LV+++ A++ + R
Sbjct: 192 QGINVYDILRRQKLVLTKAAIDALEAR 218
>gi|399035013|ref|ZP_10732567.1| 50S ribosomal protein L4, bacterial/organelle [Rhizobium sp. CF122]
gi|398067225|gb|EJL58764.1| 50S ribosomal protein L4, bacterial/organelle [Rhizobium sp. CF122]
Length = 206
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 86/202 (42%), Positives = 123/202 (60%), Gaps = 1/202 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V +D G + L+ +F + R+DI+ RV+RWQLAK+QQGTH K ++VS TG K +
Sbjct: 5 VKTLEGKDAGKVSLSDAIFGLEPREDILARVIRWQLAKKQQGTHQAKGRADVSRTGAKMY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
+QKGTGRARH + R PQFRGG HGP RSH L KKVR LGL+ ALSA+ +++
Sbjct: 65 KQKGTGRARHHSARAPQFRGGGKAHGPVARSHEHDLPKKVRALGLRHALSAKLKSDDVII 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
++L KTK + + + + T L G + KLA +N+ ++VLP G+NVY
Sbjct: 125 IDNLVAAEAKTKALASVFETLGLT-NALFIGGAELDGNFKLAAKNIPNIDVLPIQGINVY 183
Query: 283 SILQHDTLVMSRDAVNKIVDRM 304
I++ LV+S+ AV + +R
Sbjct: 184 DIVRRGKLVLSKAAVEALEERF 205
>gi|294010614|ref|YP_003544074.1| ribosomal protein L4 [Sphingobium japonicum UT26S]
gi|390168172|ref|ZP_10220138.1| 50S ribosomal protein L4 [Sphingobium indicum B90A]
gi|292673944|dbj|BAI95462.1| ribosomal protein L4 [Sphingobium japonicum UT26S]
gi|389589238|gb|EIM67267.1| 50S ribosomal protein L4 [Sphingobium indicum B90A]
Length = 207
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 86/186 (46%), Positives = 120/186 (64%), Gaps = 1/186 (0%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
VF V R DI+HRVV WQL KR+ +T+ S+V+ TGKK RQKG G ARHG + P
Sbjct: 22 VFGVEPRTDILHRVVTWQLEKRRAPARATRERSDVARTGKKFGRQKGGGTARHGDRKAPV 81
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
F GG HG + R+ LNKKVR LGLK+ALS++A +G L+V ++L+V KTK +V +
Sbjct: 82 FIGGGKAHGARARTFGHDLNKKVRALGLKMALSSKAKDGSLIVLDNLDVAEGKTKALVAH 141
Query: 240 YNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNK 299
++ N K L DG ++ A+ N+ V++LP+VG NVY IL+ D+LV++R AV K
Sbjct: 142 LAKL-NLNKALFIDGDAVNVSFAKASANIIGVDLLPAVGANVYDILKADSLVLTRAAVEK 200
Query: 300 IVDRMH 305
+ R +
Sbjct: 201 LEARFN 206
>gi|258542028|ref|YP_003187461.1| 50S ribosomal protein L4 [Acetobacter pasteurianus IFO 3283-01]
gi|384041949|ref|YP_005480693.1| 50S ribosomal protein L4 [Acetobacter pasteurianus IFO 3283-12]
gi|384050464|ref|YP_005477527.1| 50S ribosomal protein L4 [Acetobacter pasteurianus IFO 3283-03]
gi|384053574|ref|YP_005486668.1| 50S ribosomal protein L4 [Acetobacter pasteurianus IFO 3283-07]
gi|384056806|ref|YP_005489473.1| 50S ribosomal protein L4 [Acetobacter pasteurianus IFO 3283-22]
gi|384059447|ref|YP_005498575.1| 50S ribosomal protein L4 [Acetobacter pasteurianus IFO 3283-26]
gi|384062741|ref|YP_005483383.1| 50S ribosomal protein L4 [Acetobacter pasteurianus IFO 3283-32]
gi|384118817|ref|YP_005501441.1| 50S ribosomal protein L4 [Acetobacter pasteurianus IFO 3283-01-42C]
gi|421848614|ref|ZP_16281601.1| LSU ribosomal protein L4P [Acetobacter pasteurianus NBRC 101655]
gi|421851615|ref|ZP_16284308.1| LSU ribosomal protein L4P [Acetobacter pasteurianus subsp.
pasteurianus LMG 1262 = NBRC 106471]
gi|256633106|dbj|BAH99081.1| LSU ribosomal protein L4P [Acetobacter pasteurianus IFO 3283-01]
gi|256636163|dbj|BAI02132.1| LSU ribosomal protein L4P [Acetobacter pasteurianus IFO 3283-03]
gi|256639218|dbj|BAI05180.1| LSU ribosomal protein L4P [Acetobacter pasteurianus IFO 3283-07]
gi|256642272|dbj|BAI08227.1| LSU ribosomal protein L4P [Acetobacter pasteurianus IFO 3283-22]
gi|256645327|dbj|BAI11275.1| LSU ribosomal protein L4P [Acetobacter pasteurianus IFO 3283-26]
gi|256648382|dbj|BAI14323.1| LSU ribosomal protein L4P [Acetobacter pasteurianus IFO 3283-32]
gi|256651435|dbj|BAI17369.1| LSU ribosomal protein L4P [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256654426|dbj|BAI20353.1| LSU ribosomal protein L4P [Acetobacter pasteurianus IFO 3283-12]
gi|371460494|dbj|GAB26804.1| LSU ribosomal protein L4P [Acetobacter pasteurianus NBRC 101655]
gi|371480118|dbj|GAB29511.1| LSU ribosomal protein L4P [Acetobacter pasteurianus subsp.
pasteurianus LMG 1262 = NBRC 106471]
Length = 204
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 87/206 (42%), Positives = 120/206 (58%), Gaps = 3/206 (1%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ I + N G L ++F V R DI+ RVV WQLAKR+ GTH K + EVSGT
Sbjct: 1 MEIEIKTLDNSSAGSATLPDEIFAVAPRADIMARVVHWQLAKRRAGTHKVKGMGEVSGTT 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KKP+RQKGTG AR G+LR PQ+R G +HGP R H L KKVRRLGL ALS +A +G
Sbjct: 61 KKPYRQKGTGSARQGSLRAPQYRTGGAVHGPVVRDHGYDLPKKVRRLGLISALSQKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
KL+V + KT + + T L+ D + E A +NL +++LP++G
Sbjct: 121 KLIVLQSAS-GVDKTSELAKKLKSLGWT-SALIVD-AAVDENFGRAARNLPKIDILPTIG 177
Query: 279 LNVYSILQHDTLVMSRDAVNKIVDRM 304
NVY IL H+ L +++ + + +R+
Sbjct: 178 ANVYDILNHEVLAITQAGLEGLKERL 203
>gi|374603260|ref|ZP_09676242.1| 50S ribosomal protein L4 [Paenibacillus dendritiformis C454]
gi|374391129|gb|EHQ62469.1| 50S ribosomal protein L4 [Paenibacillus dendritiformis C454]
Length = 207
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 128/200 (64%), Gaps = 1/200 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + LA VF + K ++H V QLA +QGTH KT SEVSG G+K
Sbjct: 4 VAVYNISGAQVGEIELADTVFGIEPNKHVLHDAVVMQLASMRQGTHKVKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G++R PQ++GG T+ GP PRS+A KL KKVRRL +K ALS++ ++
Sbjct: 64 PWKQKGTGRARQGSIRSPQWKGGGTVFGPTPRSYAYKLPKKVRRLAIKSALSSKVLAEQI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + L + + KTK N ++ +K L+ ++ + L+ +N+ V ++ + G+N
Sbjct: 124 IVLDQLTMNAPKTKEFAAILNNLKVDRKALVVVPEY-NDNVALSARNIPSVKLVAADGVN 182
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY +L+H+ L++++DAV K+
Sbjct: 183 VYDVLRHEKLIITKDAVQKV 202
>gi|398822815|ref|ZP_10581190.1| 50S ribosomal protein L4, bacterial/organelle [Bradyrhizobium sp.
YR681]
gi|398226521|gb|EJN12768.1| 50S ribosomal protein L4, bacterial/organelle [Bradyrhizobium sp.
YR681]
Length = 206
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 87/205 (42%), Positives = 128/205 (62%), Gaps = 1/205 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + VT ++ G + L+ +F + R+DII R V+WQL KRQ GTH K +E+ TG
Sbjct: 1 MELKVTTLEGKEAGSVQLSDTIFGLEPRQDIIARCVQWQLNKRQAGTHKAKGRAEIWRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP RSHA L KKVR L LK ALSA+A +G
Sbjct: 61 KKMYKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHATDLPKKVRALALKHALSAKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
L+V E + + KTK ++ +++ + T L+ DG ++ A +N+ ++VLP G
Sbjct: 121 DLIVIEKAALEAAKTKALLGHFSGLGLT-NALIIDGAELNNGFAAAARNIPNMDVLPIQG 179
Query: 279 LNVYSILQHDTLVMSRDAVNKIVDR 303
+NVY IL+ LV+++ A++ + R
Sbjct: 180 INVYDILRRQKLVLTKAAIDALEAR 204
>gi|88608608|ref|YP_506158.1| 50S ribosomal protein L4 [Neorickettsia sennetsu str. Miyayama]
gi|109893610|sp|Q2GED8.1|RL4_NEOSM RecName: Full=50S ribosomal protein L4
gi|88600777|gb|ABD46245.1| ribosomal protein L4 [Neorickettsia sennetsu str. Miyayama]
Length = 214
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 89/203 (43%), Positives = 119/203 (58%), Gaps = 8/203 (3%)
Query: 110 DKGFMVLAGDV------FDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWR 163
D G LAG V + P R D++ V+ WQLAKR+ GTH TK ISEVSGT +KP+R
Sbjct: 10 DFGASSLAGSVAVDRALIEAPFRPDLLSLVINWQLAKRRAGTHKTKGISEVSGTTRKPYR 69
Query: 164 QKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVF 223
QKGTGRAR G+LR PQFR G + GP R H +NKKVR L L+ ALS R AEG+L V
Sbjct: 70 QKGTGRARQGSLRAPQFRKGGIVFGPVVRQHGFSVNKKVRSLALRSALSMRFAEGRLFVL 129
Query: 224 EDLEVPSHKTKFIVNYY--NQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNV 281
E + K ++ ++ N + K L +E L A NLH+V VL NV
Sbjct: 130 ESSRLGESKAATLLKWFASNAELSVGKKFLIVTEEKNEGLLRAASNLHWVKVLWGSSANV 189
Query: 282 YSILQHDTLVMSRDAVNKIVDRM 304
Y ++ HD +++ + +V+ +V R+
Sbjct: 190 YDVVLHDFVLLEKASVDVLVKRL 212
>gi|196006758|ref|XP_002113245.1| hypothetical protein TRIADDRAFT_27010 [Trichoplax adhaerens]
gi|190583649|gb|EDV23719.1| hypothetical protein TRIADDRAFT_27010, partial [Trichoplax
adhaerens]
Length = 220
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 80/181 (44%), Positives = 118/181 (65%), Gaps = 2/181 (1%)
Query: 125 IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGT 184
+R DI+HR V WQLAKR+ GT TK EV G G+KPW QKG+GRAR G++R P FRGG
Sbjct: 1 LRIDILHRYVVWQLAKRRAGTAKTKNRGEVRGGGRKPWPQKGSGRARQGSIRAPHFRGGG 60
Query: 185 TMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQME 244
T+HGP+PRS+ +KVR + +++ALS + A+G L + + + +HKT+ + + +Q
Sbjct: 61 TVHGPRPRSYDFTFPRKVRSMAIRVALSVKFAQGDLYIVDSFGLETHKTQNLKDLLDQ-R 119
Query: 245 NTKKVLLCDGGC-IHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNKIVDR 303
N LL DG + E L+LA +N+ +VLPS LNV+ +L+ LV+S A+ + +R
Sbjct: 120 NWYSALLVDGNTYVDENLRLAARNIQKCDVLPSYALNVHMMLKRHALVLSLPALKILQER 179
Query: 304 M 304
+
Sbjct: 180 L 180
>gi|152973957|ref|YP_001373474.1| 50S ribosomal protein L4 [Bacillus cytotoxicus NVH 391-98]
gi|189029490|sp|A7GK21.1|RL4_BACCN RecName: Full=50S ribosomal protein L4
gi|152022709|gb|ABS20479.1| ribosomal protein L4/L1e [Bacillus cytotoxicus NVH 391-98]
Length = 207
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 85/200 (42%), Positives = 124/200 (62%), Gaps = 1/200 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + LA +F + + ++ V Q A +QGTH K SEVSG G+K
Sbjct: 4 VTVYNQTGSQVGEIELAEAIFGIEPNEAVLFEAVVMQRASLRQGTHKVKNRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+RGG T+ GP PRS+A KL KKVRRL +K AL+ + E +
Sbjct: 64 PWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVENNI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V EDL + + KTK +V + KK L+ ++E ++L+ +N+ V V+ + G+N
Sbjct: 124 VVLEDLVLNAPKTKDMVAVLKGLAVEKKALIVTAD-VNEAVELSARNIPGVTVITADGVN 182
Query: 281 VYSILQHDTLVMSRDAVNKI 300
V +L HD L+M++ AV K+
Sbjct: 183 VLDVLHHDKLIMTKAAVEKV 202
>gi|168187813|ref|ZP_02622448.1| ribosomal protein L4/L1 family [Clostridium botulinum C str.
Eklund]
gi|169294356|gb|EDS76489.1| ribosomal protein L4/L1 family [Clostridium botulinum C str.
Eklund]
Length = 206
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 81/203 (39%), Positives = 130/203 (64%), Gaps = 5/203 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + +N + G + LA VF V + +D++H+VV QLA ++QG S KT +EVSG
Sbjct: 1 MPTVDLYNREGQKVGDLQLADTVFAVEVNEDVLHQVVVAQLANKRQGNQSAKTRAEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
GKKPWRQKGTGRAR G++R PQ+ G + PKPR + + + K +RR+ +K AL+++ E
Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWIHGGVVFAPKPRDYKMSIPKSMRRVAMKSALTSKVNE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+L+V E LE+ + KTK +V N E+ K +++ +E + + +N+ V+P
Sbjct: 121 KELVVLESLELDAPKTKEMVKMINAFESKKPLIVVPES--NEVIYKSVRNIEGATVVPVN 178
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
+NVY IL+HD +++++AV+KI
Sbjct: 179 NINVYDILKHDKFIITKEAVSKI 201
>gi|319404424|emb|CBI78027.1| 50S ribosomal protein L4 [Bartonella rochalimae ATCC BAA-1498]
Length = 206
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 87/206 (42%), Positives = 130/206 (63%), Gaps = 3/206 (1%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
DLVI + ++ G + ++ ++F + R+DI+ RVVRWQLA+RQ+GTH ++ S+VS T
Sbjct: 2 DLVIKTLD--GKEAGKLKVSENIFGLTPREDILQRVVRWQLARRQKGTHQSQGRSDVSRT 59
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G K ++QKGTGRARH + R PQFRGG HGP RSHA L KKVR LGL++ALS +
Sbjct: 60 GAKMFKQKGTGRARHSSARAPQFRGGGKAHGPVMRSHAHNLPKKVRALGLRLALSVKLKT 119
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
L++ ++L + KTK + ++++ LL G + A N+ ++VLP
Sbjct: 120 DNLIIVDELSIRDAKTKMLNMNFSKL-GFNNALLIGGKEVDVNFFRAASNIPNIDVLPVQ 178
Query: 278 GLNVYSILQHDTLVMSRDAVNKIVDR 303
G+NVY IL+ LV+S++AV + +R
Sbjct: 179 GINVYDILRRSKLVLSKEAVETLEER 204
>gi|395787644|ref|ZP_10467236.1| 50S ribosomal protein L4 [Bartonella birtlesii LL-WM9]
gi|395410266|gb|EJF76821.1| 50S ribosomal protein L4 [Bartonella birtlesii LL-WM9]
Length = 206
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 87/206 (42%), Positives = 129/206 (62%), Gaps = 3/206 (1%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
DLVI + + G + ++ +F + R+DI+ RV+RWQLA+RQQGTH ++ S+VS T
Sbjct: 2 DLVIKTLD--GGEAGKLKVSKAIFGLVPREDILQRVIRWQLARRQQGTHQSQGRSDVSRT 59
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G K ++QKGTGRARH + R QFRGG HGP R HA L KKVR LGL++ALSA+
Sbjct: 60 GAKMFKQKGTGRARHSSARVSQFRGGGKAHGPVARGHAHGLPKKVRALGLRLALSAKLKA 119
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
L+V +++ V KTK +V++++++ LL G + A N+ +++LP
Sbjct: 120 KDLIVVDEMRVQDAKTKVLVSHFSKL-GFDNALLIGGKEVDANFSRAASNIPNIDILPIQ 178
Query: 278 GLNVYSILQHDTLVMSRDAVNKIVDR 303
G+NVY IL+ LV+S+ AV + +R
Sbjct: 179 GINVYDILRRSKLVLSKAAVEALEER 204
>gi|88657712|ref|YP_507228.1| 50S ribosomal protein L4 [Ehrlichia chaffeensis str. Arkansas]
gi|109893594|sp|Q2GH55.1|RL4_EHRCR RecName: Full=50S ribosomal protein L4
gi|88599169|gb|ABD44638.1| ribosomal protein L4 [Ehrlichia chaffeensis str. Arkansas]
Length = 205
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 87/204 (42%), Positives = 127/204 (62%), Gaps = 2/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N ++ G + L +F V R DI+ VV WQL+KR+ GTH KTI ++SGT K
Sbjct: 3 VNIINVNSDRIGTIDLNPLIFSVNYRPDILKMVVDWQLSKRRAGTHKAKTIGDISGTTAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P RQK TGRAR G+LR PQFRGG + GP RSHA LNKKVR LGLK+ALS + + KL
Sbjct: 63 PHRQKHTGRARQGSLRSPQFRGGAVIFGPVVRSHAYSLNKKVRNLGLKVALSLKNSCNKL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
L+ + ++V KT ++ + E+ K L+ D ++ + + +NLH V +L +G N
Sbjct: 123 LILDSIDVNFVKTTQVLQFIKNFEH-KSFLIIDKD-YNKSVVCSCRNLHNVTLLKQIGTN 180
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
V IL+HD ++++ AV + +R+
Sbjct: 181 VLDILRHDCIILTVGAVKYLEERL 204
>gi|421858368|ref|ZP_16290638.1| ribosomal protein L4 [Paenibacillus popilliae ATCC 14706]
gi|410832047|dbj|GAC41075.1| ribosomal protein L4 [Paenibacillus popilliae ATCC 14706]
Length = 207
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 127/200 (63%), Gaps = 1/200 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + LA VF + K ++H V QLA +QGTH KT SEVSG G+K
Sbjct: 4 VAVYNISGAQVGEIELADTVFGIEPNKHVLHDAVVMQLASMRQGTHKVKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G++R PQ++GG T+ GP PRS+A KL KKVRRL +K ALS++ ++
Sbjct: 64 PWKQKGTGRARQGSIRSPQWKGGGTVFGPTPRSYAYKLPKKVRRLAIKSALSSKVLAEQI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + L + + KTK N + +K L+ ++ + L+ +N+ V ++ + G+N
Sbjct: 124 IVLDQLTMNAPKTKEFAAILNNLNVDRKALVVMPEY-NDNVALSARNIPSVKLVAADGVN 182
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY +L+H+ L++++DAV K+
Sbjct: 183 VYDVLRHEKLIITKDAVQKV 202
>gi|163938119|ref|YP_001643003.1| 50S ribosomal protein L4 [Bacillus weihenstephanensis KBAB4]
gi|229009620|ref|ZP_04166846.1| 50S ribosomal protein L4 [Bacillus mycoides DSM 2048]
gi|229015513|ref|ZP_04172511.1| 50S ribosomal protein L4 [Bacillus cereus AH1273]
gi|229021722|ref|ZP_04178304.1| 50S ribosomal protein L4 [Bacillus cereus AH1272]
gi|229053957|ref|ZP_04195391.1| 50S ribosomal protein L4 [Bacillus cereus AH603]
gi|229131119|ref|ZP_04260031.1| 50S ribosomal protein L4 [Bacillus cereus BDRD-ST196]
gi|229165099|ref|ZP_04292894.1| 50S ribosomal protein L4 [Bacillus cereus AH621]
gi|423370693|ref|ZP_17348098.1| 50S ribosomal protein L4 [Bacillus cereus VD142]
gi|423393436|ref|ZP_17370662.1| 50S ribosomal protein L4 [Bacillus cereus BAG1X1-3]
gi|423421723|ref|ZP_17398812.1| 50S ribosomal protein L4 [Bacillus cereus BAG3X2-1]
gi|423456268|ref|ZP_17433121.1| 50S ribosomal protein L4 [Bacillus cereus BAG5X1-1]
gi|423473136|ref|ZP_17449878.1| 50S ribosomal protein L4 [Bacillus cereus BAG6O-2]
gi|423485410|ref|ZP_17462092.1| 50S ribosomal protein L4 [Bacillus cereus BtB2-4]
gi|423491135|ref|ZP_17467779.1| 50S ribosomal protein L4 [Bacillus cereus CER057]
gi|423502069|ref|ZP_17478686.1| 50S ribosomal protein L4 [Bacillus cereus CER074]
gi|423514625|ref|ZP_17491132.1| 50S ribosomal protein L4 [Bacillus cereus HuA2-1]
gi|423514963|ref|ZP_17491444.1| 50S ribosomal protein L4 [Bacillus cereus HuA2-4]
gi|423526387|ref|ZP_17502836.1| 50S ribosomal protein L4 [Bacillus cereus HuA4-10]
gi|423556893|ref|ZP_17533196.1| 50S ribosomal protein L4 [Bacillus cereus MC67]
gi|423597000|ref|ZP_17573010.1| 50S ribosomal protein L4 [Bacillus cereus VD048]
gi|423602360|ref|ZP_17578360.1| 50S ribosomal protein L4 [Bacillus cereus VD078]
gi|423614599|ref|ZP_17590456.1| 50S ribosomal protein L4 [Bacillus cereus VD107]
gi|423665376|ref|ZP_17640515.1| 50S ribosomal protein L4 [Bacillus cereus VDM022]
gi|423671560|ref|ZP_17646564.1| 50S ribosomal protein L4 [Bacillus cereus VDM034]
gi|423672636|ref|ZP_17647575.1| 50S ribosomal protein L4 [Bacillus cereus VDM062]
gi|226730619|sp|A9VP78.1|RL4_BACWK RecName: Full=50S ribosomal protein L4
gi|163860316|gb|ABY41375.1| ribosomal protein L4/L1e [Bacillus weihenstephanensis KBAB4]
gi|228618362|gb|EEK75392.1| 50S ribosomal protein L4 [Bacillus cereus AH621]
gi|228652332|gb|EEL08257.1| 50S ribosomal protein L4 [Bacillus cereus BDRD-ST196]
gi|228721375|gb|EEL72896.1| 50S ribosomal protein L4 [Bacillus cereus AH603]
gi|228739590|gb|EEL90004.1| 50S ribosomal protein L4 [Bacillus cereus AH1272]
gi|228745800|gb|EEL95804.1| 50S ribosomal protein L4 [Bacillus cereus AH1273]
gi|228751642|gb|EEM01442.1| 50S ribosomal protein L4 [Bacillus mycoides DSM 2048]
gi|401073429|gb|EJP81851.1| 50S ribosomal protein L4 [Bacillus cereus VD142]
gi|401096842|gb|EJQ04879.1| 50S ribosomal protein L4 [Bacillus cereus BAG3X2-1]
gi|401130867|gb|EJQ38522.1| 50S ribosomal protein L4 [Bacillus cereus BAG5X1-1]
gi|401151463|gb|EJQ58914.1| 50S ribosomal protein L4 [Bacillus cereus CER074]
gi|401162060|gb|EJQ69419.1| 50S ribosomal protein L4 [Bacillus cereus CER057]
gi|401163437|gb|EJQ70783.1| 50S ribosomal protein L4 [Bacillus cereus HuA4-10]
gi|401168464|gb|EJQ75727.1| 50S ribosomal protein L4 [Bacillus cereus HuA2-4]
gi|401194208|gb|EJR01200.1| 50S ribosomal protein L4 [Bacillus cereus MC67]
gi|401218177|gb|EJR24861.1| 50S ribosomal protein L4 [Bacillus cereus VD048]
gi|401225899|gb|EJR32443.1| 50S ribosomal protein L4 [Bacillus cereus VD078]
gi|401237443|gb|EJR43895.1| 50S ribosomal protein L4 [Bacillus cereus VD107]
gi|401290283|gb|EJR95978.1| 50S ribosomal protein L4 [Bacillus cereus VDM022]
gi|401291949|gb|EJR97614.1| 50S ribosomal protein L4 [Bacillus cereus VDM034]
gi|401311496|gb|EJS16791.1| 50S ribosomal protein L4 [Bacillus cereus VDM062]
gi|401629543|gb|EJS47356.1| 50S ribosomal protein L4 [Bacillus cereus BAG1X1-3]
gi|402426634|gb|EJV58755.1| 50S ribosomal protein L4 [Bacillus cereus BAG6O-2]
gi|402441601|gb|EJV73551.1| 50S ribosomal protein L4 [Bacillus cereus BtB2-4]
gi|402442025|gb|EJV73969.1| 50S ribosomal protein L4 [Bacillus cereus HuA2-1]
Length = 207
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 85/200 (42%), Positives = 123/200 (61%), Gaps = 1/200 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + LA +F + + ++ V Q A +QGTH KT SEV G G+K
Sbjct: 4 VTVYNQTGSQVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+RGG T+ GP PRS+A KL KKVRRL +K AL+ + E +
Sbjct: 64 PWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVENNI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V EDL + + KTK +V + KK L+ +E ++L+ +N+ V V+ + G+N
Sbjct: 124 VVLEDLVLNAPKTKDMVAVLKGLTVEKKALIVTADA-NESVELSARNIPGVTVITADGVN 182
Query: 281 VYSILQHDTLVMSRDAVNKI 300
V +L HD L+M++ AV K+
Sbjct: 183 VLDVLHHDKLIMTKAAVEKV 202
>gi|423480255|ref|ZP_17456945.1| 50S ribosomal protein L4 [Bacillus cereus BAG6X1-2]
gi|401149260|gb|EJQ56735.1| 50S ribosomal protein L4 [Bacillus cereus BAG6X1-2]
Length = 207
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 85/200 (42%), Positives = 123/200 (61%), Gaps = 1/200 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + LA +F + + ++ V Q A +QGTH KT SEV G G+K
Sbjct: 4 VTVYNQTGSQVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+RGG T+ GP PRS+A KL KKVRRL +K AL+ + E +
Sbjct: 64 PWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVENNI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V EDL + + KTK +V + KK L+ +E ++L+ +N+ V V+ + G+N
Sbjct: 124 VVLEDLVLNAPKTKDMVTVLKGLTVEKKALIVTADA-NESVELSARNIPGVTVITADGVN 182
Query: 281 VYSILQHDTLVMSRDAVNKI 300
V +L HD L+M++ AV K+
Sbjct: 183 VLDVLHHDKLIMTKAAVAKV 202
>gi|254470116|ref|ZP_05083520.1| ribosomal protein, L4/L1 family [Pseudovibrio sp. JE062]
gi|374332220|ref|YP_005082404.1| 50S ribosomal protein L4 [Pseudovibrio sp. FO-BEG1]
gi|211960427|gb|EEA95623.1| ribosomal protein, L4/L1 family [Pseudovibrio sp. JE062]
gi|359345008|gb|AEV38382.1| 50S ribosomal protein L4 [Pseudovibrio sp. FO-BEG1]
Length = 205
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 94/204 (46%), Positives = 123/204 (60%), Gaps = 1/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + G + ++ ++F + R D+I RVVRWQLAKRQ GTH + SEV+GT KK
Sbjct: 3 LEVKTLGGKAAGSITVSDEIFGLEPRIDLIQRVVRWQLAKRQAGTHKSLGRSEVNGTTKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
RQKG+G ARHG + PQFRGG GP R HA L KKVR LGLK ALSA+AA G L
Sbjct: 63 FVRQKGSGGARHGNRKAPQFRGGGKAFGPVVREHAHDLPKKVRALGLKHALSAKAASGNL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+ ED + KTK + + T L DG + LAT+N+ V+VLP G+N
Sbjct: 123 YIVEDAKAAEAKTKALKEQLGSLGLT-SALFVDGAEVDANFGLATRNIPLVDVLPVQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL+ DTLV+++ AV + +R
Sbjct: 182 VYDILRRDTLVLTKAAVAALEERF 205
>gi|440785462|ref|ZP_20962219.1| 50S ribosomal protein L4 [Clostridium pasteurianum DSM 525]
gi|440218358|gb|ELP57580.1| 50S ribosomal protein L4 [Clostridium pasteurianum DSM 525]
Length = 206
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 84/203 (41%), Positives = 128/203 (63%), Gaps = 5/203 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN++ G + L+ +VF + D +H+VV LA ++QG S KT SEVSG
Sbjct: 1 MPTVGLFNKEGKKVGDIELSSEVFGTEVNSDALHQVVVALLANKRQGNQSAKTRSEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G KPWRQKGTGRAR G++R PQ+ G + PKPR + + + K +RR+ +K ALS++ AE
Sbjct: 61 GIKPWRQKGTGRARQGSIRSPQWIHGGIVFAPKPRDYRMSVPKSMRRVAMKSALSSKVAE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+++V EDLE KTK +V N N+KK L+ ++ + + +N+ V V+P+
Sbjct: 121 NEIIVLEDLEFEVPKTKEVVKLLNAF-NSKKALIVVAES-NQNVYKSVRNIQGVTVIPAN 178
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
LNVY IL++D ++++DAV+KI
Sbjct: 179 NLNVYDILKYDNFIITKDAVSKI 201
>gi|132978|sp|P28601.1|RL4_BACST RecName: Full=50S ribosomal protein L4; Short=BL4
gi|40103|emb|CAA47403.1| ribosomal protein L4 [Geobacillus stearothermophilus]
Length = 207
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 85/203 (41%), Positives = 128/203 (63%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N++ G + L VF + K ++ V Q A +QGTH TK +EVSG
Sbjct: 1 MPKVALYNQNGQTVGEIELNDAVFGIEPNKHVLFEAVIMQRASMRQGTHKTKNRAEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG T+ GP PRS++ KL KKVRRL +K ALS++ E
Sbjct: 61 GRKPWRQKGTGRARQGSIRAPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++V + L + + KTK +V N + +K L+ ++E + L+ +N+ V V+P+
Sbjct: 121 NDIVVLDQLSLEAPKTKEMVKILNNLSVDRKALIVT-DELNENVYLSARNIPGVKVVPAN 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
G+NV +L HD LV+++ AV K+
Sbjct: 180 GINVLDVLNHDKLVITKAAVEKV 202
>gi|228989320|ref|ZP_04149311.1| 50S ribosomal protein L4 [Bacillus pseudomycoides DSM 12442]
gi|228995502|ref|ZP_04155170.1| 50S ribosomal protein L4 [Bacillus mycoides Rock3-17]
gi|229003127|ref|ZP_04160973.1| 50S ribosomal protein L4 [Bacillus mycoides Rock1-4]
gi|228758090|gb|EEM07289.1| 50S ribosomal protein L4 [Bacillus mycoides Rock1-4]
gi|228764231|gb|EEM13110.1| 50S ribosomal protein L4 [Bacillus mycoides Rock3-17]
gi|228770398|gb|EEM18971.1| 50S ribosomal protein L4 [Bacillus pseudomycoides DSM 12442]
Length = 207
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 85/200 (42%), Positives = 123/200 (61%), Gaps = 1/200 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + LA +F + + ++ V Q A +QGTH KT SEV G G+K
Sbjct: 4 VTVYNQTGSQVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+RGG T+ GP PRS+A KL KKVRRL +K AL+ + E +
Sbjct: 64 PWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVENNI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V EDL + + KTK +V + KK L+ +E ++L+ +N+ V V+ + G+N
Sbjct: 124 VVLEDLVLNAPKTKDMVAVLKGLTVEKKALIVTADA-NEAVELSARNIPGVTVITADGVN 182
Query: 281 VYSILQHDTLVMSRDAVNKI 300
V +L HD L+M++ AV K+
Sbjct: 183 VLDVLHHDKLIMTKAAVEKV 202
>gi|91977651|ref|YP_570310.1| 50S ribosomal protein L4 [Rhodopseudomonas palustris BisB5]
gi|123762621|sp|Q134T0.1|RL4_RHOPS RecName: Full=50S ribosomal protein L4
gi|91684107|gb|ABE40409.1| LSU ribosomal protein L4P [Rhodopseudomonas palustris BisB5]
Length = 206
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 87/204 (42%), Positives = 127/204 (62%), Gaps = 1/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ VT ++ G + L+ +F + R+DI+ R V WQLAKRQ GTH K +E+ TGKK
Sbjct: 3 LKVTTLEGKEAGSVQLSDAIFGLEPRQDIVQRCVIWQLAKRQAGTHKAKGRAEIWRTGKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTG ARHG+ R PQFRGG GP RSHAI L KKVR L L+ ALSA+A G L
Sbjct: 63 MYKQKGTGGARHGSQRVPQFRGGGRAFGPVVRSHAIDLPKKVRALALRHALSAKAKGGGL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + E+ + KTK +V ++ + T L+ DG ++ A +N+ ++VLP G+N
Sbjct: 123 IVIDKAELEAAKTKALVGAFSGLGLT-NALIIDGAEVNNGFATAARNIPNIDVLPVQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY I++ LV+++ A++ + R
Sbjct: 182 VYDIVRRRKLVLTKAALDALEARF 205
>gi|393719126|ref|ZP_10339053.1| 50S ribosomal protein L4 [Sphingomonas echinoides ATCC 14820]
Length = 212
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 89/209 (42%), Positives = 121/209 (57%), Gaps = 4/209 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V +F + + L +VF + R DI+HRVV WQL KR+ T+ ++V+ TGKK
Sbjct: 3 VKVQSFADTAGADIELNDEVFGLDPRADILHRVVTWQLEKRRATASGTRERADVARTGKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
RQKG G ARHG R P F GG HG + R LNKKVR LGLK+ALS+ A G L
Sbjct: 63 FGRQKGGGTARHGDRRAPIFVGGGKAHGQRTRDFNPGLNKKVRALGLKMALSSHAQAGTL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENT----KKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
+V + L V KTK ++ + ++ K L+ DG + LA NLH +NV+P+
Sbjct: 123 VVMDSLTVAESKTKTLIADWAKLGPDGGWGKTALVIDGAAVETSFALAAGNLHTINVMPA 182
Query: 277 VGLNVYSILQHDTLVMSRDAVNKIVDRMH 305
G NVY IL+HDTLV++R AV + R +
Sbjct: 183 AGANVYDILKHDTLVLTRAAVEMLEARFN 211
>gi|99080088|ref|YP_612242.1| 50S ribosomal protein L4 [Ruegeria sp. TM1040]
gi|122398432|sp|Q1GK36.1|RL4_SILST RecName: Full=50S ribosomal protein L4
gi|99036368|gb|ABF62980.1| LSU ribosomal protein L4P [Ruegeria sp. TM1040]
Length = 205
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 87/193 (45%), Positives = 118/193 (61%), Gaps = 2/193 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ D+F + R DI+HRVVRWQ Q GTH KT SE S + KK +RQKGTG AR
Sbjct: 14 GDIELSEDLFGLEPRADILHRVVRWQRNNAQAGTHKVKTRSETSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG P FR G GP PRSH L KK R+LGL+ ALSA+A G+L+V E+ E
Sbjct: 74 HGDRNAPIFRKGGIYKGPTPRSHGHDLTKKFRKLGLRHALSAKAKAGELVVIENAEAEG- 132
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KT + + K+ L+ DG ++E A +N+ +++LPS+G NVY IL+ DTLV
Sbjct: 133 KTAALAKQVANL-GWKRALVIDGAAVNEGFARAAKNIEGLDILPSMGANVYDILKRDTLV 191
Query: 292 MSRDAVNKIVDRM 304
+++ AV + R+
Sbjct: 192 LTKSAVEALEARL 204
>gi|229083431|ref|ZP_04215779.1| 50S ribosomal protein L4 [Bacillus cereus Rock3-44]
gi|228699864|gb|EEL52501.1| 50S ribosomal protein L4 [Bacillus cereus Rock3-44]
Length = 207
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 85/200 (42%), Positives = 123/200 (61%), Gaps = 1/200 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + LA +F + + ++ V Q A +QGTH KT SEV G G+K
Sbjct: 4 VTVYNQTGSQVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+RGG T+ GP PRS+A KL KKVRRL +K AL+ + E +
Sbjct: 64 PWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVENNI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V EDL + + KTK +V + KK L+ +E ++L+ +N+ V V+ + G+N
Sbjct: 124 VVLEDLVLNAPKTKDMVAVLKGLPVEKKALIVTADA-NESVELSARNIPGVTVITADGVN 182
Query: 281 VYSILQHDTLVMSRDAVNKI 300
V +L HD L+M++ AV K+
Sbjct: 183 VLDVLHHDKLIMTKAAVEKV 202
>gi|399889063|ref|ZP_10774940.1| 50S ribosomal protein L4 [Clostridium arbusti SL206]
Length = 206
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 130/203 (64%), Gaps = 5/203 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN++ G + L+ ++F + D +H+VV QLA ++QG S KT SEVSG
Sbjct: 1 MPTVGLFNQEGKKVGDIELSTNIFGAEVNTDALHQVVVAQLANKRQGNQSAKTRSEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G KPWRQKGTGRAR G++R PQ+ G + PKPR + I + K +RR+ +K ALS++ AE
Sbjct: 61 GIKPWRQKGTGRARQGSIRSPQWIHGGIVFAPKPRDYRISVPKSMRRVAMKSALSSKVAE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+++V E LE+ KTK ++ N ++ K +++ +E + + +N+ ++V+P+
Sbjct: 121 NEIIVLEGLELEVPKTKEMIKMLNAFDSKKALIVVAES--NENVYKSVRNIEGISVIPAN 178
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
LNVY IL++D ++++DAV+KI
Sbjct: 179 NLNVYDILKYDNFIITKDAVSKI 201
>gi|118444236|ref|YP_877199.1| 50S ribosomal protein L4 [Clostridium novyi NT]
gi|166234658|sp|A0PXU7.1|RL4_CLONN RecName: Full=50S ribosomal protein L4
gi|118134692|gb|ABK61736.1| ribosomal protein L4/L1 family [Clostridium novyi NT]
Length = 206
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 81/203 (39%), Positives = 129/203 (63%), Gaps = 5/203 (2%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + +N + G + LA VF V + +D++H+VV QLA ++QG S KT +EVSG
Sbjct: 1 MPTVDLYNIEGQKVGDLQLAETVFAVEVNEDVLHQVVVAQLANKRQGNQSAKTRAEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
GKKPWRQKGTGRAR G++R PQ+ G + PKPR + + + K +RR+ +K AL+++ E
Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWIHGGVVFAPKPRDYKMSIPKSMRRVAMKSALTSKVNE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+L+V E LE+ + KTK +V N E K +++ +E + + +N+ V+P
Sbjct: 121 NELVVLESLELDAPKTKEMVKMINAFEGKKPLIVVPES--NEVIYKSVRNIEGATVVPVN 178
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
+NVY IL+HD +++++AV+KI
Sbjct: 179 NINVYDILKHDKFIITKEAVSKI 201
>gi|149915845|ref|ZP_01904369.1| 50S ribosomal protein L4 [Roseobacter sp. AzwK-3b]
gi|149810168|gb|EDM70014.1| 50S ribosomal protein L4 [Roseobacter sp. AzwK-3b]
Length = 205
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 92/193 (47%), Positives = 116/193 (60%), Gaps = 2/193 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L D+F + R DI+HRVVRWQ K QQGTH KT SE S + KK +RQKGTG AR
Sbjct: 14 GSVDLGEDIFGLDPRADILHRVVRWQRNKAQQGTHKVKTRSETSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG P FR G GP PRSHA L KKVR LGLK ALSA+A G+L+V D
Sbjct: 74 HGDRNAPIFRKGGIYKGPTPRSHAHDLPKKVRMLGLKHALSAKAKAGELVVL-DAATSDG 132
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KT + + K+VL+ DG ++ A N+ V+VLPS+G NVY IL+ DTLV
Sbjct: 133 KTGALAKQIKDL-GWKRVLIIDGAEVNADFARAAANIEGVDVLPSMGANVYDILKRDTLV 191
Query: 292 MSRDAVNKIVDRM 304
+++ V + R+
Sbjct: 192 ITKAGVEALEARL 204
>gi|86749416|ref|YP_485912.1| 50S ribosomal protein L4 [Rhodopseudomonas palustris HaA2]
gi|109893629|sp|Q2IXQ9.1|RL4_RHOP2 RecName: Full=50S ribosomal protein L4
gi|86572444|gb|ABD07001.1| LSU ribosomal protein L4P [Rhodopseudomonas palustris HaA2]
Length = 206
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 88/204 (43%), Positives = 126/204 (61%), Gaps = 1/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ VT ++ G + L+ +F + R DI+ R V WQLAKRQ GTH K +EV TGKK
Sbjct: 3 LKVTTLEGQEAGSVQLSDAIFGLEPRNDIVQRCVIWQLAKRQAGTHKAKGRAEVWRTGKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTG ARHG+ R PQFRGG GP RSHAI L KKVR L L+ ALSA+A G L
Sbjct: 63 MYKQKGTGGARHGSQRVPQFRGGGRAFGPVVRSHAIDLPKKVRALALRHALSAKAKGGGL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + E+ + KTK +V ++ + T L+ DG ++ A +N+ ++VLP G+N
Sbjct: 123 IVIDKAELEAAKTKALVGAFSGLGLT-NALIIDGAEVNTGFATAARNIPNIDVLPIQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY I++ LV+++ A++ + R
Sbjct: 182 VYDIVRRRKLVLTKAALDALEARF 205
>gi|161511095|ref|NP_772039.2| 50S ribosomal protein L4 [Bradyrhizobium japonicum USDA 110]
gi|384218079|ref|YP_005609245.1| 50S ribosomal protein L4 [Bradyrhizobium japonicum USDA 6]
gi|46577249|sp|Q89J85.2|RL4_BRAJA RecName: Full=50S ribosomal protein L4
gi|354956978|dbj|BAL09657.1| 50S ribosomal protein L4 [Bradyrhizobium japonicum USDA 6]
Length = 206
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 87/205 (42%), Positives = 128/205 (62%), Gaps = 1/205 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + VT ++ G + L+ +F + R+DII R V+WQL KRQ GTH K +E+ TG
Sbjct: 1 MELKVTTLEGKEAGSVQLSDAIFGLEPRQDIIARCVQWQLNKRQAGTHKAKGRAEIWRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP RSHA L KKVR L LK ALSA+A +G
Sbjct: 61 KKMYKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHATDLPKKVRALALKHALSAKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
LLV + + + KTK ++ +++ + T L+ DG ++ A +N+ ++VLP G
Sbjct: 121 DLLVIDKAALEAAKTKALLGHFSGLGLT-NALIIDGAELNNGFAAAARNIPNMDVLPIQG 179
Query: 279 LNVYSILQHDTLVMSRDAVNKIVDR 303
+NVY IL+ LV+++ A++ + R
Sbjct: 180 INVYDILRRQKLVLTKAAIDALEAR 204
>gi|423399384|ref|ZP_17376582.1| 50S ribosomal protein L4 [Bacillus cereus BAG2X1-1]
gi|423409840|ref|ZP_17386989.1| 50S ribosomal protein L4 [Bacillus cereus BAG2X1-3]
gi|401644484|gb|EJS62174.1| 50S ribosomal protein L4 [Bacillus cereus BAG2X1-1]
gi|401652380|gb|EJS69937.1| 50S ribosomal protein L4 [Bacillus cereus BAG2X1-3]
Length = 207
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 85/200 (42%), Positives = 123/200 (61%), Gaps = 1/200 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + LA +F + + ++ V Q A +QGTH KT SEV G G+K
Sbjct: 4 VTVYNQTGSQVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+RGG T+ GP PRS+A KL KKVRRL +K AL+ + E +
Sbjct: 64 PWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVENNI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V EDL + + KTK +V + KK L+ +E ++L+ +N+ V V+ + G+N
Sbjct: 124 VVLEDLVLNAPKTKDMVAVLKGLTVEKKALIVTADA-NESVELSARNIPGVTVITADGVN 182
Query: 281 VYSILQHDTLVMSRDAVNKI 300
V +L HD L+M++ AV K+
Sbjct: 183 VLDVLHHDKLIMTKAAVAKV 202
>gi|338739397|ref|YP_004676359.1| 50S ribosomal protein L4 [Hyphomicrobium sp. MC1]
gi|337759960|emb|CCB65791.1| 50S ribosomal protein L4 [Hyphomicrobium sp. MC1]
Length = 206
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 86/201 (42%), Positives = 124/201 (61%), Gaps = 1/201 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
VT+ G + LA D+F + +R D+IHR+VR+Q KR GTH + SEV+ TGKK +
Sbjct: 5 VTSLDAGKSGDIELADDIFGLEVRNDLIHRMVRYQTLKRMAGTHHAQDRSEVAVTGKKMY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
+QKGTG ARHG PQFRGG GPKPRSHAI+L KKVR L L+ ALS++A G+++V
Sbjct: 65 KQKGTGGARHGDKSAPQFRGGGKAFGPKPRSHAIELPKKVRALALRHALSSKAKAGEIVV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
+ KT + + ++ + + L+ DG + A +N+ ++VLP G+NVY
Sbjct: 125 IDKATSAEGKTTALKAQFAKL-SLENALIIDGAELEVNFTRAARNIPNIDVLPIQGINVY 183
Query: 283 SILQHDTLVMSRDAVNKIVDR 303
IL+ LV++R AV + +R
Sbjct: 184 DILRRKKLVLTRAAVAALEER 204
>gi|326792606|ref|YP_004310427.1| 50S ribosomal protein L4/L1e [Clostridium lentocellum DSM 5427]
gi|326543370|gb|ADZ85229.1| ribosomal protein L4/L1e [Clostridium lentocellum DSM 5427]
Length = 207
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 124/200 (62%), Gaps = 1/200 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + L +F V +++ ++H+ V LA R+QGT S KT +EV G G+K
Sbjct: 4 VAVLNMTGAQVGEVELNDSIFAVEVKEHLVHQAVVAHLANRRQGTQSAKTRAEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G++R Q+ GG PKPR+++IK+N K RRL LK AL++R E K
Sbjct: 64 PWKQKGTGRARQGSIRAVQWVGGGVAFAPKPRNYSIKVNAKERRLALKSALTSRVNESKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + LE+ KTK + N ++ K +++ +G + + L+ +N+ + +N
Sbjct: 124 IVLDSLELAEIKTKAMANVLEALKLNKALIVTEGEA-SKNVMLSAKNIQGIKTAAVNNIN 182
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY IL++DT V+++DA+NKI
Sbjct: 183 VYDILKYDTFVVTKDALNKI 202
>gi|258513641|ref|YP_003189863.1| 50S ribosomal protein L4 [Desulfotomaculum acetoxidans DSM 771]
gi|257777346|gb|ACV61240.1| ribosomal protein L4/L1e [Desulfotomaculum acetoxidans DSM 771]
Length = 206
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 88/206 (42%), Positives = 126/206 (61%), Gaps = 11/206 (5%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN E G + L +VF + + + ++H V QLA R+QGTH TKT EV G
Sbjct: 1 MPTVALFNIKGEQVGEVALKDEVFGIEVNESVLHDAVVMQLAGRRQGTHDTKTRGEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
GKKPWRQKGTGRARHGT+R P +RGG + GP PR++ KL KKVRRL LK ALS++
Sbjct: 61 GKKPWRQKGTGRARHGTIRSPIWRGGGIVFGPHPRTYKYKLPKKVRRLALKSALSSKVLA 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC---DGGCIHEKLKLATQNLHYVNVL 274
G + V + L + KTK +V ++ K +L+ D I + +N+ + +
Sbjct: 121 GNIKVLDALSMEMPKTKEMVGILKNLQVDKALLVIADKDMNVIK-----SARNIPGIKPV 175
Query: 275 PSVGLNVYSILQHDTLVMSRDAVNKI 300
+ G+NVY +L+H TLV+++DAV+K+
Sbjct: 176 GAAGVNVYDLLKHTTLVITKDAVSKV 201
>gi|28212174|ref|NP_783118.1| 50S ribosomal protein L4 [Clostridium tetani E88]
gi|46577246|sp|Q890P0.1|RL4_CLOTE RecName: Full=50S ribosomal protein L4
gi|28204618|gb|AAO37055.1| LSU ribosomal protein L1E(= L4P) [Clostridium tetani E88]
Length = 206
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 81/203 (39%), Positives = 130/203 (64%), Gaps = 5/203 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN++ G L+ VF V + K+++H+V+ QLA ++QGT S+KT +EVSG
Sbjct: 1 MPTVGLFNKEGQKVGDFQLSDKVFGVEVNKEVLHQVIVAQLANKRQGTQSSKTRAEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+ G + PKPR +++ + K ++R+ +K ALS++ E
Sbjct: 61 GRKPWRQKGTGRARQGSIRAPQWIKGGVVFAPKPRDYSMAIPKSMKRVAMKSALSSKVQE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++++ E LE + KTK IV N KK L+ ++ + + +N+ V VLP
Sbjct: 121 NEIVILESLEADAPKTKEIVKMLAAF-NAKKTLIVTEES-NKNIYKSARNIEGVTVLPVN 178
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
+NVY IL++D ++++DAV+KI
Sbjct: 179 NINVYDILRYDKFIITKDAVSKI 201
>gi|381201001|ref|ZP_09908132.1| 50S ribosomal protein L4 [Sphingobium yanoikuyae XLDN2-5]
gi|427408973|ref|ZP_18899175.1| 50S ribosomal protein L4 [Sphingobium yanoikuyae ATCC 51230]
gi|425713283|gb|EKU76297.1| 50S ribosomal protein L4 [Sphingobium yanoikuyae ATCC 51230]
Length = 207
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 88/194 (45%), Positives = 120/194 (61%), Gaps = 1/194 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L VF + R DI+HRVV WQL KR+ T+ S+V+ TGKK RQKG G AR
Sbjct: 14 GELELNDAVFGLEPRADILHRVVTWQLEKRRGTARGTRERSDVARTGKKFGRQKGGGTAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG R P F GG HG + R LNKKVR LGLK+ALS++ +G L++ ++L+V
Sbjct: 74 HGDRRAPVFIGGGKAHGARVRDFNPSLNKKVRALGLKMALSSKVKDGSLIILDNLDVAEG 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KTK +V ++ N KVL DG ++ A+ N+ VN+LP+VG NVY IL+ D+LV
Sbjct: 134 KTKALVANLAKL-NLNKVLFIDGDAVNVSFAKASANIVGVNLLPAVGANVYDILKADSLV 192
Query: 292 MSRDAVNKIVDRMH 305
++R AV K+ R +
Sbjct: 193 LTRAAVEKLEARFN 206
>gi|260577180|ref|ZP_05845157.1| ribosomal protein L4/L1e [Rhodobacter sp. SW2]
gi|259020654|gb|EEW23973.1| ribosomal protein L4/L1e [Rhodobacter sp. SW2]
Length = 206
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 121/193 (62%), Gaps = 1/193 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +F + R DI+HRVVRWQ AK Q GTHST T +EVS + KK ++QKGTG AR
Sbjct: 14 GSITLDEALFGLEPRADILHRVVRWQRAKAQAGTHSTLTRAEVSYSTKKIYKQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG+ + P FR G + GP PRSHA L KK R LGL+ ALSA+A G+L++ + +
Sbjct: 74 HGSKKAPIFRHGGVVKGPTPRSHAHDLPKKFRALGLRHALSAKAQAGELIILDVATMADA 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
K+ + ++ K+VL+ DG + LA +N+ ++VLPS+G NVY IL+ D LV
Sbjct: 134 KSSILAKAAKEL-GWKRVLIIDGAEVDANFALAARNIEGIDVLPSMGANVYDILKRDQLV 192
Query: 292 MSRDAVNKIVDRM 304
+++ V + R+
Sbjct: 193 ITKAGVEALEARL 205
>gi|402849274|ref|ZP_10897514.1| LSU ribosomal protein L4p (L1e) [Rhodovulum sp. PH10]
gi|402500587|gb|EJW12259.1| LSU ribosomal protein L4p (L1e) [Rhodovulum sp. PH10]
Length = 206
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 83/205 (40%), Positives = 125/205 (60%), Gaps = 1/205 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + V E G + L ++F + R D+I R + WQL++RQ+GTH+ K +E+ TG
Sbjct: 1 MQLDVKTLEGEAAGSIDLDQEIFGLEPRADLIQRCIVWQLSRRQRGTHAVKNRAEIWRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP+ RSHAI L KKVR L L+ ALSA+A +G
Sbjct: 61 KKMYKQKGTGSARHGSARAPQFRGGGRAFGPQVRSHAIDLPKKVRALALRHALSAKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
++V + + KTK + + + L+ DG + K +A +N+ ++VLP G
Sbjct: 121 GIVVLDKAALDDGKTKTLKTRFAAL-GLDNALIIDGAELEAKFSMAARNIPNIDVLPVQG 179
Query: 279 LNVYSILQHDTLVMSRDAVNKIVDR 303
+NVY IL+ LV++R A++ + R
Sbjct: 180 INVYDILRRTKLVLTRAALDALEAR 204
>gi|317131370|ref|YP_004090684.1| 50S ribosomal protein L4 [Ethanoligenens harbinense YUAN-3]
gi|315469349|gb|ADU25953.1| ribosomal protein L4/L1e [Ethanoligenens harbinense YUAN-3]
Length = 207
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 88/195 (45%), Positives = 119/195 (61%), Gaps = 1/195 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V N E G + LA VF + K +H VV LA ++QGT ST T SEVSG G+KPW
Sbjct: 6 VFNIAGEQVGEIELADSVFGIEPNKTALHTVVVNYLANQRQGTQSTLTRSEVSGGGRKPW 65
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQKGTG AR G+ R PQ++ G GPKPRS+ +NKKVRRL LK ALSA+ A G+L+V
Sbjct: 66 RQKGTGHARQGSTRAPQWKHGGIALGPKPRSYTYTVNKKVRRLALKSALSAKLAAGELVV 125
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
+ + +P KTK +V ++ E +KK L G ++E L + +N+ V + LNVY
Sbjct: 126 LDAISLPEIKTKQVVTILSKFETSKKALFVTAG-VNENLVKSARNIPGVKTASTGSLNVY 184
Query: 283 SILQHDTLVMSRDAV 297
+L + +S+DAV
Sbjct: 185 DLLDSNKFFISKDAV 199
>gi|110180282|gb|ABG54384.1| 23S ribosomal protein L4 [Brucella ceti]
gi|110180286|gb|ABG54386.1| 23S ribosomal protein L4 [Brucella ceti]
Length = 206
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 86/204 (42%), Positives = 123/204 (60%), Gaps = 1/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ +T +D G + L ++F + R DI+ RVVRWQLA+RQQG+H + +VS TG K
Sbjct: 3 LTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTGSK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGT RARH + R PQFRGG HGP R+H L KKV LGL+ ALSA+A L
Sbjct: 63 MYKQKGTDRARHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVLALGLRHALSAKAKASDL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
++ +DL KTK +V+ + ++ + LL G I + A N+ ++VLP G+N
Sbjct: 123 IIIDDLASADAKTKQLVSQFAKL-GLENALLIGGAEIDANFQRAASNIPNIDVLPVQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL+ LV+S+ AV + +R
Sbjct: 182 VYDILRRGKLVLSKAAVEALEERF 205
>gi|319407425|emb|CBI81076.1| 50S ribosomal protein L4 [Bartonella sp. 1-1C]
Length = 206
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 85/206 (41%), Positives = 130/206 (63%), Gaps = 3/206 (1%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
DL+I + ++ G + ++ ++F + R+DI+ RVVRWQLA+RQ+GTH ++ S+VS T
Sbjct: 2 DLIIKTLD--GKEAGKLKVSENIFGLTPREDILQRVVRWQLARRQKGTHQSQGRSDVSRT 59
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G K ++QKGTGRARH + R PQFRGG HGP RSHA L KK+R LGL++ALS +
Sbjct: 60 GAKMFKQKGTGRARHSSARAPQFRGGGKAHGPVIRSHAHNLPKKIRALGLRLALSVKLKT 119
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
L++ ++L + KTK + ++++ LL G + A N+ ++VLP
Sbjct: 120 DNLIIVDELSIRDAKTKVLNMNFSKL-GFNNALLIGGKEVDMNFFRAASNIPNIDVLPVQ 178
Query: 278 GLNVYSILQHDTLVMSRDAVNKIVDR 303
G+NVY IL+ LV+S++AV + +R
Sbjct: 179 GINVYDILRRSKLVLSKEAVETLEER 204
>gi|302344355|ref|YP_003808884.1| 50S ribosomal protein L4 [Desulfarculus baarsii DSM 2075]
gi|301640968|gb|ADK86290.1| ribosomal protein L4/L1e [Desulfarculus baarsii DSM 2075]
Length = 206
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 91/203 (44%), Positives = 125/203 (61%), Gaps = 5/203 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + ++E K G + LA +VF ++ ++H VV WQLAKR+ GT TKT SEV G
Sbjct: 1 MPKVDVYDEKKQKVGEIELADEVFAAEVKAHLLHEVVVWQLAKRRAGTACTKTRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G+ R P +RGG T HGPKPR + + KKVR+ LK ALS + AE
Sbjct: 61 GRKPWRQKGTGRARVGSRRSPLWRGGGTTHGPKPRDYDYNVPKKVRKAALKSALSDKLAE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
KL+V + + KTK + T+ VL+ G E L+ + +N+ V VL +
Sbjct: 121 EKLMVLRGFGLEAIKTKAFAEVLATFQ-TQNVLVVTAGP-DEVLEKSARNIPMVKVLRAE 178
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
GLNVY IL++D L++ AV +I
Sbjct: 179 GLNVYDILRYDRLMLLEPAVGRI 201
>gi|294675857|ref|YP_003576472.1| 50S ribosomal protein L4 [Rhodobacter capsulatus SB 1003]
gi|294474677|gb|ADE84065.1| 50S ribosomal protein L4 [Rhodobacter capsulatus SB 1003]
Length = 206
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 90/193 (46%), Positives = 121/193 (62%), Gaps = 1/193 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +F + R DI+HRVVRWQ AK Q GTHS S+VS + KK +RQKGTG AR
Sbjct: 14 GSIELDEALFGLEPRADILHRVVRWQRAKAQAGTHSVLGKSDVSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG+ + P FR G GP PRSHA L KK R LGL+ ALSA+A G L+V E ++
Sbjct: 74 HGSKKAPIFRHGGVYKGPTPRSHAHDLTKKFRALGLRHALSAKAKSGSLVVIEAADMAEA 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KT + ++ KKVL+ DG ++E LA +NL ++VLP++G NVY IL+ DTLV
Sbjct: 134 KTALLAKAAKEL-GWKKVLVIDGASVNENFALAARNLDGIDVLPTMGANVYDILKRDTLV 192
Query: 292 MSRDAVNKIVDRM 304
+++ V + R+
Sbjct: 193 ITKAGVEALEARL 205
>gi|408380611|ref|ZP_11178195.1| 50S ribosomal protein L4 [Agrobacterium albertimagni AOL15]
gi|407745824|gb|EKF57356.1| 50S ribosomal protein L4 [Agrobacterium albertimagni AOL15]
Length = 206
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 87/201 (43%), Positives = 123/201 (61%), Gaps = 1/201 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V +D G + L+ ++F + R+D+I R++R+QLAK++ GTH K SEVS TG K +
Sbjct: 5 VKTLEGKDAGKVSLSEEIFGLEPREDLIARMIRYQLAKKRAGTHKIKGRSEVSRTGSKMY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
+QKGTGRARH + R PQFRGG HGP RSHA L KKVR L L+ ALSA+ +++
Sbjct: 65 KQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPKKVRALALRHALSAKMKSEDVII 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
++L KTK +V + + T L+ G I KLA N+ ++VLP G+NVY
Sbjct: 125 VDNLVAAEAKTKLLVGSFASLGLT-NALVIGGAEIDSNFKLAASNIPNIDVLPVQGINVY 183
Query: 283 SILQHDTLVMSRDAVNKIVDR 303
IL+ LV+S+ AV + +R
Sbjct: 184 DILRRGKLVLSKAAVEALEER 204
>gi|383771136|ref|YP_005450201.1| 50S ribosomal protein L4 [Bradyrhizobium sp. S23321]
gi|381359259|dbj|BAL76089.1| 50S ribosomal protein L4 [Bradyrhizobium sp. S23321]
Length = 206
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 87/206 (42%), Positives = 128/206 (62%), Gaps = 1/206 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + VT ++ G + L+ +F + R+DII R V+WQL KRQ GTH K +E+ TG
Sbjct: 1 MELKVTTLEGKEAGSVQLSDAIFGLEPRQDIIARCVQWQLNKRQAGTHKAKGRAEIWRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP RSHA L KKVR L LK ALSA+A +G
Sbjct: 61 KKMYKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHATDLPKKVRALALKHALSAKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
LLV + + + KTK ++ +++ + T L+ DG ++ A +N+ ++VLP G
Sbjct: 121 DLLVIDKAALEAAKTKALLGHFSGLGLT-NALIIDGAELNNGFAAAARNIPNMDVLPIQG 179
Query: 279 LNVYSILQHDTLVMSRDAVNKIVDRM 304
+NVY IL+ LV+++ A++ + R
Sbjct: 180 INVYDILRRRKLVLTKAAIDALEARF 205
>gi|319408764|emb|CBI82421.1| 50S ribosomal protein L4 [Bartonella schoenbuchensis R1]
Length = 206
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 126/207 (60%), Gaps = 3/207 (1%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
DLVI + + G + ++ +F + R+DI+ RVVRWQLA+RQQGTH ++ S+V+ T
Sbjct: 2 DLVIKTLD--GNEAGKLKVSEHIFGLAPREDILQRVVRWQLARRQQGTHQSQGRSDVART 59
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G K ++QKGTGRARH + R PQFRGG HGP RSH L KK R LGL +ALS +
Sbjct: 60 GAKMFKQKGTGRARHSSARAPQFRGGGKAHGPVARSHVHILPKKSRALGLCLALSVKLKT 119
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
L+V ++L V KTK + ++++ LL G I+ A N+ ++VLP
Sbjct: 120 NDLIVVDELNVQDAKTKVLAKSFSKL-GFNNALLIGGKEINMNFSRAASNIPNIDVLPVQ 178
Query: 278 GLNVYSILQHDTLVMSRDAVNKIVDRM 304
G+NVY IL+ + LV+S+ AV + +R
Sbjct: 179 GINVYDILRRNKLVLSKAAVEALEERF 205
>gi|239825694|ref|YP_002948318.1| 50S ribosomal protein L4 [Geobacillus sp. WCH70]
gi|259491561|sp|C5D3R8.1|RL4_GEOSW RecName: Full=50S ribosomal protein L4
gi|239805987|gb|ACS23052.1| ribosomal protein L4/L1e [Geobacillus sp. WCH70]
Length = 207
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 126/200 (63%), Gaps = 1/200 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N E G + L VF + K ++ V Q A +QGTH TK +EVSG G+K
Sbjct: 4 VALYNQSGETIGEIELNDSVFGIEPNKHVLFEAVIMQRASLRQGTHKTKNRAEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+RGG T+ GP PRS++ KL KKVRRL +K ALS++ E +
Sbjct: 64 PWRQKGTGRARQGSIRAPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLENNI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V ++L + + KTK +V N + +K L+ ++E + L+ +N+ V V+ + G+N
Sbjct: 124 VVLDNLTLEAPKTKEMVKILNNLSVDRKALIVTDD-VNENVTLSARNIPGVTVVTANGIN 182
Query: 281 VYSILQHDTLVMSRDAVNKI 300
V +L HD LV+++ AV K+
Sbjct: 183 VLDVLNHDKLVITKAAVEKV 202
>gi|347529948|ref|YP_004836696.1| 50S ribosomal protein L4 [Sphingobium sp. SYK-6]
gi|345138630|dbj|BAK68239.1| 50S ribosomal protein L4 [Sphingobium sp. SYK-6]
Length = 208
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 88/186 (47%), Positives = 117/186 (62%), Gaps = 1/186 (0%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
VF V R DI+HRVV WQL KR+ +T+ S+V+ TGKK RQKG G ARHG R P
Sbjct: 23 VFGVEPRADILHRVVTWQLEKRRAPAAATRERSDVARTGKKFGRQKGGGTARHGDRRAPI 82
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
F GG HG + R+ LNKKVR LGLK+ALSA+A G L V ++L+V KT+ + +
Sbjct: 83 FIGGGKAHGQRARTFGHSLNKKVRALGLKMALSAKAKGGSLTVLDNLDVKDGKTRELAGH 142
Query: 240 YNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNK 299
++ N K L DG I+ A+ NL VNVLP++G NVY IL+ D+LV++R AV +
Sbjct: 143 LAKL-NLGKTLFIDGEAINVSFAKASSNLVGVNVLPAIGANVYDILRADSLVLTRAAVEQ 201
Query: 300 IVDRMH 305
+ R +
Sbjct: 202 LEARFN 207
>gi|304391454|ref|ZP_07373396.1| ribosomal protein, L4/L1 family [Ahrensia sp. R2A130]
gi|303295683|gb|EFL90041.1| ribosomal protein, L4/L1 family [Ahrensia sp. R2A130]
Length = 206
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 86/205 (41%), Positives = 125/205 (60%), Gaps = 1/205 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + VT G + L+ VF + R+DII R+VR+QLAK +QGTH + S+V TG
Sbjct: 1 MELDVTKMDGSKSGKVSLSDTVFGLEPRQDIIQRMVRYQLAKARQGTHQVQGRSDVDRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
K+ +RQKGTG ARH + PQFRGG HGP+ R H+ L KK R L L+ ALSA+A G
Sbjct: 61 KRMYRQKGTGGARHHSQAAPQFRGGGKAHGPQSRDHSHDLTKKFRALALRHALSAKAQAG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
L+V +DL KT + ++ + L+ G + KLA QN+ +++VLP G
Sbjct: 121 TLVVVDDLAAKDPKTAALRGNLGKL-GFENALMIGGSELDNNFKLAAQNIPHIDVLPVQG 179
Query: 279 LNVYSILQHDTLVMSRDAVNKIVDR 303
+NVY I++ +TLV+S+ AV+ + +R
Sbjct: 180 INVYDIIRRNTLVLSKAAVDALEER 204
>gi|30018381|ref|NP_830012.1| 50S ribosomal protein L4 [Bacillus cereus ATCC 14579]
gi|30260302|ref|NP_842679.1| 50S ribosomal protein L4 [Bacillus anthracis str. Ames]
gi|42779192|ref|NP_976439.1| 50S ribosomal protein L4 [Bacillus cereus ATCC 10987]
gi|47525367|ref|YP_016716.1| 50S ribosomal protein L4 [Bacillus anthracis str. 'Ames Ancestor']
gi|49183145|ref|YP_026397.1| 50S ribosomal protein L4 [Bacillus anthracis str. Sterne]
gi|49476718|ref|YP_034463.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|52145106|ref|YP_081722.1| 50S ribosomal protein L4 [Bacillus cereus E33L]
gi|118475880|ref|YP_893031.1| 50S ribosomal protein L4 [Bacillus thuringiensis str. Al Hakam]
gi|206972278|ref|ZP_03233225.1| 50S ribosomal protein L4 [Bacillus cereus AH1134]
gi|217957686|ref|YP_002336230.1| 50S ribosomal protein L4 [Bacillus cereus AH187]
gi|218234634|ref|YP_002364960.1| 50S ribosomal protein L4 [Bacillus cereus B4264]
gi|218895246|ref|YP_002443657.1| 50S ribosomal protein L4 [Bacillus cereus G9842]
gi|218901315|ref|YP_002449149.1| 50S ribosomal protein L4 [Bacillus cereus AH820]
gi|222093881|ref|YP_002527931.1| 50S ribosomal protein L4 [Bacillus cereus Q1]
gi|225862163|ref|YP_002747541.1| 50S ribosomal protein L4 [Bacillus cereus 03BB102]
gi|227812784|ref|YP_002812793.1| 50S ribosomal protein L4 [Bacillus anthracis str. CDC 684]
gi|228898864|ref|ZP_04063146.1| 50S ribosomal protein L4 [Bacillus thuringiensis IBL 4222]
gi|228905908|ref|ZP_04069805.1| 50S ribosomal protein L4 [Bacillus thuringiensis IBL 200]
gi|228912850|ref|ZP_04076497.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|228919061|ref|ZP_04082440.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228925364|ref|ZP_04088460.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228931613|ref|ZP_04094519.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228937414|ref|ZP_04100060.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|228943917|ref|ZP_04106302.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|228950659|ref|ZP_04112793.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|228956552|ref|ZP_04118348.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar pakistani
str. T13001]
gi|228963211|ref|ZP_04124380.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar sotto str.
T04001]
gi|228970300|ref|ZP_04130959.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228976870|ref|ZP_04137282.1| 50S ribosomal protein L4 [Bacillus thuringiensis Bt407]
gi|228983366|ref|ZP_04143579.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229027959|ref|ZP_04184112.1| 50S ribosomal protein L4 [Bacillus cereus AH1271]
gi|229041016|ref|ZP_04189779.1| 50S ribosomal protein L4 [Bacillus cereus AH676]
gi|229067876|ref|ZP_04201193.1| 50S ribosomal protein L4 [Bacillus cereus F65185]
gi|229074172|ref|ZP_04207218.1| 50S ribosomal protein L4 [Bacillus cereus Rock4-18]
gi|229089242|ref|ZP_04220523.1| 50S ribosomal protein L4 [Bacillus cereus Rock3-42]
gi|229094833|ref|ZP_04225838.1| 50S ribosomal protein L4 [Bacillus cereus Rock3-29]
gi|229100910|ref|ZP_04231714.1| 50S ribosomal protein L4 [Bacillus cereus Rock3-28]
gi|229107797|ref|ZP_04237433.1| 50S ribosomal protein L4 [Bacillus cereus Rock1-15]
gi|229113787|ref|ZP_04243222.1| 50S ribosomal protein L4 [Bacillus cereus Rock1-3]
gi|229119773|ref|ZP_04249034.1| 50S ribosomal protein L4 [Bacillus cereus 95/8201]
gi|229125628|ref|ZP_04254660.1| 50S ribosomal protein L4 [Bacillus cereus BDRD-Cer4]
gi|229136957|ref|ZP_04265584.1| 50S ribosomal protein L4 [Bacillus cereus BDRD-ST26]
gi|229142917|ref|ZP_04271358.1| 50S ribosomal protein L4 [Bacillus cereus BDRD-ST24]
gi|229148520|ref|ZP_04276776.1| 50S ribosomal protein L4 [Bacillus cereus m1550]
gi|229153889|ref|ZP_04282019.1| 50S ribosomal protein L4 [Bacillus cereus ATCC 4342]
gi|229159284|ref|ZP_04287308.1| 50S ribosomal protein L4 [Bacillus cereus R309803]
gi|229170962|ref|ZP_04298563.1| 50S ribosomal protein L4 [Bacillus cereus MM3]
gi|229176711|ref|ZP_04304115.1| 50S ribosomal protein L4 [Bacillus cereus 172560W]
gi|229182505|ref|ZP_04309756.1| 50S ribosomal protein L4 [Bacillus cereus BGSC 6E1]
gi|229188396|ref|ZP_04315444.1| 50S ribosomal protein L4 [Bacillus cereus ATCC 10876]
gi|229194501|ref|ZP_04321304.1| 50S ribosomal protein L4 [Bacillus cereus m1293]
gi|229602888|ref|YP_002864762.1| 50S ribosomal protein L4 [Bacillus anthracis str. A0248]
gi|254684385|ref|ZP_05148245.1| 50S ribosomal protein L4 [Bacillus anthracis str. CNEVA-9066]
gi|254720833|ref|ZP_05182625.1| 50S ribosomal protein L4 [Bacillus anthracis str. A1055]
gi|254733588|ref|ZP_05191308.1| 50S ribosomal protein L4 [Bacillus anthracis str. Western North
America USA6153]
gi|254739508|ref|ZP_05197205.1| 50S ribosomal protein L4 [Bacillus anthracis str. Kruger B]
gi|254751227|ref|ZP_05203265.1| 50S ribosomal protein L4 [Bacillus anthracis str. Vollum]
gi|254756766|ref|ZP_05208795.1| 50S ribosomal protein L4 [Bacillus anthracis str. Australia 94]
gi|296500945|ref|YP_003662645.1| 50S ribosomal protein L4 [Bacillus thuringiensis BMB171]
gi|300119577|ref|ZP_07057121.1| 50S ribosomal protein L4 [Bacillus cereus SJ1]
gi|301051848|ref|YP_003790059.1| 50S ribosomal protein L4 [Bacillus cereus biovar anthracis str. CI]
gi|365164085|ref|ZP_09360171.1| 50S ribosomal protein L4 [Bacillus sp. 7_6_55CFAA_CT2]
gi|375282209|ref|YP_005102644.1| 50S ribosomal protein L4 [Bacillus cereus NC7401]
gi|376264140|ref|YP_005116852.1| 50S ribosomal protein L4 [Bacillus cereus F837/76]
gi|384178018|ref|YP_005563780.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|384184197|ref|YP_005570093.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar chinensis
CT-43]
gi|386733977|ref|YP_006207158.1| 50S ribosomal protein L4 [Bacillus anthracis str. H9401]
gi|402554301|ref|YP_006595572.1| 50S ribosomal protein L4 [Bacillus cereus FRI-35]
gi|402562796|ref|YP_006605520.1| 50S ribosomal protein L4 [Bacillus thuringiensis HD-771]
gi|407708059|ref|YP_006831644.1| glycosyltransferase [Bacillus thuringiensis MC28]
gi|410672482|ref|YP_006924853.1| 50S ribosomal protein L4 [Bacillus thuringiensis Bt407]
gi|421510439|ref|ZP_15957332.1| 50S ribosomal protein L4 [Bacillus anthracis str. UR-1]
gi|421640527|ref|ZP_16081109.1| 50S ribosomal protein L4 [Bacillus anthracis str. BF1]
gi|423357598|ref|ZP_17335193.1| 50S ribosomal protein L4 [Bacillus cereus IS075]
gi|423364465|ref|ZP_17341955.1| 50S ribosomal protein L4 [Bacillus cereus VD022]
gi|423376297|ref|ZP_17353611.1| 50S ribosomal protein L4 [Bacillus cereus AND1407]
gi|423381842|ref|ZP_17359125.1| 50S ribosomal protein L4 [Bacillus cereus BAG1O-2]
gi|423387403|ref|ZP_17364657.1| 50S ribosomal protein L4 [Bacillus cereus BAG1X1-2]
gi|423405165|ref|ZP_17382338.1| 50S ribosomal protein L4 [Bacillus cereus BAG2X1-2]
gi|423415989|ref|ZP_17393109.1| 50S ribosomal protein L4 [Bacillus cereus BAG3O-2]
gi|423422344|ref|ZP_17399375.1| 50S ribosomal protein L4 [Bacillus cereus BAG3X2-2]
gi|423428217|ref|ZP_17405221.1| 50S ribosomal protein L4 [Bacillus cereus BAG4O-1]
gi|423439434|ref|ZP_17416372.1| 50S ribosomal protein L4 [Bacillus cereus BAG4X12-1]
gi|423439711|ref|ZP_17416617.1| 50S ribosomal protein L4 [Bacillus cereus BAG4X2-1]
gi|423450132|ref|ZP_17427010.1| 50S ribosomal protein L4 [Bacillus cereus BAG5O-1]
gi|423462615|ref|ZP_17439409.1| 50S ribosomal protein L4 [Bacillus cereus BAG5X2-1]
gi|423467968|ref|ZP_17444736.1| 50S ribosomal protein L4 [Bacillus cereus BAG6O-1]
gi|423480008|ref|ZP_17456722.1| 50S ribosomal protein L4 [Bacillus cereus BAG6X1-1]
gi|423507863|ref|ZP_17484430.1| 50S ribosomal protein L4 [Bacillus cereus HD73]
gi|423526591|ref|ZP_17503036.1| 50S ribosomal protein L4 [Bacillus cereus HuB1-1]
gi|423537368|ref|ZP_17513786.1| 50S ribosomal protein L4 [Bacillus cereus HuB2-9]
gi|423543096|ref|ZP_17519484.1| 50S ribosomal protein L4 [Bacillus cereus HuB4-10]
gi|423543598|ref|ZP_17519956.1| 50S ribosomal protein L4 [Bacillus cereus HuB5-5]
gi|423553955|ref|ZP_17530282.1| 50S ribosomal protein L4 [Bacillus cereus ISP3191]
gi|423565531|ref|ZP_17541807.1| 50S ribosomal protein L4 [Bacillus cereus MSX-A1]
gi|423572102|ref|ZP_17548316.1| 50S ribosomal protein L4 [Bacillus cereus MSX-A12]
gi|423578037|ref|ZP_17554156.1| 50S ribosomal protein L4 [Bacillus cereus MSX-D12]
gi|423578518|ref|ZP_17554629.1| 50S ribosomal protein L4 [Bacillus cereus VD014]
gi|423590602|ref|ZP_17566664.1| 50S ribosomal protein L4 [Bacillus cereus VD045]
gi|423608064|ref|ZP_17583957.1| 50S ribosomal protein L4 [Bacillus cereus VD102]
gi|423620281|ref|ZP_17596112.1| 50S ribosomal protein L4 [Bacillus cereus VD115]
gi|423626947|ref|ZP_17602722.1| 50S ribosomal protein L4 [Bacillus cereus VD148]
gi|423632020|ref|ZP_17607766.1| 50S ribosomal protein L4 [Bacillus cereus VD154]
gi|423638114|ref|ZP_17613766.1| 50S ribosomal protein L4 [Bacillus cereus VD156]
gi|423645070|ref|ZP_17620686.1| 50S ribosomal protein L4 [Bacillus cereus VD166]
gi|423646246|ref|ZP_17621816.1| 50S ribosomal protein L4 [Bacillus cereus VD169]
gi|423653045|ref|ZP_17628344.1| 50S ribosomal protein L4 [Bacillus cereus VD200]
gi|434378756|ref|YP_006613400.1| 50S ribosomal protein L4 [Bacillus thuringiensis HD-789]
gi|449086778|ref|YP_007419219.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar kurstaki
str. HD73]
gi|452196489|ref|YP_007476570.1| LSU ribosomal protein L4p (L1e) [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|46576767|sp|Q81J41.1|RL4_BACCR RecName: Full=50S ribosomal protein L4
gi|46576769|sp|Q81VS9.1|RL4_BACAN RecName: Full=50S ribosomal protein L4
gi|81570005|sp|Q73F95.1|RL4_BACC1 RecName: Full=50S ribosomal protein L4
gi|81614034|sp|Q6HPQ7.1|RL4_BACHK RecName: Full=50S ribosomal protein L4
gi|81689839|sp|Q63H89.1|RL4_BACCZ RecName: Full=50S ribosomal protein L4
gi|166234634|sp|A0R8I1.1|RL4_BACAH RecName: Full=50S ribosomal protein L4
gi|226730615|sp|B7JKC0.1|RL4_BACC0 RecName: Full=50S ribosomal protein L4
gi|226730616|sp|B7IT20.1|RL4_BACC2 RecName: Full=50S ribosomal protein L4
gi|226730617|sp|B7HJ49.1|RL4_BACC4 RecName: Full=50S ribosomal protein L4
gi|226730618|sp|B7HQU5.1|RL4_BACC7 RecName: Full=50S ribosomal protein L4
gi|254803712|sp|C3P9Q6.1|RL4_BACAA RecName: Full=50S ribosomal protein L4
gi|254803713|sp|C3LJ83.1|RL4_BACAC RecName: Full=50S ribosomal protein L4
gi|254803714|sp|C1ET40.1|RL4_BACC3 RecName: Full=50S ribosomal protein L4
gi|254803715|sp|B9IZJ5.1|RL4_BACCQ RecName: Full=50S ribosomal protein L4
gi|29893921|gb|AAP07213.1| LSU ribosomal protein L1E/L4P [Bacillus cereus ATCC 14579]
gi|30253623|gb|AAP24165.1| 50S ribosomal protein L4 [Bacillus anthracis str. Ames]
gi|42735107|gb|AAS39047.1| ribosomal protein L4 [Bacillus cereus ATCC 10987]
gi|47500515|gb|AAT29191.1| ribosomal protein L4 [Bacillus anthracis str. 'Ames Ancestor']
gi|49177072|gb|AAT52448.1| ribosomal protein L4 [Bacillus anthracis str. Sterne]
gi|49328274|gb|AAT58920.1| ribosomal protein L4 (50S ribosomal protein L4) [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|51978575|gb|AAU20125.1| ribosomal protein L4 (50S ribosomal protein L4) [Bacillus cereus
E33L]
gi|118415105|gb|ABK83524.1| LSU ribosomal protein L4P [Bacillus thuringiensis str. Al Hakam]
gi|206732852|gb|EDZ50027.1| 50S ribosomal protein L4 [Bacillus cereus AH1134]
gi|217062939|gb|ACJ77189.1| ribosomal protein L4 [Bacillus cereus AH187]
gi|218162591|gb|ACK62583.1| ribosomal protein L4 [Bacillus cereus B4264]
gi|218538801|gb|ACK91199.1| ribosomal protein L4 [Bacillus cereus AH820]
gi|218543914|gb|ACK96308.1| ribosomal protein L4 [Bacillus cereus G9842]
gi|221237929|gb|ACM10639.1| ribosomal protein L4 (50S ribosomal protein L4) [Bacillus cereus
Q1]
gi|225787946|gb|ACO28163.1| 50S ribosomal protein L4 [Bacillus cereus 03BB102]
gi|227006772|gb|ACP16515.1| 50S ribosomal protein L4 [Bacillus anthracis str. CDC 684]
gi|228588967|gb|EEK46982.1| 50S ribosomal protein L4 [Bacillus cereus m1293]
gi|228595070|gb|EEK52841.1| 50S ribosomal protein L4 [Bacillus cereus ATCC 10876]
gi|228600960|gb|EEK58529.1| 50S ribosomal protein L4 [Bacillus cereus BGSC 6E1]
gi|228606754|gb|EEK64171.1| 50S ribosomal protein L4 [Bacillus cereus 172560W]
gi|228612502|gb|EEK69723.1| 50S ribosomal protein L4 [Bacillus cereus MM3]
gi|228624176|gb|EEK80978.1| 50S ribosomal protein L4 [Bacillus cereus R309803]
gi|228629570|gb|EEK86267.1| 50S ribosomal protein L4 [Bacillus cereus ATCC 4342]
gi|228634936|gb|EEK91509.1| 50S ribosomal protein L4 [Bacillus cereus m1550]
gi|228640538|gb|EEK96927.1| 50S ribosomal protein L4 [Bacillus cereus BDRD-ST24]
gi|228646495|gb|EEL02702.1| 50S ribosomal protein L4 [Bacillus cereus BDRD-ST26]
gi|228657820|gb|EEL13626.1| 50S ribosomal protein L4 [Bacillus cereus BDRD-Cer4]
gi|228663674|gb|EEL19253.1| 50S ribosomal protein L4 [Bacillus cereus 95/8201]
gi|228669658|gb|EEL25065.1| 50S ribosomal protein L4 [Bacillus cereus Rock1-3]
gi|228675646|gb|EEL30854.1| 50S ribosomal protein L4 [Bacillus cereus Rock1-15]
gi|228682489|gb|EEL36562.1| 50S ribosomal protein L4 [Bacillus cereus Rock3-28]
gi|228688576|gb|EEL42449.1| 50S ribosomal protein L4 [Bacillus cereus Rock3-29]
gi|228694081|gb|EEL47763.1| 50S ribosomal protein L4 [Bacillus cereus Rock3-42]
gi|228708942|gb|EEL61069.1| 50S ribosomal protein L4 [Bacillus cereus Rock4-18]
gi|228715235|gb|EEL67094.1| 50S ribosomal protein L4 [Bacillus cereus F65185]
gi|228727313|gb|EEL78507.1| 50S ribosomal protein L4 [Bacillus cereus AH676]
gi|228733347|gb|EEL84176.1| 50S ribosomal protein L4 [Bacillus cereus AH1271]
gi|228776356|gb|EEM24709.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228782840|gb|EEM31006.1| 50S ribosomal protein L4 [Bacillus thuringiensis Bt407]
gi|228789409|gb|EEM37329.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228796469|gb|EEM43908.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar sotto str.
T04001]
gi|228803117|gb|EEM49939.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar pakistani
str. T13001]
gi|228809010|gb|EEM55495.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|228815750|gb|EEM61986.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|228822247|gb|EEM68229.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|228828041|gb|EEM73769.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228834286|gb|EEM79827.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228840586|gb|EEM85848.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228846786|gb|EEM91791.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|228853723|gb|EEM98483.1| 50S ribosomal protein L4 [Bacillus thuringiensis IBL 200]
gi|228860764|gb|EEN05142.1| 50S ribosomal protein L4 [Bacillus thuringiensis IBL 4222]
gi|229267296|gb|ACQ48933.1| 50S ribosomal protein L4 [Bacillus anthracis str. A0248]
gi|296321997|gb|ADH04925.1| 50S ribosomal protein L4 [Bacillus thuringiensis BMB171]
gi|298723049|gb|EFI63947.1| 50S ribosomal protein L4 [Bacillus cereus SJ1]
gi|300374017|gb|ADK02921.1| 50S ribosomal protein L4 [Bacillus cereus biovar anthracis str. CI]
gi|324324102|gb|ADY19362.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|326937906|gb|AEA13802.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar chinensis
CT-43]
gi|358350732|dbj|BAL15904.1| ribosomal protein L4 [Bacillus cereus NC7401]
gi|363613386|gb|EHL64903.1| 50S ribosomal protein L4 [Bacillus sp. 7_6_55CFAA_CT2]
gi|364509940|gb|AEW53339.1| LSU ribosomal protein L4p (L1e) [Bacillus cereus F837/76]
gi|384383829|gb|AFH81490.1| 50S ribosomal protein L4 [Bacillus anthracis str. H9401]
gi|401072884|gb|EJP81338.1| 50S ribosomal protein L4 [Bacillus cereus VD022]
gi|401074464|gb|EJP82864.1| 50S ribosomal protein L4 [Bacillus cereus IS075]
gi|401088754|gb|EJP96936.1| 50S ribosomal protein L4 [Bacillus cereus AND1407]
gi|401094436|gb|EJQ02517.1| 50S ribosomal protein L4 [Bacillus cereus BAG3O-2]
gi|401112788|gb|EJQ20662.1| 50S ribosomal protein L4 [Bacillus cereus BAG4X12-1]
gi|401120061|gb|EJQ27862.1| 50S ribosomal protein L4 [Bacillus cereus BAG3X2-2]
gi|401126755|gb|EJQ34489.1| 50S ribosomal protein L4 [Bacillus cereus BAG5O-1]
gi|401127139|gb|EJQ34868.1| 50S ribosomal protein L4 [Bacillus cereus BAG4O-1]
gi|401130794|gb|EJQ38450.1| 50S ribosomal protein L4 [Bacillus cereus BAG5X2-1]
gi|401166796|gb|EJQ74096.1| 50S ribosomal protein L4 [Bacillus cereus HuB4-10]
gi|401182162|gb|EJQ89301.1| 50S ribosomal protein L4 [Bacillus cereus ISP3191]
gi|401187763|gb|EJQ94835.1| 50S ribosomal protein L4 [Bacillus cereus HuB5-5]
gi|401193733|gb|EJR00736.1| 50S ribosomal protein L4 [Bacillus cereus MSX-A1]
gi|401198824|gb|EJR05737.1| 50S ribosomal protein L4 [Bacillus cereus MSX-A12]
gi|401203617|gb|EJR10453.1| 50S ribosomal protein L4 [Bacillus cereus MSX-D12]
gi|401220239|gb|EJR26881.1| 50S ribosomal protein L4 [Bacillus cereus VD045]
gi|401221243|gb|EJR27867.1| 50S ribosomal protein L4 [Bacillus cereus VD014]
gi|401238747|gb|EJR45180.1| 50S ribosomal protein L4 [Bacillus cereus VD102]
gi|401248841|gb|EJR55162.1| 50S ribosomal protein L4 [Bacillus cereus VD115]
gi|401250142|gb|EJR56446.1| 50S ribosomal protein L4 [Bacillus cereus VD148]
gi|401262739|gb|EJR68877.1| 50S ribosomal protein L4 [Bacillus cereus VD154]
gi|401267765|gb|EJR73821.1| 50S ribosomal protein L4 [Bacillus cereus VD166]
gi|401271838|gb|EJR77841.1| 50S ribosomal protein L4 [Bacillus cereus VD156]
gi|401287875|gb|EJR93642.1| 50S ribosomal protein L4 [Bacillus cereus VD169]
gi|401303153|gb|EJS08716.1| 50S ribosomal protein L4 [Bacillus cereus VD200]
gi|401628468|gb|EJS46309.1| 50S ribosomal protein L4 [Bacillus cereus BAG1O-2]
gi|401628986|gb|EJS46814.1| 50S ribosomal protein L4 [Bacillus cereus BAG1X1-2]
gi|401645535|gb|EJS63190.1| 50S ribosomal protein L4 [Bacillus cereus BAG2X1-2]
gi|401791448|gb|AFQ17487.1| 50S ribosomal protein L4 [Bacillus thuringiensis HD-771]
gi|401795511|gb|AFQ09370.1| 50S ribosomal protein L4 [Bacillus cereus FRI-35]
gi|401819521|gb|EJT18698.1| 50S ribosomal protein L4 [Bacillus anthracis str. UR-1]
gi|401877313|gb|AFQ29480.1| 50S ribosomal protein L4 [Bacillus thuringiensis HD-789]
gi|402411835|gb|EJV44198.1| 50S ribosomal protein L4 [Bacillus cereus BAG6O-1]
gi|402421892|gb|EJV54136.1| 50S ribosomal protein L4 [Bacillus cereus BAG4X2-1]
gi|402423992|gb|EJV56188.1| 50S ribosomal protein L4 [Bacillus cereus BAG6X1-1]
gi|402442650|gb|EJV74571.1| 50S ribosomal protein L4 [Bacillus cereus HD73]
gi|402455631|gb|EJV87412.1| 50S ribosomal protein L4 [Bacillus cereus HuB1-1]
gi|402459074|gb|EJV90812.1| 50S ribosomal protein L4 [Bacillus cereus HuB2-9]
gi|403392343|gb|EJY89597.1| 50S ribosomal protein L4 [Bacillus anthracis str. BF1]
gi|407385744|gb|AFU16245.1| 50S ribosomal protein L4 [Bacillus thuringiensis MC28]
gi|409171611|gb|AFV15916.1| 50S ribosomal protein L4 [Bacillus thuringiensis Bt407]
gi|449020535|gb|AGE75698.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar kurstaki
str. HD73]
gi|452101882|gb|AGF98821.1| LSU ribosomal protein L4p (L1e) [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 207
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 123/200 (61%), Gaps = 1/200 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + LA +F + + ++ V Q A +QGTH KT SEV G G+K
Sbjct: 4 VTVYNQTGSQVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+RGG T+ GP PRS+A KL KKVRRL +K AL+ + E +
Sbjct: 64 PWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVENNI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V EDL + + KTK ++ + KK L+ +E ++L+ +N+ V V+ + G+N
Sbjct: 124 VVLEDLVLNAPKTKDMLAVLKGLTVEKKALIVTADA-NESVELSARNIPGVTVITADGVN 182
Query: 281 VYSILQHDTLVMSRDAVNKI 300
V +L HD L+M++ AV K+
Sbjct: 183 VLDVLHHDKLIMTKAAVEKV 202
>gi|167629468|ref|YP_001679967.1| 50S ribosomal protein L4 [Heliobacterium modesticaldum Ice1]
gi|226730671|sp|B0TC57.1|RL4_HELMI RecName: Full=50S ribosomal protein L4
gi|167592208|gb|ABZ83956.1| 50S ribosomal protein l4 [Heliobacterium modesticaldum Ice1]
Length = 207
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 87/203 (42%), Positives = 127/203 (62%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N + G + L +F + + ++H+ V QLA ++GTH K+ EVSG
Sbjct: 1 MPKVALYNTEGAQVGEIELNDAIFGIEPNEAVMHQAVVTQLAAWRRGTHKVKSRGEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
GKKPWRQKGTGRAR GT R P +RGG + GP+PRS+ I + KKVRRL LK ALS +
Sbjct: 61 GKKPWRQKGTGRARAGTSRSPLWRGGAIIFGPQPRSYKIAMPKKVRRLALKSALSDKVRS 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
G L+V + LE+ + KTK I N+++ +K LL I E + + +N+ V+ + +V
Sbjct: 121 GNLIVVDALEMDAPKTKVIAGILNKLKVERKALLVTAD-IDETVFKSARNIPGVSPVEAV 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
G+NVY IL HD LV++++AV K+
Sbjct: 180 GINVYDILNHDKLVITKNAVAKV 202
>gi|89070556|ref|ZP_01157845.1| 50S ribosomal protein L4 [Oceanicola granulosus HTCC2516]
gi|89043863|gb|EAR50061.1| 50S ribosomal protein L4 [Oceanicola granulosus HTCC2516]
Length = 206
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 117/193 (60%), Gaps = 1/193 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++F + R DI+HRVVRWQ QQGTH KT E S + KK +RQKGTG AR
Sbjct: 14 GSVELDEELFGLEPRTDILHRVVRWQRNNAQQGTHKVKTRRETSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG P FR G GP PRSH +L KK R+LGL+ ALSA+ G+L+V + +E+
Sbjct: 74 HGDRNAPIFRKGGVYKGPTPRSHGHELTKKFRKLGLRHALSAKQKAGELVVIDTIEIAEA 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KT + + K+ L+ DG ++E A +NL ++VLPS+G NVY IL+ DTLV
Sbjct: 134 KTSQLAKQVKNL-GWKRALVIDGAAVNEDFAKAARNLANLDVLPSMGANVYDILKSDTLV 192
Query: 292 MSRDAVNKIVDRM 304
+++ V + R+
Sbjct: 193 LTKAGVEALEARL 205
>gi|259416401|ref|ZP_05740321.1| ribosomal protein, L4/L1 family [Silicibacter sp. TrichCH4B]
gi|259347840|gb|EEW59617.1| ribosomal protein, L4/L1 family [Silicibacter sp. TrichCH4B]
Length = 205
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 86/193 (44%), Positives = 118/193 (61%), Gaps = 2/193 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ D+F + R DI+HR+VRWQ Q GTH KT SE S + KK +RQKGTG AR
Sbjct: 14 GDIELSEDLFGLEPRADILHRMVRWQRNNAQAGTHKVKTRSETSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG P FR G GP PRSH L KK R+LGL+ ALSA+A G+L+V E+ E
Sbjct: 74 HGDRNAPIFRKGGIYKGPTPRSHGHDLTKKFRKLGLRHALSAKAKAGELVVIENAEAEG- 132
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KT + + K+ L+ DG ++E A +N+ +++LPS+G NVY IL+ DTLV
Sbjct: 133 KTAALAKQVANL-GWKRALVIDGAAVNEGFARAAKNIEGLDILPSMGANVYDILKRDTLV 191
Query: 292 MSRDAVNKIVDRM 304
+++ AV + R+
Sbjct: 192 LTKSAVEALEARL 204
>gi|46579715|ref|YP_010523.1| 50S ribosomal protein L4 [Desulfovibrio vulgaris str.
Hildenborough]
gi|120602808|ref|YP_967208.1| 50S ribosomal protein L4 [Desulfovibrio vulgaris DP4]
gi|387153062|ref|YP_005701998.1| 50S ribosomal protein L4 [Desulfovibrio vulgaris RCH1]
gi|81566853|sp|Q72CH9.1|RL4_DESVH RecName: Full=50S ribosomal protein L4
gi|166234662|sp|A1VEB5.1|RL4_DESVV RecName: Full=50S ribosomal protein L4
gi|46449130|gb|AAS95782.1| ribosomal protein L4 [Desulfovibrio vulgaris str. Hildenborough]
gi|120563037|gb|ABM28781.1| LSU ribosomal protein L4P [Desulfovibrio vulgaris DP4]
gi|311233506|gb|ADP86360.1| ribosomal protein L4/L1e [Desulfovibrio vulgaris RCH1]
Length = 206
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 85/205 (41%), Positives = 127/205 (61%), Gaps = 2/205 (0%)
Query: 100 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
V+ V + ++ G + LA +VF+V +R +I+H VVR Q A + GTH+TKT + VSG G
Sbjct: 3 VVKVYDQNKQEAGEITLAPEVFEVEVRPEILHLVVRAQRAAFRAGTHATKTRAFVSGGGL 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
KPWRQKGTGRAR G++R P +RGG + GP+PR + K+NKKVR+L L++ALS+R A
Sbjct: 63 KPWRQKGTGRARAGSIRSPLWRGGAIIFGPQPRDYEFKVNKKVRKLALRMALSSRLAGSN 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGL 279
LLV + E+P KTK + + K +++ + L L+ +N+ + + L
Sbjct: 123 LLVVKGFELPEVKTKLFAKIADTLGLDKALIIAPEE--NTTLALSVRNIPGITIATPEQL 180
Query: 280 NVYSILQHDTLVMSRDAVNKIVDRM 304
+VY IL+H LV+ AV + DR+
Sbjct: 181 SVYEILKHKQLVLVEGAVASVQDRL 205
>gi|296131837|ref|YP_003639084.1| 50S ribosomal protein L4 [Thermincola potens JR]
gi|296030415|gb|ADG81183.1| ribosomal protein L4/L1e [Thermincola potens JR]
Length = 206
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 126/200 (63%), Gaps = 2/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N E G + L +VF + + ++H VV QLA R+ GT STKT +EVSG G+K
Sbjct: 4 VALYNIKGEQVGEIELKDEVFGIEPNEGLVHDVVVMQLANRRVGTASTKTRAEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRARHG++R P +RGG GPKPRS + KK RRL LK LS++ ++G +
Sbjct: 64 PWRQKGTGRARHGSIRSPIWRGGGITFGPKPRSFNYTMPKKARRLALKSVLSSKVSDGNI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + LE+ KTK + N+++ K V++ + + + + +N+ V L + GLN
Sbjct: 124 IVLDTLEMAQPKTKEMAEILNRLKAKKAVVVT--ADVDQNVIKSARNIPGVTPLTASGLN 181
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY ++ H+ LV+++DAV K+
Sbjct: 182 VYDLVNHEKLVITKDAVAKV 201
>gi|170738702|ref|YP_001767357.1| 50S ribosomal protein L4 [Methylobacterium sp. 4-46]
gi|226730694|sp|B0UHW8.1|RL4_METS4 RecName: Full=50S ribosomal protein L4
gi|168192976|gb|ACA14923.1| ribosomal protein L4/L1e [Methylobacterium sp. 4-46]
Length = 206
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 87/202 (43%), Positives = 119/202 (58%), Gaps = 1/202 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+T + G + + +F + R D++ R VRWQLAKRQ GTH KT SE+S T KK +
Sbjct: 5 ITTLDGGEAGSVEVNEAIFGLEPRADLLQRCVRWQLAKRQAGTHKVKTRSEISRTTKKMY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
+QKGTG ARHG PQFRGG GP RSHA L KKVR L L+ ALSA+A L+V
Sbjct: 65 KQKGTGNARHGAASAPQFRGGARAFGPVVRSHAHDLPKKVRALALRHALSAKARAASLVV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
+D+ + KTK + + + + L+ G + E A +NL ++VLP G+NVY
Sbjct: 125 VDDVRLEDGKTKALKDRFGAL-GWSNALIIGGAEVDENFGRAARNLPSIDVLPVQGINVY 183
Query: 283 SILQHDTLVMSRDAVNKIVDRM 304
IL+ D LV++R AV+ + R
Sbjct: 184 DILRRDKLVLTRAAVDALEARF 205
>gi|56961933|ref|YP_173655.1| 50S ribosomal protein L4 [Bacillus clausii KSM-K16]
gi|81601105|sp|Q5WLR1.1|RL4_BACSK RecName: Full=50S ribosomal protein L4
gi|56908167|dbj|BAD62694.1| 50S ribosomal protein L4 [Bacillus clausii KSM-K16]
Length = 207
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 85/203 (41%), Positives = 128/203 (63%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNE---DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + FN+ G + LA +VF V + ++H V Q A +QGTH TK SEV G
Sbjct: 1 MPKVSLFNQTGSQVGEIELADNVFGVEPNESVLHDAVVMQQASLRQGTHKTKGRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+ GG + GP PRS++ KL KKVRRL +K ALS++ +
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWVGGGVVFGPTPRSYSYKLPKKVRRLAIKSALSSKVKD 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+L+V +DL++ + KTK + + + K L+ +E + L+ +NL + L +
Sbjct: 121 SELVVLDDLKLEAIKTKAMKDVLASLSVDSKALVVTADY-NENVALSARNLPGITFLTAD 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
G+NV +L+HD LV+++DAV K+
Sbjct: 180 GVNVLDLLKHDKLVITKDAVEKV 202
>gi|334141184|ref|YP_004534390.1| 50S ribosomal protein L4 [Novosphingobium sp. PP1Y]
gi|359398246|ref|ZP_09191270.1| large subunit ribosomal protein L4 [Novosphingobium
pentaromativorans US6-1]
gi|333939214|emb|CCA92572.1| large subunit ribosomal protein L4 [Novosphingobium sp. PP1Y]
gi|357600664|gb|EHJ62359.1| large subunit ribosomal protein L4 [Novosphingobium
pentaromativorans US6-1]
Length = 207
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 91/195 (46%), Positives = 119/195 (61%), Gaps = 2/195 (1%)
Query: 111 KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRA 170
KG + L+ DVF + R DI+HRVV WQL R+ +T+ S+V+ TGKK RQKG G A
Sbjct: 14 KGDIELSDDVFGLEPRADILHRVVTWQLENRRGIARATRERSDVARTGKKWGRQKGGGTA 73
Query: 171 RHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPS 230
RHG P F GG HG + R I LNKK+R LGLK+ALS++A G LV D
Sbjct: 74 RHGDRAAPVFIGGGKAHGARRREFNISLNKKIRALGLKMALSSKAQNG--LVIVDTLDGE 131
Query: 231 HKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTL 290
KTK + + KKVL+ DG +++ A +N+ VNVLP+VG NVY IL+HDTL
Sbjct: 132 AKTKALAGQLAKAGFGKKVLVIDGEAVNDNFARAARNIVGVNVLPAVGANVYDILKHDTL 191
Query: 291 VMSRDAVNKIVDRMH 305
V++R AV K+ R +
Sbjct: 192 VLTRAAVEKLEARFN 206
>gi|374576228|ref|ZP_09649324.1| 50S ribosomal protein L4, bacterial/organelle [Bradyrhizobium sp.
WSM471]
gi|386402176|ref|ZP_10086954.1| 50S ribosomal protein L4, bacterial/organelle [Bradyrhizobium sp.
WSM1253]
gi|374424549|gb|EHR04082.1| 50S ribosomal protein L4, bacterial/organelle [Bradyrhizobium sp.
WSM471]
gi|385742802|gb|EIG62998.1| 50S ribosomal protein L4, bacterial/organelle [Bradyrhizobium sp.
WSM1253]
Length = 206
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 86/206 (41%), Positives = 128/206 (62%), Gaps = 1/206 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + VT ++ G + L+ +F + R+DII R V+WQL KRQ GTH K +E+ TG
Sbjct: 1 MELKVTTLEGKEAGSVQLSDTIFGLEPRQDIIARCVQWQLNKRQAGTHKAKGRAEIWRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP RSHA L KKVR L LK ALSA+A +G
Sbjct: 61 KKMYKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHATDLPKKVRALALKHALSAKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
L+V + + + KTK ++ +++ + T L+ DG ++ A +N+ ++VLP G
Sbjct: 121 DLIVIDKAALEAAKTKALLGHFSGLGLT-NALIIDGAELNNGFAAAARNIPNMDVLPIQG 179
Query: 279 LNVYSILQHDTLVMSRDAVNKIVDRM 304
+NVY IL+ LV+++ A++ + R
Sbjct: 180 INVYDILRRRKLVLTKAAIDALEARF 205
>gi|84685436|ref|ZP_01013334.1| 50S ribosomal protein L4 [Maritimibacter alkaliphilus HTCC2654]
gi|84666593|gb|EAQ13065.1| 50S ribosomal protein L4 [Rhodobacterales bacterium HTCC2654]
Length = 205
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/193 (45%), Positives = 117/193 (60%), Gaps = 2/193 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +F + R DI+HRVVRWQ QQGTH KT SE S + KK +RQKGTG AR
Sbjct: 14 GSVELDEALFGLEPRADILHRVVRWQRNNAQQGTHKVKTRSETSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG P FR G GP PRSH +L KK R+LGLK ALSA+A EG ++V + E
Sbjct: 74 HGDRNAPIFRKGGIYKGPTPRSHGHELTKKFRKLGLKHALSAKAQEGAIVVIDTAEADG- 132
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KTK + + K+ L+ DG ++E A +N+ ++VLPS+G NVY IL+ DTLV
Sbjct: 133 KTKVLAKLVKDL-GWKRALIIDGAEVNENFAKAARNIEGLDVLPSMGANVYDILKRDTLV 191
Query: 292 MSRDAVNKIVDRM 304
+++ V + R+
Sbjct: 192 LTKAGVEALEARL 204
>gi|39938687|ref|NP_950453.1| ribosomal protein L4 [Onion yellows phytoplasma OY-M]
gi|46577157|sp|P61067.1|RL4_ONYPE RecName: Full=50S ribosomal protein L4
gi|39721796|dbj|BAD04286.1| ribosomal protein L4 [Onion yellows phytoplasma OY-M]
Length = 207
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/201 (42%), Positives = 126/201 (62%), Gaps = 4/201 (1%)
Query: 101 IPVTNFFNEDKGFM---VLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P N N+ F+ VLA VFD+ + +++ VV Q A +QGTH+TKT + V+G
Sbjct: 1 MPKINILNQQGDFVSEKVLATTVFDIKPNQQVLYDVVNAQRAAMRQGTHATKTRALVAGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
GKKPWRQKGTGRARHG++R P +RGG GP PR +++K+N+KVR L LK ALS +A
Sbjct: 61 GKKPWRQKGTGRARHGSIRSPLWRGGGVTFGPSPRDYSVKVNQKVRSLALKSALSLQAKN 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+L+V +++ + +HKTK ++ T K L+ + E+L LA++NL Y+ + +
Sbjct: 121 NQLVVVDNINLATHKTKDFQQMLQKLNITSKSLIVVTQ-MTEQLALASRNLSYITLETAS 179
Query: 278 GLNVYSILQHDTLVMSRDAVN 298
+VY IL LV++ AVN
Sbjct: 180 HASVYQILNCKQLVLTAAAVN 200
>gi|319899098|ref|YP_004159191.1| 50S ribosomal protein L4 [Bartonella clarridgeiae 73]
gi|319403062|emb|CBI76617.1| 50S ribosomal protein L4 [Bartonella clarridgeiae 73]
Length = 206
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/206 (43%), Positives = 129/206 (62%), Gaps = 3/206 (1%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
DL+I + ++ G + ++ VF + R+DI+ RVVRWQL +RQ+GTH ++ S+VS T
Sbjct: 2 DLMIKTLD--GKEAGKVKVSESVFGLIPREDILQRVVRWQLTRRQKGTHQSQGRSDVSRT 59
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G K ++QKGTGRARH + R PQFRGG HGP RSHA L KKVR LGL++ALSA+
Sbjct: 60 GAKMFKQKGTGRARHSSARAPQFRGGGKAHGPVMRSHAHGLPKKVRALGLRLALSAKLKA 119
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
L+V ++L + KTK + ++++ LL G I A N+ ++VLP
Sbjct: 120 DDLIVVDELNIRDAKTKVLNANFSKL-GFNNALLIGGKEIDVNFFRAASNIPNIDVLPVQ 178
Query: 278 GLNVYSILQHDTLVMSRDAVNKIVDR 303
G+NVY IL+ LV+S++AV + +R
Sbjct: 179 GINVYDILRRGKLVLSKEAVEALEER 204
>gi|85374464|ref|YP_458526.1| 50S ribosomal protein L4 [Erythrobacter litoralis HTCC2594]
gi|122544174|sp|Q2N9B2.1|RL4_ERYLH RecName: Full=50S ribosomal protein L4
gi|84787547|gb|ABC63729.1| ribosomal protein L4 [Erythrobacter litoralis HTCC2594]
Length = 207
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 86/186 (46%), Positives = 118/186 (63%), Gaps = 1/186 (0%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
VF V R DI+HRVV WQL R+ T+ S+V+ TG K RQKG+G ARHG P
Sbjct: 22 VFGVEPRADILHRVVTWQLENRRGTARPTRERSDVARTGAKFGRQKGSGNARHGDRGAPI 81
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
F GG HG + R LNKK+R LGLK+ALS++A +G L+V + L++ KTK + +
Sbjct: 82 FIGGGKAHGARKRDFNPSLNKKIRALGLKMALSSKAKDG-LVVVDSLDLKDAKTKVLKGH 140
Query: 240 YNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNK 299
+++ KVL+ DG ++E A NL VNVLP++G NVY IL+HDTLV+++DAV K
Sbjct: 141 FDKAGWNGKVLVIDGESVNEGFSKAAGNLPGVNVLPAMGANVYDILKHDTLVLTKDAVEK 200
Query: 300 IVDRMH 305
+ R +
Sbjct: 201 LEARFN 206
>gi|357039748|ref|ZP_09101540.1| ribosomal protein L4/L1e [Desulfotomaculum gibsoniae DSM 7213]
gi|355357554|gb|EHG05327.1| ribosomal protein L4/L1e [Desulfotomaculum gibsoniae DSM 7213]
Length = 207
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/200 (42%), Positives = 127/200 (63%), Gaps = 1/200 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N + G + L D+F + + + +H VV QLA R+QGTH TKT +EVSG G+K
Sbjct: 4 VAMYNINGDQVGEIDLKEDIFGIAVHQQALHDVVTMQLAGRRQGTHDTKTRAEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQKGTGRARHG++R P +RGG + GP PRS++ ++ KKVRRL +K ALS++ G +
Sbjct: 64 PYRQKGTGRARHGSIRSPIWRGGGIVFGPHPRSYSYRVPKKVRRLAMKSALSSKVEGGTI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V E+L++ KTK +V N ++ K L+ K A +N+ + L GLN
Sbjct: 124 VVLEELKMDVPKTKDMVKILNNLKVDNKALVVTAERDDAVYKSA-RNIPGIKQLSVPGLN 182
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY +L H TLV+++DAV ++
Sbjct: 183 VYDLLAHKTLVITKDAVARV 202
>gi|253681900|ref|ZP_04862697.1| ribosomal protein, L4 [Clostridium botulinum D str. 1873]
gi|416350125|ref|ZP_11680767.1| 50S ribosomal protein L4 [Clostridium botulinum C str. Stockholm]
gi|253561612|gb|EES91064.1| ribosomal protein, L4 [Clostridium botulinum D str. 1873]
gi|338196362|gb|EGO88559.1| 50S ribosomal protein L4 [Clostridium botulinum C str. Stockholm]
Length = 206
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/203 (39%), Positives = 129/203 (63%), Gaps = 5/203 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + +N + G + LA VF V + D++H+VV QLA ++QGT S KT +EVSG
Sbjct: 1 MPTVDLYNREGQKVGDLQLAEAVFAVEVNADVLHQVVVAQLANKRQGTQSAKTRAEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
GKKPWRQKGTGRAR G++R PQ+ G + PKPR + + + K ++R+ +K AL+++ +
Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWIHGGIVFAPKPRDYRMAIPKSMKRVAMKSALTSKVND 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+L+V E+LE+ + KTK +V N E K +++ +E + + +N+ V+P
Sbjct: 121 QELVVLENLELEAPKTKEMVKMINAFEAKKPLIVVAES--NEVVYKSIRNIEGATVVPVN 178
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
+NVY IL+HD ++++DAV KI
Sbjct: 179 NINVYDILKHDKFIITKDAVAKI 201
>gi|325179760|emb|CCA14163.1| 50S ribosomal protein L4 putative [Albugo laibachii Nc14]
Length = 279
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/241 (39%), Positives = 138/241 (57%), Gaps = 15/241 (6%)
Query: 77 PSDLLLKKTVLTP------DITIGLHQDLVIPVTN--FFNEDKGFMVLAGD--VFDVPIR 126
PS+L L TP T + D P+ N F ++ LA D VF+VP+R
Sbjct: 40 PSNLALAPQKPTPAPRLIRTTTEVAYDDAGRPIINTLAFKDESVVNTLALDPSVFNVPLR 99
Query: 127 KDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTM 186
KDI+HRVVRWQLA R+ G H K+ SE G+ +K QKG+G+AR G +R PQ+RGG +
Sbjct: 100 KDILHRVVRWQLACRRSGNHKAKSRSETRGSTRKVRPQKGSGQARVGDVRAPQWRGGYCV 159
Query: 187 HGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVN--YYNQME 244
HGP R H+ L KKVR G+++ALS + EGKL + E+L+ KTK + + + +
Sbjct: 160 HGPVVRDHSYTLQKKVRAFGIRVALSQKLREGKLAIVENLDWDVVKTKELRDTLIARKWD 219
Query: 245 NTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNKIVDRM 304
N L DG + L+++N+ ++V+P +NVYSIL+ D L+ + DA+ DR
Sbjct: 220 NA---LFIDGEEVTTNFILSSRNIPCIDVIPQHKINVYSILKRDLLITTVDAITYFEDRF 276
Query: 305 H 305
H
Sbjct: 277 H 277
>gi|398383733|ref|ZP_10541796.1| 50S ribosomal protein L4, bacterial/organelle [Sphingobium sp.
AP49]
gi|397724178|gb|EJK84653.1| 50S ribosomal protein L4, bacterial/organelle [Sphingobium sp.
AP49]
Length = 207
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/194 (45%), Positives = 118/194 (60%), Gaps = 1/194 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L VF + R DI+HRVV WQL KR+ T+ S+V+ TGKK RQKG G AR
Sbjct: 14 GELELNDAVFGLEPRADILHRVVTWQLEKRRGTARGTRERSDVARTGKKFGRQKGGGTAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG R P F GG HG + R LNKKVR LGLK+ALS++ +G L + + L+V
Sbjct: 74 HGDRRAPVFIGGGKAHGARVRDFNPSLNKKVRALGLKMALSSKVKDGSLFIIDSLDVAEG 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KTK +V ++ N KVL DG ++ A+ N+ VN+LP+VG NVY IL+ D+LV
Sbjct: 134 KTKALVANLAKL-NLNKVLFIDGDAVNVSFAKASANIIGVNLLPAVGANVYDILKADSLV 192
Query: 292 MSRDAVNKIVDRMH 305
++R AV K+ R +
Sbjct: 193 LTRAAVEKLEARFN 206
>gi|254796648|ref|YP_003081484.1| ribosomal protein L4/L1 family [Neorickettsia risticii str.
Illinois]
gi|254589885|gb|ACT69247.1| ribosomal protein L4/L1 family [Neorickettsia risticii str.
Illinois]
Length = 214
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/203 (43%), Positives = 117/203 (57%), Gaps = 8/203 (3%)
Query: 110 DKGFMVLAGDV------FDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWR 163
D G LAG V + P R D++ V+ WQLAKR+ GTH TK ISEVSGT +KP+R
Sbjct: 10 DFGATSLAGSVAVDRALIEAPFRPDLLSLVINWQLAKRRAGTHKTKGISEVSGTTRKPYR 69
Query: 164 QKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVF 223
QKGTGRAR G+LR PQFR G + GP R H +NKKVR L ALS R AEG+L V
Sbjct: 70 QKGTGRARQGSLRAPQFRKGGIVFGPVVRQHGFSVNKKVRSFALCSALSMRFAEGRLFVL 129
Query: 224 EDLEVPSHKTKFIVNYY--NQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNV 281
E + K ++ ++ N + K L +E L A NLH+V VL NV
Sbjct: 130 ESCRLGESKAATLLKWFASNTELSVGKKFLIVMEEKNEDLLRAASNLHWVKVLWGSSANV 189
Query: 282 YSILQHDTLVMSRDAVNKIVDRM 304
Y ++ HD +++ + +V+ +V R+
Sbjct: 190 YDVVLHDFVLLEKASVDVLVKRL 212
>gi|312109262|ref|YP_003987578.1| 50S ribosomal protein L4/L1e [Geobacillus sp. Y4.1MC1]
gi|336233656|ref|YP_004586272.1| 50S ribosomal protein L4 [Geobacillus thermoglucosidasius C56-YS93]
gi|423718377|ref|ZP_17692559.1| 50S ribosomal protein L4/L1e [Geobacillus thermoglucosidans
TNO-09.020]
gi|311214363|gb|ADP72967.1| ribosomal protein L4/L1e [Geobacillus sp. Y4.1MC1]
gi|335360511|gb|AEH46191.1| ribosomal protein L4/L1e [Geobacillus thermoglucosidasius C56-YS93]
gi|383365187|gb|EID42488.1| 50S ribosomal protein L4/L1e [Geobacillus thermoglucosidans
TNO-09.020]
Length = 207
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/203 (41%), Positives = 127/203 (62%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N++ G + L VF + K ++ V Q A +QGTH TK +EVSG
Sbjct: 1 MPKVALYNQNGETIGEIELNDSVFGIEPNKHVLFEAVIMQRASLRQGTHKTKNRAEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG T+ GP PRS++ KL KKVRRL +K ALS++ E
Sbjct: 61 GRKPWRQKGTGRARQGSIRAPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++V ++L + + KTK +V N + +K L+ +E + L+ +N+ V V+ +
Sbjct: 121 NNIVVLDNLTLEAPKTKEMVKILNNLSVDRKALIVT-DVANENVALSARNIPGVTVVTAN 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
G+NV +L HD LV+++ AV K+
Sbjct: 180 GINVLDLLNHDKLVITKAAVEKV 202
>gi|188581376|ref|YP_001924821.1| 50S ribosomal protein L4 [Methylobacterium populi BJ001]
gi|226730691|sp|B1ZLK5.1|RL4_METPB RecName: Full=50S ribosomal protein L4
gi|179344874|gb|ACB80286.1| ribosomal protein L4/L1e [Methylobacterium populi BJ001]
Length = 206
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/204 (41%), Positives = 123/204 (60%), Gaps = 1/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ +T G + L +F + R DI+ R+VR+QLAKR+ GTH+ K S+V T KK
Sbjct: 3 LDITTLDGGSAGSLELNEAIFGLEPRADILQRMVRYQLAKRRAGTHAVKNRSDVDRTTKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTG ARHG PQFRGG GP R H+ L KKVR L LK ALS++A L
Sbjct: 63 LYKQKGTGNARHGAASAPQFRGGGRAFGPVVRDHSHDLPKKVRALALKHALSSKAKTSTL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V +D++V SHKTK ++ + ++ L+ G + E A + + ++VLP G+N
Sbjct: 123 IVVDDIKVDSHKTKAMIERFEKL-GLSSALIIGGSEVDENFGRAARAIPKIDVLPVQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL+ DTLV++R AV+ + +R
Sbjct: 182 VYDILRRDTLVLTRAAVDALEERF 205
>gi|182678338|ref|YP_001832484.1| 50S ribosomal protein L4 [Beijerinckia indica subsp. indica ATCC
9039]
gi|226730620|sp|B2IK63.1|RL4_BEII9 RecName: Full=50S ribosomal protein L4
gi|182634221|gb|ACB94995.1| ribosomal protein L4/L1e [Beijerinckia indica subsp. indica ATCC
9039]
Length = 206
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 83/206 (40%), Positives = 127/206 (61%), Gaps = 1/206 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ I +T+ E G + L +F + R D+I R++R+QLAKR+ GTH + +++ TG
Sbjct: 1 MKIDITSVNGETAGSIDLDDAIFGLEPRVDLIARMIRYQLAKRRAGTHQSLGRADIHRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP RSH L KK+R L LK ALSA+A +G
Sbjct: 61 KKMYKQKGTGSARHGSARAPQFRGGGKAFGPVARSHEHDLPKKIRALALKHALSAKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
++++ D ++P KTK + + ++ T L+ DG + LA +N+ ++VLP G
Sbjct: 121 GIIIWNDAKIPEAKTKGLKANFEKIGLT-NALIIDGAELETNFSLAARNIPQIDVLPVQG 179
Query: 279 LNVYSILQHDTLVMSRDAVNKIVDRM 304
+NVY I++ D LV++ A+N + R
Sbjct: 180 INVYDIVRRDKLVLTTAAINALEARF 205
>gi|415886278|ref|ZP_11548101.1| 50S ribosomal protein L4 [Bacillus methanolicus MGA3]
gi|387588931|gb|EIJ81252.1| 50S ribosomal protein L4 [Bacillus methanolicus MGA3]
Length = 207
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/203 (42%), Positives = 123/203 (60%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN++ G + L VF + K ++ V Q A +QGTH TK SEVSG
Sbjct: 1 MPKVALFNQNGSQVGEIELNDAVFGIEPNKHVLFEAVVMQRASLRQGTHKTKIRSEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG T+ GP PRS++ KL KKVRRL +K ALS++ E
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+LV E+L + KTK V + K L+ + E + L+ +N+ V V+ +
Sbjct: 121 ENILVLENLVFETPKTKDFVGVLKNLSVDSKALVVTAD-LDENVALSARNIPGVTVVAAN 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
G+NV +L HD L+M++ AV K+
Sbjct: 180 GINVLDVLNHDKLIMTKAAVEKV 202
>gi|172056141|ref|YP_001812601.1| 50S ribosomal protein L4 [Exiguobacterium sibiricum 255-15]
gi|407475994|ref|YP_006789871.1| 50S ribosomal protein L4 [Exiguobacterium antarcticum B7]
gi|226730665|sp|B1YGV1.1|RL4_EXIS2 RecName: Full=50S ribosomal protein L4
gi|171988662|gb|ACB59584.1| ribosomal protein L4/L1e [Exiguobacterium sibiricum 255-15]
gi|407060073|gb|AFS69263.1| 50S ribosomal protein L4 [Exiguobacterium antarcticum B7]
Length = 207
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 124/189 (65%), Gaps = 1/189 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + LA VF + + +++ + Q A R+QGTH TK SEV G G+KPW+QKGTGRAR
Sbjct: 15 GDIELADAVFGIEPNEAVVYDAIVMQQASRRQGTHDTKGRSEVRGGGRKPWKQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+ GG T+ GP PRS+A KL KKVRRL L+ ALS++ A + +V E L + +
Sbjct: 75 QGSIRSPQWVGGGTVFGPTPRSYAYKLPKKVRRLALRSALSSKVANNEFIVLEGLTIDAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KTK +++ + + +KVL+ +E + L+T+N+ V V+ + G+NV ++ HD ++
Sbjct: 135 KTKDMISVFAALSIERKVLVVTADY-NETVVLSTRNIPGVTVVDAAGVNVLDLVAHDKVI 193
Query: 292 MSRDAVNKI 300
++DAV ++
Sbjct: 194 FTKDAVARV 202
>gi|46205275|ref|ZP_00048760.2| COG0088: Ribosomal protein L4 [Magnetospirillum magnetotacticum
MS-1]
Length = 206
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/204 (41%), Positives = 122/204 (59%), Gaps = 1/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ +T G + L +F + R DI+ R+VR+QLAKR+ GTH+ K S+V T KK
Sbjct: 3 LDITTLDGGSAGSVELNEAIFGLEPRADILQRMVRYQLAKRRAGTHAVKNRSDVDRTSKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTG ARHG PQFRGG GP R H+ L KKVR L LK ALS +A L
Sbjct: 63 LYKQKGTGNARHGAASAPQFRGGGRAFGPVVRDHSHDLPKKVRALALKHALSTKAKASTL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V +D++V SHKTK ++ + ++ L+ G + E A + + ++VLP G+N
Sbjct: 123 IVVDDIKVDSHKTKAMIERFEKL-GLSSALIIGGSEVDENFGRAARAIPKIDVLPVQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL+ DTLV++R AV+ + +R
Sbjct: 182 VYDILRRDTLVLTRAAVDALEERF 205
>gi|326436109|gb|EGD81679.1| hypothetical protein PTSG_02393 [Salpingoeca sp. ATCC 50818]
Length = 243
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 86/195 (44%), Positives = 119/195 (61%), Gaps = 12/195 (6%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G M L VF +RKDI+ RVV +Q A + GT TKT SEV G GKKPW+QKGTGRAR
Sbjct: 38 GMMELDPTVFGEDLRKDILQRVVVFQRASWRAGTAKTKTRSEVRGGGKKPWQQKGTGRAR 97
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
++R P FRGG T+HGP P+ +IKL KKV+R+G+++ALSA+ A+ LL+ + L +PS
Sbjct: 98 ASSIRSPLFRGGGTVHGPTPKDWSIKLPKKVQRMGVRVALSAKLAQNDLLIVDSLNLPS- 156
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
+ E+ + L + + L A + L V V+P +NVY +L H TL+
Sbjct: 157 ---------SNEEDLLEALFSN--SLPPNLSAAAEGLDDVTVMPQRDINVYDMLNHPTLI 205
Query: 292 MSRDAVNKIVDRMHT 306
MS DAV ++ + T
Sbjct: 206 MSMDAVREVEQWLST 220
>gi|298291439|ref|YP_003693378.1| 50S ribosomal protein L4 [Starkeya novella DSM 506]
gi|296927950|gb|ADH88759.1| ribosomal protein L4/L1e [Starkeya novella DSM 506]
Length = 206
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 84/203 (41%), Positives = 124/203 (61%), Gaps = 1/203 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V D G + L+ ++F + R+DI+HR+V WQLA+RQ GTH T + SEV+ T +K
Sbjct: 3 LAVKKLDGTDAGSVTLSDEIFGLEPRQDILHRMVVWQLARRQAGTHQTLSRSEVNRTKRK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTG ARHG PQFRGG P SHAI L KKVR L LK ALS++A + ++
Sbjct: 63 MYKQKGTGGARHGAASAPQFRGGAKAFAPVQHSHAIDLPKKVRALALKHALSSKAKDQQI 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V +D + KTK + + VL+ G + LA++N+ +++VLP G+N
Sbjct: 123 VVLDDATLAEPKTKLLKERLAGL-GLSNVLVVSGAEVDANFGLASRNVGHLDVLPVQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDR 303
VY IL+ TLV+++ AV+ + R
Sbjct: 182 VYDILRRQTLVLTKAAVDALEAR 204
>gi|433447313|ref|ZP_20410910.1| 50S ribosomal protein L4 [Anoxybacillus flavithermus TNO-09.006]
gi|431999977|gb|ELK20884.1| 50S ribosomal protein L4 [Anoxybacillus flavithermus TNO-09.006]
Length = 207
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 84/203 (41%), Positives = 127/203 (62%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N E+ G + L VF + K ++ V Q A +QGTH TK +EVSG
Sbjct: 1 MPKVALYNQNGENIGEIELNDAVFGIEPNKHVLFEAVIMQRASLRQGTHKTKNRAEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ KL KKVRRL +K ALS++ E
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++V ++L++ + KTK +V N + +K L+ +E + L+ +N+ V V+ +
Sbjct: 121 NNIVVLDNLKLEAPKTKEMVKILNNLSVDRKALIVTADA-NENVILSARNIPGVTVVTAS 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
G+NV +L HD LV+++ AV K+
Sbjct: 180 GINVLDVLNHDKLVITKAAVEKV 202
>gi|169830437|ref|YP_001716419.1| 50S ribosomal protein L4 [Candidatus Desulforudis audaxviator
MP104C]
gi|226730652|sp|B1I1I9.1|RL4_DESAP RecName: Full=50S ribosomal protein L4
gi|169637281|gb|ACA58787.1| ribosomal protein L4/L1e [Candidatus Desulforudis audaxviator
MP104C]
Length = 207
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/203 (41%), Positives = 125/203 (61%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN + G + L+ VF P+ ++H VV QLA R+QGTH TKT SEV G
Sbjct: 1 MPTAAVFNIEGQQVGEIELSEAVFGQPVNDAVLHEVVVMQLANRRQGTHDTKTRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRARHGT+R P +RGG + GP PR ++ ++ KKV+RL LK AL+ +
Sbjct: 61 GRKPWRQKGTGRARHGTIRSPIWRGGGIVFGPHPRDYSYRVPKKVKRLALKSALATKVDA 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
G++LV + LE+P KTK + ++ + L+ + ++ + +NL V L +
Sbjct: 121 GRILVLDALELPGPKTKEMARILANLKAGEGALVVTAER-NVNVEKSARNLPGVKSLEAR 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
LNVY +L H L+++RDAV ++
Sbjct: 180 QLNVYDLLNHPHLIITRDAVARV 202
>gi|114570344|ref|YP_757024.1| 50S ribosomal protein L4 [Maricaulis maris MCS10]
gi|122315785|sp|Q0ANQ1.1|RL4_MARMM RecName: Full=50S ribosomal protein L4
gi|114340806|gb|ABI66086.1| LSU ribosomal protein L4P [Maricaulis maris MCS10]
Length = 211
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 87/205 (42%), Positives = 124/205 (60%), Gaps = 2/205 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
I V +D G + L VF + +R D++ RVV+WQLA RQQGTH T SE++ T K
Sbjct: 3 IEVKTLAAKDAGAIDLDDAVFGIEEVRSDLLQRVVKWQLAARQQGTHKTLGRSEINRTKK 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
+ RQKG G ARHG PQF GG HGP+ RSHA +L KKVR LGL+ ALSA+
Sbjct: 63 RFGRQKGGGTARHGARSAPQFVGGGKAHGPRVRSHAHELPKKVRALGLRHALSAKLGAKS 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGL 279
L++ +D + + +TK + + + L+ G ++E A +NL ++VLP+ GL
Sbjct: 123 LVIIDDAALDAPQTKALRTSFEGL-GISNALVISGAEVNENFAKAARNLPCIDVLPAQGL 181
Query: 280 NVYSILQHDTLVMSRDAVNKIVDRM 304
NVY +L+ DTLV+++ AV +I R+
Sbjct: 182 NVYDVLRRDTLVLTKAAVEQIHARL 206
>gi|56418642|ref|YP_145960.1| 50S ribosomal protein L4 [Geobacillus kaustophilus HTA426]
gi|261417608|ref|YP_003251290.1| 50S ribosomal protein L4 [Geobacillus sp. Y412MC61]
gi|297528483|ref|YP_003669758.1| ribosomal protein L4/L1e [Geobacillus sp. C56-T3]
gi|319765266|ref|YP_004130767.1| 50S ribosomal protein L4 [Geobacillus sp. Y412MC52]
gi|375006921|ref|YP_004980551.1| 50S ribosomal protein L4 [Geobacillus thermoleovorans CCB_US3_UF5]
gi|448236416|ref|YP_007400474.1| 50S ribosomal protein L4 [Geobacillus sp. GHH01]
gi|81558135|sp|Q5L3Z6.1|RL4_GEOKA RecName: Full=50S ribosomal protein L4
gi|56378484|dbj|BAD74392.1| 50S ribosomal protein L4 [Geobacillus kaustophilus HTA426]
gi|261374065|gb|ACX76808.1| ribosomal protein L4/L1e [Geobacillus sp. Y412MC61]
gi|297251735|gb|ADI25181.1| ribosomal protein L4/L1e [Geobacillus sp. C56-T3]
gi|317110132|gb|ADU92624.1| ribosomal protein L4/L1e [Geobacillus sp. Y412MC52]
gi|359285767|gb|AEV17451.1| 50S ribosomal protein L4 [Geobacillus thermoleovorans CCB_US3_UF5]
gi|445205258|gb|AGE20723.1| 50S ribosomal protein L4 [Geobacillus sp. GHH01]
Length = 207
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 84/203 (41%), Positives = 127/203 (62%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N++ G + L VF + K ++ V Q A +QGTH TK +EVSG
Sbjct: 1 MPKVALYNQNGQTVGEIELNDAVFGIEPNKHVLFEAVIMQRASMRQGTHKTKNRAEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG T+ GP PRS++ KL KKVRRL +K ALS++ E
Sbjct: 61 GRKPWRQKGTGRARQGSIRAPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++V + L + + KTK +V N + +K L+ ++E + L+ +N+ V V+ +
Sbjct: 121 NDIVVLDQLSLEAPKTKEMVKILNNLSVDRKALIVT-DELNENVYLSARNIPGVKVVAAN 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
G+NV +L HD LV+++ AV K+
Sbjct: 180 GINVLDVLNHDKLVITKAAVEKV 202
>gi|147676656|ref|YP_001210871.1| 50S ribosomal protein L4 [Pelotomaculum thermopropionicum SI]
gi|189029511|sp|A5D5J1.1|RL4_PELTS RecName: Full=50S ribosomal protein L4
gi|146272753|dbj|BAF58502.1| ribosomal protein L4 [Pelotomaculum thermopropionicum SI]
Length = 206
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 83/203 (40%), Positives = 124/203 (61%), Gaps = 5/203 (2%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N E G + L ++F V + + ++H V LA R+ GTH TKT SEV G
Sbjct: 1 MPTVALYNTNGEQVGELALKDEIFGVEVHEPVLHDAVVMHLANRRLGTHDTKTRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRARHG++R P +RGG + GP PR ++ L +KVRRL LK ALSA+
Sbjct: 61 GRKPWRQKGTGRARHGSIRSPLWRGGGIIFGPHPRDYSYSLPRKVRRLALKSALSAKVNS 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
G +LV ++L++ KTK + N ++ +L+ E ++ + +N+ + + +
Sbjct: 121 GDILVLDELKLDQPKTKEMARILNNLKVDDALLVT--AEKDEAVERSARNIPNIKPVQAA 178
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
LNVY IL +D LVM+RDAV ++
Sbjct: 179 LLNVYDILAYDKLVMTRDAVARV 201
>gi|85057801|ref|YP_456717.1| 50S ribosomal protein L4 [Aster yellows witches'-broom phytoplasma
AYWB]
gi|109893576|sp|Q2NIV5.1|RL4_AYWBP RecName: Full=50S ribosomal protein L4
gi|84789906|gb|ABC65638.1| LSU ribosomal protein L1E [Aster yellows witches'-broom phytoplasma
AYWB]
Length = 207
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 126/201 (62%), Gaps = 4/201 (1%)
Query: 101 IPVTNFFNEDKGFM---VLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P N N+ + VLA VFD+ + +++ VV Q A +QGTH+TKT + V+G
Sbjct: 1 MPKINILNQQGDLVSEKVLATTVFDIKPNQQVLYDVVNAQRAAMRQGTHATKTRALVAGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
GKKPWRQKGTGRARHG++R P +RGG GP PR++++K+N+KVR L LK ALS +
Sbjct: 61 GKKPWRQKGTGRARHGSIRSPLWRGGGVTFGPSPRNYSVKVNQKVRILALKSALSLQVQN 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+L+V +++ + +HKTK ++ T K L+ + E+L LA++NL Y+ + +
Sbjct: 121 NQLVVLDNINLATHKTKDFQQMLQKLNITSKSLIVVTQ-MTEQLALASRNLSYITLETAS 179
Query: 278 GLNVYSILQHDTLVMSRDAVN 298
+VY IL LV++ DAVN
Sbjct: 180 HASVYQILNCKQLVLTADAVN 200
>gi|315497974|ref|YP_004086778.1| 50S ribosomal protein L4/l1e [Asticcacaulis excentricus CB 48]
gi|315415986|gb|ADU12627.1| ribosomal protein L4/L1e [Asticcacaulis excentricus CB 48]
Length = 210
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 89/205 (43%), Positives = 124/205 (60%), Gaps = 2/205 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
+ V N G + ++ VF + IR DI+ RVV WQLAKR+ GTH +T +E S TGK
Sbjct: 3 LDVITLDNGTAGSVDVSDAVFGLEEIRNDILARVVNWQLAKRRAGTHKVQTRNENSRTGK 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
K ++QKG+G ARHG+ R PQF GG+ GP RSHA L KKVR LGL+ ALS++A G
Sbjct: 63 KMYKQKGSGGARHGSRRAPQFVGGSRAFGPVVRSHAFDLQKKVRALGLRHALSSKAKAGA 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGL 279
L+V + + S KT + + + K L+ G + LA++N+ ++VLPS GL
Sbjct: 123 LIVLDQATLDSAKTAALRAKFETL-GLKNALIIAGPEVDTNFALASRNIPNIDVLPSAGL 181
Query: 280 NVYSILQHDTLVMSRDAVNKIVDRM 304
NVY +L+ TLV+++ AV I R
Sbjct: 182 NVYDVLRRHTLVLTKSAVEAIEARF 206
>gi|83949794|ref|ZP_00958527.1| 50S ribosomal protein L4 [Roseovarius nubinhibens ISM]
gi|83837693|gb|EAP76989.1| 50S ribosomal protein L4 [Roseovarius nubinhibens ISM]
Length = 205
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 88/193 (45%), Positives = 118/193 (61%), Gaps = 2/193 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L D+F + R DI+HRVVRWQ K QQGTH KT SE S + KK +RQKGTG AR
Sbjct: 14 GSVDLGEDIFGLEPRADILHRVVRWQRNKAQQGTHKVKTRSETSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG P FR G GP PRSHA L KKVR LGLK ALSA+ G+L++ E + +
Sbjct: 74 HGDRNAPIFRKGGIYKGPTPRSHAHDLPKKVRMLGLKHALSAKVKAGELVIIEAAD-SAG 132
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KT + + K+ L+ DG ++ + A +N+ ++VLPS+G NVY IL+ DTLV
Sbjct: 133 KTSALAKQVKDL-GWKRALIIDGAEVNAEFAKAARNIEGLDVLPSMGANVYDILKRDTLV 191
Query: 292 MSRDAVNKIVDRM 304
+++ V + R+
Sbjct: 192 LTKAGVEALEARL 204
>gi|399069900|ref|ZP_10749570.1| 50S ribosomal protein L4, bacterial/organelle [Caulobacter sp.
AP07]
gi|398044816|gb|EJL37612.1| 50S ribosomal protein L4, bacterial/organelle [Caulobacter sp.
AP07]
Length = 212
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 82/179 (45%), Positives = 115/179 (64%), Gaps = 1/179 (0%)
Query: 125 IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGT 184
IR DI+ RVV WQLAKR+ G H + +EVS TGKK ++QKGTG ARHG+ R QF GG
Sbjct: 28 IRGDILQRVVTWQLAKRRSGNHKIQVRNEVSRTGKKMYKQKGTGSARHGSRRAAQFVGGA 87
Query: 185 TMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQME 244
HGP RSHA L KK+R + L+ ALS++A G L+V +++ + KT + +++M
Sbjct: 88 KAHGPVVRSHAFDLPKKIRAMALRHALSSKAKAGSLIVLDNVALTDPKTAALRATFDKM- 146
Query: 245 NTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNKIVDR 303
K L+ G + KLA +N+ ++VLP+ GLNVY +L+ TLV+++DAV I R
Sbjct: 147 GLKNALVIAGPEVDGNFKLAARNIPNIDVLPNAGLNVYDVLRRHTLVLTKDAVEAISAR 205
>gi|212637955|ref|YP_002314475.1| 50S ribosomal protein L4 [Anoxybacillus flavithermus WK1]
gi|226730612|sp|B7GJ68.1|RL4_ANOFW RecName: Full=50S ribosomal protein L4
gi|212559435|gb|ACJ32490.1| Ribosomal protein L4 [Anoxybacillus flavithermus WK1]
Length = 207
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 84/203 (41%), Positives = 126/203 (62%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N E+ G + L VF + K ++ V Q A +QGTH TK +EVSG
Sbjct: 1 MPKVALYNQNGENIGEIELNDAVFGIEPNKHVLFEAVIMQRASLRQGTHKTKNRAEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ KL KKVRRL +K ALS++ E
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++V ++L + + KTK +V N + +K L+ +E + L+ +N+ V V+ +
Sbjct: 121 NSIVVLDNLTLEAPKTKEMVKILNNLSVDRKALIVTADA-NENVILSARNIPGVTVVTAS 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
G+NV +L HD LV+++ AV K+
Sbjct: 180 GINVLDVLNHDKLVITKAAVEKV 202
>gi|196251023|ref|ZP_03149705.1| ribosomal protein L4/L1e [Geobacillus sp. G11MC16]
gi|196209495|gb|EDY04272.1| ribosomal protein L4/L1e [Geobacillus sp. G11MC16]
Length = 207
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 84/203 (41%), Positives = 127/203 (62%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N++ G + L VF + K ++ V Q A +QGTH TK +EVSG
Sbjct: 1 MPKVALYNQNGQTIGEIELNDAVFGIEPNKHVLFEAVIMQRASMRQGTHKTKNRAEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG T+ GP PRS++ KL KKVRRL +K ALS++ E
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++V + L + + KTK +V N + +K L+ ++E + L+ +N+ V V+ +
Sbjct: 121 NDIVVLDQLSLEAPKTKEMVKILNNLAVDRKALIVT-DELNENVYLSARNIPGVKVVAAN 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
G+NV +L HD LV+++ AV K+
Sbjct: 180 GINVLDVLNHDKLVITKAAVEKV 202
>gi|138893786|ref|YP_001124239.1| 50S ribosomal protein L4 [Geobacillus thermodenitrificans NG80-2]
gi|166234670|sp|A4IJJ0.1|RL4_GEOTN RecName: Full=50S ribosomal protein L4
gi|134265299|gb|ABO65494.1| Ribosomal protein L4 [Geobacillus thermodenitrificans NG80-2]
Length = 207
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 84/203 (41%), Positives = 127/203 (62%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N++ G + L VF + K ++ V Q A +QGTH TK +EVSG
Sbjct: 1 MPKVALYNQNGQTIGEIELNDAVFGIEPNKHVLFEAVIMQRASMRQGTHKTKNRAEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG T+ GP PRS++ KL KKVRRL +K ALS++ E
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++V + L + + KTK +V N + +K L+ ++E + L+ +N+ V V+ +
Sbjct: 121 NDIVVLDQLSLEAPKTKEMVKILNNLAVDRKALIVT-DELNENVYLSARNIPGVKVVAAN 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
G+NV +L HD LV+++ AV K+
Sbjct: 180 GINVLDVLSHDKLVITKAAVEKV 202
>gi|348533363|ref|XP_003454175.1| PREDICTED: 39S ribosomal protein L4, mitochondrial-like
[Oreochromis niloticus]
Length = 302
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 93/272 (34%), Positives = 153/272 (56%), Gaps = 30/272 (11%)
Query: 59 SRKFSTTILTPDSSEGAFPSDLLLKKTVLTPD------------ITIGLHQDLVIP---- 102
+++F++++ S+E A P +LLL ++ PD + + D +P
Sbjct: 14 AKRFASSL----SNESALPPNLLLPTNLVDPDRLKRPPPPADSSLPLLRKCDAAVPAHLT 69
Query: 103 -----VTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEV 154
V + +D G L DVF VP R DI+H V WQ ++ TK SEV
Sbjct: 70 PVQTWVESLERQDSEPLGVAQLHPDVFAVPPRLDILHSVETWQRNYKRISHAHTKVRSEV 129
Query: 155 SGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSA 213
SG G+KPW+QKG+GRARHG++R P +RGG HGP+ P S+ L KVR GLK+ALS+
Sbjct: 130 SGGGRKPWKQKGSGRARHGSIRSPIWRGGGVSHGPRGPTSYYYMLPMKVRVQGLKVALSS 189
Query: 214 RAAEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCD-GGCIHEKLKLATQNLHYVN 272
+ A+ L + + L +P+ ++++++ + VL+ D G E + AT NL VN
Sbjct: 190 KKAQDDLHIVDSLNIPTPDSQYLLDLIRHRHWGESVLIVDVGEDFSENILQATANLKTVN 249
Query: 273 VLPSVGLNVYSILQHDTLVMSRDAVNKIVDRM 304
++P++GLNV+S+L+H+ +V++ + + + D++
Sbjct: 250 IIPAIGLNVHSMLKHEAIVLTLETLKFLEDKL 281
>gi|163851586|ref|YP_001639629.1| 50S ribosomal protein L4 [Methylobacterium extorquens PA1]
gi|218530395|ref|YP_002421211.1| 50S ribosomal protein L4 [Methylobacterium extorquens CM4]
gi|240138754|ref|YP_002963226.1| 50S ribosomal subunit protein L4 [Methylobacterium extorquens AM1]
gi|254561354|ref|YP_003068449.1| 50S ribosomal subunit protein L4, regulates expression of S10
operon [Methylobacterium extorquens DM4]
gi|418058029|ref|ZP_12696010.1| ribosomal protein L4/L1e [Methylobacterium extorquens DSM 13060]
gi|226730686|sp|A9W4Q2.1|RL4_METEP RecName: Full=50S ribosomal protein L4
gi|254803743|sp|B7L0R2.1|RL4_METC4 RecName: Full=50S ribosomal protein L4
gi|163663191|gb|ABY30558.1| ribosomal protein L4/L1e [Methylobacterium extorquens PA1]
gi|218522698|gb|ACK83283.1| ribosomal protein L4/L1e [Methylobacterium extorquens CM4]
gi|240008723|gb|ACS39949.1| 50S ribosomal subunit protein L4, regulates expression of S10
operon [Methylobacterium extorquens AM1]
gi|254268632|emb|CAX24591.1| 50S ribosomal subunit protein L4, regulates expression of S10
operon [Methylobacterium extorquens DM4]
gi|373568357|gb|EHP94305.1| ribosomal protein L4/L1e [Methylobacterium extorquens DSM 13060]
Length = 206
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 84/203 (41%), Positives = 123/203 (60%), Gaps = 1/203 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ +T G + L ++ + R DI+ R+VR+QLAKR+ GTH+ K S+V T KK
Sbjct: 3 LDITTLDGGSAGSVELNEAIYGLEPRADILQRMVRYQLAKRRAGTHAVKNRSDVDRTSKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTG ARHG PQFRGG GP R H+ L KKVR L LK ALSA+A L
Sbjct: 63 LYKQKGTGNARHGAASAPQFRGGGRAFGPVVRDHSHDLPKKVRALALKHALSAKAKASTL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V +D++V +HKTK ++ + ++ L+ G + E A + + ++VLP G+N
Sbjct: 123 IVVDDIKVDNHKTKAMIERFEKL-GLSSALIIGGSEVDENFGRAARAIPKIDVLPVQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDR 303
VY IL+ DTLV++R AV+ + +R
Sbjct: 182 VYDILRRDTLVLTRAAVDALEER 204
>gi|289449461|ref|YP_003475783.1| 50S ribosomal protein L4 [Clostridiales genomosp. BVAB3 str.
UPII9-5]
gi|289184008|gb|ADC90433.1| 50S ribosomal protein L4 [Clostridiales genomosp. BVAB3 str.
UPII9-5]
Length = 207
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 85/192 (44%), Positives = 127/192 (66%), Gaps = 7/192 (3%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ VF + + ++H+VV+ QLA R+QGT STKT SEVSG GK+PWRQKGTGRAR
Sbjct: 15 GQIELSDAVFGIEPNQSVMHQVVKNQLANRRQGTGSTKTRSEVSGGGKRPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG+ R Q+ GG + GPKPR + ++KKVRRL +K ALS + E +L+V E+ E+
Sbjct: 75 HGSTRSAQYVGGGIIFGPKPRDYHYTVSKKVRRLAIKSALSTKLQEKQLIVVENFELAEA 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEK---LKLATQNLHYVNVLPSVGLNVYSILQHD 288
KTK V ++ T +VL+ + +EK L+LA +N+ V + + +NV+ +L+++
Sbjct: 135 KTKNFVTALKKLNVTDRVLVVE----NEKNVNLELAARNIAKVQLSRANTINVFDLLKNE 190
Query: 289 TLVMSRDAVNKI 300
L++S+ AV KI
Sbjct: 191 VLLISKAAVEKI 202
>gi|452752806|ref|ZP_21952546.1| LSU ribosomal protein L4p (L1e) [alpha proteobacterium JLT2015]
gi|451959878|gb|EMD82294.1| LSU ribosomal protein L4p (L1e) [alpha proteobacterium JLT2015]
Length = 206
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 87/194 (44%), Positives = 120/194 (61%), Gaps = 2/194 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++F + R DI+HRVV WQLA R+ + + +V+ T KK RQKG G AR
Sbjct: 14 GDIELPEEIFGLEARPDILHRVVTWQLANRRGMARAARERGDVARTSKKFGRQKGGGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG+ + P F GG HGPK R+ LNKKVR LGLK ALS +AAEGKL+V +DL++
Sbjct: 74 HGSRKAPIFVGGGKAHGPKARTFEQSLNKKVRVLGLKTALSVKAAEGKLVVLKDLDLKDA 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KTK + ++ ++ L D +E K A NL +++VLP+ G NVY IL HDTLV
Sbjct: 134 KTKALKESLGKL-GFERALFIDAET-NEGFKKAAANLPHIDVLPTAGANVYDILNHDTLV 191
Query: 292 MSRDAVNKIVDRMH 305
+++ AV K+ R +
Sbjct: 192 LTKAAVEKLEARFN 205
>gi|307946287|ref|ZP_07661622.1| ribosomal protein, L4/L1 family [Roseibium sp. TrichSKD4]
gi|307769951|gb|EFO29177.1| ribosomal protein, L4/L1 family [Roseibium sp. TrichSKD4]
Length = 206
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 90/193 (46%), Positives = 122/193 (63%), Gaps = 1/193 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + ++ ++F + R D+IHRVVRWQLAKRQ GTH T SEV+GT KK RQKG+G AR
Sbjct: 14 GSITVSDEIFGLEPRTDLIHRVVRWQLAKRQAGTHKTLQRSEVTGTTKKFVRQKGSGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG + PQFRGG GP R H+ L KKVR LGLK LSA+A L+V ED +
Sbjct: 74 HGNRKAPQFRGGGKAFGPIVRDHSHDLPKKVRVLGLKHVLSAKAKADSLIVVEDAKAAEA 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KTK + + T L+ DG + LA++N+ +V+VLP G+NVY I+Q +TLV
Sbjct: 134 KTKALKEQLAKAGLT-SALIIDGAEVDANFALASRNIPHVDVLPVQGINVYDIMQANTLV 192
Query: 292 MSRDAVNKIVDRM 304
+++ AV+ + +R
Sbjct: 193 LTKAAVSALEERF 205
>gi|312115688|ref|YP_004013284.1| 50S ribosomal protein L4 [Rhodomicrobium vannielii ATCC 17100]
gi|311220817|gb|ADP72185.1| ribosomal protein L4/L1e [Rhodomicrobium vannielii ATCC 17100]
Length = 206
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 86/194 (44%), Positives = 118/194 (60%), Gaps = 1/194 (0%)
Query: 110 DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGR 169
+ G + L VF + R DI+ R+VR+QL+KRQ GTH K SEV+G KK ++QKGTG+
Sbjct: 12 NAGSVELDDAVFALEPRTDILQRMVRYQLSKRQAGTHKAKARSEVNGPNKKIYKQKGTGQ 71
Query: 170 ARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVP 229
ARHG + PQFRGG GP PRSHA L KKVR L LK ALS +A L+V + EV
Sbjct: 72 ARHGNDKPPQFRGGGRTAGPVPRSHAHDLPKKVRALALKHALSVKAKSDALVVLDKAEVT 131
Query: 230 SHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDT 289
KT + + + L+ DG + + LA +N+ V+VLP G+NVY IL+ +
Sbjct: 132 EAKTAQLRGKFAGL-GLSNALIIDGAVLQDNFALAARNIPNVDVLPVQGINVYDILRREK 190
Query: 290 LVMSRDAVNKIVDR 303
LV++R A+ + +R
Sbjct: 191 LVLTRAALEALEER 204
>gi|118591183|ref|ZP_01548582.1| 50S ribosomal protein L4 [Stappia aggregata IAM 12614]
gi|118436259|gb|EAV42901.1| 50S ribosomal protein L4 [Stappia aggregata IAM 12614]
Length = 206
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 89/193 (46%), Positives = 125/193 (64%), Gaps = 1/193 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + ++ ++F + R D+IHRVVRWQLAKRQ GTH SEVSGT KK RQKG+G AR
Sbjct: 14 GSITVSDEIFGLEPRTDLIHRVVRWQLAKRQAGTHKALGRSEVSGTTKKFVRQKGSGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG + PQFRGG GP R H+ L KKVR LGLK ALSA+A ++V ED +
Sbjct: 74 HGNKKAPQFRGGGKAFGPIVRDHSHDLPKKVRALGLKHALSAKAMTDSIVVVEDAKAAEA 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KTK + +++ T L+ DG + LA++N+ +++VLP G+NVY IL+ +TLV
Sbjct: 134 KTKALKAQLSKLGLT-SALIIDGAEVDANFALASRNIPHLDVLPVQGINVYDILRANTLV 192
Query: 292 MSRDAVNKIVDRM 304
+++ AV+ + +R+
Sbjct: 193 LTKAAVSALEERL 205
>gi|317485821|ref|ZP_07944685.1| ribosomal protein L4/L1 family protein [Bilophila wadsworthia
3_1_6]
gi|345887472|ref|ZP_08838652.1| 50S ribosomal protein L4 [Bilophila sp. 4_1_30]
gi|316922927|gb|EFV44149.1| ribosomal protein L4/L1 family protein [Bilophila wadsworthia
3_1_6]
gi|345041781|gb|EGW45910.1| 50S ribosomal protein L4 [Bilophila sp. 4_1_30]
Length = 206
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 127/207 (61%), Gaps = 5/207 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+ V +++DK G + L +VF+V +R +I+H VVR QLA ++ GTHSTKT + VSG
Sbjct: 1 MAVVKVYDQDKTEQGELTLTPEVFEVAVRPEILHLVVRAQLAAKRAGTHSTKTRAMVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G KPWRQKGTGRAR G+ R P +RGG + GP+PR + K+NKK+R+L L++ALS+R A
Sbjct: 61 GVKPWRQKGTGRARAGSNRSPVWRGGAILFGPQPRKYDFKVNKKIRKLALRMALSSRLAG 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
LLV + ++P KTK + +K +++ L L+++NL + +
Sbjct: 121 DNLLVVKGFDLPEAKTKVFAKIAGNLGLSKALIIAPEES--RNLVLSSRNLPGITLTTPD 178
Query: 278 GLNVYSILQHDTLVMSRDAVNKIVDRM 304
L+VY IL+H LV+ AV + R+
Sbjct: 179 QLSVYEILKHKQLVLLEGAVEPVETRL 205
>gi|332798207|ref|YP_004459706.1| 50S ribosomal protein L4 [Tepidanaerobacter acetatoxydans Re1]
gi|438001126|ref|YP_007270869.1| LSU ribosomal protein L4p (L1e) [Tepidanaerobacter acetatoxydans
Re1]
gi|332695942|gb|AEE90399.1| ribosomal protein L4/L1e [Tepidanaerobacter acetatoxydans Re1]
gi|432177920|emb|CCP24893.1| LSU ribosomal protein L4p (L1e) [Tepidanaerobacter acetatoxydans
Re1]
Length = 208
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 122/199 (61%), Gaps = 4/199 (2%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN E G + L+ DVF V +R DI+HR V LA ++QGT +T T +EV+G
Sbjct: 1 MPKVTLFNIAGEQIGEIELSDDVFGVEVRPDIMHRAVVNYLANQRQGTANTLTRAEVAGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRARHG++R P +R G + GPKPRS + KK++RL LK ALSA+ E
Sbjct: 61 GRKPWRQKGTGRARHGSIRSPLWRKGGVIFGPKPRSFKSTMPKKLKRLALKSALSAKVVE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+L+V + L + + KTK +V+ + KK L+ E ++ + +NL V
Sbjct: 121 NELIVIDSLSMEAPKTKEMVSILKNLNADKKSLIVIAAK-DENVEKSARNLPSVKTTYVN 179
Query: 278 GLNVYSILQHDTLVMSRDA 296
LN Y IL HD L+M+++A
Sbjct: 180 TLNTYDILNHDNLIMTKEA 198
>gi|288554726|ref|YP_003426661.1| 50S ribosomal protein L4 [Bacillus pseudofirmus OF4]
gi|288545886|gb|ADC49769.1| 50S ribosomal protein L4 [Bacillus pseudofirmus OF4]
Length = 207
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 83/203 (40%), Positives = 127/203 (62%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNE---DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN+ G + L+ +F + + ++H V Q A +QGTH TK SEV G
Sbjct: 1 MPKVAVFNQAGSQVGDIELSDSIFGIEPNQSVLHDAVVMQQASLRQGTHKTKGRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+ GG + GP PRS++ KL KKVRRL +K ALS++
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWVGGGVVFGPTPRSYSYKLPKKVRRLAIKSALSSKLKA 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+++V ++L++ + KTK + N N + K L+ +E + L+T+NL V + +
Sbjct: 121 AEIVVLDNLQLDAPKTKDMANVLNGLSVDSKALVVTADY-NETVALSTRNLPGVTFVTAE 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
G+NV +L+HD LV+++DAV K+
Sbjct: 180 GVNVLDVLKHDKLVITKDAVAKV 202
>gi|402299395|ref|ZP_10819006.1| 50S ribosomal protein L4 [Bacillus alcalophilus ATCC 27647]
gi|401725433|gb|EJS98718.1| 50S ribosomal protein L4 [Bacillus alcalophilus ATCC 27647]
Length = 207
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 83/203 (40%), Positives = 124/203 (61%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN+ G + L +F + K ++H + Q A +QGTH TK SEV G
Sbjct: 1 MPKVALFNQSGSQVGDIELVESIFGLEPNKAVLHDAIVMQQASLRQGTHKTKGRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR GT+R PQ+ GG + GP PRS++ KL KKVRRL +K ALS++
Sbjct: 61 GRKPWRQKGTGRARQGTIRAPQWVGGGVVFGPTPRSYSYKLPKKVRRLAIKSALSSKVKA 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+++V EDL+ S KTK +VN + K L+ EK+ L+ +N+ V + +
Sbjct: 121 AEIVVLEDLKFDSIKTKDMVNVLAALSVDSKALVVTANY-DEKVALSARNIPGVTFVTAE 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
G+NV +++HD L+++++AV K+
Sbjct: 180 GVNVLDVIKHDKLIITKEAVEKV 202
>gi|319405897|emb|CBI79529.1| 50S ribosomal protein L4 [Bartonella sp. AR 15-3]
Length = 206
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 128/207 (61%), Gaps = 3/207 (1%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
DLV+ + ++ G + ++ ++F + R+DI+ RV+RWQLA+RQ+GTH ++ S+VS T
Sbjct: 2 DLVVKTLD--GKEAGKLKVSENIFGLTPREDILQRVIRWQLARRQKGTHPSQGRSDVSRT 59
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G K ++QKGTGRARH + R PQFRGG HGP R HA L KKVR LGL++ALS +
Sbjct: 60 GAKMFKQKGTGRARHSSARAPQFRGGGKAHGPVMRCHAHSLPKKVRALGLRLALSVKLKT 119
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
L+V + L + KTK + ++++ LL G + A N+ ++VLP
Sbjct: 120 DSLIVVDKLSIRDAKTKALNESFSKL-GFNNALLIGGKEVDMNFFRAASNIPNIDVLPVQ 178
Query: 278 GLNVYSILQHDTLVMSRDAVNKIVDRM 304
G+NVY IL+ LV+S++AV + +R
Sbjct: 179 GINVYDILRRGKLVLSKEAVETLEERF 205
>gi|56698635|ref|YP_169012.1| 50S ribosomal protein L4 [Ruegeria pomeroyi DSS-3]
gi|81558238|sp|Q5LLU7.1|RL4_SILPO RecName: Full=50S ribosomal protein L4
gi|56680372|gb|AAV97038.1| ribosomal protein L4 [Ruegeria pomeroyi DSS-3]
Length = 205
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 84/185 (45%), Positives = 115/185 (62%), Gaps = 2/185 (1%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
+F + R DI+HRVVRWQ Q GTH T SEVS + KK +RQKGTG ARHG+ + P
Sbjct: 22 LFGLEPRADILHRVVRWQRNNAQAGTHKVLTKSEVSYSTKKIYRQKGTGGARHGSRKSPT 81
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
FR G GP PRSH L KK R+LGL+ ALSA+A G+L+V E+ E KT +
Sbjct: 82 FRHGGVYKGPTPRSHGHDLTKKFRKLGLRHALSAKAKAGELVVIENAEAEG-KTAALAKQ 140
Query: 240 YNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNK 299
+ K+ L+ DG ++E A +N+ +++LPS+G NVY IL+ DTLV+++ AV
Sbjct: 141 VANL-GWKRALVIDGAAVNEGFARAARNIEGLDILPSMGANVYDILKRDTLVLTKAAVEA 199
Query: 300 IVDRM 304
+ R+
Sbjct: 200 LEARL 204
>gi|78043328|ref|YP_361117.1| 50S ribosomal protein L4 [Carboxydothermus hydrogenoformans Z-2901]
gi|109893583|sp|Q3A9R7.1|RL4_CARHZ RecName: Full=50S ribosomal protein L4
gi|77995443|gb|ABB14342.1| ribosomal protein L4 [Carboxydothermus hydrogenoformans Z-2901]
Length = 206
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 82/200 (41%), Positives = 122/200 (61%), Gaps = 1/200 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+PV N G + L ++F P+ K +++ V LA +++GTH TKT EVSG G+K
Sbjct: 4 VPVYNMEGAQVGEIELKDEIFGAPVNKAVLYEVSLMYLANQRRGTHDTKTRGEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRARHG++R P +R G + GP PR ++ + KKVRR LK ALS + E L
Sbjct: 64 PWRQKGTGRARHGSIRSPLWRKGGIVFGPHPRDYSYSVPKKVRRAALKSALSDKVNENNL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + L + KTK ++ N ++ K L+ G E ++ + +N+ V+V+ + LN
Sbjct: 124 IVVDSLTFAAPKTKEMIRVLNNLKVNGKTLIVTAGY-DEIVEKSARNIPGVSVMTAPSLN 182
Query: 281 VYSILQHDTLVMSRDAVNKI 300
S+L HD L+M+RDAV K+
Sbjct: 183 ALSLLNHDKLIMTRDAVLKV 202
>gi|254502843|ref|ZP_05114994.1| ribosomal protein L4/L1 family [Labrenzia alexandrii DFL-11]
gi|222438914|gb|EEE45593.1| ribosomal protein L4/L1 family [Labrenzia alexandrii DFL-11]
Length = 206
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 89/193 (46%), Positives = 125/193 (64%), Gaps = 1/193 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + ++ ++F + R D+IHRVVRWQLAKRQ GTH T SEV+G+ KK RQKG+G AR
Sbjct: 14 GSITVSDEIFGLDPRTDLIHRVVRWQLAKRQAGTHKTLGRSEVTGSTKKFVRQKGSGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG + PQFRGG GP R H L KKVR LGLK ALSA+A ++V ED +
Sbjct: 74 HGNKKAPQFRGGGRAFGPVVRDHGHDLPKKVRVLGLKHALSAKAKADSIVVVEDAKAAEA 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KTK + + N++ T L+ DG + LA++N+ +++VLP G+NVY IL+ +TLV
Sbjct: 134 KTKALKSQLNKLGLT-SALVIDGAEVDNNFALASRNIPHLDVLPVQGINVYDILRANTLV 192
Query: 292 MSRDAVNKIVDRM 304
+++ AV+ + +R
Sbjct: 193 LTKAAVSALEERF 205
>gi|335427953|ref|ZP_08554873.1| 50S ribosomal protein L4 [Haloplasma contractile SSD-17B]
gi|334893879|gb|EGM32088.1| 50S ribosomal protein L4 [Haloplasma contractile SSD-17B]
Length = 207
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 84/203 (41%), Positives = 126/203 (62%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN+ G + LA +VF + + +++ V Q A +QGTH TKT +EV G
Sbjct: 1 MPKVALFNQSGTQVGDIQLAEEVFGIEPNQQVLYDAVIMQRASLRQGTHKTKTRTEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ +LNKKVRRL L+ ALS + E
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYRLNKKVRRLALRSALSTKVNE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++V + L S KT+ +V + + +K L+ G + + L+ +N+ LP+
Sbjct: 121 DSVVVLDSLTFESPKTQEMVQVLKNLVSNEKTLIVTGEE-NVNVMLSARNIPNAITLPAS 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
+NV IL ++ LVM++DAV+KI
Sbjct: 180 KINVLDILNYNKLVMTQDAVSKI 202
>gi|121602068|ref|YP_988968.1| 50S ribosomal protein L4 [Bartonella bacilliformis KC583]
gi|121602137|ref|YP_988998.1| 50S ribosomal protein L4 [Bartonella bacilliformis KC583]
gi|421760771|ref|ZP_16197585.1| 50S ribosomal protein L4 [Bartonella bacilliformis INS]
gi|421760801|ref|ZP_16197615.1| 50S ribosomal protein L4 [Bartonella bacilliformis INS]
gi|120614245|gb|ABM44846.1| ribosomal protein L4 [Bartonella bacilliformis KC583]
gi|120614314|gb|ABM44915.1| ribosomal protein L4 [Bartonella bacilliformis KC583]
gi|411174539|gb|EKS44571.1| 50S ribosomal protein L4 [Bartonella bacilliformis INS]
gi|411174569|gb|EKS44601.1| 50S ribosomal protein L4 [Bartonella bacilliformis INS]
Length = 206
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 87/207 (42%), Positives = 125/207 (60%), Gaps = 3/207 (1%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
DL+I + + G + ++ VF + R+DI+ RVVRWQLA+RQ+GTH + S++S T
Sbjct: 2 DLIIKTLD--GKKTGELSVSEHVFGLVPREDILQRVVRWQLARRQKGTHKVQGRSDISRT 59
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G K ++QKGTGRARH + R PQFRGG HGP RSHA L KK R LGL++ALSA+
Sbjct: 60 GAKMYKQKGTGRARHSSARAPQFRGGGKAHGPVIRSHAHGLPKKSRALGLRLALSAKFKA 119
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
L+V ++ + KTK + ++++ LL G I A N+ ++VLP
Sbjct: 120 NDLIVIDEFNLQDPKTKVLATNFSKL-GFNNALLIGGKEIDVNFFRAASNIPNIDVLPIQ 178
Query: 278 GLNVYSILQHDTLVMSRDAVNKIVDRM 304
G+NVY IL+ LV+S+ AV + +R
Sbjct: 179 GINVYDILRRSKLVLSKKAVEALEERF 205
>gi|372278262|ref|ZP_09514298.1| 50S ribosomal protein L4 [Oceanicola sp. S124]
Length = 205
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 84/193 (43%), Positives = 118/193 (61%), Gaps = 2/193 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++F + R DI+HRVVRWQ K Q GTH T SEVS + KK +RQKGTG AR
Sbjct: 14 GSVDLGDEIFGLEPRADILHRVVRWQRNKAQAGTHKVLTKSEVSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG+ + P FR G GP PRSHA +L KK R+LGLK ALSA+ G L++ + E
Sbjct: 74 HGSRKAPIFRKGGIYKGPTPRSHAHELTKKFRKLGLKHALSAKVKSGSLVIIDTAE-SEG 132
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KT + + + K+ L+ DG ++E A N+ +++LP++G NVY IL+ DTLV
Sbjct: 133 KTAALAKMVSNL-GWKRALIIDGAAVNEGFARAAANIEGLDILPTMGANVYDILKRDTLV 191
Query: 292 MSRDAVNKIVDRM 304
+++ V + R+
Sbjct: 192 ITKAGVEALEARL 204
>gi|402813925|ref|ZP_10863519.1| 50S ribosomal protein L4 [Paenibacillus alvei DSM 29]
gi|402507772|gb|EJW18293.1| 50S ribosomal protein L4 [Paenibacillus alvei DSM 29]
Length = 207
Score = 156 bits (395), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 126/200 (63%), Gaps = 1/200 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + L+ VF + K ++H V QLA +QGTH K SEVSG G+K
Sbjct: 4 VAVYNMSGAQVGEIELSDSVFGIEPNKHVLHDAVVMQLASMRQGTHKVKNRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G++R PQ+ GG T+ GP PRS+A KL KKVRRL +K ALS++ ++
Sbjct: 64 PWKQKGTGRARQGSIRSPQWVGGGTVFGPTPRSYAYKLPKKVRRLAIKSALSSKVLAEQI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + L + + KTK N ++ +K L+ ++ + L+ +N+ V ++ + G+N
Sbjct: 124 IVIDSLALNTPKTKEFAAVLNNLKVDRKALVVLPEY-NDNVALSARNIPSVKLVAADGVN 182
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY +L+H+ L++++DAV K+
Sbjct: 183 VYDVLRHEKLIITKDAVQKV 202
>gi|89100348|ref|ZP_01173213.1| 50S ribosomal protein L4 [Bacillus sp. NRRL B-14911]
gi|89084969|gb|EAR64105.1| 50S ribosomal protein L4 [Bacillus sp. NRRL B-14911]
Length = 207
Score = 156 bits (395), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 121/200 (60%), Gaps = 1/200 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N G + L +F + ++ V Q A +QGTH TK SEV+G G+K
Sbjct: 4 VALLNQAGSQVGEIELNETIFGIEPNNHVLFEAVVMQRASLRQGTHKTKIRSEVAGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+RGG T+ GP PRS++ KL KKVRRL +K ALS++ AE +
Sbjct: 64 PWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYSYKLPKKVRRLAIKSALSSKVAEENI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
LV E+L + + KTK + KK L+ + E + L+ +N+ V V+ + G+N
Sbjct: 124 LVLENLALETPKTKDFKGVLTGLSVDKKALIVTAD-LDENVALSARNIPGVTVVTATGVN 182
Query: 281 VYSILQHDTLVMSRDAVNKI 300
V +L HD L+M++ AV K+
Sbjct: 183 VLDVLSHDKLIMTKAAVEKV 202
>gi|346991251|ref|ZP_08859323.1| 50S ribosomal protein L4 [Ruegeria sp. TW15]
Length = 205
Score = 156 bits (395), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 87/193 (45%), Positives = 118/193 (61%), Gaps = 2/193 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L D+F + R DI+HRVVRWQ Q GTH KT SE S + KK +RQKGTG AR
Sbjct: 14 GNIELDADLFGLEPRADILHRVVRWQRNNAQAGTHKVKTRSETSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG P FRGG GP RSH L KK R+LGL+ ALSA+A G+L+V E+ E
Sbjct: 74 HGDRNAPIFRGGGIYKGPVVRSHGHDLPKKFRKLGLRHALSAKAKAGELVVIENAEAEG- 132
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KT + + K+ L+ DG ++E A++N+ +++LPS+G NVY IL+ DTLV
Sbjct: 133 KTAALAKQVANL-GWKRALVIDGATVNEGFLKASKNIEGLDILPSMGANVYDILKRDTLV 191
Query: 292 MSRDAVNKIVDRM 304
+++ AV + R+
Sbjct: 192 LTKAAVEALEARL 204
>gi|328875550|gb|EGG23914.1| hypothetical protein DFA_06052 [Dictyostelium fasciculatum]
Length = 333
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 118/193 (61%), Gaps = 3/193 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L VF VP+R D++HR++RWQ AK +QGTH + + +V T KKP QKG GRAR
Sbjct: 121 GEINLLNSVFKVPLRIDLLHRMIRWQRAKARQGTHYAQNMGDVERTNKKPMAQKGNGRAR 180
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
GT Q GG PKPR H+ L KKVR+ L +ALS + A+GKL++ +DL+V +H
Sbjct: 181 QGTNHAIQMVGGARAFPPKPRDHSHSLQKKVRKQALCVALSTKLAQGKLIIVDDLQVETH 240
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KTK +V E + LL + LA N+ ++++P G+NVYSILQ DTLV
Sbjct: 241 KTKELVQLL--PEAWGRSLLVNNE-FSNNFNLAAYNIINIDLVPDRGINVYSILQKDTLV 297
Query: 292 MSRDAVNKIVDRM 304
+S+ ++ + R+
Sbjct: 298 ISKKSIEILQARL 310
>gi|254510767|ref|ZP_05122834.1| ribosomal protein, L4/L1 family [Rhodobacteraceae bacterium KLH11]
gi|221534478|gb|EEE37466.1| ribosomal protein, L4/L1 family [Rhodobacteraceae bacterium KLH11]
Length = 205
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 87/193 (45%), Positives = 118/193 (61%), Gaps = 2/193 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L D+F + R DI+HRVVRWQ Q GTH KT SE S + KK +RQKGTG AR
Sbjct: 14 GDIELNADLFGLEPRADILHRVVRWQRNNAQAGTHKVKTRSETSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG P FRGG GP RSH L KK R+LGL+ ALSA+A G+L+V E+ E
Sbjct: 74 HGDRNAPIFRGGGIYKGPVVRSHGHDLPKKFRKLGLRHALSAKAKAGELVVIENAEAEG- 132
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KT + + K+ L+ DG ++E A++N+ +++LPS+G NVY IL+ DTLV
Sbjct: 133 KTAALAKQVANL-GWKRALVIDGATVNEGFLKASKNIEGLDILPSMGANVYDILKRDTLV 191
Query: 292 MSRDAVNKIVDRM 304
+++ AV + R+
Sbjct: 192 LTKAAVEALEARL 204
>gi|389694571|ref|ZP_10182665.1| 50S ribosomal protein L4, bacterial/organelle [Microvirga sp.
WSM3557]
gi|388587957|gb|EIM28250.1| 50S ribosomal protein L4, bacterial/organelle [Microvirga sp.
WSM3557]
Length = 206
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 83/204 (40%), Positives = 123/204 (60%), Gaps = 1/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ +T + G + L +F + R D++ R VRWQLAKRQ GTH+ K S++ T KK
Sbjct: 3 LDITTLEGGNAGSVDLNETIFGLEPRADLLARCVRWQLAKRQAGTHAVKNRSDIDRTTKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTG ARHG PQFRGG GP+ RSHA L KKVR L LK ALS++A + L
Sbjct: 63 VYKQKGTGSARHGAASAPQFRGGGRAFGPQVRSHAHDLPKKVRALALKHALSSKAKDASL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V +D+++ KTK +V + ++ L+ G I + A +N+ ++VLP G+N
Sbjct: 123 VVIDDVKLAEPKTKALVERFGKL-GLGNALIIGGAEIETNFQRAARNIPNIDVLPVQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL+ + LV+++ AV+ + R
Sbjct: 182 VYDILRREKLVLTKSAVDALEARF 205
>gi|84503641|ref|ZP_01001679.1| 50S ribosomal protein L4 [Oceanicola batsensis HTCC2597]
gi|84387938|gb|EAQ00990.1| 50S ribosomal protein L4 [Oceanicola batsensis HTCC2597]
Length = 205
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 88/206 (42%), Positives = 117/206 (56%), Gaps = 2/206 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + V G + L ++F + R DI+HRVVRWQ QQGTH KT SE S +
Sbjct: 1 MKLDVIKLDGSSAGSVDLGDEIFGLEPRADILHRVVRWQRNNAQQGTHKVKTRSETSYST 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK +RQKGTG ARHG P FR G GP PRSH L KK R+LGLK ALSA+ EG
Sbjct: 61 KKIYRQKGTGGARHGDRNAPIFRKGGIYKGPVPRSHGHDLPKKFRKLGLKHALSAKVKEG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
L++ + E KT + + K+ L+ DG ++E A N+ ++VLPSVG
Sbjct: 121 SLVIIDAAESEG-KTNALAKQVKAL-GWKRALIIDGAAVNEGFAKAAANIDGLDVLPSVG 178
Query: 279 LNVYSILQHDTLVMSRDAVNKIVDRM 304
NVY IL+ DTLV+++ V + R+
Sbjct: 179 ANVYDILKRDTLVITKAGVEALEARL 204
>gi|395784124|ref|ZP_10463963.1| 50S ribosomal protein L4 [Bartonella melophagi K-2C]
gi|395423879|gb|EJF90067.1| 50S ribosomal protein L4 [Bartonella melophagi K-2C]
Length = 206
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/206 (41%), Positives = 124/206 (60%), Gaps = 3/206 (1%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
DLVI + + G + ++ +F + R+DI+ RVVRWQLA+RQQG H ++ S+V+ T
Sbjct: 2 DLVIKTLD--GNEAGKLKVSKHIFGLAPREDILQRVVRWQLARRQQGAHQSQGRSDVART 59
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G K ++QKGTGRARH + R PQFRGG H P RSH L KK R LGL +ALS +
Sbjct: 60 GAKMFKQKGTGRARHSSARAPQFRGGGKAHSPMARSHVHILPKKSRALGLCLALSVKLKT 119
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
L+V ++L V KTK + ++++ LL G I+ A N+ ++VLP
Sbjct: 120 NDLIVVDELNVQDAKTKVLAKSFSKL-GFNNALLIGGKEINMNFSRAASNIPNIDVLPVQ 178
Query: 278 GLNVYSILQHDTLVMSRDAVNKIVDR 303
G+NVY IL+ + LV+S+ AV + +R
Sbjct: 179 GINVYDILRRNKLVLSKAAVEALEER 204
>gi|83858565|ref|ZP_00952087.1| 50S ribosomal protein L4 [Oceanicaulis sp. HTCC2633]
gi|83853388|gb|EAP91240.1| 50S ribosomal protein L4 [Oceanicaulis sp. HTCC2633]
Length = 212
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 82/194 (42%), Positives = 121/194 (62%), Gaps = 2/194 (1%)
Query: 112 GFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRA 170
G + L+ VF + +R DI+ R V+WQL++RQ GTH TK E++ T KK RQKG G A
Sbjct: 14 GSIDLSDAVFGIEEVRADILQRAVKWQLSRRQAGTHKTKERGEIARTKKKFGRQKGGGGA 73
Query: 171 RHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPS 230
RHG+ P F GG HGP+ RSHA +L KKVR L LK ALS +A +L++ ++ +
Sbjct: 74 RHGSRNAPIFVGGGVAHGPRVRSHATELPKKVRALALKHALSTKAGAKQLVILDEARLDE 133
Query: 231 HKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTL 290
KTK + ++++ L+ DG + E A +N+ ++VLP+ GLNVY +L+ D L
Sbjct: 134 AKTKALTEKFSKL-GWSNALIIDGETLDENFARAARNIPLIDVLPAQGLNVYDVLRRDVL 192
Query: 291 VMSRDAVNKIVDRM 304
V+++ AV KI +R+
Sbjct: 193 VLTKAAVEKINERL 206
>gi|258406184|ref|YP_003198926.1| 50S ribosomal protein L4 [Desulfohalobium retbaense DSM 5692]
gi|257798411|gb|ACV69348.1| ribosomal protein L4/L1e [Desulfohalobium retbaense DSM 5692]
Length = 206
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 84/205 (40%), Positives = 128/205 (62%), Gaps = 2/205 (0%)
Query: 100 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
V+ + + N+ G + L+ +VF+ +R +I+H+VVR QLA +++GT KT S + G G+
Sbjct: 3 VVQIVDKSNQAVGEVTLSSEVFEREVRAEILHQVVRSQLAAKRRGTVGVKTRSLIRGGGR 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
KPWRQKGTGRAR GT+R P + GG +HGP+ R + IK+NKKV+RL LK+A+S+R AE
Sbjct: 63 KPWRQKGTGRARAGTVRSPIWTGGAIVHGPQARDYDIKVNKKVKRLALKMAMSSRLAEDN 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGL 279
L+V + + KTK Q+ + KK L+ L+L+ +N+ V V+ L
Sbjct: 123 LVVVDSVTPEEVKTKSFRKIQEQL-DLKKCLIVTAEK-DNTLELSARNIPGVTVMTWDNL 180
Query: 280 NVYSILQHDTLVMSRDAVNKIVDRM 304
N + +L HD LV+ AV KI +++
Sbjct: 181 NTFDVLNHDQLVLEAKAVEKIEEKL 205
>gi|159042833|ref|YP_001531627.1| 50S ribosomal protein L4 [Dinoroseobacter shibae DFL 12]
gi|189029501|sp|A8LM49.1|RL4_DINSH RecName: Full=50S ribosomal protein L4
gi|157910593|gb|ABV92026.1| 50S ribosomal protein L4/L1e [Dinoroseobacter shibae DFL 12]
Length = 205
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 90/204 (44%), Positives = 117/204 (57%), Gaps = 2/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V E G + L +F + R DI+HRVVRWQ K Q GTH KT SEVS + KK
Sbjct: 3 LDVIKLDGEAAGSVELDEALFGLEPRADILHRVVRWQRNKAQAGTHKVKTRSEVSYSTKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
+RQKGTG ARHG P FR G GP PRSHA L KK R+LGLK ALSA+A G+L
Sbjct: 63 IYRQKGTGGARHGARSAPIFRKGGIYKGPTPRSHAHDLPKKFRKLGLKHALSAKAKAGEL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V D+ KT + + K+ L+ DG + A N+ ++VLPS+G N
Sbjct: 123 VVI-DMATSEGKTATLAKQIKNL-GWKRALVIDGAQVDAGFAKAAANIDTLDVLPSMGAN 180
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL+ DTLV+++ V + R+
Sbjct: 181 VYDILKRDTLVLTKAGVEALEARL 204
>gi|410459931|ref|ZP_11313620.1| 50S ribosomal protein L4 [Bacillus azotoformans LMG 9581]
gi|409928042|gb|EKN65166.1| 50S ribosomal protein L4 [Bacillus azotoformans LMG 9581]
Length = 207
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 125/203 (61%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNE---DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N+ G + L+ VF + +++ + Q A R+QGTH K SEVSG
Sbjct: 1 MPKVALYNQAGSQVGEIELSDAVFGIEPNNNVLFDAIIMQRATRRQGTHKVKNRSEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ KL KKVRRL +K ALS +
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSFKLPKKVRRLAIKSALSTKVLG 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++V E+L + + KTK +V N + KKVL+ + ++L+ +N+ V V+ +
Sbjct: 121 NDVVVLENLTIEAPKTKDMVQVLNALSLNKKVLIVTADA-DQTIELSARNIPGVTVVDAN 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
G+NV ++ HD +V++++A K+
Sbjct: 180 GVNVLDVMNHDKMVITKEAAEKV 202
>gi|195386106|ref|XP_002051745.1| GJ17161 [Drosophila virilis]
gi|194148202|gb|EDW63900.1| GJ17161 [Drosophila virilis]
Length = 298
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 85/195 (43%), Positives = 115/195 (58%), Gaps = 2/195 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G M L DVF R DII + WQ R TKT +EV G G+KPW QKG GRAR
Sbjct: 83 GLMELHPDVFAAQPRVDIIQENIEWQRKYRYVSMAHTKTRAEVRGGGRKPWPQKGMGRAR 142
Query: 172 HGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPS 230
HG++R P F+GG +HGP+ P SH L R LGL LS + A+ L + E++E+P+
Sbjct: 143 HGSIRSPLFKGGGVVHGPRSPTSHFYMLPFYKRVLGLTSTLSVKLAQDDLHIIENVEIPT 202
Query: 231 HKTKFIVNYYNQMENTKKVLLCDGGCIH-EKLKLATQNLHYVNVLPSVGLNVYSILQHDT 289
+FI + + VL+ D I E + AT L YVN++P+ GLNVYS+L+HDT
Sbjct: 203 RDAQFIKDLIQERNWGPSVLIIDKQDIFPENICYATDTLGYVNLMPAFGLNVYSMLKHDT 262
Query: 290 LVMSRDAVNKIVDRM 304
LV++ DAV + +R+
Sbjct: 263 LVLTVDAVKHLEERL 277
>gi|66810850|ref|XP_639132.1| hypothetical protein DDB_G0283275 [Dictyostelium discoideum AX4]
gi|60467762|gb|EAL65778.1| hypothetical protein DDB_G0283275 [Dictyostelium discoideum AX4]
Length = 258
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/206 (42%), Positives = 129/206 (62%), Gaps = 5/206 (2%)
Query: 101 IPVTNFFNEDKGF--MVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+PV NF ++ + L+ DVF VP+R D++HR+VR+Q AK QQGTH + + T
Sbjct: 51 VPVLNFNDKLSPIENIQLSKDVFSVPLRVDLLHRMVRYQRAKSQQGTHQALNMGRMERTN 110
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KKP RQKG+G AR GT FRGG P RSHA L +KVR+L LK+ALS + A+
Sbjct: 111 KKPTRQKGSGNARKGTNHSVHFRGGARTFAPTMRSHAHDLPRKVRKLCLKVALSTKLAQN 170
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
KL+V + + SHKTK +++ + + + LL D I + L ++ N+ ++ LP +G
Sbjct: 171 KLVVVDGFNLESHKTKELLSKLPK--DWGRTLLVDSE-ISDFLNKSSLNVQKIDTLPQLG 227
Query: 279 LNVYSILQHDTLVMSRDAVNKIVDRM 304
LNVY+ILQ+DTLV+++ +V + R+
Sbjct: 228 LNVYTILQNDTLVLTKSSVEALQARL 253
>gi|255262953|ref|ZP_05342295.1| ribosomal protein, L4/L1 family [Thalassiobium sp. R2A62]
gi|255105288|gb|EET47962.1| ribosomal protein, L4/L1 family [Thalassiobium sp. R2A62]
Length = 206
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 81/185 (43%), Positives = 114/185 (61%), Gaps = 1/185 (0%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
+F + R DI+HRVVRWQ Q GTH KT SEV + KK +RQKGTG ARHG P
Sbjct: 22 IFGLEPRIDILHRVVRWQRNNAQAGTHKVKTRSEVKYSTKKIYRQKGTGGARHGARSAPI 81
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
FRGG GP RSH +L KK R+LGL+ ALSA+A G+L++ + ++ KT +
Sbjct: 82 FRGGGVYKGPTVRSHGHELTKKFRKLGLRHALSAKATAGELVIIDVADLKDAKTSALAKQ 141
Query: 240 YNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNK 299
+ K+ L+ DG ++E +A +N+ V++LPS+G NVY IL+ DTLV+++ V
Sbjct: 142 VKDL-GWKRALIIDGAEVNENFAVAARNIDTVDILPSMGANVYDILKSDTLVLTKAGVEA 200
Query: 300 IVDRM 304
+ R+
Sbjct: 201 LEARL 205
>gi|329850208|ref|ZP_08265053.1| 50S ribosomal protein L4 [Asticcacaulis biprosthecum C19]
gi|328840523|gb|EGF90094.1| 50S ribosomal protein L4 [Asticcacaulis biprosthecum C19]
Length = 210
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/194 (44%), Positives = 119/194 (61%), Gaps = 2/194 (1%)
Query: 112 GFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRA 170
G + L+ VF + IR DI+HRVV WQLAKR+ GTH +T +E S TGKK ++QKG+G A
Sbjct: 14 GSVELSDLVFGISDIRADILHRVVNWQLAKRRAGTHKVQTRNENSRTGKKMYKQKGSGGA 73
Query: 171 RHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPS 230
RHG+ R PQF GG+ GP RSHA L KKVR LGL+ ALS++ +G L+V + V S
Sbjct: 74 RHGSRRAPQFVGGSRAFGPVVRSHAFDLPKKVRALGLRHALSSKVKDGALIVLDQAVVAS 133
Query: 231 HKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTL 290
KT + + ++ L G + LA++N+ ++VLP+ GLNVY IL+ L
Sbjct: 134 PKTSALKASFEKL-GLNNALFITGAEVDTNFALASRNIPNIDVLPTAGLNVYDILRRHKL 192
Query: 291 VMSRDAVNKIVDRM 304
V++ AV I R
Sbjct: 193 VLTTAAVEAIEARF 206
>gi|344923959|ref|ZP_08777420.1| 50S ribosomal protein L4 [Candidatus Odyssella thessalonicensis
L13]
Length = 207
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 82/204 (40%), Positives = 124/204 (60%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I V N + G + L ++F + R DI+ RV+ WQLAKR+ G H TK + +V G+ +K
Sbjct: 3 IDVINIEAKKAGDIELNPEIFGLQPRVDILSRVIEWQLAKRRSGNHKTKEVGDVRGSTRK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
+RQKGTG ARHG+ R QFRGG + GP RSHA L KKVR+LGLKIALSA+ G+L
Sbjct: 63 IYRQKGTGNARHGSKRQVQFRGGCVVFGPVVRSHAYSLPKKVRKLGLKIALSAKTQAGEL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + +V + KTK ++ ++ +L+ + A NL +VLP G N
Sbjct: 123 IVVDSFKVATGKTKDLLKIITALQAPNALLIDAIANSDNPVVKAAANLEKFDVLPHNGAN 182
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY I++ + L+++++A+ + +R+
Sbjct: 183 VYDIMRKEKLIVTKEAIKALEERL 206
>gi|452972597|gb|EME72426.1| 50S ribosomal protein L4 [Bacillus sonorensis L12]
Length = 207
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 83/203 (40%), Positives = 123/203 (60%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N++ G + L VF + + ++ + Q A +QGTH K SEVSG
Sbjct: 1 MPKVALYNQNGSTAGEIELNDSVFGIEPNESVVFDAILMQRASLRQGTHKVKNRSEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS+A KL KKVRRL +K ALS++ +
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPKKVRRLAIKSALSSKVND 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
L+V EDL + + KTK + + KK L+ +E + L+ +NL V V+ +
Sbjct: 121 NNLIVLEDLTLDAVKTKEMAAVLKGLSIEKKALIVTADS-NETVALSARNLPGVTVVEAN 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
G+NV ++ H+ LVM++ AV K+
Sbjct: 180 GINVLDVVGHEKLVMTKAAVEKV 202
>gi|85703988|ref|ZP_01035091.1| 50S ribosomal protein L4 [Roseovarius sp. 217]
gi|85671308|gb|EAQ26166.1| 50S ribosomal protein L4 [Roseovarius sp. 217]
Length = 205
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/193 (45%), Positives = 117/193 (60%), Gaps = 2/193 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L D+F + R DI+HRVVRWQ K Q GTH KT SE S + KK +RQKGTG AR
Sbjct: 14 GSVDLGEDIFGLEPRADILHRVVRWQRNKAQAGTHKVKTRSETSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG P FR G GP PRSHA L KKVR LGLK ALSA+A G+L++ D+ +
Sbjct: 74 HGDKNAPIFRHGGIYKGPTPRSHAHDLPKKVRALGLKHALSAKAKAGELVII-DVASSNG 132
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KT + + K+ L+ DG ++ + A N+ ++VLPS+G NVY IL+ DTLV
Sbjct: 133 KTGELAKQVKNL-GWKRALVIDGAQVNAEFARAAANIEGLDVLPSMGANVYDILKRDTLV 191
Query: 292 MSRDAVNKIVDRM 304
+++ V + R+
Sbjct: 192 LTKAGVEALEARL 204
>gi|397905104|ref|ZP_10505976.1| LSU ribosomal protein L4p (L1e) [Caloramator australicus RC3]
gi|397161899|emb|CCJ33310.1| LSU ribosomal protein L4p (L1e) [Caloramator australicus RC3]
Length = 206
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 82/199 (41%), Positives = 124/199 (62%), Gaps = 5/199 (2%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + FN E G + L+ VF PI K+ +H+VV LA R+QGT S T +EVSG
Sbjct: 1 MPKVDLFNMNAEKVGEIELSDAVFGAPINKEAMHQVVVNILANRRQGTQSALTRAEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
GKKPWRQKGTGRARHG++R PQ+R G + PKPR ++ L KK++R+ LK ALS++ AE
Sbjct: 61 GKKPWRQKGTGRARHGSIRSPQWRHGGIVFAPKPRDYSYTLPKKLKRVALKSALSSKVAE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+++V + L + + KTK I + K +++ E + + +N+ +V+P
Sbjct: 121 NQIIVLDKLTLDAPKTKTIAEMLKKFNANKTLIVVKES--DEVIYKSVRNIENAHVIPVN 178
Query: 278 GLNVYSILQHDTLVMSRDA 296
LNVY IL++D ++++DA
Sbjct: 179 NLNVYDILKYDKFIVTQDA 197
>gi|297717844|gb|ADI50065.1| LSU ribosomal protein L4p [Candidatus Odyssella thessalonicensis
L13]
Length = 206
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 82/204 (40%), Positives = 124/204 (60%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I V N + G + L ++F + R DI+ RV+ WQLAKR+ G H TK + +V G+ +K
Sbjct: 3 IDVINIEAKKAGDIELNPEIFGLQPRVDILSRVIEWQLAKRRSGNHKTKEVGDVRGSTRK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
+RQKGTG ARHG+ R QFRGG + GP RSHA L KKVR+LGLKIALSA+ G+L
Sbjct: 63 IYRQKGTGNARHGSKRQVQFRGGCVVFGPVVRSHAYSLPKKVRKLGLKIALSAKTQAGEL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + +V + KTK ++ ++ +L+ + A NL +VLP G N
Sbjct: 123 IVVDSFKVATGKTKDLLKIITALQAPNALLIDAIANSDNPVVKAAANLEKFDVLPHNGAN 182
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY I++ + L+++++A+ + +R+
Sbjct: 183 VYDIMRKEKLIVTKEAIKALEERL 206
>gi|387928109|ref|ZP_10130787.1| 50S ribosomal protein L4 [Bacillus methanolicus PB1]
gi|387587695|gb|EIJ80017.1| 50S ribosomal protein L4 [Bacillus methanolicus PB1]
Length = 207
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/204 (43%), Positives = 126/204 (61%), Gaps = 6/204 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN++ G + L VF + K ++ V Q A +QGTH TK SEVSG
Sbjct: 1 MPKVALFNQNGSQVGEIELNDAVFGIEPNKHVLFEAVVMQRASLRQGTHKTKIRSEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG T+ GP PRS++ KL KKVRRL +K ALS++ E
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLE 120
Query: 218 GKLLVFEDLEVPSHKTK-FIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
+LV E+L + KTK F N NTK +++ + E + L+ +N+ V V+ +
Sbjct: 121 ENILVLENLAFETPKTKDFKGVLKNLSVNTKALVVT--ADLDENVALSARNIPGVTVVAA 178
Query: 277 VGLNVYSILQHDTLVMSRDAVNKI 300
G+NV +L HD L++++ AV K+
Sbjct: 179 NGINVLDVLNHDKLILTKAAVEKV 202
>gi|149203512|ref|ZP_01880482.1| 50S ribosomal protein L4 [Roseovarius sp. TM1035]
gi|149143345|gb|EDM31384.1| 50S ribosomal protein L4 [Roseovarius sp. TM1035]
Length = 205
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/193 (45%), Positives = 117/193 (60%), Gaps = 2/193 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L D+F + R DI+HRVVRWQ K Q GTH KT SE S + KK +RQKGTG AR
Sbjct: 14 GSVDLGEDIFGLEPRADILHRVVRWQRNKAQAGTHKVKTRSETSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG P FR G GP PRSHA L KKVR LGLK ALSA+A G L++ ++ +
Sbjct: 74 HGDKNAPIFRHGGIYKGPTPRSHAHDLPKKVRALGLKHALSAKAKAGALVILDEAS-SNG 132
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KT + + K+VL+ DG ++ + A N+ ++VLPS+G NVY IL+ DTLV
Sbjct: 133 KTGELAKQVKNL-GWKRVLVIDGAQVNAEFARAAANIEGLDVLPSMGANVYDILKRDTLV 191
Query: 292 MSRDAVNKIVDRM 304
+++ V + R+
Sbjct: 192 ITKAGVEALEARL 204
>gi|418057098|ref|ZP_12695146.1| ribosomal protein L4/L1e [Hyphomicrobium denitrificans 1NES1]
gi|353204799|gb|EHB70211.1| ribosomal protein L4/L1e [Hyphomicrobium denitrificans 1NES1]
Length = 205
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/201 (43%), Positives = 121/201 (60%), Gaps = 2/201 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
VTN G + LA ++F + +R D+IHR+VR+Q KR GTH + SEV+ TGKK
Sbjct: 5 VTNLDASKAGDIDLADEIFGLEVRNDLIHRMVRYQTLKRMAGTHHAQDRSEVAVTGKKMT 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
+QKGTG ARHG PQFRGG GPKPRSHAI+L KKVR L L+ ALS++A G+++V
Sbjct: 65 KQKGTGGARHGDKSAPQFRGGGKAFGPKPRSHAIELPKKVRALALRHALSSKAKAGEIVV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
D KT + + ++ + L+ DG + A +N+ ++VLP G+NVY
Sbjct: 125 I-DKATSEGKTGALKAQFAKL-SLDNALIIDGAELEPTFARAARNIPNIDVLPVQGINVY 182
Query: 283 SILQHDTLVMSRDAVNKIVDR 303
IL+ LV++R AV + R
Sbjct: 183 DILRRKKLVLTRAAVAALEAR 203
>gi|254463733|ref|ZP_05077144.1| ribosomal protein L4/L1 family [Rhodobacterales bacterium Y4I]
gi|206684641|gb|EDZ45123.1| ribosomal protein L4/L1 family [Rhodobacterales bacterium Y4I]
Length = 205
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/193 (43%), Positives = 118/193 (61%), Gaps = 2/193 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ D+F + R DI+HRVVRWQ QQGTH KT SE S + KK +RQKGTG AR
Sbjct: 14 GDIELSEDLFGLEPRADILHRVVRWQRNNAQQGTHKVKTRSETSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG P FR G GP RSH +L KK R+LGL+ ALSA+A G+L++ ED
Sbjct: 74 HGDRNAPIFRKGGIYKGPVVRSHGHELTKKFRKLGLRHALSAKAKAGELVIIEDAAAEG- 132
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KT + + K+ L+ DG ++E A++N+ +++LP++G NVY IL+ DTLV
Sbjct: 133 KTAALAKQVKNL-GWKRALIIDGASVNEGFLQASRNIEGLDILPTIGANVYDILKRDTLV 191
Query: 292 MSRDAVNKIVDRM 304
+++ V + R+
Sbjct: 192 ITKAGVEALEARL 204
>gi|16125498|ref|NP_420062.1| 50S ribosomal protein L4 [Caulobacter crescentus CB15]
gi|221234244|ref|YP_002516680.1| 50S ribosomal protein L4 [Caulobacter crescentus NA1000]
gi|46577288|sp|Q9A8V2.1|RL4_CAUCR RecName: Full=50S ribosomal protein L4
gi|254803724|sp|B8H4D5.1|RL4_CAUCN RecName: Full=50S ribosomal protein L4
gi|13422580|gb|AAK23230.1| ribosomal protein L4 [Caulobacter crescentus CB15]
gi|220963416|gb|ACL94772.1| LSU ribosomal protein L1E-L4P [Caulobacter crescentus NA1000]
Length = 212
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 82/180 (45%), Positives = 113/180 (62%), Gaps = 1/180 (0%)
Query: 125 IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGT 184
IR DI+ RVV WQLAKR+ G H + +EVS T KK ++QKGTG ARHG+ R QF GG
Sbjct: 28 IRGDILQRVVTWQLAKRRSGNHKIQVRNEVSRTSKKMYKQKGTGGARHGSRRAAQFVGGA 87
Query: 185 TMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQME 244
HGP RSHA L KK+R L L+ ALS++A G L+V + + + KT + ++++
Sbjct: 88 KAHGPVVRSHAFDLPKKIRALALRHALSSKAKAGSLVVVDSVALTEAKTAALRATFDKI- 146
Query: 245 NTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNKIVDRM 304
K L+ G + KLA +N+ V+VLP+ GLNVY +L+ TLV+++DAV I R
Sbjct: 147 GLKNALVIAGPEVDANFKLAARNIPNVDVLPNAGLNVYDVLRRQTLVLTKDAVEAISARF 206
>gi|325294397|ref|YP_004280911.1| 50S ribosomal protein L4 [Desulfurobacterium thermolithotrophum DSM
11699]
gi|325064845|gb|ADY72852.1| ribosomal protein L4/L1e [Desulfurobacterium thermolithotrophum DSM
11699]
Length = 208
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 82/208 (39%), Positives = 124/208 (59%), Gaps = 4/208 (1%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ I V N N++ G + + ++ + PI+K + V+WQLAKR++GTHSTKT EV G G
Sbjct: 1 MEIKVVNAANQEVGTVTIKDEIANAPIKKHAVWETVKWQLAKRRRGTHSTKTRGEVRGGG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KKPW QK TGRAR G++R PQ+ GG +HGPKPR + L KKVR++ L+ ++ R EG
Sbjct: 61 KKPWPQKHTGRARQGSIRAPQWVGGGVVHGPKPRDYYYPLPKKVRKVALRSVVAGRLQEG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQ--MENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
L+V ED KTK + + +EN K +++ + E + +NL V +L
Sbjct: 121 NLIVVEDFTFEKPKTKQAIEFLRNLGLENEKVLIVVPE--LEENTYKSFRNLPNVKLLEI 178
Query: 277 VGLNVYSILQHDTLVMSRDAVNKIVDRM 304
GLNVY +L +D + + + K+ +R+
Sbjct: 179 EGLNVYDMLCYDKCIFFKSTLPKLEERL 206
>gi|300022542|ref|YP_003755153.1| 50S ribosomal protein L4/L1e [Hyphomicrobium denitrificans ATCC
51888]
gi|299524363|gb|ADJ22832.1| ribosomal protein L4/L1e [Hyphomicrobium denitrificans ATCC 51888]
Length = 205
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 87/201 (43%), Positives = 121/201 (60%), Gaps = 2/201 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
VTN G + LA ++F + +R D+IHR+VR+Q KR GTH + SEV+ TGKK
Sbjct: 5 VTNLDASKAGDIDLADEIFGLEVRNDLIHRMVRYQTLKRMAGTHHAQDRSEVAVTGKKMT 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
+QKGTG ARHG PQFRGG GPKPRSHAI+L KKVR L L+ ALS++A G+++V
Sbjct: 65 KQKGTGGARHGDKSAPQFRGGGKAFGPKPRSHAIELPKKVRALALRHALSSKAKAGEIVV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
D KT + + ++ + L+ DG + A +N+ ++VLP G+NVY
Sbjct: 125 I-DKATSEGKTGALKAQFAKL-SLDNALIIDGAELEPTFARAARNIPNIDVLPVQGINVY 182
Query: 283 SILQHDTLVMSRDAVNKIVDR 303
IL+ LV++R AV + R
Sbjct: 183 DILRRRKLVLTRAAVAALEAR 203
>gi|291521897|emb|CBK80190.1| LSU ribosomal protein L4P [Coprococcus catus GD/7]
Length = 206
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 122/200 (61%), Gaps = 2/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + L VF V + ++++H+ V QLA +QGT S KT SEVSG G+K
Sbjct: 4 LSVYNIEGNQVGEIELNDAVFGVEVNENLMHKAVVAQLAASRQGTQSAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ GG + PKPR ++IKLNKK RRL +K AL+ + E KL
Sbjct: 64 PWRQKGTGHARQGSTRSPQWTGGGVVFAPKPRDYSIKLNKKERRLAIKSALTTKVNESKL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + E+ KTK V N ++ K +++ + ++ + + N+ V + +N
Sbjct: 124 IVLDSFELDEIKTKKFVAVMNNLKAEKALVVLNEK--NDNVIKSANNVPTVKTALTNTIN 181
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY IL++DTLV+++DAV I
Sbjct: 182 VYDILKYDTLVLTQDAVATI 201
>gi|194246734|ref|YP_002004373.1| 50S ribosomal protein L4 [Candidatus Phytoplasma mali]
gi|254803748|sp|B3QZZ2.1|RL4_PHYMT RecName: Full=50S ribosomal protein L4
gi|193807091|emb|CAP18529.1| 50S ribosomal protein L4 [Candidatus Phytoplasma mali]
Length = 207
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 125/201 (62%), Gaps = 4/201 (1%)
Query: 101 IPVTNFFNEDKGFMV---LAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P N N+ F+ L ++F + I K +++ VV Q A +QGTH+TK + VSG
Sbjct: 1 MPKYNLINQKGDFLSQIDLDDEIFGISINKQVLYDVVNAQRASMRQGTHATKNRALVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
GKKPWRQKGTGRARHGT+R P +RGG GP PR +++K+N+KVRRL LK+ALS +
Sbjct: 61 GKKPWRQKGTGRARHGTIRSPLWRGGGVAFGPSPRDYSVKVNQKVRRLALKMALSWKINN 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
L++ +++ + +HKTK N +Q+ +K L+ H L L+ +NL V +
Sbjct: 121 KNLILIDNINLETHKTKEFQNILDQLNIQQKTLILTKDLNHN-LCLSIRNLSKVLLETVS 179
Query: 278 GLNVYSILQHDTLVMSRDAVN 298
++VY +L + T++++++A N
Sbjct: 180 HVSVYQLLSYSTIILTKEAAN 200
>gi|365157325|ref|ZP_09353599.1| 50S ribosomal protein L4 [Bacillus smithii 7_3_47FAA]
gi|363625471|gb|EHL76510.1| 50S ribosomal protein L4 [Bacillus smithii 7_3_47FAA]
Length = 207
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 85/204 (41%), Positives = 125/204 (61%), Gaps = 6/204 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N+ G + L +F + + ++H V Q A +QGTH K SEVSG
Sbjct: 1 MPKVALYNQSGTKVGDIELNDSIFGITPNEHVLHEAVVMQRASLRQGTHKVKNRSEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG T+ GP PRS++ KL KKVRRL +K ALS++ E
Sbjct: 61 GRKPWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYSYKLPKKVRRLAIKSALSSKVNE 120
Query: 218 GKLLVFEDLEVPSHKTK-FIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
++V + L KTK F N +TK +++ DG +E + L+ +N+ V V+ +
Sbjct: 121 NNIVVVDTLNFDVPKTKEFTKVLKNLSVDTKALVVTDGS--NENVVLSARNIPGVTVIDT 178
Query: 277 VGLNVYSILQHDTLVMSRDAVNKI 300
G+NV +L HD L+M++ AV K+
Sbjct: 179 NGINVLDVLGHDKLIMTKSAVEKV 202
>gi|126739690|ref|ZP_01755382.1| 50S ribosomal protein L4 [Roseobacter sp. SK209-2-6]
gi|126719336|gb|EBA16046.1| 50S ribosomal protein L4 [Roseobacter sp. SK209-2-6]
Length = 205
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 84/193 (43%), Positives = 117/193 (60%), Gaps = 2/193 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ D+F + R DI+HR+VRWQ Q GTH KT SE S + KK +RQKGTG AR
Sbjct: 14 GDIELSEDLFGLEPRADILHRLVRWQRNNAQAGTHKVKTRSETSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG P FR G GP PRSH L KK R+LGL+ ALSA+A G+L+V ED
Sbjct: 74 HGDRNAPIFRKGGIYKGPTPRSHGHDLTKKFRKLGLRHALSAKAKAGELVVIED-AASEG 132
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KT + + K+ L+ DG ++E A++N+ +++LP++G NVY IL+ DTLV
Sbjct: 133 KTAALAKQVKDL-GWKRALVIDGASVNEDFLKASRNIEGLDILPTMGANVYDILKRDTLV 191
Query: 292 MSRDAVNKIVDRM 304
+++ V + R+
Sbjct: 192 ITKAGVEALEARL 204
>gi|299470351|emb|CBN78400.1| 50S ribosomal protein L4P [Ectocarpus siliculosus]
Length = 307
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 82/192 (42%), Positives = 115/192 (59%)
Query: 116 LAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTL 175
LA VF VP+R+D++H VVRWQLA+R++G TK I E+SG+G+K QKG G AR G
Sbjct: 116 LAPSVFGVPVRRDVVHEVVRWQLARRRKGNGQTKRIGEISGSGRKVRPQKGGGVARAGHS 175
Query: 176 RGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKF 235
R P +RGG HGP+ R + KLNKK RLGL++ALSAR EG+L V +DL+ KT
Sbjct: 176 RPPHWRGGAKAHGPRRRDFSFKLNKKFVRLGLRVALSARLREGQLKVVDDLKSDGFKTSA 235
Query: 236 IVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRD 295
++ V GG + + N+ VLP+ G NV+ I++ LV+++D
Sbjct: 236 MIKTIKARGIDGPVTFVVGGDPQVEFMRSVSNIMGAKVLPARGANVHDIIKRPNLVLTQD 295
Query: 296 AVNKIVDRMHTP 307
AV + + + TP
Sbjct: 296 AVTHLEEFLQTP 307
>gi|317575759|ref|NP_001187653.1| mitochondrial 39S ribosomal protein l4 [Ictalurus punctatus]
gi|308323607|gb|ADO28939.1| mitochondrial 39S ribosomal protein l4 [Ictalurus punctatus]
Length = 312
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 96/267 (35%), Positives = 147/267 (55%), Gaps = 27/267 (10%)
Query: 57 LASRKFSTTILTPDSSEGAFPSDLLLKKTVLTP-------------------DITIGLH- 96
+ +R ST +++ S E A PS+L L ++ D + H
Sbjct: 19 VCTRGISTRLISSLSGESALPSNLRLPANLIGAPRQKAAVPTGSELPVVRRCDADVPAHL 78
Query: 97 ---QDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISE 153
Q + + ++ +E G + L DVF VP+R DI+H V WQ ++ K+ +E
Sbjct: 79 APVQTWLHSLGSYESEPLGVVDLHPDVFSVPVRLDILHAVEVWQRNFKRISNAKVKSRAE 138
Query: 154 VSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALS 212
V G G KPW+QKG+GRARHG++R P +RGG HGP+ P S+ L KVR GLKIAL+
Sbjct: 139 VRGGGGKPWKQKGSGRARHGSIRSPIWRGGGVAHGPRGPTSYYYMLPMKVRVQGLKIALT 198
Query: 213 ARAAEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGG--CIHEKLKLATQNLHY 270
A+ A+ L V + LE+P+ ++ + VL+ D G H L+ AT NL
Sbjct: 199 AKLAQDYLHVIDTLEIPTPDPHYLEELLKHRQWGDSVLIVDVGEEFSHNVLQ-ATANLKT 257
Query: 271 VNVLPSVGLNVYSILQHDTLVMSRDAV 297
VN++P++GLNV+S+L+H++LV++ +AV
Sbjct: 258 VNIIPAIGLNVHSMLKHESLVLTLEAV 284
>gi|254487620|ref|ZP_05100825.1| ribosomal protein, L4/L1 family [Roseobacter sp. GAI101]
gi|214044489|gb|EEB85127.1| ribosomal protein, L4/L1 family [Roseobacter sp. GAI101]
Length = 205
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 84/193 (43%), Positives = 115/193 (59%), Gaps = 2/193 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +F + R DI+HRVVRWQ QQGTH KT SEVS + KK +RQKGTG AR
Sbjct: 14 GSIDLDEALFGLEPRADILHRVVRWQRNNAQQGTHKVKTRSEVSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG P FR G GP PRSH +L KK R+LGL+ ALS+ A G L++ +D
Sbjct: 74 HGARSAPIFRSGGIYKGPTPRSHGHELTKKFRKLGLRHALSSMAKNGNLVIIDD-ATSDG 132
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KT + + K+ L+ DG ++E A +N+ +++LPSVG NVY IL+ DTLV
Sbjct: 133 KTSALAKQVKSL-GWKRALIIDGASVNENFLQAARNIEGLDILPSVGANVYDILKRDTLV 191
Query: 292 MSRDAVNKIVDRM 304
+++ + + R+
Sbjct: 192 ITKAGIEALEARL 204
>gi|295694838|ref|YP_003588076.1| 50S ribosomal protein L4 [Kyrpidia tusciae DSM 2912]
gi|295410440|gb|ADG04932.1| ribosomal protein L4/L1e [Kyrpidia tusciae DSM 2912]
Length = 207
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 128/200 (64%), Gaps = 1/200 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N E G + L+ VF V ++ ++H+ V QLA +QGT +TK + V G G+K
Sbjct: 4 VAVYNAAGEQVGELELSEKVFGVDVKPAVLHQAVVAQLANARQGTRATKNRALVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+ GG T+ GP+PR +++L KK+RRL ++ ALS++ +EG L
Sbjct: 64 PWRQKGTGRARQGSIRAPQWVGGGTVFGPQPRDFSMRLPKKLRRLAIRGALSSKVSEGSL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + L++ + KTK ++ + ++ K L+ G +++ L+ +N+ V LP+ +N
Sbjct: 124 IVLDSLQIEAPKTKEMIRILSNLKVPGKALVVGEG-LNQPAHLSARNIPGVKYLPATDIN 182
Query: 281 VYSILQHDTLVMSRDAVNKI 300
V +L HD LV++ AV +I
Sbjct: 183 VVDLLHHDHLVVTTAAVKRI 202
>gi|357419487|ref|YP_004932479.1| 50S ribosomal protein L4 [Thermovirga lienii DSM 17291]
gi|355396953|gb|AER66382.1| LSU ribosomal protein L4P [Thermovirga lienii DSM 17291]
Length = 208
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 88/202 (43%), Positives = 120/202 (59%), Gaps = 5/202 (2%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N E G L+ VF P+ +H+VV QLA R+QGTHSTK+ EV G G+K
Sbjct: 4 VKVVNLKGEIVGEQQLSDAVFSAPVHVPAMHQVVVAQLANRRQGTHSTKSRGEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQK TGRARHG+ R P + GG HGP PR + K+NKKVRRL LK ALS + E KL
Sbjct: 64 PWRQKHTGRARHGSRRSPIWVGGGVAHGPVPRDYHQKVNKKVRRLALKSALSLKVMEDKL 123
Query: 221 LVFE--DLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
+V + D+E PS TK +V++ + KK L + K + N+ VL
Sbjct: 124 VVLDSFDMEKPS--TKAVVSFLESINGGKKPLFMVAQSSNAAYK-SVSNIPKAKVLHVDS 180
Query: 279 LNVYSILQHDTLVMSRDAVNKI 300
+NVY ++ HD L++++DAV ++
Sbjct: 181 INVYDLVHHDHLIITKDAVKRV 202
>gi|295688907|ref|YP_003592600.1| 50S ribosomal protein L4 [Caulobacter segnis ATCC 21756]
gi|295430810|gb|ADG09982.1| ribosomal protein L4/L1e [Caulobacter segnis ATCC 21756]
Length = 212
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 83/180 (46%), Positives = 112/180 (62%), Gaps = 1/180 (0%)
Query: 125 IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGT 184
IR DI+ RVV WQLAKR+ G H + +EVS T KK ++QKGTG ARHG+ R QF GG
Sbjct: 28 IRGDILQRVVTWQLAKRRSGNHKIQVRNEVSRTSKKMYKQKGTGGARHGSRRAAQFVGGA 87
Query: 185 TMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQME 244
HGP RSHA L KK+R L LK ALS++A G L+V + + KT + ++++
Sbjct: 88 KAHGPVVRSHAFDLPKKIRALALKHALSSKAKSGSLVVLDSAVLTDPKTAALRANFDKI- 146
Query: 245 NTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNKIVDRM 304
K L+ G + KLA +N+ V+VLP+ GLNVY +L+ TLV+++DAV I R
Sbjct: 147 GLKNALVIAGPEVDANFKLAARNIPNVDVLPNAGLNVYDVLRRQTLVLTKDAVEAISARF 206
>gi|407474712|ref|YP_006789112.1| 50S ribosomal protein L4 [Clostridium acidurici 9a]
gi|407051220|gb|AFS79265.1| 50S ribosomal protein L4 [Clostridium acidurici 9a]
Length = 213
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 124/200 (62%), Gaps = 1/200 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N E G + L +F V + + +++ VV+ QLA ++QGT S KT +EV G G+K
Sbjct: 10 VALYNVTGEQVGDIELNDSIFGVEVNQHVLYEVVKNQLANKRQGTQSVKTRAEVRGGGRK 69
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G+ R PQ+ GG + PKPR ++ K+ KKVRRL +K ALS++ A ++
Sbjct: 70 PWRQKGTGRARQGSTRAPQWVGGGVVFAPKPRDYSYKVPKKVRRLAMKSALSSKVANNEI 129
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V ++L + + KTK + + + + KKVL+ +K A N+ V LN
Sbjct: 130 IVLDELVLNAPKTKEMTSILKNINSAKKVLIVTADKDENVVKSAN-NIPGVETTLVSTLN 188
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY IL+HD+ ++++DAV K+
Sbjct: 189 VYDILKHDSFIITKDAVKKV 208
>gi|52078610|ref|YP_077401.1| 50S ribosomal protein L4 [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|319649115|ref|ZP_08003323.1| 50S ribosomal protein L4 [Bacillus sp. BT1B_CT2]
gi|404487480|ref|YP_006711586.1| 50S ribosomal protein L4 [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|423680509|ref|ZP_17655348.1| 50S ribosomal protein L4 [Bacillus licheniformis WX-02]
gi|81667231|sp|Q65PA6.1|RL4_BACLD RecName: Full=50S ribosomal protein L4
gi|52001821|gb|AAU21763.1| ribosomal protein L4 [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|52346474|gb|AAU39108.1| 50S ribosomal protein L4 [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|317388815|gb|EFV69634.1| 50S ribosomal protein L4 [Bacillus sp. BT1B_CT2]
gi|383441615|gb|EID49324.1| 50S ribosomal protein L4 [Bacillus licheniformis WX-02]
Length = 207
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 82/203 (40%), Positives = 123/203 (60%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N++ G + L VF + + ++ + Q A +QGTH K SEV G
Sbjct: 1 MPKVALYNQNGSTAGDIELNDSVFGIEPNESVVFDAILMQRASLRQGTHKVKNRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS+A KL KKVRRL +K ALS++ +
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPKKVRRLAIKSALSSKVND 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
L+V EDL + + KTK + + KK L+ +E ++L+ +NL V V+ +
Sbjct: 121 NNLIVLEDLNLDAVKTKEMAAILKGLSIEKKALIVTADA-NETVELSARNLPGVTVVEAN 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
G+NV ++ H+ LVM++ AV K+
Sbjct: 180 GINVLDVVGHEKLVMTKAAVEKV 202
>gi|403238407|ref|ZP_10916993.1| 50S ribosomal protein L4 [Bacillus sp. 10403023]
Length = 207
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 83/203 (40%), Positives = 127/203 (62%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNE---DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + +N+ G + L VF + + ++ V Q A +QGTH TK SEV+G
Sbjct: 1 MPKVSLYNQTGSSVGEIELNDSVFGIEPNQQVLFDAVIMQRASLRQGTHKTKIRSEVAGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG T+ GP PRS++ KL KKVRRL +K ALS + E
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYSYKLPKKVRRLAIKSALSTKVLE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+LV ++L + + KTK +V + +K L+ I+E ++L+ +N+ V V+ +
Sbjct: 121 ENILVLDNLVLETPKTKDMVAVLKGLNVDRKALIVTAD-INEAVELSARNIPGVTVVAAN 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
G++V +L HD LV+++ AV K+
Sbjct: 180 GVSVLDVLNHDKLVITKAAVEKV 202
>gi|452853998|ref|YP_007495682.1| 50S ribosomal protein L4 [Desulfovibrio piezophilus]
gi|451897652|emb|CCH50531.1| 50S ribosomal protein L4 [Desulfovibrio piezophilus]
Length = 206
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 81/204 (39%), Positives = 129/204 (63%), Gaps = 2/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I V + N G + L+ +VF+V I+ +I++ VVR Q A ++QGTH+TK + +G G+K
Sbjct: 4 IQVVDQNNTKVGDIELSPEVFEVEIQPEILNMVVRAQRAAKRQGTHATKNRALKTGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G+ R P +RGG T GP+PR ++ K+NKKVR+L L++ALS+R +E KL
Sbjct: 64 PWRQKGTGRARAGSSRSPLWRGGATTFGPQPRDYSFKVNKKVRKLALQMALSSRVSEAKL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
V +++ KTK +++ K +++ EKL ++ +N+ ++ V+ + LN
Sbjct: 124 TVVNTIDLTEIKTKAFAAVADKLGLGKTLIVAKDA--DEKLIMSARNMPHIKVIEADKLN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY +L + LVM A + +R+
Sbjct: 182 VYDVLLYPELVMLESAAQDVQERL 205
>gi|168334351|ref|ZP_02692538.1| ribosomal protein L4/L1e [Epulopiscium sp. 'N.t. morphotype B']
Length = 207
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 126/200 (63%), Gaps = 1/200 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N + G + L +F V I++ ++H+ V LA ++QGT TKT +EV G G+K
Sbjct: 4 VSVLNMEGKQVGEVSLDDGIFGVEIKEHLVHQAVVSYLANQRQGTQCTKTRAEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKG GRAR G++R PQ+ GG + PKPR ++ K+N+K R+ LK AL++R E K+
Sbjct: 64 PWRQKGGGRARQGSIRSPQWTGGGVVFAPKPRDYSFKVNRKERQQALKCALTSRVQEKKI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V ++L++ KTK +V + + K +++ +G C +K+A N+ V +N
Sbjct: 124 VVLDELKLTEAKTKSMVKVLDALNLKKALVVTEGDCAMN-VKIAAGNIQGVKTSAVNNIN 182
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY +L++DT V++++A++KI
Sbjct: 183 VYDVLKYDTFVVTKEALSKI 202
>gi|167748431|ref|ZP_02420558.1| hypothetical protein ANACAC_03175 [Anaerostipes caccae DSM 14662]
gi|317472036|ref|ZP_07931368.1| ribosomal protein L4/L1 family protein [Anaerostipes sp. 3_2_56FAA]
gi|167652423|gb|EDR96552.1| 50S ribosomal protein L4 [Anaerostipes caccae DSM 14662]
gi|316900440|gb|EFV22422.1| ribosomal protein L4/L1 family protein [Anaerostipes sp. 3_2_56FAA]
Length = 206
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 85/200 (42%), Positives = 122/200 (61%), Gaps = 2/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N + + L +F V I + ++H V QLA +QGT S KT SEV G G+K
Sbjct: 4 VSVLNMEGNEVEKLNLNDGIFGVEINEHLVHLAVVSQLANNRQGTQSAKTRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G++R PQ+ GG + PKPR ++ KLNKK RRL LK AL++R E K
Sbjct: 64 PWRQKGTGHARQGSIRAPQWTGGGVVFAPKPREYSKKLNKKERRLALKSALTSRVNENKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V ++ + KTK + N N + N KK L+ G ++ L L+ +N+ V + +N
Sbjct: 124 IVVDEFKFDDVKTKNVANMLNNL-NVKKALVIMGDK-NDNLILSARNIPGVKTALTSTIN 181
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY IL++DT+V+S++AV I
Sbjct: 182 VYDILKYDTVVVSKEAVANI 201
>gi|22478084|gb|AAH37064.1| Mrpl4 protein, partial [Mus musculus]
Length = 306
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 136/244 (55%), Gaps = 9/244 (3%)
Query: 66 ILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLAGDVFDVPI 125
I P S G D +L+K L + Q V + F E G L DVF
Sbjct: 46 ISEPRDSAGLL--DPVLRKCELRIPVHRRPVQAWVESLRGFEQERIGLAELHPDVFATAP 103
Query: 126 RKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGTT 185
R DI+H+V WQ R+ +TKT +EVSG G+KPW+QKG+GRARHG++R P +RGG
Sbjct: 104 RLDIVHQVAIWQRNFRRISYANTKTRAEVSGGGRKPWQQKGSGRARHGSIRSPLWRGGGV 163
Query: 186 MHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQME 244
HGP+ P S+ L KVR LGLK+AL+ + + L + + LE+P+ +++
Sbjct: 164 AHGPRGPTSYYYMLPMKVRALGLKVALTVKLMQDDLHIVDSLELPTADPQYLTELAQYRH 223
Query: 245 NTKKVLLCDGGCIHEKLK----LATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNKI 300
VLL D HE++ AT L+ N++P+VGLNVYS+L+H TLV++ +V +
Sbjct: 224 WGSSVLLVD--LTHEEMPKNVVAATSGLNSFNLIPAVGLNVYSMLKHQTLVLTLPSVAFL 281
Query: 301 VDRM 304
D++
Sbjct: 282 EDKL 285
>gi|260886877|ref|ZP_05898140.1| ribosomal protein L4/L1 family protein [Selenomonas sputigena ATCC
35185]
gi|330839325|ref|YP_004413905.1| ribosomal protein L4/L1e [Selenomonas sputigena ATCC 35185]
gi|402832964|ref|ZP_10881587.1| 50S ribosomal protein L4 [Selenomonas sp. CM52]
gi|260863476|gb|EEX77976.1| ribosomal protein L4/L1 family protein [Selenomonas sputigena ATCC
35185]
gi|329747089|gb|AEC00446.1| ribosomal protein L4/L1e [Selenomonas sputigena ATCC 35185]
gi|402281707|gb|EJU30333.1| 50S ribosomal protein L4 [Selenomonas sp. CM52]
Length = 207
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 122/200 (61%), Gaps = 1/200 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N N+ G + L VF V + ++H+ V QLA R+ GTH+TKT V G G+K
Sbjct: 4 VAVYNSANQQVGDIELNDSVFGVEMNAGLVHQAVVMQLASRRLGTHATKTRGLVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G+ R P + GG T+ GP+PRS+A ++ KK RRL +K ALS + A G
Sbjct: 64 PWRQKGTGRARSGSTRSPLWVGGGTVFGPQPRSYAFRMPKKQRRLAIKCALSDKVASGDF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V +DL+ + KTK +V K L+ +E ++L+++N+ V + ++GLN
Sbjct: 124 IVLDDLQFDAPKTKSVVKMLGDFGVDAKSLIITLDE-NENVELSSRNIPGVKAINTMGLN 182
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY IL H L +++ A+ KI
Sbjct: 183 VYDILNHTKLFITKAAIEKI 202
>gi|119508437|ref|NP_075656.2| 39S ribosomal protein L4, mitochondrial [Mus musculus]
gi|81881827|sp|Q9DCU6.1|RM04_MOUSE RecName: Full=39S ribosomal protein L4, mitochondrial; Short=L4mt;
Short=MRP-L4
gi|12832465|dbj|BAB22118.1| unnamed protein product [Mus musculus]
gi|13559359|dbj|BAB40839.1| mitochondrial ribosomal protein L4 (L4mt) [Mus musculus]
gi|37572295|gb|AAH39983.2| Mitochondrial ribosomal protein L4 [Mus musculus]
gi|38511681|gb|AAH61095.1| Mitochondrial ribosomal protein L4 [Mus musculus]
gi|148693202|gb|EDL25149.1| mitochondrial ribosomal protein L4, isoform CRA_c [Mus musculus]
Length = 294
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 136/244 (55%), Gaps = 9/244 (3%)
Query: 66 ILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLAGDVFDVPI 125
I P S G D +L+K L + Q V + F E G L DVF
Sbjct: 34 ISEPRDSAGLL--DPVLRKCELRIPVHRRPVQAWVESLRGFEQERIGLAELHPDVFATAP 91
Query: 126 RKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGTT 185
R DI+H+V WQ R+ +TKT +EVSG G+KPW+QKG+GRARHG++R P +RGG
Sbjct: 92 RLDIVHQVAIWQRNFRRISYANTKTRAEVSGGGRKPWQQKGSGRARHGSIRSPLWRGGGV 151
Query: 186 MHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQME 244
HGP+ P S+ L KVR LGLK+AL+ + + L + + LE+P+ +++
Sbjct: 152 AHGPRGPTSYYYMLPMKVRALGLKVALTVKLMQDDLHIVDSLELPTADPQYLTELAQYRH 211
Query: 245 NTKKVLLCDGGCIHEKLK----LATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNKI 300
VLL D HE++ AT L+ N++P+VGLNVYS+L+H TLV++ +V +
Sbjct: 212 WGSSVLLVD--LTHEEMPKNVVAATSGLNSFNLIPAVGLNVYSMLKHQTLVLTLPSVAFL 269
Query: 301 VDRM 304
D++
Sbjct: 270 EDKL 273
>gi|121534760|ref|ZP_01666581.1| ribosomal protein L4/L1e [Thermosinus carboxydivorans Nor1]
gi|121306780|gb|EAX47701.1| ribosomal protein L4/L1e [Thermosinus carboxydivorans Nor1]
Length = 208
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 120/200 (60%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + G + L+ VF V + K ++H+ V QLA ++ GTH+TKT V G GKK
Sbjct: 4 VAVYDITGAQTGEIELSDSVFGVEVNKAVLHQAVVMQLANQRLGTHATKTRGMVRGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R P + GG T+ GP+PRS+AI + +K RRL LK ALSA+ G++
Sbjct: 64 PWRQKGTGRARAGSIRSPLWVGGGTVFGPQPRSYAISMPRKARRLALKSALSAKVQSGEM 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V ED KTK +V + ++ L E + + +N+ V + S G+N
Sbjct: 124 VVLEDFTFAEPKTKNVVKMLDNLKVADDKALIILSEADENVIKSARNIPGVKAIASTGIN 183
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY +L HD +++++ AV +I
Sbjct: 184 VYDLLYHDKVLVTKGAVARI 203
>gi|254438218|ref|ZP_05051712.1| ribosomal protein L4/L1 family [Octadecabacter antarcticus 307]
gi|198253664|gb|EDY77978.1| ribosomal protein L4/L1 family [Octadecabacter antarcticus 307]
Length = 205
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 117/193 (60%), Gaps = 2/193 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +F + R DI+HRVVRWQ Q GTH KT SEV + KK +RQKGTG AR
Sbjct: 14 GSVELDEAIFGLEPRIDILHRVVRWQRNNAQAGTHKVKTRSEVKYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG P FRGG GP PRSH +L KK R+LGL+ ALSA+ A G+L++ +++++
Sbjct: 74 HGARSAPIFRGGGIYKGPTPRSHGHELTKKFRKLGLRHALSAKVAAGELVIVDNIDIKDA 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KT + + K+ L+ D ++E +A +N+ +N LP +G NVY IL+ DTLV
Sbjct: 134 KTSALAKTVGAL-GWKRCLIID-ATVNEDFAVAARNITSINALPVMGANVYDILRSDTLV 191
Query: 292 MSRDAVNKIVDRM 304
+++ V + R+
Sbjct: 192 LTKAGVEALEARL 204
>gi|167645579|ref|YP_001683242.1| 50S ribosomal protein L4 [Caulobacter sp. K31]
gi|189029494|sp|B0T2C3.1|RL4_CAUSK RecName: Full=50S ribosomal protein L4
gi|167348009|gb|ABZ70744.1| ribosomal protein L4/L1e [Caulobacter sp. K31]
Length = 212
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 85/205 (41%), Positives = 122/205 (59%), Gaps = 2/205 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
+ V N G + L +F + IR DI+ RVV WQLAKR+ G H + +EVS TGK
Sbjct: 3 LDVINLDGGKAGSVDLDDAIFGIADIRGDILQRVVTWQLAKRRSGNHKIQVRNEVSRTGK 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
K ++QKGTG ARHG+ R QF GG HGP RSHA L KK+R + L+ ALS++A G
Sbjct: 63 KMYKQKGTGSARHGSRRAAQFVGGAKAHGPVVRSHAFDLPKKIRAMALRHALSSKAKSGS 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGL 279
++V + + KT + ++++ K L+ G + KLA +N+ ++VLP+ GL
Sbjct: 123 IIVLDTAVLTDPKTAALRANFDKI-GLKNALVIAGPEVDGNFKLAARNIPNIDVLPNAGL 181
Query: 280 NVYSILQHDTLVMSRDAVNKIVDRM 304
NVY +L+ TLV+++DAV I R
Sbjct: 182 NVYDVLRRHTLVLTKDAVEAISARF 206
>gi|402820854|ref|ZP_10870417.1| rplD protein [alpha proteobacterium IMCC14465]
gi|402510357|gb|EJW20623.1| rplD protein [alpha proteobacterium IMCC14465]
Length = 206
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 85/201 (42%), Positives = 118/201 (58%), Gaps = 1/201 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
VT G + L VF + +R D++HR+V +QLA RQ GTH TK SE+ GT KK
Sbjct: 5 VTTLEATKSGSVDLNDSVFGLELRADLLHRMVNYQLASRQAGTHKTKNRSEIVGTTKKFG 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQKG G ARHG + F GG HGP RSHA KL KKVR L LK ALS++ +L+V
Sbjct: 65 RQKGGGGARHGNRKSNIFIGGGRAHGPVVRSHATKLPKKVRTLALKTALSSKVKAAQLIV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
+ E KT + N ++ T L+ DG ++E A +N+ ++VLP G+NVY
Sbjct: 125 LDKAESKDGKTSVLRNQLTKLGIT-SALIIDGNNVNENFARAARNIEKIDVLPVQGINVY 183
Query: 283 SILQHDTLVMSRDAVNKIVDR 303
IL+ D LV+++ A++ + +R
Sbjct: 184 DILRRDHLVLTKAAIDSLEER 204
>gi|254460398|ref|ZP_05073814.1| ribosomal protein L4/L1 family [Rhodobacterales bacterium HTCC2083]
gi|206676987|gb|EDZ41474.1| ribosomal protein L4/L1 family [Rhodobacteraceae bacterium
HTCC2083]
Length = 205
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 84/185 (45%), Positives = 113/185 (61%), Gaps = 2/185 (1%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
+F + R DI+HRVVRWQ Q GTH KT SEV + KK +RQKGTG ARHG P
Sbjct: 22 LFGLEPRADILHRVVRWQRNNAQAGTHKVKTRSEVKYSTKKIYRQKGTGGARHGARSAPI 81
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
FRGG GP RSH L KKVR LGLK+ALSA+A G+L+V D + KT +
Sbjct: 82 FRGGGIYKGPVVRSHGHDLPKKVRALGLKLALSAKAKAGELVVI-DEAAGAMKTSALAKQ 140
Query: 240 YNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNK 299
+ M K+ L+ DG ++E A +N+ +++LPS+G NVY IL+ DTLV+++ +
Sbjct: 141 VSAM-GWKRALIIDGASVNEDFMQAARNIEGLDILPSMGANVYDILKRDTLVITKAGIEA 199
Query: 300 IVDRM 304
+ R+
Sbjct: 200 LEARL 204
>gi|298531084|ref|ZP_07018485.1| ribosomal protein L4/L1e [Desulfonatronospira thiodismutans ASO3-1]
gi|298509107|gb|EFI33012.1| ribosomal protein L4/L1e [Desulfonatronospira thiodismutans ASO3-1]
Length = 206
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 81/197 (41%), Positives = 125/197 (63%), Gaps = 2/197 (1%)
Query: 108 NEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGT 167
N++ G + L +VF V ++ +++H+ VR A + GT K + +SG G+KPWRQKGT
Sbjct: 11 NQEVGEIDLQENVFSVSVKPELMHQAVRAHRAAVRSGTVGVKNRALISGGGRKPWRQKGT 70
Query: 168 GRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLE 227
GRAR GT R P +RGG +HGPK R ++IKLNKKVRRL LK+ALS + A+ KL + ++L+
Sbjct: 71 GRARAGTGRSPLWRGGAVIHGPKARDYSIKLNKKVRRLALKMALSTKYAQDKLQILDNLD 130
Query: 228 VPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQH 287
+ +TK V+ N + K +++ L+L+ +N+ V V+ +NVY +L+H
Sbjct: 131 LSRIRTKDFVSIKNNLGLKKPLIVTAEKS--NNLELSARNVPGVEVITQDSINVYEVLKH 188
Query: 288 DTLVMSRDAVNKIVDRM 304
LVM + AV K+ +R+
Sbjct: 189 QELVMDKQAVEKLQERL 205
>gi|404492292|ref|YP_006716398.1| 50S ribosomal protein L4 [Pelobacter carbinolicus DSM 2380]
gi|109893615|sp|Q3A6P6.1|RL4_PELCD RecName: Full=50S ribosomal protein L4
gi|77544399|gb|ABA87961.1| ribosomal protein L4 [Pelobacter carbinolicus DSM 2380]
Length = 206
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 119/185 (64%), Gaps = 2/185 (1%)
Query: 116 LAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTL 175
L+ +VF+ +++ +IH +VR+QLA R+QGT + K S V+G GKKP+RQKGTG AR GT+
Sbjct: 19 LSDEVFNAEVKEYLIHDMVRYQLAARRQGTSAAKNRSAVAGGGKKPYRQKGTGNARQGTI 78
Query: 176 RGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKF 235
R P F GG GP PR + KLN+KV++ L+ ALSAR E ++ V D ++ TK
Sbjct: 79 RAPHFVGGGAAFGPSPRDFSFKLNRKVKKAALRSALSARFKEERVAVLNDFQLEKIGTKA 138
Query: 236 IVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRD 295
+V N+ E + +++ G + L+L+ +NL +V VL + G+NVY ++ H LV++
Sbjct: 139 VVEVLNRFELSNVLVVV--GEDNRNLELSARNLPHVKVLKAEGVNVYDLMNHRNLVVTEG 196
Query: 296 AVNKI 300
AV ++
Sbjct: 197 AVEQL 201
>gi|94987403|ref|YP_595336.1| 50S ribosomal protein L4 [Lawsonia intracellularis PHE/MN1-00]
gi|442556248|ref|YP_007366073.1| 50S ribosomal protein L4 [Lawsonia intracellularis N343]
gi|166234679|sp|Q1MPR2.1|RL4_LAWIP RecName: Full=50S ribosomal protein L4
gi|94731652|emb|CAJ55015.1| ribosomal protein L4 [Lawsonia intracellularis PHE/MN1-00]
gi|441493695|gb|AGC50389.1| 50S ribosomal protein L4 [Lawsonia intracellularis N343]
Length = 206
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 86/205 (41%), Positives = 127/205 (61%), Gaps = 2/205 (0%)
Query: 100 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
++ V N E+ G + L+ +F+V ++ +I+H VVR QLA ++ GTHS KT VSG G
Sbjct: 3 IVTVYNQQKEETGKINLSSKIFEVQVQPEILHLVVRAQLAAKRAGTHSVKTRGHVSGGGA 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
KPWRQKGTGRAR G+ R P +RGG + GP+PR ++ K+NKK+R L L +ALS+R AE
Sbjct: 63 KPWRQKGTGRARAGSNRSPLWRGGGIVFGPQPRDYSFKVNKKIRSLALCMALSSRFAEEN 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGL 279
L+V +++ +P KTK V N + K +++ +L L+ +N+ V +L L
Sbjct: 123 LIVIDNIVLPEIKTKHFVGVANILGLHKALIVAP--VESTQLLLSMRNVPNVKLLTYDRL 180
Query: 280 NVYSILQHDTLVMSRDAVNKIVDRM 304
NVY IL++ LV+ AV I R+
Sbjct: 181 NVYDILKYKQLVLLEGAVQHIEARL 205
>gi|255282606|ref|ZP_05347161.1| ribosomal protein L4/L1 family protein [Bryantella formatexigens
DSM 14469]
gi|255266899|gb|EET60104.1| 50S ribosomal protein L4 [Marvinbryantia formatexigens DSM 14469]
Length = 206
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 123/200 (61%), Gaps = 2/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G M L+ VF V I + ++H V QLA +QGT KT SEVSG G+K
Sbjct: 4 VSVYNMEGKEVGTMELSDAVFGVEINEHLVHMAVLSQLANNRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ++GG + P PR ++ K+NKK +R LK AL++R E KL
Sbjct: 64 PWRQKGTGHARQGSTRAPQWKGGGVVFAPVPRDYSFKMNKKEKRAALKSALTSRVQENKL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V ++L++ + KTK +VN + K +++ + E + ++ +N+ V + +N
Sbjct: 124 VVLDELKLDAIKTKSMVNVLKNVNAEKALVVLNEN--DENVVMSARNIAGVKTALTNTIN 181
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY IL+++TLVM++ A I
Sbjct: 182 VYDILKYNTLVMTKAAAEAI 201
>gi|410929341|ref|XP_003978058.1| PREDICTED: 39S ribosomal protein L4, mitochondrial-like [Takifugu
rubripes]
Length = 302
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 95/271 (35%), Positives = 147/271 (54%), Gaps = 30/271 (11%)
Query: 60 RKFSTTILTPDSSEGAFPSDLLLKKTVLTP--------------------DITIGLH--- 96
++F++T+ + E A P++LLL ++ P D I H
Sbjct: 15 QRFASTL----AGESALPTNLLLPTNLVDPARLKRPSPPADCPLPVLRKCDAAIPAHLSH 70
Query: 97 -QDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVS 155
Q V + +E G L DVF VP R DI+H V WQ ++ TK SEV
Sbjct: 71 IQTWVETLEKEDSEPLGLAHLHPDVFAVPPRLDILHMVEIWQRNFKRISHAHTKVRSEVR 130
Query: 156 GTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSAR 214
G GKKPWRQKG+GRARHG++R P +RGG HGP+ P S+ L KVR GLK+ALS++
Sbjct: 131 GGGKKPWRQKGSGRARHGSIRSPLWRGGGVSHGPRGPTSYYYMLPMKVRVQGLKVALSSK 190
Query: 215 AAEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCD-GGCIHEKLKLATQNLHYVNV 273
++ L V + L +P+ +++ + + VL+ D E + AT NL VN+
Sbjct: 191 MSQSYLHVVDSLAIPTPDPQYLRDLIGHRHWGQSVLIVDVSEEFPENILQATANLKTVNI 250
Query: 274 LPSVGLNVYSILQHDTLVMSRDAVNKIVDRM 304
+P++GLNV+S+L+H+ +V++ +A+ + D++
Sbjct: 251 IPAIGLNVHSLLKHEAIVLTLEAIKFLEDKL 281
>gi|398813175|ref|ZP_10571877.1| 50S ribosomal protein L4, bacterial/organelle [Brevibacillus sp.
BC25]
gi|398039336|gb|EJL32474.1| 50S ribosomal protein L4, bacterial/organelle [Brevibacillus sp.
BC25]
Length = 207
Score = 153 bits (387), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 124/203 (61%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N+ G + LA VF + +++ + Q A ++QGTH K SEV G
Sbjct: 1 MPKVALYNQSGSQVGEIDLADSVFGIEPNSAVLYDAIVMQQASQRQGTHDVKNRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ++GG + GP PR + KLN+KVRRL LK ALSA+
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWKGGGVVFGPTPRKYGYKLNRKVRRLALKSALSAKVQS 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++LV E L + + KTK + N ++ +KVL+ + + LA++N+ ++ +
Sbjct: 121 NEILVLEALNIAAPKTKEMTVVLNNLKADRKVLIVTSEY-DQNVALASRNIPGAKIVDAA 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
G+NV ++ HD ++++++A+ K+
Sbjct: 180 GINVLDLVAHDKVIVTKEAIAKV 202
>gi|403382869|ref|ZP_10924926.1| 50S ribosomal protein L4 [Paenibacillus sp. JC66]
Length = 207
Score = 153 bits (387), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 122/200 (61%), Gaps = 1/200 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N E G + L+ VF + K ++H V Q A +QGTH K SEV G G+K
Sbjct: 4 VALYNISGEQVGELELSEAVFGIEPNKHVLHDAVVMQQASLRQGTHKVKGRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G++R PQ++GG + GP PRS+A KL KKVRRL +K ALS++ E ++
Sbjct: 64 PWKQKGTGRARQGSIRSPQWKGGGIVFGPTPRSYAYKLPKKVRRLAIKSALSSKVIENEI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + L++ KTK IV + +K L+ E + L+ +N+ V + + G+N
Sbjct: 124 IVLDQLQLSQPKTKEIVAMLKNLNVDRKALVV-APEFDENVALSARNIPGVKFVTAEGIN 182
Query: 281 VYSILQHDTLVMSRDAVNKI 300
V +L HD L+++++AV K+
Sbjct: 183 VLDVLVHDKLIITKEAVQKV 202
>gi|347730657|ref|ZP_08863771.1| 50S ribosomal protein L4 [Desulfovibrio sp. A2]
gi|347520576|gb|EGY27707.1| 50S ribosomal protein L4 [Desulfovibrio sp. A2]
Length = 206
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/207 (40%), Positives = 129/207 (62%), Gaps = 5/207 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+ V +++DK G + LA +VF+V ++ +I++ VVR A + GTH+TKT + VSG
Sbjct: 1 MAVVKVYDQDKKEAGELTLAPEVFEVEVKPEILNLVVRAHRAGLRSGTHATKTRAFVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G KPWRQKGTGRAR G+ R P +RGG + GP+PR + K+NKKVR+L LK+ALS+R A
Sbjct: 61 GAKPWRQKGTGRARSGSNRSPIWRGGAVIFGPQPREYGFKINKKVRQLALKMALSSRLAG 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
L+V + +E+P KTK + + +K +++ + L L+ +N+ + ++ +
Sbjct: 121 ENLMVVKGIELPGIKTKLFAKVADTLGLSKALVIT--ADENTTLALSARNIPGITLITAD 178
Query: 278 GLNVYSILQHDTLVMSRDAVNKIVDRM 304
L+VY IL+H LVM AV + R+
Sbjct: 179 QLSVYEILKHPKLVMFEGAVESVQARL 205
>gi|15612698|ref|NP_241001.1| 50S ribosomal protein L4 [Bacillus halodurans C-125]
gi|7674304|sp|Q9Z9L3.1|RL4_BACHD RecName: Full=50S ribosomal protein L4
gi|4512405|dbj|BAA75272.1| rplD [Bacillus halodurans]
gi|10172747|dbj|BAB03854.1| 50S ribosomal protein L4 [Bacillus halodurans C-125]
Length = 207
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 128/203 (63%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNE---DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N+ G + L+ VF + ++++H V Q A +QGTH TKT SEV G
Sbjct: 1 MPKVALYNQAGSQVGDIELSDAVFGIEPNENVLHDAVVMQQASLRQGTHKTKTRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+ GG T+ GP PRS++ KL KKVRRL +K ALS++
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWVGGGTVFGPTPRSYSYKLPKKVRRLAIKSALSSKVKA 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+++V E L + + KTK + + + + +K L+ ++ + L+ +N+ V + +
Sbjct: 121 EEIVVLESLALEAPKTKEMASILSGLSVDRKALVVTADY-NDNVALSARNIPGVTFVTAE 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
G+NV +++HD L++++DAV K+
Sbjct: 180 GVNVLDVIKHDKLIITKDAVEKV 202
>gi|150392159|ref|YP_001322208.1| 50S ribosomal protein L4 [Alkaliphilus metalliredigens QYMF]
gi|166990944|sp|A6TWI1.1|RL4_ALKMQ RecName: Full=50S ribosomal protein L4
gi|149952021|gb|ABR50549.1| ribosomal protein L4/L1e [Alkaliphilus metalliredigens QYMF]
Length = 207
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/200 (41%), Positives = 123/200 (61%), Gaps = 1/200 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N + M L+ ++F V + + +++ V+ QLA ++QGT S KT +EV G G+K
Sbjct: 4 VAVYNVSGQKVSEMELSENIFGVEVNEHVLYEAVKNQLANKRQGTQSAKTRAEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR GT+R P + GG T+ PKPR H+ L +KV+RL LK AL+++ +L
Sbjct: 64 PWKQKGTGRARAGTIRSPLWIGGGTVFAPKPRDHSYTLPRKVKRLALKSALTSKVNNEEL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
LV ++L + + KTK +VN + KKVLL G +K A+ N+ V +N
Sbjct: 124 LVLDELSLDTPKTKDMVNILKNLNADKKVLLVVGEKNEAIIKSAS-NIPGVTTALVNTIN 182
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY IL HD ++++DAV K+
Sbjct: 183 VYDILNHDKFIITKDAVEKV 202
>gi|374298075|ref|YP_005048266.1| 50S ribosomal protein L4 [Clostridium clariflavum DSM 19732]
gi|359827569|gb|AEV70342.1| LSU ribosomal protein L4P [Clostridium clariflavum DSM 19732]
Length = 207
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/195 (43%), Positives = 124/195 (63%), Gaps = 13/195 (6%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ +VF V + K+++H+VV QLA ++QGT STKT SEV G G KPWRQKGTGRAR
Sbjct: 15 GDINLSDEVFGVEVNKEVVHQVVVNQLANKRQGTQSTKTKSEVRGGGIKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG++R Q+ G + GPKPRS+ L KKVRRL LK LS++ E +++V + L +
Sbjct: 75 HGSIRSAQWVKGGIVLGPKPRSYRYTLPKKVRRLALKSVLSSKVNENEIIVLDKLSFDAI 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCI------HEKLKLATQNLHYVNVLPSVGLNVYSIL 285
KTK QM K L DG + EK++ + +N+ V L + +NVY ++
Sbjct: 135 KTK-------QMVEVLKNLKVDGTAVLLIAEKDEKIEKSARNIPGVKTLLANTINVYDLV 187
Query: 286 QHDTLVMSRDAVNKI 300
+H+ L++++DAV+K+
Sbjct: 188 KHNKLIITKDAVSKV 202
>gi|376298177|ref|YP_005169407.1| 50S ribosomal protein L4 [Desulfovibrio desulfuricans ND132]
gi|323460739|gb|EGB16604.1| ribosomal protein L4/L1e [Desulfovibrio desulfuricans ND132]
Length = 206
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 80/204 (39%), Positives = 123/204 (60%), Gaps = 2/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I V + N G LA +VF+V I +I+++VVR Q A ++QGTH+TK + +G G+K
Sbjct: 4 IQVVDQNNTKVGDFELAPEVFEVEIMPEILNQVVRAQRASQRQGTHATKNRALKAGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G+ P +RGG GP+PR + K+NKKVR+L LK+ALS+R +E K+
Sbjct: 64 PWRQKGTGRARAGSSNSPLWRGGAAAFGPQPRDYTFKVNKKVRKLALKMALSSRVSEAKM 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
V +++P KTK + K +++ KL ++ +N+ ++ V+ + LN
Sbjct: 124 TVVSSIDLPEIKTKAFAEVAKNLGLNKTLIVAKDA--DPKLTMSARNMPHIKVIEADKLN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY +L + LVM A + +R+
Sbjct: 182 VYDVLLYPELVMLESAAQDVQERL 205
>gi|66472248|ref|NP_001018572.1| 39S ribosomal protein L4, mitochondrial [Danio rerio]
gi|82192851|sp|Q503X2.1|RM04_DANRE RecName: Full=39S ribosomal protein L4, mitochondrial; Short=L4mt;
Short=MRP-L4
gi|63102139|gb|AAH95145.1| Zgc:110034 [Danio rerio]
Length = 302
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/189 (42%), Positives = 123/189 (65%), Gaps = 2/189 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L DVF VPIR DI+H V WQ ++ + KT +EV G G+KPW+QK TGRAR
Sbjct: 87 GVVDLHPDVFSVPIRLDILHAVEVWQRNFKRISYANVKTRAEVRGGGRKPWQQKRTGRAR 146
Query: 172 HGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPS 230
HG++R P +RGG +HGP+ P S+ L KVR GLKIALSA+ A+ L + + LE+P+
Sbjct: 147 HGSIRSPLWRGGGIIHGPRGPTSYYYMLPMKVRVQGLKIALSAKLAQDYLHIVDSLEIPT 206
Query: 231 HKTKFIVNYYNQMENTKKVLLCD-GGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDT 289
+++ + + VL+ D G + + AT++L VN++P++GLNV+S+L+H++
Sbjct: 207 PDPQYLQDLVKHRQWGDSVLIVDVGEEFPQNILKATEDLKTVNIIPALGLNVHSLLKHES 266
Query: 290 LVMSRDAVN 298
LV++ +AV
Sbjct: 267 LVLTLEAVK 275
>gi|303284373|ref|XP_003061477.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456807|gb|EEH54107.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 252
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/217 (42%), Positives = 129/217 (59%), Gaps = 8/217 (3%)
Query: 98 DLVIPVTNFFNEDKG-FMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSG 156
D +PV G ++L G FD P+R D++HRVV WQ K ++G TKT EVSG
Sbjct: 1 DKTLPVFTIDGTPTGETLILPGRHFDQPLRVDLVHRVVHWQRNKARKGRKKTKTRGEVSG 60
Query: 157 TGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAA 216
T +K QKG GRAR G+LR PQ RGG HGP RS+ LNK+VRR GLK+ALSA+ A
Sbjct: 61 TTRKARPQKGGGRARVGSLRAPQMRGGGVAHGPVVRSYETALNKRVRRAGLKVALSAKLA 120
Query: 217 EGK-LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIH----EKLKLATQNLHYV 271
EG+ +LV + KTK++ +++ + L G H K A++N+ YV
Sbjct: 121 EGRVMLVRSTHDGVEPKTKWLDERLDKLLGNQS--LAAGERSHSTWISNAKRASRNMPYV 178
Query: 272 NVLPSVGLNVYSILQHDTLVMSRDAVNKIVDRMHTPI 308
+V+ GLNVY IL++ +L M+ DA+ ++V R+ P+
Sbjct: 179 HVMHQRGLNVYDILRYRSLAMTPDALRELVRRLDAPL 215
>gi|336112798|ref|YP_004567565.1| 50S ribosomal protein L4 [Bacillus coagulans 2-6]
gi|335366228|gb|AEH52179.1| ribosomal protein L4/L1e [Bacillus coagulans 2-6]
Length = 207
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/204 (40%), Positives = 126/204 (61%), Gaps = 6/204 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N++ G + L VF + + ++ + Q A +QGTH K SEV G
Sbjct: 1 MPKVALYNQNGSQVGEVELNDAVFGIEPNEHVLFEAIIMQRASLRQGTHKVKGRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG T+ GP PRS++ KL KKVRRL +K ALS++ E
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVKE 120
Query: 218 GKLLVFEDLEVPSHKTK-FIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
+LV + L + KTK FI N + K +++ DG ++E + L+ +N+ V V+ +
Sbjct: 121 NNILVLDALSFDAPKTKDFIAVLKNLSVDKKALVVTDG--LNENVVLSARNIPGVTVVEA 178
Query: 277 VGLNVYSILQHDTLVMSRDAVNKI 300
G+NV ++ HD L+M++ AV K+
Sbjct: 179 TGVNVLDVVNHDQLIMTKSAVEKV 202
>gi|403388277|ref|ZP_10930334.1| 50S ribosomal protein L4 [Clostridium sp. JC122]
Length = 206
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 80/205 (39%), Positives = 127/205 (61%), Gaps = 5/205 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN++ G + L +F I K+ +H+VV QLA ++QGT S KT +EV G
Sbjct: 1 MPTIKVFNKEGKEVGDIQLNESIFGAEISKESMHQVVLAQLANKRQGTQSAKTRAEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G KPWRQKGTGRAR G++R PQ+ G + PKPR + + + K +RR +K AL+++ AE
Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIHGGIVFAPKPRDYRVSIPKSMRRTAMKSALTSKVAE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+++V E LE + KTK ++N N E K +++ +E + + +N+ V VLP
Sbjct: 121 NEMIVIESLEFEAPKTKEMINVLNAFEAKKTLIVVAES--NENVYKSARNIPGVAVLPVN 178
Query: 278 GLNVYSILQHDTLVMSRDAVNKIVD 302
LNVY IL+++ +++++AV+KI +
Sbjct: 179 NLNVYDILKYEKFMVTKEAVSKIEE 203
>gi|148284213|ref|YP_001248303.1| 50S ribosomal protein L4 [Orientia tsutsugamushi str. Boryong]
gi|189183952|ref|YP_001937737.1| 50S ribosomal protein L4 [Orientia tsutsugamushi str. Ikeda]
gi|166234696|sp|A5CCL1.1|RL4_ORITB RecName: Full=50S ribosomal protein L4
gi|226730701|sp|B3CT06.1|RL4_ORITI RecName: Full=50S ribosomal protein L4
gi|146739652|emb|CAM79441.1| 50S ribosomal protein L4 [Orientia tsutsugamushi str. Boryong]
gi|189180723|dbj|BAG40503.1| 50S ribosomal protein L4 [Orientia tsutsugamushi str. Ikeda]
Length = 210
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 86/207 (41%), Positives = 118/207 (57%), Gaps = 4/207 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N E + + L VF + R DII V+ WQLAKR GTH TKTIS VSGT KK
Sbjct: 3 VKVYNLLQEIEKEVELNPSVFCLKYRPDIIKLVIDWQLAKRMSGTHCTKTISGVSGTTKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P++QKGTG AR G+LR Q RGG HGP RSH + KK+R+ LK ALS + + KL
Sbjct: 63 PFKQKGTGNARQGSLRSVQMRGGGISHGPVVRSHEFDVPKKIRKQALKYALSYKLSVNKL 122
Query: 221 LVFEDLEVPSHKTKFIVNY---YNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+V +D + S+KT + N YN N D + LA++NL +NV+ +
Sbjct: 123 IVVDDFNIGSNKTAVLKNLLKKYN-YSNYSGFFCIDDQNVDRNFFLASRNLFNLNVVAQI 181
Query: 278 GLNVYSILQHDTLVMSRDAVNKIVDRM 304
G N Y I++HD ++++ A + R+
Sbjct: 182 GANPYDIMKHDCVMVTLSAAKSLEMRL 208
>gi|83941499|ref|ZP_00953961.1| 50S ribosomal protein L4 [Sulfitobacter sp. EE-36]
gi|83847319|gb|EAP85194.1| 50S ribosomal protein L4 [Sulfitobacter sp. EE-36]
Length = 205
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 80/185 (43%), Positives = 113/185 (61%), Gaps = 2/185 (1%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
+F + R DI+HRVVRWQ QQGTH KT SEVS + KK +RQKGTG ARHG P
Sbjct: 22 LFGLEPRADILHRVVRWQRNNAQQGTHKVKTRSEVSYSTKKIYRQKGTGGARHGARSAPI 81
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
FR G GP PRSH L KK R+LGL+ ALS++A G L++ +D+ KT +
Sbjct: 82 FRSGGIYKGPTPRSHGHDLTKKFRKLGLRHALSSKAKTGNLVIIDDV-TSDGKTAALAKQ 140
Query: 240 YNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNK 299
+ K+ L+ DG ++E A +N+ +++LP++G NVY IL+ DTLV+++ +
Sbjct: 141 VKNL-GWKRALIIDGASVNENFLQAARNIEGLDILPTMGANVYDILKRDTLVITKAGIEA 199
Query: 300 IVDRM 304
+ R+
Sbjct: 200 LEARL 204
>gi|254449666|ref|ZP_05063103.1| ribosomal protein L4/L1 family [Octadecabacter arcticus 238]
gi|198264072|gb|EDY88342.1| ribosomal protein L4/L1 family [Octadecabacter arcticus 238]
Length = 205
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 116/193 (60%), Gaps = 2/193 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +F + R DI+HRVVRWQ Q GTH KT SEV + KK +RQKGTG AR
Sbjct: 14 GSVELDEAIFGLEPRIDILHRVVRWQRNNAQAGTHKVKTRSEVKYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG P FRGG GP PRSH +L KK R+LGL+ ALSA+ A G+L++ + +++
Sbjct: 74 HGARSAPIFRGGGIYKGPTPRSHGHELTKKFRKLGLRHALSAKVAAGELVIVDSIDMKDA 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KT + + K+ L+ D ++E +A +N+ +N LP +G NVY IL+ DTLV
Sbjct: 134 KTSALAKQVGAL-GWKRCLIID-ATVNENFAVAARNITTINALPVMGANVYDILRSDTLV 191
Query: 292 MSRDAVNKIVDRM 304
+++ V + R+
Sbjct: 192 LTKAGVEALEARL 204
>gi|399991378|ref|YP_006571618.1| 50S ribosomal protein L4 [Phaeobacter gallaeciensis DSM 17395 = CIP
105210]
gi|398655933|gb|AFO89899.1| 50S ribosomal protein L4 [Phaeobacter gallaeciensis DSM 17395 = CIP
105210]
Length = 205
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 116/193 (60%), Gaps = 2/193 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++F + R DI+HRVVRWQ Q GTH KT SE S + KK +RQKGTG AR
Sbjct: 14 GDIELDAELFGLEPRTDILHRVVRWQRNNAQAGTHKVKTRSETSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG P FR G GP PRSH L KK R+LGL+ ALSA+A G+L+V E+ + +
Sbjct: 74 HGDRNAPIFRKGGIYKGPTPRSHGHDLTKKFRKLGLRHALSAKAKAGELVVIENAD-SAG 132
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KT + + K+ L+ DG + E A +N+ +++LP++G NVY IL+ DTLV
Sbjct: 133 KTAALAKQVKDL-GWKRALVIDGASVDEGFARAARNIEGLDILPTMGANVYDILKRDTLV 191
Query: 292 MSRDAVNKIVDRM 304
+++ V + R+
Sbjct: 192 LTKAGVEALEARL 204
>gi|86135763|ref|ZP_01054342.1| 50S ribosomal protein L4 [Roseobacter sp. MED193]
gi|85826637|gb|EAQ46833.1| 50S ribosomal protein L4 [Roseobacter sp. MED193]
Length = 205
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 85/204 (41%), Positives = 119/204 (58%), Gaps = 2/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + L D+F + R DI+HRVVRWQ Q GTH KT SEV + KK
Sbjct: 3 LDVMNLDGSKAGDIELNADLFGLEPRADILHRVVRWQRNNAQAGTHKVKTRSEVKYSTKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
+RQKGTG ARHG P FRGG GP RSH +L KK R+LGL+ ALSA+A G+L
Sbjct: 63 IYRQKGTGGARHGARSAPIFRGGGIYKGPVVRSHGHELTKKFRKLGLRHALSAKAKAGEL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V D KT + + K+ L+ DG ++E A++N+ +++LP++G N
Sbjct: 123 VVISDAAAEG-KTGALAKQVANL-GWKRALVIDGAEVNEGFLKASRNIEGLDILPTMGAN 180
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL+ DTLV+++ + + R+
Sbjct: 181 VYDILKRDTLVITKAGLEALEARL 204
>gi|237786394|ref|YP_002907099.1| 50S ribosomal protein L4 [Corynebacterium kroppenstedtii DSM 44385]
gi|259491550|sp|C4LL51.1|RL4_CORK4 RecName: Full=50S ribosomal protein L4
gi|237759306|gb|ACR18556.1| 50S ribosomal protein L4 [Corynebacterium kroppenstedtii DSM 44385]
Length = 219
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/209 (42%), Positives = 126/209 (60%), Gaps = 6/209 (2%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+L + V G + L VFDV + ++H+VV QLA R+QGTH+TKT +V G
Sbjct: 3 NLTLDVHTADGSTNGTVDLPSSVFDVEVSTPLLHQVVTAQLAARRQGTHATKTRGQVRGG 62
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KP+RQKGTGRAR G++R PQF GG T+HGP+PR + + KK++ L+ ALS RA
Sbjct: 63 GRKPYRQKGTGRARQGSIRAPQFTGGGTVHGPQPRDYDQRTPKKMKAAALRGALSDRARH 122
Query: 218 GKLLVFEDL---EVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
++ V EDL + PS TK + ++ + K VL+ G +K A +NL V++L
Sbjct: 123 DRIHVVEDLVPGQTPS--TKAARTFIGRLTDRKSVLVVLGREDVNSIKSA-RNLPNVHIL 179
Query: 275 PSVGLNVYSILQHDTLVMSRDAVNKIVDR 303
PS LN Y +L D LV S +A+N ++R
Sbjct: 180 PSDQLNTYDVLNSDDLVFSVEALNAFIER 208
>gi|163745538|ref|ZP_02152898.1| 50S ribosomal protein L4 [Oceanibulbus indolifex HEL-45]
gi|161382356|gb|EDQ06765.1| 50S ribosomal protein L4 [Oceanibulbus indolifex HEL-45]
Length = 205
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/206 (40%), Positives = 119/206 (57%), Gaps = 2/206 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + V + G + L +F + R DI+HRVVRWQ QQGTH KT SE S +
Sbjct: 1 MKLDVIKLDGGNAGSVDLDEALFGLEPRADILHRVVRWQRNNAQQGTHKVKTRSETSYST 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK +RQKGTG ARHG P FR G GP PRSH +L KK R+LGL+ ALSA+A G
Sbjct: 61 KKIYRQKGTGGARHGDRNAPIFRKGGIYKGPTPRSHGHELTKKFRKLGLRHALSAKAKAG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
L++ D KT + + + K+ L+ DG ++E A +N+ +++LPS+G
Sbjct: 121 SLVII-DEATSEGKTAALAKQVSNL-GWKRTLVIDGASVNENFAQAARNIEGLDILPSMG 178
Query: 279 LNVYSILQHDTLVMSRDAVNKIVDRM 304
NVY IL+ DTLV+++ + + R+
Sbjct: 179 ANVYDILKRDTLVITKAGIEALEARL 204
>gi|347543074|ref|YP_004857712.1| 50S ribosomal protein L4 [Candidatus Arthromitus sp. SFB-rat-Yit]
gi|346986111|dbj|BAK81786.1| 50S ribosomal protein L4 [Candidatus Arthromitus sp. SFB-rat-Yit]
Length = 208
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 120/200 (60%), Gaps = 1/200 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N E G + L +VFDV I+K +H+VV QLA ++QGTHS KT SEVSG GKK
Sbjct: 4 VEVYNICGEKVGELELLKEVFDVEIKKYAVHQVVVAQLANKRQGTHSAKTRSEVSGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+ G + PKPR + + ++K +RR + L+++ E L
Sbjct: 64 PWRQKGTGRARQGSIRAPQWIHGGVVFAPKPRDYRMSISKTLRRAAITSVLTSKLKEKNL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
LV ++ KTK +V N ++ +LL + T NL V VLP +N
Sbjct: 124 LVLNEISFDFPKTKEMVKIMNNLKIDSNMLLVTETSDKNVYRSGT-NLQSVKVLPVNNIN 182
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY +L++D LV+++ A+ K+
Sbjct: 183 VYDLLKYDKLVITQGALKKL 202
>gi|153952862|ref|YP_001393627.1| 50S ribosomal protein L4 [Clostridium kluyveri DSM 555]
gi|219853527|ref|YP_002470649.1| hypothetical protein CKR_0184 [Clostridium kluyveri NBRC 12016]
gi|189029496|sp|A5N4P8.1|RL4_CLOK5 RecName: Full=50S ribosomal protein L4
gi|254803727|sp|B9DYB0.1|RL4_CLOK1 RecName: Full=50S ribosomal protein L4
gi|146345743|gb|EDK32279.1| RplD [Clostridium kluyveri DSM 555]
gi|219567251|dbj|BAH05235.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 206
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 82/203 (40%), Positives = 128/203 (63%), Gaps = 5/203 (2%)
Query: 101 IPVTNFFNEDKGFMV---LAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P+ FN++ + L+ VF V + + ++H+VV LA ++QGT S KT +EVSG
Sbjct: 1 MPIVGLFNKEGQKITDFELSDKVFGVEVNQYVMHQVVVALLANKRQGTQSAKTRAEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G KPWRQKGTGRAR G++R PQ+ G + KPRS+ I + K RRL +K ALS++ E
Sbjct: 61 GIKPWRQKGTGRARQGSIRSPQWIHGGVVFAVKPRSYRISVPKSARRLAMKSALSSKVEE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+++V E LE+ + KTK +V + E KK L+ ++ + + +N+ V+V+P
Sbjct: 121 NQIVVLESLEMDTPKTKEVVKILDAFE-AKKTLIVTAES-NQNVYKSARNIQGVSVIPVN 178
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
LNVY +L+ D L++++DAV+KI
Sbjct: 179 NLNVYDLLKFDKLIITKDAVSKI 201
>gi|400755778|ref|YP_006564146.1| 50S ribosomal protein L4 [Phaeobacter gallaeciensis 2.10]
gi|398654931|gb|AFO88901.1| 50S ribosomal protein L4 [Phaeobacter gallaeciensis 2.10]
Length = 205
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 116/193 (60%), Gaps = 2/193 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++F + R DI+HRVVRWQ Q GTH KT SE S + KK +RQKGTG AR
Sbjct: 14 GDIELDAELFGLEPRTDILHRVVRWQRNNAQAGTHKVKTRSETSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG P FR G GP PRSH L KK R+LGL+ ALSA+A G+L+V E+ + +
Sbjct: 74 HGDRNAPIFRKGGIYKGPTPRSHGHDLTKKFRKLGLRHALSAKAKAGELVVIENAD-SAG 132
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KT + + K+ L+ DG + E A +N+ +++LP++G NVY IL+ DTLV
Sbjct: 133 KTAALAKQVKDL-GWKRALVIDGASVDEGFARAARNIEGLDILPTMGANVYDILKRDTLV 191
Query: 292 MSRDAVNKIVDRM 304
+++ V + R+
Sbjct: 192 LTKAGVEALEARL 204
>gi|300857245|ref|YP_003782229.1| 50S ribosomal protein L4 [Clostridium ljungdahlii DSM 13528]
gi|300437360|gb|ADK17127.1| 50S ribosomal protein L4 [Clostridium ljungdahlii DSM 13528]
Length = 206
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/204 (40%), Positives = 132/204 (64%), Gaps = 7/204 (3%)
Query: 101 IPVTNFFNEDKGFMV----LAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSG 156
+P FN++ G V L+ VF V + ++ +H+VV LA ++QGT S KT +EVSG
Sbjct: 1 MPKVGLFNKE-GQKVEDFELSDKVFGVEVNENAVHQVVVALLANKRQGTQSAKTRAEVSG 59
Query: 157 TGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAA 216
G KPWRQKGTGRAR G++R PQ+ G + KPR + I L K V+R+ +K ALS++ A
Sbjct: 60 GGIKPWRQKGTGRARQGSIRAPQWIHGGIVFAVKPRDYRISLTKSVKRVAMKSALSSKVA 119
Query: 217 EGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
+ +++V E+LE+ + KTK IV + N KK L+ ++ + ++ +N+ V+V+P
Sbjct: 120 DNEMVVLENLELETPKTKEIVKMLDAF-NAKKALIVTAES-NKNVYVSGRNIQGVSVIPV 177
Query: 277 VGLNVYSILQHDTLVMSRDAVNKI 300
LNVY +L+++ L++++DAV+KI
Sbjct: 178 NNLNVYDLLKYEKLIITKDAVSKI 201
>gi|156405170|ref|XP_001640605.1| predicted protein [Nematostella vectensis]
gi|156227740|gb|EDO48542.1| predicted protein [Nematostella vectensis]
Length = 299
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/203 (44%), Positives = 123/203 (60%), Gaps = 11/203 (5%)
Query: 107 FNEDK--GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQ 164
F +DK G + L VF R DI+HRVV WQ AKR+ GT K SEV G G+KPW Q
Sbjct: 91 FKDDKSLGMIELNDFVFGENPRIDILHRVVVWQRAKRRAGTACVKDRSEVRGGGRKPWPQ 150
Query: 165 KGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV-- 222
KG +AR G++R P FRGG +HGPKPRS+ L KKVRR+GL++ALS R A+G L +
Sbjct: 151 KGLNKARQGSIRAPHFRGGGVVHGPKPRSYEYTLPKKVRRMGLRVALSVRLAQGDLHIVE 210
Query: 223 -FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNV 281
F+D+E + ++ +Q VL+ G +E+L A +L V+V S +NV
Sbjct: 211 SFDDIE----DDQDLMPILDQRGWQSAVLV--DGSPNERLFEAAADLDKVDVFYSENVNV 264
Query: 282 YSILQHDTLVMSRDAVNKIVDRM 304
YSIL L++S DAV ++ +R+
Sbjct: 265 YSILLRHNLILSLDAVKQLEERL 287
>gi|354558441|ref|ZP_08977696.1| ribosomal protein L4/L1e [Desulfitobacterium metallireducens DSM
15288]
gi|353546919|gb|EHC16366.1| ribosomal protein L4/L1e [Desulfitobacterium metallireducens DSM
15288]
Length = 207
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 82/199 (41%), Positives = 117/199 (58%), Gaps = 1/199 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + L VF + ++H V QLA +++GT ST EV G G+K
Sbjct: 4 VQVVNMQGSPVGEIELNEYVFGIEPNAHVLHSAVVAQLASQRRGTSSTLLRGEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R P FRGG + GPKPR + L KKVRRL L+ ALS++ E KL
Sbjct: 64 PWRQKGTGRARAGSIRSPLFRGGAVLFGPKPRDYGFSLPKKVRRLALRSALSSKVNEQKL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V EDL + KT+ +V + KK L+ +++ + L+ +N+ V G+N
Sbjct: 124 IVLEDLSLTEAKTREMVKVLKALNADKKALIVT-DELNDTVVLSARNIEGVKATQVEGMN 182
Query: 281 VYSILQHDTLVMSRDAVNK 299
VY +L+HD +VM++ AV K
Sbjct: 183 VYDLLKHDVIVMTKAAVAK 201
>gi|393770434|ref|ZP_10358930.1| 50S ribosomal protein L4 [Methylobacterium sp. GXF4]
gi|392724114|gb|EIZ81483.1| 50S ribosomal protein L4 [Methylobacterium sp. GXF4]
Length = 206
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/204 (39%), Positives = 122/204 (59%), Gaps = 1/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ VT G + L +F + R D++ R+VRWQLAKR+ GTH+ + S+V+ T KK
Sbjct: 3 LDVTTLDGAGAGSVELNETIFGLEPRADLLQRMVRWQLAKRRAGTHAVQNRSDVNRTRKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTG ARHG PQFRGG GP R H+ L KKVR L L+ ALSA+A L
Sbjct: 63 LYKQKGTGNARHGAASAPQFRGGGRAFGPVVRDHSHDLPKKVRALALRHALSAKAKASTL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V +D+++ HKTK ++ + +M L+ G + A + + ++VLP G+N
Sbjct: 123 IVVDDIKIEDHKTKGLIERFGKM-GLSNALIIGGAEVDVNFGRAARAIPQIDVLPVQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL+ +TLV+++ AV+ + +R
Sbjct: 182 VYDILRRNTLVLTKAAVDALEERF 205
>gi|170748637|ref|YP_001754897.1| 50S ribosomal protein L4 [Methylobacterium radiotolerans JCM 2831]
gi|226730692|sp|B1LWS7.1|RL4_METRJ RecName: Full=50S ribosomal protein L4
gi|170655159|gb|ACB24214.1| ribosomal protein L4/L1e [Methylobacterium radiotolerans JCM 2831]
Length = 206
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 120/193 (62%), Gaps = 1/193 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++F + R D++ R+VRWQLAKR+ GTH+ + S+V+ T KK ++QKGTG AR
Sbjct: 14 GSVELNEEIFGLEPRADLLQRMVRWQLAKRRAGTHAVQNRSDVNRTRKKLYKQKGTGNAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG PQFRGG GP R H+ L KKVR L L+ ALS++A L+V +D+++ H
Sbjct: 74 HGAASAPQFRGGGRAFGPVVRDHSHDLPKKVRALALRHALSSKAKASTLIVVDDIKIEDH 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KTK ++ + +M L+ G + A + + ++VLP G+NVY IL+ DTLV
Sbjct: 134 KTKGLIERFGKM-GLSNALIIGGAEVDVNFGRAARAIPQIDVLPVQGINVYDILRRDTLV 192
Query: 292 MSRDAVNKIVDRM 304
+++ AV+ + +R
Sbjct: 193 LTKAAVDALEERF 205
>gi|407978616|ref|ZP_11159445.1| 50S ribosomal protein L4 [Bacillus sp. HYC-10]
gi|407414812|gb|EKF36438.1| 50S ribosomal protein L4 [Bacillus sp. HYC-10]
Length = 207
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 121/203 (59%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN++ G + L VF + + ++ + Q A +QGTH KT SEV G
Sbjct: 1 MPKVALFNQNGSTNGEIELNASVFGIEPNESVVFDAILMQRASLRQGTHKVKTRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ KL KKVRRL +K LS++ +
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSYKLPKKVRRLAIKSVLSSKVID 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++V EDL + + KTK + KK L+ +E + L+ +N+ V V+ +
Sbjct: 121 NNIIVLEDLTLDAVKTKEFAGILKGLSVEKKALIVTADA-NETIALSARNIPGVTVVEAK 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
G+NV ++ HD L++++ AV K+
Sbjct: 180 GINVLDVVNHDKLLITKAAVEKV 202
>gi|83854977|ref|ZP_00948507.1| 50S ribosomal protein L4 [Sulfitobacter sp. NAS-14.1]
gi|83842820|gb|EAP81987.1| 50S ribosomal protein L4 [Sulfitobacter sp. NAS-14.1]
Length = 205
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 80/185 (43%), Positives = 112/185 (60%), Gaps = 2/185 (1%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
+F + R DI+HRVVRWQ QQGTH KT SEVS + KK +RQKGTG ARHG P
Sbjct: 22 LFGLEPRADILHRVVRWQRNNAQQGTHKVKTRSEVSYSTKKIYRQKGTGGARHGARSAPI 81
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
FR G GP PRSH L KK R+LGL+ ALS++A G L++ +D KT +
Sbjct: 82 FRSGGIYKGPTPRSHGHDLTKKFRKLGLRHALSSKAKTGNLVIIDD-ATSDGKTAALAKQ 140
Query: 240 YNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNK 299
+ K+ L+ DG ++E A +N+ +++LP++G NVY IL+ DTLV+++ +
Sbjct: 141 VKNL-GWKRALIIDGASVNENFLQAARNIEGLDILPTMGANVYDILKRDTLVITKAGIEA 199
Query: 300 IVDRM 304
+ R+
Sbjct: 200 LEARL 204
>gi|289423702|ref|ZP_06425501.1| ribosomal protein, L4/L1 family [Peptostreptococcus anaerobius
653-L]
gi|429727971|ref|ZP_19262717.1| 50S ribosomal protein L4 [Peptostreptococcus anaerobius VPI 4330]
gi|289155952|gb|EFD04618.1| ribosomal protein, L4/L1 family [Peptostreptococcus anaerobius
653-L]
gi|429150828|gb|EKX93722.1| 50S ribosomal protein L4 [Peptostreptococcus anaerobius VPI 4330]
Length = 207
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 121/200 (60%), Gaps = 1/200 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I V N ++ G + L +FD+ + + +++ V+ QLA ++QGT S KT +EV G G+K
Sbjct: 4 INVLNVSGQNVGEIELNDSIFDIEVNEHVLYEAVKCQLANKRQGTQSAKTRAEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R Q+ GG PKPR ++ L KKVRRL +K ALS++ + ++
Sbjct: 64 PWRQKGTGRARQGSIRSVQWVGGGVAFAPKPRDYSYSLPKKVRRLAMKSALSSKVQDKEI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + L + + KTK IVN + + KK L+ +K + +N+ NV LN
Sbjct: 124 IVLDALSLEAPKTKEIVNLFKNVNAAKKTLVVTAENDVNVVK-SVRNIEGANVAHVSTLN 182
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY IL D+ +++ DAV K+
Sbjct: 183 VYDILNCDSFIITTDAVKKV 202
>gi|347751592|ref|YP_004859157.1| 50S ribosomal protein L4 [Bacillus coagulans 36D1]
gi|347584110|gb|AEP00377.1| ribosomal protein L4/L1e [Bacillus coagulans 36D1]
Length = 207
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 82/204 (40%), Positives = 126/204 (61%), Gaps = 6/204 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N++ G + L VF + + ++ + Q A +QGTH K SEV G
Sbjct: 1 MPKVALYNQNGSQVGEVELNDAVFGIEPNEHVLFEAIIMQRASLRQGTHKVKGRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG T+ GP PRS++ KL KKVRRL +K ALS++ E
Sbjct: 61 GRKPWRQKGTGRARQGSIRAPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVRE 120
Query: 218 GKLLVFEDLEVPSHKTK-FIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
+LV + L + KTK FI N + K +++ DG ++E + L+ +N+ + V+ +
Sbjct: 121 NNILVLDALNFDAPKTKDFIAVLKNLSVDKKALVVTDG--LNENVVLSARNIPGITVVEA 178
Query: 277 VGLNVYSILQHDTLVMSRDAVNKI 300
G+NV ++ HD L+M++ AV K+
Sbjct: 179 TGVNVLDVVNHDQLIMTKSAVEKV 202
>gi|431792470|ref|YP_007219375.1| 50S ribosomal protein L4 [Desulfitobacterium dichloroeliminans LMG
P-21439]
gi|430782696|gb|AGA67979.1| 50S ribosomal protein L4, bacterial/organelle [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 207
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/199 (41%), Positives = 116/199 (58%), Gaps = 1/199 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + L VF + ++H+ V QLA +++GTHST EV G G+K
Sbjct: 4 VQVVNMQGSPVGELELNEYVFGIEPNVHVLHQAVVGQLASQRRGTHSTLLRGEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R P +RGG + GPKPR + L KKVRRL L+ ALS++ E +L
Sbjct: 64 PWRQKGTGRARAGSIRSPLWRGGAILFGPKPRKYGFSLPKKVRRLALRSALSSKVNEQQL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V EDL + KT+ +V + +KK LL I E + +N+ V P G+N
Sbjct: 124 IVLEDLSLSEAKTREMVKVLKALNVSKKALLVTDEFI-EAIDRTARNIEGVKTTPVEGMN 182
Query: 281 VYSILQHDTLVMSRDAVNK 299
VY +L D +VM++ AV K
Sbjct: 183 VYDLLNADVIVMTKAAVMK 201
>gi|392958544|ref|ZP_10324053.1| 50S ribosomal protein L4 [Bacillus macauensis ZFHKF-1]
gi|391875445|gb|EIT84056.1| 50S ribosomal protein L4 [Bacillus macauensis ZFHKF-1]
Length = 207
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/203 (39%), Positives = 122/203 (60%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P F +D G + L VF + K+++ V Q A +QG H K SEV+G
Sbjct: 1 MPKVAIFKQDGTQAGDLELNASVFGIEPNKNVLFDAVVMQQASLRQGNHDVKNRSEVAGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPW+QKGTGRAR G++R PQ+ GG + GP PRS++ KL KKVRRL +K ALS++ +
Sbjct: 61 GRKPWKQKGTGRARQGSIRSPQWVGGGVVFGPTPRSYSYKLPKKVRRLAIKSALSSKVID 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
L+V + L + KTK + + +K L+ G +E + L+ +N+ V V+ +
Sbjct: 121 NDLVVLDALSFEAPKTKDMKKVLENLSADRKALVVTGD-FNEFVALSARNIPGVTVVTAS 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
G+NV +L+HD LVM++DAV K+
Sbjct: 180 GVNVLDVLKHDKLVMTKDAVEKV 202
>gi|225629697|ref|ZP_03787669.1| ribosomal protein L4 [Wolbachia endosymbiont of Muscidifurax
uniraptor]
gi|225591450|gb|EEH12518.1| ribosomal protein L4 [Wolbachia endosymbiont of Muscidifurax
uniraptor]
Length = 201
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 119/195 (61%), Gaps = 3/195 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+ N N++ G L +F + I+H +VRWQLA R+ GTH TK IS+VSGT KP+
Sbjct: 5 LVNLSNDNVGTAQLNPLIFSAKQKLSILHDIVRWQLANRRAGTHKTKGISDVSGTTAKPY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
QK T RAR G+LR PQFRGG + P RSH LNKKVR+ GLKIALS + ++++
Sbjct: 65 GQKRTARARPGSLRSPQFRGGGIILRPFVRSHTYSLNKKVRKFGLKIALSLKYLNNQVII 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
++L + KT + + + ++ D G + L A +NLHYV+++ +GLNV+
Sbjct: 125 LDNLNIDVKKTSEMCKCIKNFKFSSFSIVGDYG---DDLLRAAKNLHYVDLIKPIGLNVF 181
Query: 283 SILQHDTLVMSRDAV 297
IL H+ +++++D +
Sbjct: 182 DILNHECVMLTKDTL 196
>gi|293375390|ref|ZP_06621671.1| ribosomal protein L4/L1 family protein [Turicibacter sanguinis
PC909]
gi|325844472|ref|ZP_08168199.1| 50S ribosomal protein L4 [Turicibacter sp. HGF1]
gi|292645943|gb|EFF63972.1| ribosomal protein L4/L1 family protein [Turicibacter sanguinis
PC909]
gi|325489146|gb|EGC91530.1| 50S ribosomal protein L4 [Turicibacter sp. HGF1]
Length = 207
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 85/203 (41%), Positives = 122/203 (60%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N+ G +VL +F + K + V Q A +QGTH TKT +EV G
Sbjct: 1 MPQVALYNQQGAQVGEIVLNEAIFGIEPHKQAMFDAVIMQRASMRQGTHKTKTRTEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPW+QKGTGRAR G++R PQ+RGG + GP PRS+A KLNKKVRRL LK AL+ + E
Sbjct: 61 GRKPWKQKGTGRARQGSIRAPQWRGGGIVFGPVPRSYAYKLNKKVRRLALKSALATKVVE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+++V + L + KTK ++N + T K L+ + ++L+T+N+ V VL
Sbjct: 121 NEIVVLDQLVFEAPKTKQMINVLGALNVTSKALVVTAEE-NAAVELSTRNIPGVKVLTVS 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
LNV +L LV+++DAV KI
Sbjct: 180 QLNVLDLLDATKLVITQDAVKKI 202
>gi|389573511|ref|ZP_10163585.1| ribosomal protein L4/L1 family [Bacillus sp. M 2-6]
gi|388426826|gb|EIL84637.1| ribosomal protein L4/L1 family [Bacillus sp. M 2-6]
Length = 207
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 121/203 (59%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN++ G + L VF + + ++ + Q A +QGTH KT SEV G
Sbjct: 1 MPKVALFNQNGSTNGEIELNASVFGIEPNESVVFDAILMQRASLRQGTHKVKTRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ KL KKVRRL +K LS++ +
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSYKLPKKVRRLAIKSVLSSKVID 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++V EDL + + KTK + KK L+ +E + L+ +N+ V V+ +
Sbjct: 121 NNIIVLEDLTLDAVKTKEFAGILKGLSVEKKALIVTADA-NETVALSARNIPGVTVVEAN 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
G+NV ++ HD L++++ AV K+
Sbjct: 180 GINVLDVVNHDKLLITKAAVEKV 202
>gi|260893371|ref|YP_003239468.1| 50S ribosomal protein L4 [Ammonifex degensii KC4]
gi|260865512|gb|ACX52618.1| ribosomal protein L4/L1e [Ammonifex degensii KC4]
Length = 207
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 86/198 (43%), Positives = 117/198 (59%), Gaps = 1/198 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V N E G M L +VF + ++H VV LA R++GTHSTKT EV G G+KPW
Sbjct: 6 VYNLAGEPVGEMELKEEVFGIEPNPYVVHEVVVMHLANRRRGTHSTKTRGEVRGGGRKPW 65
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQKGTGRARHG++R P +R G + GPKPR + + KKVRRL LK LS + G L+V
Sbjct: 66 RQKGTGRARHGSIRSPIWRKGGVVFGPKPRDYDYTVPKKVRRLALKSVLSDKLRAGNLVV 125
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
E+L + + KTK ++ VLL G +KLAT NL V LP LNVY
Sbjct: 126 LEELRLEAPKTKLAKELLSRFGVETGVLLV-GADPDPVVKLATANLEGVKFLPVNNLNVY 184
Query: 283 SILQHDTLVMSRDAVNKI 300
+L++ + ++R+A+ ++
Sbjct: 185 DLLRYPKVFITREALARV 202
>gi|260664854|ref|ZP_05865705.1| ribosomal protein L4/L1 [Lactobacillus jensenii SJ-7A-US]
gi|297205088|ref|ZP_06922484.1| ribosomal protein L4/L1 family protein [Lactobacillus jensenii
JV-V16]
gi|260561337|gb|EEX27310.1| ribosomal protein L4/L1 [Lactobacillus jensenii SJ-7A-US]
gi|297149666|gb|EFH29963.1| ribosomal protein L4/L1 family protein [Lactobacillus jensenii
JV-V16]
Length = 205
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 118/192 (61%), Gaps = 3/192 (1%)
Query: 109 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTG 168
+D G + L +VF + ++++ V Q A +QGTH+TK S V G GKKPWRQKGTG
Sbjct: 12 KDAGEVTLNDNVFGIEPNENVVFDAVIRQRAGMRQGTHATKNRSAVRGGGKKPWRQKGTG 71
Query: 169 RARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEV 228
RAR G++R PQ+RGG T+ GP PRS+A L +KVRRL +K LS + + L+V + L +
Sbjct: 72 RARQGSIRAPQWRGGGTVFGPTPRSYAYSLPRKVRRLAIKSVLSQKLQDNNLIVLDQLSL 131
Query: 229 PSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHD 288
+ KTK + KVL+ +E ++L+ +NL V V+P GLNV + +D
Sbjct: 132 DAPKTKEFKAVLGNLNVDSKVLVV---SDNENVQLSARNLENVKVVPVNGLNVVDAVNYD 188
Query: 289 TLVMSRDAVNKI 300
L++++DAV +I
Sbjct: 189 KLILTQDAVKRI 200
>gi|114799746|ref|YP_761528.1| 50S ribosomal protein L4 [Hyphomonas neptunium ATCC 15444]
gi|123128466|sp|Q0BYB5.1|RL4_HYPNA RecName: Full=50S ribosomal protein L4
gi|114739920|gb|ABI78045.1| ribosomal protein L4 [Hyphomonas neptunium ATCC 15444]
Length = 214
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 82/206 (39%), Positives = 123/206 (59%), Gaps = 2/206 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDV-PIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+ + V + G + L +F + IR DI+ R VRWQLA+RQ GTH K+ SEV+ T
Sbjct: 1 MELAVKTLAGDAAGNIDLDDAIFGIDEIRGDILQRTVRWQLARRQAGTHKAKSRSEVNRT 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
KK +QKG+G ARHG+ P F GG HGP+ RSHA L KK+R++ L ALS++A +
Sbjct: 61 TKKSIKQKGSGGARHGSRNAPIFVGGGIAHGPRVRSHAHDLPKKIRKMALAHALSSKAKD 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++V + E+ S KTK ++ + + + L+ G ++E A +N+ ++VLP
Sbjct: 121 SSIMVIDTCELDSPKTKGLIQAFKDL-GIENALIISGTEVNENFARAARNIPNIDVLPVA 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKIVDR 303
GLNVY IL+ TLV++++A I R
Sbjct: 180 GLNVYDILRRRTLVITKEAAEGIKAR 205
>gi|452994642|emb|CCQ93749.1| ribosomal protein L4 [Clostridium ultunense Esp]
Length = 207
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 123/203 (60%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N++ G M L +VF + ++H+ V A +QGTH+T+ + V G
Sbjct: 1 MPKVTVYNQNGQTVGEMDLKDEVFGIEPNPHVLHQAVVLYQASLRQGTHATRNRALVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
GKKPWRQKGTGRAR G++R PQ+ GG + GP PRS+ + KK+RRL ++ A S++ E
Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWVGGGVVFGPTPRSYTFTMPKKMRRLAIRSAFSSKVKE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+LLV + L + KTK V + +K L+ G +E L L+ +N+ V ++P+
Sbjct: 121 NELLVLDTLSLEKPKTKEFVQILKNLNVNRKALVIIGEK-NETLSLSARNIPGVKLVPAT 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
G+NVY +L D +VM++DAVNK+
Sbjct: 180 GVNVYDLLNVDRVVMTKDAVNKV 202
>gi|157816923|ref|NP_001102224.1| 39S ribosomal protein L4, mitochondrial [Rattus norvegicus]
gi|149020531|gb|EDL78336.1| mitochondrial ribosomal protein L4 (predicted), isoform CRA_b
[Rattus norvegicus]
Length = 294
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 124/213 (58%), Gaps = 7/213 (3%)
Query: 97 QDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSG 156
Q V + F E G L DVF R DI+H+V WQ ++ TKT +EVSG
Sbjct: 63 QAWVESLRGFEQERIGLAELHPDVFATTPRLDILHQVAVWQRNFKRISYAKTKTRAEVSG 122
Query: 157 TGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARA 215
G+KPW+QKG+GRARHG++R P +RGG HGP+ P S+ L KVR LGLK+AL+ +
Sbjct: 123 GGRKPWQQKGSGRARHGSIRSPIWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKL 182
Query: 216 AEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLK----LATQNLHYV 271
+ L + + LE+P+ +++ VLL D HE++ AT L+
Sbjct: 183 MQDDLHIVDSLELPTADPQYLTELAQYRHWGSSVLLVD--LTHEEMPKNVMAATSRLNSF 240
Query: 272 NVLPSVGLNVYSILQHDTLVMSRDAVNKIVDRM 304
N++P+VGLNVYS+L+H TLV++ +V + D++
Sbjct: 241 NLIPAVGLNVYSMLKHQTLVLTLPSVAFLEDKL 273
>gi|260438215|ref|ZP_05792031.1| ribosomal protein L4/L1 family protein [Butyrivibrio crossotus DSM
2876]
gi|292809407|gb|EFF68612.1| ribosomal protein L4/L1 family protein [Butyrivibrio crossotus DSM
2876]
Length = 206
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 122/200 (61%), Gaps = 2/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N + G M L VF V + ++H+ V QLA ++QGT S KT SEVSG G+K
Sbjct: 4 VSVYNIEGKVVGDMELNDAVFGVEVNTHLVHQAVVLQLANKRQGTQSAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ GG + PKPR ++ K+NKK + L LK L+ + AE K
Sbjct: 64 PWRQKGTGHARQGSTRSPQWTGGGIVFAPKPRDYSFKMNKKEKNLALKSVLTTKVAENKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + L KTK +VN +E K +++ D ++ + L+++N+ V + +N
Sbjct: 124 IVVDGLSFDEIKTKNMVNVLKNLEVKKALVVTDDD--NKNVTLSSRNIPGVKTAFTNTIN 181
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY IL++D +V+++D ++KI
Sbjct: 182 VYDILKYDKMVVAKDVISKI 201
>gi|307244773|ref|ZP_07526874.1| ribosomal protein L4/L1 family protein [Peptostreptococcus stomatis
DSM 17678]
gi|306491871|gb|EFM63923.1| ribosomal protein L4/L1 family protein [Peptostreptococcus stomatis
DSM 17678]
Length = 207
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 121/200 (60%), Gaps = 1/200 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I V N ++ G + L +F++ + +++ V+ QLA ++QGT S KT +EV G G+K
Sbjct: 4 INVLNVSGQNVGEIELNDSIFNIEVNAHVLYEAVKCQLANKRQGTQSAKTRAEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R Q+ GG PKPR ++ L KKVRRL +K ALS++ + ++
Sbjct: 64 PWRQKGTGRARQGSIRSVQWVGGGVAFAPKPRDYSYSLPKKVRRLAMKSALSSKVQDNEI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + L + + KTK +VN + + KKVL+ +K + +N+ NV LN
Sbjct: 124 IVLDALSLEAPKTKEMVNTFKNLNAAKKVLVVTAENDANIVK-SVRNIEGANVCHVSTLN 182
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY IL D+ +++ DAV K+
Sbjct: 183 VYDILNCDSFIITTDAVKKV 202
>gi|383865973|ref|XP_003708446.1| PREDICTED: 39S ribosomal protein L4, mitochondrial-like [Megachile
rotundata]
Length = 282
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 85/205 (41%), Positives = 117/205 (57%), Gaps = 6/205 (2%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L DVF R DIIH+ V+WQ R +TKT +EV G G+KPWRQKGTGRAR
Sbjct: 67 GLVTLHPDVFGAAPRIDIIHQNVQWQRMYRWVCYANTKTRAEVRGGGRKPWRQKGTGRAR 126
Query: 172 HGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPS 230
HG++R P +RGG HGP+ P H L R GL LS + A+ L + +LE+P+
Sbjct: 127 HGSIRSPLWRGGGVAHGPRSPTPHFYMLPFFTRVAGLTCTLSVKLAQDDLYIINELEIPT 186
Query: 231 HKTKFIVNYYNQMENTKKVLLCDGGCIHE-KLKLATQNLHYVNVLPSVGLNVYSILQHDT 289
+ + +I VL D I + AT + +VN++P+ GLNVYS+L+HDT
Sbjct: 187 NDSAYIKELIEARHWGPSVLFVDSEDIMAPNITEATDEIKHVNLMPAYGLNVYSMLKHDT 246
Query: 290 LVMSRDAV----NKIVDRMHTPINR 310
LV++ A +KI+ +H P NR
Sbjct: 247 LVLTERAARLIEDKILYNLHRPDNR 271
>gi|227499194|ref|ZP_03929329.1| 50S ribosomal protein L4/L1e [Acidaminococcus sp. D21]
gi|352685684|ref|YP_004897669.1| 50S ribosomal protein L4 [Acidaminococcus intestini RyC-MR95]
gi|226904641|gb|EEH90559.1| 50S ribosomal protein L4/L1e [Acidaminococcus sp. D21]
gi|350280339|gb|AEQ23529.1| 50S ribosomal protein L4/L1e [Acidaminococcus intestini RyC-MR95]
Length = 209
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 76/183 (41%), Positives = 118/183 (64%), Gaps = 4/183 (2%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
VF V + ++H+ V Q A +QGTH+TKT V G G+KPW+QKGTGRAR G++R P
Sbjct: 24 VFGVEFNEAVVHQAVVMQQANERQGTHATKTRGMVRGGGRKPWKQKGTGRARAGSVRSPL 83
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
+ GG T+ GP PRSHAI + +K RRL ++ ALS++ A+G L++ + L +KTK V
Sbjct: 84 WVGGGTIFGPSPRSHAIDMPRKARRLAIRCALSSKVADGSLVIVDGLSFADNKTKNTVEM 143
Query: 240 YNQME--NTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAV 297
E N K +++ DG +E ++L+++N+ V L + LNV+ IL + +++++DAV
Sbjct: 144 LKGFEASNKKALIITDGE--NENVELSSRNIEKVKALSNDCLNVFDILNAEKVLLAKDAV 201
Query: 298 NKI 300
+I
Sbjct: 202 ARI 204
>gi|297569421|ref|YP_003690765.1| ribosomal protein L4/L1e [Desulfurivibrio alkaliphilus AHT2]
gi|296925336|gb|ADH86146.1| ribosomal protein L4/L1e [Desulfurivibrio alkaliphilus AHT2]
Length = 207
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 126/207 (60%), Gaps = 2/207 (0%)
Query: 100 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
V V N E G + L +F V + ++H +VR Q A R+ GT TKT +VSG+GK
Sbjct: 3 VTEVYNIKKEKVGDVELDDALFGVEVNPHLLHDIVRMQRANRRAGTACTKTRKDVSGSGK 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
KPWRQKGTGRAR G+ + P +RGG T+ GP+PRS+A + +K R+LGL++ALS+R A+
Sbjct: 63 KPWRQKGTGRARAGSRKSPVWRGGGTVFGPRPRSYAFSMPRKARKLGLRMALSSRCADNL 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGL 279
L+V +D ++ KTK V + +++ E L+ +++N+ V+P+ GL
Sbjct: 123 LVVLDDFQLDEIKTKKFVEVMDGFSIDNALIVVPESI--ETLERSSRNVPGFKVMPTEGL 180
Query: 280 NVYSILQHDTLVMSRDAVNKIVDRMHT 306
NVY IL H +V+ + + ++ +R+ T
Sbjct: 181 NVYDILLHKHIVLLQPCIEQLRERLLT 207
>gi|256852037|ref|ZP_05557424.1| ribosomal protein L4/L1 [Lactobacillus jensenii 27-2-CHN]
gi|260661394|ref|ZP_05862307.1| ribosomal protein L4/L1 [Lactobacillus jensenii 115-3-CHN]
gi|256615449|gb|EEU20639.1| ribosomal protein L4/L1 [Lactobacillus jensenii 27-2-CHN]
gi|260547849|gb|EEX23826.1| ribosomal protein L4/L1 [Lactobacillus jensenii 115-3-CHN]
Length = 205
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 79/192 (41%), Positives = 118/192 (61%), Gaps = 3/192 (1%)
Query: 109 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTG 168
+D G + L +VF + ++++ V Q A +QGTH+TK S V G GKKPWRQKGTG
Sbjct: 12 KDAGEVTLNDNVFGIEPNENVVFDAVIRQRAGMRQGTHATKNRSAVRGGGKKPWRQKGTG 71
Query: 169 RARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEV 228
RAR G++R PQ+RGG T+ GP PRS+A L +KVRRL +K LS + + L++ + L +
Sbjct: 72 RARQGSIRAPQWRGGGTVFGPTPRSYAYSLPRKVRRLAIKSVLSQKLQDNNLIILDQLSL 131
Query: 229 PSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHD 288
+ KTK + KVL+ +E ++L+ +NL V V+P GLNV + +D
Sbjct: 132 DAPKTKEFKAVLGNLNVDSKVLVVSD---NENVQLSARNLENVKVVPVNGLNVVDAVNYD 188
Query: 289 TLVMSRDAVNKI 300
L++++DAV +I
Sbjct: 189 KLILTQDAVKRI 200
>gi|225707434|gb|ACO09563.1| Mitochondrial 39S ribosomal protein L4 [Osmerus mordax]
Length = 302
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 84/210 (40%), Positives = 128/210 (60%), Gaps = 2/210 (0%)
Query: 97 QDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSG 156
Q V + + +E G + L DVF +P R DI+H V WQ ++ +TK SEV G
Sbjct: 72 QTWVDTLVSHESEPLGLVDLHPDVFALPARIDILHEVELWQRNYKRISHANTKVRSEVRG 131
Query: 157 TGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARA 215
GKKPW QKG+GRARHG++R P +RGG HGP+ P S+ + KVR GLKIALS++
Sbjct: 132 GGKKPWNQKGSGRARHGSIRSPIWRGGGVSHGPRGPTSYYYMIPIKVRVQGLKIALSSKL 191
Query: 216 AEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDG-GCIHEKLKLATQNLHYVNVL 274
A+ L V + L +P+ +++V+ + VLL D + + + AT L VNV+
Sbjct: 192 AQNYLHVVDSLNIPTPDPQYLVDLIRYRYCGESVLLVDATDNLPDNILQATAGLKTVNVI 251
Query: 275 PSVGLNVYSILQHDTLVMSRDAVNKIVDRM 304
P++GLNV+S+L+H+ LV++ +AV + +++
Sbjct: 252 PAIGLNVHSMLKHEVLVLTLEAVKFLENKL 281
>gi|410454388|ref|ZP_11308327.1| 50S ribosomal protein L4 [Bacillus bataviensis LMG 21833]
gi|409932203|gb|EKN69170.1| 50S ribosomal protein L4 [Bacillus bataviensis LMG 21833]
Length = 207
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 82/203 (40%), Positives = 121/203 (59%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P N++ G + L VF + + ++ + Q A +QGTH TK SEV G
Sbjct: 1 MPKVALLNQNGSQVGEIELNEAVFGIEPNQHVLFEAIVMQRASLRQGTHKTKIRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG T+ GP PRS++ KL KKVRRL +K ALS++ E
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYSYKLPKKVRRLAIKSALSSKVLE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+LV E L + KTK + + KK L+ + E + L+ +N+ V V+ +
Sbjct: 121 ENILVLESLAFEAPKTKEFKSVLGGLSVEKKALIVTAD-LDENVALSARNIPGVTVVTAD 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
G+NV ++ HD L+M++ AV K+
Sbjct: 180 GINVLDVVNHDQLIMTKAAVEKV 202
>gi|210623189|ref|ZP_03293628.1| hypothetical protein CLOHIR_01578 [Clostridium hiranonis DSM 13275]
gi|210153726|gb|EEA84732.1| hypothetical protein CLOHIR_01578 [Clostridium hiranonis DSM 13275]
Length = 207
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 120/200 (60%), Gaps = 1/200 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I V N ++ G + L +F+V + + +++ V+ QLA R+QGT S KT +EV G G+K
Sbjct: 4 INVMNINGQNVGEIELCDSIFNVEVNEHVLYEAVKCQLANRRQGTQSAKTRAEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G+ R Q+ GG PKPRS+ L KKVRRL +K ALS++ ++
Sbjct: 64 PWKQKGTGRARQGSTRSVQWVGGGVAFAPKPRSYKYTLPKKVRRLAMKCALSSKVQNNEI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + L + + KTK V N ++ ++K L+ +E + + +N+ V LN
Sbjct: 124 IVLDALTMDAPKTKEFVAILNNIKASRKALVVTAE-KNENVIKSARNIEGVQTALVNTLN 182
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY IL HDT V++ DAV K+
Sbjct: 183 VYDILNHDTFVITTDAVKKV 202
>gi|260787918|ref|XP_002588998.1| hypothetical protein BRAFLDRAFT_124913 [Branchiostoma floridae]
gi|229274171|gb|EEN45009.1| hypothetical protein BRAFLDRAFT_124913 [Branchiostoma floridae]
Length = 264
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 84/205 (40%), Positives = 123/205 (60%), Gaps = 2/205 (0%)
Query: 108 NEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGT 167
+E G + L DVF R DI+HR VRWQ R+ +T +E+ G G+KPW QKGT
Sbjct: 38 DEKLGMVELHPDVFATHPRMDILHRCVRWQYLYRKINYDFARTRAEMRGGGRKPWPQKGT 97
Query: 168 GRARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL 226
GRARHG++R P + G HGP+ P S+ L K R LGLK+AL+ + ++G L + + L
Sbjct: 98 GRARHGSIRSPLWHMGGKCHGPRGPYSYYQYLPLKYRALGLKVALTVKHSQGDLHIVDTL 157
Query: 227 EVPSHKTKFIVNYYNQMENTKKVLLCD-GGCIHEKLKLATQNLHYVNVLPSVGLNVYSIL 285
E+P+ +++ + K VLL D I E + A+ L+ +NV+P VGLNVYS+L
Sbjct: 158 EIPTTDPEYLEDLVRYRNWGKSVLLVDMNEEISENVCEASAQLNTINVMPLVGLNVYSML 217
Query: 286 QHDTLVMSRDAVNKIVDRMHTPINR 310
+HDTLV++ V K+ +++ NR
Sbjct: 218 KHDTLVLTLPCVQKLENKLLYQDNR 242
>gi|205372068|ref|ZP_03224885.1| 50S ribosomal protein L4 [Bacillus coahuilensis m4-4]
Length = 207
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 80/189 (42%), Positives = 115/189 (60%), Gaps = 1/189 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +F + + ++ V Q A +QG H K SEV+G G+KPWRQKGTGRAR
Sbjct: 15 GDIELNDSIFGIEPNQSVMFDAVIMQRASLRQGNHKVKGRSEVAGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+RGG + GP PRS++ KL KKVRRL +K ALS + E ++V + L +
Sbjct: 75 QGSIRSPQWRGGGIVFGPTPRSYSYKLPKKVRRLAIKSALSTKVVEENIIVLDQLTFAAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KTK V + KVL+ G + E + L+ +N+ V V+PS G++V +L HD LV
Sbjct: 135 KTKEFVAVLKNLSLDNKVLVVTDG-LDENVALSARNIPGVTVVPSNGISVLDVLGHDKLV 193
Query: 292 MSRDAVNKI 300
M++ AV K+
Sbjct: 194 MTKAAVEKV 202
>gi|225717040|gb|ACO14366.1| Mitochondrial 39S ribosomal protein L4 [Esox lucius]
Length = 302
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 127/200 (63%), Gaps = 4/200 (2%)
Query: 108 NEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGT 167
+E G + L D+F VP R DI+H V WQ + ++ TK SEV G G+KPW+QKG+
Sbjct: 83 SEPLGLVDLHPDIFAVPARVDILHDVEMWQRSFKRISYAHTKVRSEVRGGGRKPWKQKGS 142
Query: 168 GRARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL 226
GRARHG++R P +RGG HGP+ P S+ L K+R GLKIALS++ A+ L V + L
Sbjct: 143 GRARHGSIRSPLWRGGGVSHGPRGPTSYYYMLPMKIRVQGLKIALSSKLAQDYLHVVDTL 202
Query: 227 EVPSHKTKFIVNYYNQMENTKKVLLCDGGC--IHEKLKLATQNLHYVNVLPSVGLNVYSI 284
+P+ +++++ + VL+ D C E + AT++L VNV+P++GLNV+S+
Sbjct: 203 NIPTPDPEYLMDLIRFRYWGESVLIVD-ACEEFPENILQATESLKTVNVIPAIGLNVHSM 261
Query: 285 LQHDTLVMSRDAVNKIVDRM 304
L+H+ LV++ +AV + +++
Sbjct: 262 LKHEVLVLTLEAVKFLENKL 281
>gi|336430425|ref|ZP_08610372.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 3_1_57FAA_CT1]
gi|336018234|gb|EGN47986.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 3_1_57FAA_CT1]
Length = 206
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 85/205 (41%), Positives = 125/205 (60%), Gaps = 12/205 (5%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G + L+ VF V + + ++H V WQLA ++QGT KT SEVSG G+K
Sbjct: 4 VAVFNMEGKEVGTLDLSDAVFGVEVNEHLVHMAVVWQLANKRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ GG + P PR ++ KLNKK +R LK AL++R E KL
Sbjct: 64 PWRQKGTGHARQGSTRSPQWTGGGVVFAPVPRDYSFKLNKKEKRAALKSALTSRVQENKL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTK--KVLLCDGGCIHEKLK---LATQNLHYVNVLP 275
+V ++L+ KTK N+ M+N K K L+ I+E K ++ +N+ VN
Sbjct: 124 IVVDELKFDEIKTK---NFKQVMDNLKVSKGLV----VINENDKNVVMSAKNMPTVNTTL 176
Query: 276 SVGLNVYSILQHDTLVMSRDAVNKI 300
+ LNVY +++ T+V+++DAV I
Sbjct: 177 TSTLNVYDVMKAGTVVLTKDAVKTI 201
>gi|414153573|ref|ZP_11409896.1| 50S ribosomal protein L4 [Desulfotomaculum hydrothermale Lam5 = DSM
18033]
gi|411454971|emb|CCO07800.1| 50S ribosomal protein L4 [Desulfotomaculum hydrothermale Lam5 = DSM
18033]
Length = 206
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 125/200 (62%), Gaps = 2/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N E G + L +VF + + ++H V QLA ++QGTH TKT +EVSG G+K
Sbjct: 4 VALYNVNGEQVGEVELKDEVFGIEPHESVLHDAVTMQLANQRQGTHDTKTRAEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R P +R G T+ GP PR ++ L KKVRRL LK ALS++ +
Sbjct: 64 PWRQKGTGRARVGSIRSPLWRKGGTIFGPHPRDYSFSLPKKVRRLALKSALSSKVKSNNI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + L + + KTK +V N + K +++ ++ ++ + +N+ V L + G+N
Sbjct: 124 IVLDALTIDAPKTKEMVRILNNLNANKALVVTAERDVN--VEKSARNIAGVKPLKAEGVN 181
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY +L++ LV+++DAV KI
Sbjct: 182 VYDLLKYTKLVITKDAVAKI 201
>gi|295702351|ref|YP_003595426.1| 50S ribosomal protein L4 [Bacillus megaterium DSM 319]
gi|384049268|ref|YP_005497285.1| 50S ribosomal protein L4 [Bacillus megaterium WSH-002]
gi|294800010|gb|ADF37076.1| 50S ribosomal protein L4 [Bacillus megaterium DSM 319]
gi|345446959|gb|AEN91976.1| 50S ribosomal protein L4 [Bacillus megaterium WSH-002]
Length = 207
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 81/203 (39%), Positives = 122/203 (60%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN E+ G + L VF + ++ + Q A ++QGT K SEV G
Sbjct: 1 MPKVALFNQNGENVGEIELQDAVFGIEPNNKVLFDAIVMQRASQRQGTSKVKNRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ KL KKVRRL +K ALS +A +
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPVPRSYSYKLPKKVRRLAIKSALSTKAQD 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++V E L + KTK +V + +K L+ ++E + L+ +N+ V V+ +
Sbjct: 121 NSIVVLEALSFDAPKTKEMVAVLKNLTVERKALVVTAD-LNENVALSARNIPGVTVVAAN 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
GL+V ++ HD LV+++DAV K+
Sbjct: 180 GLSVLDVMNHDKLVITKDAVEKV 202
>gi|357384712|ref|YP_004899436.1| 50S ribosomal protein L4 [Pelagibacterium halotolerans B2]
gi|351593349|gb|AEQ51686.1| LSU ribosomal protein L4p (L1e) [Pelagibacterium halotolerans B2]
Length = 206
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 84/207 (40%), Positives = 120/207 (57%), Gaps = 1/207 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + VT + G + L VF + R D+I R+VR+QL KR GTH K +EV+ TG
Sbjct: 1 MELQVTTLEGKSAGKVTLDDAVFGLEPRADLIQRMVRYQLLKRMSGTHDVKNRAEVAQTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK RQKG G ARHG+ R FRGG GP PRSHAI+L KKVR L LK ALSA+A G
Sbjct: 61 KKFGRQKGGGGARHGSRRSNIFRGGGRAFGPTPRSHAIELPKKVRALALKHALSAKAKAG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
L++ + + KT + + ++ L+ G + LA +N+ ++VLP+ G
Sbjct: 121 DLVIIDQATAEAPKTAALRAIFGKL-GFSNALIIGGTELDTNFALAARNIPQIDVLPAQG 179
Query: 279 LNVYSILQHDTLVMSRDAVNKIVDRMH 305
+NVY IL+ + LV+++DA+ + R
Sbjct: 180 INVYDILRREKLVLTKDALAALEGRFQ 206
>gi|161485627|ref|YP_064861.2| 50S ribosomal protein L4 [Desulfotalea psychrophila LSv54]
Length = 207
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 81/204 (39%), Positives = 120/204 (58%), Gaps = 2/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N NE + L +F+ +++ I+H VVR Q A ++ GT STKT EV G G K
Sbjct: 4 VSVVNTNNEKVDEIELNDAIFNREVKEYILHDVVRMQRAAKRAGTASTKTRVEVRGGGAK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G+ P +RGG GPKPR ++ KLN+KVR+ + +ALSAR EG L
Sbjct: 64 PWRQKGTGRARAGSRTSPLWRGGGVTFGPKPRDYSFKLNRKVRQQAVSMALSARFQEGNL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V ++ + + KTK + +E +++ D E L + +N+H +LP+ GLN
Sbjct: 124 IVLDNFIMDAIKTKEFASTMKTLELANALIVMDDAS--ENLSKSCRNVHGYRILPAEGLN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL H +V+ + + + R+
Sbjct: 182 VYDILLHKKVVLVKPVIESLEKRL 205
>gi|399055808|ref|ZP_10743458.1| 50S ribosomal protein L4, bacterial/organelle [Brevibacillus sp.
CF112]
gi|433543291|ref|ZP_20499701.1| 50S ribosomal protein L4 [Brevibacillus agri BAB-2500]
gi|398046671|gb|EJL39265.1| 50S ribosomal protein L4, bacterial/organelle [Brevibacillus sp.
CF112]
gi|432185420|gb|ELK42911.1| 50S ribosomal protein L4 [Brevibacillus agri BAB-2500]
Length = 207
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 122/203 (60%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNE---DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N+ G + LA VF + +++ + Q A ++QGTH K SEV G
Sbjct: 1 MPKVALYNQTGSQVGEIELADSVFGIEPNNAVLYDAIVMQQASQRQGTHDVKNRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ++GG + GP PR + KLN+KVRRL LK ALSA+
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWKGGGVVFGPTPRKYGYKLNRKVRRLALKSALSAKVQN 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+LLV + L + KTK + N ++ +KVL+ + + L+++N+ + +
Sbjct: 121 NELLVLDALNFAAPKTKEMTAVLNNLKVDRKVLIVT-SEFDQNVALSSRNIPGAKFVDAA 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
G+NV ++ HD +++++DAV K+
Sbjct: 180 GINVLDLVAHDKVIVTKDAVAKV 202
>gi|302871499|ref|YP_003840135.1| 50S ribosomal protein L4 [Caldicellulosiruptor obsidiansis OB47]
gi|312135495|ref|YP_004002833.1| 50S ribosomal protein L4/L1e [Caldicellulosiruptor owensensis OL]
gi|302574358|gb|ADL42149.1| ribosomal protein L4/L1e [Caldicellulosiruptor obsidiansis OB47]
gi|311775546|gb|ADQ05033.1| ribosomal protein L4/L1e [Caldicellulosiruptor owensensis OL]
Length = 208
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 123/202 (60%), Gaps = 4/202 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+PV N + G + L +F+VPI ++H+ V LA R+QGT + KT +EV G G+K
Sbjct: 4 VPVYNIEGQQIGEIELNDSIFNVPINTHVLHQAVVAHLANRRQGTFAAKTRAEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R P +R G + KPR +I L KKVRRL LK ALS++ E L
Sbjct: 64 PWRQKGTGRARQGSIRAPTWRKGGVVFAKKPRDFSIDLPKKVRRLALKCALSSKVKENNL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQ--MENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
+V + ++ +KTK ++ +EN K +++ +E L+ +T+N+ V L
Sbjct: 124 IVLDRWDMNQYKTKEVLRVLKNLGLENQKALIVIPEK--NEYLQKSTRNIPEVKTLQVGN 181
Query: 279 LNVYSILQHDTLVMSRDAVNKI 300
LNV+ IL++D V+ +DAV K+
Sbjct: 182 LNVFDILKYDKFVILQDAVKKV 203
>gi|260807182|ref|XP_002598388.1| hypothetical protein BRAFLDRAFT_128122 [Branchiostoma floridae]
gi|229283660|gb|EEN54400.1| hypothetical protein BRAFLDRAFT_128122 [Branchiostoma floridae]
Length = 264
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 84/205 (40%), Positives = 123/205 (60%), Gaps = 2/205 (0%)
Query: 108 NEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGT 167
+E G + L DVF R DI+HR VRWQ R+ +T +E+ G G+KPW QKGT
Sbjct: 38 DEKLGMVELHPDVFATHPRMDILHRCVRWQYLYRKINYDFARTRAEMRGGGRKPWPQKGT 97
Query: 168 GRARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL 226
GRARHG++R P + G HGP+ P S+ L K R LGLK+AL+ + ++G L + + L
Sbjct: 98 GRARHGSIRSPLWHMGGKCHGPRGPYSYYQYLPLKYRALGLKVALTVKHSQGDLHIVDRL 157
Query: 227 EVPSHKTKFIVNYYNQMENTKKVLLCD-GGCIHEKLKLATQNLHYVNVLPSVGLNVYSIL 285
E+P+ +++ + K VLL D I E + A+ L+ +NV+P VGLNVYS+L
Sbjct: 158 EIPTTDPEYLEDLVRYRNWGKSVLLVDMNEDIAENVCEASAQLNTINVMPLVGLNVYSML 217
Query: 286 QHDTLVMSRDAVNKIVDRMHTPINR 310
+HDTLV++ V K+ +++ NR
Sbjct: 218 KHDTLVLTLPCVQKLENKLLYQDNR 242
>gi|288574663|ref|ZP_06393020.1| ribosomal protein L4/L1e [Dethiosulfovibrio peptidovorans DSM
11002]
gi|288570404|gb|EFC91961.1| ribosomal protein L4/L1e [Dethiosulfovibrio peptidovorans DSM
11002]
Length = 206
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 82/200 (41%), Positives = 120/200 (60%), Gaps = 2/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I + E G + L+G+VFDVP+ +H+VV QLA R+QGTH TK +V G GKK
Sbjct: 4 IKLVTITGESTGELSLSGNVFDVPLHVPAMHQVVVAQLANRRQGTHCTKGRGDVRGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQK TGRARHG+ R P + GG HGPKPR++ K+NKKVRRL + ALS + + +L
Sbjct: 64 PWRQKHTGRARHGSSRSPIWVGGGVTHGPKPRNYRQKVNKKVRRLAICSALSQKIRDAQL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+ FE + TK + + + K +++ D E + ++T+N+ +VL +N
Sbjct: 124 MGFEAFSMEKPSTKIMKGLFQSLGVEKPLVIVD--HRDENISMSTRNIPGADVLHVDSIN 181
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY +L+H + +S AV K+
Sbjct: 182 VYDLLKHGHVFISAGAVKKL 201
>gi|301059224|ref|ZP_07200161.1| 50S ribosomal protein L4 [delta proteobacterium NaphS2]
gi|300446659|gb|EFK10487.1| 50S ribosomal protein L4 [delta proteobacterium NaphS2]
Length = 207
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 84/205 (40%), Positives = 123/205 (60%), Gaps = 2/205 (0%)
Query: 100 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
V+ V N E + L DVF VPI+K ++H+VV QLA + GT ++K + V G+G
Sbjct: 3 VLDVYNLQKEKVSEVELNKDVFSVPIKKHVLHQVVVAQLAGHRTGTAASKNRAAVKGSGA 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
K WRQKGTGRAR G P +GG GP PRS+ K+ KKVR+ L++AL+ + +
Sbjct: 63 KLWRQKGTGRARVGKASSPTRKGGGVAFGPSPRSYDQKIPKKVRKSALRMALTDKVQCEQ 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGL 279
L V +D +P KTK V NQ + K +++ + E L+ +++N+ + V+ S GL
Sbjct: 123 LFVIDDFTLPEIKTKHFVEAMNQFDVQKALIVTNEKS--ENLEKSSKNVPKIKVMRSEGL 180
Query: 280 NVYSILQHDTLVMSRDAVNKIVDRM 304
NVY IL+HDTL + R AV+KI + +
Sbjct: 181 NVYDILKHDTLFLERMAVDKIQEAL 205
>gi|195114622|ref|XP_002001866.1| GI14673 [Drosophila mojavensis]
gi|193912441|gb|EDW11308.1| GI14673 [Drosophila mojavensis]
Length = 911
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 80/195 (41%), Positives = 116/195 (59%), Gaps = 2/195 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G M L DVF R D+I + WQ R TKT +EV G G+KPW QKG GRAR
Sbjct: 696 GLMELHPDVFAAQPRVDVIQENIEWQRKYRYVSMAHTKTRAEVRGGGRKPWPQKGMGRAR 755
Query: 172 HGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPS 230
HG++R P F+GG +HGP+ P +H L R +GL LS + A+ L + ED+E+P+
Sbjct: 756 HGSIRSPLFKGGGVIHGPRSPTTHFYMLPFYKRVMGLTSTLSVKLAQDDLHIIEDVEIPT 815
Query: 231 HKTKFIVNYYNQMENTKKVLLCDGGCIH-EKLKLATQNLHYVNVLPSVGLNVYSILQHDT 289
+FI + + VL+ D + E + AT ++ YVN++P+ GLNVYS+L+HDT
Sbjct: 816 KDAQFIRDLIQERNWGPSVLIVDKHDVFPENICYATDSIGYVNLMPAYGLNVYSMLKHDT 875
Query: 290 LVMSRDAVNKIVDRM 304
LV++ +AV + +R+
Sbjct: 876 LVLTVEAVKHLEERL 890
>gi|289579144|ref|YP_003477771.1| 50S ribosomal protein L4/L1e [Thermoanaerobacter italicus Ab9]
gi|297545328|ref|YP_003677630.1| 50S ribosomal protein L4/L1e [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
gi|289528857|gb|ADD03209.1| ribosomal protein L4/L1e [Thermoanaerobacter italicus Ab9]
gi|296843103|gb|ADH61619.1| ribosomal protein L4/L1e [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
Length = 206
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 80/205 (39%), Positives = 127/205 (61%), Gaps = 3/205 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N E G + L VF VP+ ++H+ V LA ++QGTHSTKT EV G G+K
Sbjct: 4 VAVYNVKGEQVGEIELKDSVFGVPVNVPVMHQAVLNYLANQRQGTHSTKTRGEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+ G + GPKPR ++ KL KKV+RL LK ALS++ + ++
Sbjct: 64 PWRQKGTGRARQGSIRAPQWIKGGVVFGPKPRDYSYKLPKKVKRLALKSALSSKVRDNEI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V ++ ++ KTK +V +++ G + ++L+T+N+ V L + LN
Sbjct: 124 IVLDEFKLDQPKTKKVVELLKNFNVDSALIVVPEG--EKNVELSTRNIPGVKTLYANYLN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRMH 305
Y +L++D ++++DAV IV+ ++
Sbjct: 182 TYDVLKYDKFIITKDAVG-IVEEVY 205
>gi|81642546|sp|Q6AP70.1|RL4_DESPS RecName: Full=50S ribosomal protein L4
gi|50876014|emb|CAG35854.1| probable 50S ribosomal protein L4 [Desulfotalea psychrophila LSv54]
Length = 211
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 81/204 (39%), Positives = 120/204 (58%), Gaps = 2/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N NE + L +F+ +++ I+H VVR Q A ++ GT STKT EV G G K
Sbjct: 8 VSVVNTNNEKVDEIELNDAIFNREVKEYILHDVVRMQRAAKRAGTASTKTRVEVRGGGAK 67
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G+ P +RGG GPKPR ++ KLN+KVR+ + +ALSAR EG L
Sbjct: 68 PWRQKGTGRARAGSRTSPLWRGGGVTFGPKPRDYSFKLNRKVRQQAVSMALSARFQEGNL 127
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V ++ + + KTK + +E +++ D E L + +N+H +LP+ GLN
Sbjct: 128 IVLDNFIMDAIKTKEFASTMKTLELANALIVMDDAS--ENLSKSCRNVHGYRILPAEGLN 185
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL H +V+ + + + R+
Sbjct: 186 VYDILLHKKVVLVKPVIESLEKRL 209
>gi|125975385|ref|YP_001039295.1| 50S ribosomal protein L4 [Clostridium thermocellum ATCC 27405]
gi|256005328|ref|ZP_05430294.1| ribosomal protein L4/L1e [Clostridium thermocellum DSM 2360]
gi|281419347|ref|ZP_06250362.1| ribosomal protein L4/L1e [Clostridium thermocellum JW20]
gi|385777821|ref|YP_005686986.1| 50S ribosomal protein L4 [Clostridium thermocellum DSM 1313]
gi|419723227|ref|ZP_14250360.1| ribosomal protein L4/L1e [Clostridium thermocellum AD2]
gi|419727128|ref|ZP_14254134.1| ribosomal protein L4/L1e [Clostridium thermocellum YS]
gi|166234659|sp|A3DJH3.1|RL4_CLOTH RecName: Full=50S ribosomal protein L4
gi|125715610|gb|ABN54102.1| ribosomal protein L4/L1e [Clostridium thermocellum ATCC 27405]
gi|255990764|gb|EEU00880.1| ribosomal protein L4/L1e [Clostridium thermocellum DSM 2360]
gi|281406967|gb|EFB37230.1| ribosomal protein L4/L1e [Clostridium thermocellum JW20]
gi|316939501|gb|ADU73535.1| ribosomal protein L4/L1e [Clostridium thermocellum DSM 1313]
gi|380769533|gb|EIC03447.1| ribosomal protein L4/L1e [Clostridium thermocellum YS]
gi|380780692|gb|EIC10357.1| ribosomal protein L4/L1e [Clostridium thermocellum AD2]
Length = 208
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 82/192 (42%), Positives = 120/192 (62%), Gaps = 6/192 (3%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L D+F + + K IH+V+ QLA R+QGT STKT SEV G G+KPWRQKGTGRAR
Sbjct: 15 GEINLRDDIFGIEVNKHAIHQVIVNQLANRRQGTQSTKTKSEVRGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG++R Q+ G GPKPRS+ + KK+RRL LK ALS++ E +LLV + L
Sbjct: 75 HGSIRSAQWVKGGIALGPKPRSYKYAVPKKLRRLALKSALSSKVNENELLVLDSLNFDEI 134
Query: 232 KTKFIVNYYNQM---ENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHD 288
KTK + N + + T ++L D + ++L+ +N+ + L +NVY I++HD
Sbjct: 135 KTKQMANVLKNLKVNDTTAVLVLADK---NRNVELSARNIPGLKTLFVNTMNVYDIIRHD 191
Query: 289 TLVMSRDAVNKI 300
++++DAV K+
Sbjct: 192 KFIITKDAVAKV 203
>gi|375310806|ref|ZP_09776071.1| 50S ribosomal protein L4/L1e [Paenibacillus sp. Aloe-11]
gi|390456379|ref|ZP_10241907.1| 50S ribosomal protein L4 [Paenibacillus peoriae KCTC 3763]
gi|375077174|gb|EHS55417.1| 50S ribosomal protein L4/L1e [Paenibacillus sp. Aloe-11]
Length = 207
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 120/200 (60%), Gaps = 1/200 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N G + L VF + K ++H V QLA +QGTH K SEV G G+K
Sbjct: 4 VALLNISGSQVGEIELNDAVFGIEPNKHVLHDAVVMQLASLRQGTHKVKGRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G++R PQ+ GG T+ GP PRS+A KL KKVRRL +K ALS++ E ++
Sbjct: 64 PWKQKGTGRARQGSIRAPQWVGGGTVFGPTPRSYAYKLPKKVRRLAIKSALSSKVIENEI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + L + KTK N ++ +K L+ + + L+ +N+ V + + G+N
Sbjct: 124 IVLDALTLNGPKTKEFAAILNNLKADRKALIV-APSYDDNVALSARNIPGVKFVAADGIN 182
Query: 281 VYSILQHDTLVMSRDAVNKI 300
V +L HD L+++++AV K+
Sbjct: 183 VLDVLGHDKLIITKEAVQKV 202
>gi|312622046|ref|YP_004023659.1| 50S ribosomal protein L4/L1e [Caldicellulosiruptor kronotskyensis
2002]
gi|312202513|gb|ADQ45840.1| ribosomal protein L4/L1e [Caldicellulosiruptor kronotskyensis 2002]
Length = 208
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 124/202 (61%), Gaps = 4/202 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+PV N + G + L +F+VPI ++H+ V LA R+QGT + KT +EV G G+K
Sbjct: 4 VPVYNIEGQQIGEIELNDSIFNVPINNHVLHQAVVAHLANRRQGTFAAKTRAEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R P +R G + KPR +I+L KKV+RL LK ALS++ E L
Sbjct: 64 PWRQKGTGRARQGSIRAPTWRKGGVVFAKKPRDFSIELPKKVKRLALKCALSSKVKENNL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQ--MENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
+V + ++ +KTK ++ +EN K +++ +E L+ +T+N+ V L
Sbjct: 124 IVLDRWDMNQYKTKEVLRVLKNLGLENQKALIVIPEK--NEYLQKSTKNIPEVKTLQVGN 181
Query: 279 LNVYSILQHDTLVMSRDAVNKI 300
LNV+ IL++D V+ +DAV K+
Sbjct: 182 LNVFDILKYDKFVILQDAVKKV 203
>gi|218885188|ref|YP_002434509.1| 50S ribosomal protein L4 [Desulfovibrio vulgaris str. 'Miyazaki F']
gi|226730654|sp|B8DN97.1|RL4_DESVM RecName: Full=50S ribosomal protein L4
gi|218756142|gb|ACL07041.1| ribosomal protein L4/L1e [Desulfovibrio vulgaris str. 'Miyazaki F']
Length = 206
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 125/205 (60%), Gaps = 2/205 (0%)
Query: 100 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
V+ V + ++ G + LA +VF+V ++ +I++ VVR A + GTH+TKT + VSG G
Sbjct: 3 VVKVYDQNKKEAGELTLAPEVFEVEVKPEILNLVVRAHRAGLRSGTHATKTRAFVSGGGA 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
KPWRQKGTGRAR G+ R P +RGG + GP+PR + K+NKKVR+L LK+ALS+R A
Sbjct: 63 KPWRQKGTGRARSGSNRSPIWRGGAVIFGPQPREYGFKVNKKVRQLALKMALSSRLAGEN 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGL 279
L+V + +E+P KTK + K +++ L L+ +N+ + ++ + L
Sbjct: 123 LMVVKGIELPEIKTKLFAKVAGALGLEKALVIT--AEADTTLALSARNIPGITLITADQL 180
Query: 280 NVYSILQHDTLVMSRDAVNKIVDRM 304
+VY IL+H LVM AV + R+
Sbjct: 181 SVYEILKHPKLVMFEGAVESVQARL 205
>gi|146297284|ref|YP_001181055.1| 50S ribosomal protein L4 [Caldicellulosiruptor saccharolyticus DSM
8903]
gi|166234648|sp|A4XLS9.1|RL4_CALS8 RecName: Full=50S ribosomal protein L4
gi|145410860|gb|ABP67864.1| ribosomal protein L4/L1e [Caldicellulosiruptor saccharolyticus DSM
8903]
Length = 208
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 123/202 (60%), Gaps = 4/202 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+PV N + G + L +F+VPI ++H+ V LA R+QGT + KT +EV G G+K
Sbjct: 4 VPVYNIEGQQIGEIELNDSIFNVPINTHVLHQAVVAHLANRRQGTFAAKTRAEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R P +R G + KPR +I L KKVRRL LK ALS++ E L
Sbjct: 64 PWRQKGTGRARQGSIRAPTWRKGGVVFAKKPRDFSIDLPKKVRRLALKCALSSKVKENNL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQ--MENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
+V + ++ ++TK ++ +EN K +++ +E L+ +T+N+ V L
Sbjct: 124 IVLDKWDMNQYRTKEVIRVLKNLGLENEKALIVIPEK--NEYLQKSTKNIPEVKTLQVGN 181
Query: 279 LNVYSILQHDTLVMSRDAVNKI 300
LNV+ IL++D ++ +DAV K+
Sbjct: 182 LNVFDILKYDKFIILQDAVKKV 203
>gi|116873997|ref|YP_850778.1| 50S ribosomal protein L4 [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|123461454|sp|A0ALW7.1|RL4_LISW6 RecName: Full=50S ribosomal protein L4
gi|116742875|emb|CAK21999.1| ribosomal protein L4 [Listeria welshimeri serovar 6b str. SLCC5334]
Length = 207
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 116/191 (60%), Gaps = 1/191 (0%)
Query: 110 DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGR 169
+ G + L VF + + ++ V+ Q A +QGTH K SEV G G+KPWRQKGTGR
Sbjct: 13 NAGEITLNDTVFGIEPNEKVVVDVILSQRASLRQGTHKVKNRSEVRGGGRKPWRQKGTGR 72
Query: 170 ARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVP 229
AR G++R PQ+RGG + GP PRS+A KL KKVRRL +K LS++ E KL+V E L
Sbjct: 73 ARQGSIRSPQWRGGGVVFGPTPRSYAYKLPKKVRRLAIKSILSSKVNEEKLVVLEGLTFD 132
Query: 230 SHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDT 289
+ KTK + + K L+ G E ++L+ +NL + V+P+ ++V + +HD
Sbjct: 133 APKTKEFATFLKNISVDTKALIVVAGE-SENVELSARNLQGITVIPAESISVLEVAKHDK 191
Query: 290 LVMSRDAVNKI 300
L++++ AV K+
Sbjct: 192 LIITKAAVEKV 202
>gi|384500965|gb|EIE91456.1| hypothetical protein RO3G_16167 [Rhizopus delemar RA 99-880]
Length = 247
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 82/195 (42%), Positives = 124/195 (63%), Gaps = 4/195 (2%)
Query: 108 NEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGT 167
NE + L +VF VPIR+DI+HRVV WQ +QGT STKT +EVSGTGKK QKG
Sbjct: 48 NEPVSIINLEKEVFGVPIRRDILHRVVVWQRDSMRQGTSSTKTRAEVSGTGKKAAPQKGR 107
Query: 168 GRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLE 227
G+AR G ++ P FR G GPKPR H+ L +KV+ LGL++ALSA+ A+ +L+V E L+
Sbjct: 108 GKARVGDMKAPHFRSGGIAFGPKPRDHSTDLPRKVQDLGLRVALSAKYAQDQLIVVESLQ 167
Query: 228 -VPSHKTKFIVNYY-NQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSIL 285
+ SHKT+ + + N E++K +++ D +++ L++A +NL V+ NV +L
Sbjct: 168 NLESHKTRDLADIIKNSYESSKILIIIDE--LNKNLEMAARNLPNCEVIYVEETNVLDLL 225
Query: 286 QHDTLVMSRDAVNKI 300
+D L++ + + +
Sbjct: 226 TYDKLLVEKSVIETL 240
>gi|317050529|ref|YP_004111645.1| 50S ribosomal protein L4/L1e [Desulfurispirillum indicum S5]
gi|316945613|gb|ADU65089.1| ribosomal protein L4/L1e [Desulfurispirillum indicum S5]
Length = 207
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 116/201 (57%), Gaps = 1/201 (0%)
Query: 100 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
V+ V N NE G + L+ ++F ++ ++H VV QLA R+QGTH+ K S VSG G
Sbjct: 3 VVSVINVNNEKVGEVALSDELFGGAVKPHLMHEVVVAQLAARRQGTHAVKNRSAVSGGGS 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
KPWRQKGTGRAR GT R P +R G + GP PRS+ K+NKKVRR L ALS +AA+
Sbjct: 63 KPWRQKGTGRARAGTSRSPLWRTGGVIFGPTPRSYEKKVNKKVRRQALVSALSEKAAQQS 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGL 279
++VF+D + S KTK + + +KVL K LA +NL +V ++ GL
Sbjct: 123 IVVFDDFALESPKTKLANQVFAKCSLDRKVLFVVDEMDSPK-ALAMRNLPFVKLIKPEGL 181
Query: 280 NVYSILQHDTLVMSRDAVNKI 300
NVY ++ L + ++
Sbjct: 182 NVYDVVNAKVLAFEKSTAERL 202
>gi|269792793|ref|YP_003317697.1| 50S ribosomal protein L4 [Thermanaerovibrio acidaminovorans DSM
6589]
gi|269100428|gb|ACZ19415.1| ribosomal protein L4/L1e [Thermanaerovibrio acidaminovorans DSM
6589]
Length = 208
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 86/200 (43%), Positives = 120/200 (60%), Gaps = 7/200 (3%)
Query: 104 TNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWR 163
NF E G + L+ VF P+ +H+VV LA + GTH TK EVSG G+KPWR
Sbjct: 7 VNFNGEVIGEVELSEAVFGAPVHVPAMHQVVVAHLANCRVGTHDTKDRGEVSGGGRKPWR 66
Query: 164 QKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVF 223
QK TGRAR G++R P + GG HGP PR + K+NKKVRRL L+ AL+ +A E +LV
Sbjct: 67 QKHTGRARQGSIRSPLWVGGGVAHGPHPRDYHQKVNKKVRRLALRSALTLKAKEDNMLVL 126
Query: 224 EDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHE---KLKLATQNLHYVNVLPSVGLN 280
E E+ + KTK ++++ +++ KK LL IHE ++ + N+ VL LN
Sbjct: 127 ERFELEAPKTKAMISFLERVQGGKKPLL----VIHEPDHNVRKSASNIPGAMVLHVDSLN 182
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY IL HD ++++ +AV KI
Sbjct: 183 VYDILNHDRMIVTAEAVRKI 202
>gi|260432430|ref|ZP_05786401.1| ribosomal protein, L4/L1 family [Silicibacter lacuscaerulensis
ITI-1157]
gi|260416258|gb|EEX09517.1| ribosomal protein, L4/L1 family [Silicibacter lacuscaerulensis
ITI-1157]
Length = 205
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 85/206 (41%), Positives = 118/206 (57%), Gaps = 2/206 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + V + G + L +F + R DI+HRVVRWQ Q GTH KT SE S +
Sbjct: 1 MKLDVIKLDGKKAGDIELDEALFGLEPRADILHRVVRWQRNNAQAGTHKVKTRSETSYST 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK +RQKGTG ARHG P FR G GP PRSH L KK R+LGL+ ALSA+A G
Sbjct: 61 KKIYRQKGTGGARHGDRNAPIFRKGGVYKGPTPRSHGHDLPKKFRKLGLRHALSAKAKAG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
+L+V + E KT + + K+ L+ DG ++E A +N+ +++LPS+G
Sbjct: 121 ELVVIDAAEAEG-KTAALAKQVANL-GWKRALVIDGATVNEGFARAARNIEGLDILPSMG 178
Query: 279 LNVYSILQHDTLVMSRDAVNKIVDRM 304
NVY IL+ DTLV+++ V + R+
Sbjct: 179 ANVYDILKRDTLVLTKAGVEALEARL 204
>gi|94266252|ref|ZP_01289959.1| Ribosomal protein L4/L1e [delta proteobacterium MLMS-1]
gi|93453178|gb|EAT03642.1| Ribosomal protein L4/L1e [delta proteobacterium MLMS-1]
Length = 207
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 126/207 (60%), Gaps = 5/207 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+ VT +N K G + L + + + ++H +VR Q A R+ GT +TKT EVSG+
Sbjct: 1 MAVTEIYNTSKEKVGEIDLNDQLVKLEVNPHLLHDIVRMQRANRRAGTAATKTRKEVSGS 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
KKPWRQKGTGRAR GT + P +RGG T+ GP+PR ++ ++ +K RRLGL++A+SAR E
Sbjct: 61 SKKPWRQKGTGRARAGTRKSPVWRGGGTVFGPQPRDYSFRMPRKARRLGLRMAISARYQE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
LLV ED ++ KTK V + +++ E L+ +++N+ VLP+
Sbjct: 121 DMLLVLEDFQLDEIKTKKFVEVMDNFAIDNALIVVAERL--ENLERSSRNVPGFKVLPAE 178
Query: 278 GLNVYSILQHDTLVMSRDAVNKIVDRM 304
GLNVY IL H +++ + +V ++ +R+
Sbjct: 179 GLNVYDILLHKHIILLKPSVGQLEERL 205
>gi|323141357|ref|ZP_08076248.1| 50S ribosomal protein L4 [Phascolarctobacterium succinatutens YIT
12067]
gi|322414106|gb|EFY04934.1| 50S ribosomal protein L4 [Phascolarctobacterium succinatutens YIT
12067]
Length = 211
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 122/202 (60%), Gaps = 4/202 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + G + L VF + ++H+ V QLA ++QGT +TKT + V G G+K
Sbjct: 7 LSVYDLSGAQTGEIELNDSVFGAEFNEAVVHQAVVMQLANQRQGTSATKTRAMVRGGGRK 66
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G+ R P + GG T GP+PRS+A K+ +K RRL L ALSA+ A G+L
Sbjct: 67 PWKQKGTGRARCGSNRSPVWVGGGTTFGPQPRSYAKKMPRKARRLALCCALSAKVAAGEL 126
Query: 221 LVFEDLEVPSHKTKFIVNYYNQME--NTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
+V E L + KTK + + E +TK +L+ DG +E + L+ +N+ V + ++G
Sbjct: 127 VVVEGLAFDAPKTKQVASLLKAFEAVDTKALLITDGS--NENVALSARNMPKVTTITNMG 184
Query: 279 LNVYSILQHDTLVMSRDAVNKI 300
LN + IL + +++DAV KI
Sbjct: 185 LNCFDILNSKKVFLAKDAVEKI 206
>gi|218135280|ref|ZP_03464084.1| hypothetical protein BACPEC_03185 [[Bacteroides] pectinophilus ATCC
43243]
gi|217990665|gb|EEC56676.1| 50S ribosomal protein L4 [[Bacteroides] pectinophilus ATCC 43243]
Length = 206
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 84/202 (41%), Positives = 123/202 (60%), Gaps = 6/202 (2%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G + L +F V I + ++H V QLA +QGT KT SEVSG G+K
Sbjct: 4 VSVYNIEGKEVGSLELNDAIFGVEINEHLVHMAVVQQLANNRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ GG + P PR ++ K+NKK +R LK AL++R + K+
Sbjct: 64 PWRQKGTGHARQGSTRAPQWTGGGVVFAPTPRDYSFKMNKKEKRAALKSALTSRVVDSKI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTK--KVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
+V ++++ KTK N+ N M+N K K L+ G + L+ +N+ V V
Sbjct: 124 VVLDEIKFNEIKTK---NFANVMKNLKLDKALMVIGDN-DANVILSARNIPDVKVSQPNT 179
Query: 279 LNVYSILQHDTLVMSRDAVNKI 300
+NVY IL++DTLV+++DAV KI
Sbjct: 180 INVYDILKYDTLVVTKDAVAKI 201
>gi|342215804|ref|ZP_08708451.1| 50S ribosomal protein L4 [Peptoniphilus sp. oral taxon 375 str.
F0436]
gi|341586694|gb|EGS30094.1| 50S ribosomal protein L4 [Peptoniphilus sp. oral taxon 375 str.
F0436]
Length = 206
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 119/185 (64%), Gaps = 1/185 (0%)
Query: 116 LAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTL 175
L D+FDV + + ++ VV+ LA R+QGT S KT +EV G G+KPWRQKGTGRAR G++
Sbjct: 19 LKKDIFDVEVNEHAVYLVVKNILANRRQGTQSAKTRAEVRGGGRKPWRQKGTGRARQGSI 78
Query: 176 RGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKF 235
R PQ++GG + PKPR ++ KKV+RL L+ L+++ E +L++ + L++ KTK
Sbjct: 79 RSPQWKGGGVVFAPKPRDYSYTTPKKVKRLALRSVLTSKVQENELILVDALKLEEAKTKA 138
Query: 236 IVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRD 295
+ + KK L+ G +E + A +N+ V VL +NVY +L++D+L++ ++
Sbjct: 139 MAQALKALNAAKKSLILVGEG-NESVARAAKNIAGVKVLNIQSINVYDLLKYDSLILDQE 197
Query: 296 AVNKI 300
A+NKI
Sbjct: 198 ALNKI 202
>gi|392392082|ref|YP_006428684.1| 50S ribosomal protein L4 [Desulfitobacterium dehalogenans ATCC
51507]
gi|390523160|gb|AFL98890.1| 50S ribosomal protein L4, bacterial/organelle [Desulfitobacterium
dehalogenans ATCC 51507]
Length = 207
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 82/199 (41%), Positives = 117/199 (58%), Gaps = 1/199 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + L VF + ++H+ V QLA +++GTHST EV G G+K
Sbjct: 4 VQVVNMQGSSVGELELNEYVFGIEPNIHVMHQAVVGQLASQRRGTHSTLLRGEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R P +RGG + GPKPR + L KKVRRL L+ ALS++ E KL
Sbjct: 64 PWRQKGTGRARAGSIRSPLWRGGAVLFGPKPRKYGFSLPKKVRRLALRSALSSKVNEQKL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V EDL + KT+ +V + +KK L+ I E ++ + +N+ V G+N
Sbjct: 124 IVLEDLSLNEAKTREMVKVLQALNVSKKALIVTDEFI-ETIERSARNIVGVKTTAVEGMN 182
Query: 281 VYSILQHDTLVMSRDAVNK 299
VY +L D +VM++ AV K
Sbjct: 183 VYDLLNSDVIVMTKAAVTK 201
>gi|238855069|ref|ZP_04645397.1| ribosomal protein L4/L1 family protein [Lactobacillus jensenii
269-3]
gi|238832313|gb|EEQ24622.1| ribosomal protein L4/L1 family protein [Lactobacillus jensenii
269-3]
Length = 205
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 79/192 (41%), Positives = 117/192 (60%), Gaps = 3/192 (1%)
Query: 109 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTG 168
+D G + L +VF + ++++ V Q A +QGTH+TK S V G GKKPWRQKGTG
Sbjct: 12 KDAGEVTLNDNVFGIEPNENVVFDAVIRQRAGMRQGTHATKNRSAVRGGGKKPWRQKGTG 71
Query: 169 RARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEV 228
RAR G++R PQ+RGG T+ GP PRS+A L +K RRL +K LS + + L+V + L +
Sbjct: 72 RARQGSIRAPQWRGGGTVFGPTPRSYAYSLPRKARRLAIKSVLSQKLQDNNLIVLDQLSL 131
Query: 229 PSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHD 288
+ KTK + KVL+ +E ++L+ +NL V V+P GLNV + +D
Sbjct: 132 DAPKTKEFKAVLGNLNVDSKVLVV---SDNENVQLSARNLENVKVVPVNGLNVVDAVNYD 188
Query: 289 TLVMSRDAVNKI 300
L++++DAV +I
Sbjct: 189 KLILTQDAVKRI 200
>gi|168181865|ref|ZP_02616529.1| 50S ribosomal protein L4 [Clostridium botulinum Bf]
gi|237796941|ref|YP_002864493.1| 50S ribosomal protein L4 [Clostridium botulinum Ba4 str. 657]
gi|259491549|sp|C3KVQ0.1|RL4_CLOB6 RecName: Full=50S ribosomal protein L4
gi|182674730|gb|EDT86691.1| 50S ribosomal protein L4 [Clostridium botulinum Bf]
gi|229261648|gb|ACQ52681.1| 50S ribosomal protein L4 [Clostridium botulinum Ba4 str. 657]
Length = 206
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 127/203 (62%), Gaps = 5/203 (2%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + FN E G + LA VF V + +H+VV+ LA ++QGT S KT +EVSG
Sbjct: 1 MPKVDLFNQNGEKVGDLQLADSVFGVEVNTYAMHQVVKALLANKRQGTQSAKTRAEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G KPWRQKGTGRAR G++R PQ+ G + PKPR + + + K ++++ +K AL+++ E
Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIHGGIVFAPKPRDYRMSIPKSMKKVAIKSALTSKVNE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++V +D+++ + KTK +V N N KK L+ E + + +N+ V ++P
Sbjct: 121 KLMVVVDDIKLETPKTKEVVKMLNAF-NAKKTLIITNNA-EENVYKSARNIEGVQIIPVN 178
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
+NVY IL++D +V+++DAV+KI
Sbjct: 179 NINVYDILKYDKVVITKDAVSKI 201
>gi|16801841|ref|NP_472109.1| 50S ribosomal protein L4 [Listeria innocua Clip11262]
gi|16804669|ref|NP_466154.1| 50S ribosomal protein L4 [Listeria monocytogenes EGD-e]
gi|46908803|ref|YP_015192.1| 50S ribosomal protein L4 [Listeria monocytogenes serotype 4b str.
F2365]
gi|217966170|ref|YP_002351848.1| 50S ribosomal protein L4 [Listeria monocytogenes HCC23]
gi|226225176|ref|YP_002759283.1| ribosomal protein L4 [Listeria monocytogenes serotype 4b str. CLIP
80459]
gi|254825008|ref|ZP_05230009.1| ribosomal protein L4 [Listeria monocytogenes FSL J1-194]
gi|254829080|ref|ZP_05233767.1| ribosomal protein L4 [Listeria monocytogenes FSL N3-165]
gi|254854163|ref|ZP_05243511.1| ribosomal protein L4 [Listeria monocytogenes FSL R2-503]
gi|254912876|ref|ZP_05262888.1| 50S ribosomal protein L4 [Listeria monocytogenes J2818]
gi|254931099|ref|ZP_05264458.1| ribosomal protein L4 [Listeria monocytogenes HPB2262]
gi|254937256|ref|ZP_05268953.1| ribosomal protein L4 [Listeria monocytogenes F6900]
gi|254991853|ref|ZP_05274043.1| 50S ribosomal protein L4 [Listeria monocytogenes FSL J2-064]
gi|255017640|ref|ZP_05289766.1| 50S ribosomal protein L4 [Listeria monocytogenes FSL F2-515]
gi|255022701|ref|ZP_05294687.1| 50S ribosomal protein L4 [Listeria monocytogenes FSL J1-208]
gi|255027145|ref|ZP_05299131.1| 50S ribosomal protein L4 [Listeria monocytogenes FSL J2-003]
gi|255029694|ref|ZP_05301645.1| 50S ribosomal protein L4 [Listeria monocytogenes LO28]
gi|255519641|ref|ZP_05386878.1| 50S ribosomal protein L4 [Listeria monocytogenes FSL J1-175]
gi|284800483|ref|YP_003412348.1| 50S ribosomal protein L4 [Listeria monocytogenes 08-5578]
gi|284993669|ref|YP_003415437.1| 50S ribosomal protein L4 [Listeria monocytogenes 08-5923]
gi|290891816|ref|ZP_06554813.1| ribosomal protein L4 [Listeria monocytogenes FSL J2-071]
gi|300763618|ref|ZP_07073616.1| hypothetical protein LMHG_10847 [Listeria monocytogenes FSL N1-017]
gi|347549932|ref|YP_004856260.1| putative 50S ribosomal protein L4 [Listeria ivanovii subsp.
ivanovii PAM 55]
gi|386009410|ref|YP_005927688.1| rplD [Listeria monocytogenes L99]
gi|386028030|ref|YP_005948806.1| 50S ribosomal protein L4 [Listeria monocytogenes M7]
gi|386044939|ref|YP_005963744.1| 50S ribosomal protein L4/L1 [Listeria monocytogenes 10403S]
gi|386048362|ref|YP_005966694.1| 50S ribosomal protein L4/L1 [Listeria monocytogenes J0161]
gi|386051603|ref|YP_005969594.1| 50S ribosomal protein L4/L1 family [Listeria monocytogenes FSL
R2-561]
gi|386054820|ref|YP_005972378.1| 50S ribosomal protein L4/L1 [Listeria monocytogenes Finland 1998]
gi|386733316|ref|YP_006206812.1| 50S ribosomal protein L4 [Listeria monocytogenes 07PF0776]
gi|404282197|ref|YP_006683095.1| 50S ribosomal protein L4 [Listeria monocytogenes SLCC2755]
gi|404285127|ref|YP_006686024.1| 50S ribosomal protein L4 [Listeria monocytogenes SLCC2372]
gi|404288011|ref|YP_006694597.1| 50S ribosomal protein L4 [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|404409011|ref|YP_006691726.1| 50S ribosomal protein L4 [Listeria monocytogenes SLCC2376]
gi|404411881|ref|YP_006697469.1| 50S ribosomal protein L4 [Listeria monocytogenes SLCC5850]
gi|404414707|ref|YP_006700294.1| 50S ribosomal protein L4 [Listeria monocytogenes SLCC7179]
gi|405750976|ref|YP_006674442.1| 50S ribosomal protein L4 [Listeria monocytogenes ATCC 19117]
gi|405753838|ref|YP_006677303.1| 50S ribosomal protein L4 [Listeria monocytogenes SLCC2378]
gi|405756751|ref|YP_006680215.1| 50S ribosomal protein L4 [Listeria monocytogenes SLCC2540]
gi|405759684|ref|YP_006688960.1| 50S ribosomal protein L4 [Listeria monocytogenes SLCC2479]
gi|406705366|ref|YP_006755720.1| ribosomal protein L4 [Listeria monocytogenes L312]
gi|417318611|ref|ZP_12105186.1| 50S ribosomal protein L4 [Listeria monocytogenes J1-220]
gi|422810667|ref|ZP_16859078.1| 50S ribosomal protein L4 [Listeria monocytogenes FSL J1-208]
gi|423101346|ref|ZP_17089050.1| 50S ribosomal protein L4 [Listeria innocua ATCC 33091]
gi|424715441|ref|YP_007016156.1| 50S ribosomal protein L4 [Listeria monocytogenes serotype 4b str.
LL195]
gi|424824381|ref|ZP_18249394.1| 50S ribosomal protein L4 [Listeria monocytogenes str. Scott A]
gi|46577145|sp|P61054.1|RL4_LISIN RecName: Full=50S ribosomal protein L4
gi|46577146|sp|P61055.1|RL4_LISMO RecName: Full=50S ribosomal protein L4
gi|67461151|sp|Q71WE7.1|RL4_LISMF RecName: Full=50S ribosomal protein L4
gi|254803741|sp|B8DB09.1|RL4_LISMH RecName: Full=50S ribosomal protein L4
gi|259491564|sp|C1KZH9.1|RL4_LISMC RecName: Full=50S ribosomal protein L4
gi|16412119|emb|CAD00709.1| ribosomal protein L4 [Listeria monocytogenes EGD-e]
gi|16415316|emb|CAC98006.1| ribosomal protein L4 [Listeria innocua Clip11262]
gi|46882076|gb|AAT05369.1| ribosomal protein L4 [Listeria monocytogenes serotype 4b str.
F2365]
gi|217335440|gb|ACK41234.1| ribosomal protein L4/L1 family [Listeria monocytogenes HCC23]
gi|225877638|emb|CAS06352.1| ribosomal protein L4 [Listeria monocytogenes serotype 4b str. CLIP
80459]
gi|258601490|gb|EEW14815.1| ribosomal protein L4 [Listeria monocytogenes FSL N3-165]
gi|258607555|gb|EEW20163.1| ribosomal protein L4 [Listeria monocytogenes FSL R2-503]
gi|258609862|gb|EEW22470.1| ribosomal protein L4 [Listeria monocytogenes F6900]
gi|284056045|gb|ADB66986.1| 50S ribosomal protein L4 [Listeria monocytogenes 08-5578]
gi|284059136|gb|ADB70075.1| 50S ribosomal protein L4 [Listeria monocytogenes 08-5923]
gi|290558410|gb|EFD91927.1| ribosomal protein L4 [Listeria monocytogenes FSL J2-071]
gi|293582646|gb|EFF94678.1| ribosomal protein L4 [Listeria monocytogenes HPB2262]
gi|293590875|gb|EFF99209.1| 50S ribosomal protein L4 [Listeria monocytogenes J2818]
gi|293594249|gb|EFG02010.1| ribosomal protein L4 [Listeria monocytogenes FSL J1-194]
gi|300515895|gb|EFK42944.1| hypothetical protein LMHG_10847 [Listeria monocytogenes FSL N1-017]
gi|307572220|emb|CAR85399.1| rplD [Listeria monocytogenes L99]
gi|328469804|gb|EGF40721.1| 50S ribosomal protein L4 [Listeria monocytogenes J1-220]
gi|332313061|gb|EGJ26156.1| 50S ribosomal protein L4 [Listeria monocytogenes str. Scott A]
gi|336024611|gb|AEH93748.1| ribosomal protein L4 [Listeria monocytogenes M7]
gi|345535353|gb|AEO04794.1| 50S ribosomal protein L4/L1 [Listeria monocytogenes J0161]
gi|345538173|gb|AEO07613.1| 50S ribosomal protein L4/L1 [Listeria monocytogenes 10403S]
gi|346425449|gb|AEO26974.1| ribosomal protein L4/L1 family [Listeria monocytogenes FSL R2-561]
gi|346647471|gb|AEO40096.1| 50S ribosomal protein L4/L1 [Listeria monocytogenes Finland 1998]
gi|346983003|emb|CBW87040.1| Putative ribosomal protein L4 [Listeria ivanovii subsp. ivanovii
PAM 55]
gi|370792132|gb|EHN60023.1| 50S ribosomal protein L4 [Listeria innocua ATCC 33091]
gi|378750872|gb|EHY61463.1| 50S ribosomal protein L4 [Listeria monocytogenes FSL J1-208]
gi|384392074|gb|AFH81144.1| 50S ribosomal protein L4 [Listeria monocytogenes 07PF0776]
gi|404220176|emb|CBY71540.1| ribosomal protein L4 [Listeria monocytogenes ATCC 19117]
gi|404223038|emb|CBY74401.1| ribosomal protein L4 [Listeria monocytogenes SLCC2378]
gi|404225951|emb|CBY77313.1| ribosomal protein L4 [Listeria monocytogenes SLCC2540]
gi|404228832|emb|CBY50237.1| ribosomal protein L4 [Listeria monocytogenes SLCC2755]
gi|404231707|emb|CBY53111.1| ribosomal protein L4 [Listeria monocytogenes SLCC5850]
gi|404234629|emb|CBY56032.1| ribosomal protein L4 [Listeria monocytogenes SLCC2372]
gi|404237566|emb|CBY58968.1| ribosomal protein L4 [Listeria monocytogenes SLCC2479]
gi|404240406|emb|CBY61807.1| ribosomal protein L4 [Listeria monocytogenes SLCC7179]
gi|404243160|emb|CBY64560.1| ribosomal protein L4 [Listeria monocytogenes SLCC2376]
gi|404246940|emb|CBY05165.1| ribosomal protein L4 [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|406362396|emb|CBY68669.1| ribosomal protein L4 [Listeria monocytogenes L312]
gi|424014625|emb|CCO65165.1| 50S ribosomal protein L4 [Listeria monocytogenes serotype 4b str.
LL195]
gi|441472424|emb|CCQ22179.1| 50S ribosomal protein L4 [Listeria monocytogenes]
gi|441475567|emb|CCQ25321.1| 50S ribosomal protein L4 [Listeria monocytogenes N53-1]
Length = 207
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 116/191 (60%), Gaps = 1/191 (0%)
Query: 110 DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGR 169
+ G + L VF + + ++ V+ Q A +QGTH K SEV G G+KPWRQKGTGR
Sbjct: 13 NAGEITLNDTVFGIEPNEKVVVDVILSQRASLRQGTHKVKNRSEVRGGGRKPWRQKGTGR 72
Query: 170 ARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVP 229
AR G++R PQ+RGG + GP PRS+A KL KKVRRL +K LS++ E KL+V E L
Sbjct: 73 ARQGSIRSPQWRGGGVVFGPTPRSYAYKLPKKVRRLAIKSILSSKVNEEKLVVLEGLTFD 132
Query: 230 SHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDT 289
+ KTK + + K L+ G E ++L+ +NL + V+P+ ++V + +HD
Sbjct: 133 APKTKEFAAFLKNISVDTKALIVVAGE-SENVELSARNLQGITVIPAESISVLEVAKHDK 191
Query: 290 LVMSRDAVNKI 300
L++++ AV K+
Sbjct: 192 LIITKAAVEKV 202
>gi|308070974|ref|YP_003872579.1| 50S ribosomal protein L4 [Paenibacillus polymyxa E681]
gi|310644201|ref|YP_003948960.1| 50S ribosomal protein L4 [Paenibacillus polymyxa SC2]
gi|374320646|ref|YP_005073775.1| 50S ribosomal protein L4 [Paenibacillus terrae HPL-003]
gi|305860253|gb|ADM72041.1| 50S ribosomal protein L4 [Paenibacillus polymyxa E681]
gi|309249152|gb|ADO58719.1| 50S ribosomal protein L4 [Paenibacillus polymyxa SC2]
gi|357199655|gb|AET57552.1| 50S ribosomal protein L4 [Paenibacillus terrae HPL-003]
gi|392304897|emb|CCI71260.1| 50S ribosomal protein L4 BL4 [Paenibacillus polymyxa M1]
Length = 207
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 81/203 (39%), Positives = 121/203 (59%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN G + L VF + K ++H V QLA +QGTH K SEV G
Sbjct: 1 MPKVALFNISGSQVGEIELNDAVFGIEPNKHVLHDAVVMQLASLRQGTHKVKGRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPW+QKGTGRAR G++R PQ+ GG T+ GP PRS+A KL KKVRRL +K ALS++ E
Sbjct: 61 GRKPWKQKGTGRARQGSIRAPQWVGGGTVFGPTPRSYAYKLPKKVRRLAIKSALSSKVIE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+++V + L + KTK N ++ +K L+ + + L+ +N+ V + +
Sbjct: 121 NEIIVLDALTLNGPKTKEFAAILNNLKADRKALIV-APSYDDNVALSARNIPGVKFVAAD 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
G+NV +L HD L+++++AV K+
Sbjct: 180 GINVLDVLGHDKLIITKEAVQKV 202
>gi|254418759|ref|ZP_05032483.1| ribosomal protein L4/L1 family [Brevundimonas sp. BAL3]
gi|196184936|gb|EDX79912.1| ribosomal protein L4/L1 family [Brevundimonas sp. BAL3]
Length = 212
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 84/205 (40%), Positives = 122/205 (59%), Gaps = 2/205 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
+ V + G + L+ VF + IR DI+ R V WQLAKR+ GTH +T +E S TGK
Sbjct: 3 LSVIQLDGKAAGDVELSDAVFGISDIRGDILARTVNWQLAKRRAGTHKVQTRNENSRTGK 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
K ++QKGTG ARHG+ R PQF GG+ GP R H L KK+R L L+ ALS++A G
Sbjct: 63 KMYKQKGTGGARHGSRRAPQFVGGSRAFGPVVRDHGFSLPKKIRALALRHALSSKAKSGD 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGL 279
L+V + + V KT + ++ TK +++ G + LA +N+ +++VLP+ GL
Sbjct: 123 LIVVDTVSVKEAKTASLRETLGKLGWTKALIIA-GPEVDTNFGLAARNIPHIDVLPNAGL 181
Query: 280 NVYSILQHDTLVMSRDAVNKIVDRM 304
NVY IL+ D LV+++ A+ I R
Sbjct: 182 NVYDILRADKLVLTKAAIEAIEARF 206
>gi|288818163|ref|YP_003432511.1| ribosomal protein L4 [Hydrogenobacter thermophilus TK-6]
gi|384128927|ref|YP_005511540.1| 50S ribosomal protein L4 [Hydrogenobacter thermophilus TK-6]
gi|288787563|dbj|BAI69310.1| ribosomal protein L4 [Hydrogenobacter thermophilus TK-6]
gi|308751764|gb|ADO45247.1| ribosomal protein L4/L1e [Hydrogenobacter thermophilus TK-6]
Length = 199
Score = 150 bits (378), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 89/203 (43%), Positives = 128/203 (63%), Gaps = 15/203 (7%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G M L DVF+V +++ I+ V++WQLA R+QGTHSTKT E+S +G+K QKGTG AR
Sbjct: 4 GDMELRDDVFNVEVKRHILWEVIKWQLACRRQGTHSTKTRGELSYSGRKLLPQKGTGNAR 63
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL---EV 228
HG F GG HGP+P + L KKVR+LGLK+ALS++A EGK+L+F+ + +V
Sbjct: 64 HGDRGANIFVGGGVAHGPRPTDYYYSLPKKVRKLGLKMALSSKAQEGKMLLFDSINIGDV 123
Query: 229 PSHKTKFIVNYYNQ--MENTKKVLLCDGGCIHEKLKLATQ---NLHYVNVLPSVGLNVYS 283
P KTK + + N +++ K ++ I EK ++ + NL V VLP+ GLNVY
Sbjct: 124 P--KTKKAIEFLNSNGIKDIKVTIV-----IPEKDEIVMKSFRNLPNVKVLPAEGLNVYD 176
Query: 284 ILQHDTLVMSRDAVNKIVDRMHT 306
IL D L + + A+ KI +R+ +
Sbjct: 177 ILWADVLAIQKQAIEKIYERLSS 199
>gi|430755581|ref|YP_007211142.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. subtilis str.
BSP1]
gi|430020101|gb|AGA20707.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 209
Score = 150 bits (378), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 123/205 (60%), Gaps = 4/205 (1%)
Query: 99 LVIPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVS 155
+++P +N++ G + L VF + + ++ + Q A +QGTH K SEV
Sbjct: 1 MIMPKVALYNQNGSTAGDIELNASVFGIEPNESVVFDAILMQRASLRQGTHKVKNRSEVR 60
Query: 156 GTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARA 215
G G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ KL KKVRRL +K LS++
Sbjct: 61 GGGRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAIKSVLSSKV 120
Query: 216 AEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+ ++V EDL + + KTK + + KK L+ +E + L+ +N+ V V+
Sbjct: 121 NDNNIIVLEDLTLDTAKTKEMAAILKGLSVEKKALIVTADA-NEAVALSARNIPGVTVVE 179
Query: 276 SVGLNVYSILQHDTLVMSRDAVNKI 300
+ G+NV ++ H+ L++++ AV K+
Sbjct: 180 ANGINVLDVVNHEKLLITKAAVEKV 204
>gi|255086631|ref|XP_002509282.1| predicted protein [Micromonas sp. RCC299]
gi|226524560|gb|ACO70540.1| predicted protein [Micromonas sp. RCC299]
Length = 190
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 86/193 (44%), Positives = 120/193 (62%), Gaps = 7/193 (3%)
Query: 114 MVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHG 173
+ L G FDVP+R DI HRVV WQ +KR+ T T SEVSGT +K QKG GRAR G
Sbjct: 3 VTLPGRHFDVPLRVDIAHRVVVWQRSKRRGNYAKTLTRSEVSGTTRKARAQKGAGRARVG 62
Query: 174 TLRGPQFRGGTTMHGPKP-RSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH- 231
TLR PQ RGG HGP R+ KL ++VRR GL++ALSA+AAEG+++V + L
Sbjct: 63 TLRAPQMRGGGVAHGPSGMRNWNTKLQRRVRRAGLQVALSAKAAEGRIVVLDSLHRGVEP 122
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KT+++ + + +K+ H K A+ NL +V V+ GLNVY +L+H +L
Sbjct: 123 KTQWLDGALDTLLGAQKL-----PTTHSNAKRASLNLPHVQVMDQFGLNVYDVLRHRSLA 177
Query: 292 MSRDAVNKIVDRM 304
++RDA++ +V R+
Sbjct: 178 ITRDALDALVARL 190
>gi|373859631|ref|ZP_09602357.1| ribosomal protein L4/L1e [Bacillus sp. 1NLA3E]
gi|372450626|gb|EHP24111.1| ribosomal protein L4/L1e [Bacillus sp. 1NLA3E]
Length = 207
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 81/203 (39%), Positives = 120/203 (59%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N+ G + L VF + ++ V Q A +QGTH TK SEV+G
Sbjct: 1 MPKVALYNQSGSQVGEIELNDSVFGIAPNNHVLFEAVIMQRASLRQGTHKTKVRSEVAGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPW+QKGTGRAR G++R PQ+RGG T+ GP PRS++ KL KKVRRL +K ALS++ E
Sbjct: 61 GRKPWKQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYSYKLPKKVRRLAIKSALSSKLIE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+LV E+L + KTK + K L+ + E + L+ +N+ V V+ +
Sbjct: 121 ENILVLENLGFEAPKTKEFTQVLKGLSVASKALIVTAD-LDENVALSARNIPGVTVVTAD 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
G++V +L HD L+M++ AV K+
Sbjct: 180 GISVLDVLNHDKLIMTKAAVEKV 202
>gi|317153957|ref|YP_004122005.1| 50S ribosomal protein L4 [Desulfovibrio aespoeensis Aspo-2]
gi|316944208|gb|ADU63259.1| ribosomal protein L4/L1e [Desulfovibrio aespoeensis Aspo-2]
Length = 206
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 79/205 (38%), Positives = 128/205 (62%), Gaps = 2/205 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + N+ G + LA +VF+V I+ +I++ VVR Q A ++ GTH+TKT SG G+K
Sbjct: 4 LQVVDQNNQKVGDIELAPEVFEVEIQPEILNLVVRAQRAAKRSGTHATKTRGMKSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G+ R P +RGG + GP+PR ++ K+NKK+R+L L++ALS+R AE K+
Sbjct: 64 PWRQKGTGRARAGSSRSPLWRGGAVLFGPQPRDYSFKVNKKIRKLALQMALSSRVAEDKV 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
V + +++ KTK ++ K +++ ++ L L+ +N+ + V+ + LN
Sbjct: 124 TVVKSIDLAEIKTKAFAAVVEKLGLGKTLIVLKDADLN--LALSARNVPGIKVIEADKLN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRMH 305
VY +L + LVM A + +R+
Sbjct: 182 VYDVLLYPELVMFEAAAQDVQERLK 206
>gi|226309809|ref|YP_002769703.1| 50S ribosomal protein L4 [Brevibacillus brevis NBRC 100599]
gi|254803719|sp|C0ZII1.1|RL4_BREBN RecName: Full=50S ribosomal protein L4
gi|226092757|dbj|BAH41199.1| 50S ribosomal protein L4 [Brevibacillus brevis NBRC 100599]
Length = 207
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 122/203 (60%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNE---DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N+ G + LA VF + +++ + Q A ++QGTH K SEV G
Sbjct: 1 MPKVALYNQTGSQVGEIDLADSVFGIEPNSAVLYDAIVMQQASQRQGTHDVKNRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ++GG + GP PR + KLN+KVRRL LK ALS +
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWKGGGVVFGPTPRKYGYKLNRKVRRLALKSALSTKVQN 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+LLV E L + KTK + + ++ +KVL+ + + LA++N+ ++ +
Sbjct: 121 NELLVLEALNFAAPKTKEMTAVLSSLKVDRKVLIVTSEY-DQNVALASRNIPGTKIVDAA 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
G+NV ++ HD ++++R+AV K+
Sbjct: 180 GINVLDLVAHDKVIVTREAVAKV 202
>gi|157690901|ref|YP_001485363.1| 50S ribosomal protein L4 [Bacillus pumilus SAFR-032]
gi|194017590|ref|ZP_03056201.1| ribosomal protein L4/L1 family [Bacillus pumilus ATCC 7061]
gi|166990946|sp|A8F986.1|RL4_BACP2 RecName: Full=50S ribosomal protein L4
gi|157679659|gb|ABV60803.1| ribosomal protein L4 [Bacillus pumilus SAFR-032]
gi|194010862|gb|EDW20433.1| ribosomal protein L4/L1 family [Bacillus pumilus ATCC 7061]
Length = 207
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 121/203 (59%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN++ G + L VF + + ++ + Q A +QGTH KT SEV G
Sbjct: 1 MPKVALFNQNGSTNGEIELNASVFGIEPNESVVFDAILMQRASLRQGTHKVKTRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ KL KKVRRL +K LS++ +
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSYKLPKKVRRLAIKSVLSSKVID 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++V EDL + + KTK + KK L+ +E + L+ +N+ V V+ +
Sbjct: 121 NNIIVLEDLTLDAVKTKEFAGILKGLSVEKKALIVTADA-NETVALSARNIPGVTVVEAN 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
G+NV ++ H+ L++++ AV K+
Sbjct: 180 GINVLDVVNHEKLLITKAAVEKV 202
>gi|424835392|ref|ZP_18260057.1| 50S ribosomal protein L4 [Clostridium sporogenes PA 3679]
gi|365978185|gb|EHN14280.1| 50S ribosomal protein L4 [Clostridium sporogenes PA 3679]
Length = 206
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 128/203 (63%), Gaps = 5/203 (2%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + FN E G + LA VF V + +H+VV+ LA ++QGT S KT +EVSG
Sbjct: 1 MPKVDLFNQNGEKVGDLQLADSVFGVEVNTYAMHQVVKALLANKRQGTQSAKTRAEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G KPWRQKGTGRAR G++R PQ+ G + PKPR + + + K ++++ +K AL+++ E
Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIHGGIVFAPKPRDYRMSIPKSMKKVAIKSALTSKVNE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++V +D+++ + KTK +V N + K +++ + E + + +N+ V ++P
Sbjct: 121 KLMVVVDDIKLETPKTKEVVKMLNAFDAKKTLIITNNA--EENVYKSARNIEGVQIIPVN 178
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
+NVY IL++D +V+++DAV+KI
Sbjct: 179 NINVYDILKYDKVVITKDAVSKI 201
>gi|299820956|ref|ZP_07052845.1| ribosomal protein L4/L1 family protein [Listeria grayi DSM 20601]
gi|299817977|gb|EFI85212.1| ribosomal protein L4/L1 family protein [Listeria grayi DSM 20601]
Length = 207
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 120/203 (59%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + +D G + L VF + + ++ V+ Q A +QGTH K SEV G
Sbjct: 1 MPKLSLLKQDGTSAGEITLNDAVFGIEPNEKVVVDVILSQRASLRQGTHKVKNRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS+A KL +KVRRL +K ALS++ E
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYAYKLPRKVRRLAIKSALSSKVKE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
LLV E+L + KTK + + K L+ G + ++L+ +NL + V+P+
Sbjct: 121 ENLLVLENLAFDAPKTKDFAAFLKNISVDTKALVVVAGE-SDNVELSARNLQGITVIPAE 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
++V + HD L++++ AV K+
Sbjct: 180 SISVLEVASHDKLIITKAAVEKV 202
>gi|222529729|ref|YP_002573611.1| 50S ribosomal protein L4 [Caldicellulosiruptor bescii DSM 6725]
gi|254803711|sp|B9MKI0.1|RL4_ANATD RecName: Full=50S ribosomal protein L4
gi|222456576|gb|ACM60838.1| ribosomal protein L4/L1e [Caldicellulosiruptor bescii DSM 6725]
Length = 208
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 123/202 (60%), Gaps = 4/202 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+PV N + G + L +F+VPI ++H+ V LA R+QGT + KT +EV G G+K
Sbjct: 4 VPVYNIEGQQIGEIELNDSIFNVPINTHVLHQAVVAHLANRRQGTFAAKTRAEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R P +R G + KPR +I L KKV+RL LK ALS++ E L
Sbjct: 64 PWRQKGTGRARQGSIRAPTWRKGGVVFAKKPRDFSIDLPKKVKRLALKCALSSKVKENNL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQ--MENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
+V + ++ +KTK ++ +EN K +++ +E L+ +T+N+ V L
Sbjct: 124 IVLDRWDMNQYKTKEVLRVLKNLGLENQKALIVIPEK--NEYLQKSTKNIPEVKTLQVGN 181
Query: 279 LNVYSILQHDTLVMSRDAVNKI 300
LNV+ IL++D V+ +DAV K+
Sbjct: 182 LNVFDILKYDKFVILQDAVKKV 203
>gi|154505168|ref|ZP_02041906.1| hypothetical protein RUMGNA_02681 [Ruminococcus gnavus ATCC 29149]
gi|336433163|ref|ZP_08612989.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 2_1_58FAA]
gi|153794647|gb|EDN77067.1| 50S ribosomal protein L4 [Ruminococcus gnavus ATCC 29149]
gi|336017125|gb|EGN46893.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 2_1_58FAA]
Length = 206
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 122/200 (61%), Gaps = 2/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G + L+ VF V + + ++H V QLA ++QGT KT SEVSG G+K
Sbjct: 4 VSVYNIEGKEVGTIDLSDAVFGVEVNEHLVHMAVVSQLANKRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ GG + P PR +++KLNKK +R LK ALS+R AE K
Sbjct: 64 PWRQKGTGHARQGSTRSPQWTGGGVVFAPTPRDYSMKLNKKEKRAALKSALSSRVAENKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V +++ KTK N N + K +++ + G ++ +L+ +N+ V + +N
Sbjct: 124 IVIDEMNFGEIKTKNFQNMLNSLNVNKALVVLEDGNVN--AELSARNIADVKTARTNTIN 181
Query: 281 VYSILQHDTLVMSRDAVNKI 300
V+ IL+++T++ ++ AV I
Sbjct: 182 VFDILKYNTVIATKAAVANI 201
>gi|299143193|ref|ZP_07036273.1| ribosomal protein L4/L1 family protein [Peptoniphilus sp. oral
taxon 386 str. F0131]
gi|298517678|gb|EFI41417.1| ribosomal protein L4/L1 family protein [Peptoniphilus sp. oral
taxon 386 str. F0131]
Length = 207
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 122/197 (61%), Gaps = 1/197 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I V N + L ++FD+ I + ++ VV+ LA R+QGT S KT +EV G G+K
Sbjct: 4 IQVVNMEGAAVSEIELNENIFDIDINEHAVYLVVKNILANRRQGTKSAKTRAEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G++R PQ+RGG + PKPR + KKVRRL L+ AL+++ E ++
Sbjct: 64 PWKQKGTGRARQGSIRSPQWRGGGIVFAPKPRDFSYTTPKKVRRLALRSALTSKVRENEM 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V +D+++ KTK V ++ K L+ G EK+K+A +N+ V + +N
Sbjct: 124 IVVDDIKMNDAKTKNFVQMLKAIKADPKALVVVAGY-DEKVKIAARNIPNVKTTMAENIN 182
Query: 281 VYSILQHDTLVMSRDAV 297
VY IL++++LV++ DA+
Sbjct: 183 VYDILKYNSLVITEDAL 199
>gi|229917357|ref|YP_002886003.1| 50S ribosomal protein L4 [Exiguobacterium sp. AT1b]
gi|259491559|sp|C4KZP5.1|RL4_EXISA RecName: Full=50S ribosomal protein L4
gi|229468786|gb|ACQ70558.1| ribosomal protein L4/L1e [Exiguobacterium sp. AT1b]
Length = 207
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 76/189 (40%), Positives = 118/189 (62%), Gaps = 1/189 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + LA +F + + +++ + Q A R+QGTH TK SEV G G+KPW+QKGTGRAR
Sbjct: 15 GEIELAEAIFGIEPNESVLYDAIVMQQASRRQGTHDTKGRSEVRGGGRKPWKQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+ GG T+ GP PRS++ KL KKVRRL L ALS++ +++V E L +
Sbjct: 75 QGSIRSPQWVGGGTVFGPTPRSYSYKLPKKVRRLALLSALSSKVQNNEIIVLEGLAFDAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KTK + N + +K L+ +E + LA +N+ V V+ + G+NV ++ +D ++
Sbjct: 135 KTKDMAAVLNSLSVERKALVVTADY-NETIALAARNIPGVTVIDAAGVNVLDLVANDKVI 193
Query: 292 MSRDAVNKI 300
++DAV K+
Sbjct: 194 FTKDAVAKV 202
>gi|319654869|ref|ZP_08008944.1| 50S ribosomal protein L4 [Bacillus sp. 2_A_57_CT2]
gi|317393432|gb|EFV74195.1| 50S ribosomal protein L4 [Bacillus sp. 2_A_57_CT2]
Length = 207
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 81/203 (39%), Positives = 119/203 (58%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN+ G + L +F + + ++ + Q A +QGTH TK SEV+G
Sbjct: 1 MPKVALFNQSGSKVGDIELNDAIFGIEPNQHVLFEAIVMQRASLRQGTHKTKIRSEVAGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG T+ GP PRS++ KL KKVRRL +K ALS++ E
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+LV E L + KTK + K L+ + E + L+ +N+ V V+ +
Sbjct: 121 ENILVLEGLAFETPKTKDFKGVLTGLSVDSKALIVTAD-LDENVALSARNIPGVTVVSAS 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
G+ V +L HD L+M++ AV K+
Sbjct: 180 GITVLDVLNHDKLIMTKAAVEKV 202
>gi|312127227|ref|YP_003992101.1| 50S ribosomal protein L4/L1e [Caldicellulosiruptor hydrothermalis
108]
gi|312793938|ref|YP_004026861.1| 50S ribosomal protein L4/L1e [Caldicellulosiruptor kristjanssonii
177R1B]
gi|344996424|ref|YP_004798767.1| 50S ribosomal protein L4 [Caldicellulosiruptor lactoaceticus 6A]
gi|311777246|gb|ADQ06732.1| ribosomal protein L4/L1e [Caldicellulosiruptor hydrothermalis 108]
gi|312181078|gb|ADQ41248.1| ribosomal protein L4/L1e [Caldicellulosiruptor kristjanssonii
177R1B]
gi|343964643|gb|AEM73790.1| ribosomal protein L4/L1e [Caldicellulosiruptor lactoaceticus 6A]
Length = 208
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 123/202 (60%), Gaps = 4/202 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+PV N + G + L +F+VPI ++H+ V LA R+QGT + KT +EV G G+K
Sbjct: 4 VPVYNIEGQQIGEIELNDSIFNVPINTHVLHQAVVAHLANRRQGTFAAKTRAEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R P +R G + KPR +I L KKV+RL LK ALS++ E L
Sbjct: 64 PWRQKGTGRARQGSIRAPTWRKGGVVFAKKPRDFSIDLPKKVKRLALKCALSSKVKENNL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQ--MENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
+V + ++ +KTK ++ +EN K +++ +E L+ +T+N+ V L
Sbjct: 124 IVLDRWDMNQYKTKEVLRVLKNLGLENQKALIVIPEK--NEYLQKSTRNIPEVKTLQVGN 181
Query: 279 LNVYSILQHDTLVMSRDAVNKI 300
LNV+ IL++D V+ +DAV K+
Sbjct: 182 LNVFDILKYDKFVILQDAVKKV 203
>gi|297703540|ref|XP_002828694.1| PREDICTED: 39S ribosomal protein L4, mitochondrial [Pongo abelii]
Length = 311
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 95/258 (36%), Positives = 137/258 (53%), Gaps = 8/258 (3%)
Query: 52 SGLSFLASRKFSTTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDK 111
GLS LA T + P +L K + P + Q V + F E
Sbjct: 19 QGLSSLAEEAARPTENPEQVANEGLPEPVLRKVELPVPAHRRPV-QAWVESLRGFEQERV 77
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G L DVF + R DI+H+V WQ ++ TKT +EV G G+KPW QKGTGRAR
Sbjct: 78 GLADLHPDVFAIAPRLDILHQVAMWQKNFKRISYAKTKTRAEVRGGGRKPWPQKGTGRAR 137
Query: 172 HGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPS 230
HG++R P +RGG HGP+ P S+ L KVR LGLK+AL+ + A+ L + + LE+P+
Sbjct: 138 HGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKMALTVKLAQDDLHIMDSLELPT 197
Query: 231 HKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKL----ATQNLHYVNVLPSVGLNVYSILQ 286
+++ + VLL D HE++ AT L N++P+VGLNV+S+L+
Sbjct: 198 GDPQYLTELAHYRRWGDSVLLVD--LTHEEMPQSIVEATSRLKTFNLIPAVGLNVHSMLK 255
Query: 287 HDTLVMSRDAVNKIVDRM 304
H TLV++ V + D++
Sbjct: 256 HQTLVLTLPTVAFLEDKL 273
>gi|328787688|ref|XP_001120958.2| PREDICTED: 39S ribosomal protein L4, mitochondrial [Apis mellifera]
Length = 280
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 86/205 (41%), Positives = 118/205 (57%), Gaps = 6/205 (2%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G M L DV+ R DIIH+ V+WQ R TK SEV G GKKPWRQKG GRAR
Sbjct: 66 GLMFLHPDVYGTAPRIDIIHQNVQWQKMYRFVSYAHTKVRSEVRGGGKKPWRQKGLGRAR 125
Query: 172 HGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPS 230
HG++R P +RGG +HGP+ P +H L R GL LS + A+ L + +DLE+PS
Sbjct: 126 HGSIRSPLWRGGGVIHGPRSPTTHFYMLPFYNRVNGLTSTLSVKLAQDDLYIIKDLEIPS 185
Query: 231 HKTKFIVNYYNQMENTKKVLLCDGGCIHE-KLKLATQNLHYVNVLPSVGLNVYSILQHDT 289
+++ +I + VL D I + AT + +VN++P GLNVYS+L+HDT
Sbjct: 186 NESSYIEKLIEERHWGPSVLFVDTDDIMPINITEATDTIKHVNLMPVYGLNVYSMLKHDT 245
Query: 290 LVMSRDAV----NKIVDRMHTPINR 310
LV++ A +KI+ +H P +R
Sbjct: 246 LVLTERAARLIEDKILYHLHRPDSR 270
>gi|225574701|ref|ZP_03783311.1| hypothetical protein RUMHYD_02778 [Blautia hydrogenotrophica DSM
10507]
gi|225038091|gb|EEG48337.1| 50S ribosomal protein L4 [Blautia hydrogenotrophica DSM 10507]
Length = 206
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 121/200 (60%), Gaps = 2/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N + G + L VF V I + ++H V QLA ++QGT KT SEV G G+K
Sbjct: 4 VSVLNMEGNEVGTIELNDAVFGVEINEHLVHLAVVRQLANKRQGTQKAKTRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G++R PQ+ GG + P PR +++K+N+K R LK AL+A+ + KL
Sbjct: 64 PWRQKGTGHARQGSIRAPQWTGGGVVFAPVPRDYSVKMNRKERLAALKSALTAKVQDNKL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V +DL+ + KTK + N N ++ K +++ + + + L+ +N+ V +N
Sbjct: 124 IVVDDLKFEAIKTKDMQNVLNNLKAEKALVVTP--AVDQNVVLSARNIPEVQTATVNTIN 181
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY +++H TLV+++DAV I
Sbjct: 182 VYDVMKHKTLVLTKDAVASI 201
>gi|83591275|ref|YP_431284.1| 50S ribosomal protein L4P [Moorella thermoacetica ATCC 39073]
gi|109893605|sp|Q2RFP8.1|RL4_MOOTA RecName: Full=50S ribosomal protein L4
gi|83574189|gb|ABC20741.1| LSU ribosomal protein L4P [Moorella thermoacetica ATCC 39073]
Length = 207
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 124/200 (62%), Gaps = 1/200 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N + G + L VF + + ++H V QLA R++GT +T+ ++VSG G+K
Sbjct: 4 VALYNIQGQQVGEVDLDDSVFGGEVNEAVLHDAVVMQLASRRRGTAATRGWADVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R P +RGG + GP+PR + +L KKVRRL L+ AL+++ +G +
Sbjct: 64 PWRQKGTGRARAGSIRSPLWRGGAVIFGPQPRDYGYRLPKKVRRLALRSALASKVRDGNI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V ++L++ +TK + + + K L+ ++L+ +NL V L S G+N
Sbjct: 124 IVLDELKMEKPRTKDMAHILKNLNAENKALVVT-ATREPNVELSARNLPGVRFLTSDGIN 182
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY +L HD LV+++DAV ++
Sbjct: 183 VYDLLAHDKLVITKDAVARV 202
>gi|195034530|ref|XP_001988917.1| GH11428 [Drosophila grimshawi]
gi|193904917|gb|EDW03784.1| GH11428 [Drosophila grimshawi]
Length = 923
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/195 (42%), Positives = 115/195 (58%), Gaps = 2/195 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G M L DVF R DII + WQ R TKT +EV G G+KPW QKG GRAR
Sbjct: 708 GMMELHPDVFAAQPRVDIIQENIEWQRKYRYVSMAHTKTRAEVRGGGRKPWPQKGMGRAR 767
Query: 172 HGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPS 230
HG++R P F+GG +HGP+ P SH L R LGL LS + A+ L + E++E+P+
Sbjct: 768 HGSIRSPLFKGGGIVHGPRSPTSHFYMLPFYTRVLGLTSTLSVKLAQDDLHIIENVELPT 827
Query: 231 HKTKFIVNYYNQMENTKKVLLCDGGCIH-EKLKLATQNLHYVNVLPSVGLNVYSILQHDT 289
+FI + + VL+ D + E + AT ++ YVN++PS GLNVYS+L+HDT
Sbjct: 828 RDAQFIRDLIAERNWGPSVLIIDKQEMFPENICYATDSIGYVNLMPSFGLNVYSMLKHDT 887
Query: 290 LVMSRDAVNKIVDRM 304
LV++ +AV + R+
Sbjct: 888 LVLTVEAVKHLEQRL 902
>gi|342733057|ref|YP_004771896.1| 50S ribosomal protein L4 [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|384456425|ref|YP_005669023.1| 50S ribosomal protein L4 [Candidatus Arthromitus sp. SFB-mouse-Yit]
gi|417959301|ref|ZP_12602136.1| 50S ribosomal protein L4 [Candidatus Arthromitus sp. SFB-1]
gi|417965178|ref|ZP_12606767.1| 50S ribosomal protein L4 [Candidatus Arthromitus sp. SFB-4]
gi|417966153|ref|ZP_12607560.1| 50S ribosomal protein L4 [Candidatus Arthromitus sp. SFB-5]
gi|417968156|ref|ZP_12609199.1| 50S ribosomal protein L4 [Candidatus Arthromitus sp. SFB-co]
gi|418015536|ref|ZP_12655101.1| ribosomal protein L4/L1 family protein [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|418373310|ref|ZP_12965401.1| 50S ribosomal protein L4 [Candidatus Arthromitus sp. SFB-mouse-SU]
gi|342330512|dbj|BAK57154.1| 50S ribosomal protein L4 [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|345505871|gb|EGX28165.1| ribosomal protein L4/L1 family protein [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|346984771|dbj|BAK80447.1| 50S ribosomal protein L4 [Candidatus Arthromitus sp. SFB-mouse-Yit]
gi|380333672|gb|EIA24208.1| 50S ribosomal protein L4 [Candidatus Arthromitus sp. SFB-1]
gi|380338716|gb|EIA27582.1| 50S ribosomal protein L4 [Candidatus Arthromitus sp. SFB-4]
gi|380340262|gb|EIA28883.1| 50S ribosomal protein L4 [Candidatus Arthromitus sp. SFB-co]
gi|380341699|gb|EIA30173.1| 50S ribosomal protein L4 [Candidatus Arthromitus sp. SFB-mouse-SU]
gi|380343365|gb|EIA31747.1| 50S ribosomal protein L4 [Candidatus Arthromitus sp. SFB-5]
Length = 208
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 122/200 (61%), Gaps = 1/200 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N E G + L ++FDV I+K +H+VV QLA ++QGT S KT SEVSG GKK
Sbjct: 4 VAVYNICGEKVGELELLKEIFDVEIKKYAVHQVVVTQLANKRQGTQSAKTRSEVSGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+ G + PKPR + + ++K +R++ + L+++ + L
Sbjct: 64 PWRQKGTGRARQGSIRAPQWIHGGVVFAPKPRDYRMNVSKTLRKVAITSVLTSKVKDENL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
LV + + KTK +V N N + +L ++ + ++ NL V V+P +N
Sbjct: 124 LVLDSISFNFPKTKEMVKVMNNF-NIESNMLLVTETSNKNVYRSSTNLQNVKVIPVNNIN 182
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY +L++D LVM++ AV K+
Sbjct: 183 VYDLLKYDKLVMTQGAVRKL 202
>gi|331004122|ref|ZP_08327602.1| 50S ribosomal protein L4 [Lachnospiraceae oral taxon 107 str.
F0167]
gi|402312693|ref|ZP_10831617.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium ICM7]
gi|404483000|ref|ZP_11018225.1| 50S ribosomal protein L4 [Clostridiales bacterium OBRC5-5]
gi|330411532|gb|EGG90942.1| 50S ribosomal protein L4 [Lachnospiraceae oral taxon 107 str.
F0167]
gi|400369151|gb|EJP22154.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium ICM7]
gi|404344090|gb|EJZ70449.1| 50S ribosomal protein L4 [Clostridiales bacterium OBRC5-5]
Length = 206
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 118/200 (59%), Gaps = 2/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I V N ++ G + L VF V + + ++H V QLA ++QGT KT SEVSG G+K
Sbjct: 4 ISVFNIEGKEVGSIELNDAVFGVNVNEHLVHMAVVAQLANKRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTG AR G+ R PQ++GG + P PR + I LNKK +R+ LK AL++R E K
Sbjct: 64 PWKQKGTGHARQGSTRSPQWKGGGVVFAPTPRDYTINLNKKEKRIALKSALTSRVLENKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V +D + KTK + N + K +++C + L+ +N++ V +N
Sbjct: 124 IVVDDFAMSEIKTKKMQQTLNNLNVKKALVVCAEN--EKNTVLSVRNIYGVKAASPKTIN 181
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY IL+++T+V S+DAV I
Sbjct: 182 VYDILKYNTVVASKDAVKTI 201
>gi|374300543|ref|YP_005052182.1| 50S ribosomal protein L4 [Desulfovibrio africanus str. Walvis Bay]
gi|332553479|gb|EGJ50523.1| ribosomal protein L4/L1e [Desulfovibrio africanus str. Walvis Bay]
Length = 206
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/205 (40%), Positives = 127/205 (61%), Gaps = 2/205 (0%)
Query: 100 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
V+ V + ++ G + LA +VF+VP+R +I++ VVR Q A + GTH TK + ++G GK
Sbjct: 3 VVKVVDQAKKEIGDIELAPEVFEVPVRPEILNLVVRAQRAAARSGTHMTKNRALITGGGK 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
KPWRQKGTGRAR G+ R P +R G T GP+PRS+A K+NKKVR L LK+ALS++ A
Sbjct: 63 KPWRQKGTGRARAGSSRSPLWRHGATTFGPQPRSYAFKVNKKVRALALKMALSSKLAGND 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGL 279
L+V + + KTK + K +++ + + L L+ +N+ + VL + L
Sbjct: 123 LMVLNGIIMDEIKTKKFAAVAKGLGLQKALIVLNE--VDNTLTLSARNVPDIKVLMADQL 180
Query: 280 NVYSILQHDTLVMSRDAVNKIVDRM 304
NVY +L++ LVM + AV + +R+
Sbjct: 181 NVYDVLKYPQLVMLQSAVESVQERL 205
>gi|289523368|ref|ZP_06440222.1| ribosomal protein L4/L1 family protein [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289503060|gb|EFD24224.1| ribosomal protein L4/L1 family protein [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 208
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/203 (41%), Positives = 121/203 (59%), Gaps = 7/203 (3%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + G + LA DVF I +H+VV LA ++QGTHSTKT EV G G+K
Sbjct: 4 VDVIGIDGQKVGEVALADDVFAARIHVPAMHQVVVAYLAAQRQGTHSTKTRGEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQK TGRARHG++R P + G +HGPKPRS+ K+NKKV++L +K ALS + E KL
Sbjct: 64 PWRQKHTGRARHGSIRSPLWIKGGVVHGPKPRSYDQKVNKKVKQLAIKSALSLKVKENKL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLK---LATQNLHYVNVLPSV 277
++ E +E S KTK + + + K L+ IHE L +A +N+ VL
Sbjct: 124 ILVEGIETMSPKTKDMCAFLANAQAQAKPLI----VIHESLPSIYMAARNIPGTRVLHVD 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
+NVY IL H+ L++++ A ++
Sbjct: 180 SINVYEILNHEHLILTKGAAQRL 202
>gi|407797891|ref|ZP_11144806.1| 50S ribosomal protein L4 [Salimicrobium sp. MJ3]
gi|407017654|gb|EKE30411.1| 50S ribosomal protein L4 [Salimicrobium sp. MJ3]
Length = 207
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 119/203 (58%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN+ G + L VF + ++H V Q A ++QGTH KT EVSG
Sbjct: 1 MPKVALFNQSGSKVGDLDLNDAVFGIEPNTHVLHETVLMQQASKRQGTHKVKTRGEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR GT+R PQ+ GG T+ GP PRS++ KL KKVRRL L+ A S++ E
Sbjct: 61 GRKPWRQKGTGRARQGTIRAPQWVGGGTVFGPTPRSYSYKLPKKVRRLALRSAYSSKVQE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
L E+L + + KTK +VN+ ++ + L+ E + L++ NL V +
Sbjct: 121 ENLYAVEELSMDAPKTKEVVNFLKALDANESALIITAQK-EENVVLSSNNLPKVETVTFD 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
++V +L HD +++++DA K+
Sbjct: 180 QVSVLDLLTHDKVIVTKDAAEKV 202
>gi|345021330|ref|ZP_08784943.1| 50S ribosomal protein L4 [Ornithinibacillus scapharcae TW25]
Length = 207
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 115/202 (56%), Gaps = 4/202 (1%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P F +D G L VF + ++H V Q A +QGTH+ K SEV G
Sbjct: 1 MPKVALFKQDGSQAGEFELNESVFGIEPNTHVLHEAVVMQRASMRQGTHAVKNRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+ GG + GP PRS++ KL KKVRRL LK ALS++ E
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWVGGGVVFGPTPRSYSYKLPKKVRRLALKSALSSKVNE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
L+V E++ + + KTK +V + + +K L+ E + + N+ V VL
Sbjct: 121 QNLIVLENIAIDAPKTKEVVKMLSALNVERKALIVTADT-DENVIRSANNIQGVKVLSVT 179
Query: 278 GLNVYSILQHDTLVMSRDAVNK 299
+NV +L HD L+ ++DA K
Sbjct: 180 EVNVLDLLSHDKLIFTKDAAEK 201
>gi|22547136|ref|NP_057040.2| 39S ribosomal protein L4, mitochondrial isoform a [Homo sapiens]
gi|22547138|ref|NP_666499.1| 39S ribosomal protein L4, mitochondrial isoform a [Homo sapiens]
gi|74733471|sp|Q9BYD3.1|RM04_HUMAN RecName: Full=39S ribosomal protein L4, mitochondrial; Short=L4mt;
Short=MRP-L4
gi|13559361|dbj|BAB40840.1| mitochondrial ribosomal protein L4 (L4mt) [Homo sapiens]
gi|14602670|gb|AAH09858.1| Mitochondrial ribosomal protein L4 [Homo sapiens]
gi|119604489|gb|EAW84083.1| mitochondrial ribosomal protein L4, isoform CRA_a [Homo sapiens]
gi|119604490|gb|EAW84084.1| mitochondrial ribosomal protein L4, isoform CRA_a [Homo sapiens]
Length = 311
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 95/257 (36%), Positives = 136/257 (52%), Gaps = 8/257 (3%)
Query: 53 GLSFLASRKFSTTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKG 112
GLS LA T + P +L K + P + Q V + F E G
Sbjct: 20 GLSSLAEEAARATENPEQVASEGLPEPVLRKVELPVPTHRRPV-QAWVESLRGFEQERVG 78
Query: 113 FMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARH 172
L DVF R DI+H+V WQ ++ TKT +EV G G+KPW QKGTGRARH
Sbjct: 79 LADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEVRGGGRKPWPQKGTGRARH 138
Query: 173 GTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R P +RGG HGP+ P S+ L KVR LGLK+AL+ + A+ L + + LE+P+
Sbjct: 139 GSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLAQDDLHIMDSLELPTG 198
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKL----ATQNLHYVNVLPSVGLNVYSILQH 287
+++ + VLL D HE++ AT L N++P+VGLNV+S+L+H
Sbjct: 199 DPQYLTELAHYRRWGDSVLLVD--LTHEEMPQSIVEATSRLKTFNLIPAVGLNVHSMLKH 256
Query: 288 DTLVMSRDAVNKIVDRM 304
TLV++ V + D++
Sbjct: 257 QTLVLTLPTVAFLEDKL 273
>gi|383753516|ref|YP_005432419.1| putative 50S ribosomal protein L4 [Selenomonas ruminantium subsp.
lactilytica TAM6421]
gi|381365568|dbj|BAL82396.1| putative 50S ribosomal protein L4 [Selenomonas ruminantium subsp.
lactilytica TAM6421]
Length = 207
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 121/200 (60%), Gaps = 1/200 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + N+ G + L ++F V + ++H+ V QLA ++ GTH+TKT S V G G+K
Sbjct: 4 VAVYDITNKQVGDIELNDNIFGVEMNAGLLHQAVVMQLAAQRLGTHATKTRSFVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G+ R P + GG T+ GP PR +A + +K RRL +K ALS + G+L
Sbjct: 64 PWKQKGTGRARAGSTRSPLWVGGGTVFGPHPRKYAFSMPRKQRRLAIKCALSDKVKNGEL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + LE + KTK +V + KK LL E ++ + +N+ V + +GLN
Sbjct: 124 VVLDSLEFEAAKTKQVVKMMSDFSVEKKALLITADEA-ENVEKSARNIPGVKAISMMGLN 182
Query: 281 VYSILQHDTLVMSRDAVNKI 300
V+ IL HD L +++DAV +I
Sbjct: 183 VHDILNHDKLFITKDAVTRI 202
>gi|335040796|ref|ZP_08533918.1| ribosomal protein L4/L1e [Caldalkalibacillus thermarum TA2.A1]
gi|334179371|gb|EGL82014.1| ribosomal protein L4/L1e [Caldalkalibacillus thermarum TA2.A1]
Length = 207
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 123/203 (60%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N++ G + LA VF + + ++H V Q A + GTH+TK + V G
Sbjct: 1 MPKVTLYNQNGSIVGEIELADSVFGIEPNQYVLHDAVVMQRASMRAGTHATKNRAAVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRARHG++R PQ+ GG + GP PR + KL KKVRRL +K ALS++
Sbjct: 61 GRKPWRQKGTGRARHGSIRAPQWVGGGVVFGPTPRKYGYKLPKKVRRLAIKSALSSKVKN 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++ V + L + KTK +VN ++ +K L+ + + L+++N+ V + +
Sbjct: 121 DEIKVLDQLTLEKPKTKEMVNILKNLDVNRKALIVTDNY-DDNVALSSRNIPGVTFVTAE 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
G+NV +L HDTL++++DAV K+
Sbjct: 180 GINVLDVLAHDTLIITKDAVAKV 202
>gi|339504869|ref|YP_004692289.1| 50S ribosomal protein L4 [Roseobacter litoralis Och 149]
gi|338758862|gb|AEI95326.1| 50S ribosomal protein L4 [Roseobacter litoralis Och 149]
Length = 205
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/185 (42%), Positives = 111/185 (60%), Gaps = 2/185 (1%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
+F + R DI+HRVVRWQ Q GTH KT SEV+ + KK +RQKGTG ARHG P
Sbjct: 22 LFGLEPRADILHRVVRWQRNNAQAGTHKVKTRSEVNYSTKKIYRQKGTGGARHGARSAPI 81
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
FRGG GPK RSH +L KK R+LGL ALSA+ G+L++ +D+ +
Sbjct: 82 FRGGGVYKGPKVRSHGHELTKKFRKLGLCHALSAKMKAGELVIIDDVSSDGKTSALAKQV 141
Query: 240 YNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNK 299
N K+ L+ DG ++E A +N+ +++LP++G NVY IL+ DTLV+++ V
Sbjct: 142 ANL--GWKRALIIDGATVNETFAQAARNIDGLDILPTMGANVYDILKRDTLVITKAGVEA 199
Query: 300 IVDRM 304
+ R+
Sbjct: 200 LEARL 204
>gi|332852922|ref|XP_001164062.2| PREDICTED: 39S ribosomal protein L4, mitochondrial isoform 5 [Pan
troglodytes]
gi|410206720|gb|JAA00579.1| mitochondrial ribosomal protein L4 [Pan troglodytes]
gi|410253658|gb|JAA14796.1| mitochondrial ribosomal protein L4 [Pan troglodytes]
gi|410305182|gb|JAA31191.1| mitochondrial ribosomal protein L4 [Pan troglodytes]
gi|410332115|gb|JAA35004.1| mitochondrial ribosomal protein L4 [Pan troglodytes]
Length = 311
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 95/258 (36%), Positives = 136/258 (52%), Gaps = 8/258 (3%)
Query: 52 SGLSFLASRKFSTTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDK 111
GLS LA T + P +L K + P + Q V + F E
Sbjct: 19 QGLSSLAEEAARATENPEQVASEGLPEPVLRKVELPVPTHRRPV-QAWVESLRGFEQERV 77
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G L DVF R DI+H+V WQ ++ TKT +EV G G+KPW QKGTGRAR
Sbjct: 78 GLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEVRGGGRKPWPQKGTGRAR 137
Query: 172 HGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPS 230
HG++R P +RGG HGP+ P S+ L KVR LGLK+AL+ + A+ L + + LE+P+
Sbjct: 138 HGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLAQDDLHIMDSLELPT 197
Query: 231 HKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKL----ATQNLHYVNVLPSVGLNVYSILQ 286
+++ + VLL D HE++ AT L N++P+VGLNV+S+L+
Sbjct: 198 GDPQYLTELAHYRRWGDSVLLVD--LTHEEMPQSIVEATSRLKTFNLIPAVGLNVHSMLK 255
Query: 287 HDTLVMSRDAVNKIVDRM 304
H TLV++ V + D++
Sbjct: 256 HQTLVLTLPTVAFLEDKL 273
>gi|195437861|ref|XP_002066858.1| GK24328 [Drosophila willistoni]
gi|194162943|gb|EDW77844.1| GK24328 [Drosophila willistoni]
Length = 296
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/234 (37%), Positives = 130/234 (55%), Gaps = 3/234 (1%)
Query: 80 LLLKKTVLTPDITIGLHQDLVIPVTNFFNEDK-GFMVLAGDVFDVPIRKDIIHRVVRWQL 138
+L++ P + ++ I T+ E K G + L DVF R DII V WQ
Sbjct: 48 ILVQNYTEYPPVNRNANRQAWIENTDTVAERKVGLIELHPDVFAAQPRVDIIQENVEWQR 107
Query: 139 AKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPK-PRSHAIK 197
R KT +EV G G+KPW QKG GRARHG++R P F+GG +HGP+ P +H
Sbjct: 108 KYRYVSMAHAKTRAEVRGGGRKPWPQKGQGRARHGSIRSPLFKGGGVIHGPRSPTTHFYM 167
Query: 198 LNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCI 257
L R LGL LS + A+ L + E ++P+ + +FI + ++ + VL+ D I
Sbjct: 168 LPFYKRVLGLTSTLSVKLAQDDLHIIESTDIPTTEPQFIKDLIDERQWGPSVLIVDKADI 227
Query: 258 H-EKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNKIVDRMHTPINR 310
E + AT L +VN++P+ GLNVYS+L+HDTLV++ DAV + R+ ++R
Sbjct: 228 FPENICYATDELGFVNLMPTFGLNVYSMLKHDTLVLTVDAVKHLEQRLLYQLHR 281
>gi|294496986|ref|YP_003560686.1| 50S ribosomal protein L4 [Bacillus megaterium QM B1551]
gi|294346923|gb|ADE67252.1| 50S ribosomal protein L4 [Bacillus megaterium QM B1551]
Length = 207
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 121/203 (59%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN E+ G + L VF + ++ + Q A ++QGT K SEV G
Sbjct: 1 MPKVALFNQNGENVGEIELQDAVFGIEPNNKVLFDAIVMQRASQRQGTSKVKNRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ KL KKVRRL +K ALS + +
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPVPRSYSYKLPKKVRRLAIKSALSTKVQD 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++V E L + KTK +V + +K L+ ++E + L+ +N+ V V+ +
Sbjct: 121 NSIVVLEALSFDAPKTKEMVAVLKNLTVERKALVVTAD-LNENVALSARNIPGVTVVAAN 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
GL+V ++ HD LV+++DAV K+
Sbjct: 180 GLSVLDVMNHDKLVITKDAVEKV 202
>gi|148381420|ref|YP_001255961.1| 50S ribosomal protein L4 [Clostridium botulinum A str. ATCC 3502]
gi|153933556|ref|YP_001385795.1| 50S ribosomal protein L4 [Clostridium botulinum A str. ATCC 19397]
gi|153934780|ref|YP_001389202.1| 50S ribosomal protein L4 [Clostridium botulinum A str. Hall]
gi|153940969|ref|YP_001392833.1| 50S ribosomal protein L4 [Clostridium botulinum F str. Langeland]
gi|168178833|ref|ZP_02613497.1| ribosomal protein L4 [Clostridium botulinum NCTC 2916]
gi|226950932|ref|YP_002806023.1| 50S ribosomal protein L4 [Clostridium botulinum A2 str. Kyoto]
gi|384463796|ref|YP_005676391.1| 50S ribosomal protein L4 [Clostridium botulinum F str. 230613]
gi|387819761|ref|YP_005680108.1| 50S ribosomal protein L4 [Clostridium botulinum H04402 065]
gi|421834862|ref|ZP_16269789.1| 50S ribosomal protein L4 [Clostridium botulinum CFSAN001627]
gi|166234655|sp|A7FZ68.1|RL4_CLOB1 RecName: Full=50S ribosomal protein L4
gi|166234656|sp|A5I7K5.1|RL4_CLOBH RecName: Full=50S ribosomal protein L4
gi|166234657|sp|A7GJ73.1|RL4_CLOBL RecName: Full=50S ribosomal protein L4
gi|254803725|sp|C1FMV0.1|RL4_CLOBJ RecName: Full=50S ribosomal protein L4
gi|148290904|emb|CAL85040.1| 50S ribosomal protein L4 [Clostridium botulinum A str. ATCC 3502]
gi|152929600|gb|ABS35100.1| 50S ribosomal protein L4 [Clostridium botulinum A str. ATCC 19397]
gi|152930694|gb|ABS36193.1| 50S ribosomal protein L4 [Clostridium botulinum A str. Hall]
gi|152936865|gb|ABS42363.1| 50S ribosomal protein L4 [Clostridium botulinum F str. Langeland]
gi|182670131|gb|EDT82107.1| ribosomal protein L4 [Clostridium botulinum NCTC 2916]
gi|226844588|gb|ACO87254.1| ribosomal protein L4 [Clostridium botulinum A2 str. Kyoto]
gi|295320813|gb|ADG01191.1| 50S ribosomal protein L4 [Clostridium botulinum F str. 230613]
gi|322807805|emb|CBZ05380.1| LSU ribosomal protein L4p (L1e) [Clostridium botulinum H04402 065]
gi|409743654|gb|EKN42547.1| 50S ribosomal protein L4 [Clostridium botulinum CFSAN001627]
Length = 206
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 127/203 (62%), Gaps = 5/203 (2%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + FN E G + LA VF V + +H+VV+ LA ++QGT S KT +EVSG
Sbjct: 1 MPKVDLFNQNGEKVGDLQLADSVFGVEVNTYAMHQVVKALLANKRQGTQSAKTRAEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G KPWRQKGTGRAR G++R PQ+ G + PKPR + + + K ++++ +K AL+++ E
Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIHGGVVFAPKPRDYRMSIPKSMKKVAIKSALTSKVNE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++V +++++ + KTK +V N N KK L+ E + + +N+ V ++P
Sbjct: 121 NLMVVVDEIKLETPKTKEVVKMLNSF-NAKKTLIITNNA-EENVYKSARNIEGVQIIPVN 178
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
+NVY +L++D +V+++DAV+KI
Sbjct: 179 NINVYDVLKYDKVVITKDAVSKI 201
>gi|23097575|ref|NP_691041.1| 50S ribosomal protein L4 [Oceanobacillus iheyensis HTE831]
gi|46577267|sp|Q8ETY1.1|RL4_OCEIH RecName: Full=50S ribosomal protein L4
gi|22775798|dbj|BAC12076.1| 50S ribosomal protein L4 [Oceanobacillus iheyensis HTE831]
Length = 207
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/188 (43%), Positives = 112/188 (59%), Gaps = 1/188 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L VF + ++H V Q A +QGTH+ K SEV G G+KPWRQKGTGRAR
Sbjct: 15 GDIELNDSVFGIEPNTHVLHEAVVMQRASLRQGTHAVKNRSEVRGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G+ R PQ+ GG T+ GP PRS++ KL KKVRRL L+ ALS++ E LLV E++ + +
Sbjct: 75 QGSTRSPQWVGGGTVFGPTPRSYSYKLPKKVRRLALRSALSSKVNEESLLVLENISIDAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KTK IVN ++ K L+ E + + NL V VL LN+ +L HD L+
Sbjct: 135 KTKEIVNILKGLQVDAKALIVLSEK-DETVIRSANNLQNVTVLTVEELNILDLLMHDKLI 193
Query: 292 MSRDAVNK 299
+++DA K
Sbjct: 194 ITKDAAEK 201
>gi|315652353|ref|ZP_07905345.1| 50S ribosomal protein L4 [Lachnoanaerobaculum saburreum DSM 3986]
gi|315485476|gb|EFU75866.1| 50S ribosomal protein L4 [Lachnoanaerobaculum saburreum DSM 3986]
Length = 206
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 118/200 (59%), Gaps = 2/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I V N ++ G + L VF V + + ++H V QLA ++QGT KT SEVSG G+K
Sbjct: 4 ISVFNIEGKEVGSIELNDAVFGVNVNEHLVHMAVVAQLANKRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTG AR G+ R PQ++GG + P PR + I LNKK +R+ LK AL++R E K
Sbjct: 64 PWKQKGTGHARQGSTRSPQWKGGGVVFAPTPRDYTINLNKKEKRIALKSALTSRVLENKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V +D + KTK + N + K +++C + L+ +N++ V +N
Sbjct: 124 IVVDDFSMGEIKTKKMQQTLNNLNVKKALVVCAEN--EKNTVLSVRNIYGVKAASPKTIN 181
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY IL+++T+V S+DAV I
Sbjct: 182 VYDILKYNTVVASKDAVKTI 201
>gi|403669805|ref|ZP_10934981.1| 50S ribosomal protein L4 [Kurthia sp. JC8E]
Length = 207
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 81/189 (42%), Positives = 116/189 (61%), Gaps = 1/189 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +F + + ++ + Q A +QGTH TK SEVSG G+KPWRQKGTGRAR
Sbjct: 15 GEIELNDAIFGIEPNEAVLFDAIVAQRASLRQGTHKTKGRSEVSGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+RGG + GP PRS+A KL KKVRRL LK ALS + AE LV + L + +
Sbjct: 75 QGSIRSPQWRGGGIVFGPTPRSYAYKLPKKVRRLALKSALSTKVAETNFLVVDALTLDAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KTK V + K L+ ++E + L+ +N+ V VL + G+NV ++ + +V
Sbjct: 135 KTKEFVKVLADLSVETKSLIVTAD-VNENVALSARNIPGVTVLTAEGINVLDLVSANKVV 193
Query: 292 MSRDAVNKI 300
+++DAV KI
Sbjct: 194 ITKDAVAKI 202
>gi|187776577|ref|ZP_02993050.1| hypothetical protein CLOSPO_00091 [Clostridium sporogenes ATCC
15579]
gi|187775236|gb|EDU39038.1| 50S ribosomal protein L4 [Clostridium sporogenes ATCC 15579]
Length = 206
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 128/203 (63%), Gaps = 5/203 (2%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + FN E G + LA VF V + +H+VV+ LA ++QGT S KT +EVSG
Sbjct: 1 MPKVDLFNQNGEKVGDLQLADSVFGVEVNTYAMHQVVKALLANKRQGTQSAKTRAEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G KPWRQKGTGRAR G++R PQ+ G + PKPR + + + K ++++ +K AL+++ E
Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIHGGIVFAPKPRDYRMSIPKSMKKVAIKSALTSKVNE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++V +D+++ + KTK +V N + K +++ + E + + +N+ V ++P
Sbjct: 121 KLMVVVDDIKLETPKTKEVVKMLNAFDAKKTLIITNNS--EENVYKSARNIEGVQIIPVN 178
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
+NVY +L++D +V+++DAV+KI
Sbjct: 179 NINVYDVLKYDKVVITKDAVSKI 201
>gi|375086501|ref|ZP_09732908.1| 50S ribosomal protein L4 [Megamonas funiformis YIT 11815]
gi|291533620|emb|CBL06733.1| LSU ribosomal protein L4P [Megamonas hypermegale ART12/1]
gi|374564846|gb|EHR36126.1| 50S ribosomal protein L4 [Megamonas funiformis YIT 11815]
Length = 207
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 120/200 (60%), Gaps = 1/200 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + G + L VF V + + ++H+ V QLA ++ GTH+TKT V G G+K
Sbjct: 4 VAVYTVAGQQIGDIELNESVFGVEVNEGLVHQAVVMQLAAQRLGTHATKTRGLVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G+ R P + GG T+ GP PRS+A ++ +K RRL +K AL+ + G
Sbjct: 64 PWKQKGTGRARSGSTRSPLWVGGGTVFGPSPRSYAFRMPRKQRRLAIKCALTDKVNNGDF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V E L+ + KTK +V + +K L+ + E ++ +++N+ V + S GLN
Sbjct: 124 IVLESLDFAAPKTKEVVKMMSDFNVAEKALIVTADVV-ENVEKSSRNIPGVKAISSCGLN 182
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY IL H+ L +++DA+ +I
Sbjct: 183 VYDILNHNKLFITKDAITRI 202
>gi|320352918|ref|YP_004194257.1| 50S ribosomal protein L4P [Desulfobulbus propionicus DSM 2032]
gi|320121420|gb|ADW16966.1| LSU ribosomal protein L4P [Desulfobulbus propionicus DSM 2032]
Length = 207
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/204 (41%), Positives = 121/204 (59%), Gaps = 6/204 (2%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+ N E G + L +F++ + I+H VV Q A R+ G TKT EVSG G KPW
Sbjct: 6 IYNTRAEKVGEIDLNESLFNLEVNTGILHEVVCMQRANRRSGNACTKTRGEVSGGGAKPW 65
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQKGTGRAR G+ P +RGG T+ GPKPR ++ + KKV+RL LK+A+SAR EG +++
Sbjct: 66 RQKGTGRARSGSRTSPVWRGGGTVFGPKPRDYSYSMPKKVKRLALKMAMSARCQEGNIVI 125
Query: 223 FEDLEVPSHKTK-FIVNYYN-QMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+ ++P+ KTK F+ N Q EN V + L L+ +N VLP GLN
Sbjct: 126 VDQFDLPAVKTKEFLKVMTNFQFENCLVVTAES----EDNLGLSARNAVGFKVLPVAGLN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL+H L++ + ++ KI +R+
Sbjct: 182 VYDILKHSKLMILQSSLAKIEERL 205
>gi|167036802|ref|YP_001664380.1| 50S ribosomal protein L4 [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|167039521|ref|YP_001662506.1| 50S ribosomal protein L4 [Thermoanaerobacter sp. X514]
gi|256752633|ref|ZP_05493485.1| ribosomal protein L4/L1e [Thermoanaerobacter ethanolicus CCSD1]
gi|300915228|ref|ZP_07132543.1| ribosomal protein L4/L1e [Thermoanaerobacter sp. X561]
gi|307725152|ref|YP_003904903.1| 50S ribosomal protein L4/L1e [Thermoanaerobacter sp. X513]
gi|320115224|ref|YP_004185383.1| 50S ribosomal protein L4/L1e [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|326390660|ref|ZP_08212215.1| ribosomal protein L4/L1e [Thermoanaerobacter ethanolicus JW 200]
gi|345018533|ref|YP_004820886.1| 50S ribosomal protein L4 [Thermoanaerobacter wiegelii Rt8.B1]
gi|392939575|ref|ZP_10305219.1| 50S ribosomal protein L4, bacterial/organelle [Thermoanaerobacter
siderophilus SR4]
gi|226731436|sp|B0KCK1.1|RL4_THEP3 RecName: Full=50S ribosomal protein L4
gi|226731437|sp|B0K5P4.1|RL4_THEPX RecName: Full=50S ribosomal protein L4
gi|166853761|gb|ABY92170.1| ribosomal protein L4/L1e [Thermoanaerobacter sp. X514]
gi|166855636|gb|ABY94044.1| ribosomal protein L4/L1e [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|256748453|gb|EEU61505.1| ribosomal protein L4/L1e [Thermoanaerobacter ethanolicus CCSD1]
gi|300888952|gb|EFK84099.1| ribosomal protein L4/L1e [Thermoanaerobacter sp. X561]
gi|307582213|gb|ADN55612.1| ribosomal protein L4/L1e [Thermoanaerobacter sp. X513]
gi|319928315|gb|ADV79000.1| ribosomal protein L4/L1e [Thermoanaerobacter brockii subsp. finnii
Ako-1]
gi|325993338|gb|EGD51775.1| ribosomal protein L4/L1e [Thermoanaerobacter ethanolicus JW 200]
gi|344033876|gb|AEM79602.1| ribosomal protein L4/L1e [Thermoanaerobacter wiegelii Rt8.B1]
gi|392291325|gb|EIV99768.1| 50S ribosomal protein L4, bacterial/organelle [Thermoanaerobacter
siderophilus SR4]
Length = 206
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/206 (38%), Positives = 125/206 (60%), Gaps = 3/206 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N E G + L VF VP+ ++H V LA ++QGTHSTKT EV G G+K
Sbjct: 4 VAVYNVKGEQVGEIELKDSVFGVPVNVPVMHEAVLNYLANQRQGTHSTKTRGEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+ G + GPKPR ++ KL KKV+RL LK ALS++ + ++
Sbjct: 64 PWRQKGTGRARQGSIRAPQWIKGGIVFGPKPRDYSYKLPKKVKRLALKSALSSKVRDNEI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V ++ ++ KTK +V +++ G + ++L+ +N+ V L + LN
Sbjct: 124 IVLDEFKLDQPKTKKVVELLKNFNVDSALIVVPEG--EKNVELSARNIPGVKTLYANYLN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRMHT 306
Y IL++D ++++DAV IV+ ++
Sbjct: 182 TYDILKYDKFIITKDAVG-IVEEVYA 206
>gi|380011885|ref|XP_003690024.1| PREDICTED: 39S ribosomal protein L4, mitochondrial-like [Apis
florea]
Length = 280
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/205 (41%), Positives = 118/205 (57%), Gaps = 6/205 (2%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G M+L DV+ R DIIH+ V+WQ R TK SEV G GKKPWRQKG GRAR
Sbjct: 66 GLMILHPDVYGAAPRIDIIHQNVQWQKMYRFVSYAHTKVRSEVRGGGKKPWRQKGLGRAR 125
Query: 172 HGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPS 230
HG++R P +RGG +HGP+ P +H L R GL LS + A+ L + +DLE+PS
Sbjct: 126 HGSIRSPLWRGGGIIHGPRSPTTHFYMLPFYSRVNGLTSTLSIKLAQDDLYIIKDLEIPS 185
Query: 231 HKTKFIVNYYNQMENTKKVLLCDGGCIHE-KLKLATQNLHYVNVLPSVGLNVYSILQHDT 289
++ +I + VL D I + AT + ++N++P GLNVYS+L+HDT
Sbjct: 186 NEPSYIEKLIEERHWGPSVLFVDTDDIMPINITEATDTIKHINLMPVYGLNVYSMLKHDT 245
Query: 290 LVMSRDAV----NKIVDRMHTPINR 310
LV++ A +KI+ +H P +R
Sbjct: 246 LVLTERAARLIEDKILYHLHRPDSR 270
>gi|170754589|ref|YP_001783120.1| 50S ribosomal protein L4 [Clostridium botulinum B1 str. Okra]
gi|226730644|sp|B1IGF3.1|RL4_CLOBK RecName: Full=50S ribosomal protein L4
gi|169119801|gb|ACA43637.1| 50S ribosomal protein L4 [Clostridium botulinum B1 str. Okra]
Length = 206
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 128/203 (63%), Gaps = 5/203 (2%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + FN E G + LA VF V + +H+VV+ LA ++QGT S KT +EVSG
Sbjct: 1 MPKIDLFNQNGEKVGDLQLADSVFGVEVNTYAMHQVVKALLANKRQGTQSAKTRAEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G KPWRQKGTGRAR G++R PQ+ G + PKPR + + + K ++++ +K AL+++ E
Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIHGGIVFAPKPRDYRMSIPKSMKKVAMKSALTSKVNE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++V +D+++ + KTK +V N + K +++ + E + + +N+ V ++P
Sbjct: 121 KLMVVVDDIKLETPKTKEVVKMLNSFDAKKTLIITNNA--EENVYKSARNIEGVQIIPVN 178
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
+NVY +L++D +V+++DAV+KI
Sbjct: 179 NINVYDLLKYDKVVITKDAVSKI 201
>gi|339442853|ref|YP_004708858.1| 50S ribosomal protein L4 [Clostridium sp. SY8519]
gi|338902254|dbj|BAK47756.1| ribosomal protein L4 [Clostridium sp. SY8519]
Length = 206
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 120/200 (60%), Gaps = 2/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N E+ G + L VF V + ++H V QLA ++QGT KT SEV G G+K
Sbjct: 4 VSVYNMAGEEVGTLDLNDAVFGVEPNEHLVHAAVTAQLANKRQGTQKAKTRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ GG + P PRS+ +K+NKK +R LK LS++ A+ K
Sbjct: 64 PWRQKGTGHARQGSTRSPQWTGGGVVFAPVPRSYDLKVNKKEKRAALKSVLSSKVADSKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V +DL++ + KTK VN N ++ + +++ +G + E + + N+ V +N
Sbjct: 124 IVLDDLKLDAIKTKDFVNVLNNLKVSDALVILNG--MDENVIRSAANVADVQTTQINNMN 181
Query: 281 VYSILQHDTLVMSRDAVNKI 300
V+ +L+HDT+V ++ AV I
Sbjct: 182 VFDVLKHDTVVTTKAAVASI 201
>gi|187934984|ref|YP_001884474.1| 50S ribosomal protein L4 [Clostridium botulinum B str. Eklund 17B]
gi|188589298|ref|YP_001919673.1| 50S ribosomal protein L4 [Clostridium botulinum E3 str. Alaska E43]
gi|251779469|ref|ZP_04822389.1| 50S ribosomal protein L4 [Clostridium botulinum E1 str. 'BoNT E
Beluga']
gi|226730642|sp|B2UYB1.1|RL4_CLOBA RecName: Full=50S ribosomal protein L4
gi|226730643|sp|B2TIH6.1|RL4_CLOBB RecName: Full=50S ribosomal protein L4
gi|187723137|gb|ACD24358.1| 50S ribosomal protein L4 [Clostridium botulinum B str. Eklund 17B]
gi|188499579|gb|ACD52715.1| 50S ribosomal protein L4 [Clostridium botulinum E3 str. Alaska E43]
gi|243083784|gb|EES49674.1| 50S ribosomal protein L4 [Clostridium botulinum E1 str. 'BoNT E
Beluga']
Length = 206
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 126/203 (62%), Gaps = 5/203 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN++ G + L +VF+V + K +H+VV LA ++QGT S KT +EV G
Sbjct: 1 MPTVGLFNQEGKQVGDIQLNANVFEVEVNKHALHQVVVALLANKRQGTQSAKTRTEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G KPWRQKGTGRAR G++R PQ+ G + PKPR + + + K +RR+ +K AL+++ +
Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIKGGIVFAPKPRDYRVSIPKSMRRVAMKSALTSKVND 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
G+++V E L + KTK + + N KK L+ +E + + +N+ V+V+P
Sbjct: 121 GQMVVLESLSFEAPKTKQFIEMLSAF-NAKKTLIITAES-NEAVYKSARNIQGVSVIPVN 178
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
+NVY +L+ + L++++DAV+KI
Sbjct: 179 NINVYDLLKFEKLIITKDAVSKI 201
>gi|419719246|ref|ZP_14246532.1| 50S ribosomal protein L4 [Lachnoanaerobaculum saburreum F0468]
gi|383304572|gb|EIC95971.1| 50S ribosomal protein L4 [Lachnoanaerobaculum saburreum F0468]
Length = 206
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 118/200 (59%), Gaps = 2/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I V N ++ G + L VF V + + ++H V QLA ++QGT KT SEVSG G+K
Sbjct: 4 ISVFNIEGKEVGSIELNDAVFGVNVNEHLVHMAVVAQLANKRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTG AR G+ R PQ++GG + P PR + I LNKK +R+ LK AL++R E K
Sbjct: 64 PWKQKGTGHARQGSTRSPQWKGGGVVFAPTPRDYTINLNKKEKRIALKSALTSRVLENKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V +D + KTK + N + K +++C + L+ +N++ V +N
Sbjct: 124 IVVDDFAMGEIKTKKMQQTLNNLNVKKALVVCAEN--EKNTVLSVRNIYGVKAASPKTIN 181
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY IL+++T+V S+DAV I
Sbjct: 182 VYDILKYNTVVASKDAVKTI 201
>gi|89893218|ref|YP_516705.1| 50S ribosomal protein L4 [Desulfitobacterium hafniense Y51]
gi|423073127|ref|ZP_17061870.1| 50S ribosomal protein L4 [Desulfitobacterium hafniense DP7]
gi|122483925|sp|Q250N1.1|RL4_DESHY RecName: Full=50S ribosomal protein L4
gi|89332666|dbj|BAE82261.1| 50S ribosomal protein L4 [Desulfitobacterium hafniense Y51]
gi|361855957|gb|EHL07891.1| 50S ribosomal protein L4 [Desulfitobacterium hafniense DP7]
Length = 207
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/199 (39%), Positives = 117/199 (58%), Gaps = 1/199 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + L VF + ++H+ V QLA +++GTHST EV G G+K
Sbjct: 4 VQVVNMQGSPVGELELDEYVFGIEPNTHVMHQAVVGQLASQRRGTHSTLLRGEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R P +RGG + GPKPR + L KKVRRL L+ ALS++ E KL
Sbjct: 64 PWRQKGTGRARAGSIRSPLWRGGAVLFGPKPRKYGFSLPKKVRRLALRSALSSKVNEQKL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V EDL + KT+ +V + +KK L+ + E ++ + +N+ + G+N
Sbjct: 124 IVLEDLSLNEAKTREMVKVLQALNVSKKALIVTDEFM-ETIERSARNIAGIKTTAVEGMN 182
Query: 281 VYSILQHDTLVMSRDAVNK 299
+Y +L D +VM++ AV K
Sbjct: 183 IYDLLNSDVIVMTKAAVTK 201
>gi|397476516|ref|XP_003809645.1| PREDICTED: 39S ribosomal protein L4, mitochondrial [Pan paniscus]
Length = 311
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 95/258 (36%), Positives = 136/258 (52%), Gaps = 8/258 (3%)
Query: 52 SGLSFLASRKFSTTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDK 111
GLS LA T + P +L K + P + Q V + F E
Sbjct: 19 QGLSSLAEEAARATENPEQVASEGLPEPVLRKVELPVPTHRRPV-QAWVESLRGFEQERV 77
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G L DVF R DI+H+V WQ ++ TKT +EV G G+KPW QKGTGRAR
Sbjct: 78 GLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEVRGGGRKPWPQKGTGRAR 137
Query: 172 HGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPS 230
HG++R P +RGG HGP+ P S+ L KVR LGLK+AL+ + A+ L + + LE+P+
Sbjct: 138 HGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRVLGLKVALTVKLAQDDLHIMDSLELPT 197
Query: 231 HKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKL----ATQNLHYVNVLPSVGLNVYSILQ 286
+++ + VLL D HE++ AT L N++P+VGLNV+S+L+
Sbjct: 198 GDPQYLTELAHYRRWGDSVLLVD--LTHEEMPQSIVEATSRLKTFNLIPAVGLNVHSMLK 255
Query: 287 HDTLVMSRDAVNKIVDRM 304
H TLV++ V + D++
Sbjct: 256 HQTLVLTLPTVAFLEDKL 273
>gi|311070764|ref|YP_003975687.1| 50S ribosomal protein L4 [Bacillus atrophaeus 1942]
gi|419823171|ref|ZP_14346731.1| 50S ribosomal protein L4 [Bacillus atrophaeus C89]
gi|310871281|gb|ADP34756.1| 50S ribosomal protein L4 [Bacillus atrophaeus 1942]
gi|388472702|gb|EIM09465.1| 50S ribosomal protein L4 [Bacillus atrophaeus C89]
Length = 207
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 123/203 (60%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N++ G + L VF + + ++ + Q A +QG+H K SEV G
Sbjct: 1 MPKVALYNQNGSTAGDIELNASVFGIEPNESVVFDAILMQRASLRQGSHKVKNRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ KL KKVRRL +K ALS++ +
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAIKSALSSKVVD 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++V EDL + + KTK + + KK L+ ++E + L+ +N+ V V+ +
Sbjct: 121 NNIVVLEDLTLDAVKTKEMAAILKGLSVEKKALIVTAD-VNETVSLSARNIPGVTVVQAD 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
G+NV ++ H+ L++++ AV K+
Sbjct: 180 GINVLDVVNHEKLLITKAAVEKV 202
>gi|365851818|ref|ZP_09392233.1| 50S ribosomal protein L4 [Lactobacillus parafarraginis F0439]
gi|363715759|gb|EHL99182.1| 50S ribosomal protein L4 [Lactobacillus parafarraginis F0439]
Length = 207
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 120/200 (60%), Gaps = 8/200 (4%)
Query: 106 FFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
F +D G + L +F + +++ V Q A R+QGTHS K S V G GKKPW
Sbjct: 6 LFKQDGSQNGTVSLNDSIFGIEPNNNVVFDAVVMQRASRRQGTHSVKNRSAVRGGGKKPW 65
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQKGTGRAR G++R PQ+RGG + GP PRS+A L KKV RL LK LS + ++GK +V
Sbjct: 66 RQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYHLPKKVSRLALKSVLSEKVSDGKFVV 125
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKK--VLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+ LE + KTK +++ + K V+L DG +EK L+ +NL V V+ + G+N
Sbjct: 126 VDALEFDAPKTKEFATLLDKLNVSTKTLVVLEDG---NEKASLSARNLENVKVVSADGIN 182
Query: 281 VYSILQHDTLVMSRDAVNKI 300
I HD +++++ A++++
Sbjct: 183 TLDIADHDKVIITKAALSQV 202
>gi|323454046|gb|EGB09917.1| hypothetical protein AURANDRAFT_14958, partial [Aureococcus
anophagefferens]
Length = 178
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 82/179 (45%), Positives = 109/179 (60%), Gaps = 3/179 (1%)
Query: 119 DVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGP 178
DVF P+R D++H VRWQ KR+Q ++K EVSG+ +K +RQKGTG AR G+LR P
Sbjct: 1 DVFAAPLRVDVLHDCVRWQRNKRRQVHRASKRRGEVSGSTRKLYRQKGTGNARAGSLRSP 60
Query: 179 QFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVN 238
+GG HGP R +LNKK RRL L++ALSA+ EG+L V L+ P KT+ + +
Sbjct: 61 LRKGGAKAHGPAARDFKTELNKKQRRLALRVALSAKLREGRLTVAASLDTPP-KTRVVAD 119
Query: 239 YYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAV 297
+ + L D + E K A +N+ V+VLP VG NVYSILQ D LV+S A
Sbjct: 120 AL-RGRGIRSALFVDDD-LAEDFKTACRNVPLVDVLPQVGANVYSILQRDHLVLSESAA 176
>gi|430748615|ref|YP_007211523.1| 50S ribosomal protein L4 [Thermobacillus composti KWC4]
gi|430732580|gb|AGA56525.1| 50S ribosomal protein L4, bacterial/organelle [Thermobacillus
composti KWC4]
Length = 208
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 120/200 (60%), Gaps = 1/200 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + L+ VF + +H + Q A ++GTH TK SEVSG G+K
Sbjct: 4 VAVYNVSGAQVGEIELSDAVFGIEPHVHALHSAIVLQEAAERRGTHKTKGRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ++GG T+ GP PR++ KL KKVRRL ++ ALSA+ +L
Sbjct: 64 PWRQKGTGRARQGSIRAPQWKGGGTVFGPLPRTYGFKLPKKVRRLAIRSALSAKVGASEL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V ++L++ KTK N ++ +K L+ + + L+ +N+ V + + G+N
Sbjct: 124 IVLDELKLAKPKTKDFAGILNNLKVDRKALVVT-AEYDDNVALSARNIPGVKFIAADGIN 182
Query: 281 VYSILQHDTLVMSRDAVNKI 300
V ++ HD L+M++DA K+
Sbjct: 183 VRDVMVHDKLIMTKDAALKV 202
>gi|154483186|ref|ZP_02025634.1| hypothetical protein EUBVEN_00887 [Eubacterium ventriosum ATCC
27560]
gi|149735994|gb|EDM51880.1| 50S ribosomal protein L4 [Eubacterium ventriosum ATCC 27560]
Length = 206
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 82/200 (41%), Positives = 120/200 (60%), Gaps = 2/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N + G + L+ VF V + + ++H+ V QLA +QGT KT SEVSG G+K
Sbjct: 4 VSVLNMEGSEVGTIELSDAVFGVEVNEHLVHQAVLSQLANNRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ GG + P PR ++ K+NKK +R+ LK AL++R EGKL
Sbjct: 64 PWRQKGTGHARQGSTRSPQWTGGGVVFAPTPRDYSFKMNKKEKRIALKSALTSRVNEGKL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V ++L+ + KTK + NTKK L+ +K A +N+ V + +N
Sbjct: 124 IVVDELKFEAPKTKEFAKVMANL-NTKKALVVLNENDANTVKSA-KNIPTVKTALTNTIN 181
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY IL++DT+V+ + AV I
Sbjct: 182 VYDILKYDTVVVEKAAVATI 201
>gi|16077185|ref|NP_387998.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. subtilis str.
168]
gi|221307929|ref|ZP_03589776.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. subtilis str.
168]
gi|221312250|ref|ZP_03594055.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. subtilis str.
NCIB 3610]
gi|221317184|ref|ZP_03598478.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. subtilis str.
JH642]
gi|221321447|ref|ZP_03602741.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. subtilis str.
SMY]
gi|321313788|ref|YP_004206075.1| 50S ribosomal protein L4 [Bacillus subtilis BSn5]
gi|384173777|ref|YP_005555162.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
gi|402774359|ref|YP_006628303.1| 50S ribosomal protein L4 [Bacillus subtilis QB928]
gi|428277533|ref|YP_005559268.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. natto BEST195]
gi|452916571|ref|ZP_21965193.1| 50S ribosomal protein L4 [Bacillus subtilis MB73/2]
gi|1173050|sp|P42921.1|RL4_BACSU RecName: Full=50S ribosomal protein L4
gi|786154|dbj|BAA08832.1| ribosomal protein L4 [Bacillus subtilis]
gi|1165304|gb|AAC45957.1| L4 [Bacillus subtilis]
gi|2632384|emb|CAB11893.1| ribosomal protein L4 [Bacillus subtilis subsp. subtilis str. 168]
gi|291482490|dbj|BAI83565.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. natto BEST195]
gi|320020062|gb|ADV95048.1| 50S ribosomal protein L4 [Bacillus subtilis BSn5]
gi|349593001|gb|AEP89188.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
gi|402479545|gb|AFQ56054.1| Ribosomal protein L4 [Bacillus subtilis QB928]
gi|407955807|dbj|BAM49047.1| 50S ribosomal protein L4 [Bacillus subtilis BEST7613]
gi|407963078|dbj|BAM56317.1| 50S ribosomal protein L4 [Bacillus subtilis BEST7003]
gi|452114480|gb|EME04880.1| 50S ribosomal protein L4 [Bacillus subtilis MB73/2]
Length = 207
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 121/203 (59%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N++ G + L VF + + ++ + Q A +QGTH K SEV G
Sbjct: 1 MPKVALYNQNGSTAGDIELNASVFGIEPNESVVFDAILMQRASLRQGTHKVKNRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ KL KKVRRL +K LS++ +
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAIKSVLSSKVID 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++V EDL + + KTK + + KK L+ +E + L+ +N+ V V+ +
Sbjct: 121 NNIIVLEDLTLDTAKTKEMAAILKGLSVEKKALIVTADA-NEAVALSARNIPGVTVVEAN 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
G+NV ++ H+ L++++ AV K+
Sbjct: 180 GINVLDVVNHEKLLITKAAVEKV 202
>gi|20808659|ref|NP_623830.1| 50S ribosomal protein L4 [Thermoanaerobacter tengcongensis MB4]
gi|46577279|sp|Q8R7V5.1|RL4_THETN RecName: Full=50S ribosomal protein L4
gi|20517293|gb|AAM25434.1| Ribosomal protein L4 [Thermoanaerobacter tengcongensis MB4]
Length = 206
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 75/197 (38%), Positives = 120/197 (60%), Gaps = 2/197 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+PV N E G + L VF VP+ ++H+ V LA ++QGTHSTKT EV G G+K
Sbjct: 4 VPVYNVKGEQVGEIELKDSVFGVPVNVAVMHQAVVNYLANQRQGTHSTKTRGEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+ G + GPKPR ++ KL KKV+RL LK ALS++ + ++
Sbjct: 64 PWRQKGTGRARQGSIRAPQWIKGGVVFGPKPRDYSYKLPKKVKRLALKSALSSKVRDNEI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V ++ ++ KTK + +++ G + ++L+ +N+ L + LN
Sbjct: 124 IVLDEFKLEQPKTKKVAELLKNFNAKSALIVVPQG--EKNVELSARNMPNAKALYANLLN 181
Query: 281 VYSILQHDTLVMSRDAV 297
Y +L+++ ++++DAV
Sbjct: 182 TYDVLKYEKFIITKDAV 198
>gi|340376317|ref|XP_003386680.1| PREDICTED: 39S ribosomal protein L4, mitochondrial-like [Amphimedon
queenslandica]
Length = 252
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/198 (42%), Positives = 122/198 (61%), Gaps = 3/198 (1%)
Query: 109 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTG 168
E G L VF R DI+ RVV WQLAK++ GT KT EV G G+KPW QKG G
Sbjct: 51 ERLGIFKLDNRVFSCSPRLDILQRVVIWQLAKKRAGTAKVKTRGEVRGGGRKPWPQKGHG 110
Query: 169 RARHGTLRGPQFRGGTTMHGPKPRS-HAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLE 227
+AR G++R P ++GG +HGP+ + ++ L KKV+ LGL ALS + + L+V +DL
Sbjct: 111 QARQGSIRAPHWKGGGVVHGPRGNADYSYTLPKKVKALGLCTALSVKYTQNDLMVVDDLT 170
Query: 228 VPSHKTKFIVNYYNQMENTKKVLLCDGG-CIHEKLKLATQNLHYVNVLPSVGLNVYSILQ 286
V ++ TK ++ + + K VLL DGG ++ + ++ N+ +V++LPS GLNV SIL
Sbjct: 171 VNNNNTKNLLRILD-IHGLKSVLLVDGGDYVNMSIAMSGGNIPHVDLLPSTGLNVVSILS 229
Query: 287 HDTLVMSRDAVNKIVDRM 304
D LV++ AV I +R+
Sbjct: 230 RDKLVLTLGAVRMIENRL 247
>gi|296333114|ref|ZP_06875568.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305672816|ref|YP_003864487.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. spizizenii str.
W23]
gi|350264216|ref|YP_004875523.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|386756697|ref|YP_006229913.1| 50S ribosomal protein L4 [Bacillus sp. JS]
gi|296149730|gb|EFG90625.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305411059|gb|ADM36177.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. spizizenii str.
W23]
gi|349597103|gb|AEP84891.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|384929979|gb|AFI26657.1| 50S ribosomal protein L4 [Bacillus sp. JS]
Length = 207
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 121/203 (59%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N++ G + L VF + + ++ + Q A +QGTH K SEV G
Sbjct: 1 MPKVALYNQNGSTAGDIELNASVFGIEPNESVVFDAILMQRASLRQGTHKVKNRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ KL KKVRRL +K LS++ +
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAIKSVLSSKVND 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++V EDL + + KTK + + KK L+ +E + L+ +N+ V V+ +
Sbjct: 121 NNIIVLEDLTLDTAKTKEMAAILKGLSVEKKALIVTADA-NEAVALSARNIPGVTVVEAN 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
G+NV ++ H+ L++++ AV K+
Sbjct: 180 GINVLDVVNHEKLLITKAAVEKV 202
>gi|239787564|emb|CAX84032.1| 50S ribosomal protein L4 [uncultured bacterium]
Length = 217
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 123/203 (60%), Gaps = 1/203 (0%)
Query: 102 PVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
PV + N+ + L+ F +R D++ RVV +QLAKR+ GT STK EV G G KP
Sbjct: 5 PVVDAANQTSHTVNLSSHAFGCEVRGDLLTRVVHYQLAKRRLGTASTKRRGEVRGGGHKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
+RQKGTG AR GT+R PQ+R G + GP PR +++K+N+K R LGL+ ALSA+ +L+
Sbjct: 65 YRQKGTGNARQGTIRAPQYRTGGVVFGPHPRDYSVKMNRKERALGLRTALSAKREAEELI 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNV 281
V D + KT+ ++ ++ VL+ E+++ + +NL V+V+ G+NV
Sbjct: 125 VLTDFGLTEIKTRSMLQVLTRLNAANSVLIVLPES-DERIERSARNLPGVDVIQVDGVNV 183
Query: 282 YSILQHDTLVMSRDAVNKIVDRM 304
Y +L H+ L+M+ A+ K+ R+
Sbjct: 184 YDLLVHEKLLMTEAALQKLEARV 206
>gi|333373185|ref|ZP_08465101.1| 50S ribosomal protein L4 [Desmospora sp. 8437]
gi|332970764|gb|EGK09744.1| 50S ribosomal protein L4 [Desmospora sp. 8437]
Length = 208
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 121/200 (60%), Gaps = 1/200 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + G + L+ VF + ++H V Q A +++GTH+ K + V G G+K
Sbjct: 4 VNVLDMNGSQVGELELSDSVFGIEPNASVLHDAVVMQQASQRRGTHAVKNRAAVQGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRARHG++R P + GG GP PRS++ KL KKVRRL ++ ALS++ +L
Sbjct: 64 PWKQKGTGRARHGSIRSPIWVGGGVAFGPTPRSYSYKLPKKVRRLAIRSALSSKVKADEL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + L + KTK +V + ++ +K L+ G E + L+ +N+ V + + GLN
Sbjct: 124 VVLDQLTLEQPKTKEMVKVLSNLQADRKALVV-GSGYDENVALSARNIPGVKFIDAQGLN 182
Query: 281 VYSILQHDTLVMSRDAVNKI 300
V +L HD L+++RDAV++I
Sbjct: 183 VLDVLNHDKLIITRDAVSRI 202
>gi|327287992|ref|XP_003228712.1| PREDICTED: 39S ribosomal protein L4, mitochondrial-like [Anolis
carolinensis]
Length = 314
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 89/236 (37%), Positives = 130/236 (55%), Gaps = 6/236 (2%)
Query: 69 PDSSEGAFPSDLLLKKTVL-TPDITIGLH----QDLVIPVTNFFNEDKGFMVLAGDVFDV 123
P S DL+ +L T +I I H Q V + ++ G L DVF V
Sbjct: 52 PRSCSAELQPDLVSSNPILRTCNIAIPKHLAPVQAWVESLKHYDARHMGLADLHPDVFAV 111
Query: 124 PIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGG 183
R DI+H V WQ ++ TKT +EV G G+KPWRQKG+GRARHG++R P +RGG
Sbjct: 112 MPRIDILHTVATWQRNFKRISYAKTKTRAEVRGGGRKPWRQKGSGRARHGSIRSPIWRGG 171
Query: 184 TTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQ 242
HGP+ P S+ L KVR GLK+AL+ + A+ L V + LE+P+ +++++
Sbjct: 172 GVAHGPRGPTSYFYMLPMKVRVQGLKVALTVKLAQDNLHVVDSLEIPTSDPQYLMDLARY 231
Query: 243 MENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVN 298
VL I E +K A +L + +LP GLNV+S+L+++TLV++ D V+
Sbjct: 232 RHWGTSVLFVHVNEIPENIKSAANDLKTITILPITGLNVHSMLKYETLVLTLDTVS 287
>gi|254294439|ref|YP_003060462.1| 50S ribosomal protein L4 [Hirschia baltica ATCC 49814]
gi|254042970|gb|ACT59765.1| ribosomal protein L4/L1e [Hirschia baltica ATCC 49814]
Length = 309
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 119/201 (59%), Gaps = 2/201 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
+ V N + G + L VF + +R DI+ R+VR+QLAKRQ GTH T+T SEV+ T
Sbjct: 3 LDVINLDAKKAGSVELNDAVFGIEDVRPDILQRMVRYQLAKRQAGTHKTQTRSEVNKTKT 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
+ RQKG G ARHG+ P F GG HGPK RSHA L KK R L LK ALSA+ +
Sbjct: 63 RFGRQKGGGGARHGSRNAPIFVGGGVAHGPKVRSHAHDLTKKFRALALKHALSAKVKDSS 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGL 279
L+V E+ V KTK + + + K L+ G + + A +N+ ++VLP GL
Sbjct: 123 LIVLEEAAVSEVKTKALRAQFEAL-GLKNALVIGGESLDDNFAKAARNIPNIDVLPFAGL 181
Query: 280 NVYSILQHDTLVMSRDAVNKI 300
NVY +++ TLV++++AV+ +
Sbjct: 182 NVYDVMRRHTLVLTKEAVDAV 202
>gi|289435897|ref|YP_003465769.1| hypothetical protein lse_2536 [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|422423360|ref|ZP_16500313.1| ribosomal protein L4/L1 family [Listeria seeligeri FSL S4-171]
gi|289172141|emb|CBH28687.1| rplD [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|313636112|gb|EFS01986.1| ribosomal protein L4/L1 family [Listeria seeligeri FSL S4-171]
Length = 207
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 115/191 (60%), Gaps = 1/191 (0%)
Query: 110 DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGR 169
+ G + L VF + + ++ V+ Q A +QGTH K SEV G G+KPWRQKGTGR
Sbjct: 13 NAGEITLNDTVFGIEPNEKVVVDVILSQRASLRQGTHKVKNRSEVRGGGRKPWRQKGTGR 72
Query: 170 ARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVP 229
AR G++R PQ+RGG + GP PRS+A KL KKVRRL +K LS++ E KL+V E L
Sbjct: 73 ARQGSIRSPQWRGGGVVFGPTPRSYAYKLPKKVRRLAIKSILSSKVNEEKLVVLEGLTFD 132
Query: 230 SHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDT 289
+ KTK + + K L+ E ++L+ +NL + V+P+ ++V + +HD
Sbjct: 133 APKTKEFAAFLKNISVDTKALIVVASE-SENVELSARNLQGITVIPAESISVLEVAKHDK 191
Query: 290 LVMSRDAVNKI 300
L++++ AV K+
Sbjct: 192 LIITKAAVEKV 202
>gi|153812866|ref|ZP_01965534.1| hypothetical protein RUMOBE_03273 [Ruminococcus obeum ATCC 29174]
gi|149831078|gb|EDM86167.1| 50S ribosomal protein L4 [Ruminococcus obeum ATCC 29174]
Length = 206
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 118/200 (59%), Gaps = 2/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N + G M L VF V I + ++H V QLA +QGT KT SEVSG G+K
Sbjct: 4 VTVYNMEGNEVGTMELNDAVFGVEINEHLVHLAVVRQLANNRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G++R PQ+ GG + P PR + +K+NKK RR LK AL+++ E KL
Sbjct: 64 PWRQKGTGHARQGSIRAPQWTGGGVVFAPVPRDYEVKMNKKERRAALKSALTSKVQENKL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + L + KTK + ++ K +++ +K+ L+ +N+ V +N
Sbjct: 124 VVVDSLALAEAKTKEMQKVLTNLKADKALVVTADD--DQKVVLSARNIADVQTATVNTIN 181
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY +++H+T+V+++DAV I
Sbjct: 182 VYDVMKHNTVVVTKDAVASI 201
>gi|354475149|ref|XP_003499792.1| PREDICTED: 39S ribosomal protein L4, mitochondrial-like [Cricetulus
griseus]
gi|344240104|gb|EGV96207.1| 39S ribosomal protein L4, mitochondrial [Cricetulus griseus]
Length = 294
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 119/205 (58%), Gaps = 7/205 (3%)
Query: 105 NFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQ 164
F E G L DVF R DI+H+V WQ ++ TKT +EVSG G+KPW+Q
Sbjct: 71 GFEQERVGLAELHPDVFATAPRLDILHQVATWQKNFKRISYAKTKTRAEVSGGGRKPWQQ 130
Query: 165 KGTGRARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVF 223
KG+GRARHG++R P +RGG HGP+ P S+ L KVR LGLK AL+ + + L +
Sbjct: 131 KGSGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKAALTVKLMQDDLHIV 190
Query: 224 EDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEK----LKLATQNLHYVNVLPSVGL 279
+ LE+P+ +++ VLL D HE+ + AT L N++P+VGL
Sbjct: 191 DSLELPTADPQYLTELAQYRHWGSSVLLVD--LTHEEAPKNVVAATSRLKSFNLIPAVGL 248
Query: 280 NVYSILQHDTLVMSRDAVNKIVDRM 304
NVYS+L+H TLV++ ++ + D++
Sbjct: 249 NVYSMLKHQTLVLTLPSIAFLEDKL 273
>gi|148693203|gb|EDL25150.1| mitochondrial ribosomal protein L4, isoform CRA_d [Mus musculus]
Length = 302
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 94/252 (37%), Positives = 137/252 (54%), Gaps = 17/252 (6%)
Query: 66 ILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLAGDVF---- 121
I P S G D +L+K L + Q V + F E G L DVF
Sbjct: 34 ISEPRDSAGLL--DPVLRKCELRIPVHRRPVQAWVESLRGFEQERIGLAELHPDVFATAP 91
Query: 122 ----DVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRG 177
+ R DI+H+V WQ R+ +TKT +EVSG G+KPW+QKG+GRARHG++R
Sbjct: 92 RWSLTMKYRLDIVHQVAIWQRNFRRISYANTKTRAEVSGGGRKPWQQKGSGRARHGSIRS 151
Query: 178 PQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFI 236
P +RGG HGP+ P S+ L KVR LGLK+AL+ + + L + + LE+P+ +++
Sbjct: 152 PLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLMQDDLHIVDSLELPTADPQYL 211
Query: 237 VNYYNQMENTKKVLLCDGGCIHEKLK----LATQNLHYVNVLPSVGLNVYSILQHDTLVM 292
VLL D HE++ AT L+ N++P+VGLNVYS+L+H TLV+
Sbjct: 212 TELAQYRHWGSSVLLVD--LTHEEMPKNVVAATSGLNSFNLIPAVGLNVYSMLKHQTLVL 269
Query: 293 SRDAVNKIVDRM 304
+ +V + D++
Sbjct: 270 TLPSVAFLEDKL 281
>gi|47212296|emb|CAF90559.1| unnamed protein product [Tetraodon nigroviridis]
Length = 302
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 123/199 (61%), Gaps = 2/199 (1%)
Query: 108 NEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGT 167
+E G L DVF VP R DI+H V WQ ++ TK +EV G G+KPWRQKG+
Sbjct: 83 SEPVGVAHLHPDVFAVPPRLDILHMVETWQRNFKRISHAHTKVRAEVRGGGRKPWRQKGS 142
Query: 168 GRARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL 226
GRARHG++R P +RGG HGP+ P S+ L KVR LGLK+ALS++ A+ L V E L
Sbjct: 143 GRARHGSIRSPLWRGGGVSHGPRGPTSYYYMLPMKVRVLGLKVALSSKLAQSHLHVVESL 202
Query: 227 EVPSHKTKFIVNYYNQMENTKKVLLC-DGGCIHEKLKLATQNLHYVNVLPSVGLNVYSIL 285
+PS +++++ + + +LL + + E + AT L +NV+P++GLNV+S+L
Sbjct: 203 NLPSPDPQYLLDLARRRHWGESLLLVHESEELPEDVLQATATLKSINVIPALGLNVHSLL 262
Query: 286 QHDTLVMSRDAVNKIVDRM 304
+H LV++ + + + D++
Sbjct: 263 KHQALVLTLETLRFLEDKL 281
>gi|357630814|gb|EHJ78691.1| ribosomal protein L4 [Danaus plexippus]
Length = 285
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 82/195 (42%), Positives = 116/195 (59%), Gaps = 2/195 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G L V+ R DIIH+ V WQ R TKT +EV G GKKPW QKG GRAR
Sbjct: 73 GLFELHPLVYAAAPRIDIIHKNVVWQRKYRWVSWAHTKTRAEVRGGGKKPWPQKGLGRAR 132
Query: 172 HGTLRGPQFRGGTTMHGPKP-RSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPS 230
HG++R P +RGG HGP+ ++H L+ R GL LSA+ A+ L V DLE+P+
Sbjct: 133 HGSIRSPLWRGGGIAHGPRSGKTHFYMLDIYSRLHGLTSTLSAKFAQDDLHVVRDLELPT 192
Query: 231 HKTKFIVNYYNQMENTKKVLLCDGGCIHEK-LKLATQNLHYVNVLPSVGLNVYSILQHDT 289
++++++ + VLL D + + +AT +L YVN++P GLNVYS+L+HDT
Sbjct: 193 DESEYLIELIEKRNWGPSVLLVDDTDYAPRNITVATDSLQYVNIMPVYGLNVYSMLKHDT 252
Query: 290 LVMSRDAVNKIVDRM 304
LV+++ A KI +R+
Sbjct: 253 LVLTQAAAEKIEERI 267
>gi|160881784|ref|YP_001560752.1| 50S ribosomal protein L4 [Clostridium phytofermentans ISDg]
gi|189029497|sp|A9KJJ3.1|RL4_CLOPH RecName: Full=50S ribosomal protein L4
gi|160430450|gb|ABX44013.1| ribosomal protein L4/L1e [Clostridium phytofermentans ISDg]
Length = 206
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 122/200 (61%), Gaps = 2/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G + L +F V + + ++H V QLA ++QGT S KT +EVSG G+K
Sbjct: 4 VKVYNIEGKEVGSLELNDAIFGVEVNEHLMHMAVVSQLANKRQGTQSAKTRAEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ++GG + PKPR ++ K+N+K + L +K AL++R KL
Sbjct: 64 PWRQKGTGHARQGSTRSPQWKGGGVVFAPKPRDYSFKMNRKEKSLAIKSALTSRVEAQKL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + + + KTK ++ K +++ D E + L+ +N+ V S +N
Sbjct: 124 IVLDSMNMDEIKTKKFKAVLENLKVNKALVVLDKK--DENVILSARNIPTVRTATSNAIN 181
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY I+++DTLV+++DAV +I
Sbjct: 182 VYDIVKYDTLVITKDAVAQI 201
>gi|374709481|ref|ZP_09713915.1| 50S ribosomal protein L4 [Sporolactobacillus inulinus CASD]
Length = 207
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 124/203 (61%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNE---DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P F++ + G + LA VF + + +I++ V Q A +QGTH+ K S V G
Sbjct: 1 MPKLTVFDQKGAEVGAVELADAVFGIEPNEHVIYQAVVMQQASLRQGTHAVKNRSAVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPW+QKGTGRAR G++R PQ+ GG T+ GP PRS++ KL KKVRRL ++ LS +A E
Sbjct: 61 GRKPWKQKGTGRARQGSIRSPQWVGGGTVFGPTPRSYSYKLPKKVRRLAIRSVLSDKAGE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
L+V + L++ + KTK I + + +K L+ I E L+++NL V VL +
Sbjct: 121 NNLIVLDALKIEAPKTKEITALLSNLSVAEKALIVTND-IDETAVLSSRNLPGVKVLTAN 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
+NV ++ HD L++++DA K+
Sbjct: 180 EVNVLDVIAHDKLIVTKDAAAKL 202
>gi|431805757|ref|YP_007232658.1| 50S ribosomal protein L4 [Liberibacter crescens BT-1]
gi|430799732|gb|AGA64403.1| LSU ribosomal protein L4p (L1e) [Liberibacter crescens BT-1]
Length = 206
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 120/193 (62%), Gaps = 1/193 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + ++ +F + ++D+I V+RWQLA+R+ GTH +K+ SE+S TG K + QK TGRAR
Sbjct: 14 GEISVSESIFGLSPKEDLIAAVIRWQLARRRSGTHKSKSRSEISYTGSKMYAQKRTGRAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
H + R PQFRGG GP H + +KVR L L A+S++ +L+ ++L
Sbjct: 74 HSSSRAPQFRGGGKAFGPVVIDHEYTIPRKVRSLALCHAISSKIQSEDVLIIDNLVSQEA 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KTK+I +++ +E L+ DG ++E KLA+QN+ +++LP+ G+NVY IL+ LV
Sbjct: 134 KTKYIASFFKGLE-LYNALIVDGFQLNENFKLASQNIPNIDLLPAQGINVYDILRRRKLV 192
Query: 292 MSRDAVNKIVDRM 304
+S AV + R+
Sbjct: 193 LSISAVKALEGRL 205
>gi|125986720|ref|XP_001357123.1| GA19152 [Drosophila pseudoobscura pseudoobscura]
gi|195160102|ref|XP_002020915.1| GL14082 [Drosophila persimilis]
gi|54645450|gb|EAL34189.1| GA19152 [Drosophila pseudoobscura pseudoobscura]
gi|194117865|gb|EDW39908.1| GL14082 [Drosophila persimilis]
Length = 293
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 114/195 (58%), Gaps = 2/195 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L DVF R D+I + WQ R KT +EV G G+KPW QKG GRAR
Sbjct: 78 GLIELHPDVFAAQPRVDVIQENIEWQRKYRYVSLAHAKTRAEVRGGGRKPWPQKGMGRAR 137
Query: 172 HGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPS 230
HG++R P F+GG +HGP+ P +H L R +GL LS + A+ L V E++++P+
Sbjct: 138 HGSIRSPLFKGGGVIHGPRSPTTHFYMLPFYKRVMGLTSTLSVKLAQDDLHVIENVDIPT 197
Query: 231 HKTKFIVNYYNQMENTKKVLLCDGGCIH-EKLKLATQNLHYVNVLPSVGLNVYSILQHDT 289
+FI + + VL+ D + E + AT +L YVN++P+ GLNVYS+L+HDT
Sbjct: 198 RDAQFIKDLIAERNWGPSVLIVDKEYMFPENICYATDDLGYVNLMPAFGLNVYSMLKHDT 257
Query: 290 LVMSRDAVNKIVDRM 304
LV++ DAV + R+
Sbjct: 258 LVLTVDAVKHLEQRL 272
>gi|110678719|ref|YP_681726.1| 50S ribosomal protein L4 [Roseobacter denitrificans OCh 114]
gi|123172736|sp|Q16AF3.1|RL4_ROSDO RecName: Full=50S ribosomal protein L4
gi|109454835|gb|ABG31040.1| ribosomal protein L4 [Roseobacter denitrificans OCh 114]
Length = 205
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 79/185 (42%), Positives = 113/185 (61%), Gaps = 2/185 (1%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
+F + R DI+HRVVRWQ Q GTH KT SEV+ + KK +RQKGTG ARHG P
Sbjct: 22 LFGLEPRADILHRVVRWQRNNAQAGTHKVKTRSEVNYSTKKIYRQKGTGGARHGARSAPI 81
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
FRGG GPK RSH +L KK R+LGL ALSA+ G+L++ +++ KT +
Sbjct: 82 FRGGGVYKGPKVRSHGHELTKKFRKLGLCHALSAKMKAGELVIIDEVS-SDGKTAALAKQ 140
Query: 240 YNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNK 299
+ K+ L+ DG ++E A +N+ +++LP++G NVY IL+ DTLV+++ V
Sbjct: 141 VANL-GWKRALIIDGATVNETFAQAARNIDGLDILPTMGANVYDILKRDTLVITKAGVEA 199
Query: 300 IVDRM 304
+ R+
Sbjct: 200 LEARL 204
>gi|289742297|gb|ADD19896.1| mitochondrial ribosomal protein L4 [Glossina morsitans morsitans]
Length = 301
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 92/254 (36%), Positives = 138/254 (54%), Gaps = 4/254 (1%)
Query: 61 KFSTTILTPDSSEGAFPSDLLLKKTVLT--PDITIGLHQDLVIPVTNFFNEDKGFMVLAG 118
K + T LT + + A + ++L ++ T P G Q + + + G + L
Sbjct: 33 KENETQLTKVTDKTAREAPIILTQSFDTYEPAQVTGCRQVWIENIDDVQERKLGIIELHP 92
Query: 119 DVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGP 178
DVF R D+IH + WQ R +KT +EV G G+KPW QKGTGRARHG++R P
Sbjct: 93 DVFATQPRVDVIHENIEWQRKYRFVSFAHSKTRAEVRGGGRKPWPQKGTGRARHGSIRSP 152
Query: 179 QFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIV 237
FRGG HGP+ P +H L R +GL LS + A+ L + +D+E+PS +F+
Sbjct: 153 LFRGGGRAHGPRSPTTHFYMLPFFKRVMGLTATLSVKLAQDDLHIIKDVEIPSGDHQFLK 212
Query: 238 NYYNQMENTKKVLLCDGGCIH-EKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDA 296
+ + VL+ D I E + AT L YVN++P+ LN YS+L+HDTLV++ +A
Sbjct: 213 DLIIERNWGPSVLIVDKEDIFPENICEATDKLGYVNLMPAYSLNTYSMLKHDTLVLTINA 272
Query: 297 VNKIVDRMHTPINR 310
V I +R+ ++R
Sbjct: 273 VKHIEERLLYQLHR 286
>gi|259500893|ref|ZP_05743795.1| 50S ribosomal protein L4 [Lactobacillus iners DSM 13335]
gi|302190654|ref|ZP_07266908.1| 50S ribosomal protein L4 [Lactobacillus iners AB-1]
gi|309803686|ref|ZP_07697776.1| 50S ribosomal protein L4 [Lactobacillus iners LactinV 11V1-d]
gi|309804951|ref|ZP_07699009.1| 50S ribosomal protein L4 [Lactobacillus iners LactinV 09V1-c]
gi|309806704|ref|ZP_07700699.1| 50S ribosomal protein L4 [Lactobacillus iners LactinV 03V1-b]
gi|309808465|ref|ZP_07702364.1| 50S ribosomal protein L4 [Lactobacillus iners LactinV 01V1-a]
gi|309809135|ref|ZP_07703008.1| 50S ribosomal protein L4 [Lactobacillus iners SPIN 2503V10-D]
gi|312871314|ref|ZP_07731412.1| 50S ribosomal protein L4 [Lactobacillus iners LEAF 3008A-a]
gi|312872623|ref|ZP_07732688.1| 50S ribosomal protein L4 [Lactobacillus iners LEAF 2062A-h1]
gi|312874014|ref|ZP_07734049.1| 50S ribosomal protein L4 [Lactobacillus iners LEAF 2052A-d]
gi|312874786|ref|ZP_07734805.1| 50S ribosomal protein L4 [Lactobacillus iners LEAF 2053A-b]
gi|315654025|ref|ZP_07906941.1| 50S ribosomal protein L4 [Lactobacillus iners ATCC 55195]
gi|325912358|ref|ZP_08174754.1| 50S ribosomal protein L4 [Lactobacillus iners UPII 143-D]
gi|325913218|ref|ZP_08175587.1| 50S ribosomal protein L4 [Lactobacillus iners UPII 60-B]
gi|329920653|ref|ZP_08277340.1| 50S ribosomal protein L4 [Lactobacillus iners SPIN 1401G]
gi|349611927|ref|ZP_08891157.1| 50S ribosomal protein L4 [Lactobacillus sp. 7_1_47FAA]
gi|259167587|gb|EEW52082.1| 50S ribosomal protein L4 [Lactobacillus iners DSM 13335]
gi|308164284|gb|EFO66541.1| 50S ribosomal protein L4 [Lactobacillus iners LactinV 11V1-d]
gi|308165711|gb|EFO67936.1| 50S ribosomal protein L4 [Lactobacillus iners LactinV 09V1-c]
gi|308166884|gb|EFO69068.1| 50S ribosomal protein L4 [Lactobacillus iners LactinV 03V1-b]
gi|308168293|gb|EFO70412.1| 50S ribosomal protein L4 [Lactobacillus iners LactinV 01V1-a]
gi|308170580|gb|EFO72600.1| 50S ribosomal protein L4 [Lactobacillus iners SPIN 2503V10-D]
gi|311089531|gb|EFQ47956.1| 50S ribosomal protein L4 [Lactobacillus iners LEAF 2053A-b]
gi|311090354|gb|EFQ48763.1| 50S ribosomal protein L4 [Lactobacillus iners LEAF 2052A-d]
gi|311091665|gb|EFQ50044.1| 50S ribosomal protein L4 [Lactobacillus iners LEAF 2062A-h1]
gi|311093328|gb|EFQ51674.1| 50S ribosomal protein L4 [Lactobacillus iners LEAF 3008A-a]
gi|315488721|gb|EFU78367.1| 50S ribosomal protein L4 [Lactobacillus iners ATCC 55195]
gi|325475829|gb|EGC78999.1| 50S ribosomal protein L4 [Lactobacillus iners UPII 143-D]
gi|325477482|gb|EGC80625.1| 50S ribosomal protein L4 [Lactobacillus iners UPII 60-B]
gi|328935911|gb|EGG32371.1| 50S ribosomal protein L4 [Lactobacillus iners SPIN 1401G]
gi|348608392|gb|EGY58377.1| 50S ribosomal protein L4 [Lactobacillus sp. 7_1_47FAA]
Length = 204
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 126/202 (62%), Gaps = 3/202 (1%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ I V + + G + L +F+V ++ + Q A ++QGTH+TK S VSG G
Sbjct: 1 MAIKVIDQKGKSVGEVDLNKCIFEVEPNDSVVFEAIIRQRAGKRQGTHATKNRSAVSGGG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KKPW+QKGTGRAR G++R PQ+RGG T+ GP PRS+ + + +K RRL +K LS + A+G
Sbjct: 61 KKPWKQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYKVDMPRKARRLAIKSVLSQKVADG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
L+V + L + + KTK + ++ ++ + KVL+ + ++L+ +NL V V+P G
Sbjct: 121 NLIVLDQLTLATPKTKDLKAIFSAIKVSGKVLVVSD---DKNVQLSGKNLPQVKVVPVNG 177
Query: 279 LNVYSILQHDTLVMSRDAVNKI 300
LNV + ++ L++++DA+ +I
Sbjct: 178 LNVVDAVDYEKLLLTQDAIKRI 199
>gi|158319544|ref|YP_001512051.1| 50S ribosomal protein L4 [Alkaliphilus oremlandii OhILAs]
gi|166990945|sp|A8MLE1.1|RL4_ALKOO RecName: Full=50S ribosomal protein L4
gi|158139743|gb|ABW18055.1| ribosomal protein L4/L1e [Alkaliphilus oremlandii OhILAs]
Length = 207
Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 123/200 (61%), Gaps = 1/200 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N + + L+ +VF V + + ++ VV+ QLA R+QGT S KT +EV G G+K
Sbjct: 4 VAIYNVSGQQVSEIELSENVFGVEVNEHAMYEVVKNQLANRRQGTQSAKTRAEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G++R P + GG + PKPR ++ + KKVRRL LK AL+++ +L
Sbjct: 64 PWKQKGTGRARVGSIRSPLWVGGGIVFAPKPRDYSYTIPKKVRRLALKSALTSKVNSNEL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V ++L++ + KTK +VN + KK L+ G +K A N+ V +N
Sbjct: 124 IVLDELKLDAPKTKEMVNILKNLNVDKKALIVMGEKSEAVIKSAN-NIQGVQTALVNTIN 182
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY IL++D L++++DAV K+
Sbjct: 183 VYDILKYDKLIITKDAVQKV 202
>gi|62857671|ref|NP_001017222.1| mitochondrial ribosomal protein L4 [Xenopus (Silurana) tropicalis]
gi|89268693|emb|CAJ82705.1| mitochondrial ribosomal protein L4 [Xenopus (Silurana) tropicalis]
Length = 298
Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 151/264 (57%), Gaps = 25/264 (9%)
Query: 66 ILTPDSSEGAFPSDLLL--------KKTVLTP-DITIGLHQDLVIPVTNFF--------- 107
+L+ SSE A PS+L+L KT P D++ + + +PV +
Sbjct: 14 LLSTLSSESALPSNLILPPGLKDGPSKTQRPPVDVSQPVIRPCRVPVPSHLSPKPVWLES 73
Query: 108 -----NEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
++ G + L DVF VP R DI+H+VV WQ ++ KT +EV G GKKP
Sbjct: 74 LRHPDDQPLGLVHLHPDVFTVPPRIDILHQVVTWQRNFKRISHAKVKTRAEVRGGGKKPR 133
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
+QKG+GRAR G++R P +RGG HGP+ P S+ + K+R GLKIAL+A+ A+ L
Sbjct: 134 QQKGSGRARQGSIRSPLWRGGGVAHGPRGPTSYYYMMPMKMRVQGLKIALTAKLAQDDLH 193
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCD-GGCIHEKLKLATQNLHYVNVLPSVGLN 280
V + LE+ + +++V+ + + VL+ D + E L AT NL +NV+P++GL+
Sbjct: 194 VIDSLEISTPDPQYLVDLIKHRQWGESVLIVDVNENLPENLFNATVNLKKINVIPAIGLS 253
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
V+ +L+HDT+V++ AV+ + +++
Sbjct: 254 VFGMLKHDTVVLTVGAVDFLEEKL 277
>gi|255526579|ref|ZP_05393486.1| ribosomal protein L4/L1e [Clostridium carboxidivorans P7]
gi|296187267|ref|ZP_06855663.1| ribosomal protein L4/L1 family protein [Clostridium carboxidivorans
P7]
gi|255509687|gb|EET86020.1| ribosomal protein L4/L1e [Clostridium carboxidivorans P7]
gi|296048138|gb|EFG87576.1| ribosomal protein L4/L1 family protein [Clostridium carboxidivorans
P7]
Length = 206
Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 81/203 (39%), Positives = 126/203 (62%), Gaps = 5/203 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN++ G + L+ +VF V + + +H+VV LA ++QGT S KT SEVSG
Sbjct: 1 MPTVGLFNKEGKKVGDVQLSDNVFGVEVNQYALHQVVVALLANKRQGTQSAKTRSEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G KPWRQKGTGRAR G++R PQ+ G + KPR + + K +RR+ +K AL+++ +
Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIHGGMVFAVKPRDYRTSVPKSMRRVAMKSALTSKVND 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+++V E LE+ + KTK +V + + N KK L+ K A +N+ V +LP
Sbjct: 121 EQIVVLESLELEAPKTKEVVKMLDAL-NAKKTLIVTSESNENAYKSA-RNIQGVEILPVN 178
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
LNVY +L+++ LV+++DAV+KI
Sbjct: 179 NLNVYDLLKYEKLVITKDAVSKI 201
>gi|284049256|ref|YP_003399595.1| 50S ribosomal protein L4 [Acidaminococcus fermentans DSM 20731]
gi|283953477|gb|ADB48280.1| ribosomal protein L4/L1e [Acidaminococcus fermentans DSM 20731]
Length = 209
Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 77/183 (42%), Positives = 117/183 (63%), Gaps = 4/183 (2%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
VF V + ++H+ V Q A +QGTH+TKT V G G+KPW+QKGTGRAR G++R P
Sbjct: 24 VFGVEFNEAVVHQAVVMQQANERQGTHATKTRGMVRGGGRKPWKQKGTGRARAGSVRSPL 83
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
+ GG T+ GP PRSHA + +K RRL ++ ALSA+ AEG L+V ++L + KTK V
Sbjct: 84 WVGGGTVFGPAPRSHAKDMPRKARRLAIRCALSAKVAEGALVVVDNLTFDAPKTKDAVAM 143
Query: 240 YNQME--NTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAV 297
E + K +++ DG +E ++ +++N+ V L + LNVY IL + +++++DAV
Sbjct: 144 LTGFEAADKKALIITDGE--NENVEKSSRNIEKVKALSNDCLNVYDILNAEKVLLAKDAV 201
Query: 298 NKI 300
+I
Sbjct: 202 ARI 204
>gi|404372642|ref|ZP_10977937.1| 50S ribosomal protein L4 [Clostridium sp. 7_2_43FAA]
gi|226911220|gb|EEH96421.1| 50S ribosomal protein L4 [Clostridium sp. 7_2_43FAA]
Length = 206
Score = 147 bits (370), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 125/203 (61%), Gaps = 5/203 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN++ G + L +VF V + D +H+VV LA ++QGT S KT +EV G
Sbjct: 1 MPTVGLFNQEGKQVGDIQLNDNVFGVEVNTDAMHQVVVALLANKRQGTQSAKTRAEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G KPWRQKGTGRAR G++R PQ+ G + PKPR + + + K +RR+ +K AL+++ +
Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIKGGIVFAPKPRDYRMSVPKSMRRVAMKSALTSKVQD 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
G+++V E L + KTK +V + KK L+ G +E L + +N+ V ++P
Sbjct: 121 GQMVVLETLAFEAPKTKKMVEVLKAFD-AKKTLIITGES-NEVLYKSARNIADVQIMPVN 178
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
+NVY +L+ + L++++DAV+KI
Sbjct: 179 NINVYDLLKFEKLIITKDAVSKI 201
>gi|260589278|ref|ZP_05855191.1| ribosomal protein L4/L1 family protein [Blautia hansenii DSM 20583]
gi|331082684|ref|ZP_08331807.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 6_1_63FAA]
gi|260540359|gb|EEX20928.1| ribosomal protein L4/L1 family protein [Blautia hansenii DSM 20583]
gi|330400303|gb|EGG79945.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 6_1_63FAA]
Length = 206
Score = 147 bits (370), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 122/202 (60%), Gaps = 6/202 (2%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G M L VF V I ++H V QLA +QGT KT SEVSG G+K
Sbjct: 4 VSVYNMEGKEVGTMELNDAVFGVEINDHLVHLAVVRQLANNRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ GG + P PR +++K+NKK RR LK L++R E KL
Sbjct: 64 PWRQKGTGHARQGSTRSPQWAGGGVVFAPTPRDYSLKMNKKERRAALKSVLTSRVQENKL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKK-VLLCDGGCIHEKLKLATQNL-HYVNVLPSVG 278
+V ++L++ KTK + N N + +K V+L D + L+T+N+ V LP+
Sbjct: 124 IVLDELKLDEVKTKAMQNVLNNLNVSKALVVLADNDA---NVVLSTRNIPDVVTALPNT- 179
Query: 279 LNVYSILQHDTLVMSRDAVNKI 300
+NVY +L+++T+++++ + I
Sbjct: 180 INVYDVLKYNTVILTKASAAAI 201
>gi|365873446|ref|ZP_09412979.1| 50S ribosomal protein L4, bacterial/organelle [Thermanaerovibrio
velox DSM 12556]
gi|363983533|gb|EHM09740.1| 50S ribosomal protein L4, bacterial/organelle [Thermanaerovibrio
velox DSM 12556]
Length = 208
Score = 147 bits (370), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 121/200 (60%), Gaps = 7/200 (3%)
Query: 104 TNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWR 163
NF E G + L+ VF P+ +H+VV LA + GTH TK +VSG G+KPWR
Sbjct: 7 VNFNGEVIGEVELSEAVFGAPVHVPAMHQVVVAHLANCRVGTHDTKDRGDVSGGGRKPWR 66
Query: 164 QKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVF 223
QK TGRAR G++R P + GG HGP PR + K+NKKVRRL L+ AL+ +A E +LV
Sbjct: 67 QKHTGRARQGSIRSPLWVGGGVAHGPHPRDYHQKVNKKVRRLALRSALTLKAKEDNMLVI 126
Query: 224 EDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEK---LKLATQNLHYVNVLPSVGLN 280
+ ++ + KTK ++ + N+++ KK LL +++K ++ + N+ VL LN
Sbjct: 127 DAFQMEAPKTKVMLEFLNKVQAGKKPLL----VVNDKDPNVRKSAGNIPGAMVLHVDSLN 182
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY IL HD L+++ DAV KI
Sbjct: 183 VYDILNHDRLIVTADAVRKI 202
>gi|403071308|ref|ZP_10912640.1| 50S ribosomal protein L4 [Oceanobacillus sp. Ndiop]
Length = 207
Score = 147 bits (370), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 116/202 (57%), Gaps = 4/202 (1%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +D G + L VF + ++H V Q A +QGTH+ K S+V G
Sbjct: 1 MPKVALLKQDGSNAGDIELNDSVFGIEPNTHVLHEAVVMQRASMRQGTHAVKNRSDVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+ GG + GP PRS++ KL KKVRRL LK ALS++ E
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWVGGGVVFGPTPRSYSYKLPKKVRRLALKSALSSKVKE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
LLV + + + + KTK ++ + + KVL+ E + + NL V VL
Sbjct: 121 DSLLVLDSIAMDAPKTKEVIKMLDALNVDTKVLIVLADK-DETVIRSANNLQSVKVLTVE 179
Query: 278 GLNVYSILQHDTLVMSRDAVNK 299
+NV +L HD L++S+DA +K
Sbjct: 180 EMNVLDLLTHDKLIISKDAADK 201
>gi|398309219|ref|ZP_10512693.1| 50S ribosomal protein L4 [Bacillus mojavensis RO-H-1]
gi|443634988|ref|ZP_21119159.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. inaquosorum KCTC
13429]
gi|443345179|gb|ELS59245.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. inaquosorum KCTC
13429]
Length = 207
Score = 147 bits (370), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 121/203 (59%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N++ G + L VF + + ++ + Q A +QG+H K SEV G
Sbjct: 1 MPKVALYNQNGSTAGDIELNASVFGIEPNESVVFDAILMQRASLRQGSHKVKNRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ KL KKVRRL +K LS++ +
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAIKSVLSSKVND 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++V EDL + + KTK + + KK L+ +E + L+ +N+ V V+ +
Sbjct: 121 NNIIVLEDLTLDTAKTKEMAAILKGLSVEKKALIVTADA-NEAVALSARNIPGVTVVEAN 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
G+NV ++ H+ L++++ AV K+
Sbjct: 180 GINVLDVVNHEKLLITKAAVEKV 202
>gi|269122980|ref|YP_003305557.1| 50S ribosomal protein L4 [Streptobacillus moniliformis DSM 12112]
gi|268314306|gb|ACZ00680.1| ribosomal protein L4/L1e [Streptobacillus moniliformis DSM 12112]
Length = 214
Score = 147 bits (370), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 128/209 (61%), Gaps = 8/209 (3%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
D + V N E+KG ++ ++F + K ++H V+ +LA + GT STKT EVSG
Sbjct: 3 DFNLKVYNLNGEEKGVTTVSSEIFGLEPNKYVMHEVLTAELAASRAGTASTKTRGEVSGG 62
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KP+RQKGTGRAR G+ R P GG +HGPKPR++ K+NKKVR+L LK AL+ R
Sbjct: 63 GRKPFRQKGTGRARQGSTRAPHMVGGGVVHGPKPRNYDKKVNKKVRKLALKSALAVRIQN 122
Query: 218 GKLLVFEDLEVPSHKTKFIVNY---YNQMENTKKVLLCDGGCIHE---KLKLATQNLHYV 271
G ++V ED + + KTK VN+ N +E+ K ++ D + + L L+ +N+
Sbjct: 123 GDVIVLEDYMLDTPKTKAFVNFTEKVNMVEDKKLFIVND--YLEDADWNLYLSVRNIEKT 180
Query: 272 NVLPSVGLNVYSILQHDTLVMSRDAVNKI 300
+L L+VY++L+ + +V++++A+ I
Sbjct: 181 EILDPRELSVYALLKFNKVVITKEALATI 209
>gi|304405615|ref|ZP_07387274.1| ribosomal protein L4/L1e [Paenibacillus curdlanolyticus YK9]
gi|304345654|gb|EFM11489.1| ribosomal protein L4/L1e [Paenibacillus curdlanolyticus YK9]
Length = 207
Score = 147 bits (370), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 119/200 (59%), Gaps = 1/200 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N G + LA VF + ++H V Q A ++GTH TK SEV G G+K
Sbjct: 4 VALYNVSGSQVGEVELADSVFGIQPNTHVLHSAVLLQQAAERRGTHKTKGRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G++R PQ+ GG T+ GP PRS+ KL +KVRRL +K ALS + ++
Sbjct: 64 PWKQKGTGRARQGSIRSPQWVGGGTVFGPTPRSYGFKLPRKVRRLAIKSALSTKVISNEI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + L + + KTK N ++ +K L+ + + L+ +N+ V + + G+N
Sbjct: 124 VVLDQLALATPKTKEFAAILNNLKVARKALVVTANY-EDNVALSARNIPGVKFVAAEGIN 182
Query: 281 VYSILQHDTLVMSRDAVNKI 300
V +LQ+D L+++++AV K+
Sbjct: 183 VLDVLQYDRLIITKEAVEKV 202
>gi|254995178|ref|ZP_05277368.1| 50S ribosomal protein L4 [Anaplasma marginale str. Mississippi]
gi|255003352|ref|ZP_05278316.1| 50S ribosomal protein L4 [Anaplasma marginale str. Puerto Rico]
gi|255004476|ref|ZP_05279277.1| 50S ribosomal protein L4 [Anaplasma marginale str. Virginia]
Length = 178
Score = 147 bits (370), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 114/177 (64%), Gaps = 3/177 (1%)
Query: 129 IIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHG 188
++ VV WQLAKR+ GTH T+ IS+VSGT KP+RQK TGRAR G+LR PQFRGG + G
Sbjct: 1 MLRDVVTWQLAKRRAGTHKTRCISDVSGTTAKPYRQKHTGRARQGSLRSPQFRGGAVVFG 60
Query: 189 PKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFI-VNYYNQMENTK 247
P RSHA LNKKVRRLGLK+ALS + ++ KL+V +D + KT V + N +
Sbjct: 61 PVNRSHAYSLNKKVRRLGLKVALSMKVSDSKLVVLDDSGLLLEKTADAHVAFGNFGAHGS 120
Query: 248 KVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNKIVDRM 304
+++ + +K+ A +NL V++L G+NV IL+HD ++++ V + R+
Sbjct: 121 YLVVAET--YEDKVMCACRNLPNVDLLKYAGINVLDILRHDCVILTVGTVKCLESRL 175
>gi|373455303|ref|ZP_09547139.1| 50S ribosomal protein L4 [Dialister succinatiphilus YIT 11850]
gi|371934943|gb|EHO62716.1| 50S ribosomal protein L4 [Dialister succinatiphilus YIT 11850]
Length = 208
Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 117/200 (58%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N ++ G + L VF V + +IH+ V Q+A + GTH+TKT V G GKK
Sbjct: 4 VKLYNVAGQETGEIELNDSVFGVDYNEAVIHQAVVRQMANERLGTHATKTRGLVRGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G++R P + GG T+ GP PRSHA + KK R+L +K ALS + +L
Sbjct: 64 PWKQKGTGRARVGSIRSPLWVGGGTVFGPTPRSHAKAMPKKARQLAVKSALSEKLRANEL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + + + KTK +V + K L+ DGG E L+ +N+ V G+N
Sbjct: 124 VVIDTIHFDAPKTKEVVKMLSAFNAAGKALIVDGGDAAENTVLSARNIPGVKAYVPSGIN 183
Query: 281 VYSILQHDTLVMSRDAVNKI 300
+Y I+ +D L ++++AV KI
Sbjct: 184 IYDIVNYDKLFLTQEAVKKI 203
>gi|429220609|ref|YP_007182253.1| 50S ribosomal protein L4 [Deinococcus peraridilitoris DSM 19664]
gi|429131472|gb|AFZ68487.1| 50S ribosomal protein L4, bacterial/organelle [Deinococcus
peraridilitoris DSM 19664]
Length = 201
Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 83/179 (46%), Positives = 109/179 (60%), Gaps = 7/179 (3%)
Query: 121 FDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
D+P + ++H VV WQLAKR+QG+ STKT +EVS TGKK + QKGTG ARHG P
Sbjct: 17 LDLPDVNPGLLHEVVTWQLAKRRQGSASTKTRAEVSRTGKKMYSQKGTGNARHGNRAAPI 76
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIV-N 238
F GG GPKPR++ L KKVR+LGL +ALS RA GKLL + E+ F+
Sbjct: 77 FVGGGVAFGPKPRNYGFTLPKKVRQLGLAMALSDRAQSGKLLAVDGFELDGRTKSFLSWA 136
Query: 239 YYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAV 297
N ++ +++V L E + +NL +V LP GLNVY IL+HD L++ DAV
Sbjct: 137 AQNGVDGSERVFLV---TDDENARRGARNLPWVTALPVAGLNVYDILRHDRLII--DAV 190
>gi|219666491|ref|YP_002456926.1| 50S ribosomal protein L4 [Desulfitobacterium hafniense DCB-2]
gi|254803731|sp|B8G1W7.1|RL4_DESHD RecName: Full=50S ribosomal protein L4
gi|219536751|gb|ACL18490.1| ribosomal protein L4/L1e [Desulfitobacterium hafniense DCB-2]
Length = 207
Score = 146 bits (369), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 79/199 (39%), Positives = 115/199 (57%), Gaps = 1/199 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + L VF + ++H+ V QLA +++GTHST EV G G+K
Sbjct: 4 VQVVNMQGSPVGELELDEYVFGIEPNTHVMHQAVVGQLASQRRGTHSTLLRGEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R P +RGG + GPKPR + L KKVRRL L+ ALS++ E KL
Sbjct: 64 PWRQKGTGRARAGSIRSPLWRGGAVLFGPKPRKYGFSLPKKVRRLALRSALSSKVNEQKL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V EDL + KT+ +V + KK L+ + E + + +N+ + G+N
Sbjct: 124 IVLEDLSLNEAKTREMVKVLQALNVGKKALIVTDEFM-ETIDRSARNIAGIKTTAVEGMN 182
Query: 281 VYSILQHDTLVMSRDAVNK 299
+Y +L D +VM++ AV K
Sbjct: 183 IYDLLNSDVIVMTKAAVTK 201
>gi|302382619|ref|YP_003818442.1| 50S ribosomal protein L4/L1e [Brevundimonas subvibrioides ATCC
15264]
gi|302193247|gb|ADL00819.1| ribosomal protein L4/L1e [Brevundimonas subvibrioides ATCC 15264]
Length = 222
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 120/197 (60%), Gaps = 2/197 (1%)
Query: 105 NFFNEDKGFMVLAGDVFDV-PIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWR 163
N + G + L+ +F + IR D++ R V WQLAKR+ GTH +T +E S TGKK ++
Sbjct: 7 NLDGKAAGDVELSDVIFGITDIRGDLLARYVNWQLAKRRAGTHKVQTRNENSRTGKKMYK 66
Query: 164 QKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVF 223
QKGTG ARHG+ R PQF GG+ GP R H L KKVR L L+ ALS++ G L+V
Sbjct: 67 QKGTGGARHGSRRAPQFVGGSRAFGPIVRDHGFDLPKKVRALALRHALSSKVKTGDLVVV 126
Query: 224 EDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYS 283
+ L V KT + + ++ T+ +++ G + LA++N+ ++VLP+ GLNVY
Sbjct: 127 DALTVKEAKTSALRETFGKLGWTRTLIIA-GPEVDANFALASRNIPQIHVLPNAGLNVYD 185
Query: 284 ILQHDTLVMSRDAVNKI 300
IL+ D LV+++ AV I
Sbjct: 186 ILRADKLVLTKSAVEAI 202
>gi|302669962|ref|YP_003829922.1| 50S ribosomal protein L4 [Butyrivibrio proteoclasticus B316]
gi|302394435|gb|ADL33340.1| ribosomal protein L4 RplD [Butyrivibrio proteoclasticus B316]
Length = 207
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 119/202 (58%), Gaps = 5/202 (2%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G + L+ +F V + + ++H V QLA +QGT KT SEVSG G+K
Sbjct: 4 VSVYNMEGKEVGKIDLSDAIFGVEVNEHLVHMAVLQQLADNRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G++R PQ++GG + P PR ++ K+NKK +R LK AL+ + +
Sbjct: 64 PWRQKGTGHARQGSIRAPQWKGGGVVFAPVPRDYSFKMNKKEKRAALKSALTDKVQNNNI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKK--VLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
+V ++L+ KTK N + T+K V+L D + + L+ +NL N +
Sbjct: 124 VVVDELKFDEIKTKRFAEVMNNLNATRKALVVLADN---DQNVVLSARNLAEANTTLTNT 180
Query: 279 LNVYSILQHDTLVMSRDAVNKI 300
LNVY I+ TLV+++DAV KI
Sbjct: 181 LNVYDIVNARTLVLTKDAVAKI 202
>gi|351700425|gb|EHB03344.1| 39S ribosomal protein L4, mitochondrial [Heterocephalus glaber]
Length = 296
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/213 (38%), Positives = 124/213 (58%), Gaps = 7/213 (3%)
Query: 97 QDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSG 156
Q V + + E G L DVF R D++H+V WQ ++ TKT +EV G
Sbjct: 65 QAWVESLRGYEQERVGLAELHPDVFATAPRVDVLHQVAIWQRNFKRISYAKTKTRAEVRG 124
Query: 157 TGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARA 215
G+KPW+QKGTGRARHG++R P +RGG HGP+ P+S+ L KVR LGLK+AL+ +
Sbjct: 125 GGRKPWQQKGTGRARHGSIRSPIWRGGGVAHGPRGPKSYYYMLPMKVRVLGLKVALTVKL 184
Query: 216 AEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKL----ATQNLHYV 271
A+ L V + LE+P+ ++++ VLL D HE++ AT L
Sbjct: 185 AQDDLHVVDSLELPTADPQYLMELARHRHWGDSVLLVD--LTHEEMPQNVVEATSRLKTF 242
Query: 272 NVLPSVGLNVYSILQHDTLVMSRDAVNKIVDRM 304
N++P+VGLNV+S+L+H TLV++ V + +++
Sbjct: 243 NLIPAVGLNVHSMLKHHTLVLTLPTVTFLEEKL 275
>gi|355703125|gb|EHH29616.1| hypothetical protein EGK_10089 [Macaca mulatta]
Length = 296
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/213 (39%), Positives = 121/213 (56%), Gaps = 7/213 (3%)
Query: 97 QDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSG 156
Q V + F E G L DVF R DI+H+V WQ ++ TKT +EV G
Sbjct: 65 QAWVESLRGFEQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEVRG 124
Query: 157 TGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARA 215
G+KPW QKGTGRARHG++R P +RGG HGP+ P S+ L KVR LGLK+ALS +
Sbjct: 125 GGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALSIKL 184
Query: 216 AEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKL----ATQNLHYV 271
A+ L + + LE+P+ +++ VLL D +E++ AT L
Sbjct: 185 AQDDLHIMDSLELPTRDPQYLTELARYRRWGDSVLLVD--LTYEEMPQSIVEATSRLKTF 242
Query: 272 NVLPSVGLNVYSILQHDTLVMSRDAVNKIVDRM 304
N++P+VGLNV+S+L+H TLV++ + + D++
Sbjct: 243 NLIPAVGLNVHSMLKHQTLVLTLPTIAFLEDKL 275
>gi|251799641|ref|YP_003014372.1| 50S ribosomal protein L4 [Paenibacillus sp. JDR-2]
gi|247547267|gb|ACT04286.1| ribosomal protein L4/L1e [Paenibacillus sp. JDR-2]
Length = 207
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 118/200 (59%), Gaps = 1/200 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N + G + LA VF + ++H V Q A + GTH TK SEV G G+K
Sbjct: 4 VTVFNVSGSEVGEIELADSVFGIEPNSHVLHSAVLLQQAAERAGTHKTKGRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G++R PQ+ GG T+ GP PRS+ KL KKVRRL +K ALS++ ++
Sbjct: 64 PWKQKGTGRARQGSIRSPQWVGGGTVFGPTPRSYGFKLPKKVRRLAIKSALSSKVIANEI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + L + KTK N ++ +K L+ + + L+ +N+ V + + G+N
Sbjct: 124 VVLDQLTFAAPKTKEFAAILNNLKADRKALVVL-PAYDDNVALSARNIPGVKFVAADGIN 182
Query: 281 VYSILQHDTLVMSRDAVNKI 300
V +L HD L+++++AV K+
Sbjct: 183 VLDVLVHDKLIITKEAVEKV 202
>gi|403385667|ref|ZP_10927724.1| 50S ribosomal protein L4 [Kurthia sp. JC30]
Length = 207
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 115/189 (60%), Gaps = 1/189 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +F + + ++ + Q A +QGTH TK SEVSG G+KPWRQKGTGRAR
Sbjct: 15 GEIELNDAIFGIEPNESVLFDAIVAQRASLRQGTHKTKGRSEVSGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+RGG + GP PRS+A KL KKVRRL LK ALS + AE +V + L + +
Sbjct: 75 QGSIRSPQWRGGGIVFGPTPRSYAYKLPKKVRRLALKSALSTKVAETNFVVVDALTLNAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KTK V + K L+ ++E + L+ +N+ V VL G+N+ ++ + +V
Sbjct: 135 KTKDFVKVLADLSVESKSLIVTAD-VNENVALSARNIPGVTVLTVEGINILDLVSANKVV 193
Query: 292 MSRDAVNKI 300
+++DAV KI
Sbjct: 194 ITKDAVAKI 202
>gi|379707020|ref|YP_005262225.1| 50S ribosomal protein L4 [Nocardia cyriacigeorgica GUH-2]
gi|374844519|emb|CCF61581.1| 50S ribosomal protein L4 [Nocardia cyriacigeorgica GUH-2]
Length = 226
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 122/207 (58%), Gaps = 6/207 (2%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+L +PV + G + L ++FD ++H+VV QLA +QGTHSTKT EV G
Sbjct: 11 NLTLPVKELGGKTNGTVELPAEIFDATANIALMHQVVVAQLAAARQGTHSTKTRGEVRGG 70
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
GKKP+RQKGTGRAR G+ R PQF GG T+HGPKPR ++ + KK+ R L+ ALS RA
Sbjct: 71 GKKPYRQKGTGRARQGSTRAPQFAGGGTVHGPKPRDYSQRTPKKMIRAALRGALSDRARN 130
Query: 218 GKLLVFEDL---EVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
++ V +L + PS TK + +++ + KK L+ G K + QNL +V+ +
Sbjct: 131 ERIHVISELVAGQTPS--TKTAKTFLSELSDRKKFLVVLGREDIAAWK-SVQNLEFVHPI 187
Query: 275 PSVGLNVYSILQHDTLVMSRDAVNKIV 301
LN Y +L+ D +V S +A+N V
Sbjct: 188 APDQLNTYDVLESDEVVFSVEALNAFV 214
>gi|295109478|emb|CBL23431.1| LSU ribosomal protein L4P [Ruminococcus obeum A2-162]
Length = 206
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 117/200 (58%), Gaps = 2/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N + G M L VF V I + ++H V QLA +QGT KT SEVSG G+K
Sbjct: 4 VTVYNMEGNEVGTMELNDAVFGVEINEHLVHLAVVRQLANNRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G++R PQ+ GG + P PR + +K+NKK RR LK AL+++ + KL
Sbjct: 64 PWRQKGTGHARQGSIRAPQWTGGGVVFAPVPRDYEVKMNKKERRAALKSALTSKVQDNKL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + L + KTK + ++ K +++ G + + L+ +N+ V +N
Sbjct: 124 VVVDSLALAEVKTKEMQKVLTNLKAEKALIVTAGD--DQNVVLSARNIADVQTATVNTIN 181
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY +++H T+V+++DAV I
Sbjct: 182 VYDVMKHSTVVVTKDAVASI 201
>gi|291290889|ref|NP_001167475.1| mitochondrial ribosomal protein L4 [Xenopus laevis]
gi|161611723|gb|AAI55897.1| Unknown (protein for MGC:181787) [Xenopus laevis]
Length = 298
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 77/199 (38%), Positives = 126/199 (63%), Gaps = 2/199 (1%)
Query: 108 NEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGT 167
++ G + L DVF VP R DI+H+V+ WQ ++ KT +EV G GKKP +QKG+
Sbjct: 79 DQQLGLVHLHPDVFTVPPRIDILHQVITWQRNFKRISYAKVKTRAEVRGGGKKPRQQKGS 138
Query: 168 GRARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL 226
GR+R G++R P +RGG HGP+ P S+ + K+R LGLKIAL+ + A+ L + + L
Sbjct: 139 GRSRQGSIRSPLWRGGGVAHGPRGPTSYYYMMPMKLRVLGLKIALTTKLAQDDLHIIDSL 198
Query: 227 EVPSHKTKFIVNYYNQMENTKKVLLCD-GGCIHEKLKLATQNLHYVNVLPSVGLNVYSIL 285
E+ + +++++ N + VL+ D + E + AT NL +NV+P+ GLNV+S+L
Sbjct: 199 EISTPDPQYLIDLVNHRQWGDSVLIVDVNENLPENIFNATINLKKINVIPATGLNVFSML 258
Query: 286 QHDTLVMSRDAVNKIVDRM 304
+HDT+V++ AV+ + +++
Sbjct: 259 KHDTVVLTVAAVDFLEEKL 277
>gi|357012814|ref|ZP_09077813.1| 50S ribosomal protein L4 [Paenibacillus elgii B69]
Length = 207
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 119/200 (59%), Gaps = 1/200 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + LA VF + +++ V Q A + GTH TK SEV G G+K
Sbjct: 4 VAVFNVSGAQVGEVELADSVFGIEPHVHVLNEAVLMQRASLRAGTHKTKGRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G++R PQ++GG + GP PRS+A KL KKVRRL +K ALS++ ++
Sbjct: 64 PWKQKGTGRARQGSIRSPQWKGGGIVFGPTPRSYAYKLPKKVRRLAIKSALSSKVKASEI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + L++ KTK N ++ +K L+ E + L+ +N+ V + + G+N
Sbjct: 124 IVLDQLQLAQPKTKEFAAILNNLKVDRKALVVT-AAYDENVALSARNIPGVKFVAAEGIN 182
Query: 281 VYSILQHDTLVMSRDAVNKI 300
V ++ +D L++++DAV K+
Sbjct: 183 VLDVMVYDKLIITKDAVQKV 202
>gi|433461753|ref|ZP_20419356.1| 50S ribosomal protein L4 [Halobacillus sp. BAB-2008]
gi|432189768|gb|ELK46845.1| 50S ribosomal protein L4 [Halobacillus sp. BAB-2008]
Length = 207
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 77/199 (38%), Positives = 117/199 (58%), Gaps = 1/199 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N + G + L VF + ++H V Q A +QGTH K SEVSG G+K
Sbjct: 4 VALLNQGGSNVGEIELNDAVFGIEPNTHVLHETVLMQRANLRQGTHKVKGRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+ GG T+ GP PRS++ + +KVRRL L+ A S++ E +
Sbjct: 64 PWRQKGTGRARQGSIRSPQWVGGGTVFGPTPRSYSYTMPRKVRRLALQSAYSSKVKEENI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V E L + + KTK +VN ++ +K L+ G E + L+ N+ V LP ++
Sbjct: 124 IVLESLSLEAPKTKEVVNMLKALDVNEKALIVTAGK-DENVTLSANNIPTVKSLPVEEVS 182
Query: 281 VYSILQHDTLVMSRDAVNK 299
V +L HD L+++++A K
Sbjct: 183 VLDLLTHDKLILTKEAAEK 201
>gi|224370690|ref|YP_002604854.1| 50S ribosomal protein L4 [Desulfobacterium autotrophicum HRM2]
gi|259491553|sp|C0Q9X2.1|RL4_DESAH RecName: Full=50S ribosomal protein L4
gi|223693407|gb|ACN16690.1| RplD [Desulfobacterium autotrophicum HRM2]
Length = 207
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/203 (39%), Positives = 123/203 (60%), Gaps = 2/203 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N E LA +VF +P++K ++H VVR QLA+R+ GT +K SEVSG+ +K
Sbjct: 4 VDVLNRSGEKVSEAFLADEVFSIPVKKSVLHDVVRMQLARRRSGTAKSKGRSEVSGSTRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
+RQKGTG AR G+++ P RGG + GP PRS+A + KKVR L LK+ALS++ A +L
Sbjct: 64 LYRQKGTGNARSGSVKSPLRRGGGVIFGPAPRSYAYAIPKKVRALALKMALSSKLAANEL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
V + + S KTK + + + +++ DG L L+ +N+ V V+ + GLN
Sbjct: 124 SVIDTFAMDSIKTKEFDSIIDHLGLKNTLIVIDGD--DRNLVLSARNIPDVKVIRTEGLN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDR 303
VY IL++D L++ A+ +I R
Sbjct: 182 VYDILKYDNLLLIESAIKEIEGR 204
>gi|154253178|ref|YP_001414002.1| 50S ribosomal protein L4 [Parvibaculum lavamentivorans DS-1]
gi|171769628|sp|A7HWR2.1|RL4_PARL1 RecName: Full=50S ribosomal protein L4
gi|154157128|gb|ABS64345.1| ribosomal protein L4/L1e [Parvibaculum lavamentivorans DS-1]
Length = 206
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/204 (44%), Positives = 125/204 (61%), Gaps = 1/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I VT + G + L VF + R DI+HR+V WQLAKRQ GTH TK SE++ TGKK
Sbjct: 3 IDVTTLEAKKAGSVDLTDGVFALEPRGDILHRMVAWQLAKRQAGTHKTKGRSEIALTGKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
+QKG+G ARHG + PQFRGG GP RSHA + KKVR L LK+ALSA+A L
Sbjct: 63 FVKQKGSGGARHGDRKAPQFRGGGKAFGPVVRSHAFDMPKKVRALALKLALSAKAKSDNL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
++ ++ ++ +TK + + ++ K VL+ DG + LA +NL V+VLP G+N
Sbjct: 123 VILDEAKLAEPRTKAAKDAFEKL-GLKSVLIIDGAELDANFALAARNLPNVDVLPVQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL+ + LV+++ AV + R
Sbjct: 182 VYDILRREKLVLTKAAVESLEARF 205
>gi|375360807|ref|YP_005128846.1| 50S ribosomal protein L4 BL4 [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|421733049|ref|ZP_16172164.1| 50S ribosomal protein L4 [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|451348493|ref|YP_007447124.1| 50S ribosomal protein L4 [Bacillus amyloliquefaciens IT-45]
gi|371566801|emb|CCF03651.1| 50S ribosomal protein L4 BL4 [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|407073090|gb|EKE46088.1| 50S ribosomal protein L4 [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|449852251|gb|AGF29243.1| 50S ribosomal protein L4 [Bacillus amyloliquefaciens IT-45]
Length = 207
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 121/203 (59%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N++ G + L VF + + ++ + Q A +QG+H K SEV G
Sbjct: 1 MPKVALYNQNGSTAGDIELNASVFGIEPNESVVFDAILMQRASLRQGSHKVKNRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ KL KKVRRL +K LS++ +
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAIKSVLSSKVND 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++V EDL + + KTK + + KK L+ +E + L+ +N+ V V+ +
Sbjct: 121 NNIIVLEDLTLDTVKTKEMAAVLKGLSVEKKALIVTADA-NEAVSLSARNIPGVTVVQAN 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
G+NV ++ H+ L++++ AV K+
Sbjct: 180 GINVLDVVNHEKLLITKAAVEKV 202
>gi|227509932|ref|ZP_03939981.1| 50S ribosomal protein L4 [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
gi|227190538|gb|EEI70605.1| 50S ribosomal protein L4 [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
Length = 207
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 79/190 (41%), Positives = 116/190 (61%), Gaps = 3/190 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L DVF + +++ V Q A R+QGTHS K S V G GKKPWRQKGTGRAR
Sbjct: 15 GTVSLNDDVFGIEPNNNVVFDAVVMQRASRRQGTHSVKNRSAVRGGGKKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+RGG + GP PRS+A L KKV RL LK LS + A+ KL+V + L +
Sbjct: 75 QGSIRSPQWRGGGIVFGPTPRSYAYHLPKKVSRLALKSVLSEKVADEKLVVVDSLVFETP 134
Query: 232 KTKFIVNYYNQME-NTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTL 290
KTK ++ +TK +++ + G +EK L+ NL V V+ + G+N + HD +
Sbjct: 135 KTKEFAALLEKLNVSTKTLIVLEDG--NEKASLSAHNLENVKVVSADGINTLDVADHDKV 192
Query: 291 VMSRDAVNKI 300
V+++ A++++
Sbjct: 193 VITKAALSQV 202
>gi|355755440|gb|EHH59187.1| hypothetical protein EGM_09241 [Macaca fascicularis]
Length = 296
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/213 (39%), Positives = 121/213 (56%), Gaps = 7/213 (3%)
Query: 97 QDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSG 156
Q V + F E G L DVF R DI+H+V WQ ++ TKT +EV G
Sbjct: 65 QAWVESLRGFEQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEVRG 124
Query: 157 TGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARA 215
G+KPW QKGTGRARHG++R P +RGG HGP+ P S+ L KVR LGLK+ALS +
Sbjct: 125 GGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALSIKL 184
Query: 216 AEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKL----ATQNLHYV 271
A+ L + + LE+P+ +++ VLL D +E++ AT L
Sbjct: 185 AQDDLHIMDSLELPTRDPQYLTELARYRRWGDSVLLVD--LTYEEMPQSIVEATSRLKTF 242
Query: 272 NVLPSVGLNVYSILQHDTLVMSRDAVNKIVDRM 304
N++P+VGLNV+S+L+H TLV++ + + D++
Sbjct: 243 NLIPAVGLNVHSMLKHQTLVLTLPTIAFLEDKL 275
>gi|154684635|ref|YP_001419796.1| 50S ribosomal protein L4 [Bacillus amyloliquefaciens FZB42]
gi|308172008|ref|YP_003918713.1| 50S ribosomal protein L4 [Bacillus amyloliquefaciens DSM 7]
gi|384157730|ref|YP_005539803.1| 50S ribosomal protein L4 [Bacillus amyloliquefaciens TA208]
gi|384263747|ref|YP_005419454.1| 50S ribosomal protein L4 [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|385267144|ref|ZP_10045231.1| 50S ribosomal protein L4 [Bacillus sp. 5B6]
gi|429503651|ref|YP_007184835.1| 50S ribosomal protein L4 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|452854179|ref|YP_007495862.1| ribosomal protein L4 [Bacillus amyloliquefaciens subsp. plantarum
UCMB5036]
gi|166234633|sp|A7Z0N9.1|RL4_BACA2 RecName: Full=50S ribosomal protein L4
gi|154350486|gb|ABS72565.1| RplD [Bacillus amyloliquefaciens FZB42]
gi|307604872|emb|CBI41243.1| ribosomal protein L4 [Bacillus amyloliquefaciens DSM 7]
gi|328551818|gb|AEB22310.1| 50S ribosomal protein L4 [Bacillus amyloliquefaciens TA208]
gi|380497100|emb|CCG48138.1| 50S ribosomal protein L4 [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|385151640|gb|EIF15577.1| 50S ribosomal protein L4 [Bacillus sp. 5B6]
gi|429485241|gb|AFZ89165.1| 50S ribosomal protein L4 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|452078439|emb|CCP20189.1| ribosomal protein L4 [Bacillus amyloliquefaciens subsp. plantarum
UCMB5036]
Length = 207
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 121/203 (59%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N++ G + L VF + + ++ + Q A +QG+H K SEV G
Sbjct: 1 MPKVALYNQNGSTAGDIELNASVFGIEPNESVVFDAILMQRASLRQGSHKVKNRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ KL KKVRRL +K LS++ +
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAIKSVLSSKVND 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++V EDL + + KTK + + KK L+ +E + L+ +N+ V V+ +
Sbjct: 121 NNIIVLEDLTLDTVKTKEMAAILKGLSVEKKALIVTADA-NEAVSLSARNIPGVTVVQAN 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
G+NV ++ H+ L++++ AV K+
Sbjct: 180 GINVLDVVNHEKLLITKAAVEKV 202
>gi|114764143|ref|ZP_01443381.1| 50S ribosomal protein L4, partial [Pelagibaca bermudensis HTCC2601]
gi|114543295|gb|EAU46311.1| 50S ribosomal protein L4 [Roseovarius sp. HTCC2601]
Length = 177
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 80/166 (48%), Positives = 106/166 (63%), Gaps = 2/166 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++FD+ R DI+HRVVRWQ K Q GTH KT SEVS + KK +RQKGTG AR
Sbjct: 14 GEVELTDEIFDLEPRADILHRVVRWQRNKAQAGTHKVKTRSEVSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG+ + P FR G GP PRSHA L KKVR+LGLK+ALSA+A G L++ E+ +
Sbjct: 74 HGSRKAPIFRKGGIYKGPTPRSHAHDLPKKVRQLGLKLALSAKAKAGSLVIIENADADG- 132
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
KTK + + + K+ L+ DG ++E A N+ ++VLPSV
Sbjct: 133 KTKTLASQVKNL-GWKRALVIDGAEVNENFARAAANIDGLDVLPSV 177
>gi|395512585|ref|XP_003760516.1| PREDICTED: 39S ribosomal protein L4, mitochondrial [Sarcophilus
harrisii]
Length = 297
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 94/259 (36%), Positives = 136/259 (52%), Gaps = 8/259 (3%)
Query: 44 GDNLFPLKSGLSFLASRKFST---TILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLV 100
G +L P + LS L + T P LL++ L + G Q V
Sbjct: 14 GRSLIPARRALSALTGGDLEVPEHALTTASPPPVGVP---LLRRCELPVPVHRGPVQAWV 70
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + G L DVF V R DI+H V WQ ++ TKT +EV G G+K
Sbjct: 71 ESLRGYEETRLGLADLHPDVFSVAPRLDILHEVAIWQKNFKRISYAKTKTRAEVRGGGRK 130
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGK 219
PWRQKG+GRARHG++R P +RGG HGP+ P S+ L KVR LGLK+AL+ + +
Sbjct: 131 PWRQKGSGRARHGSIRSPIWRGGGIAHGPRGPTSYYYMLPMKVRVLGLKVALTVKLMQDD 190
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCD-GGCIHEKLKLATQNLHYVNVLPSVG 278
L V + LE+P+ K++ + VLL D + + + A NL +N++P+VG
Sbjct: 191 LHVVDSLELPTSDPKYLSDLVRHRCWGDSVLLVDVNEEMPQNIVSAVSNLKTINLIPAVG 250
Query: 279 LNVYSILQHDTLVMSRDAV 297
LNV+S+L+H TLV++ + V
Sbjct: 251 LNVHSMLKHQTLVLTLNTV 269
>gi|451947650|ref|YP_007468245.1| 50S ribosomal protein L4, bacterial/organelle [Desulfocapsa
sulfexigens DSM 10523]
gi|451906998|gb|AGF78592.1| 50S ribosomal protein L4, bacterial/organelle [Desulfocapsa
sulfexigens DSM 10523]
Length = 207
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/204 (40%), Positives = 122/204 (59%), Gaps = 2/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N NE G + L DVFD+ +++ ++H VVR Q A ++ G STKT EV G G K
Sbjct: 4 VDIVNTSNEKVGEIELNADVFDLTVKEHLLHDVVRMQRAAKRAGNASTKTRREVRGGGAK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR GT P +RGG GPKPR ++ KLN+KV++ L +A+SAR EG L
Sbjct: 64 PWKQKGTGRARAGTRNSPIWRGGGVTFGPKPRDYSFKLNRKVKQQALAMAMSARLQEGNL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V +D + + KTK V + +++ +G +E + + +N + VLP GLN
Sbjct: 124 VVIDDFIMDAIKTKNFVGIMKGFDFENCLVVTEGN--YENVNKSARNANGFKVLPVEGLN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL H L++ + AV + R+
Sbjct: 182 VYDILLHKKLMLLKPAVESLEKRL 205
>gi|340356780|ref|ZP_08679421.1| 50S ribosomal protein L4 [Sporosarcina newyorkensis 2681]
gi|339620118|gb|EGQ24689.1| 50S ribosomal protein L4 [Sporosarcina newyorkensis 2681]
Length = 207
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/189 (40%), Positives = 116/189 (61%), Gaps = 1/189 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +F + + +++ + Q A +QG H KT +EV+G G+KPWRQKGTGRAR
Sbjct: 15 GDIELNDAIFGIEPNEAVLYEAIVQQQASLRQGNHKVKTRAEVAGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+RGG + GP PRS++ K+ KKVRRL L ALS + +L+V ++L +
Sbjct: 75 QGSIRSPQWRGGGIVFGPTPRSYSYKMPKKVRRLALLSALSTKVRAEELIVVDNLAFDAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KTK V + TKK L + E + L+ +N+ V+V+ + G+NV ++ HD LV
Sbjct: 135 KTKGFVKVLEDLSITKKALFVTAD-LEETVALSARNIPGVSVVTANGINVLDLVGHDQLV 193
Query: 292 MSRDAVNKI 300
M++ AV K+
Sbjct: 194 MTKAAVEKV 202
>gi|226323011|ref|ZP_03798529.1| hypothetical protein COPCOM_00783 [Coprococcus comes ATCC 27758]
gi|225208578|gb|EEG90932.1| 50S ribosomal protein L4 [Coprococcus comes ATCC 27758]
Length = 206
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 120/200 (60%), Gaps = 2/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G + L VF V + + ++H V QLA ++QGT KT SEVSG G+K
Sbjct: 4 VSVYNIEGKEVGTIDLNDAVFGVEVNEHLVHMAVVSQLANKRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ GG + P PR ++ KLNKK RR LK AL++R E K
Sbjct: 64 PWRQKGTGHARQGSTRAPQWTGGGVVFAPTPRDYSFKLNKKERRAALKSALTSRVEEKKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V +++ KTK + N + +K +++ + G ++ +L+ +N+ V + +N
Sbjct: 124 IVVDEINFDEIKTKKFQDVLNNLSVSKALVVLEDG--NKNAELSARNIADVKTAKTNTIN 181
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY IL+++T++ ++ AV I
Sbjct: 182 VYDILKYNTVIATKAAVQAI 201
>gi|167759861|ref|ZP_02431988.1| hypothetical protein CLOSCI_02224 [Clostridium scindens ATCC 35704]
gi|336421094|ref|ZP_08601254.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 5_1_57FAA]
gi|167662480|gb|EDS06610.1| 50S ribosomal protein L4 [Clostridium scindens ATCC 35704]
gi|336002453|gb|EGN32562.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 5_1_57FAA]
Length = 206
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 122/200 (61%), Gaps = 2/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G M L+ VF V I + ++H V QLA ++QGT KT SEVSG G+K
Sbjct: 4 VSVYNIEGKEVGTMDLSDAVFGVEINEHLLHMAVVNQLANKRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ GG + P PR ++ K+NKK +R LK AL+A+ E K
Sbjct: 64 PWRQKGTGHARQGSTRAPQWTGGGVVFAPVPRDYSFKMNKKEKRAALKSALTAKVEEKKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V +++++ KTK N ++ +K +++ + G + +++ +N+ + S +N
Sbjct: 124 IVVDEIKLDEIKTKNFANILKNLDVSKALVVLEDGNTN--AEVSARNIADIKTARSNTIN 181
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY IL+++T++ ++ AV I
Sbjct: 182 VYDILKYNTVIATKAAVANI 201
>gi|134298094|ref|YP_001111590.1| 50S ribosomal protein L4 [Desulfotomaculum reducens MI-1]
gi|172044220|sp|A4J112.1|RL4_DESRM RecName: Full=50S ribosomal protein L4
gi|134050794|gb|ABO48765.1| LSU ribosomal protein L4P [Desulfotomaculum reducens MI-1]
Length = 206
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 124/200 (62%), Gaps = 2/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N E G + L +VF + + ++H V QLA ++QGTH TKT +EV G G+K
Sbjct: 4 VALYNINGEQVGEVELKDEVFGIEPHEHVMHEAVNMQLANQRQGTHDTKTRAEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G+ R P +R G + GP PR +AI L KKVRRL LK ALS++ + +
Sbjct: 64 PWRQKGTGRARAGSSRSPIWRKGGIVFGPHPRDYAISLPKKVRRLALKSALSSKVLDQNI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + L + + KTK +V ++ K +++ ++ ++ + +N+ V L + G+N
Sbjct: 124 IVLDSLTMDAPKTKDMVRILGNLKADKALVVTATRDLN--VEKSARNIEGVKPLKADGVN 181
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY +L++ LV+++DAV KI
Sbjct: 182 VYDLLKYTKLVITKDAVAKI 201
>gi|170759420|ref|YP_001788820.1| 50S ribosomal protein L4 [Clostridium botulinum A3 str. Loch Maree]
gi|226730645|sp|B1KSM4.1|RL4_CLOBM RecName: Full=50S ribosomal protein L4
gi|169406409|gb|ACA54820.1| 50S ribosomal protein L4 [Clostridium botulinum A3 str. Loch Maree]
Length = 206
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 125/199 (62%), Gaps = 5/199 (2%)
Query: 105 NFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ FN E G + LA VF V + +H+VV+ LA ++QGT S KT +EVSG G KP
Sbjct: 5 DLFNQNGEKVGDLQLADSVFGVEVNTYAMHQVVKALLANKRQGTQSAKTRAEVSGGGIKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
WRQKGTGRAR G++R PQ+ G + PKPR + + + K ++++ +K AL+++ E ++
Sbjct: 65 WRQKGTGRARQGSIRAPQWIHGGIVFAPKPRDYRMSIPKSMKKVAIKSALTSKVNENLMV 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNV 281
V +++++ + KTK +V N N KK L+ E + + +N+ V ++P +NV
Sbjct: 125 VVDEIKLETPKTKEVVKMLNAF-NAKKTLIITNNA-EENVYKSARNIEGVQIIPVNNINV 182
Query: 282 YSILQHDTLVMSRDAVNKI 300
Y +L++D +++++DAV+KI
Sbjct: 183 YDVLKYDKVIITKDAVSKI 201
>gi|406666921|ref|ZP_11074684.1| 50S ribosomal protein L4 [Bacillus isronensis B3W22]
gi|405385204|gb|EKB44640.1| 50S ribosomal protein L4 [Bacillus isronensis B3W22]
Length = 207
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 114/189 (60%), Gaps = 1/189 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +F + + ++ V Q A +QG H K S V+G G+KPWRQKGTGRAR
Sbjct: 15 GEIELNDAIFGIEPNEAVLFDAVVAQRASLRQGNHKVKNRSAVAGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+RGG + GP PRS++ KL KKVRRL +K ALSA+ E L+V + L +
Sbjct: 75 QGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAIKSALSAKVLEQNLVVLDALSFDAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KTK + +E +KK L ++E L+ +N+ V VL + G+NV +L HD +V
Sbjct: 135 KTKDFKSVLAALEISKKALFVT-AEVNENAILSARNIPGVTVLTAEGINVLDLLGHDKVV 193
Query: 292 MSRDAVNKI 300
++DAV K+
Sbjct: 194 FTQDAVKKV 202
>gi|160894755|ref|ZP_02075530.1| hypothetical protein CLOL250_02306 [Clostridium sp. L2-50]
gi|156863689|gb|EDO57120.1| 50S ribosomal protein L4 [Clostridium sp. L2-50]
Length = 206
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 114/185 (61%), Gaps = 2/185 (1%)
Query: 116 LAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTL 175
L VF V I + ++H V Q A +QGT S KT SEVSG G+KPWRQKGTG AR G+
Sbjct: 19 LNDSVFGVEINEHLMHLAVVGQQANSRQGTQSAKTRSEVSGGGRKPWRQKGTGHARQGST 78
Query: 176 RGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKF 235
R PQ+ GG + PKPR +++K+NKK ++L +K ALSA+ AE KL+V + +E+ KT
Sbjct: 79 RSPQWTGGGVVFAPKPRDYSVKMNKKEKQLAMKSALSAKLAEDKLVVVDKIELEEVKTSV 138
Query: 236 IVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRD 295
++ K +++ ++K+ L+ N+ V + L+VY IL++D LV+++D
Sbjct: 139 FAKILANLKAPKSLVVTKDK--NDKVVLSANNIPTVKTTATNSLSVYDILKYDKLVLTKD 196
Query: 296 AVNKI 300
AV I
Sbjct: 197 AVAAI 201
>gi|452994820|emb|CCQ93484.1| ribosomal protein L4 [Clostridium ultunense Esp]
Length = 207
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 121/201 (60%), Gaps = 3/201 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N E G + L DVF + + + +++ VV+ QLA +QGT S KT +EV G G+K
Sbjct: 4 VNVYNILGEQVGEIELNEDVFGIEVNQHVLYEVVKNQLANSRQGTQSVKTRAEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R P + GG PKPR + ++ KKV+RL +K ALS++ ++
Sbjct: 64 PWRQKGTGRARQGSIRAPHWVGGGVAFAPKPRDYGYRVPKKVKRLAMKSALSSKVLNNEI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC-DGGCIHEKLKLATQNLHYVNVLPSVGL 279
+V E+L + KTK + ++ +KK L+ D I+ + + +N+ V L
Sbjct: 124 IVLEELNLEEPKTKEMAKILENIKASKKALIVMDKKNIN--VIKSARNIPNVETTFVNTL 181
Query: 280 NVYSILQHDTLVMSRDAVNKI 300
NVY IL+ D+ ++++DAV K+
Sbjct: 182 NVYDILKFDSFIITKDAVRKV 202
>gi|227512865|ref|ZP_03942914.1| 50S ribosomal protein L4 [Lactobacillus buchneri ATCC 11577]
gi|227522993|ref|ZP_03953042.1| 50S ribosomal protein L4 [Lactobacillus hilgardii ATCC 8290]
gi|227083865|gb|EEI19177.1| 50S ribosomal protein L4 [Lactobacillus buchneri ATCC 11577]
gi|227089811|gb|EEI25123.1| 50S ribosomal protein L4 [Lactobacillus hilgardii ATCC 8290]
Length = 207
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/190 (41%), Positives = 116/190 (61%), Gaps = 3/190 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L D+F + +++ V Q A R+QGTHS K S V G GKKPWRQKGTGRAR
Sbjct: 15 GTVSLNDDIFGIEPNNNVVFDAVVMQRASRRQGTHSVKNRSAVRGGGKKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+RGG + GP PRS+A L KKV RL LK LS + A+ KL+V + L +
Sbjct: 75 QGSIRSPQWRGGGIVFGPTPRSYAYHLPKKVSRLALKSVLSEKVADEKLVVVDSLVFETP 134
Query: 232 KTKFIVNYYNQME-NTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTL 290
KTK ++ +TK +++ + G +EK L+ NL V V+ + G+N + HD +
Sbjct: 135 KTKEFAALLEKLNVSTKTLIVLEDG--NEKASLSAHNLENVKVVSADGINTLDVADHDKV 192
Query: 291 VMSRDAVNKI 300
V+++ A++++
Sbjct: 193 VITKAALSQV 202
>gi|120402317|ref|YP_952146.1| 50S ribosomal protein L4 [Mycobacterium vanbaalenii PYR-1]
gi|119955135|gb|ABM12140.1| LSU ribosomal protein L4P [Mycobacterium vanbaalenii PYR-1]
Length = 219
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/206 (40%), Positives = 124/206 (60%), Gaps = 2/206 (0%)
Query: 97 QDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSG 156
+D IPV + G + L ++FDV ++H+VV QLA ++QGTHSTKT EVSG
Sbjct: 4 EDRKIPVRTPAGKTDGSIELPAELFDVEPNIALMHQVVNAQLAAKRQGTHSTKTRGEVSG 63
Query: 157 TGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAA 216
GKKP+RQKGTGRAR G+ R PQF GG +HGPKPR ++ + KK+ R L+ ALS RA
Sbjct: 64 GGKKPYRQKGTGRARQGSTRAPQFTGGGIVHGPKPRDYSERTPKKMIRAALRGALSDRAR 123
Query: 217 EGKL-LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++ + E +E + TK ++ + + ++VL+ G E L+ +NL V+V+
Sbjct: 124 NDRIHAITEIVEGQTPSTKSAKSFLATLTDRRQVLVVIGRA-DEASALSVRNLPGVHVIS 182
Query: 276 SVGLNVYSILQHDTLVMSRDAVNKIV 301
LN Y +L+ D +V S +A+N +
Sbjct: 183 PDQLNTYDVLKADDVVFSVEALNAYI 208
>gi|299541933|ref|ZP_07052256.1| 50S ribosomal protein L4 [Lysinibacillus fusiformis ZC1]
gi|424739372|ref|ZP_18167791.1| 50S ribosomal protein L4 [Lysinibacillus fusiformis ZB2]
gi|298725671|gb|EFI66312.1| 50S ribosomal protein L4 [Lysinibacillus fusiformis ZC1]
gi|422946769|gb|EKU41175.1| 50S ribosomal protein L4 [Lysinibacillus fusiformis ZB2]
Length = 207
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 111/189 (58%), Gaps = 1/189 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +F + + ++ V Q A +QG H K SEV+G G+KPWRQKGTGRAR
Sbjct: 15 GEIELNDAIFGIEPNEAVLFDAVVAQRASLRQGNHKVKNRSEVAGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+RGG + GP PRS++ KL KKVRRL LK ALSA+ E LV + L + +
Sbjct: 75 QGSIRSPQWRGGGIVFGPTPRSYSYKLPKKVRRLALKSALSAKVVEQNFLVLDALTLAAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KTK + KK L + E + L+ +N+ V VL + G+NV +L HD +V
Sbjct: 135 KTKEFTKILKDLSLEKKSLFVTAD-LDENVALSARNIPGVTVLTANGINVLDLLGHDKVV 193
Query: 292 MSRDAVNKI 300
++ AV K+
Sbjct: 194 FTKSAVEKV 202
>gi|394994788|ref|ZP_10387495.1| 50S ribosomal protein L4 [Bacillus sp. 916]
gi|393804355|gb|EJD65767.1| 50S ribosomal protein L4 [Bacillus sp. 916]
Length = 207
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 121/203 (59%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N++ G + L VF + + ++ + Q A +QG+H K SEV G
Sbjct: 1 MPKVALYNQNGSTAGDIELNASVFGIEPNESVVFDAILMQRASLRQGSHKVKNRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ KL KKVRRL +K LS++ +
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAIKSVLSSKVND 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++V EDL + + KTK + + KK L+ +E + L+ +N+ V V+ +
Sbjct: 121 NNIIVLEDLTLDTVKTKEMAVILKGLSVEKKALIVTADA-NEAVSLSARNIPGVTVVQAN 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
G+NV ++ H+ L++++ AV K+
Sbjct: 180 GINVLDVVNHEKLLITKAAVEKV 202
>gi|300814627|ref|ZP_07094878.1| 50S ribosomal protein L4 [Peptoniphilus sp. oral taxon 836 str.
F0141]
gi|300511246|gb|EFK38495.1| 50S ribosomal protein L4 [Peptoniphilus sp. oral taxon 836 str.
F0141]
Length = 207
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/180 (40%), Positives = 118/180 (65%), Gaps = 1/180 (0%)
Query: 119 DVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGP 178
++F+ + + +++ VV+ LA R+QGTHS KT SEV G G+KPWRQKGTGRAR G++R P
Sbjct: 22 NIFNCDVNEHVVYLVVKNILANRRQGTHSAKTRSEVRGGGRKPWRQKGTGRARQGSIRSP 81
Query: 179 QFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVN 238
QFRGG + KPR ++ KKVRRL LK L+++ + +++V + LE+ KTK +VN
Sbjct: 82 QFRGGGVVFAKKPRDYSYTTPKKVRRLALKSVLTSKLQDSEIIVLDKLELNEIKTKTVVN 141
Query: 239 YYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVN 298
++ KK L+ +E + +++N+ V +NVY +L++++LV+++DA++
Sbjct: 142 ILKDIKADKKALIVINDK-NENIIRSSRNIEGVKTEFVKNINVYDLLKYNSLVITKDALD 200
>gi|197294630|ref|YP_001799171.1| 50S ribosomal protein L4 [Candidatus Phytoplasma australiense]
gi|226730703|sp|B1VAE7.1|RL4_PHYAS RecName: Full=50S ribosomal protein L4
gi|171853957|emb|CAM11920.1| 50S ribosomal protein L4 [Candidatus Phytoplasma australiense]
Length = 207
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 75/182 (41%), Positives = 115/182 (63%), Gaps = 1/182 (0%)
Query: 116 LAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTL 175
L +VFD+ + ++ V+ Q A +QGTH+TKT + VSG GKKPWRQKGTGRARHG++
Sbjct: 19 LKSNVFDIQPHQQALYDVINAQRAAMRQGTHATKTRAFVSGGGKKPWRQKGTGRARHGSI 78
Query: 176 RGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKF 235
R P +RGG + GP PR++++K+N+KV L LK ALS+ + +L++ +D + +HK+K
Sbjct: 79 RSPLWRGGGVVFGPSPRNYSVKVNQKVSHLALKSALSSHFRQNQLILVDDFNLDTHKSKD 138
Query: 236 IVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRD 295
++ T K L+ + L LA++NL YV + + +VY IL L+++ D
Sbjct: 139 FQKTLQKLNVTSKALIIVTNS-NRNLTLASRNLPYVTLETAAHASVYQILNCKNLILTLD 197
Query: 296 AV 297
AV
Sbjct: 198 AV 199
>gi|392373624|ref|YP_003205457.1| 50S ribosomal protein L4 [Candidatus Methylomirabilis oxyfera]
gi|258591317|emb|CBE67616.1| 50S ribosomal subunit protein L4 [Candidatus Methylomirabilis
oxyfera]
Length = 211
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 112/173 (64%), Gaps = 1/173 (0%)
Query: 129 IIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHG 188
++H VVR QLA R+QGT ST+ SEV G GKKPW+QKGTGRAR GT R P +RGG T+ G
Sbjct: 33 LMHDVVRMQLANRRQGTASTRRRSEVRGGGKKPWKQKGTGRARSGTRRSPLWRGGGTVFG 92
Query: 189 PKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQME-NTK 247
P+PRS+A ++ ++VR L+ ALS + G+ +V + L + TK ++ +
Sbjct: 93 PQPRSYAYEIPRQVRASALRTALSEKVRAGQFVVVDGLSLAEPSTKAFKALLTRLGVQGR 152
Query: 248 KVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNKI 300
+ + D + + ++ +NL V ++P+ GLNVY IL+HDTL+M++ AV+ +
Sbjct: 153 ALFVTDQVHQDDAVSMSCRNLPDVTLVPTAGLNVYDILRHDTLIMTKGAVSAV 205
>gi|194759834|ref|XP_001962152.1| GF15323 [Drosophila ananassae]
gi|190615849|gb|EDV31373.1| GF15323 [Drosophila ananassae]
Length = 296
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 115/201 (57%), Gaps = 2/201 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L DVF R DII V WQ R TKT +EV G G+KPW QKG GRAR
Sbjct: 81 GLIELHPDVFAAQPRVDIIQENVEWQRKYRYVSFAQTKTRAEVRGGGRKPWPQKGMGRAR 140
Query: 172 HGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPS 230
HG++R P F+GG +HGP+ P +H L R LGL LS + A+ L + E++++P+
Sbjct: 141 HGSIRSPLFKGGGVVHGPRSPTTHFYMLPFYKRVLGLTSTLSVKLAQDDLHIIENVDIPT 200
Query: 231 HKTKFIVNYYNQMENTKKVLLCDGGCIH-EKLKLATQNLHYVNVLPSVGLNVYSILQHDT 289
+F+ + + VL+ D + + AT L YVN++PS GLNVYS+L+HDT
Sbjct: 201 KDGQFLKDLIAERNWGPSVLIVDEDHMFPANICQATDELGYVNLMPSFGLNVYSMLKHDT 260
Query: 290 LVMSRDAVNKIVDRMHTPINR 310
LV++ AV + R+ +NR
Sbjct: 261 LVLTVAAVKHLEQRLLYQLNR 281
>gi|163815976|ref|ZP_02207346.1| hypothetical protein COPEUT_02156 [Coprococcus eutactus ATCC 27759]
gi|158448786|gb|EDP25781.1| 50S ribosomal protein L4 [Coprococcus eutactus ATCC 27759]
Length = 206
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 75/181 (41%), Positives = 113/181 (62%), Gaps = 2/181 (1%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
VF V I + I+H+ V QLA +QGT S KT SEVSG G+KPWRQKGTG AR G+ R PQ
Sbjct: 23 VFGVEINEHIMHKAVVGQLANSRQGTQSAKTRSEVSGGGRKPWRQKGTGHARQGSTRSPQ 82
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
+ GG + PKPR +++K+NKK ++L +K ALS++ AE KL+V + LE+ KT
Sbjct: 83 WTGGGVVFAPKPRDYSVKMNKKEKQLAMKSALSSKVAENKLVVVDKLELQEAKTSVFAKI 142
Query: 240 YNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNK 299
++ K +++ + + L+ N+ V + L+VY IL+++ LV++++AV
Sbjct: 143 LAKLSAPKALVVTKDK--NNNVVLSANNIPTVKTTVANSLSVYDILKYEKLVLTKEAVAA 200
Query: 300 I 300
I
Sbjct: 201 I 201
>gi|379724669|ref|YP_005316800.1| 50S ribosomal protein L4 [Paenibacillus mucilaginosus 3016]
gi|386727421|ref|YP_006193747.1| 50S ribosomal protein L4 [Paenibacillus mucilaginosus K02]
gi|378573341|gb|AFC33651.1| 50S ribosomal protein L4 [Paenibacillus mucilaginosus 3016]
gi|384094546|gb|AFH65982.1| 50S ribosomal protein L4 [Paenibacillus mucilaginosus K02]
Length = 207
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 120/200 (60%), Gaps = 1/200 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + LA VF + +++ V Q A + GTH TK SEV G G+K
Sbjct: 4 VAVFNVSGAQVGEVELAESVFGIEPHLHVLNEAVLMQRASLRAGTHKTKGRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G++R PQ++GG + GP PRS++ KL KKVRRL +K ALS++ ++
Sbjct: 64 PWKQKGTGRARQGSIRSPQWKGGGIVFGPTPRSYSYKLPKKVRRLAIKSALSSKVKSSEI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + L++ + KTK N ++ +K L+ E + L+ +N+ V + + G+N
Sbjct: 124 IVLDQLQMAAPKTKEFAAILNNLKVDRKALVVT-AAYEENVALSARNIPGVKFVVAEGIN 182
Query: 281 VYSILQHDTLVMSRDAVNKI 300
V ++ +D L++++DAV K+
Sbjct: 183 VLDVMVYDKLIITKDAVQKV 202
>gi|350403280|ref|XP_003486754.1| PREDICTED: 39S ribosomal protein L4, mitochondrial-like [Bombus
impatiens]
Length = 280
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 114/202 (56%), Gaps = 6/202 (2%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L D++ R DIIH +RWQ R TK SEV G GKKPW QKGTGR+R
Sbjct: 65 GLVFLHPDIYGASPRIDIIHENIRWQRMYRFVCYAHTKVRSEVRGGGKKPWPQKGTGRSR 124
Query: 172 HGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPS 230
H ++R P +RGG +HGP+ P +H L R GL LS + A+ L + +DLE+PS
Sbjct: 125 HSSIRSPLWRGGGVVHGPRSPTTHFYMLPFYTRVAGLTSTLSVKLAQDDLYIVKDLEIPS 184
Query: 231 HKTKFIVNYYNQMENTKKVLLCDGGCIH-EKLKLATQNLHYVNVLPSVGLNVYSILQHDT 289
+K +I + VL D I E + AT + +VN++P GLNVYS+L+H+T
Sbjct: 185 NKPSYIEQLIEERHWGPSVLFVDTDDIMPENISEATDTIKHVNLMPVYGLNVYSMLKHNT 244
Query: 290 LVMSRDAV----NKIVDRMHTP 307
L+++ A +KI+ +H P
Sbjct: 245 LILTERAARLIEDKILHHLHRP 266
>gi|329121829|ref|ZP_08250444.1| 50S ribosomal protein L4 [Dialister micraerophilus DSM 19965]
gi|327467767|gb|EGF13259.1| 50S ribosomal protein L4 [Dialister micraerophilus DSM 19965]
Length = 207
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 118/202 (58%), Gaps = 1/202 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N + G + L +F V + +IH+ V Q A + GTH+TKT V G GKK
Sbjct: 4 VTLYNIAGQAAGEVELNDSIFGVEYNEAVIHQAVVRQQANERLGTHATKTRGLVRGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R P + GG T+ GP PRSHA + KK RRL +K ALS + +L
Sbjct: 64 PWRQKGTGRARVGSIRSPLWVGGGTVFGPTPRSHAKGMTKKARRLAVKSALSEKLRANEL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + + + KTK +V E + K L+ DGG E L+ +N+ V + + G+N
Sbjct: 124 IVIDQINFEAPKTKQVVEMMKAFEAS-KALIIDGGKAVENTVLSARNIPGVKAIGTCGIN 182
Query: 281 VYSILQHDTLVMSRDAVNKIVD 302
+Y ++ + L M+++AV +I +
Sbjct: 183 IYDLVHYTKLFMTQEAVKQIEE 204
>gi|282882504|ref|ZP_06291125.1| ribosomal protein, L4/L1 family [Peptoniphilus lacrimalis 315-B]
gi|281297646|gb|EFA90121.1| ribosomal protein, L4/L1 family [Peptoniphilus lacrimalis 315-B]
Length = 207
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 72/180 (40%), Positives = 117/180 (65%), Gaps = 1/180 (0%)
Query: 119 DVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGP 178
++F+ + + +++ VV+ LA R+QGTHS KT SEV G G+KPWRQKGTGRAR G++R P
Sbjct: 22 NIFNCDVNEHVVYLVVKNILANRRQGTHSAKTRSEVRGGGRKPWRQKGTGRARQGSIRSP 81
Query: 179 QFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVN 238
QFRGG + KPR ++ KKVRRL LK L+++ + +++V + LE+ KTK +VN
Sbjct: 82 QFRGGGVVFAKKPRDYSYTTPKKVRRLALKSVLTSKLQDSEIIVLDKLELNEIKTKTVVN 141
Query: 239 YYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVN 298
++ KK L+ +E + + +N+ V +NVY +L++++LV+++DA++
Sbjct: 142 ILKDIKADKKALIVINDK-NENIIRSARNIEGVKTEFVKNINVYDLLKYNSLVITKDALD 200
>gi|225376410|ref|ZP_03753631.1| hypothetical protein ROSEINA2194_02052 [Roseburia inulinivorans DSM
16841]
gi|225211786|gb|EEG94140.1| hypothetical protein ROSEINA2194_02052 [Roseburia inulinivorans DSM
16841]
Length = 206
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 119/200 (59%), Gaps = 2/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G + L +F V + + ++H V QLA +QGT KT SEVSG G+K
Sbjct: 4 VAVYNMEGKEVGSLELNDAIFGVEVNEHLVHMAVLQQLANNRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ G + P PR ++ KLNKK +R LK AL++R E K
Sbjct: 64 PWRQKGTGHARQGSTRAPQWTHGGVVFAPVPRDYSFKLNKKEKRAALKSALTSRVNESKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V ++L++ KTK V N ++ K +++ + ++ + + NL V + +N
Sbjct: 124 VVVDELKLDEIKTKKFVEVMNNLKVEKALVVLNDNDVN--VIKSASNLATVKTAQTNEIN 181
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY IL++DT+V+++DAV I
Sbjct: 182 VYDILKYDTVVVTKDAVKTI 201
>gi|220928208|ref|YP_002505117.1| 50S ribosomal protein L4 [Clostridium cellulolyticum H10]
gi|254803726|sp|B8I7Y0.1|RL4_CLOCE RecName: Full=50S ribosomal protein L4
gi|219998536|gb|ACL75137.1| ribosomal protein L4/L1e [Clostridium cellulolyticum H10]
Length = 207
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 80/204 (39%), Positives = 127/204 (62%), Gaps = 6/204 (2%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + +N E G + L+ +VF + KD +H VV QLA R+QGT STKT SEV G
Sbjct: 1 MPKVDLYNMKGEVVGDIQLSDNVFGTDVNKDALHAVVVNQLANRRQGTQSTKTKSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
GKKPWRQKGTGRAR G++R Q+ G + GPKPRS+ L KKV+R+ +K AL+++ +
Sbjct: 61 GKKPWRQKGTGRARQGSIRSAQWVKGGIVLGPKPRSYRYTLPKKVKRIAMKSALTSKVSG 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQME-NTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
++ V + L + + KTK +V N ++ ++ +L+ D +E + + +N+ +
Sbjct: 121 NEIFVLDALALDAIKTKSMVGVLNNLKVDSSALLVID--SKNENIVKSARNIPGIKTAYV 178
Query: 277 VGLNVYSILQHDTLVMSRDAVNKI 300
LNV+ IL++D ++++DAV K+
Sbjct: 179 NTLNVFDILKYDKFIITKDAVEKV 202
>gi|182418832|ref|ZP_02950097.1| ribosomal protein L4/L1 family [Clostridium butyricum 5521]
gi|237666492|ref|ZP_04526477.1| ribosomal protein, L4/L1 family [Clostridium butyricum E4 str. BoNT
E BL5262]
gi|182377329|gb|EDT74890.1| ribosomal protein L4/L1 family [Clostridium butyricum 5521]
gi|237657691|gb|EEP55246.1| ribosomal protein, L4/L1 family [Clostridium butyricum E4 str. BoNT
E BL5262]
Length = 206
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 117/187 (62%), Gaps = 2/187 (1%)
Query: 114 MVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHG 173
M L VF + + +H+VV LA ++QGT STKT SEV G G KPWRQKGTGRAR G
Sbjct: 17 MELNESVFATEVNQYALHQVVVALLANKRQGTQSTKTRSEVRGGGIKPWRQKGTGRARQG 76
Query: 174 TLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKT 233
++R PQ+ G + PKPR + + K +R++ +K AL+++ + ++V E L + KT
Sbjct: 77 SIRAPQWIKGGIVFAPKPRDYRVSTPKSMRKVAMKSALTSKVQDNSMIVLESLNFDAPKT 136
Query: 234 KFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMS 293
K +V N +E K +++ +E + + +N+ V+V+P+ +NVY +L+ D ++M+
Sbjct: 137 KNVVAMLNALEAPKALIITAES--NEAVYKSARNIQGVSVIPANNINVYDLLKFDKVIMT 194
Query: 294 RDAVNKI 300
+DAV+KI
Sbjct: 195 KDAVSKI 201
>gi|307214236|gb|EFN89342.1| 39S ribosomal protein L4, mitochondrial [Harpegnathos saltator]
Length = 285
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 81/201 (40%), Positives = 115/201 (57%), Gaps = 2/201 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
GF+ L +F R DIIH+ VRWQ R TKT +EV G G+KPW QKGTGRAR
Sbjct: 70 GFVTLHPHIFAATPRIDIIHQNVRWQKMYRWVCYAHTKTRTEVRGGGRKPWPQKGTGRAR 129
Query: 172 HGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPS 230
HG++R P +RGG HGP+ P H L R GL LS + A+ L + +LE+P+
Sbjct: 130 HGSIRSPLWRGGGRAHGPRSPTPHFYMLPFFTRVAGLTSMLSVKLAQDDLHIINNLEIPT 189
Query: 231 HKTKFIVNYYNQMENTKKVLLCDGGCIHEK-LKLATQNLHYVNVLPSVGLNVYSILQHDT 289
+ +I + VL+ D I K + LAT + ++N++P GLNVYS+L+H+T
Sbjct: 190 SECSYIEQLVEERNWGPSVLIVDSYDIMPKNITLATDEIKHINLMPVYGLNVYSMLKHNT 249
Query: 290 LVMSRDAVNKIVDRMHTPINR 310
LV++ A I +++ +NR
Sbjct: 250 LVLTEQAARLIEEKLLFQLNR 270
>gi|325288579|ref|YP_004264760.1| 50S ribosomal protein L4P [Syntrophobotulus glycolicus DSM 8271]
gi|324963980|gb|ADY54759.1| LSU ribosomal protein L4P [Syntrophobotulus glycolicus DSM 8271]
Length = 209
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 120/199 (60%), Gaps = 1/199 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + L +F V ++H VV Q+A + GTHST SEV G G+K
Sbjct: 4 VQVVNMQGSPVGEIELNERIFGVTPNIGVMHSVVVAQMANARVGTHSTLGRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR GT+R P +RGG + GPKPR ++ K+ KKV+RL L ALS++ E L
Sbjct: 64 PWRQKGTGRARAGTIRSPLWRGGGIVFGPKPRDYSKKVPKKVKRLALCSALSSKVNESNL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V +DL+ + KTK +V + ++ +K L+ G + ++L+ +N+ V + +N
Sbjct: 124 IVVDDLKFDAPKTKDMVKFLEAIKVDRKALVVTEGS-DKNVQLSARNIQGVKTASAESIN 182
Query: 281 VYSILQHDTLVMSRDAVNK 299
V +L+HD LV+S+ AV K
Sbjct: 183 VVDLLKHDVLVISKQAVIK 201
>gi|393198948|ref|YP_006460790.1| 50S ribosomal protein L4 [Solibacillus silvestris StLB046]
gi|327438279|dbj|BAK14644.1| ribosomal protein L4 [Solibacillus silvestris StLB046]
Length = 207
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 114/189 (60%), Gaps = 1/189 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +F + + ++ V Q A +QG H K S V+G G+KPWRQKGTGRAR
Sbjct: 15 GEIELNDAIFGIEPNEAVLFDAVVAQRASLRQGNHKVKNRSAVAGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+RGG + GP PRS++ KL KKVRRL +K ALSA+ E L+V + L +
Sbjct: 75 QGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAIKSALSAKVLEQNLVVLDALLFDAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KTK + +E +KK L ++E L+ +N+ V VL + G+NV +L HD +V
Sbjct: 135 KTKDFKSVLAALEISKKALFVT-AEVNENAILSARNIPGVTVLTAEGINVLDLLGHDKVV 193
Query: 292 MSRDAVNKI 300
++DAV K+
Sbjct: 194 FTQDAVKKV 202
>gi|149020530|gb|EDL78335.1| mitochondrial ribosomal protein L4 (predicted), isoform CRA_a
[Rattus norvegicus]
Length = 302
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 85/221 (38%), Positives = 124/221 (56%), Gaps = 15/221 (6%)
Query: 97 QDLVIPVTNFFNEDKGFMVLAGDVFDVPIRK--------DIIHRVVRWQLAKRQQGTHST 148
Q V + F E G L DVF R DI+H+V WQ ++ T
Sbjct: 63 QAWVESLRGFEQERIGLAELHPDVFATTPRWSLTMKYKLDILHQVAVWQRNFKRISYAKT 122
Query: 149 KTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGL 207
KT +EVSG G+KPW+QKG+GRARHG++R P +RGG HGP+ P S+ L KVR LGL
Sbjct: 123 KTRAEVSGGGRKPWQQKGSGRARHGSIRSPIWRGGGVAHGPRGPTSYYYMLPMKVRALGL 182
Query: 208 KIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLK----L 263
K+AL+ + + L + + LE+P+ +++ VLL D HE++
Sbjct: 183 KVALTVKLMQDDLHIVDSLELPTADPQYLTELAQYRHWGSSVLLVD--LTHEEMPKNVMA 240
Query: 264 ATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNKIVDRM 304
AT L+ N++P+VGLNVYS+L+H TLV++ +V + D++
Sbjct: 241 ATSRLNSFNLIPAVGLNVYSMLKHQTLVLTLPSVAFLEDKL 281
>gi|110803426|ref|YP_699662.1| 50S ribosomal protein L4 [Clostridium perfringens SM101]
gi|122956495|sp|Q0SQE5.1|RL4_CLOPS RecName: Full=50S ribosomal protein L4
gi|110683927|gb|ABG87297.1| 50S ribosomal protein L4 [Clostridium perfringens SM101]
Length = 204
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 123/203 (60%), Gaps = 7/203 (3%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN++ G + L VF V + K +H+VV QLA ++QGT S KT SEV G
Sbjct: 1 MPKVGLFNKEGQQVGDIQLNEQVFGVEVNKYALHQVVVAQLANKRQGTQSAKTRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G KPWRQKGTGRAR G++R PQ+ G + PKPR + + + K +R++ + AL+++ A+
Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIKGGVVFAPKPRDYRMSIPKSMRKVAMTSALTSKVAD 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++V EDL + KTK V N E K +++ ++E + + +N+ V V+P
Sbjct: 121 --MVVLEDLNFEAPKTKEAVKMLNAFEAKKTLIIT--AEVNENVYKSARNIEGVTVMPVN 176
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
+NVY +L TL+++++AVNKI
Sbjct: 177 NINVYDLLNCKTLMITKEAVNKI 199
>gi|421186876|ref|ZP_15644257.1| 50S ribosomal protein L4P [Oenococcus oeni AWRIB418]
gi|399965126|gb|EJN99752.1| 50S ribosomal protein L4P [Oenococcus oeni AWRIB418]
Length = 207
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 76/189 (40%), Positives = 112/189 (59%), Gaps = 1/189 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + LA +F + + ++ V Q A +QGTHS K S VSG G+KPWRQKGTG AR
Sbjct: 15 GEVELADSIFAIEPNEAVVTDAVLMQRASLRQGTHSVKNRSTVSGGGRKPWRQKGTGNAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+RGG GP PRS+A K+N+K RL LK LS + + ++ ++L
Sbjct: 75 QGSIRAPQWRGGAISMGPIPRSYAYKINRKAYRLALKSVLSDKVSAKNFVIIDELNFEKP 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
TK I + N++E TKK LL +E KL+ +NL V V + G+NVY +++ +V
Sbjct: 135 STKAIADSLNKLEATKKTLLVVDDA-NENAKLSARNLPNVQVTTASGVNVYDLVKAQKVV 193
Query: 292 MSRDAVNKI 300
+ + AV ++
Sbjct: 194 IVQSAVKQV 202
>gi|389816125|ref|ZP_10207312.1| 50S ribosomal protein L4 [Planococcus antarcticus DSM 14505]
gi|388465389|gb|EIM07707.1| 50S ribosomal protein L4 [Planococcus antarcticus DSM 14505]
Length = 207
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 77/181 (42%), Positives = 107/181 (59%), Gaps = 1/181 (0%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
VF + + ++ V Q A +QG H K SEV+G GKKPWRQKGTGRAR G++R PQ
Sbjct: 23 VFGIEPNESVLFDAVVSQRASLRQGNHKVKNRSEVAGGGKKPWRQKGTGRARQGSIRSPQ 82
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
+RGG + GP PRS++ KL KKVRRL L+ ALS+ L+V E L + KTK
Sbjct: 83 WRGGGVVFGPTPRSYSYKLPKKVRRLALRSALSSAVVGKNLMVLEGLTFDAPKTKAFTQL 142
Query: 240 YNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNK 299
+ KK L + E + + +NLH + V+ + G+NV +L HD +VM++ A+ K
Sbjct: 143 IQDLSIGKKALFVTAD-LDENVAKSARNLHGMTVVAADGINVLDLLGHDKIVMTKAAIEK 201
Query: 300 I 300
I
Sbjct: 202 I 202
>gi|308272978|emb|CBX29582.1| 50S ribosomal protein L4 [uncultured Desulfobacterium sp.]
Length = 207
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 73/205 (35%), Positives = 127/205 (61%), Gaps = 2/205 (0%)
Query: 100 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
+I V N E + L +F++P++ ++H VV QLA R+ G+ S K S+V G+ +
Sbjct: 3 LIDVYNLNGEKVSQLELTDSIFNIPVKPSVLHEVVTMQLACRRAGSASVKHRSDVRGSTR 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
K +RQKGTGRAR G ++ P RGG ++ GP PRS++ K+ KK+++L LK+ALS++
Sbjct: 63 KLFRQKGTGRARRGDIKSPLLRGGGSIFGPDPRSYSYKVPKKIKKLALKMALSSKTINNN 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGL 279
L+V + E+ KTK + N ++ K +++ + ++E L+L+++N+ + V+ GL
Sbjct: 123 LIVIDKFELEEAKTKNFIAVINTLKIKKALIITEK--LNESLELSSRNVPDIKVMRFEGL 180
Query: 280 NVYSILQHDTLVMSRDAVNKIVDRM 304
NVY IL++D L++ ++ I R+
Sbjct: 181 NVYDILKYDKLILLETSIKGIEGRL 205
>gi|258646052|ref|ZP_05733521.1| ribosomal protein L4/L1 family protein [Dialister invisus DSM
15470]
gi|260403422|gb|EEW96969.1| ribosomal protein L4/L1 family protein [Dialister invisus DSM
15470]
Length = 208
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 76/189 (40%), Positives = 111/189 (58%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L VF V + +IH+ V Q+A + GTH+TKT V G G+KPW+QKGTGRAR
Sbjct: 15 GEIELNDSVFGVEYNEAVIHQAVVRQMANERLGTHATKTRGLVRGGGRKPWKQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R P + GG T+ GP PRSHA + +K R+L +K ALS + +L+V + + +
Sbjct: 75 VGSIRSPLWVGGGTVFGPTPRSHAKDMTRKARQLAVKSALSEKLRANELIVVDAINFDTP 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KTK +V + K L+ DGG E L+ +N+ V GLN+Y I+ + L
Sbjct: 135 KTKEVVKFLAAFNVDGKALIVDGGTASENTVLSARNIPGVKAYAPSGLNIYDIVHYTKLF 194
Query: 292 MSRDAVNKI 300
+++DAV KI
Sbjct: 195 LTQDAVKKI 203
>gi|15896382|ref|NP_349731.1| 50S ribosomal protein L4 [Clostridium acetobutylicum ATCC 824]
gi|337738339|ref|YP_004637786.1| 50S ribosomal protein L4 [Clostridium acetobutylicum DSM 1731]
gi|384459849|ref|YP_005672269.1| 50S ribosomal protein L4 [Clostridium acetobutylicum EA 2018]
gi|46577285|sp|Q97EH9.1|RL4_CLOAB RecName: Full=50S ribosomal protein L4
gi|15026198|gb|AAK81071.1|AE007808_24 Ribosomal protein L4 [Clostridium acetobutylicum ATCC 824]
gi|325510538|gb|ADZ22174.1| 50S ribosomal protein L4 [Clostridium acetobutylicum EA 2018]
gi|336292263|gb|AEI33397.1| 50S ribosomal protein L4 [Clostridium acetobutylicum DSM 1731]
Length = 206
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 80/204 (39%), Positives = 124/204 (60%), Gaps = 7/204 (3%)
Query: 101 IPVTNFFNEDKGFMV----LAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSG 156
+P FN++ G V L+ VF I + +H+VV QLA ++QGT S KT +EVSG
Sbjct: 1 MPTVEVFNKE-GKKVEDIELSEKVFGAKISESALHQVVVAQLANKRQGTQSAKTRTEVSG 59
Query: 157 TGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAA 216
G KPWRQKGTGRAR G++R PQ+ G + PKPR + I + K +RR + AL+++
Sbjct: 60 GGIKPWRQKGTGRARQGSIRAPQWIHGGVVFAPKPRDYRISIPKSMRRTAMLSALTSKVN 119
Query: 217 EGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
+ +++V ++L++ + KTK IV N E KK L+ K + +N+ V+P+
Sbjct: 120 DKEMIVLDELKIDAPKTKEIVKMLNAFE-AKKALIVVAESDQNVYK-SVRNIQGAAVIPA 177
Query: 277 VGLNVYSILQHDTLVMSRDAVNKI 300
LNVY IL++D +++++AV+KI
Sbjct: 178 NNLNVYDILKYDKFIVTKEAVSKI 201
>gi|374578947|ref|ZP_09652041.1| 50S ribosomal protein L4, bacterial/organelle [Desulfosporosinus
youngiae DSM 17734]
gi|374415029|gb|EHQ87464.1| 50S ribosomal protein L4, bacterial/organelle [Desulfosporosinus
youngiae DSM 17734]
Length = 207
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 80/199 (40%), Positives = 112/199 (56%), Gaps = 1/199 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + L+ +VF + ++H V QLA ++GT S EV G G+K
Sbjct: 4 VQVLNMQGAAVGEIELSENVFGITPNVHVLHSAVVSQLAGERRGTQSALLRGEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G+ R P +RGG + PKPR + KL KKVRRL L ALS++ E +L
Sbjct: 64 PWRQKGTGRARSGSTRSPLWRGGGIIFAPKPRKYGFKLPKKVRRLALYSALSSKVMEQQL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + L + KT+ IV + KK ++ L+ A +N+ V + G+N
Sbjct: 124 IVLDALSISEAKTREIVKVLKALNIDKKAMIVMDNADEAVLRSA-RNIEGVKAIDVAGMN 182
Query: 281 VYSILQHDTLVMSRDAVNK 299
VY +L HD LVM++DAV K
Sbjct: 183 VYDLLHHDILVMTKDAVTK 201
>gi|110800870|ref|YP_697093.1| 50S ribosomal protein L4 [Clostridium perfringens ATCC 13124]
gi|168211904|ref|ZP_02637529.1| ribosomal protein L4 [Clostridium perfringens B str. ATCC 3626]
gi|168215177|ref|ZP_02640802.1| ribosomal protein L4 [Clostridium perfringens CPE str. F4969]
gi|168216632|ref|ZP_02642257.1| ribosomal protein L4 [Clostridium perfringens NCTC 8239]
gi|169347046|ref|ZP_02865988.1| ribosomal protein L4 [Clostridium perfringens C str. JGS1495]
gi|182626931|ref|ZP_02954664.1| ribosomal protein L4 [Clostridium perfringens D str. JGS1721]
gi|422347466|ref|ZP_16428378.1| 50S ribosomal protein L4 [Clostridium perfringens WAL-14572]
gi|422875350|ref|ZP_16921835.1| 50S ribosomal protein L4 [Clostridium perfringens F262]
gi|123148513|sp|Q0TMP7.1|RL4_CLOP1 RecName: Full=50S ribosomal protein L4
gi|110675517|gb|ABG84504.1| 50S ribosomal protein L4 [Clostridium perfringens ATCC 13124]
gi|169296729|gb|EDS78858.1| ribosomal protein L4 [Clostridium perfringens C str. JGS1495]
gi|170710168|gb|EDT22350.1| ribosomal protein L4 [Clostridium perfringens B str. ATCC 3626]
gi|170713383|gb|EDT25565.1| ribosomal protein L4 [Clostridium perfringens CPE str. F4969]
gi|177907721|gb|EDT70336.1| ribosomal protein L4 [Clostridium perfringens D str. JGS1721]
gi|182381262|gb|EDT78741.1| ribosomal protein L4 [Clostridium perfringens NCTC 8239]
gi|373224764|gb|EHP47101.1| 50S ribosomal protein L4 [Clostridium perfringens WAL-14572]
gi|380303880|gb|EIA16176.1| 50S ribosomal protein L4 [Clostridium perfringens F262]
Length = 204
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 123/203 (60%), Gaps = 7/203 (3%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN++ G + L VF V + K +H+VV QLA ++QGT S KT SEV G
Sbjct: 1 MPKVGLFNKEGQQVGDIQLNEQVFGVEVNKYALHQVVVAQLANKRQGTQSAKTRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G KPWRQKGTGRAR G++R PQ+ G + PKPR + + + K +R++ + AL+++ A+
Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIKGGVVFAPKPRDYRMSIPKSMRKVAMTSALTSKVAD 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++V EDL + KTK V N E K +++ ++E + + +N+ V V+P
Sbjct: 121 --MVVLEDLTFEAPKTKEAVKMLNAFEAKKTLIIT--AEVNENVYKSARNIEGVTVMPVN 176
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
+NVY +L TL+++++AVNKI
Sbjct: 177 NINVYDLLNCKTLMITKEAVNKI 199
>gi|222150446|ref|YP_002559599.1| 50S ribosomal protein L4 [Macrococcus caseolyticus JCSC5402]
gi|254803742|sp|B9E9J2.1|RL4_MACCJ RecName: Full=50S ribosomal protein L4
gi|222119568|dbj|BAH16903.1| 50S ribosomal protein L4 [Macrococcus caseolyticus JCSC5402]
Length = 207
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 78/190 (41%), Positives = 116/190 (61%), Gaps = 3/190 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +VF + + ++ + Q A +QGTH+ K S VSG G+KPW+QKGTGRAR
Sbjct: 15 GSIELNDNVFGIEPNQHVLFEAINLQRASMRQGTHAVKNRSAVSGGGRKPWKQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
GT+R PQ+RGG + GP PRS++ K+ KK+RRL L+ ALSA+ E V E L +
Sbjct: 75 QGTIRAPQWRGGGIVFGPTPRSYSYKMPKKMRRLALRSALSAKVQENAFTVLESLTFDAP 134
Query: 232 KTKFIVNYYNQMENTKKVL-LCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTL 290
KTK N +E KKVL + + ++ + L+ +N+ V V+ + GLNV I+ + +
Sbjct: 135 KTKEFKNMTTTLELPKKVLFVVEAEDVN--VALSARNIPGVTVITTTGLNVLDIVHANQV 192
Query: 291 VMSRDAVNKI 300
VM++ AV K+
Sbjct: 193 VMTKGAVEKV 202
>gi|365926342|ref|ZP_09449105.1| 50S ribosomal protein L4 [Lactobacillus mali KCTC 3596 = DSM 20444]
gi|420265979|ref|ZP_14768491.1| 50S ribosomal protein L4 [Lactobacillus mali KCTC 3596 = DSM 20444]
gi|394426842|gb|EJE99634.1| 50S ribosomal protein L4 [Lactobacillus mali KCTC 3596 = DSM 20444]
Length = 207
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 81/205 (39%), Positives = 121/205 (59%), Gaps = 8/205 (3%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P F +D G + L ++F + +++ V Q A +QGTH+ K S+VSG
Sbjct: 1 MPKVTLFKQDGSKNGEVELNENIFGIEPNDNVVFDAVIMQRASLRQGTHAVKNRSDVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
GKKPWRQKGTGRAR G++R PQ+ GG T+ GP PRS++ KL KKVRRL +K LS +
Sbjct: 61 GKKPWRQKGTGRARQGSIRSPQWVGGGTVFGPTPRSYSYKLPKKVRRLAIKSVLSQKVLN 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVL--LCDGGCIHEKLKLATQNLHYVNVLP 275
LL+ + L KTK N ++ KVL L DG ++ L+ +NL V V+
Sbjct: 121 ESLLIVDKLSFDQPKTKAFAEVLNSLDVKTKVLVVLEDG---NDLAALSARNLPNVTVVS 177
Query: 276 SVGLNVYSILQHDTLVMSRDAVNKI 300
+ G+NV ++ D LVM+++A++++
Sbjct: 178 AKGVNVLDVINSDKLVMTQEALSQV 202
>gi|54022701|ref|YP_116943.1| 50S ribosomal protein L4 [Nocardia farcinica IFM 10152]
gi|81603036|sp|Q5Z1W2.1|RL4_NOCFA RecName: Full=50S ribosomal protein L4
gi|54014209|dbj|BAD55579.1| putative ribosomal protein L4 [Nocardia farcinica IFM 10152]
Length = 230
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 86/207 (41%), Positives = 120/207 (57%), Gaps = 6/207 (2%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+LV+PV + G + L ++FDV ++H+VV QLA +QGTH+TKT EVSG
Sbjct: 15 NLVLPVKEAGGKSNGTVELPAEIFDVTANIALMHQVVTAQLAAARQGTHATKTRGEVSGG 74
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
GKKP+RQKGTGRAR G+ R PQF GG T+HGP+PR ++ + KK+ R L ALS RA
Sbjct: 75 GKKPYRQKGTGRARQGSTRAPQFTGGGTVHGPQPRDYSQRTPKKMIRAALHGALSDRARN 134
Query: 218 GKLLVFEDL---EVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
++ V +L + PS TK N+ ++ + KK L+ G K + NL V +
Sbjct: 135 DRIHVVSELVAGQTPS--TKTAKNFLAELSDRKKFLVVVGREDVTAWK-SVANLQNVQPI 191
Query: 275 PSVGLNVYSILQHDTLVMSRDAVNKIV 301
LN Y +L D +V S +A+N V
Sbjct: 192 APDQLNTYDVLNSDDVVFSVEALNAFV 218
>gi|218779761|ref|YP_002431079.1| 50S ribosomal protein L4 [Desulfatibacillum alkenivorans AK-01]
gi|226730651|sp|B8FET4.1|RL4_DESAA RecName: Full=50S ribosomal protein L4
gi|218761145|gb|ACL03611.1| ribosomal protein L4/L1e [Desulfatibacillum alkenivorans AK-01]
Length = 206
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 75/204 (36%), Positives = 122/204 (59%), Gaps = 2/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N E + LA ++F V ++ ++H VV QLA R+ GT K S+V G+ +K
Sbjct: 4 VEVCNMSGEKVSEIDLADEIFGVEVKGSVLHEVVVMQLANRRAGTVCVKNRSDVRGSTRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
+RQKGTGRAR G ++ P RGG + GP PR ++ K+ KKVR+ LK+ALS++ A+ L
Sbjct: 64 LYRQKGTGRARKGDIKSPVLRGGGVVFGPHPRDYSYKVPKKVRKAALKMALSSKLADNSL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
V +++++P KTK M +++ G + L+L+ +N+ V V+P+ GLN
Sbjct: 124 KVVDNMDLPEIKTKAFAEAMAAMGVDTALIVTTGE--EKNLELSARNVKGVKVMPTAGLN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL++ L++++ A+ I R+
Sbjct: 182 VYDILKYGNLILAQGAIEAIEGRL 205
>gi|339006542|ref|ZP_08639117.1| 50S ribosomal protein L4 [Brevibacillus laterosporus LMG 15441]
gi|338775751|gb|EGP35279.1| 50S ribosomal protein L4 [Brevibacillus laterosporus LMG 15441]
Length = 207
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 120/203 (59%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNE---DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N+ G + LA VF + ++ + Q A ++QGTH K SEV G
Sbjct: 1 MPKVALYNQTGAQVGDIELAEAVFGIEPNNAVLFDAIVMQQASQRQGTHDVKNRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ++GG + GP PR + KLN+KVRRL LK ALS +
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWKGGGVVFGPTPRKYGYKLNRKVRRLALKSALSTKVQN 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+LLV + L + + KTK + ++ +KVL+ + + L+++N+ + +
Sbjct: 121 NELLVLDALTLSAPKTKEFAGILSSLKVDRKVLIVTAD-FDQNIALSSRNIPGAKCIDAA 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
G+NV ++ HD ++++++AV K+
Sbjct: 180 GVNVLDLVAHDKVIVTKEAVAKV 202
>gi|421875276|ref|ZP_16306870.1| 50S ribosomal protein L4 [Brevibacillus laterosporus GI-9]
gi|372455744|emb|CCF16419.1| 50S ribosomal protein L4 [Brevibacillus laterosporus GI-9]
Length = 207
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 120/203 (59%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNE---DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N+ G + LA VF + ++ + Q A ++QGTH K SEV G
Sbjct: 1 MPKVALYNQTGAQVGDIELAEAVFGIEPNNAVLFDAIVMQQASQRQGTHDVKNRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ++GG + GP PR + KLN+KVRRL LK ALS +
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWKGGGVVFGPTPRKYGYKLNRKVRRLALKSALSTKVQN 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+LLV + L + + KTK + ++ +KVL+ + + L+++N+ + +
Sbjct: 121 NELLVLDALTMSAPKTKEFAGILSSLKVDRKVLIVTAD-FDQNIALSSRNIPGAKCIDAA 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
G+NV ++ HD ++++++AV K+
Sbjct: 180 GVNVLDLVAHDKVIVTKEAVAKV 202
>gi|260891593|ref|ZP_05902856.1| hypothetical protein GCWU000323_02808 [Leptotrichia hofstadii
F0254]
gi|260858701|gb|EEX73201.1| ribosomal protein L4/L1 family protein [Leptotrichia hofstadii
F0254]
Length = 214
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 130/209 (62%), Gaps = 9/209 (4%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+PV N + D G + + DVF + K ++H V+ +LA+ +QG+ STKT +EV G
Sbjct: 1 MPVLNIYKLDGSQAGTIEVNNDVFGIEPNKHVMHEVLVAELAEARQGSASTKTRAEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KP+RQKGTGRAR G+ R P GG +HGPKPR++A K+NKKVR+L LK AL+ + E
Sbjct: 61 GRKPFRQKGTGRARQGSTRAPHMVGGGVVHGPKPRNYAKKVNKKVRKLALKSALATKINE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQM--ENTKKVLLC--DGGCIHEK--LKLATQNLHYV 271
G ++V +D + + KTK +N+ + + K++ + D I L L+T+N+ V
Sbjct: 121 GNVIVLDDFTLETPKTKTFINFAKALNFDGVKQLYITNDDTDNIDRDYFLYLSTRNIEKV 180
Query: 272 NVLPSVGLNVYSILQHDTLVMSRDAVNKI 300
+ + L++Y +++ D ++++++A+ I
Sbjct: 181 AAINTRDLSIYWLIKQDKVILTKEALATI 209
>gi|46396649|sp|Q8XHS4.2|RL4_CLOPE RecName: Full=50S ribosomal protein L4
Length = 204
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 123/203 (60%), Gaps = 7/203 (3%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN++ G + L VF V + K +H+VV QLA ++QGT S KT SEV G
Sbjct: 1 MPKVGLFNKEGQQVGDIQLNEQVFGVEVNKYALHQVVVAQLANKRQGTQSAKTRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G KPWRQKGTGRAR G++R PQ+ G + PKPR + + + K +R++ + AL+++ A+
Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIKGGVVFAPKPRDYRMSIPKSMRKVAMTSALTSKVAD 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++V EDL + KTK V N E K +++ ++E + + +N+ V V+P
Sbjct: 121 --MVVLEDLTFEAPKTKEAVKMLNAFEAKKTLIIT--AEVNENVYKSARNIRGVTVMPVN 176
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
+NVY +L TL+++++AVNKI
Sbjct: 177 NINVYDLLNCKTLMITKEAVNKI 199
>gi|167519925|ref|XP_001744302.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777388|gb|EDQ91005.1| predicted protein [Monosiga brevicollis MX1]
Length = 229
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 82/198 (41%), Positives = 117/198 (59%), Gaps = 1/198 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G M L VF IR DI+HRVV WQ A ++G TKT EV G G+KP QKGTGRAR
Sbjct: 14 GVMELDPTVFGEEIRVDIMHRVVVWQRALWRKGNAKTKTRGEVRGGGRKPHPQKGTGRAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R P +RGG +HGP PR + KL +KVR+ G+++A+S R + L++ +DL +P+
Sbjct: 74 TGSIRVPNWRGGGVVHGPIPRDWSQKLPRKVRQKGVRVAISTRYQQNDLVIVDDLVLPTL 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KTK + Q + + LK A +N+ + + G +VY+IL+HD LV
Sbjct: 134 KTKSLAEIAAQHRLESALFVYGHDEDSMNLKWACRNMPAFHATSAAGAHVYNILKHDKLV 193
Query: 292 MSRDAVNKIVDRMHTPIN 309
+S AV + R+H P+N
Sbjct: 194 LSVSAVRDLERRLH-PVN 210
>gi|355681921|ref|ZP_09062209.1| 50S ribosomal protein L4 [Clostridium citroniae WAL-17108]
gi|354811332|gb|EHE95965.1| 50S ribosomal protein L4 [Clostridium citroniae WAL-17108]
Length = 206
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 120/201 (59%), Gaps = 4/201 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G + L VF V + + ++H V QLA ++QGT KT SEVSG G+K
Sbjct: 4 VSVYNMEGKEVGTLELNDAVFGVEVNEHLVHLAVVAQLANKRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ++GG + P PR + I+LNKK +R LK AL++R + K
Sbjct: 64 PWRQKGTGHARQGSTRSPQWKGGGVVFAPTPRDYTIRLNKKEKRAALKSALTSRVQDNKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKK-VLLCDGGCIHEKLKLATQNLHYVNVLPSVGL 279
+V ++L++ KTK N + ++ +K V+L D + L+ +N+ V +
Sbjct: 124 IVLDELKLDEIKTKKFQNVMDNLKVSKALVVLADN---DQNAVLSARNIADVKTAQVNSI 180
Query: 280 NVYSILQHDTLVMSRDAVNKI 300
NVY IL+++T+V ++ AV I
Sbjct: 181 NVYDILKYNTVVATKAAVASI 201
>gi|271962633|ref|YP_003336829.1| 50S ribosomal protein L4 [Streptosporangium roseum DSM 43021]
gi|270505808|gb|ACZ84086.1| 50S ribosomal protein L4 [Streptosporangium roseum DSM 43021]
Length = 215
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 124/208 (59%), Gaps = 8/208 (3%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I V + G + L GD+FD + +IH+VV QLA R+QGTH KT EVSG GKK
Sbjct: 4 IDVLDVSGAKTGTVDLPGDIFDAKVNIPLIHQVVVAQLAARRQGTHKAKTRGEVSGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQKGTGRAR G+ R PQF GG +HGP PR ++ K KK++ L+ ALS RA G++
Sbjct: 64 PYRQKGTGRARQGSTRAPQFAGGGIVHGPLPRDYSQKTPKKMKAAALRGALSDRANGGRV 123
Query: 221 LVFEDL---EVPSHKTKFIVNYYNQMENTKKVL-LCDGGCIHEKLKLATQNLHYVNVLPS 276
V L E P KTK + ++ T+ VL + D G E L+ +N V++L +
Sbjct: 124 HVVSALVQGETP--KTKAALESLRKITQTRSVLVVVDEG--DELTWLSLRNAPEVHLLDA 179
Query: 277 VGLNVYSILQHDTLVMSRDAVNKIVDRM 304
LN Y +L +D +V +++A +++V R+
Sbjct: 180 GQLNTYDVLCYDDVVFTQEAYDQVVTRL 207
>gi|350565593|ref|ZP_08934344.1| 50S ribosomal protein L4 [Peptoniphilus indolicus ATCC 29427]
gi|348663600|gb|EGY80162.1| 50S ribosomal protein L4 [Peptoniphilus indolicus ATCC 29427]
Length = 207
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 126/204 (61%), Gaps = 2/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N E+ + L ++FD+ + + ++ VV+ LA ++QGT S KT SEV G G+K
Sbjct: 4 VQVINMNGENISEVELNEEIFDIEVNEHAVYLVVKNILANKRQGTKSAKTRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQFRGG + PKPR + KKVRRL LK L+++ +G++
Sbjct: 64 PWRQKGTGRARQGSIRSPQFRGGGVVFAPKPRDFSYTTPKKVRRLALKSVLTSKLRDGEI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V ++++ KTK N + KK L+ + ++ A N+ V + + +N
Sbjct: 124 IVLDNIKFDELKTKNFQKMLNAIGADKKALVVTAENDKDVVR-AGANIANVQISEARNIN 182
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY +L++++LV+++DA+ K+V+ +
Sbjct: 183 VYDLLKYNSLVITQDAL-KVVEEV 205
>gi|410950408|ref|XP_003981898.1| PREDICTED: 39S ribosomal protein L4, mitochondrial [Felis catus]
Length = 294
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 91/257 (35%), Positives = 136/257 (52%), Gaps = 8/257 (3%)
Query: 53 GLSFLASRKFSTTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKG 112
GL+ LA + P++ A P +L++ L T Q V + + E G
Sbjct: 20 GLNALAEEAVHP-VAKPEAVVSAGPQAPVLRRCELPVPATRRPVQAWVESLRGYQQERVG 78
Query: 113 FMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARH 172
L DVF R DI+H+V WQ ++ TKT +EV G G+KPW QKG+GR+RH
Sbjct: 79 LAELHPDVFSTAPRMDILHQVAIWQKNFKRISYAKTKTRAEVKGGGRKPWPQKGSGRSRH 138
Query: 173 GTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R P +RGG HGP+ P S+ L KVR GLK+AL+ + A+ L + + LE+P+
Sbjct: 139 GSIRSPIWRGGGIAHGPRGPTSYYYMLPMKVRVQGLKVALTVKLAQDYLHIVDSLELPTS 198
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLK----LATQNLHYVNVLPSVGLNVYSILQH 287
+++ VLL D HE + AT L N++P+VGLNV+SIL+H
Sbjct: 199 DPQYLTELARYRHWGDSVLLVD--LAHEDMPQNAVAATSGLKTFNLIPAVGLNVHSILKH 256
Query: 288 DTLVMSRDAVNKIVDRM 304
TLV++ V + +++
Sbjct: 257 QTLVLTLQTVAFLEEKL 273
>gi|410727963|ref|ZP_11366156.1| 50S ribosomal protein L4, bacterial/organelle [Clostridium sp.
Maddingley MBC34-26]
gi|410597523|gb|EKQ52134.1| 50S ribosomal protein L4, bacterial/organelle [Clostridium sp.
Maddingley MBC34-26]
Length = 206
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 125/203 (61%), Gaps = 5/203 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN++ M L VF I + +H+VV LA ++QGT STKT SEV G
Sbjct: 1 MPTVGVFNKEGNKVADMELNESVFAAEINEYALHQVVVALLANKRQGTQSTKTRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G KPWRQKGTGRAR G++R PQ+ G + PKPR + + + K +R++ +K AL+++ +
Sbjct: 61 GIKPWRQKGTGRARQGSIRSPQWIKGGIVFAPKPRDYRVSVPKSMRKVAMKSALTSKVQD 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+++V + L + KTK IV +E K +++ +E + + +N+ ++V+P+
Sbjct: 121 NQMIVLDSLNFEAPKTKNIVEMLKALEANKALIITAES--NEVVYKSARNIQGISVIPAN 178
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
+NVY +L+++ L++++DAV+KI
Sbjct: 179 NINVYDLLKYEKLIITKDAVSKI 201
>gi|210611126|ref|ZP_03288740.1| hypothetical protein CLONEX_00930 [Clostridium nexile DSM 1787]
gi|210152113|gb|EEA83120.1| hypothetical protein CLONEX_00930 [Clostridium nexile DSM 1787]
Length = 206
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 118/200 (59%), Gaps = 2/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G + L VF V + + ++H V QLA ++QGT KT SEVSG G+K
Sbjct: 4 VSVYNIEGKEVGTIDLNDAVFGVEVNEHLLHMAVVNQLANKRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ GG + P PR ++ KLNKK +R LK AL+ R E K
Sbjct: 64 PWRQKGTGHARQGSTRSPQWTGGGVVFAPTPRDYSFKLNKKEKRAALKSALTTRVLENKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V +++ KTK N N +E +K +++ + G + L+ +N+ V + +N
Sbjct: 124 IVLDEMNFGEIKTKNFQNMLNNLEVSKALVVLEDG--NTNAALSARNIANVKTAWTNTIN 181
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY IL+++T+++++ V I
Sbjct: 182 VYDILKYNTVIVTKAVVATI 201
>gi|435852976|ref|YP_007314295.1| 50S ribosomal protein L4, bacterial/organelle [Halobacteroides
halobius DSM 5150]
gi|433669387|gb|AGB40202.1| 50S ribosomal protein L4, bacterial/organelle [Halobacteroides
halobius DSM 5150]
Length = 209
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 121/200 (60%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+P+ + + G + L ++FDV I ++++H V QLA ++ GT TKT +V G G+K
Sbjct: 4 LPLYDTEGQTVGNVDLNDEIFDVEINENVVHEAVTAQLAAKRAGTAKTKTRGQVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRARHG++R P + GG T GP+PRS+ + KKV++L +K ALSA+ AE L
Sbjct: 64 PWRQKGTGRARHGSIRSPIWVGGGTTFGPQPRSYEKNVPKKVKKLAVKSALSAKVAENSL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
V ++ + KTK +V+ + + K +L + + N+ V V+ S +N
Sbjct: 124 SVVDEFDFEQPKTKQMVSVLDNFKAADKKVLIVLNVRDNNIYKSASNIPGVKVVTSNQVN 183
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY +L D +++++ A+N++
Sbjct: 184 VYDVLNSDKVLITKGAINQV 203
>gi|358066907|ref|ZP_09153396.1| 50S ribosomal protein L4 [Johnsonella ignava ATCC 51276]
gi|356694946|gb|EHI56598.1| 50S ribosomal protein L4 [Johnsonella ignava ATCC 51276]
Length = 206
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 118/200 (59%), Gaps = 2/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + ++ G M L +F + + + I+H V LA ++QGT KT EV G G+K
Sbjct: 4 VSVYDIEGKEVGDMELNDAIFGIEVNEHIVHMAVVAHLANKRQGTQKAKTRGEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G++R PQ++GG + P PR ++IKLNKK RRL LK AL++R + K
Sbjct: 64 PWRQKGTGHARQGSIRSPQWKGGGVVFAPTPRDYSIKLNKKERRLALKSALTSRVNDNKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V +D ++ KTK +V ++ +K +++ L+ +N+ V +N
Sbjct: 124 IVVDDFKMDEIKTKKMVAALTNLKVSKALIVTSEN--ETNTVLSARNIRGVKTASPNTIN 181
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY IL+++T+V S+ AVN I
Sbjct: 182 VYDILKYNTVVASKAAVNTI 201
>gi|303328093|ref|ZP_07358532.1| ribosomal protein L4/L1 family protein [Desulfovibrio sp. 3_1_syn3]
gi|345891281|ref|ZP_08842131.1| 50S ribosomal protein L4 [Desulfovibrio sp. 6_1_46AFAA]
gi|302861919|gb|EFL84854.1| ribosomal protein L4/L1 family protein [Desulfovibrio sp. 3_1_syn3]
gi|345048423|gb|EGW52258.1| 50S ribosomal protein L4 [Desulfovibrio sp. 6_1_46AFAA]
Length = 210
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 120/203 (59%), Gaps = 2/203 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + ++ G M LA DVF++ +R +I++ VVR Q+A ++ GTH+ KT + VSG G K
Sbjct: 4 VKVYDQNKQESGEMTLASDVFEIEVRPEILNLVVRAQMAAKRAGTHNAKTRAFVSGGGVK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G+ R P +RGG + GP PR + K+N KVR L LK+ALS+R A L
Sbjct: 64 PWKQKGTGRARSGSNRSPIWRGGAIIFGPSPRDYGFKVNSKVRALALKMALSSRLAGESL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
LV + +E+P KTK + K +++ +E L + +N+ + + L+
Sbjct: 124 LVVKGIELPEAKTKHFAKVAGALGLGKALIVTPED--NEALSRSARNIPGLTLTTPDRLS 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDR 303
V +L+H LV+ AV + R
Sbjct: 182 VLDVLKHKQLVLLEGAVESVQAR 204
>gi|418904613|ref|ZP_13458642.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|377766153|gb|EHT89986.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIGC345D]
Length = 207
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 111/189 (58%), Gaps = 1/189 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ VF + ++ + Q A +QGTH+ K S VSG G+KPW+QKGTGRAR
Sbjct: 15 GSIELSDAVFGIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVSGGGRKPWKQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
GT+R PQ+RGG + GP PRS+A K+ KK+RRL L+ ALS +A E L V + S
Sbjct: 75 QGTIRAPQWRGGGIVFGPTPRSYAYKMPKKMRRLALRSALSFKAQENGLTVVDAFNFESP 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KTK N + +E KKVL+ ++L+ +N+ V V + GLNV I D+LV
Sbjct: 135 KTKEFKNVLSTLEQPKKVLVVTENE-DVNVELSARNIPGVQVTTAQGLNVLDITNADSLV 193
Query: 292 MSRDAVNKI 300
++ A K+
Sbjct: 194 ITEAAAKKV 202
>gi|334326371|ref|XP_001367717.2| PREDICTED: 39S ribosomal protein L4, mitochondrial-like
[Monodelphis domestica]
Length = 293
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 115/188 (61%), Gaps = 2/188 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G L DVF V R DI+H V WQ ++ TKT +EV G G+KPWRQKG+GRAR
Sbjct: 78 GLADLHPDVFAVAPRLDILHDVAMWQKNFKRISYAKTKTRAEVRGGGRKPWRQKGSGRAR 137
Query: 172 HGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPS 230
HG++R P +RGG HGP+ P S+ L KVR LGLK+AL+ + + L + + LE+P+
Sbjct: 138 HGSIRSPIWRGGGVAHGPRGPTSYYYMLPMKVRVLGLKVALTVKLMQDDLHIVDSLELPT 197
Query: 231 HKTKFIVNYYNQMENTKKVLLCD-GGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDT 289
+++++ VLL D + + + A NL +N++P+VGLNV+S+L+H T
Sbjct: 198 SDPRYLLDLVRHRYWGDSVLLVDVDEEMPQNIVSAVSNLKTINLVPAVGLNVHSMLKHQT 257
Query: 290 LVMSRDAV 297
LV++ + V
Sbjct: 258 LVLTLNTV 265
>gi|310659501|ref|YP_003937222.1| 50S ribosomal subunit protein L4 [[Clostridium] sticklandii]
gi|308826279|emb|CBH22317.1| 50S ribosomal subunit protein L4 [[Clostridium] sticklandii]
Length = 207
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 77/199 (38%), Positives = 120/199 (60%), Gaps = 1/199 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N + + L+ +F I + ++ V++ LA R+QGT S KT +EV G G+K
Sbjct: 4 VDVLNINGQKVEELELSESIFAAEISEYAVYEVIKNHLANRRQGTQSAKTRAEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G+ R PQ+ GG + PKPR ++ +NKKVRRL LK L+ + EG L
Sbjct: 64 PWRQKGTGRARQGSTRSPQWIGGGVVFAPKPRDYSYSVNKKVRRLALKSVLTTKVNEGNL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + LE+ + KTK + + + KK L+ +K + +N+ V++ LN
Sbjct: 124 IVLDALEMNAPKTKDFIAMLSAVNAGKKALVVTSENSPNVVK-SGRNIPGVDITFVNTLN 182
Query: 281 VYSILQHDTLVMSRDAVNK 299
VY I++HD+L+++++AV K
Sbjct: 183 VYDIMRHDSLIITKEAVRK 201
>gi|373489047|ref|ZP_09579710.1| ribosomal protein L4/L1e [Holophaga foetida DSM 6591]
gi|372004523|gb|EHP05162.1| ribosomal protein L4/L1e [Holophaga foetida DSM 6591]
Length = 211
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 125/197 (63%), Gaps = 2/197 (1%)
Query: 102 PVTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
PV N N+ G + L +VF + I K +I VR AKR+QGT STK EVSG+G+K
Sbjct: 7 PVVNLENQAAGSVELLPEVFKLEDINKHLIWEAVRHFQAKRRQGTASTKDKWEVSGSGRK 66
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
W+QKGTGRAR G++R ++GG+T+HGP PR++ K+ RR ++ ALSA+ A G++
Sbjct: 67 LWKQKGTGRARIGSIRSALWKGGSTVHGPHPRNYDYAFPKRARRAAVRHALSAKFAAGEV 126
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
LV E+ +V +HKTK ++ ++ LL G EK+ LA N H + + S+G+N
Sbjct: 127 LVVENWDVETHKTKALIATLTKLGVNGSALLV-GAEASEKVALAAGNNHKLLAIESLGVN 185
Query: 281 VYSILQHDTLVMSRDAV 297
VY +L++D +V S+DA+
Sbjct: 186 VYDLLKYDQVVFSKDAI 202
>gi|295093644|emb|CBK82735.1| LSU ribosomal protein L4P [Coprococcus sp. ART55/1]
Length = 206
Score = 143 bits (361), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 74/181 (40%), Positives = 113/181 (62%), Gaps = 2/181 (1%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
VF V I + I+H+ V QLA +QGT S KT SEVSG G+KPWRQKGTG AR G+ R PQ
Sbjct: 23 VFGVEINEHIMHKAVVGQLANNRQGTQSAKTRSEVSGGGRKPWRQKGTGHARQGSTRSPQ 82
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
+ GG + PKPR +++K+NKK ++L +K ALS++ AE KL+V + L++ KT
Sbjct: 83 WTGGGVVFAPKPRDYSVKMNKKEKQLAMKSALSSKVAENKLVVVDKLDLQEAKTSVFAKI 142
Query: 240 YNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNK 299
++ K +++ + + L+ N+ V + L+VY IL+++ LV++++AV
Sbjct: 143 LAKLSAPKALVVTKDK--NNNVVLSANNIPTVKTTVANSLSVYDILKYEKLVLTKEAVAA 200
Query: 300 I 300
I
Sbjct: 201 I 201
>gi|222099968|ref|YP_002534536.1| 50S ribosomal protein L4 [Thermotoga neapolitana DSM 4359]
gi|254803761|sp|B9K887.1|RL4_THENN RecName: Full=50S ribosomal protein L4
gi|221572358|gb|ACM23170.1| 50S ribosomal protein L4 [Thermotoga neapolitana DSM 4359]
Length = 235
Score = 143 bits (361), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 88/220 (40%), Positives = 129/220 (58%), Gaps = 22/220 (10%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N E G + ++ VF++ D++ R V QL+ R+ GT STKT EVSG G+K
Sbjct: 4 VDLLNVKGEKVGTLEISDFVFNIDPNYDVMWRYVDMQLSNRRAGTASTKTRGEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW QK TGRARHG++R P +R G HGPKPR + KLNKK++RL L+ ALS + E KL
Sbjct: 64 PWPQKHTGRARHGSIRSPIWRHGGVAHGPKPRDWSKKLNKKMKRLALRSALSVKYRENKL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQME-NTKKVLLC----DGGCIHEKLKLATQNLHYVNVLP 275
LV EDL++ KTK + ++ KK L+ + G ++ +KL+ +NL V V+
Sbjct: 124 LVLEDLKLERPKTKSLKEILQNLDLADKKALIVLPWKEEGYVN--VKLSGKNLPNVKVII 181
Query: 276 S---------------VGLNVYSILQHDTLVMSRDAVNKI 300
+ GLNV+ +L++D L+++RD V KI
Sbjct: 182 ADNPNNSKNGEKAVRIDGLNVFDMLKYDYLILTRDMVAKI 221
>gi|199598833|ref|ZP_03212244.1| 50S ribosomal protein L4 [Lactobacillus rhamnosus HN001]
gi|258540678|ref|YP_003175177.1| 50S ribosomal protein L4 [Lactobacillus rhamnosus Lc 705]
gi|418072341|ref|ZP_12709613.1| 50S ribosomal protein L4 [Lactobacillus rhamnosus R0011]
gi|421770009|ref|ZP_16206712.1| LSU ribosomal protein L4p (L1e) [Lactobacillus rhamnosus LRHMDP2]
gi|421773264|ref|ZP_16209911.1| LSU ribosomal protein L4p (L1e) [Lactobacillus rhamnosus LRHMDP3]
gi|423078543|ref|ZP_17067223.1| 50S ribosomal protein L4 [Lactobacillus rhamnosus ATCC 21052]
gi|199590245|gb|EDY98340.1| 50S ribosomal protein L4 [Lactobacillus rhamnosus HN001]
gi|257152354|emb|CAR91326.1| LSU/50S ribosomal protein L4P [Lactobacillus rhamnosus Lc 705]
gi|357537592|gb|EHJ21616.1| 50S ribosomal protein L4 [Lactobacillus rhamnosus R0011]
gi|357550574|gb|EHJ32387.1| 50S ribosomal protein L4 [Lactobacillus rhamnosus ATCC 21052]
gi|411182170|gb|EKS49323.1| LSU ribosomal protein L4p (L1e) [Lactobacillus rhamnosus LRHMDP3]
gi|411183056|gb|EKS50197.1| LSU ribosomal protein L4p (L1e) [Lactobacillus rhamnosus LRHMDP2]
Length = 207
Score = 143 bits (361), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 118/193 (61%), Gaps = 5/193 (2%)
Query: 110 DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGR 169
+ G + L ++ V ++++ V Q A +QGTH+ K S VSG G+KPWRQKGTGR
Sbjct: 13 ENGTVELNDAIWAVEPNENVVFDAVVMQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTGR 72
Query: 170 ARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVP 229
AR G++R PQ+RGG + GP PRS+A KL KKVRRL +K LS + +G L+V + L
Sbjct: 73 ARQGSIRSPQWRGGGIVFGPTPRSYAYKLPKKVRRLAIKSVLSQKVLDGDLVVVDGLSFD 132
Query: 230 SHKTKFIVNYYNQMENTKK--VLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQH 287
+ KTK +N + ++ K V+L DG + K A +NL V V+P+ G+NV + +
Sbjct: 133 APKTKAFLNVLDGLKVNDKALVVLEDGNDVAAK---AARNLPNVKVVPAEGINVLDAVNY 189
Query: 288 DTLVMSRDAVNKI 300
L++++ A+ KI
Sbjct: 190 KKLILTQSALQKI 202
>gi|432842972|ref|XP_004065529.1| PREDICTED: 39S ribosomal protein L4, mitochondrial-like [Oryzias
latipes]
Length = 302
Score = 143 bits (361), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 121/198 (61%), Gaps = 2/198 (1%)
Query: 109 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTG 168
E G L DVF V R DI+H V +WQ ++ TK SEV G GKKPWRQKG+G
Sbjct: 84 EPLGRAELHPDVFGVSPRIDILHDVEKWQRNYKRISYAHTKVRSEVRGGGKKPWRQKGSG 143
Query: 169 RARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLE 227
RARHG++R P +RGG HGP+ P S+ L KVR GLK+ALS + A+ L V + L
Sbjct: 144 RARHGSIRSPLWRGGGVSHGPRGPTSYYYMLPMKVRVQGLKVALSFKMAQDYLHVVDSLH 203
Query: 228 VPSHKTKFIVNYYNQMENTKKVLLCD-GGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQ 286
+P+ ++++++ + + VL+ D E + A +L VN++P++GLNV+S+L+
Sbjct: 204 IPTPDSQYLLDLIRRRHWGESVLIVDVAEEFPENILQAASDLKKVNLIPAIGLNVHSMLK 263
Query: 287 HDTLVMSRDAVNKIVDRM 304
H+ +V++ + + + D++
Sbjct: 264 HEAVVLTLETLKFLEDKL 281
>gi|34811556|pdb|1PNU|C Chain C, Crystal Structure Of A Streptomycin Dependent Ribosome
From Escherichia Coli, 50s Subunit Of 70s Ribosome. This
File, 1pnu, Contains Only Molecules Of The 50s Ribosomal
Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site
Trna Are In The Pdb File 1pns.
gi|34811609|pdb|1PNY|C Chain C, Crystal Structure Of The Wild Type Ribosome From E. Coli,
50s Subunit Of 70s Ribosome. This File, 1pny, Contains
Only Molecules Of The 50s Ribosomal Subunit. The 30s
Subunit Is In The Pdb File 1pnx
Length = 197
Score = 143 bits (361), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 112/175 (64%), Gaps = 5/175 (2%)
Query: 125 IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGT 184
+ ++H VV WQLA R++GT ST+T ++VS TG+K + QKGTG ARHG P F GG
Sbjct: 21 VNSGVLHEVVTWQLASRRRGTASTRTRAQVSKTGRKMYGQKGTGNARHGDRSVPTFVGGG 80
Query: 185 TMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQ-- 242
GPKPRS+ L ++VR+LGL +A+++R GKL+ + ++ KTK +++ Q
Sbjct: 81 VAFGPKPRSYDYTLPRQVRQLGLAMAIASRQEGGKLVAVDGFDIADAKTKNFISWAKQNG 140
Query: 243 MENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAV 297
++ T+KVLL E + A +N+ +V+VLP G+NVY IL+HD LV+ A+
Sbjct: 141 LDGTEKVLLV---TDDENTRRAARNVSWVSVLPVAGVNVYDILRHDRLVIDAAAL 192
>gi|169830029|ref|YP_001700187.1| 50S ribosomal protein L4 [Lysinibacillus sphaericus C3-41]
gi|226730684|sp|B1HMX9.1|RL4_LYSSC RecName: Full=50S ribosomal protein L4
gi|168994517|gb|ACA42057.1| 50S ribosomal protein L4 [Lysinibacillus sphaericus C3-41]
Length = 207
Score = 143 bits (361), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 111/189 (58%), Gaps = 1/189 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +F + + ++ V Q A +QG H K SEV+G G+KPWRQKGTGRAR
Sbjct: 15 GEIELNDAIFGIEPNEAVLFDAVVAQRASLRQGNHKVKNRSEVAGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+RGG + GP PRS++ KL KKVRRL LK ALSA+ E LV + L + +
Sbjct: 75 QGSIRSPQWRGGGIVFGPTPRSYSYKLPKKVRRLALKSALSAKVVEQNFLVLDALTLAAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KTK + KK L + E + L+ +N+ V VL + G+NV +L H+ +V
Sbjct: 135 KTKEFTKILKDLSLEKKSLFVTAD-LDENVALSARNIPGVTVLTANGINVLDLLGHEKVV 193
Query: 292 MSRDAVNKI 300
++ AV K+
Sbjct: 194 FTKSAVEKV 202
>gi|56966348|pdb|1VOR|F Chain F, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
gi|56966401|pdb|1VOU|F Chain F, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
gi|56966454|pdb|1VOW|F Chain F, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
gi|56966507|pdb|1VOY|F Chain F, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
gi|56966560|pdb|1VP0|F Chain F, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400
Length = 198
Score = 143 bits (361), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 112/175 (64%), Gaps = 5/175 (2%)
Query: 125 IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGT 184
+ ++H VV WQLA R++GT ST+T ++VS TG+K + QKGTG ARHG P F GG
Sbjct: 22 VNSGVLHEVVTWQLASRRRGTASTRTRAQVSKTGRKMYGQKGTGNARHGDRSVPTFVGGG 81
Query: 185 TMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQ-- 242
GPKPRS+ L ++VR+LGL +A+++R GKL+ + ++ KTK +++ Q
Sbjct: 82 VAFGPKPRSYDYTLPRQVRQLGLAMAIASRQEGGKLVAVDGFDIADAKTKNFISWAKQNG 141
Query: 243 MENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAV 297
++ T+KVLL E + A +N+ +V+VLP G+NVY IL+HD LV+ A+
Sbjct: 142 LDGTEKVLLV---TDDENTRRAARNVSWVSVLPVAGVNVYDILRHDRLVIDAAAL 193
>gi|339445914|ref|YP_004711918.1| hypothetical protein EGYY_24480 [Eggerthella sp. YY7918]
gi|338905666|dbj|BAK45517.1| hypothetical protein EGYY_24480 [Eggerthella sp. YY7918]
Length = 207
Score = 143 bits (361), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 122/202 (60%), Gaps = 5/202 (2%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I + + + G + LA VF + ++H VVR Q A +QGTH TKT +VSG GKK
Sbjct: 4 IEIKDASGKKAGSVDLAPSVFGIEPNVPVMHTVVRSQRAAWRQGTHDTKTRGQVSGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR GT+R PQ+ GG T+ GP PRS+A ++NKK +L ++ ALSA+ A+G+L
Sbjct: 64 PWRQKGTGRARQGTIRAPQWAGGGTVFGPHPRSYAFRVNKKEVKLAMRSALSAKLADGEL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLK--LATQNLHYVNVLPSVG 278
V E+ + +TK + + +V L G E + L+ +N+ VN++P
Sbjct: 124 TVVENFKFEKPRTKDAMTALKALGLEGRVTLVIG---DEDVNTYLSFRNIPKVNIIPVSE 180
Query: 279 LNVYSILQHDTLVMSRDAVNKI 300
+N Y ++ + LV++ +A+ +I
Sbjct: 181 INTYELIDNKNLVVTAEALKRI 202
>gi|15805341|ref|NP_294035.1| 50S ribosomal protein L4 [Deinococcus radiodurans R1]
gi|45477175|sp|Q9RXK1.3|RL4_DEIRA RecName: Full=50S ribosomal protein L4
gi|16975049|pdb|1JZX|K Chain K, Structural Basis For The Interaction Of Antibiotics With
The Peptidyl Transferase Center In Eubacteria
gi|16975053|pdb|1JZY|K Chain K, Structural Basis For The Interaction Of Antibiotics With
The Peptidyl Transferase Center In Eubacteria
gi|16975057|pdb|1JZZ|K Chain K, Structural Basis For The Interaction Of Antibiotics With
The Peptidyl Transferase Center In Eubacteria
gi|16975065|pdb|1K01|K Chain K, Structural Basis For The Interaction Of Antibiotics With
The Peptidyl Transferase Center In Eubacteria
gi|20150343|pdb|1J5A|K Chain K, Structural Basis For The Interaction Of Antibiotics With
The Peptidyl Transferase Center In Eubacteria
gi|28948922|pdb|1NKW|C Chain C, Crystal Structure Of The Large Ribosomal Subunit From
Deinococcus Radiodurans
gi|51247375|pdb|1SM1|C Chain C, Complex Of The Large Ribosomal Subunit From Deinococcus
Radiodurans With Quinupristin And Dalfopristin
gi|190613492|pdb|2ZJP|C Chain C, Thiopeptide Antibiotic Nosiheptide Bound To The Large
Ribosomal Subunit Of Deinococcus Radiodurans
gi|190613522|pdb|2ZJQ|C Chain C, Interaction Of L7 With L11 Induced By Microccocin Binding
To The Deinococcus Radiodurans 50s Subunit
gi|190613553|pdb|2ZJR|C Chain C, Refined Native Structure Of The Large Ribosomal Subunit
(50s) From Deinococcus Radiodurans
gi|190613660|pdb|3CF5|C Chain C, Thiopeptide Antibiotic Thiostrepton Bound To The Large
Ribosomal Subunit Of Deinococcus Radiodurans
gi|203282459|pdb|3DLL|C Chain C, The Oxazolidinone Antibiotics Perturb The Ribosomal
Peptidyl-Transferase Center And Effect Trna Positioning
gi|323714543|pdb|3PIO|C Chain C, Crystal Structure Of The Synergistic Antibiotic Pair
Lankamycin And Lankacidin In Complex With The Large
Ribosomal Subunit
gi|323714573|pdb|3PIP|C Chain C, Crystal Structure Of The Synergistic Antibiotic Pair
Lankamycin And Lankacidin In Complex With The Large
Ribosomal Subunit
gi|6457986|gb|AAF09893.1|AE001892_4 ribosomal protein L4 [Deinococcus radiodurans R1]
Length = 205
Score = 143 bits (361), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 77/186 (41%), Positives = 116/186 (62%), Gaps = 8/186 (4%)
Query: 117 AGDVFDVP---IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHG 173
G ++P + ++H VV WQLA R++GT ST+T ++VS TG+K + QKGTG ARHG
Sbjct: 11 GGRTIELPLPEVNSGVLHEVVTWQLASRRRGTASTRTRAQVSKTGRKMYGQKGTGNARHG 70
Query: 174 TLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKT 233
P F GG GPKPRS+ L ++VR+LGL +A+++R GKL+ + ++ KT
Sbjct: 71 DRSVPTFVGGGVAFGPKPRSYDYTLPRQVRQLGLAMAIASRQEGGKLVAVDGFDIADAKT 130
Query: 234 KFIVNYYNQ--MENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
K +++ Q ++ T+KVLL E + A +N+ +V+VLP G+NVY IL+HD LV
Sbjct: 131 KNFISWAKQNGLDGTEKVLLV---TDDENTRRAARNVSWVSVLPVAGVNVYDILRHDRLV 187
Query: 292 MSRDAV 297
+ A+
Sbjct: 188 IDAAAL 193
>gi|325663061|ref|ZP_08151511.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 4_1_37FAA]
gi|331086668|ref|ZP_08335745.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 9_1_43BFAA]
gi|325470515|gb|EGC73745.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 4_1_37FAA]
gi|330409834|gb|EGG89269.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 9_1_43BFAA]
Length = 206
Score = 143 bits (361), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 119/200 (59%), Gaps = 2/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G + L+ VF V + + ++H V QLA ++QGT KT SEV G G+K
Sbjct: 4 VSVYNIEGKEVGTIDLSDAVFGVEVNEHLLHMAVVSQLANKRQGTQKAKTRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ GG + P PR ++ KLNKK +R LK AL++R E K
Sbjct: 64 PWRQKGTGHARQGSTRAPQWTGGGVVFAPTPRDYSFKLNKKEKRAALKSALTSRVEEKKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V +++ KTK N N + K +++ + G ++ +L+ +N+ V + +N
Sbjct: 124 IVLDEINFGEIKTKNFQNVLNNLNVAKALVVLEDG--NKNAELSARNIPSVKTARTNTIN 181
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY IL+++T++ ++ AV I
Sbjct: 182 VYDILKYNTVIATKAAVETI 201
>gi|238916266|ref|YP_002929783.1| 50S ribosomal protein L4 [Eubacterium eligens ATCC 27750]
gi|259491557|sp|C4Z2T1.1|RL4_EUBE2 RecName: Full=50S ribosomal protein L4
gi|238871626|gb|ACR71336.1| large subunit ribosomal protein L4 [Eubacterium eligens ATCC 27750]
Length = 206
Score = 143 bits (361), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 123/200 (61%), Gaps = 2/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G + L VF V + + ++H V QLA +QGT S KT SEVSG G+K
Sbjct: 4 VSVYNIEGKEVGSIELNDAVFGVEVNEHLVHMAVVNQLANNRQGTQSAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ GG + PKPR ++ K+NKK +R+ L ALS++ A+ K+
Sbjct: 64 PWRQKGTGHARQGSTRSPQWTGGGVVFAPKPRDYSFKMNKKEKRIALLSALSSKVADNKI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + + KTK + ++ K +++ +G ++ + L+ +N+ V V + +N
Sbjct: 124 VVLDAFNLDEIKTKKFAEVMSNLKVDKALVVIEGE--NKNVVLSGRNIPTVKVSATNEIN 181
Query: 281 VYSILQHDTLVMSRDAVNKI 300
Y +L+++TLV+++ AV K+
Sbjct: 182 TYDVLKYETLVVTKAAVEKL 201
>gi|366163748|ref|ZP_09463503.1| 50S ribosomal protein L4 [Acetivibrio cellulolyticus CD2]
Length = 207
Score = 143 bits (361), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 119/195 (61%), Gaps = 13/195 (6%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ VF + + K+++H+ V QLA ++QGT STKT SEV G G KPW+QKGTGRAR
Sbjct: 15 GDIDLSEAVFGIDVNKEVVHQAVVNQLANKRQGTQSTKTKSEVRGGGIKPWKQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R Q+ G + GPKPRS+ L KKV+RL LK LS++ +E +++V + L
Sbjct: 75 QGSIRSAQWIKGGIVLGPKPRSYRYTLPKKVKRLALKSVLSSKVSENEIIVLDKLNFDKI 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCI------HEKLKLATQNLHYVNVLPSVGLNVYSIL 285
KTK QM K L DG + +E ++ + N+ V L + +NVY I+
Sbjct: 135 KTK-------QMAEVLKNLKIDGTAVILIADKNENVERSANNIPGVKTLLANTINVYDIV 187
Query: 286 QHDTLVMSRDAVNKI 300
+H L++++DAV+K+
Sbjct: 188 KHSKLIITKDAVSKV 202
>gi|29726790|pdb|1NWX|C Chain C, Complex Of The Large Ribosomal Subunit From Deinococcus
Radiodurans With Abt-773
gi|29726821|pdb|1NWY|C Chain C, Complex Of The Large Ribosomal Subunit From Deinococcus
Radiodurans With Azithromycin
gi|61680338|pdb|1XBP|C Chain C, Inhibition Of Peptide Bond Formation By Pleuromutilins:
The Structure Of The 50s Ribosomal Subunit From
Deinococcus Radiodurans In Complex With Tiamulin
Length = 204
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 112/175 (64%), Gaps = 5/175 (2%)
Query: 125 IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGT 184
+ ++H VV WQLA R++GT ST+T ++VS TG+K + QKGTG ARHG P F GG
Sbjct: 21 VNSGVLHEVVTWQLASRRRGTASTRTRAQVSKTGRKMYGQKGTGNARHGDRSVPTFVGGG 80
Query: 185 TMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQ-- 242
GPKPRS+ L ++VR+LGL +A+++R GKL+ + ++ KTK +++ Q
Sbjct: 81 VAFGPKPRSYDYTLPRQVRQLGLAMAIASRQEGGKLVAVDGFDIADAKTKNFISWAKQNG 140
Query: 243 MENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAV 297
++ T+KVLL E + A +N+ +V+VLP G+NVY IL+HD LV+ A+
Sbjct: 141 LDGTEKVLLV---TDDENTRRAARNVSWVSVLPVAGVNVYDILRHDRLVIDAAAL 192
>gi|258509481|ref|YP_003172232.1| 50S ribosomal protein L4 [Lactobacillus rhamnosus GG]
gi|385829115|ref|YP_005866887.1| 50S ribosomal protein L4 [Lactobacillus rhamnosus GG]
gi|257149408|emb|CAR88381.1| LSU/50S ribosomal protein L4P [Lactobacillus rhamnosus GG]
gi|259650760|dbj|BAI42922.1| 50S ribosomal protein L4 [Lactobacillus rhamnosus GG]
Length = 207
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 118/193 (61%), Gaps = 5/193 (2%)
Query: 110 DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGR 169
+ G + L ++ V ++++ V Q A +QGTH+ K S VSG G+KPWRQKGTGR
Sbjct: 13 ENGTVELNDAIWAVEPNENVVFDAVVMQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTGR 72
Query: 170 ARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVP 229
AR G++R PQ+RGG + GP PRS+A KL KKVRRL +K LS + +G L+V + L
Sbjct: 73 ARQGSIRSPQWRGGGIVFGPTPRSYAYKLPKKVRRLAIKSVLSQKVLDGDLVVVDGLSFD 132
Query: 230 SHKTKFIVNYYNQMENTKK--VLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQH 287
+ KTK +N + ++ K V+L DG + K A +NL V V+P+ G+NV + +
Sbjct: 133 APKTKAFLNVLDGIKVNDKALVVLEDGNDVAAK---AARNLPNVKVVPAEGINVLDAVNY 189
Query: 288 DTLVMSRDAVNKI 300
L++++ A+ KI
Sbjct: 190 KKLILTQSALQKI 202
>gi|255659504|ref|ZP_05404913.1| ribosomal protein L4/L1 family protein [Mitsuokella multacida DSM
20544]
gi|260848056|gb|EEX68063.1| ribosomal protein L4/L1 family protein [Mitsuokella multacida DSM
20544]
Length = 207
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 114/200 (57%), Gaps = 1/200 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + N G + L +F V + ++H+ V QLA ++ GTH+TKT V G G+K
Sbjct: 4 VAVYDITNNQVGDIELNDSIFGVEMNAGLLHQAVVMQLAAQRLGTHATKTRGFVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G+ R P + GG T+ GP PR +A + +K RRL LK ALS + G L
Sbjct: 64 PWKQKGTGRARAGSTRSPLWVGGGTVFGPHPRKYAFSMPRKQRRLALKCALSDKVKSGDL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V E L+ + KTK +V K L E ++ + +N+ + ++GLN
Sbjct: 124 IVLESLDFDAPKTKQVVKMLGDFGVDSKALFITADEA-ENVEKSARNIPGAKAIQALGLN 182
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY IL HD L +++DA+ +I
Sbjct: 183 VYDILHHDKLFITKDAITRI 202
>gi|329768274|ref|ZP_08259775.1| 50S ribosomal protein L4 [Gemella haemolysans M341]
gi|328837473|gb|EGF87102.1| 50S ribosomal protein L4 [Gemella haemolysans M341]
Length = 207
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 119/203 (58%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + F +D G + + VF + + ++ + V Q A +QGTH TK SEVSG
Sbjct: 1 MPQLDLFKQDGTKVGAVEASEAVFGIEPNQHVLFQAVTLQRASLRQGTHKTKGRSEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ K+ +K+RRL L+ ALS++ A
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSFKMPRKMRRLALRSALSSKVAA 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++ E L + KTK + + KKVL + E L+ +N+ V + +
Sbjct: 121 NEVFALESLSFDTIKTKNFKEMLSNLSLEKKVLFVV-TELEENTVLSGRNIPGVEFVETT 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
GLNV IL + +V ++DAV K+
Sbjct: 180 GLNVLDILGSNKVVFTKDAVEKV 202
>gi|365128104|ref|ZP_09340420.1| 50S ribosomal protein L4 [Subdoligranulum sp. 4_3_54A2FAA]
gi|363623451|gb|EHL74570.1| 50S ribosomal protein L4 [Subdoligranulum sp. 4_3_54A2FAA]
Length = 207
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 110/185 (59%), Gaps = 1/185 (0%)
Query: 116 LAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTL 175
L+ VF + + ++H V LA ++QGT STKT SEVSG G+KPWRQKGTGRAR G+
Sbjct: 19 LSDAVFGITPNEKVMHAAVVNFLANQRQGTQSTKTRSEVSGGGRKPWRQKGTGRARQGST 78
Query: 176 RGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKF 235
R PQ+ G GPKPR ++ +LNKKV+RL L ALS++A G ++V ++L+ +KTK
Sbjct: 79 RSPQWTHGGVALGPKPRDYSYRLNKKVKRLALLSALSSKAQSGDIIVIDELKAAEYKTKT 138
Query: 236 IVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRD 295
+VN + KK L+ + KL + N+ V + +N Y +L V+S D
Sbjct: 139 VVNMLTAIGADKKALIVT-PAVDAKLVKSAANIPGVKTATADSINTYEVLNGGKFVISVD 197
Query: 296 AVNKI 300
A K+
Sbjct: 198 AAKKL 202
>gi|313891529|ref|ZP_07825139.1| 50S ribosomal protein L4 [Dialister microaerophilus UPII 345-E]
gi|313119988|gb|EFR43170.1| 50S ribosomal protein L4 [Dialister microaerophilus UPII 345-E]
Length = 207
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 118/202 (58%), Gaps = 1/202 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N + G + L +F V + +IH+ V Q A + GTH+TKT V G GKK
Sbjct: 4 VTLYNIAGQAAGEVELNDSIFGVEYNEAVIHQAVVRQQANERLGTHATKTRGLVRGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R P + GG T+ GP PRSHA + KK RRL +K ALS + +L
Sbjct: 64 PWRQKGTGRARVGSIRSPLWVGGGTVFGPTPRSHAKGMTKKARRLAVKSALSEKLRANEL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + + + KTK +V E + K L+ DGG E L+ +N+ V + + G+N
Sbjct: 124 IVIDQINFEAPKTKQVVEMMKAFEAS-KALIIDGGKAVENTVLSARNIPGVKAIGTCGIN 182
Query: 281 VYSILQHDTLVMSRDAVNKIVD 302
+Y ++ + L ++++AV +I +
Sbjct: 183 IYDLVHYTKLFITQEAVKQIEE 204
>gi|392961451|ref|ZP_10326909.1| ribosomal protein L4/L1e [Pelosinus fermentans DSM 17108]
gi|421056311|ref|ZP_15519238.1| ribosomal protein L4/L1e [Pelosinus fermentans B4]
gi|421058315|ref|ZP_15521027.1| ribosomal protein L4/L1e [Pelosinus fermentans B3]
gi|421064621|ref|ZP_15526482.1| ribosomal protein L4/L1e [Pelosinus fermentans A12]
gi|421072710|ref|ZP_15533814.1| ribosomal protein L4/L1e [Pelosinus fermentans A11]
gi|392438727|gb|EIW16550.1| ribosomal protein L4/L1e [Pelosinus fermentans B4]
gi|392445137|gb|EIW22469.1| ribosomal protein L4/L1e [Pelosinus fermentans A11]
gi|392453708|gb|EIW30571.1| ribosomal protein L4/L1e [Pelosinus fermentans DSM 17108]
gi|392460781|gb|EIW37043.1| ribosomal protein L4/L1e [Pelosinus fermentans A12]
gi|392461124|gb|EIW37352.1| ribosomal protein L4/L1e [Pelosinus fermentans B3]
Length = 209
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 122/201 (60%), Gaps = 1/201 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + G + L VF V + + ++H+ V QLA ++ GT STKT V G G+K
Sbjct: 4 VAVYDITGAKTGELELNDSVFGVEVNEAVLHQAVVMQLASQRLGTASTKTRGLVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G+ R P + GG T GP+PRS+A ++ +K RRL +K AL+A+ +G+L
Sbjct: 64 PWKQKGTGRARAGSTRSPIWVGGGTTFGPQPRSYAFRMPRKQRRLAIKSALTAKLQDGEL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP-SVGL 279
+V + + + KTK ++N + + K L G + E ++ + +N+ V +P S L
Sbjct: 124 VVVDSIAFDAPKTKNVINMLSGFDAANKKSLIITGEVIENVEKSARNIPGVKAIPASSSL 183
Query: 280 NVYSILQHDTLVMSRDAVNKI 300
NVY +L HD + ++++A+ +I
Sbjct: 184 NVYDLLYHDKVFVTKEAITRI 204
>gi|150015044|ref|YP_001307298.1| 50S ribosomal protein L4 [Clostridium beijerinckii NCIMB 8052]
gi|189029495|sp|A6LPR2.1|RL4_CLOB8 RecName: Full=50S ribosomal protein L4
gi|149901509|gb|ABR32342.1| ribosomal protein L4/L1e [Clostridium beijerinckii NCIMB 8052]
Length = 206
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 126/203 (62%), Gaps = 5/203 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN++ M L +VF I + +H+VV LA ++QGT STKT SEV G
Sbjct: 1 MPTVGVFNKEGNKVADMELNENVFAAEINEYALHQVVVALLANKRQGTQSTKTRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G KPWRQKGTGRAR G++R PQ+ G + PKPR + + + K +R++ +K AL+++ +
Sbjct: 61 GIKPWRQKGTGRARQGSIRSPQWIKGGIVFAPKPRDYRVSVPKSMRKVAMKSALTSKVQD 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+++V + L + KTK ++ +E K +++ +E + + +N+ ++V+P+
Sbjct: 121 NQMIVLDSLNFEAPKTKSMIEMLKALEANKALIITAES--NEVVYKSARNIQGISVIPAN 178
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
+NVY +L+++ L++++DAV+KI
Sbjct: 179 NINVYDLLKYEKLIITKDAVSKI 201
>gi|403296178|ref|XP_003938995.1| PREDICTED: 39S ribosomal protein L4, mitochondrial [Saimiri
boliviensis boliviensis]
Length = 294
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 121/213 (56%), Gaps = 7/213 (3%)
Query: 97 QDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSG 156
Q V + F E G L DVF R DI+H+V WQ ++ TKT +EV G
Sbjct: 63 QAWVESLRGFEQERVGLADLHPDVFATAPRLDILHQVAVWQKNFKRISYAKTKTRAEVRG 122
Query: 157 TGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARA 215
G+KPW QKG+GRARHG++R P +RGG HGP+ P S+ L KVR LGLK+AL+ +
Sbjct: 123 GGRKPWPQKGSGRARHGSIRSPIWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKL 182
Query: 216 AEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKL----ATQNLHYV 271
A+ L + + LE+P+ +++ + VLL + HE++ AT L
Sbjct: 183 AQDDLHIVDSLELPTPDPQYLTDLACYRRWGDSVLLVN--LTHEEMPQNIVEATSRLKTF 240
Query: 272 NVLPSVGLNVYSILQHDTLVMSRDAVNKIVDRM 304
++P+VGLNVYS+L+H TLV++ + + D++
Sbjct: 241 TLIPAVGLNVYSMLKHQTLVLTLPTIAFLEDKL 273
>gi|295425651|ref|ZP_06818338.1| ribosomal protein L4/L1 family protein [Lactobacillus amylolyticus
DSM 11664]
gi|295064667|gb|EFG55588.1| ribosomal protein L4/L1 family protein [Lactobacillus amylolyticus
DSM 11664]
Length = 205
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 76/192 (39%), Positives = 116/192 (60%), Gaps = 3/192 (1%)
Query: 109 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTG 168
+D G + L VF + + ++ + Q A ++QGT K S V G GKKPWRQKGTG
Sbjct: 12 KDSGEVTLNDKVFGIEPNESVVFEAIIRQRAGQRQGTSKVKNRSAVRGGGKKPWRQKGTG 71
Query: 169 RARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEV 228
RAR G++R PQ+RGG T+ GP PRS+A + +K RRL +K LS + + L+V + L +
Sbjct: 72 RARQGSIRAPQWRGGGTVFGPTPRSYAYSMPRKQRRLAIKSVLSQKLIDKNLIVLDKLTM 131
Query: 229 PSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHD 288
+ KTK V+ + ++ KVL+ + ++L+ +NL V V+P GLNV + +D
Sbjct: 132 SAPKTKEFVSILDSLKVESKVLVVSD---DKNVQLSAKNLPKVKVVPVNGLNVEDAVNYD 188
Query: 289 TLVMSRDAVNKI 300
L++++DAV KI
Sbjct: 189 KLILTQDAVKKI 200
>gi|229552709|ref|ZP_04441434.1| ribosomal protein L4 [Lactobacillus rhamnosus LMS2-1]
gi|385836316|ref|YP_005874091.1| 50S ribosomal protein L4 [Lactobacillus rhamnosus ATCC 8530]
gi|229313915|gb|EEN79888.1| ribosomal protein L4 [Lactobacillus rhamnosus LMS2-1]
gi|355395808|gb|AER65238.1| 50S ribosomal protein L4 [Lactobacillus rhamnosus ATCC 8530]
Length = 207
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 117/193 (60%), Gaps = 5/193 (2%)
Query: 110 DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGR 169
+ G + L ++ V ++++ V Q A +QGTH+ K S VSG G+KPWRQKGTGR
Sbjct: 13 ENGTVELNDAIWAVEPNENVVFDAVVMQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTGR 72
Query: 170 ARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVP 229
AR G++R PQ+RGG + GP PRS+A KL KKVRRL +K LS + +G L+V + L
Sbjct: 73 ARQGSIRSPQWRGGGIVFGPTPRSYAYKLPKKVRRLAIKSVLSQKVLDGDLVVVDGLSFD 132
Query: 230 SHKTKFIVNYYNQMENTKK--VLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQH 287
KTK +N + ++ K V+L DG + K A +NL V V+P+ G+NV + +
Sbjct: 133 DPKTKAFLNVLDGLKVNDKALVVLEDGNDVAAK---AARNLPNVKVVPAEGINVLDAVNY 189
Query: 288 DTLVMSRDAVNKI 300
L++++ A+ KI
Sbjct: 190 KKLILTQSALQKI 202
>gi|383818613|ref|ZP_09973899.1| 50S ribosomal protein L4 [Mycobacterium phlei RIVM601174]
gi|383338469|gb|EID16833.1| 50S ribosomal protein L4 [Mycobacterium phlei RIVM601174]
Length = 217
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/205 (41%), Positives = 122/205 (59%), Gaps = 2/205 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
L I V + G + L ++FDV ++H+VV QLA +QGTHSTKT EVSG G
Sbjct: 3 LKIDVHTPAGKKDGSVELPAELFDVEANIALMHQVVTAQLAAARQGTHSTKTRGEVSGGG 62
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KKP+RQKGTGRAR G+ R PQF GG T+HGPKPR ++ + KK+ R L+ ALS RA G
Sbjct: 63 KKPYRQKGTGRARQGSTRAPQFTGGGTVHGPKPRDYSERTPKKMIRAALRGALSDRARNG 122
Query: 219 KL-LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++ V E +E + TK + + + + KVL+ G K + +NL V+V+
Sbjct: 123 RIHAVTELVEGQTPSTKSAKAFLSTLTDRPKVLVVIGRADETGAK-SVRNLPGVHVIAPD 181
Query: 278 GLNVYSILQHDTLVMSRDAVNKIVD 302
LN Y +L+ D +V S +A+N ++
Sbjct: 182 QLNTYDVLKADDVVFSVEALNSYIE 206
>gi|58336631|ref|YP_193216.1| 50S ribosomal protein L4 [Lactobacillus acidophilus NCFM]
gi|227903188|ref|ZP_04020993.1| 50S ribosomal protein L4 [Lactobacillus acidophilus ATCC 4796]
gi|75433039|sp|Q5FM89.1|RL4_LACAC RecName: Full=50S ribosomal protein L4
gi|58253948|gb|AAV42185.1| 50S ribosomal protein L4 [Lactobacillus acidophilus NCFM]
gi|227868993|gb|EEJ76414.1| 50S ribosomal protein L4 [Lactobacillus acidophilus ATCC 4796]
Length = 205
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 76/192 (39%), Positives = 114/192 (59%), Gaps = 3/192 (1%)
Query: 109 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTG 168
+D G + L VF + +++ + Q A ++QGT K S V G GKKPWRQKGTG
Sbjct: 12 KDSGEVTLNDKVFGIEPNDNVVFEAIIRQRAGKRQGTSKVKNRSAVRGGGKKPWRQKGTG 71
Query: 169 RARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEV 228
RAR G++R PQ+RGG T+ GP PRS+A + +K RRL +K LS + + L+V + L +
Sbjct: 72 RARQGSIRAPQWRGGGTVFGPTPRSYAYTMPRKQRRLAIKSVLSQKLIDNDLIVLDKLTM 131
Query: 229 PSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHD 288
+ KTK +V+ N + KVL+ ++L+ +NL V V+P GLNV + +
Sbjct: 132 SAPKTKELVSMLNSLNADGKVLIV---SDDNNVQLSARNLAKVKVVPVNGLNVEDAVNYG 188
Query: 289 TLVMSRDAVNKI 300
L++++DAV KI
Sbjct: 189 KLILTQDAVKKI 200
>gi|195579557|ref|XP_002079628.1| GD21919 [Drosophila simulans]
gi|194191637|gb|EDX05213.1| GD21919 [Drosophila simulans]
Length = 296
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 115/201 (57%), Gaps = 2/201 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L DVF R DII V WQ R TKT +EV G G+KPW QKG GRAR
Sbjct: 81 GLIELHPDVFAAQPRVDIIQENVEWQRKYRYVSMAHTKTRAEVRGGGRKPWPQKGGGRAR 140
Query: 172 HGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPS 230
HG+LR P +GG +HGP+ P +H L R LGL LS + A+ L + E++++P+
Sbjct: 141 HGSLRSPMLKGGGVVHGPRSPTTHFYMLPFYKRVLGLTSTLSVKLAQDDLHIIENVDIPT 200
Query: 231 HKTKFIVNYYNQMENTKKVLLCDGGCIH-EKLKLATQNLHYVNVLPSVGLNVYSILQHDT 289
+F+ + + VL+ D + + A+ +L YVN++P+ GLNVYS+L+HDT
Sbjct: 201 GDAEFLKDLIAERNWGPSVLIVDEDHMFPANICQASDDLGYVNLMPTFGLNVYSMLKHDT 260
Query: 290 LVMSRDAVNKIVDRMHTPINR 310
LV++ AV + R+ +NR
Sbjct: 261 LVLTVAAVKHLEQRLLYQLNR 281
>gi|344282767|ref|XP_003413144.1| PREDICTED: 39S ribosomal protein L4, mitochondrial-like [Loxodonta
africana]
Length = 294
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 122/213 (57%), Gaps = 7/213 (3%)
Query: 97 QDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSG 156
Q V + F E G L DVF R DI+H+V WQ ++ TKT +EV G
Sbjct: 63 QAWVESLRGFDQERVGLAELHPDVFAAAPRLDILHQVAIWQKNFKRISYAKTKTRAEVRG 122
Query: 157 TGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARA 215
G+KPW QKG GRARHG++R P +RGG HGP+ P S+ L KVR LGLK+AL+ +
Sbjct: 123 GGRKPWPQKGCGRARHGSIRSPIWRGGGIAHGPRGPTSYYYMLPMKVRVLGLKVALTVKL 182
Query: 216 AEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKL----ATQNLHYV 271
A+ L + + LE+P+ ++++ VLL D HE++ +T L
Sbjct: 183 AQDNLHIVDSLELPTPDSQYLTELAQYRRWGDSVLLVD--LAHEEMPQNVVSSTSGLKTF 240
Query: 272 NVLPSVGLNVYSILQHDTLVMSRDAVNKIVDRM 304
N++P+VGLNV+S+L+H TLV++ V+ + +++
Sbjct: 241 NLIPAVGLNVHSMLKHQTLVLTLRTVDFLEEKL 273
>gi|241889133|ref|ZP_04776437.1| ribosomal protein, L4/L1 family [Gemella haemolysans ATCC 10379]
gi|241864382|gb|EER68760.1| ribosomal protein, L4/L1 family [Gemella haemolysans ATCC 10379]
Length = 207
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 119/203 (58%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + F +D G + VF + + ++ + V Q A +QGTH TK SEVSG
Sbjct: 1 MPQLDLFKQDGTKVGAVEANEAVFGIEPNQHVLFQAVTLQRASLRQGTHKTKGRSEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ K+ +K+RRL L+ ALS++ A
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSFKMPRKMRRLALRSALSSKVAA 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++ E L + KTK + + KKVL + E L+ +N+ V + +
Sbjct: 121 NEVFALESLSFDTIKTKNFKEMLSNLSLEKKVLFVV-TELEENTVLSGRNIPGVEFVETT 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
GLNV IL+ + +V ++DAV K+
Sbjct: 180 GLNVLDILRSNKVVFTKDAVEKV 202
>gi|336436040|ref|ZP_08615753.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 1_4_56FAA]
gi|336008080|gb|EGN38099.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 1_4_56FAA]
Length = 206
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 120/200 (60%), Gaps = 2/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G + L VF V + + ++H V QLA ++QGT KT SEVSG G+K
Sbjct: 4 VSVYNIEGKEVGTIDLNDAVFGVEVNEHLVHMAVVSQLANKRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ GG + P PR ++ K+NKK +R LK ALS+R AE K
Sbjct: 64 PWRQKGTGHARQGSTRAPQWTGGGVVFAPVPRDYSFKMNKKEKRAALKSALSSRVAENKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V ++++ KTK N + K +++ + G + ++++ +N+ V + +N
Sbjct: 124 IVVDEIKFDEIKTKKFQEVLNNLNVNKALVVLEDGNTN--VEISARNIANVKTARTNTIN 181
Query: 281 VYSILQHDTLVMSRDAVNKI 300
V+ IL+++T++ ++ AV I
Sbjct: 182 VFDILKYNTVIATKAAVATI 201
>gi|421078694|ref|ZP_15539644.1| ribosomal protein L4/L1e [Pelosinus fermentans JBW45]
gi|392523170|gb|EIW46346.1| ribosomal protein L4/L1e [Pelosinus fermentans JBW45]
Length = 209
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 122/201 (60%), Gaps = 1/201 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + G + L VF V + + ++H+ V QLA ++ GT STKT V G G+K
Sbjct: 4 VAVYDITGAKTGELELNDSVFGVEVNEAVLHQAVVMQLASQRLGTASTKTRGLVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G+ R P + GG T GP+PRS+A ++ +K RRL +K AL+A+ +G+L
Sbjct: 64 PWKQKGTGRARAGSTRSPIWVGGGTTFGPQPRSYAFRMPRKQRRLAIKSALTAKLQDGEL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP-SVGL 279
+V + + + KTK ++N + + K L G + E ++ + +N+ V +P S L
Sbjct: 124 VVVDSITFDAPKTKNVINMLSGFDAANKKSLIITGEVVENVEKSARNIPGVKAIPASSSL 183
Query: 280 NVYSILQHDTLVMSRDAVNKI 300
NVY +L HD + ++++A+ +I
Sbjct: 184 NVYDLLYHDKVFVTKEAITRI 204
>gi|428162639|gb|EKX31763.1| hypothetical protein GUITHDRAFT_166830 [Guillardia theta CCMP2712]
Length = 340
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/187 (42%), Positives = 109/187 (58%), Gaps = 1/187 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G LA VF P+R DI++RVV WQ A + K + VSG GKKPW QK TGRAR
Sbjct: 93 GTCQLASAVFQEPLRVDILNRVVLWQRAGWRTIARIAKNRNMVSGGGKKPWAQKKTGRAR 152
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R P FR G HGP RS AI + KKVRRLG+++A+S+R EGK+ + E ++ S
Sbjct: 153 QGSIRAPHFRHGGKAHGPVQRSFAIDMPKKVRRLGVRVAMSSRMREGKVWIVESEKLSSS 212
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KT+ Q L G + LAT NL + +P+ +VY+IL+H LV
Sbjct: 213 KTRHAAAVARQW-GWDSCLFITGSSPDKNFDLATGNLPNLRAIPAHKTSVYTILKHKQLV 271
Query: 292 MSRDAVN 298
++++AV+
Sbjct: 272 ITKEAVD 278
>gi|406837803|ref|ZP_11097397.1| 50S ribosomal protein L4 [Lactobacillus vini DSM 20605]
Length = 207
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/205 (38%), Positives = 123/205 (60%), Gaps = 8/205 (3%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + +D G + L+ ++F + + ++ V Q A +QGTH+ K S VSG
Sbjct: 1 MPTVALYKQDGSKNGEVSLSKEIFGIKPNESVVFDAVLMQRASLRQGTHAVKNRSAVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
GKKPWRQKGTGRAR G++R PQ+ GG T+ GP PRS++ KL +KVRRL +K LS + A+
Sbjct: 61 GKKPWRQKGTGRARQGSIRSPQWVGGGTVFGPTPRSYSYKLPRKVRRLAIKSVLSQKVAD 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVL--LCDGGCIHEKLKLATQNLHYVNVLP 275
L+V + L + KTK ++ KVL L DG ++ L+ +NL V V+
Sbjct: 121 QDLMVVDKLTFEAPKTKDFAKVLASLDVQSKVLVVLEDG---NDLAALSARNLANVTVIN 177
Query: 276 SVGLNVYSILQHDTLVMSRDAVNKI 300
+ +NV +L +D LVM+++A++++
Sbjct: 178 AKNVNVLDVLNNDKLVMTQEALSQV 202
>gi|387017114|gb|AFJ50675.1| 39S ribosomal protein L4, mitochondrial-like [Crotalus adamanteus]
Length = 301
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/222 (36%), Positives = 126/222 (56%), Gaps = 1/222 (0%)
Query: 78 SDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQ 137
SD +L+K L + Q + + ++ G L DVF V R DI+H V WQ
Sbjct: 53 SDPILRKCSLPFPKHLKPVQTWIESLQHYDARHLGLADLHPDVFAVMPRLDILHAVAIWQ 112
Query: 138 LAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPK-PRSHAI 196
++ TKT +E+ G G+KPWRQKG+GRARHG++R P + GG GP+ P S+
Sbjct: 113 KNFKRISYAKTKTRAEMHGGGRKPWRQKGSGRARHGSIRSPIWHGGGRAFGPRGPTSYYY 172
Query: 197 KLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGC 256
L K R LGLK+AL+A+ +G L + + LE+P+ +++ + + L D G
Sbjct: 173 MLPMKQRVLGLKVALTAKQMQGDLHIVDSLEMPTFDPQYLADLARYRHWGRSALFVDVGE 232
Query: 257 IHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVN 298
I E ++ A L V+P++GLNV+S+L+H+TLV++ + ++
Sbjct: 233 IPENIQSAASGLKTFTVVPAIGLNVHSMLKHETLVLTLETIS 274
>gi|331091666|ref|ZP_08340500.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 2_1_46FAA]
gi|330403423|gb|EGG82982.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 2_1_46FAA]
Length = 206
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 117/200 (58%), Gaps = 2/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N + G + L VF V + + ++H V QLA ++QGT KT SEVSG G+K
Sbjct: 4 VSVYNIEGNEVGTIDLNDAVFGVEVNEHLLHMAVVNQLANKRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ GG + P PR ++ KLNKK +R LK AL++R E K
Sbjct: 64 PWRQKGTGHARQGSTRSPQWTGGGVVFAPTPRDYSFKLNKKEKRAALKSALTSRVLENKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V +++ KTK N N + +K +++ + + +L+ +N+ V + +N
Sbjct: 124 IVLDEINFGEIKTKNFQNVLNNLNVSKALVVLEDD--NRNAELSARNIAAVKTARTNTIN 181
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY IL+++T+V ++ V KI
Sbjct: 182 VYDILKYNTVVTTKAVVEKI 201
>gi|348550164|ref|XP_003460902.1| PREDICTED: 39S ribosomal protein L4, mitochondrial-like [Cavia
porcellus]
Length = 296
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 91/249 (36%), Positives = 136/249 (54%), Gaps = 12/249 (4%)
Query: 53 GLSFLAS---RKFSTTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNE 109
GLS LA R + P+ S GA + +L++ L Q + + + E
Sbjct: 20 GLSSLAEEAVRPVKESEQEPEPSAGA--QEPVLRRCELPVPAHRRPVQAWIESLRGYEQE 77
Query: 110 DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGR 169
G L DVF R D++H+V WQ ++ TKT +EV G G+KPW+QKG+GR
Sbjct: 78 RVGLAELHPDVFATAPRLDVLHQVAIWQKNFKRISYAKTKTRAEVRGGGRKPWQQKGSGR 137
Query: 170 ARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEV 228
ARHG++R P +RGG HGP+ P S+ L KVR LGLK+AL+ + A+ L V + LE+
Sbjct: 138 ARHGSIRSPIWRGGGIAHGPRGPTSYYYMLPMKVRALGLKVALTVKLAQDDLHVVDSLEL 197
Query: 229 PSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKL----ATQNLHYVNVLPSVGLNVYSI 284
P+ +++ + VLL D HE + AT L +N++P+VGLNV+S+
Sbjct: 198 PTSDPQYLTELAHYRRWGDSVLLVD--LTHEGMPRNIVEATSRLKTINLIPAVGLNVHSM 255
Query: 285 LQHDTLVMS 293
L+H +LV++
Sbjct: 256 LKHHSLVLT 264
>gi|339624378|ref|ZP_08660167.1| 50S ribosomal protein L4 [Fructobacillus fructosus KCTC 3544]
Length = 207
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/183 (42%), Positives = 110/183 (60%), Gaps = 3/183 (1%)
Query: 119 DVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGP 178
+VF V +I V Q A +QGTH+ K S VSG G+KPW+QKGTGRAR G++R P
Sbjct: 22 EVFAVEANNAVITEAVLMQRASMRQGTHAVKNRSAVSGGGRKPWKQKGTGRARQGSIRSP 81
Query: 179 QFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTK-FIV 237
Q+RGG + GP PRS+A ++NKK L LK ALS + A+ KL+V + L KTK F
Sbjct: 82 QWRGGGIVFGPTPRSYAYRINKKAYNLALKSALSQKVADNKLVVVDALAFSEAKTKDFKQ 141
Query: 238 NYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAV 297
N ++K +++ DG +E A +NL V V+ + G+NV ++ D LV+ + A+
Sbjct: 142 VLANLAVDSKALVIVDGN--NENAIRAARNLANVQVMTAAGVNVLDVVNADKLVVVQSAI 199
Query: 298 NKI 300
+I
Sbjct: 200 EEI 202
>gi|257067059|ref|YP_003153315.1| 50S ribosomal protein L4 [Anaerococcus prevotii DSM 20548]
gi|256798939|gb|ACV29594.1| ribosomal protein L4/L1e [Anaerococcus prevotii DSM 20548]
Length = 207
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 125/200 (62%), Gaps = 1/200 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N E+ G + L +F+ I + ++ VV+ QLA ++QGT S KT SEV G G+K
Sbjct: 4 VDILNIKGENVGSLELNETLFNTEISEHSVYEVVKNQLANKRQGTQSAKTRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQKGTGRAR G++R P + GG + PKPR ++ K+ KK+RR L L+++ +G+L
Sbjct: 64 PFRQKGTGRARQGSIRAPHYTGGGVVFAPKPRDYSYKVPKKLRRKALYSVLTSKVVDGEL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V +DL++ ++KTK N +E KK + + + + +N+ V+V + +N
Sbjct: 124 IVLDDLKLENNKTKEAAAVLNAVEAGKKAYVVTAENDNNVYR-SFRNIEGVDVASASLIN 182
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY +++H+ LV+++DA+ K+
Sbjct: 183 VYDLVRHNKLVITKDAIAKL 202
>gi|373453139|ref|ZP_09545036.1| 50S ribosomal protein L4 [Eubacterium sp. 3_1_31]
gi|371964191|gb|EHO81726.1| 50S ribosomal protein L4 [Eubacterium sp. 3_1_31]
Length = 209
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/188 (42%), Positives = 110/188 (58%), Gaps = 1/188 (0%)
Query: 114 MVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHG 173
+ LA VF + + I + Q A +QGTH TK +EV G G+KPWRQKGTGRAR G
Sbjct: 17 ITLADTVFGIEPNQQCIFDAIVMQRASMRQGTHDTKNRTEVRGGGRKPWRQKGTGRARQG 76
Query: 174 TLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKT 233
++R Q+RGG T+ GP PRS+A KLNKKVRRL LK LS + AE + V + LE+ + KT
Sbjct: 77 SIRATQWRGGGTVFGPTPRSYAYKLNKKVRRLALKSVLSEKVAENAMSVVDKLELEAPKT 136
Query: 234 KFIVNYYNQMENTKKVL-LCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVM 292
K + +K L + G E L+ +N+ + +L + GLNVY I+ + +V
Sbjct: 137 KAFNEIIANLNAPRKTLFVVSEGEDFENAFLSMRNIPSMMMLTADGLNVYDIVNANKIVF 196
Query: 293 SRDAVNKI 300
+ AV +
Sbjct: 197 TEAAVKDV 204
>gi|381208332|ref|ZP_09915403.1| 50S ribosomal protein L4 [Lentibacillus sp. Grbi]
Length = 208
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 113/202 (55%), Gaps = 4/202 (1%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +D G + L VF + ++H V Q A +QGTH K SE G
Sbjct: 1 MPKVTLLKQDGSQAGDVELNDSVFGIEPNTHVLHEAVLMQRASMRQGTHDVKNRSERRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+ GG T+ GP PRS++ K+ KKVRRL LK A S++ E
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWVGGGTVFGPTPRSYSYKMPKKVRRLALKSAFSSKVQE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
L+V E++ + KTK IV + KVL+ E + + NL +VL
Sbjct: 121 DNLVVLENIAFDAPKTKEIVKMLEALNVDSKVLIVTADK-DENVIRSANNLPNAHVLTVE 179
Query: 278 GLNVYSILQHDTLVMSRDAVNK 299
+NV +L HD LV+++DA +K
Sbjct: 180 EINVLDLLMHDKLVITKDAADK 201
>gi|291518044|emb|CBK73265.1| LSU ribosomal protein L4P [Butyrivibrio fibrisolvens 16/4]
Length = 206
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 119/200 (59%), Gaps = 2/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G M L +F V I + ++H V QLA +QGT KT SEVSG G+K
Sbjct: 4 VSVFNMEGKEVGSMDLNDSIFAVEINEHLVHMAVVQQLANNRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ GG + P PR ++ KLNKK +R LK AL++ E K
Sbjct: 64 PWRQKGTGHARQGSTRSPQWTGGGVVFAPTPRDYSFKLNKKEKRAALKSALTSVVNENKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V ++L++ S KTK + K +++ D + + ++ +N+ V + +N
Sbjct: 124 IVVDELKLDSIKTKDFAKVLTNLNVEKALVVLDTN--DQNVVMSAKNIPTVKTALTNTIN 181
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY IL+++T+V+++ AV++I
Sbjct: 182 VYDILKYNTVVVTKAAVDQI 201
>gi|297623275|ref|YP_003704709.1| 50S ribosomal protein L4 [Truepera radiovictrix DSM 17093]
gi|297164455|gb|ADI14166.1| ribosomal protein L4/L1e [Truepera radiovictrix DSM 17093]
Length = 216
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/164 (46%), Positives = 107/164 (65%), Gaps = 4/164 (2%)
Query: 129 IIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHG 188
++H VV WQL+KR++GT +TKT VSGT K + QKGTGRARHG+ + P F GG G
Sbjct: 25 VLHEVVSWQLSKRRRGTAATKTRGTVSGTTAKMYPQKGTGRARHGSYKAPIFVGGGIAFG 84
Query: 189 PKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQ-MENTK 247
P+PRS+ L K+VRRLGLK+AL+ARA + KL + E + +F+ + + ++
Sbjct: 85 PQPRSYEYTLPKRVRRLGLKMALAARAQDNKLTLVEAFGIGGRTKEFVAWAKDHGFDGSE 144
Query: 248 KVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
+VLL E + A +NL +V+VLPS GLNVY IL+HD +V
Sbjct: 145 RVLLV---TDDELARRAARNLPWVSVLPSRGLNVYDILRHDHVV 185
>gi|195343148|ref|XP_002038160.1| GM17909 [Drosophila sechellia]
gi|194133010|gb|EDW54578.1| GM17909 [Drosophila sechellia]
Length = 296
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 115/201 (57%), Gaps = 2/201 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L DVF R DII V WQ R TKT +EV G G+KPW QKG GRAR
Sbjct: 81 GLIELHPDVFAAQPRVDIIQENVEWQRKYRYVSMAHTKTRAEVRGGGRKPWPQKGGGRAR 140
Query: 172 HGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPS 230
HG+LR P +GG +HGP+ P +H L R LGL LS + A+ L + E++++P+
Sbjct: 141 HGSLRSPMLKGGGVVHGPRSPTTHFYMLPFYKRVLGLTSTLSVKLAQDDLHIIENVDIPT 200
Query: 231 HKTKFIVNYYNQMENTKKVLLCDGGCIH-EKLKLATQNLHYVNVLPSVGLNVYSILQHDT 289
+F+ + + VL+ D + + A+ +L YVN++P+ GLNVYS+L+HDT
Sbjct: 201 GDAEFLKDLIAERNWGPSVLIVDEDHMFPANICQASDDLGYVNLMPTFGLNVYSMLKHDT 260
Query: 290 LVMSRDAVNKIVDRMHTPINR 310
LV++ AV + R+ +NR
Sbjct: 261 LVLTVAAVKHLEQRLLFQLNR 281
>gi|390478528|ref|XP_003735529.1| PREDICTED: LOW QUALITY PROTEIN: 39S ribosomal protein L4,
mitochondrial [Callithrix jacchus]
Length = 317
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 88/239 (36%), Positives = 130/239 (54%), Gaps = 9/239 (3%)
Query: 71 SSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDII 130
+SEG P +L K P + Q V + F E G L DVF R DI+
Sbjct: 39 ASEG-LPEPVLRKVEFPVPPFRRPV-QAWVESLRGFEQEHVGLADLHPDVFATAPRLDIL 96
Query: 131 HRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPK 190
H+V WQ ++ TKT +EV G G+KPW QKG+GRARHG++R P +RGG HGP+
Sbjct: 97 HQVAIWQKNFKRISYAKTKTRAEVRGGGRKPWPQKGSGRARHGSIRSPLWRGGGVAHGPR 156
Query: 191 -PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKV 249
P S+ L KVR LGLK+AL+ + A+ L + + LE+P+ +++ + V
Sbjct: 157 GPTSYYYMLPMKVRALGLKVALTVKLAQDDLHIVDSLELPTPDPQYLTDLARYRRWGDSV 216
Query: 250 LLCDGGCIHEKLKL----ATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNKIVDRM 304
LL + HE++ A L ++P+VGLNVYS+L+H TLV++ + + D++
Sbjct: 217 LLVN--LTHEEMPQSIVEAASRLKTFTLIPAVGLNVYSMLKHQTLVLTLPTIAFLEDKL 273
>gi|381181875|ref|ZP_09890703.1| 50S ribosomal protein L4 [Listeriaceae bacterium TTU M1-001]
gi|380318250|gb|EIA21541.1| 50S ribosomal protein L4 [Listeriaceae bacterium TTU M1-001]
Length = 207
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 118/203 (58%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + +D G + L VF + + ++ V+ Q A +QGTH K SEV G
Sbjct: 1 MPKLSLLKQDGSKAGEITLNDAVFGIEPNEKVVVDVILSQRASLRQGTHKVKNRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS+A KL KKVRRL +K LS++ +
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYAYKLPKKVRRLAIKSILSSKVQD 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++V E+L + KTK + + K L+ + ++L+ +N+ + V+P+
Sbjct: 121 ENIVVLENLAFDAPKTKDFAAFLKNISVDSKALIVVASE-SDNVELSARNIQGITVIPAE 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
++V + HD L++++ AV KI
Sbjct: 180 SISVLEVASHDKLIVTKAAVQKI 202
>gi|15925239|ref|NP_372773.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus Mu50]
gi|15927829|ref|NP_375362.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus N315]
gi|21283897|ref|NP_646985.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus MW2]
gi|49487031|ref|YP_044252.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57650833|ref|YP_187048.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus COL]
gi|82751838|ref|YP_417579.1| 50S ribosomal protein L4 [Staphylococcus aureus RF122]
gi|87160155|ref|YP_494838.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|88196161|ref|YP_500978.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus NCTC
8325]
gi|148268689|ref|YP_001247632.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus JH9]
gi|150394754|ref|YP_001317429.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus JH1]
gi|151222363|ref|YP_001333185.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus str.
Newman]
gi|156980564|ref|YP_001442823.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus Mu3]
gi|221140149|ref|ZP_03564642.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus str.
JKD6009]
gi|253317009|ref|ZP_04840222.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus str.
CF-Marseille]
gi|253729915|ref|ZP_04864080.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253734342|ref|ZP_04868507.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
TCH130]
gi|255007029|ref|ZP_05145630.2| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
Mu50-omega]
gi|257794595|ref|ZP_05643574.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A9781]
gi|258408803|ref|ZP_05681087.1| 50S ribosomal protein L4 [Staphylococcus aureus A9763]
gi|258422402|ref|ZP_05685314.1| LSU ribosomal protein L4/L1 [Staphylococcus aureus A9719]
gi|258422696|ref|ZP_05685601.1| LSU ribosomal protein L4/L1 [Staphylococcus aureus A9635]
gi|258439791|ref|ZP_05690537.1| ribosomal protein L4 [Staphylococcus aureus A9299]
gi|258442653|ref|ZP_05691213.1| ribosomal protein L4/L1e [Staphylococcus aureus A8115]
gi|258446648|ref|ZP_05694803.1| 50S ribosomal protein L4 [Staphylococcus aureus A6300]
gi|258450234|ref|ZP_05698326.1| 50S ribosomal protein L4 [Staphylococcus aureus A6224]
gi|258450756|ref|ZP_05698815.1| ribosomal protein L4/L1e [Staphylococcus aureus A5948]
gi|258455394|ref|ZP_05703354.1| ribosomal protein L4/L1e [Staphylococcus aureus A5937]
gi|262048513|ref|ZP_06021397.1| 50S ribosomal protein L4 [Staphylococcus aureus D30]
gi|262052038|ref|ZP_06024249.1| 50S ribosomal protein L4 [Staphylococcus aureus 930918-3]
gi|269203882|ref|YP_003283151.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus ED98]
gi|282893687|ref|ZP_06301919.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A8117]
gi|282917594|ref|ZP_06325346.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
D139]
gi|282922118|ref|ZP_06329814.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A9765]
gi|283767341|ref|ZP_06340256.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus H19]
gi|284025275|ref|ZP_06379673.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus 132]
gi|294848782|ref|ZP_06789527.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A9754]
gi|295404925|ref|ZP_06814738.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A8819]
gi|296275960|ref|ZP_06858467.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus MR1]
gi|297209938|ref|ZP_06926334.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus
subsp. aureus ATCC 51811]
gi|297243983|ref|ZP_06927873.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A8796]
gi|300910950|ref|ZP_07128400.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus
subsp. aureus TCH70]
gi|304379433|ref|ZP_07362168.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|379015373|ref|YP_005291609.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus VC40]
gi|379021913|ref|YP_005298575.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus M013]
gi|384548456|ref|YP_005737709.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
ED133]
gi|384551035|ref|YP_005740287.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
JKD6159]
gi|384862893|ref|YP_005745613.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus str.
JKD6008]
gi|384865431|ref|YP_005750790.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus ECT-R
2]
gi|384870797|ref|YP_005753511.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
T0131]
gi|385782484|ref|YP_005758655.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
11819-97]
gi|386729955|ref|YP_006196338.1| 50S ribosomal protein L4P [Staphylococcus aureus subsp. aureus
71193]
gi|386831821|ref|YP_006238475.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus HO
5096 0412]
gi|387143954|ref|YP_005732348.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus TW20]
gi|387151372|ref|YP_005742936.1| 50S ribosomal protein L4 [Staphylococcus aureus 04-02981]
gi|387603533|ref|YP_005735054.1| ribosomal protein L4/L1 family [Staphylococcus aureus subsp. aureus
ST398]
gi|387781212|ref|YP_005756010.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
LGA251]
gi|404479543|ref|YP_006710973.1| 50S ribosomal protein L4 [Staphylococcus aureus 08BA02176]
gi|415686906|ref|ZP_11450910.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CGS01]
gi|415692898|ref|ZP_11454789.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CGS03]
gi|416840553|ref|ZP_11903800.1| 50S ribosomal protein L4 [Staphylococcus aureus O11]
gi|416846677|ref|ZP_11906666.1| 50S ribosomal protein L4 [Staphylococcus aureus O46]
gi|417647844|ref|ZP_12297675.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21189]
gi|417652982|ref|ZP_12302720.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21172]
gi|417654631|ref|ZP_12304347.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21193]
gi|417795965|ref|ZP_12443182.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21305]
gi|417800514|ref|ZP_12447633.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21310]
gi|417801798|ref|ZP_12448880.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21318]
gi|417890906|ref|ZP_12534974.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21200]
gi|417893283|ref|ZP_12537318.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21201]
gi|417898922|ref|ZP_12542834.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21259]
gi|417900871|ref|ZP_12544749.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21266]
gi|417903514|ref|ZP_12547358.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21269]
gi|418279676|ref|ZP_12892887.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21178]
gi|418283860|ref|ZP_12896597.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21202]
gi|418287064|ref|ZP_12899696.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21209]
gi|418306863|ref|ZP_12918622.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21194]
gi|418310944|ref|ZP_12922475.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21331]
gi|418314361|ref|ZP_12925839.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21334]
gi|418319179|ref|ZP_12930565.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21232]
gi|418320234|ref|ZP_12931597.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
VCU006]
gi|418425413|ref|ZP_12998505.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus VRS1]
gi|418428304|ref|ZP_13001291.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus VRS2]
gi|418431189|ref|ZP_13004088.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
VRS3a]
gi|418435096|ref|ZP_13006945.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus VRS4]
gi|418437863|ref|ZP_13009638.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus VRS5]
gi|418440795|ref|ZP_13012479.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus VRS6]
gi|418443765|ref|ZP_13015350.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus VRS7]
gi|418446764|ref|ZP_13018224.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus VRS8]
gi|418449853|ref|ZP_13021222.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus VRS9]
gi|418452687|ref|ZP_13024008.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
VRS10]
gi|418455647|ref|ZP_13026895.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
VRS11a]
gi|418458523|ref|ZP_13029711.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
VRS11b]
gi|418560150|ref|ZP_13124672.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21252]
gi|418563535|ref|ZP_13127971.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21262]
gi|418568432|ref|ZP_13132778.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21272]
gi|418572018|ref|ZP_13136233.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21283]
gi|418573202|ref|ZP_13137402.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21333]
gi|418577450|ref|ZP_13141548.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1114]
gi|418599499|ref|ZP_13162982.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21343]
gi|418639956|ref|ZP_13202194.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus IS-3]
gi|418642224|ref|ZP_13204419.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
IS-24]
gi|418645222|ref|ZP_13207349.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
IS-55]
gi|418648043|ref|ZP_13210093.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
IS-88]
gi|418650862|ref|ZP_13212879.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
IS-91]
gi|418653538|ref|ZP_13215476.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
IS-99]
gi|418657465|ref|ZP_13219232.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
IS-105]
gi|418660091|ref|ZP_13221735.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
IS-111]
gi|418663005|ref|ZP_13224533.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
IS-122]
gi|418872397|ref|ZP_13426737.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
IS-125]
gi|418876104|ref|ZP_13430352.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIGC93]
gi|418876456|ref|ZP_13430698.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1165]
gi|418881937|ref|ZP_13436147.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1213]
gi|418882211|ref|ZP_13436415.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1769]
gi|418884860|ref|ZP_13439016.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1150]
gi|418887485|ref|ZP_13441624.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1524]
gi|418893028|ref|ZP_13447133.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1057]
gi|418901816|ref|ZP_13455860.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1770]
gi|418910079|ref|ZP_13464067.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG547]
gi|418912831|ref|ZP_13466805.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|418918315|ref|ZP_13472264.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIGC348]
gi|418923975|ref|ZP_13477881.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG2018]
gi|418926816|ref|ZP_13480706.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1612]
gi|418929692|ref|ZP_13483544.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1750]
gi|418932553|ref|ZP_13486379.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIGC128]
gi|418946774|ref|ZP_13499183.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
IS-157]
gi|418951668|ref|ZP_13503747.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
IS-160]
gi|418955167|ref|ZP_13507115.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
IS-189]
gi|418980700|ref|ZP_13528474.1| LSU ribosomal protein L1E (L4P) [Staphylococcus aureus subsp.
aureus DR10]
gi|418989280|ref|ZP_13536947.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1835]
gi|418989455|ref|ZP_13537119.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1096]
gi|418992240|ref|ZP_13539885.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG290]
gi|419774883|ref|ZP_14300836.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CO-23]
gi|419786249|ref|ZP_14311986.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus IS-M]
gi|421149847|ref|ZP_15609504.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus str.
Newbould 305]
gi|422743263|ref|ZP_16797255.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus
subsp. aureus MRSA177]
gi|422746515|ref|ZP_16800447.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus
subsp. aureus MRSA131]
gi|424774969|ref|ZP_18201970.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus CM05]
gi|424786232|ref|ZP_18213023.1| LSU ribosomal protein L4p (L1e) [Staphylococcus aureus CN79]
gi|440706709|ref|ZP_20887433.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21282]
gi|440735607|ref|ZP_20915210.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus DSM
20231]
gi|443635894|ref|ZP_21120013.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21236]
gi|443640544|ref|ZP_21124532.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21196]
gi|448742581|ref|ZP_21724521.1| 50S ribosomal protein L4 [Staphylococcus aureus KT/314250]
gi|448745007|ref|ZP_21726882.1| 50S ribosomal protein L4 [Staphylococcus aureus KT/Y21]
gi|46577149|sp|P61058.1|RL4_STAAM RecName: Full=50S ribosomal protein L4
gi|46577150|sp|P61059.1|RL4_STAAN RecName: Full=50S ribosomal protein L4
gi|46577151|sp|P61060.1|RL4_STAAW RecName: Full=50S ribosomal protein L4
gi|56749373|sp|Q6G772.1|RL4_STAAS RecName: Full=50S ribosomal protein L4
gi|81693960|sp|Q5HDV9.1|RL4_STAAC RecName: Full=50S ribosomal protein L4
gi|109893640|sp|Q2FEP0.1|RL4_STAA3 RecName: Full=50S ribosomal protein L4
gi|109893641|sp|Q2YYP7.1|RL4_STAAB RecName: Full=50S ribosomal protein L4
gi|122538859|sp|Q2FW07.1|RL4_STAA8 RecName: Full=50S ribosomal protein L4
gi|166199911|sp|A7X5G2.1|RL4_STAA1 RecName: Full=50S ribosomal protein L4
gi|172049047|sp|A6QJ91.1|RL4_STAAE RecName: Full=50S ribosomal protein L4
gi|189042887|sp|A6U3X4.1|RL4_STAA2 RecName: Full=50S ribosomal protein L4
gi|189042888|sp|A5IV33.1|RL4_STAA9 RecName: Full=50S ribosomal protein L4
gi|13702049|dbj|BAB43341.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus N315]
gi|14248022|dbj|BAB58411.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus Mu50]
gi|21205339|dbj|BAB96033.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus MW2]
gi|49245474|emb|CAG43951.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57285019|gb|AAW37113.1| ribosomal protein L4 [Staphylococcus aureus subsp. aureus COL]
gi|82657369|emb|CAI81810.1| 50S ribosomal protein L4 [Staphylococcus aureus RF122]
gi|87126129|gb|ABD20643.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87203719|gb|ABD31529.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|147741758|gb|ABQ50056.1| LSU ribosomal protein L4P [Staphylococcus aureus subsp. aureus JH9]
gi|149947206|gb|ABR53142.1| ribosomal protein L4/L1e [Staphylococcus aureus subsp. aureus JH1]
gi|150375163|dbj|BAF68423.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus str.
Newman]
gi|156722699|dbj|BAF79116.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus Mu3]
gi|253726362|gb|EES95091.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253727659|gb|EES96388.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
TCH130]
gi|257788567|gb|EEV26907.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A9781]
gi|257840486|gb|EEV64946.1| 50S ribosomal protein L4 [Staphylococcus aureus A9763]
gi|257841833|gb|EEV66270.1| LSU ribosomal protein L4/L1 [Staphylococcus aureus A9719]
gi|257847107|gb|EEV71116.1| LSU ribosomal protein L4/L1 [Staphylococcus aureus A9635]
gi|257847567|gb|EEV71569.1| ribosomal protein L4 [Staphylococcus aureus A9299]
gi|257851774|gb|EEV75708.1| ribosomal protein L4/L1e [Staphylococcus aureus A8115]
gi|257854716|gb|EEV77664.1| 50S ribosomal protein L4 [Staphylococcus aureus A6300]
gi|257856326|gb|EEV79235.1| 50S ribosomal protein L4 [Staphylococcus aureus A6224]
gi|257861539|gb|EEV84341.1| ribosomal protein L4/L1e [Staphylococcus aureus A5948]
gi|257862605|gb|EEV85373.1| ribosomal protein L4/L1e [Staphylococcus aureus A5937]
gi|259160093|gb|EEW45126.1| 50S ribosomal protein L4 [Staphylococcus aureus 930918-3]
gi|259163371|gb|EEW47929.1| 50S ribosomal protein L4 [Staphylococcus aureus D30]
gi|262076172|gb|ACY12145.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus ED98]
gi|269941838|emb|CBI50248.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus TW20]
gi|282318556|gb|EFB48914.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
D139]
gi|282593586|gb|EFB98579.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A9765]
gi|282763745|gb|EFC03873.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A8117]
gi|283461220|gb|EFC08304.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus H19]
gi|283471471|emb|CAQ50682.1| ribosomal protein L4/L1 family [Staphylococcus aureus subsp. aureus
ST398]
gi|285817911|gb|ADC38398.1| 50S ribosomal protein L4 [Staphylococcus aureus 04-02981]
gi|294824161|gb|EFG40585.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A9754]
gi|294969870|gb|EFG45888.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A8819]
gi|296885611|gb|EFH24548.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus
subsp. aureus ATCC 51811]
gi|297178761|gb|EFH38006.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A8796]
gi|298695505|gb|ADI98727.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
ED133]
gi|300887930|gb|EFK83125.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus
subsp. aureus TCH70]
gi|302333885|gb|ADL24078.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
JKD6159]
gi|302752122|gb|ADL66299.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus str.
JKD6008]
gi|304341965|gb|EFM07869.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|312830598|emb|CBX35440.1| 50S ribosomal protein L4 (BL4) [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|315129671|gb|EFT85662.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CGS03]
gi|315198221|gb|EFU28552.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CGS01]
gi|320140213|gb|EFW32072.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus
subsp. aureus MRSA131]
gi|320143483|gb|EFW35264.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus
subsp. aureus MRSA177]
gi|323440071|gb|EGA97786.1| 50S ribosomal protein L4 [Staphylococcus aureus O11]
gi|323442745|gb|EGB00371.1| 50S ribosomal protein L4 [Staphylococcus aureus O46]
gi|329314932|gb|AEB89345.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
T0131]
gi|329723693|gb|EGG60222.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21172]
gi|329730071|gb|EGG66461.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21193]
gi|329732021|gb|EGG68376.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21189]
gi|334270378|gb|EGL88783.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21305]
gi|334271060|gb|EGL89455.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21310]
gi|334276059|gb|EGL94327.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21318]
gi|341846640|gb|EGS87831.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21266]
gi|341846851|gb|EGS88039.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21259]
gi|341849928|gb|EGS91064.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21269]
gi|341853784|gb|EGS94664.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21200]
gi|341855479|gb|EGS96324.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21201]
gi|344178314|emb|CCC88800.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
LGA251]
gi|359831222|gb|AEV79200.1| LSU ribosomal protein L4p (L1e) [Staphylococcus aureus subsp.
aureus M013]
gi|364523473|gb|AEW66223.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
11819-97]
gi|365164488|gb|EHM56402.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21209]
gi|365165771|gb|EHM57520.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21202]
gi|365170329|gb|EHM61354.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21178]
gi|365227938|gb|EHM69125.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
VCU006]
gi|365233987|gb|EHM74929.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21334]
gi|365235734|gb|EHM76645.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21331]
gi|365241432|gb|EHM82178.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21232]
gi|365246254|gb|EHM86824.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21194]
gi|371970773|gb|EHO88189.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21262]
gi|371972861|gb|EHO90230.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21252]
gi|371977717|gb|EHO94977.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21283]
gi|371979661|gb|EHO96887.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21272]
gi|371983289|gb|EHP00436.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21333]
gi|374364070|gb|AEZ38175.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus VC40]
gi|374396815|gb|EHQ68040.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21343]
gi|375015574|gb|EHS09221.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus IS-3]
gi|375017272|gb|EHS10893.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
IS-24]
gi|375018726|gb|EHS12296.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
IS-99]
gi|375023576|gb|EHS17026.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
IS-55]
gi|375027308|gb|EHS20672.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
IS-88]
gi|375027518|gb|EHS20881.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
IS-91]
gi|375030629|gb|EHS23939.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
IS-105]
gi|375033194|gb|EHS26399.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
IS-111]
gi|375034998|gb|EHS28137.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
IS-122]
gi|375367239|gb|EHS71206.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
IS-125]
gi|375371620|gb|EHS75390.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
IS-189]
gi|375371956|gb|EHS75713.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
IS-160]
gi|375377424|gb|EHS80892.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
IS-157]
gi|377698773|gb|EHT23120.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1165]
gi|377699332|gb|EHT23678.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1114]
gi|377700875|gb|EHT25208.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1057]
gi|377715567|gb|EHT39756.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1835]
gi|377718120|gb|EHT42292.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1769]
gi|377718692|gb|EHT42863.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1750]
gi|377725906|gb|EHT50018.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1096]
gi|377727893|gb|EHT51995.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG547]
gi|377728802|gb|EHT52898.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1150]
gi|377729561|gb|EHT53653.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1213]
gi|377740526|gb|EHT64522.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1612]
gi|377745169|gb|EHT69145.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1770]
gi|377748242|gb|EHT72203.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG2018]
gi|377749557|gb|EHT73505.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG290]
gi|377756098|gb|EHT79995.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1524]
gi|377758874|gb|EHT82755.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|377767832|gb|EHT91618.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIGC93]
gi|377768601|gb|EHT92379.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIGC348]
gi|377772727|gb|EHT96473.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIGC128]
gi|379991559|gb|EIA13030.1| LSU ribosomal protein L1E (L4P) [Staphylococcus aureus subsp.
aureus DR10]
gi|383360895|gb|EID38281.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus IS-M]
gi|383971282|gb|EID87361.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CO-23]
gi|384231248|gb|AFH70495.1| LSU ribosomal protein L1E (L4P) [Staphylococcus aureus subsp.
aureus 71193]
gi|385197213|emb|CCG16859.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus HO
5096 0412]
gi|387715937|gb|EIK04003.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus VRS2]
gi|387716429|gb|EIK04487.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
VRS3a]
gi|387716976|gb|EIK05013.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus VRS1]
gi|387723639|gb|EIK11372.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus VRS4]
gi|387725035|gb|EIK12665.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus VRS5]
gi|387728127|gb|EIK15626.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus VRS6]
gi|387733076|gb|EIK20273.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus VRS8]
gi|387734069|gb|EIK21225.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus VRS7]
gi|387734396|gb|EIK21549.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus VRS9]
gi|387741967|gb|EIK28791.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
VRS10]
gi|387742542|gb|EIK29355.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
VRS11a]
gi|387743749|gb|EIK30534.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
VRS11b]
gi|394330022|gb|EJE56119.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus str.
Newbould 305]
gi|402347071|gb|EJU82138.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus CM05]
gi|404441032|gb|AFR74225.1| 50S ribosomal protein L4 [Staphylococcus aureus 08BA02176]
gi|408424161|emb|CCJ11572.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
ST228]
gi|408426150|emb|CCJ13537.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
ST228]
gi|408428138|emb|CCJ15501.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
ST228]
gi|408430127|emb|CCJ27292.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
ST228]
gi|408432114|emb|CCJ19429.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
ST228]
gi|408434108|emb|CCJ21393.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
ST228]
gi|408436101|emb|CCJ23361.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
ST228]
gi|408438084|emb|CCJ25327.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
ST228]
gi|421955501|gb|EKU07839.1| LSU ribosomal protein L4p (L1e) [Staphylococcus aureus CN79]
gi|436430487|gb|ELP27849.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus DSM
20231]
gi|436506860|gb|ELP42619.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21282]
gi|443405065|gb|ELS63677.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21196]
gi|443408710|gb|ELS67227.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21236]
gi|445546740|gb|ELY15026.1| 50S ribosomal protein L4 [Staphylococcus aureus KT/314250]
gi|445561623|gb|ELY17815.1| 50S ribosomal protein L4 [Staphylococcus aureus KT/Y21]
Length = 207
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 111/189 (58%), Gaps = 1/189 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ VF + ++ + Q A +QGTH+ K S VSG G+KPW+QKGTGRAR
Sbjct: 15 GSIELSDAVFGIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVSGGGRKPWKQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
GT+R PQ+RGG + GP PRS+A K+ KK+RRL L+ ALS +A E L V + +
Sbjct: 75 QGTIRAPQWRGGGIVFGPTPRSYAYKMPKKMRRLALRSALSFKAQENGLTVVDAFNFEAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KTK N + +E KKVL+ ++L+ +N+ V V + GLNV I D+LV
Sbjct: 135 KTKEFKNVLSTLEQPKKVLVVTENE-DVNVELSARNIPGVQVTTAQGLNVLDITNADSLV 193
Query: 292 MSRDAVNKI 300
++ A K+
Sbjct: 194 ITEAAAKKV 202
>gi|317496189|ref|ZP_07954549.1| ribosomal protein L4/L1 family protein [Gemella morbillorum M424]
gi|316913764|gb|EFV35250.1| ribosomal protein L4/L1 family protein [Gemella morbillorum M424]
Length = 207
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/203 (40%), Positives = 120/203 (59%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNED--KGFMVLAGD-VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + F +D K V A D VF + + ++ + V Q A +QGTH TK SEVSG
Sbjct: 1 MPQLDLFKQDGTKVGAVEANDAVFGIEPNQHVLFQAVTLQRASLRQGTHKTKGRSEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ K+ +K+RRL L+ ALS++ A
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSFKMPRKMRRLALRSALSSKVAA 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++ E L S KTK + + KKVL + E L+ +N+ V + +
Sbjct: 121 NEVFALETLTFDSIKTKNFKEMLSNLSLEKKVLFVV-TELEENTVLSGRNIPGVEFVETT 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
GLNV IL + +V ++DA+ K+
Sbjct: 180 GLNVLDILGSNKVVFTKDALEKV 202
>gi|323483300|ref|ZP_08088690.1| hypothetical protein HMPREF9474_00439 [Clostridium symbiosum
WAL-14163]
gi|323691202|ref|ZP_08105478.1| ribosomal protein L4/L1 family protein [Clostridium symbiosum
WAL-14673]
gi|355626527|ref|ZP_09048802.1| 50S ribosomal protein L4 [Clostridium sp. 7_3_54FAA]
gi|323403398|gb|EGA95706.1| hypothetical protein HMPREF9474_00439 [Clostridium symbiosum
WAL-14163]
gi|323504721|gb|EGB20507.1| ribosomal protein L4/L1 family protein [Clostridium symbiosum
WAL-14673]
gi|354820847|gb|EHF05252.1| 50S ribosomal protein L4 [Clostridium sp. 7_3_54FAA]
Length = 206
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 115/200 (57%), Gaps = 2/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N + G + L VF V + + ++H V QLA ++QGT KT SEVSG G+K
Sbjct: 4 VSVYNIEGNEVGTLELNDSVFGVEVNEHLVHLAVVAQLANKRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ GG + P PR + I+LNKK +R LK AL++R E K
Sbjct: 64 PWRQKGTGHARQGSTRSPQWTGGGVVFAPTPRDYTIRLNKKEKRAALKSALTSRVNENKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + + KTK + N ++ K +++ D C + L+ +N+ V +N
Sbjct: 124 IVVDAMNFDEIKTKKFQSVMNNLKVNKALVVLDDTCGN--TVLSARNIPTVKTASVNTIN 181
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY IL+++T+V ++ AV I
Sbjct: 182 VYDILKYNTVVATKAAVASI 201
>gi|270291132|ref|ZP_06197355.1| 50S ribosomal protein L4/L1 [Pediococcus acidilactici 7_4]
gi|304385413|ref|ZP_07367758.1| ribosomal protein L4/L1 family protein [Pediococcus acidilactici
DSM 20284]
gi|418069690|ref|ZP_12706967.1| 50S ribosomal protein L4P [Pediococcus acidilactici MA18/5M]
gi|427442937|ref|ZP_18925765.1| 50S ribosomal protein L4/L1 [Pediococcus lolii NGRI 0510Q]
gi|270280528|gb|EFA26363.1| 50S ribosomal protein L4/L1 [Pediococcus acidilactici 7_4]
gi|304328620|gb|EFL95841.1| ribosomal protein L4/L1 family protein [Pediococcus acidilactici
DSM 20284]
gi|357536221|gb|EHJ20252.1| 50S ribosomal protein L4P [Pediococcus acidilactici MA18/5M]
gi|425786585|dbj|GAC46553.1| 50S ribosomal protein L4/L1 [Pediococcus lolii NGRI 0510Q]
Length = 207
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 118/203 (58%), Gaps = 4/203 (1%)
Query: 105 NFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ F +D G + L D+F + D++ V Q A +QGTH+ K S V G GKKP
Sbjct: 5 SLFKQDGTQNGTVELNADIFGIEPNNDVVFEAVVMQRASMRQGTHAVKNRSAVRGGGKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
WRQKGTGRAR G++R PQ+RGG + GP PRS+A + KK+RRL LK LS + + L+
Sbjct: 65 WRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYSIPKKMRRLALKSVLSQKVLDESLV 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNV 281
V ++ + + KTK +++ KK LL +E LA +NL V ++ G+NV
Sbjct: 125 VVDEFKFETPKTKDFAQSLSKLNVEKKALLVLEED-NESAVLAARNLSNVKIVEPTGINV 183
Query: 282 YSILQHDTLVMSRDAVNKIVDRM 304
I+ D LV+++ A++++ + +
Sbjct: 184 LDIMNSDKLVITQKALSQVEEAL 206
>gi|392413510|ref|YP_006450117.1| 50S ribosomal protein L4, bacterial/organelle [Desulfomonile
tiedjei DSM 6799]
gi|390626646|gb|AFM27853.1| 50S ribosomal protein L4, bacterial/organelle [Desulfomonile
tiedjei DSM 6799]
Length = 208
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/186 (46%), Positives = 121/186 (65%), Gaps = 2/186 (1%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
+F+V R ++ +VV WQ AKR+ GT +TKT ++SG GKKPWRQKGTGRAR GT R P
Sbjct: 23 IFNVESRDQLVQQVVVWQQAKRRCGTAATKTRGQISGGGKKPWRQKGTGRARAGTNRSPV 82
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
+ GG T+ GP PRS+A L KKVR+ L+ LS+R + L V + +E+ S KTK +
Sbjct: 83 WVGGGTVFGPHPRSYAFSLPKKVRKEALRSVLSSRLRDNNLFVVDKIELESPKTKLFLET 142
Query: 240 YNQME-NTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVN 298
M +T K L E L +++NL++V +LP+ GLNVY +L++D LV+ +DAV
Sbjct: 143 VKAMGLDTGKTLFVTSEK-DETLSRSSRNLYHVMILPTEGLNVYDLLRYDRLVLLQDAVP 201
Query: 299 KIVDRM 304
KI +R+
Sbjct: 202 KIHERL 207
>gi|339319341|ref|YP_004679036.1| 50S ribosomal protein L4 [Candidatus Midichloria mitochondrii
IricVA]
gi|338225466|gb|AEI88350.1| ribosomal protein L4 [Candidatus Midichloria mitochondrii IricVA]
Length = 166
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 107/167 (64%), Gaps = 2/167 (1%)
Query: 138 LAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIK 197
+AKR+ G HS+K ++ V G+ +K ++QKGTG ARHG++R PQFRGG + GP PRS+
Sbjct: 1 MAKRRAGNHSSKEVAAVEGSTRKIYKQKGTGGARHGSIRAPQFRGGAVIFGPHPRSYEFS 60
Query: 198 LNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCI 257
LNKK+R+LGL ALS + E ++V ++L+ +K ++ + N LL D G +
Sbjct: 61 LNKKIRKLGLISALSLKKRENLIIVLDELKAQGYKAVLMLKKLKGL-NATASLLVD-GSV 118
Query: 258 HEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNKIVDRM 304
+ + NL YV+ LP GLNV IL+HD L+++ DA+ KI +R+
Sbjct: 119 DSAVLGSISNLPYVDALPVAGLNVLDILKHDKLILTVDALKKIEERL 165
>gi|313895056|ref|ZP_07828613.1| 50S ribosomal protein L4 [Selenomonas sp. oral taxon 137 str.
F0430]
gi|312975951|gb|EFR41409.1| 50S ribosomal protein L4 [Selenomonas sp. oral taxon 137 str.
F0430]
Length = 207
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 115/202 (56%), Gaps = 5/202 (2%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + ++ G + L+ D F+V + ++H+ V QLA ++ GTH+TKT V G GKK
Sbjct: 4 VAVYDMSHKQVGEIDLSDDFFNVEMNAGLLHQAVVLQLASQRLGTHATKTRGLVRGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G+ R P + GG T+ GP PR + + +K RRL LK ALS + G
Sbjct: 64 PWRQKGTGRARAGSTRSPLWVGGGTVFGPHPRKYGFTMPRKQRRLALKCALSDKVRTGDF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLA--TQNLHYVNVLPSVG 278
+V E L+ + KTK V N K L E + +A T N+ V + + G
Sbjct: 124 IVLESLDFDAPKTKQAVKLLNDFGVDAKSLFI---TADEAVNVARSTSNIPGVKAITAAG 180
Query: 279 LNVYSILQHDTLVMSRDAVNKI 300
+NV+ IL HD L +++DAV +I
Sbjct: 181 INVFDILHHDKLFITKDAVTRI 202
>gi|315037531|ref|YP_004031099.1| 50S ribosomal protein L4 [Lactobacillus amylovorus GRL 1112]
gi|325956004|ref|YP_004286614.1| 50S ribosomal protein L4 [Lactobacillus acidophilus 30SC]
gi|385816889|ref|YP_005853279.1| 50S ribosomal protein L4 [Lactobacillus amylovorus GRL1118]
gi|312275664|gb|ADQ58304.1| 50S ribosomal protein L4 [Lactobacillus amylovorus GRL 1112]
gi|325332569|gb|ADZ06477.1| 50S ribosomal protein L4 [Lactobacillus acidophilus 30SC]
gi|327182827|gb|AEA31274.1| 50S ribosomal protein L4 [Lactobacillus amylovorus GRL1118]
Length = 205
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/192 (39%), Positives = 113/192 (58%), Gaps = 3/192 (1%)
Query: 109 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTG 168
+D G + L VF + +++ + Q A ++QGT K S V G GKKPWRQKGTG
Sbjct: 12 KDSGEVTLNDKVFGIEPNDNVVFEAIIRQRAGKRQGTSKVKNRSAVRGGGKKPWRQKGTG 71
Query: 169 RARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEV 228
RAR G++R PQ+RGG T+ GP PRS+A + +K RRL +K LS + + L+V + L +
Sbjct: 72 RARQGSIRAPQWRGGGTVFGPTPRSYAYTMPRKQRRLAIKSVLSQKLIDNDLIVLDKLTM 131
Query: 229 PSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHD 288
+ KTK +V+ N + KVL+ ++L+ +NL V +P GLNV + +
Sbjct: 132 SAPKTKELVSMLNSLNADGKVLIV---TDDNNVQLSARNLAKVKAVPVNGLNVEDAVNYG 188
Query: 289 TLVMSRDAVNKI 300
L++S+DAV KI
Sbjct: 189 KLILSQDAVKKI 200
>gi|291542036|emb|CBL15146.1| LSU ribosomal protein L4P [Ruminococcus bromii L2-63]
Length = 207
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 117/200 (58%), Gaps = 1/200 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + ++ G + LA VF + ++H++V LA ++QGT S T SEVSG GKK
Sbjct: 4 LAVVDMEGKNVGTIELAESVFGIEPNAAVMHQMVVNYLAAQRQGTQSALTRSEVSGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G+ R PQ+ G + PKPR + +NKKVRRL +K A S++ E +L
Sbjct: 64 PWRQKGTGRARQGSTRAPQWTHGGVVFAPKPRDYRFSVNKKVRRLAMKSAFSSKVMENEL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + + + +KTK IV + + KK L+ + +K A N+ V LN
Sbjct: 124 IVVDSISMDEYKTKKIVAMLSAIGAEKKALIVLPEVDSKVIKSAN-NIPGVKTAQVNTLN 182
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY IL D L++ +DAV+KI
Sbjct: 183 VYDILNADKLIIVKDAVSKI 202
>gi|91094379|ref|XP_970941.1| PREDICTED: similar to mitochondrial 39S ribosomal protein L4
[Tribolium castaneum]
gi|270014913|gb|EFA11361.1| hypothetical protein TcasGA2_TC011518 [Tribolium castaneum]
Length = 274
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/206 (40%), Positives = 116/206 (56%), Gaps = 4/206 (1%)
Query: 109 EDKGFMVLA--GDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKG 166
E+K +L +VF R DIIH VRWQ R TK+ EV G G+KPW QKG
Sbjct: 54 EEKKLAILELHPEVFAANPRVDIIHDNVRWQSLYRYVSYAHTKSRFEVRGGGRKPWPQKG 113
Query: 167 TGRARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFED 225
GRARHG++R P FRGG +HGPK P H L R GL LS + A+ L V D
Sbjct: 114 LGRARHGSIRSPLFRGGGVIHGPKSPNPHFYMLPFYTRIHGLTATLSIKLAQDDLHVITD 173
Query: 226 LEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEK-LKLATQNLHYVNVLPSVGLNVYSI 284
LE+P+ F+ + VL D I + + AT ++ + N++P+ GLNVYS+
Sbjct: 174 LEIPTDDPNFVEELVKSRKWGPSVLFVDESDIMPRNITAATDSVKHFNLMPAYGLNVYSM 233
Query: 285 LQHDTLVMSRDAVNKIVDRMHTPINR 310
L+HDTLV++R A++ I ++ T +++
Sbjct: 234 LKHDTLVLTRAALDLIESKLLTHLHK 259
>gi|229829428|ref|ZP_04455497.1| hypothetical protein GCWU000342_01518 [Shuttleworthia satelles DSM
14600]
gi|229791859|gb|EEP27973.1| hypothetical protein GCWU000342_01518 [Shuttleworthia satelles DSM
14600]
Length = 206
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 115/200 (57%), Gaps = 2/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ M LA VF V + ++H V QLA ++QGT KT SEV G G+K
Sbjct: 4 VSVFNMEGKEVEQMELADSVFGVEVNDHLVHMAVLQQLANKRQGTQKAKTRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ GG + P PR ++ KLN+K +R L ALS+R E KL
Sbjct: 64 PWRQKGTGHARQGSTRSPQWTGGVVVFAPTPRDYSFKLNRKEKRAALLSALSSRVQENKL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + L KTK ++ K +++ G EK ++ +N+ V + +N
Sbjct: 124 IVVDQLAFDEIKTKKFAEVLKNLKVEKALVVL--GQDDEKAIISARNIPDVKTAQTNSIN 181
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY IL+++TLV++++AV I
Sbjct: 182 VYDILKYNTLVVTKEAVKSI 201
>gi|417895551|ref|ZP_12539537.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21235]
gi|341841679|gb|EGS83132.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21235]
Length = 207
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 111/189 (58%), Gaps = 1/189 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ VF + ++ + Q A +QGTH+ K S VSG G+KPW+QKGTGRAR
Sbjct: 15 GSIELSDAVFGIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVSGGGRKPWKQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
GT+R PQ+RGG + GP PRS+A K+ KK+RRL L+ ALS +A E L V + +
Sbjct: 75 QGTIRAPQWRGGGIVFGPTPRSYAYKMPKKMRRLALRSALSFKAQENGLTVVDAFNFEAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KTK N + +E KKVL+ ++L+ +N+ V V + GLNV I D+LV
Sbjct: 135 KTKEFKNVLSTLEQLKKVLVVTENE-DVNVELSARNIPGVQVTTAQGLNVLDITNADSLV 193
Query: 292 MSRDAVNKI 300
++ A K+
Sbjct: 194 ITEAAAKKV 202
>gi|332982708|ref|YP_004464149.1| 50S ribosomal protein L4P [Mahella australiensis 50-1 BON]
gi|332700386|gb|AEE97327.1| LSU ribosomal protein L4P [Mahella australiensis 50-1 BON]
Length = 207
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 123/203 (60%), Gaps = 7/203 (3%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+PV N + G + L ++F + + + +H+VV+ QLA ++QGT S KT EV G G+K
Sbjct: 4 VPVYNIEGQQVGEIELKDEIFGIEVNEAALHQVVQMQLANKRQGTQSAKTRGEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+ G + PKPR ++ L KK+RRL +K AL+++ + +L
Sbjct: 64 PWRQKGTGRARQGSIRAPQWIKGGVVFAPKPRDYSYTLPKKLRRLAMKSALTSKVRDNEL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEK---LKLATQNLHYVNVLPSV 277
+V +++ + KTK + ++ +KVL+ + EK ++ +++N+ V
Sbjct: 124 IVLDNISIEQPKTKEMFRILRNLKADRKVLM----VLPEKDEIIQKSSRNIPGVKTALVN 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
LNVY IL D ++ +DAV K+
Sbjct: 180 TLNVYDILNCDKFIILKDAVPKV 202
>gi|158317790|ref|YP_001510298.1| 50S ribosomal protein L4 [Frankia sp. EAN1pec]
gi|158113195|gb|ABW15392.1| ribosomal protein L4/L1e [Frankia sp. EAN1pec]
Length = 247
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/214 (40%), Positives = 122/214 (57%), Gaps = 8/214 (3%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
D +PV D G + L G VFDVP+ +IH+VV QLA +QGTHSTKT EV G
Sbjct: 20 DRTVPVHAPAGGDAGSVELPGAVFDVPVNVPLIHQVVVAQLAAARQGTHSTKTRGEVRGG 79
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KP+RQKGTGRAR G+LR PQF GG +HGP PR++ + KK++ L+ ALS RA
Sbjct: 80 GRKPYRQKGTGRARQGSLRAPQFTGGGIVHGPTPRNYDQRTPKKMKAAALRGALSDRARN 139
Query: 218 GKLLVFEDL---EVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLK-LATQNLHYVNV 273
+L V L + PS TK V + + ++VL+ ++L L+ +N+ V++
Sbjct: 140 NRLHVVSSLVAGDTPS--TKSAVAALTSLVDARRVLVV--ALRSDELTWLSLRNVAEVHL 195
Query: 274 LPSVGLNVYSILQHDTLVMSRDAVNKIVDRMHTP 307
L LN Y +L D +V + A+ + R P
Sbjct: 196 LDPGQLNTYDVLVSDDVVFTEGALAAYLGRASRP 229
>gi|389580454|ref|ZP_10170481.1| 50S ribosomal protein L4, bacterial/organelle [Desulfobacter
postgatei 2ac9]
gi|389402089|gb|EIM64311.1| 50S ribosomal protein L4, bacterial/organelle [Desulfobacter
postgatei 2ac9]
Length = 206
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/190 (37%), Positives = 120/190 (63%), Gaps = 2/190 (1%)
Query: 116 LAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTL 175
L ++F +P++ ++H VVR QL ++ GT ++KT VSG+ +K +RQKGTG AR G++
Sbjct: 19 LPDEIFSIPVKTSVLHEVVRSQLVSKRVGTAASKTRGMVSGSTRKLFRQKGTGNARAGSV 78
Query: 176 RGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKF 235
+ P +GG + GP PRS+ IK+ KKVR+L LK+ALSA+ ++ +L V + LE+ KTK
Sbjct: 79 KSPLRKGGGVIFGPSPRSYEIKVPKKVRKLALKMALSAKFSDSQLFVVDALELEEIKTKA 138
Query: 236 IVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRD 295
+ N + ++ +++ D KL L+++N+ V V+ + GLNVY IL+ L++
Sbjct: 139 LANVLSTLKLNDLLIVSDAD--DAKLALSSRNIPDVKVIKTEGLNVYDILKFKNLLLVES 196
Query: 296 AVNKIVDRMH 305
++ I R+
Sbjct: 197 SIENIKGRLS 206
>gi|340728366|ref|XP_003402496.1| PREDICTED: 39S ribosomal protein L4, mitochondrial-like [Bombus
terrestris]
Length = 280
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 112/202 (55%), Gaps = 6/202 (2%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L D++ R DIIH +RWQ R TK SEV G GKKPWRQKG G +R
Sbjct: 65 GLVFLHPDIYAASPRIDIIHANIRWQRMYRYVCYAHTKVRSEVRGGGKKPWRQKGLGLSR 124
Query: 172 HGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPS 230
H ++R P +RGG +HGP+ P +H L R GL LS + A+ L + DLE+PS
Sbjct: 125 HSSIRSPLWRGGGVVHGPRSPTTHFYMLPFYTRVAGLTSTLSVKLAQDDLYIVNDLEIPS 184
Query: 231 HKTKFIVNYYNQMENTKKVLLCDGGCIH-EKLKLATQNLHYVNVLPSVGLNVYSILQHDT 289
+K +I + VL D I E + AT + +VN++P GLNVYS+L+H+T
Sbjct: 185 NKPSYIEQLIEERHWGPSVLFVDTDDIMPENISEATDTIKHVNLMPVYGLNVYSMLKHNT 244
Query: 290 LVMSRDAV----NKIVDRMHTP 307
L+++ A +KI+ +H P
Sbjct: 245 LILTERAARLIEDKILYHLHRP 266
>gi|116490659|ref|YP_810203.1| 50S ribosomal protein L4P [Oenococcus oeni PSU-1]
gi|290890075|ref|ZP_06553158.1| hypothetical protein AWRIB429_0548 [Oenococcus oeni AWRIB429]
gi|419758615|ref|ZP_14284930.1| 50S ribosomal protein L4P [Oenococcus oeni AWRIB304]
gi|419857026|ref|ZP_14379740.1| 50S ribosomal protein L4P [Oenococcus oeni AWRIB202]
gi|419858556|ref|ZP_14381227.1| 50S ribosomal protein L4P [Oenococcus oeni DSM 20252 = AWRIB129]
gi|421184449|ref|ZP_15641872.1| 50S ribosomal protein L4P [Oenococcus oeni AWRIB318]
gi|421188644|ref|ZP_15645980.1| 50S ribosomal protein L4P [Oenococcus oeni AWRIB419]
gi|421190661|ref|ZP_15647957.1| 50S ribosomal protein L4P [Oenococcus oeni AWRIB422]
gi|421191370|ref|ZP_15648647.1| 50S ribosomal protein L4P [Oenococcus oeni AWRIB548]
gi|421193984|ref|ZP_15651224.1| 50S ribosomal protein L4P [Oenococcus oeni AWRIB553]
gi|421194245|ref|ZP_15651467.1| 50S ribosomal protein L4P [Oenococcus oeni AWRIB568]
gi|421197175|ref|ZP_15654355.1| 50S ribosomal protein L4P [Oenococcus oeni AWRIB576]
gi|122277157|sp|Q04G84.1|RL4_OENOB RecName: Full=50S ribosomal protein L4
gi|116091384|gb|ABJ56538.1| LSU ribosomal protein L4P [Oenococcus oeni PSU-1]
gi|290480266|gb|EFD88907.1| hypothetical protein AWRIB429_0548 [Oenococcus oeni AWRIB429]
gi|399904643|gb|EJN92096.1| 50S ribosomal protein L4P [Oenococcus oeni AWRIB304]
gi|399964817|gb|EJN99451.1| 50S ribosomal protein L4P [Oenococcus oeni AWRIB419]
gi|399967163|gb|EJO01646.1| 50S ribosomal protein L4P [Oenococcus oeni AWRIB318]
gi|399969431|gb|EJO03771.1| 50S ribosomal protein L4P [Oenococcus oeni AWRIB422]
gi|399970450|gb|EJO04743.1| 50S ribosomal protein L4P [Oenococcus oeni AWRIB553]
gi|399972193|gb|EJO06407.1| 50S ribosomal protein L4P [Oenococcus oeni AWRIB548]
gi|399975689|gb|EJO09725.1| 50S ribosomal protein L4P [Oenococcus oeni AWRIB576]
gi|399978257|gb|EJO12213.1| 50S ribosomal protein L4P [Oenococcus oeni AWRIB568]
gi|410498504|gb|EKP89954.1| 50S ribosomal protein L4P [Oenococcus oeni DSM 20252 = AWRIB129]
gi|410498685|gb|EKP90133.1| 50S ribosomal protein L4P [Oenococcus oeni AWRIB202]
Length = 207
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/189 (39%), Positives = 111/189 (58%), Gaps = 1/189 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + LA +F + + ++ V Q A +QGTHS K S VSG G+KPWRQKGTG AR
Sbjct: 15 GEVELADSIFAIEPNEAVVTDAVLMQRASLRQGTHSVKNRSTVSGGGRKPWRQKGTGNAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+RGG GP PR +A K+N+K RL LK LS + + ++ ++L
Sbjct: 75 QGSIRAPQWRGGAISMGPIPRPYAYKINRKAYRLALKSVLSDKVSAKNFVIIDELNFEKP 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
TK I + N++E TKK LL +E KL+ +NL V V + G+NVY +++ +V
Sbjct: 135 STKAIADSLNKLEATKKTLLVVDDA-NENAKLSARNLPNVQVTTASGVNVYDLVKAQKVV 193
Query: 292 MSRDAVNKI 300
+ + AV ++
Sbjct: 194 IVQSAVKQV 202
>gi|95931441|ref|ZP_01314147.1| ribosomal protein L4/L1e [Desulfuromonas acetoxidans DSM 684]
gi|95132509|gb|EAT14202.1| ribosomal protein L4/L1e [Desulfuromonas acetoxidans DSM 684]
Length = 206
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/181 (40%), Positives = 115/181 (63%), Gaps = 2/181 (1%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
VFD +R ++H +VR+QLA R+QGT + K + V+G GKKP++QKGTG AR GT+ P
Sbjct: 23 VFDAEVRPYLVHDMVRYQLAARRQGTSACKNRAAVAGGGKKPFKQKGTGNARQGTVTAPN 82
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
GG GP PR++A KLN+KV++L L ALS+R E KL V +L++ S TK
Sbjct: 83 HVGGGVAFGPTPRNYAFKLNRKVKKLALCSALSSRFQEQKLTVLSELKLDSISTKSFKQV 142
Query: 240 YNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNK 299
++ E +++ D + +++L+ +NL V VL + G+NVY ++++ LV++ AV +
Sbjct: 143 VDRFELKDALVVIDAA--NPEVELSARNLRNVKVLRADGVNVYDVMKYSNLVLTEGAVEQ 200
Query: 300 I 300
+
Sbjct: 201 L 201
>gi|359410071|ref|ZP_09202536.1| ribosomal protein L4/L1e [Clostridium sp. DL-VIII]
gi|357168955|gb|EHI97129.1| ribosomal protein L4/L1e [Clostridium sp. DL-VIII]
Length = 206
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 125/203 (61%), Gaps = 5/203 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN++ M L VF + + +H+VV LA ++QGT STKT SEV G
Sbjct: 1 MPTVGVFNKEGKKVADMELNESVFAAEVNEYALHQVVVALLANKRQGTQSTKTRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G KPWRQKGTGRAR G++R PQ+ G + PKPR + + + K +R++ +K AL+++ +
Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIKGGIVFAPKPRDYRVSVPKSMRKVAMKSALTSKVQD 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+++V + L + KTK +V +E K +++ +E + + +N+ ++++P+
Sbjct: 121 NQMIVLDSLNFEAPKTKNVVEMLKALEANKALIITAES--NEVVYKSARNIQGISIIPAN 178
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
+NVY +L+++ L++++DAV+KI
Sbjct: 179 NINVYDLLKYEKLIITKDAVSKI 201
>gi|288917231|ref|ZP_06411600.1| ribosomal protein L4/L1e [Frankia sp. EUN1f]
gi|288351422|gb|EFC85630.1| ribosomal protein L4/L1e [Frankia sp. EUN1f]
Length = 247
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 120/213 (56%), Gaps = 6/213 (2%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
D +PV D G + L G VFDVP+ +IH+VV QLA +QGTH TKT EV G
Sbjct: 20 DRTVPVHAPAGGDAGSVELPGAVFDVPLNVPLIHQVVVAQLAAARQGTHDTKTRGEVRGG 79
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KP+RQKGTGRAR G+LR PQF GG +HGPKPR++ + KK++ L+ ALS RA
Sbjct: 80 GRKPYRQKGTGRARQGSLRAPQFTGGGVVHGPKPRNYDQRTPKKMKAAALRGALSDRARN 139
Query: 218 GKLLVFEDL---EVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
++ V L + PS K F + + ++VL+ E+ L+ +N+ V++L
Sbjct: 140 DRVHVVSSLVAGDAPSTKAAF--KALTSLVDARRVLVV-AQRSDEQTWLSLRNVAAVHLL 196
Query: 275 PSVGLNVYSILQHDTLVMSRDAVNKIVDRMHTP 307
LN Y +L D +V + A+ + R P
Sbjct: 197 DPGQLNTYDVLVSDDVVFTEGALAAFLARGSRP 229
>gi|289548390|ref|YP_003473378.1| 50S ribosomal protein L4/L1e [Thermocrinis albus DSM 14484]
gi|289182007|gb|ADC89251.1| ribosomal protein L4/L1e [Thermocrinis albus DSM 14484]
Length = 197
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/190 (42%), Positives = 116/190 (61%), Gaps = 1/190 (0%)
Query: 116 LAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTL 175
L D+F V ++K ++ V+WQLA R+QGTHSTKT +EV+ +G+K QKGTG ARHG
Sbjct: 6 LREDIFGVEVKKHVLWEAVKWQLAARRQGTHSTKTRAEVNYSGRKILPQKGTGNARHGER 65
Query: 176 RGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPS-HKTK 234
P F GG HGPKPR + L KKVR+L L++ALS++A EGK+L+ + +E+ KTK
Sbjct: 66 GAPIFVGGGVAHGPKPRDYYYTLPKKVRKLALRMALSSKAKEGKVLLVDKVEIGEVPKTK 125
Query: 235 FIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSR 294
V + + +L E + + +N+ VLP GLNVY IL D L++ +
Sbjct: 126 KAVEFLKTHNVADQKVLLIVPQKDEVVIKSFRNIPTAKVLPVDGLNVYDILWADWLIIDK 185
Query: 295 DAVNKIVDRM 304
A+ KI +R+
Sbjct: 186 MALGKIYERL 195
>gi|297588192|ref|ZP_06946836.1| ribosomal protein L4/L1 family protein [Finegoldia magna ATCC
53516]
gi|297574881|gb|EFH93601.1| ribosomal protein L4/L1 family protein [Finegoldia magna ATCC
53516]
Length = 207
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/197 (38%), Positives = 120/197 (60%), Gaps = 1/197 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N E+ G + L +F V + + +++ VVR QLA ++QGT S KT SEV G GKK
Sbjct: 4 VQILNQQGENVGELELNEAIFGVDVNEHVVYEVVRNQLANKRQGTQSAKTRSEVRGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+RGG + PKPR ++ + KKVRRL +K L+ + + ++
Sbjct: 64 PWRQKGTGRARQGSIRSPQWRGGGVVFAPKPRDYSYAVPKKVRRLAIKSVLTDKVNDNEM 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + L + + TK V ++ KK L+ + L + +N+ V + + +N
Sbjct: 124 IVLDKLSLDAISTKKAVEVLKNIKADKKALVVVDKN-DDTLYRSFRNIENVAICEARLIN 182
Query: 281 VYSILQHDTLVMSRDAV 297
VY L++++LV++ DAV
Sbjct: 183 VYDCLKYNSLVITTDAV 199
>gi|407642013|ref|YP_006805772.1| 50S ribosomal protein L4 [Nocardia brasiliensis ATCC 700358]
gi|407304897|gb|AFT98797.1| 50S ribosomal protein L4 [Nocardia brasiliensis ATCC 700358]
Length = 224
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/209 (40%), Positives = 121/209 (57%), Gaps = 10/209 (4%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+L +PV + G + L ++FDV ++H+VV QLA +QGTHSTKT EVSG
Sbjct: 9 NLTLPVKEPGGKTNGTVELPAEIFDVTANVALMHQVVTAQLAAARQGTHSTKTRGEVSGG 68
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
GKKP+RQKGTGRAR G+ R PQF GG T+HGP+PR ++ + KK++ L+ ALS RA
Sbjct: 69 GKKPYRQKGTGRARQGSTRAPQFTGGGTVHGPQPRDYSQRTPKKMKAAALRGALSDRARN 128
Query: 218 GKLLVFEDL---EVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKL--ATQNLHYVN 272
++ V +L + PS TK + ++ + KK L+ G E L + NL +V
Sbjct: 129 ERIHVVTELVAGQTPS--TKTAKTFLAELSDRKKFLVVVG---REDLAAWKSVANLEHVQ 183
Query: 273 VLPSVGLNVYSILQHDTLVMSRDAVNKIV 301
+ LN Y +L D +V S +A+N V
Sbjct: 184 PIAPDQLNTYDVLYSDEVVFSVEALNTFV 212
>gi|257125037|ref|YP_003163151.1| 50S ribosomal protein L4 [Leptotrichia buccalis C-1013-b]
gi|257048976|gb|ACV38160.1| ribosomal protein L4/L1e [Leptotrichia buccalis C-1013-b]
Length = 214
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 130/209 (62%), Gaps = 9/209 (4%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+PV N + D G + + DVF + K ++H V+ +LA+ +QG+ STKT +EV G
Sbjct: 1 MPVLNIYKLDGSQAGTIEVNNDVFGIEPNKHVMHEVLVAELAEARQGSASTKTRAEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KP+RQKGTGRAR G+ R P GG +HGPKPR++A K+NKKVR+L LK AL+ + +E
Sbjct: 61 GRKPFRQKGTGRARQGSTRAPHMVGGGVVHGPKPRNYAKKVNKKVRKLALKSALATKISE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQM--ENTKKVLLC--DGGCIHEK--LKLATQNLHYV 271
G ++V +D + KTK +++ + + K++ + D I L L+T+N+ V
Sbjct: 121 GNVIVLDDFALEIPKTKTFIDFAKALNFDGAKQLYVTNDDTDNIDRDYFLYLSTRNIEKV 180
Query: 272 NVLPSVGLNVYSILQHDTLVMSRDAVNKI 300
+ + L++Y +++ D ++++++A+ I
Sbjct: 181 AAINTRDLSIYWLIKQDKVILTKEALATI 209
>gi|257790718|ref|YP_003181324.1| 50S ribosomal protein L4 [Eggerthella lenta DSM 2243]
gi|317488571|ref|ZP_07947116.1| ribosomal protein L4/L1 family protein [Eggerthella sp. 1_3_56FAA]
gi|325832045|ref|ZP_08165142.1| 50S ribosomal protein L4 [Eggerthella sp. HGA1]
gi|257474615|gb|ACV54935.1| ribosomal protein L4/L1e [Eggerthella lenta DSM 2243]
gi|316912313|gb|EFV33877.1| ribosomal protein L4/L1 family protein [Eggerthella sp. 1_3_56FAA]
gi|325486366|gb|EGC88818.1| 50S ribosomal protein L4 [Eggerthella sp. HGA1]
Length = 207
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 117/202 (57%), Gaps = 5/202 (2%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I + + + G LA VF + ++H+VVR Q A +QGTH TKT +V G GKK
Sbjct: 4 IEIKDASGKKAGTADLAASVFGIEPNVPVMHQVVRAQRASWRQGTHDTKTRGQVRGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR GT+R PQ+ GG T+ GP PRS+A ++N K +L ++ ALSA+ A+G+L
Sbjct: 64 PWRQKGTGRARQGTIRAPQWAGGGTVFGPHPRSYAFRVNNKEVKLAMRSALSAKLADGEL 123
Query: 221 LVFE--DLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
V + + E PS K +E + L+ D ++ L +N+ VN+LP
Sbjct: 124 FVVDAFNFEKPSTKAAVAALKALGLER-RTTLVIDDEDVNTYLSF--RNIPTVNILPVSA 180
Query: 279 LNVYSILQHDTLVMSRDAVNKI 300
N Y ++ + LV + DA+ +I
Sbjct: 181 ANTYELIDNKALVFTADALKRI 202
>gi|253580620|ref|ZP_04857884.1| 50S ribosomal protein L4/L1 [Ruminococcus sp. 5_1_39B_FAA]
gi|251847991|gb|EES75957.1| 50S ribosomal protein L4/L1 [Ruminococcus sp. 5_1_39BFAA]
Length = 206
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 116/200 (58%), Gaps = 2/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N + G M L VF V + + ++H V QLA +QGT KT SEVSG G+K
Sbjct: 4 VTVYNMEGNEVGTMELNDAVFGVEVNEHLVHLAVVRQLANNRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G++R PQ+ GG + P PR + +K+NKK RR LK AL+++ + KL
Sbjct: 64 PWRQKGTGHARQGSIRAPQWTGGGVVFAPVPRDYEVKMNKKERRAALKSALTSKVQDNKL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + L + KTK + ++ K +++ + + L+ +N+ V +N
Sbjct: 124 VVVDALTLADVKTKEMQKVLTNLKAEKALVIT--ATDDKNVILSARNITDVQTATPSTIN 181
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY ++ H+T+++++DAV I
Sbjct: 182 VYDVMNHNTVIVTKDAVASI 201
>gi|225571553|ref|ZP_03780549.1| hypothetical protein CLOHYLEM_07651 [Clostridium hylemonae DSM
15053]
gi|225159630|gb|EEG72249.1| hypothetical protein CLOHYLEM_07651 [Clostridium hylemonae DSM
15053]
Length = 206
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 118/200 (59%), Gaps = 2/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G + L VF V + + ++H V QLA ++QGT KT SEVSG G+K
Sbjct: 4 VSVYNIEGKEVGTIDLNDAVFGVEVNEHLVHMAVVSQLANKRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ GG + P PR ++ K+NKK +R LK AL+ + E K
Sbjct: 64 PWRQKGTGHARQGSTRAPQWTGGGVVFAPTPRDYSFKMNKKEKRAALKSALTTKVEEKKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V +++ KTK N ++ +K +++ + G + +L+ +N+ V + +N
Sbjct: 124 IVVDEIAFDEIKTKNFANVLKNLDVSKALVVLEDGNTN--AELSARNIADVKTAKTNTIN 181
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY IL+++T++ ++ AV I
Sbjct: 182 VYDILKYNTVIATKAAVANI 201
>gi|194213187|ref|XP_001493119.2| PREDICTED: 39S ribosomal protein L4, mitochondrial-like [Equus
caballus]
Length = 326
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/213 (39%), Positives = 120/213 (56%), Gaps = 7/213 (3%)
Query: 97 QDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSG 156
Q V + + E G L DVF R DI+H+V WQ ++ TKT +EV G
Sbjct: 95 QAWVESLRGYEQERVGLTELHPDVFAAAPRLDILHQVAIWQKNFKRISYAKTKTRAEVRG 154
Query: 157 TGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARA 215
G+KPW QKG+GRARHG++R P +RGG HGP+ P S+ L KVR GLK+ALS +
Sbjct: 155 GGRKPWPQKGSGRARHGSIRSPIWRGGGIAHGPRGPTSYYYMLPMKVRVQGLKVALSVKL 214
Query: 216 AEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLK----LATQNLHYV 271
A+ L V + LE+PS + +++ VLL D HE + AT L
Sbjct: 215 AQDDLHVVDSLELPSAEPQYLAELARYRRWGDSVLLVD--LEHEDMPPSIVAATSCLKTF 272
Query: 272 NVLPSVGLNVYSILQHDTLVMSRDAVNKIVDRM 304
N++P++GLNV+S+L+H TLV++ V + D++
Sbjct: 273 NLVPAIGLNVHSMLKHQTLVLTLRTVAFLEDKL 305
>gi|167767802|ref|ZP_02439855.1| hypothetical protein CLOSS21_02337 [Clostridium sp. SS2/1]
gi|317497094|ref|ZP_07955421.1| ribosomal protein L4/L1 family protein [Lachnospiraceae bacterium
5_1_63FAA]
gi|429762505|ref|ZP_19294894.1| 50S ribosomal protein L4 [Anaerostipes hadrus DSM 3319]
gi|167710541|gb|EDS21120.1| 50S ribosomal protein L4 [Clostridium sp. SS2/1]
gi|291558861|emb|CBL37661.1| LSU ribosomal protein L4P [butyrate-producing bacterium SSC/2]
gi|316895639|gb|EFV17794.1| ribosomal protein L4/L1 family protein [Lachnospiraceae bacterium
5_1_63FAA]
gi|429181495|gb|EKY22654.1| 50S ribosomal protein L4 [Anaerostipes hadrus DSM 3319]
Length = 206
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 119/200 (59%), Gaps = 2/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ + L ++F V I + ++H V QLA +QGT KT SEV G G+K
Sbjct: 4 VSVLNMEGKEVEKLELNDNIFGVEINEHLVHLAVVSQLANNRQGTQKAKTRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G++R PQ++GG + P PR + KLNKK RR+ LK AL++R K
Sbjct: 64 PWRQKGTGHARQGSIRAPQWKGGGVVFAPTPREYTKKLNKKERRIALKSALTSRVQADKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V ++ + KTK + + + K +++ G ++ L L+ +NL V + +N
Sbjct: 124 VVIDEFKFDEIKTKNVKAMLDSVGAKKALVVM--GSKNDNLVLSARNLPGVKTALTSTIN 181
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY IL++DT+V+S++AV I
Sbjct: 182 VYDILKYDTVVVSKEAVANI 201
>gi|164686528|ref|ZP_02210556.1| hypothetical protein CLOBAR_00095 [Clostridium bartlettii DSM
16795]
gi|164604397|gb|EDQ97862.1| 50S ribosomal protein L4 [Clostridium bartlettii DSM 16795]
Length = 207
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 117/198 (59%), Gaps = 1/198 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V N ++ G + L+ VF V + + +++ VV+ QLA ++QGT S KT +EV G G+KPW
Sbjct: 6 VLNIQGQNVGEIELSDAVFGVEVNEHVLYEVVKNQLANKRQGTQSAKTRAEVRGGGRKPW 65
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQKGTGRAR G++R Q+ GG PKPRS+ L KKVRRL +K AL+++ +++V
Sbjct: 66 RQKGTGRARQGSIRAVQWIGGGVAFAPKPRSYRYTLPKKVRRLAMKSALTSKVQANEMIV 125
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
+ L + + KTK N + KK L+ +K A N+ V +NVY
Sbjct: 126 LDALTMDAPKTKEFATILNNVNAAKKALVVMAEKNENVIKSAA-NIPNVETALVNTINVY 184
Query: 283 SILQHDTLVMSRDAVNKI 300
IL++D+ +++ DAV K+
Sbjct: 185 DILKYDSFIITTDAVKKV 202
>gi|422933529|ref|ZP_16966449.1| 50S ribosomal protein L4 [Fusobacterium nucleatum subsp. animalis
ATCC 51191]
gi|339891570|gb|EGQ80531.1| 50S ribosomal protein L4 [Fusobacterium nucleatum subsp. animalis
ATCC 51191]
Length = 209
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 120/199 (60%), Gaps = 1/199 (0%)
Query: 100 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
V+ + N E G + + VF + K ++H V+ +LA +QGT STKT + V G G+
Sbjct: 3 VLNIYNLAGEQTGTVEVNDAVFGIEPNKVVLHEVLTAELAAARQGTASTKTRAMVRGGGR 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
KP++QKGTGRAR GT+R P GG GP PRS+ K+NKKVR L L+ ALSA+ A G
Sbjct: 63 KPFKQKGTGRARQGTIRAPHMVGGGVTFGPHPRSYEKKVNKKVRNLALRSALSAKVAAGN 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHE-KLKLATQNLHYVNVLPSVG 278
+LV + + + KTK IVN N+++ +K L G I + L L+ +NL +L
Sbjct: 123 ILVLDYDGIETPKTKVIVNLVNKVDAKQKQLFVVGDLIKDYNLYLSARNLENAVILQPNE 182
Query: 279 LNVYSILQHDTLVMSRDAV 297
+ VY +L+ + ++++++A+
Sbjct: 183 IGVYWLLKQEKVILTKEAL 201
>gi|302390959|ref|YP_003826779.1| 50S ribosomal protein L4P [Acetohalobium arabaticum DSM 5501]
gi|302203036|gb|ADL11714.1| LSU ribosomal protein L4P [Acetohalobium arabaticum DSM 5501]
Length = 209
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 115/189 (60%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +FDV I + ++H V QLA ++ GT STKT +EV G G+KPWRQKGTGRAR
Sbjct: 15 GEVELNQSIFDVEINEHVVHEAVTAQLAAKRAGTASTKTRAEVRGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG++R P + GG T GP+PR ++ + KKV+RL +K AL+A+ + +L V +
Sbjct: 75 HGSIRSPIWVGGGTTFGPQPRDYSKDIPKKVKRLAVKSALTAKVQDEELTVVDGFNFDQP 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KTK +V ++ K +L + L + +N+ V VL +NVY +L ++ ++
Sbjct: 135 KTKQMVKVLEALDAKDKKVLVITAEKDDNLYKSARNIPDVKVLLGSAVNVYDVLDNEQII 194
Query: 292 MSRDAVNKI 300
++++A+ K+
Sbjct: 195 ITKEAIKKV 203
>gi|315655880|ref|ZP_07908778.1| 50S ribosomal protein L4 [Mobiluncus curtisii ATCC 51333]
gi|315489944|gb|EFU79571.1| 50S ribosomal protein L4 [Mobiluncus curtisii ATCC 51333]
Length = 214
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/195 (40%), Positives = 116/195 (59%), Gaps = 5/195 (2%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L G+VFD+ ++H+VV QLA +QGTH+TKT +VSG GKKPWRQKGTGRAR
Sbjct: 18 GTVELPGEVFDLDFNNPLVHQVVNAQLAAARQGTHATKTRGDVSGGGKKPWRQKGTGRAR 77
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL---EV 228
G++R PQF GG T+HGP+PR ++ KK++ L+ ALS RA G++ V D E
Sbjct: 78 QGSIRAPQFTGGGTVHGPQPRDYSQNTPKKMKAAALRQALSDRARAGRIHVLSDFGVKET 137
Query: 229 PSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHD 288
PS TK + ++++ L+ + + + L+ NL + L LN Y +L +D
Sbjct: 138 PS--TKVAKAALQGVVDSRRALIVLTPEVDDVVALSVNNLSEHHALFVGELNTYDVLAND 195
Query: 289 TLVMSRDAVNKIVDR 303
+V S A++ + +
Sbjct: 196 DVVFSATALDSFLGK 210
>gi|332018616|gb|EGI59197.1| 39S ribosomal protein L4, mitochondrial [Acromyrmex echinatior]
Length = 286
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 114/203 (56%), Gaps = 3/203 (1%)
Query: 105 NFFNEDK-GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWR 163
N E K G + L ++ R DIIH+ +RWQ R TKT +EV G G+KPW
Sbjct: 63 NTIEEKKLGLVTLHPHIYAAAPRIDIIHQNIRWQRMYRWVSYAHTKTRAEVRGGGRKPWP 122
Query: 164 QKGTGRARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
QKGTGRARHG++R P +RGG HGP+ P H L R GL LS + A+ L +
Sbjct: 123 QKGTGRARHGSIRSPLWRGGGVAHGPRSPTPHFYMLPFYTRIAGLTATLSVKLAQDDLHI 182
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIH-EKLKLATQNLHYVNVLPSVGLNV 281
++LE+P+ + ++ + +LL D I + LAT + +VN++P GLNV
Sbjct: 183 VDELEIPTSEPSYVEQLIEERNWGPSILLVDSYDIMPTNITLATDKIKHVNIMPVYGLNV 242
Query: 282 YSILQHDTLVMSRDAVNKIVDRM 304
YS+L+H+TLV++ A I +++
Sbjct: 243 YSMLKHNTLVLTEKAARLIEEKL 265
>gi|169350796|ref|ZP_02867734.1| hypothetical protein CLOSPI_01570 [Clostridium spiroforme DSM 1552]
gi|169292382|gb|EDS74515.1| 50S ribosomal protein L4 [Clostridium spiroforme DSM 1552]
Length = 207
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/182 (41%), Positives = 110/182 (60%), Gaps = 3/182 (1%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
VF + K + +V Q A +QGTH K +EVSG GKKPWRQKGTGRAR G++R PQ
Sbjct: 23 VFGIEPNKQALFDMVLLQRASLRQGTHKVKNRTEVSGGGKKPWRQKGTGRARQGSIRAPQ 82
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
+RGG + GP PRS+ KLN+KVRRL LK ALS + + + + E ++ + KTK +V
Sbjct: 83 WRGGGVVFGPTPRSYKFKLNRKVRRLALKSALSTKIIDNEFMALEAIKFDAPKTKEMVKV 142
Query: 240 YNQMEN-TKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVN 298
++ TK +++ D I E + + N+ V +L + +NVY IL D L+M+ A+
Sbjct: 143 LANLDAPTKTLIVVD--EIDENVARSANNIPGVKLLDARRVNVYDILNSDKLIMTEAAIK 200
Query: 299 KI 300
+
Sbjct: 201 SV 202
>gi|433645835|ref|YP_007290837.1| LSU ribosomal protein L4P [Mycobacterium smegmatis JS623]
gi|433295612|gb|AGB21432.1| LSU ribosomal protein L4P [Mycobacterium smegmatis JS623]
Length = 231
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 120/204 (58%), Gaps = 2/204 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
L I V + G + L ++FDV ++H+VV QLA ++QGTHSTKT EV G G
Sbjct: 6 LKIDVNTPAGKKDGSVELPAELFDVEPNIALMHQVVEAQLAAKRQGTHSTKTRGEVRGGG 65
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KKP+RQKGTGRAR G+ R PQF GG T+HGP+PR ++ + KK+ L+ ALS RA G
Sbjct: 66 KKPYRQKGTGRARQGSTRAPQFTGGGTVHGPQPRDYSQRTPKKMIAAALRGALSDRARNG 125
Query: 219 KL-LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++ V E +E + TK + + K+VL+ G E L+ +NL V++L
Sbjct: 126 RIHAVTELVEGQTPSTKSAKAFLATLTENKQVLVVIGRA-DETGALSARNLPGVHILSPD 184
Query: 278 GLNVYSILQHDTLVMSRDAVNKIV 301
LN Y +L+ D +V S +A+N +
Sbjct: 185 QLNTYDVLKADDVVFSVEALNDYI 208
>gi|237743900|ref|ZP_04574381.1| LSU ribosomal protein L1E [Fusobacterium sp. 7_1]
gi|260495202|ref|ZP_05815330.1| ribosomal protein L4/L1 [Fusobacterium sp. 3_1_33]
gi|289765451|ref|ZP_06524829.1| LSU ribosomal protein L1E [Fusobacterium sp. D11]
gi|336400121|ref|ZP_08580909.1| 50S ribosomal protein L4 [Fusobacterium sp. 21_1A]
gi|423138098|ref|ZP_17125741.1| 50S ribosomal protein L4 [Fusobacterium nucleatum subsp. animalis
F0419]
gi|229432931|gb|EEO43143.1| LSU ribosomal protein L1E [Fusobacterium sp. 7_1]
gi|260197259|gb|EEW94778.1| ribosomal protein L4/L1 [Fusobacterium sp. 3_1_33]
gi|289717006|gb|EFD81018.1| LSU ribosomal protein L1E [Fusobacterium sp. D11]
gi|336163318|gb|EGN66250.1| 50S ribosomal protein L4 [Fusobacterium sp. 21_1A]
gi|371958660|gb|EHO76369.1| 50S ribosomal protein L4 [Fusobacterium nucleatum subsp. animalis
F0419]
Length = 209
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 120/199 (60%), Gaps = 1/199 (0%)
Query: 100 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
V+ + N E G + + VF + K ++H V+ +LA +QGT STKT + V G G+
Sbjct: 3 VLNIYNLAGEQTGTVEVNDAVFGIEPNKVVLHEVLTAELAAARQGTASTKTRAMVRGGGR 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
KP++QKGTGRAR GT+R P GG GP PRS+ K+NKKVR L L+ ALSA+ A G
Sbjct: 63 KPFKQKGTGRARQGTIRAPHMVGGGVTFGPHPRSYEKKVNKKVRNLALRSALSAKVAAGN 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHE-KLKLATQNLHYVNVLPSVG 278
+LV + + + KTK IVN N+++ +K L G I + L L+ +NL +L
Sbjct: 123 ILVLDYDGIETPKTKVIVNLVNKVDAKQKQLFVVGDLIKDYNLYLSARNLENAVILQPNE 182
Query: 279 LNVYSILQHDTLVMSRDAV 297
+ VY +L+ + ++++++A+
Sbjct: 183 IGVYWLLKQEKVILTKEAL 201
>gi|153854971|ref|ZP_01996184.1| hypothetical protein DORLON_02190 [Dorea longicatena DSM 13814]
gi|149752468|gb|EDM62399.1| 50S ribosomal protein L4 [Dorea longicatena DSM 13814]
Length = 206
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 119/200 (59%), Gaps = 2/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G + L+ VF V + + ++H V QLA +QGT KT SEVSG G+K
Sbjct: 4 VSVYNIEGKEVGKIDLSDAVFGVEVNEHLVHMAVVSQLANNRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ GG + P PR ++ K+NK+ +R LK AL++R E K
Sbjct: 64 PWRQKGTGHARQGSTRAPQWTGGGVVFAPVPRDYSFKMNKREKRAALKSALTSRVEENKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V +++ KTK N ++ +K +++ + ++ +L+ +N+ V + +N
Sbjct: 124 IVIDEINFEEAKTKNFANILKNLDVSKALVVLEDD--NKNAELSARNIADVKTAKTNTIN 181
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY IL+++T++ ++ V KI
Sbjct: 182 VYDILKYNTVITTKAVVAKI 201
>gi|225387236|ref|ZP_03757000.1| hypothetical protein CLOSTASPAR_00988 [Clostridium asparagiforme
DSM 15981]
gi|225046654|gb|EEG56900.1| hypothetical protein CLOSTASPAR_00988 [Clostridium asparagiforme
DSM 15981]
Length = 206
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 116/201 (57%), Gaps = 4/201 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G M L VF V + + ++H V QLA ++QGT KT SEVSG G+K
Sbjct: 4 VSVYNMEGKEVGSMELNDAVFGVEVNEHLVHLAVVAQLANKRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ++GG + P PR + I LNKK +R LK AL++R GK
Sbjct: 64 PWRQKGTGHARQGSTRSPQWKGGGVVFAPVPRDYTITLNKKEKRAALKSALTSRVQGGKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQME-NTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGL 279
+V ++L+ KTK N + ++ N V+L D + L+ +N+ V +
Sbjct: 124 IVVDELKFDEIKTKKFQNVMDNLKVNKALVVLADN---DQNAVLSARNIADVKTTQVNTM 180
Query: 280 NVYSILQHDTLVMSRDAVNKI 300
NVY IL++ T+V ++ AV I
Sbjct: 181 NVYDILKYSTVVATKAAVATI 201
>gi|336419086|ref|ZP_08599353.1| ribosomal protein L4/L1 family protein [Fusobacterium sp. 11_3_2]
gi|336164091|gb|EGN67003.1| ribosomal protein L4/L1 family protein [Fusobacterium sp. 11_3_2]
Length = 209
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 120/199 (60%), Gaps = 1/199 (0%)
Query: 100 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
V+ + N E G + + VF + K ++H V+ +LA +QGT STKT + V G G+
Sbjct: 3 VLNIYNLAGEQTGTVEVNDAVFGIKPNKVVLHEVLTAELAAARQGTASTKTRAMVRGGGR 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
KP++QKGTGRAR GT+R P GG GP PRS+ K+NKKVR L L+ ALSA+ A G
Sbjct: 63 KPFKQKGTGRARQGTIRAPHMVGGGVTFGPHPRSYEKKVNKKVRNLALRSALSAKVAAGN 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHE-KLKLATQNLHYVNVLPSVG 278
+LV + + + KTK IVN N+++ +K L G I + L L+ +NL +L
Sbjct: 123 ILVLDYDGIETPKTKVIVNLVNKVDAKQKQLFVVGDLIKDYNLYLSARNLENAVILQPNE 182
Query: 279 LNVYSILQHDTLVMSRDAV 297
+ VY +L+ + ++++++A+
Sbjct: 183 IGVYWLLKQEKVILTKEAL 201
>gi|291532094|emb|CBK97679.1| LSU ribosomal protein L4P [Eubacterium siraeum 70/3]
gi|291558165|emb|CBL35282.1| LSU ribosomal protein L4P [Eubacterium siraeum V10Sc8a]
Length = 206
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/185 (41%), Positives = 110/185 (59%), Gaps = 2/185 (1%)
Query: 116 LAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTL 175
L ++F + ++H V LA ++QGT ST T +EVSG GKKPWRQKGTG AR G+
Sbjct: 19 LNDNIFGIEPNTVVMHAAVVNYLANQRQGTQSTLTRTEVSGGGKKPWRQKGTGHARQGST 78
Query: 176 RGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKF 235
R PQ+ G GPKPRS+ LNKKV+RL LK ALSA+ +G ++V + + KTK
Sbjct: 79 RAPQWTHGGVALGPKPRSYTYSLNKKVKRLALKSALSAKVQDGSMIVVDSITADEFKTKT 138
Query: 236 IVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRD 295
IVN + K +++ + + EK+ + N+ V + LNVY IL+++ ++ +D
Sbjct: 139 IVNMLKALSADKALIVLN--SVDEKVIKSAANIPGVKTTQANTLNVYDILKYNKFIVVKD 196
Query: 296 AVNKI 300
AV I
Sbjct: 197 AVATI 201
>gi|227879244|ref|ZP_03997114.1| 50S ribosomal protein L4 [Lactobacillus crispatus JV-V01]
gi|256849182|ref|ZP_05554615.1| 50S ribosomal protein L4 [Lactobacillus crispatus MV-1A-US]
gi|262047198|ref|ZP_06020156.1| 50S ribosomal protein L4/L1 [Lactobacillus crispatus MV-3A-US]
gi|293380378|ref|ZP_06626449.1| 50S ribosomal protein L4 [Lactobacillus crispatus 214-1]
gi|295692161|ref|YP_003600771.1| 50S ribosomal protein l4 [Lactobacillus crispatus ST1]
gi|423319621|ref|ZP_17297496.1| 50S ribosomal protein L4 [Lactobacillus crispatus FB049-03]
gi|423320357|ref|ZP_17298229.1| 50S ribosomal protein L4 [Lactobacillus crispatus FB077-07]
gi|227861138|gb|EEJ68787.1| 50S ribosomal protein L4 [Lactobacillus crispatus JV-V01]
gi|256713958|gb|EEU28946.1| 50S ribosomal protein L4 [Lactobacillus crispatus MV-1A-US]
gi|260572443|gb|EEX29005.1| 50S ribosomal protein L4/L1 [Lactobacillus crispatus MV-3A-US]
gi|290923061|gb|EFD99992.1| 50S ribosomal protein L4 [Lactobacillus crispatus 214-1]
gi|295030267|emb|CBL49746.1| 50S ribosomal protein L4 [Lactobacillus crispatus ST1]
gi|405587914|gb|EKB61635.1| 50S ribosomal protein L4 [Lactobacillus crispatus FB049-03]
gi|405606007|gb|EKB79004.1| 50S ribosomal protein L4 [Lactobacillus crispatus FB077-07]
Length = 205
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 116/200 (58%), Gaps = 3/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + +D G + L VF + + ++ + Q A ++QGT K S V G GKK
Sbjct: 4 LKVMDQNGKDSGEVTLNDKVFGIEPNESVVFEAIIRQRAGKRQGTSKVKNRSAVRGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+RGG T+ GP PRS+A + +K RRL +K LS + + L
Sbjct: 64 PWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYAYTMPRKQRRLAIKSVLSQKLIDNDL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + L + + KTK +V+ N + KVL+ ++L+ +NL V V+P GLN
Sbjct: 124 IVLDKLTMSAPKTKELVSMLNGLNADGKVLIV---SDDNNVQLSARNLTKVKVVPVNGLN 180
Query: 281 VYSILQHDTLVMSRDAVNKI 300
V + + L++ +DAV KI
Sbjct: 181 VEDAVNYGKLILDQDAVKKI 200
>gi|418323019|ref|ZP_12934320.1| 50S ribosomal protein L4 [Staphylococcus pettenkoferi VCU012]
gi|365230673|gb|EHM71759.1| 50S ribosomal protein L4 [Staphylococcus pettenkoferi VCU012]
Length = 207
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 77/190 (40%), Positives = 112/190 (58%), Gaps = 3/190 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L VF + D++ + Q A +QGTHS K SEV G G+KPWRQKGTGRAR
Sbjct: 15 GSVELNDAVFAIEPNNDVLFEAINLQRASLRQGTHSVKNRSEVRGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
GT+R PQ+RGG + GP PRS++ K+ KK+RRL L+ ALS + E V + +
Sbjct: 75 QGTIRAPQWRGGGIVFGPTPRSYSYKMPKKMRRLALRSALSYKVQENGFTVVDAFNFDAP 134
Query: 232 KTKFIVNYYNQMENTKKVL-LCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTL 290
KTK N +E KKVL + +G ++ ++L+ +N+ V V + GLNV I D++
Sbjct: 135 KTKEFKNVLTNLEQPKKVLVVVEGEDVN--VELSARNIPGVQVTTAEGLNVLDISSADSV 192
Query: 291 VMSRDAVNKI 300
+++ A K+
Sbjct: 193 IITEAAAKKV 202
>gi|334139102|ref|ZP_08512499.1| 50S ribosomal protein L4 [Paenibacillus sp. HGF7]
gi|333603067|gb|EGL14490.1| 50S ribosomal protein L4 [Paenibacillus sp. HGF7]
Length = 208
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 117/200 (58%), Gaps = 1/200 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N G + L+ VF + +H V Q A +QGTH K SEV G G+K
Sbjct: 4 VALYNVSGTQVGEVELSDVVFGIEPHVHALHEAVLLQQASVRQGTHKVKGRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G++R PQ++GG + GP PRS+ KL KKVRRL +K ALS++ + +
Sbjct: 64 PWKQKGTGRARQGSIRAPQWKGGGVVFGPTPRSYGYKLPKKVRRLAIKSALSSKVIDNDI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + L++ + KTK V + +K L+ + + L+ +N+ V + + G+N
Sbjct: 124 IVLDQLQMNAPKTKEFVAILKNLNVERKALVV-AASYEDNVALSARNIPGVKFVVADGIN 182
Query: 281 VYSILQHDTLVMSRDAVNKI 300
V ++ HD L++++DAV K+
Sbjct: 183 VLDVMVHDKLIITKDAVQKV 202
>gi|329770039|ref|ZP_08261434.1| 50S ribosomal protein L4 [Gemella sanguinis M325]
gi|328837350|gb|EGF86980.1| 50S ribosomal protein L4 [Gemella sanguinis M325]
Length = 207
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/203 (39%), Positives = 120/203 (59%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNED--KGFMVLAGD-VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + F +D K V A D VF + + ++ + V Q A +QGTH TK SEVSG
Sbjct: 1 MPQLDLFKQDGTKVGAVEANDAVFGIEPNQHVLFQAVTLQRASLRQGTHKTKGRSEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ K+ +K+RRL L+ ALS++ A
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSFKMPRKMRRLALRSALSSKVAA 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++ E L + KTK + + KKVL + E L+ +N+ V + +
Sbjct: 121 NEVFALETLAFDTIKTKNFKEMLSNLSLEKKVLFVV-TELEENTVLSGRNIPGVEFVETT 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
GLNV IL + +V ++DA+ K+
Sbjct: 180 GLNVLDILGSNKVVFTKDALEKV 202
>gi|256544507|ref|ZP_05471880.1| 50S ribosomal protein L4 [Anaerococcus vaginalis ATCC 51170]
gi|256399832|gb|EEU13436.1| 50S ribosomal protein L4 [Anaerococcus vaginalis ATCC 51170]
Length = 207
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 125/202 (61%), Gaps = 5/202 (2%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N E+ G + L +F I + ++ V+ QLA ++QGT S KT +EV G G+K
Sbjct: 4 VEVLNIKGENVGEIELNETLFAAEIAETAVYDTVKNQLANKRQGTQSAKTRAEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQKGTGRAR G++R P + GG + PKPR ++ K+ KK+RR L L+++ + +L
Sbjct: 64 PFRQKGTGRARQGSIRAPHYTGGGIVFAPKPRDYSYKIPKKMRRKALYSVLTSKVNDNEL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKK--VLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
+V ++L++ S+KTK N + KK V++ + +K+ + +N+ NV +
Sbjct: 124 IVLDELKLDSYKTKEANEILNNINANKKAYVVIAEN---DDKVYRSFRNIEGCNVEKANL 180
Query: 279 LNVYSILQHDTLVMSRDAVNKI 300
+NVY +L+HD LV+++DA+NK+
Sbjct: 181 INVYDLLRHDKLVITKDAINKL 202
>gi|19704965|ref|NP_602460.1| 50S ribosomal protein L4 [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
gi|296329219|ref|ZP_06871720.1| ribosomal protein L4/L1 family protein [Fusobacterium nucleatum
subsp. nucleatum ATCC 23726]
gi|46577280|sp|Q8RIF6.1|RL4_FUSNN RecName: Full=50S ribosomal protein L4
gi|19712867|gb|AAL93759.1| LSU ribosomal protein L1E [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
gi|296153575|gb|EFG94392.1| ribosomal protein L4/L1 family protein [Fusobacterium nucleatum
subsp. nucleatum ATCC 23726]
Length = 209
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 120/199 (60%), Gaps = 1/199 (0%)
Query: 100 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
V+ + N E G + + VF + K ++H V+ +LA +QGT STKT + V G G+
Sbjct: 3 VLNIYNLAGEQTGTVEVNDAVFGIEPNKVVLHEVLTAELAAARQGTASTKTRAMVRGGGR 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
KP++QKGTGRAR GT+R P GG GP PRS+ K+NKKVR L L+ ALSA+ A G
Sbjct: 63 KPFKQKGTGRARQGTIRAPHMVGGGVTFGPHPRSYEKKVNKKVRNLALRSALSAKVAAGN 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHE-KLKLATQNLHYVNVLPSVG 278
+LV + + + KTK IVN N+++ +K L G I + L L+ +NL +L
Sbjct: 123 VLVLDYDGIETPKTKVIVNLVNKVDAKQKQLFVVGDLIKDYNLYLSARNLENAVILQPNE 182
Query: 279 LNVYSILQHDTLVMSRDAV 297
+ VY +L+ + ++++++A+
Sbjct: 183 IGVYWLLKQEKVILTKEAL 201
>gi|380750078|gb|AFE48780.1| 50S ribosomal protein L4 [Staphylococcus pettenkoferi]
Length = 207
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 77/190 (40%), Positives = 112/190 (58%), Gaps = 3/190 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L VF + D++ + Q A +QGTHS K SEV G G+KPWRQKGTGRAR
Sbjct: 15 GSVELNDAVFAIEPNNDVLFEAINLQRASLRQGTHSVKNRSEVRGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
GT+R PQ+RGG + GP PRS++ K+ KK+RRL L+ ALS + E V + +
Sbjct: 75 QGTIRAPQWRGGGIVFGPTPRSYSYKMPKKMRRLALRSALSYKVQENGFTVVDAFNFDAP 134
Query: 232 KTKFIVNYYNQMENTKKVL-LCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTL 290
KTK N +E KKVL + +G ++ ++L+ +N+ V V + GLNV I D++
Sbjct: 135 KTKEFKNVLTNLEQPKKVLVVVEGEDVN--VELSARNIPGVQVTTAEGLNVLDISSADSV 192
Query: 291 VMSRDAVNKI 300
+++ A K+
Sbjct: 193 IITEAAAKKV 202
>gi|166031658|ref|ZP_02234487.1| hypothetical protein DORFOR_01358 [Dorea formicigenerans ATCC
27755]
gi|346307825|ref|ZP_08849955.1| 50S ribosomal protein L4 [Dorea formicigenerans 4_6_53AFAA]
gi|166028635|gb|EDR47392.1| 50S ribosomal protein L4 [Dorea formicigenerans ATCC 27755]
gi|345904783|gb|EGX74527.1| 50S ribosomal protein L4 [Dorea formicigenerans 4_6_53AFAA]
Length = 206
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 118/200 (59%), Gaps = 2/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ + L+ VF V + + ++H V QLA +QGT KT SEVSG G+K
Sbjct: 4 VSVYNIEGKEVETIELSDAVFGVEVNEHLVHMAVVNQLANNRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ GG + P PR ++ K+NKK +R LK AL++R E K
Sbjct: 64 PWRQKGTGHARQGSTRAPQWTGGGVVFAPVPRDYSFKMNKKEKRAALKSALTSRVEENKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + L KTK + N + +K +++ + G ++ +L+ +N+ V + +N
Sbjct: 124 IVVDSLTFDEIKTKNVANALKNLNVSKALVVLEDGNVN--AELSAKNIAGVKTAKTNTIN 181
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY +++++T++ ++ AV I
Sbjct: 182 VYDVMKYNTVIATKAAVKAI 201
>gi|443673934|ref|ZP_21138980.1| 50S ribosomal protein L4 [Rhodococcus sp. AW25M09]
gi|443413534|emb|CCQ17318.1| 50S ribosomal protein L4 [Rhodococcus sp. AW25M09]
Length = 225
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 86/206 (41%), Positives = 120/206 (58%), Gaps = 6/206 (2%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
L + V + G + L ++FD P ++H+VV QLA +QGTHSTKT EV G G
Sbjct: 12 LTLDVKEAGGKTNGTVDLPAEIFDAPANIALLHQVVIAQLAAARQGTHSTKTRGEVRGGG 71
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KKP+RQKGTGRAR G+ R PQF GG T+HGP+PR ++ + KK++ L+ ALS RA
Sbjct: 72 KKPYRQKGTGRARQGSTRAPQFVGGGTVHGPQPRDYSQRTPKKMKAAALRGALSDRARSE 131
Query: 219 KLLVFEDL---EVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+L V +L +VPS TK + ++ + KKVLL G K + QNL V+ +
Sbjct: 132 RLHVITELVAGQVPS--TKGAKTFLAEISDRKKVLLVVGREDIAAWK-SVQNLDGVHPIA 188
Query: 276 SVGLNVYSILQHDTLVMSRDAVNKIV 301
LN Y +L D +V S +A+N +
Sbjct: 189 PDQLNTYDVLNADDVVFSVEALNTFI 214
>gi|291547983|emb|CBL21091.1| LSU ribosomal protein L4P [Ruminococcus sp. SR1/5]
Length = 206
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 115/200 (57%), Gaps = 2/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N + G M L VF V I + ++H V QLA +QGT KT SEV G G+K
Sbjct: 4 VTVYNMEGNEVGTMELNDAVFGVEINEHLVHLAVVRQLANNRQGTQKAKTRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G++R PQ+ GG + P PR + +K+NKK RR LK AL+++ + KL
Sbjct: 64 PWRQKGTGHARQGSIRAPQWTGGGVVFAPVPRDYEVKMNKKERRAALKSALTSKVQDNKL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + L + KTK + ++ K +++ + + L+ +N+ V +N
Sbjct: 124 VVVDSLALAEVKTKEMQKVLTNLKAEKALVITADN--DQNVVLSARNIADVETATPATIN 181
Query: 281 VYSILQHDTLVMSRDAVNKI 300
Y +++H+T+V+++DAV I
Sbjct: 182 TYDVMKHNTVVVTKDAVASI 201
>gi|194857837|ref|XP_001969044.1| GG24171 [Drosophila erecta]
gi|190660911|gb|EDV58103.1| GG24171 [Drosophila erecta]
Length = 296
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/201 (39%), Positives = 114/201 (56%), Gaps = 2/201 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L D+F R DII V WQ R TKT +EV G G+KPW QKG GRAR
Sbjct: 81 GLIELHPDIFAAQPRVDIIQENVEWQRKYRYVSMAHTKTRAEVRGGGRKPWPQKGGGRAR 140
Query: 172 HGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPS 230
HG+LR P +GG +HGP+ P +H L R LGL LS + A+ L + E +++P+
Sbjct: 141 HGSLRSPMLKGGGVVHGPRSPTTHFYMLPFYKRVLGLTSTLSVKLAQDDLHIIESVDIPT 200
Query: 231 HKTKFIVNYYNQMENTKKVLLCDGGCIH-EKLKLATQNLHYVNVLPSVGLNVYSILQHDT 289
+F+ + + VL+ D + + A+ +L YVN++P+ GLNVYS+L+HDT
Sbjct: 201 GDAEFLKDLIAERNWGPSVLIVDEDHMFPANICQASDDLGYVNLMPTFGLNVYSMLKHDT 260
Query: 290 LVMSRDAVNKIVDRMHTPINR 310
LV++ AV + R+ +NR
Sbjct: 261 LVLTVAAVKHLEQRLLYQLNR 281
>gi|421526107|ref|ZP_15972716.1| 50S ribosomal protein L4 [Fusobacterium nucleatum ChDC F128]
gi|402257866|gb|EJU08339.1| 50S ribosomal protein L4 [Fusobacterium nucleatum ChDC F128]
Length = 209
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 120/199 (60%), Gaps = 1/199 (0%)
Query: 100 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
V+ + N E G + + VF + K ++H V+ +LA +QGT STKT + V G G+
Sbjct: 3 VLNIYNLAGEQTGTVEVKDTVFGIEPNKVVLHEVLTAELAAARQGTASTKTRAMVRGGGR 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
KP++QKGTGRAR G++R P GG GP PRS+ K+NKKVR L LK ALSA+ A G
Sbjct: 63 KPFKQKGTGRARQGSIRAPHMVGGGVTFGPHPRSYEKKVNKKVRNLALKSALSAKVAAGN 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHE-KLKLATQNLHYVNVLPSVG 278
+LV + + + KTK IVN N+++ +K L G I + L L+ +NL +L
Sbjct: 123 VLVLDYDVIETPKTKVIVNLVNKVDAKQKQLFVVGDLIKDYNLYLSARNLENAVILQPNE 182
Query: 279 LNVYSILQHDTLVMSRDAV 297
+ VY +L+ + ++++++A+
Sbjct: 183 IGVYWLLKQEKVILTKEAL 201
>gi|393771117|ref|ZP_10359592.1| 50S ribosomal protein L4 [Novosphingobium sp. Rr 2-17]
gi|392723481|gb|EIZ80871.1| 50S ribosomal protein L4 [Novosphingobium sp. Rr 2-17]
Length = 211
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 88/193 (45%), Positives = 122/193 (63%), Gaps = 4/193 (2%)
Query: 116 LAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTL 175
L+ DVF + R DI+HRVV WQL R+ +T+ S+V+ TGKK +QKG G ARHG
Sbjct: 19 LSDDVFGIEPRADILHRVVTWQLENRRGIARATRERSDVARTGKKFGKQKGGGTARHGDR 78
Query: 176 RGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARA---AEGKLLVFEDLEVPSHK 232
P F GG HG + R + LNKK+R LGLK+ALS++A A KL+V + L+V K
Sbjct: 79 AAPVFIGGGKAHGARRREFDVSLNKKIRALGLKMALSSKAQGVAGVKLVVIDSLDVDG-K 137
Query: 233 TKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVM 292
TK +V + KK+L+ DG +++ A +N+ VNVLP++G NVY IL+HDTLV+
Sbjct: 138 TKALVGQLAKANFGKKILVIDGEAVNDNFARAARNIVGVNVLPAIGANVYDILKHDTLVL 197
Query: 293 SRDAVNKIVDRMH 305
+R AV K+ R +
Sbjct: 198 TRAAVEKLEARFN 210
>gi|298345471|ref|YP_003718158.1| 50S ribosomal protein L4 [Mobiluncus curtisii ATCC 43063]
gi|315656194|ref|ZP_07909085.1| 50S ribosomal protein L4 [Mobiluncus curtisii subsp. holmesii ATCC
35242]
gi|298235532|gb|ADI66664.1| 50S ribosomal protein L4 [Mobiluncus curtisii ATCC 43063]
gi|315493196|gb|EFU82796.1| 50S ribosomal protein L4 [Mobiluncus curtisii subsp. holmesii ATCC
35242]
Length = 214
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 78/195 (40%), Positives = 116/195 (59%), Gaps = 5/195 (2%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L G+VFD+ ++H+VV QLA +QGTH+TKT +VSG GKKPWRQKGTGRAR
Sbjct: 18 GTVELPGEVFDLDFNNPLVHQVVNAQLAAARQGTHATKTRGDVSGGGKKPWRQKGTGRAR 77
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL---EV 228
G++R PQF GG T+HGP+PR ++ KK++ L+ ALS RA G++ V D E
Sbjct: 78 QGSIRAPQFTGGGTVHGPQPRDYSQNTPKKMKAAALRQALSDRARAGRIHVLSDFGVKET 137
Query: 229 PSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHD 288
PS TK + ++++ L+ + + + L+ NL + L LN Y +L +D
Sbjct: 138 PS--TKAAKAALQGVVDSRRALIVLTPEVDDVVALSVNNLSEHHALFVGELNTYDVLAND 195
Query: 289 TLVMSRDAVNKIVDR 303
+V S A++ + +
Sbjct: 196 DVVFSATALDSFLGK 210
>gi|167749438|ref|ZP_02421565.1| hypothetical protein EUBSIR_00392 [Eubacterium siraeum DSM 15702]
gi|167657610|gb|EDS01740.1| 50S ribosomal protein L4 [Eubacterium siraeum DSM 15702]
Length = 206
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 76/185 (41%), Positives = 110/185 (59%), Gaps = 2/185 (1%)
Query: 116 LAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTL 175
L ++F + ++H V LA ++QGT ST T +EVSG GKKPWRQKGTG AR G+
Sbjct: 19 LNDNIFGIEPNTVVMHAAVVNYLANQRQGTQSTLTRTEVSGGGKKPWRQKGTGHARQGST 78
Query: 176 RGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKF 235
R PQ+ G GPKPRS+ LNKKV+RL LK ALSA+ +G ++V + + KTK
Sbjct: 79 RAPQWTHGGVALGPKPRSYTYSLNKKVKRLALKSALSAKVQDGSMIVVDSITADEFKTKT 138
Query: 236 IVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRD 295
IVN + K +++ + + EK+ + N+ V + LNVY IL+++ ++ +D
Sbjct: 139 IVNMLKALSADKALIVLN--SVDEKVIKSAANIPGVKTTQANTLNVYDILKYNKFIVVKD 196
Query: 296 AVNKI 300
AV I
Sbjct: 197 AVATI 201
>gi|319938506|ref|ZP_08012900.1| 50S ribosomal protein L4 [Coprobacillus sp. 29_1]
gi|319806422|gb|EFW03089.1| 50S ribosomal protein L4 [Coprobacillus sp. 29_1]
Length = 207
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 74/181 (40%), Positives = 110/181 (60%), Gaps = 1/181 (0%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
VF + I +V Q A +QGTH K +EV G G+KPWRQKGTGRAR G++R PQ
Sbjct: 23 VFGIEPNNQAIFDMVLLQRASWRQGTHKVKNRTEVRGGGRKPWRQKGTGRARQGSIRAPQ 82
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
+RGG + GP PRS+ KLN+KVR+L LK ALS + + ++ V + + + + KTK ++
Sbjct: 83 WRGGGVVFGPTPRSYTFKLNRKVRQLALKSALSQKVIDNEMTVLDTITLNAPKTKDMIKV 142
Query: 240 YNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNK 299
+E +K L+ ++E + L+ +N+ V V+ S GLNVY IL LV++ A+
Sbjct: 143 LENLEANRKTLIV-MDEVNENVTLSARNIPGVKVIDSKGLNVYDILDCTKLVITEGAIKA 201
Query: 300 I 300
+
Sbjct: 202 V 202
>gi|90962405|ref|YP_536321.1| 50S ribosomal protein L4 [Lactobacillus salivarius UCC118]
gi|227891545|ref|ZP_04009350.1| 50S ribosomal protein L4 [Lactobacillus salivarius ATCC 11741]
gi|301300211|ref|ZP_07206423.1| 50S ribosomal protein L4 [Lactobacillus salivarius ACS-116-V-Col5a]
gi|385840909|ref|YP_005864233.1| 50S ribosomal protein L4 [Lactobacillus salivarius CECT 5713]
gi|417809710|ref|ZP_12456391.1| 50S ribosomal protein L4 [Lactobacillus salivarius GJ-24]
gi|418960953|ref|ZP_13512840.1| 50S ribosomal protein L4 [Lactobacillus salivarius SMXD51]
gi|122448605|sp|Q1WS91.1|RL4_LACS1 RecName: Full=50S ribosomal protein L4
gi|90821599|gb|ABE00238.1| LSU ribosomal protein L1E [Lactobacillus salivarius UCC118]
gi|227866692|gb|EEJ74113.1| 50S ribosomal protein L4 [Lactobacillus salivarius ATCC 11741]
gi|300215030|gb|ADJ79446.1| 50S ribosomal protein L4 [Lactobacillus salivarius CECT 5713]
gi|300852152|gb|EFK79824.1| 50S ribosomal protein L4 [Lactobacillus salivarius ACS-116-V-Col5a]
gi|335350634|gb|EGM52130.1| 50S ribosomal protein L4 [Lactobacillus salivarius GJ-24]
gi|380344620|gb|EIA32966.1| 50S ribosomal protein L4 [Lactobacillus salivarius SMXD51]
Length = 207
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 80/205 (39%), Positives = 118/205 (57%), Gaps = 8/205 (3%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P F +D G + L +F + +++ V Q A +QGTH+ K S V G
Sbjct: 1 MPTVALFKQDGNQNGEVQLNEAIFGIEPNNNVVFDAVIMQRASLRQGTHAVKNRSAVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
GKKPWRQKGTGRAR G++R PQ+ GG T+ GP PRS++ KL +KVRRL +K LS + A+
Sbjct: 61 GKKPWRQKGTGRARQGSIRSPQWVGGGTVFGPTPRSYSYKLPRKVRRLAIKSVLSQKVAD 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVL--LCDGGCIHEKLKLATQNLHYVNVLP 275
L+V + L + KTK + + KVL L D LA +NL V V+P
Sbjct: 121 ESLVVVDALNFDAPKTKAFAEVLSNLNVNSKVLVVLEDDNTTAA---LAARNLKNVTVIP 177
Query: 276 SVGLNVYSILQHDTLVMSRDAVNKI 300
+ GLNV ++ +D LV+++ A++++
Sbjct: 178 AKGLNVLDVINNDKLVITQGALSQV 202
>gi|342214833|ref|ZP_08707504.1| 50S ribosomal protein L4 [Veillonella sp. oral taxon 780 str.
F0422]
gi|341590364|gb|EGS33607.1| 50S ribosomal protein L4 [Veillonella sp. oral taxon 780 str.
F0422]
Length = 207
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 115/191 (60%), Gaps = 5/191 (2%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L VF V + ++H+ V QL+ + GTH+TKT EV G GKKPWRQKGTGRAR
Sbjct: 15 GEIQLNDAVFGVEVNAAVMHQAVVRQLSNERLGTHATKTRGEVRGGGKKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G+ R P + GG GP+PRS+ + +K RRL +K ALS + +L V ++L++ +
Sbjct: 75 AGSSRSPIWVGGGITFGPQPRSYYKAMPRKARRLAVKSALSDKVNNSELFVIDELKLAAP 134
Query: 232 KTKFIVNYYN--QMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDT 289
KTK ++N N Q+ + K + + DG ++L+ +N+ V LP +N++ +L HD
Sbjct: 135 KTKEVLNILNNFQVGDAKVLFITDGDV---NVELSARNIQGVKALPYTNINIFDLLHHDK 191
Query: 290 LVMSRDAVNKI 300
L ++ A+ KI
Sbjct: 192 LFIAEGAIAKI 202
>gi|429765123|ref|ZP_19297425.1| 50S ribosomal protein L4 [Clostridium celatum DSM 1785]
gi|429186866|gb|EKY27795.1| 50S ribosomal protein L4 [Clostridium celatum DSM 1785]
Length = 206
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 121/203 (59%), Gaps = 5/203 (2%)
Query: 101 IPVTNFFNEDKGFMV---LAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN++ + L VF V + D +H+VV LA ++QGT S KT +EV G
Sbjct: 1 MPTVGLFNKEGNKIEDIQLNDKVFAVEVNADAMHQVVVALLANKRQGTQSAKTRAEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G KPWRQKGTGRAR G++R PQ+ G + PKPR + + + K +RR+ + AL+++
Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIKGGVVFAPKPRDYRMSIPKSMRRVAMLSALTSKVQN 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+++V + L + + KTK +V N N KK L+ +E + + +N+ V VLP
Sbjct: 121 DEMIVLDSLTLEAPKTKEVVKMLNAF-NAKKTLIVTAES-NEVVYKSARNIEGVEVLPVN 178
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
+NVY +L++ ++M++DAV+KI
Sbjct: 179 NINVYDLLKYPKVIMTKDAVSKI 201
>gi|329889130|ref|ZP_08267473.1| 50S ribosomal protein L4 [Brevundimonas diminuta ATCC 11568]
gi|328844431|gb|EGF93995.1| 50S ribosomal protein L4 [Brevundimonas diminuta ATCC 11568]
Length = 212
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 86/207 (41%), Positives = 123/207 (59%), Gaps = 2/207 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+ + V + G + L+ VF + IR D++ R V WQLAKR+ GTH +T +E S T
Sbjct: 1 MKLSVIKLDGKAAGDVELSDAVFGISDIRGDLLARYVNWQLAKRRAGTHKVQTRNENSRT 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
GKK ++QKGTG ARHG+ R PQF GG+ GP R H L KKVR L L+ ALS++A
Sbjct: 61 GKKMYKQKGTGGARHGSRRAPQFVGGSRAFGPVVRDHGYSLPKKVRALALRHALSSKAKA 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
G L+V + + V KT + + ++ T K L+ G + LA +N+ +++VLP+
Sbjct: 121 GDLVVVDSVSVKEAKTASLRETFGKLGWT-KALIIAGPEVETNFGLAARNIPHIDVLPNA 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKIVDRM 304
GLNVY IL+ D LV+++ AV I R
Sbjct: 180 GLNVYDILRADKLVLTKAAVEAIEARF 206
>gi|392406846|ref|YP_006443454.1| 50S ribosomal protein L4 [Anaerobaculum mobile DSM 13181]
gi|390619982|gb|AFM21129.1| 50S ribosomal protein L4, bacterial/organelle [Anaerobaculum mobile
DSM 13181]
Length = 208
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 87/203 (42%), Positives = 124/203 (61%), Gaps = 7/203 (3%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + G + LA +VF I +H+VV LA ++QGTHSTKT EV G G+K
Sbjct: 4 VDVIGIDGQKVGEVALADEVFASRIHVPAMHQVVVAYLAAQRQGTHSTKTRGEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQK TGRAR G++R P + G HGPKPRS+ K+NKKVRRL ++ ALS + E KL
Sbjct: 64 PWRQKHTGRARQGSIRSPLWIKGGVAHGPKPRSYDQKVNKKVRRLAMRSALSLKLKENKL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLK---LATQNLHYVNVLPSV 277
L+ E +E S+KTK + + + K L+ IHE + +A+QN+ + VL
Sbjct: 124 LLVEGIESLSYKTKDMCAFLANVNAQDKPLM----VIHESMPSVYMASQNIPGMKVLHVD 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
G+NVY IL H+ L++++DA ++
Sbjct: 180 GINVYEILNHEHLILTKDAAQRL 202
>gi|317126862|ref|YP_004093144.1| 50S ribosomal protein L4/L1e [Bacillus cellulosilyticus DSM 2522]
gi|315471810|gb|ADU28413.1| ribosomal protein L4/L1e [Bacillus cellulosilyticus DSM 2522]
Length = 207
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 123/203 (60%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNE---DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N+ G + L+ +F + + ++ V Q A ++QGTH+TK S+V G
Sbjct: 1 MPKVTLYNQTGSQVGDIELSEAIFGIEPNESVLFDAVVMQQASQRQGTHATKGRSDVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+ GG + GP+PRS+A K+ KK RRL LK ALS++
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWVGGGVVFGPQPRSYAYKIPKKQRRLALKSALSSKVNA 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++LV E L S KTK + + + +K L+ ++ + L+ +N+ V + +
Sbjct: 121 DEILVLEGLNFDSPKTKEMKAVLSGLSVGRKALVVTADY-NDAVALSARNIPGVKFITAE 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
G+NV +L +D L++++DAV K+
Sbjct: 180 GVNVLDLLNYDQLIITQDAVKKV 202
>gi|301772042|ref|XP_002921423.1| PREDICTED: 39S ribosomal protein L4, mitochondrial-like [Ailuropoda
melanoleuca]
gi|281337408|gb|EFB12992.1| hypothetical protein PANDA_010325 [Ailuropoda melanoleuca]
Length = 294
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/232 (36%), Positives = 126/232 (54%), Gaps = 3/232 (1%)
Query: 69 PDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKD 128
P+S A P +L++ L Q V + + E G L +VF + R D
Sbjct: 35 PESVASAGPRAPVLRRCELPVPAPRRPVQAWVESLRGYEQERVGLAELHPEVFSIAPRLD 94
Query: 129 IIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHG 188
I+H+VV WQ ++ TKT +EV G G+KPW QKG+GR+RHG++R P +RGG HG
Sbjct: 95 ILHQVVTWQKNFKRISYAKTKTRAEVRGGGRKPWPQKGSGRSRHGSIRSPIWRGGGIAHG 154
Query: 189 PK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQMENTK 247
P+ P S+ L KVR GLK+AL+ + A+ L + + LE+P+ +++
Sbjct: 155 PRGPTSYYYMLPMKVRVQGLKVALTVKLAQDDLHIVDSLELPTSDPQYLTELARYRRWGD 214
Query: 248 KVLLCDGGC--IHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAV 297
VLL D + + + A L N++P+VGLNVYS+L+H TLV++ V
Sbjct: 215 SVLLVDLAHDDMPQNIVAAASGLKTFNLIPAVGLNVYSMLKHQTLVLTLQTV 266
>gi|256844430|ref|ZP_05549916.1| 50S ribosomal protein L4/L1 [Lactobacillus crispatus 125-2-CHN]
gi|256613508|gb|EEU18711.1| 50S ribosomal protein L4/L1 [Lactobacillus crispatus 125-2-CHN]
Length = 205
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 76/192 (39%), Positives = 113/192 (58%), Gaps = 3/192 (1%)
Query: 109 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTG 168
+D G + L VF + + ++ + Q A ++QGT K S V G GKKPWRQKGTG
Sbjct: 12 KDSGEVTLNDKVFGIEPNESVVFEAIIRQRAGKRQGTSKVKNRSAVRGGGKKPWRQKGTG 71
Query: 169 RARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEV 228
RAR G++R PQ+RGG T+ GP PRS+A + +K RRL +K LS + + L+V + L +
Sbjct: 72 RARQGSIRAPQWRGGGTVFGPTPRSYAYTMPRKQRRLAIKSVLSRKLIDNDLIVLDKLTM 131
Query: 229 PSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHD 288
+ KTK +V+ N + KVL+ ++L+ +NL V V+P GLNV + +
Sbjct: 132 SAPKTKELVSILNGLNADGKVLIV---SDDNNVQLSARNLTKVKVVPVNGLNVEDAVNYG 188
Query: 289 TLVMSRDAVNKI 300
L++ +DAV KI
Sbjct: 189 KLILDQDAVKKI 200
>gi|293402502|ref|ZP_06646637.1| ribosomal protein L4/L1 family protein [Erysipelotrichaceae
bacterium 5_2_54FAA]
gi|291304016|gb|EFE45270.1| ribosomal protein L4/L1 family protein [Erysipelotrichaceae
bacterium 5_2_54FAA]
Length = 209
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 111/192 (57%), Gaps = 1/192 (0%)
Query: 114 MVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHG 173
+ LA VF + + I + Q A +QGTH TK +EV G G+KPWRQKGTGRAR G
Sbjct: 17 ITLADTVFGIEPNQQCIFDAIVMQRASMRQGTHDTKNRTEVRGGGRKPWRQKGTGRARQG 76
Query: 174 TLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKT 233
++R Q+RGG T+ GP PRS+A KLNKKVRRL LK LS + AE + V + E+ + KT
Sbjct: 77 SIRATQWRGGGTVFGPTPRSYAYKLNKKVRRLALKSVLSEKVAENAMSVVDKFELEAPKT 136
Query: 234 KFIVNYYNQMENTKKVL-LCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVM 292
K + +K L + G E L+ +N+ + +L + GLNVY I+ + +V
Sbjct: 137 KAFNEIIANLNAPRKTLFVVSEGEDFENAFLSMRNIPSMMMLTADGLNVYDIVNANKIVF 196
Query: 293 SRDAVNKIVDRM 304
+ AV + + +
Sbjct: 197 TEAAVKDVEEAL 208
>gi|320335522|ref|YP_004172233.1| 50S ribosomal protein L4 [Deinococcus maricopensis DSM 21211]
gi|319756811|gb|ADV68568.1| ribosomal protein L4/L1e [Deinococcus maricopensis DSM 21211]
Length = 201
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 83/179 (46%), Positives = 112/179 (62%), Gaps = 9/179 (5%)
Query: 122 DVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQF 180
D+P + ++H VV WQLAKR+QG+ STKT ++VS GKK + QKGTG ARHG P F
Sbjct: 18 DLPEVNTHVLHEVVSWQLAKRRQGSASTKTRAQVSRGGKKMYSQKGTGNARHGDRSVPTF 77
Query: 181 RGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYY 240
GG GPKPRS+A L KKVR+LGL +AL+ R A+ KLL + + KTK V +
Sbjct: 78 VGGGVAFGPKPRSYAYTLPKKVRQLGLAMALADRQAQDKLLAVDGFGLDG-KTKSFVAWA 136
Query: 241 --NQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAV 297
N M+ +++V L E + A +NL +V LP GLNVY IL+H+ L++ DA+
Sbjct: 137 KENGMDGSERVFLV---TDDEATRRAARNLSWVTALPVAGLNVYDILRHERLII--DAI 190
>gi|366052601|ref|ZP_09450323.1| 50S ribosomal protein L4 [Lactobacillus suebicus KCTC 3549]
Length = 208
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 76/190 (40%), Positives = 117/190 (61%), Gaps = 3/190 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L DVF + ++ I+ V Q A +QGTH+ K S VSG GKKPWRQKGTGRAR
Sbjct: 16 GTVDLNADVFGIEPNQNAIYDAVLRQRASLRQGTHAVKNRSAVSGGGKKPWRQKGTGRAR 75
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+RGG + GP PRS++ KL +KVR+L +K ALS + A+ KL+V + +
Sbjct: 76 QGSIRSPQWRGGGIVFGPTPRSYSFKLPRKVRQLAIKSALSEKVADDKLVVVDSISFDKP 135
Query: 232 KTK-FIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTL 290
KTK F N K +L+ D +E + L+ +N+ V V + +N+ ++ +D L
Sbjct: 136 KTKEFTAVLANLKVAEKTLLVLDKD--NENVALSARNIANVTVTNAANVNILDVVNNDKL 193
Query: 291 VMSRDAVNKI 300
V+++ A++++
Sbjct: 194 VITQSALSQV 203
>gi|108797987|ref|YP_638184.1| 50S ribosomal protein L4 [Mycobacterium sp. MCS]
gi|119867083|ref|YP_937035.1| 50S ribosomal protein L4 [Mycobacterium sp. KMS]
gi|126433649|ref|YP_001069340.1| 50S ribosomal protein L4 [Mycobacterium sp. JLS]
gi|122977349|sp|Q1BDA6.1|RL4_MYCSS RecName: Full=50S ribosomal protein L4
gi|166234689|sp|A3PVC2.1|RL4_MYCSJ RecName: Full=50S ribosomal protein L4
gi|166234690|sp|A1UBN7.1|RL4_MYCSK RecName: Full=50S ribosomal protein L4
gi|108768406|gb|ABG07128.1| LSU ribosomal protein L4P [Mycobacterium sp. MCS]
gi|119693172|gb|ABL90245.1| LSU ribosomal protein L4P [Mycobacterium sp. KMS]
gi|126233449|gb|ABN96849.1| LSU ribosomal protein L4P [Mycobacterium sp. JLS]
Length = 219
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 119/192 (61%), Gaps = 2/192 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++FDV ++H+VV QLA ++QGTHSTKT EVSG GKKP+RQKGTGRAR
Sbjct: 16 GSVELPAELFDVEANIALMHQVVTAQLAAKRQGTHSTKTRGEVSGGGKKPYRQKGTGRAR 75
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL-LVFEDLEVPS 230
G+ R PQF GG T+HGP+PR ++ + KK+ L+ ALS RA G++ V E +E +
Sbjct: 76 QGSTRAPQFTGGGTVHGPQPRDYSQRTPKKMIAAALRGALSDRARNGRIHAVTELVEGQT 135
Query: 231 HKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTL 290
TK + + + K+VL+ G E + + +NL V+++ LN Y +L+ D +
Sbjct: 136 PSTKSAKAFLSTLTERKQVLVVIGRA-DETSERSVRNLPGVHIISPDQLNTYDVLKADDV 194
Query: 291 VMSRDAVNKIVD 302
V S +A+N ++
Sbjct: 195 VFSVEALNAYIN 206
>gi|17933744|ref|NP_524939.1| mitochondrial ribosomal protein L4 [Drosophila melanogaster]
gi|7298296|gb|AAF53526.1| mitochondrial ribosomal protein L4 [Drosophila melanogaster]
gi|16769472|gb|AAL28955.1| LD33485p [Drosophila melanogaster]
gi|220944276|gb|ACL84681.1| mRpL4-PA [synthetic construct]
gi|220954122|gb|ACL89604.1| mRpL4-PA [synthetic construct]
Length = 296
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 79/201 (39%), Positives = 115/201 (57%), Gaps = 2/201 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L DVF R DII V WQ R TKT +EV G G+KPW QKG GRAR
Sbjct: 81 GLIELHPDVFAAQPRVDIIQENVEWQSKYRYVSMAHTKTRAEVRGGGRKPWPQKGGGRAR 140
Query: 172 HGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPS 230
HG+LR P +GG +HGP+ P +H L R LGL LS + A+ L + +++++P+
Sbjct: 141 HGSLRSPMLKGGGVVHGPRSPTTHFYMLPFYKRVLGLTSTLSVKLAQDDLHIIDNVDIPT 200
Query: 231 HKTKFIVNYYNQMENTKKVLLCDGGCIH-EKLKLATQNLHYVNVLPSVGLNVYSILQHDT 289
+F+ + + VL+ D + + A+ +L YVN++P+ GLNVYS+L+HDT
Sbjct: 201 GDAEFLKDLIAERNWGPSVLIVDEDHMFPANICQASDDLGYVNLMPTFGLNVYSMLKHDT 260
Query: 290 LVMSRDAVNKIVDRMHTPINR 310
LV++ AV + R+ +NR
Sbjct: 261 LVLTVAAVKHLEQRLLYQLNR 281
>gi|403514314|ref|YP_006655134.1| 50S ribosomal protein L4 [Lactobacillus helveticus R0052]
gi|403079752|gb|AFR21330.1| 50S ribosomal protein L4 [Lactobacillus helveticus R0052]
Length = 205
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 116/200 (58%), Gaps = 3/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I V + +D G + L VF + + ++ + Q A ++QGT K S V G GKK
Sbjct: 4 IKVMDQNGKDSGEVTLNDKVFGIEPNESVVFETIIRQRAGKRQGTSKVKNRSAVRGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+RGG T+ GP PRS+A + +K RRL +K LS + + L
Sbjct: 64 PWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYTMPRKQRRLAIKSVLSQKMIDKDL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + L + + KTK +V+ N + KVL+ ++L+ +NL V +P GLN
Sbjct: 124 IVLDKLTMSAPKTKDLVSMLNSLNVDGKVLIV---SDDNNVQLSARNLAKVKAVPVNGLN 180
Query: 281 VYSILQHDTLVMSRDAVNKI 300
V + + L++++DAV KI
Sbjct: 181 VEDAVNYGKLILTQDAVKKI 200
>gi|291280147|ref|YP_003496982.1| 50S ribosomal protein L4 [Deferribacter desulfuricans SSM1]
gi|290754849|dbj|BAI81226.1| 50S ribosomal protein L4 [Deferribacter desulfuricans SSM1]
Length = 209
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 83/203 (40%), Positives = 118/203 (58%), Gaps = 1/203 (0%)
Query: 100 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
VI V N N+ + L + P++ ++H VV QLA R+ GTHSTKT EV G G+
Sbjct: 3 VIEVLNQENKKVKEVNLDDSIISYPVKPWLMHEVVVMQLACRRAGTHSTKTRGEVRGGGR 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
KPWRQKGTGRAR G++R P + GG T+ GPKPR ++ K+ KK + LK AL A+ +
Sbjct: 63 KPWRQKGTGRARAGSIRSPLWVGGGTIFGPKPRDYSYKMPKKKVKNALKSALRAKLEDNA 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGL 279
L + E L V + KTK V +KVL+ + EK+ A +N+ YV +L GL
Sbjct: 123 LKIIESLNVENGKTKEAVAILKNFGANRKVLVVYNE-LDEKVIRAFRNIPYVKLLNVKGL 181
Query: 280 NVYSILQHDTLVMSRDAVNKIVD 302
NVY ++ T++M D + +I +
Sbjct: 182 NVYDLINARTILMLEDCLPRITE 204
>gi|160932200|ref|ZP_02079591.1| hypothetical protein CLOLEP_01035 [Clostridium leptum DSM 753]
gi|156868802|gb|EDO62174.1| 50S ribosomal protein L4 [Clostridium leptum DSM 753]
Length = 207
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 116/200 (58%), Gaps = 1/200 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + ++ G + L+ VF + ++H VV LA ++QGT S T SEVSG GKK
Sbjct: 4 VAVFDVTGKEVGKIDLSDAVFGIEPNAVVMHEVVVNYLANQRQGTQSALTRSEVSGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ G + PKPRS+ +NKKVRRL LK ALS++ E L
Sbjct: 64 PWRQKGTGHARQGSTRAPQWTHGGIVFAPKPRSYRYTVNKKVRRLALKSALSSKVQEESL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + + + ++KTK + N + KK L+ + +KL + N+ V +N
Sbjct: 124 VVLDSMTMDAYKTKTVAAMLNALGAEKKALIVL-PSVDQKLIKSANNIPGVKTAQVNTIN 182
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY IL D L++ +DAV KI
Sbjct: 183 VYDILNADKLIVLKDAVAKI 202
>gi|402302062|ref|ZP_10821182.1| 50S ribosomal protein L4 [Selenomonas sp. FOBRC9]
gi|400381049|gb|EJP33853.1| 50S ribosomal protein L4 [Selenomonas sp. FOBRC9]
Length = 207
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 115/202 (56%), Gaps = 5/202 (2%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + ++ G + L+ D F+V + ++H+ V QLA ++ GTH+TKT V G GKK
Sbjct: 4 VAVYDMSHKQVGEIDLSDDFFNVEMNAGLLHQAVVLQLASQRLGTHATKTRGLVRGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G+ R P + GG T+ GP PR + + +K RRL LK ALS + G
Sbjct: 64 PWRQKGTGRARAGSTRSPLWVGGGTVFGPHPRKYGFTMPRKQRRLALKCALSDKVRTGDF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLA--TQNLHYVNVLPSVG 278
+V + L+ + KTK V N K L E + +A T N+ V + + G
Sbjct: 124 IVLDSLDFDAPKTKQAVKLLNDFGVDAKSLFI---TADEAVNVARSTSNIPGVKAVTAAG 180
Query: 279 LNVYSILQHDTLVMSRDAVNKI 300
+NV+ IL HD L +++DAV +I
Sbjct: 181 INVFDILHHDKLFITKDAVTRI 202
>gi|195475362|ref|XP_002089953.1| GE19365 [Drosophila yakuba]
gi|194176054|gb|EDW89665.1| GE19365 [Drosophila yakuba]
Length = 296
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 114/201 (56%), Gaps = 2/201 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L DVF R D+I V WQ R TK +EV G G+KPW QKG GRAR
Sbjct: 81 GLIELHPDVFAAQPRVDLIQENVEWQRKYRYVSMAHTKNRAEVRGGGRKPWPQKGGGRAR 140
Query: 172 HGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPS 230
HG+LR P +GG +HGP+ P +H L R LGL LS + A+ L + E++++P+
Sbjct: 141 HGSLRSPMLKGGGVVHGPRSPTTHFYMLPFYKRVLGLTSTLSVKLAQDDLHIIENVDIPT 200
Query: 231 HKTKFIVNYYNQMENTKKVLLCDGGCIH-EKLKLATQNLHYVNVLPSVGLNVYSILQHDT 289
+ F+ + + VL+ D + + A+ +L YVN++P+ GLNVYS+L+HDT
Sbjct: 201 RDSDFLKDLIAERNWGPSVLIVDDDHMFPANICQASDDLGYVNLMPTFGLNVYSMLKHDT 260
Query: 290 LVMSRDAVNKIVDRMHTPINR 310
LV++ AV + R+ +NR
Sbjct: 261 LVLTVAAVKHLEQRLLYQLNR 281
>gi|304391027|ref|ZP_07372979.1| ribosomal protein L4/L1 family protein [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|304325910|gb|EFL93156.1| ribosomal protein L4/L1 family protein [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
Length = 214
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 78/195 (40%), Positives = 115/195 (58%), Gaps = 5/195 (2%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L G+VFD+ ++H+VV QLA +QGTH+TKT +VSG GKKPWRQKGTGRAR
Sbjct: 18 GTVELPGEVFDLDFNNPLVHQVVNAQLAAARQGTHATKTRGDVSGGGKKPWRQKGTGRAR 77
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL---EV 228
G++R PQF GG T+HGP+PR ++ KK++ L+ ALS RA G++ V D E
Sbjct: 78 QGSIRAPQFAGGGTVHGPQPRDYSQNTPKKMKAAALRQALSDRARAGRIHVLSDFGVKET 137
Query: 229 PSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHD 288
PS TK + + ++ L+ + + + L+ NL + L LN Y +L +D
Sbjct: 138 PS--TKAAKAALQGVVDNRRALIVLTPEVDDVVALSVNNLSEHHALFVGELNTYDVLAND 195
Query: 289 TLVMSRDAVNKIVDR 303
+V S A++ + +
Sbjct: 196 DVVFSATALDSFLGK 210
>gi|295398289|ref|ZP_06808331.1| ribosomal protein L4/L1 family protein [Aerococcus viridans ATCC
11563]
gi|294973428|gb|EFG49213.1| ribosomal protein L4/L1 family protein [Aerococcus viridans ATCC
11563]
Length = 207
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 74/189 (39%), Positives = 115/189 (60%), Gaps = 1/189 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +VF + ++ I+ VV Q A +QGTH K SEVSG G+KPWRQKGTGRAR
Sbjct: 15 GEITLNDEVFAIEPNENAIYDVVIMQQASLRQGTHKVKGRSEVSGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+ GG GP PRS+A KL +KVRRL L+ ALS + AE +V ++L +
Sbjct: 75 QGSIRSPQWVGGGRAFGPTPRSYAYKLPRKVRRLALRSALSTKVAENNFIVVDELAFETP 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KTK N ++ KVL+ ++ +L+ +NL V V+ +NV+ ++ + ++
Sbjct: 135 KTKLFQEVLNNLQVENKVLVVINKD-NDNAQLSARNLPNVKVVDENNVNVFDLVNSEKVI 193
Query: 292 MSRDAVNKI 300
+++ A++ +
Sbjct: 194 ITKAALSNV 202
>gi|160941068|ref|ZP_02088406.1| hypothetical protein CLOBOL_05961 [Clostridium bolteae ATCC
BAA-613]
gi|158436017|gb|EDP13784.1| hypothetical protein CLOBOL_05961 [Clostridium bolteae ATCC
BAA-613]
Length = 206
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 119/201 (59%), Gaps = 4/201 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G + L VF V + + ++H V QLA ++QGT KT SEVSG G+K
Sbjct: 4 VSVYNMEGKEVGALELNDAVFGVEVNEHLVHLAVVAQLANKRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ++GG + P PR + I+LNKK +R L+ AL++R + K
Sbjct: 64 PWRQKGTGHARQGSTRSPQWKGGGVVFAPTPRDYTIRLNKKEKRAALRSALTSRVQDNKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKK-VLLCDGGCIHEKLKLATQNLHYVNVLPSVGL 279
+V ++L+ KTK N + ++ +K V+L D + L+ +N+ V +
Sbjct: 124 IVVDELKFDEIKTKKFQNVMDNLKVSKALVVLADN---DQNTVLSARNIAGVKTSQVGSI 180
Query: 280 NVYSILQHDTLVMSRDAVNKI 300
NVY IL+++T+V ++ AV I
Sbjct: 181 NVYDILKYNTVVATKAAVASI 201
>gi|408355487|ref|YP_006844018.1| 50S ribosomal protein L4 [Amphibacillus xylanus NBRC 15112]
gi|407726258|dbj|BAM46256.1| 50S ribosomal protein L4 [Amphibacillus xylanus NBRC 15112]
Length = 207
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 113/203 (55%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N+ G + L VF + ++H V Q A ++QGTH+ K S VSG
Sbjct: 1 MPKLALYNQSGSQVGDIELNDAVFGIEPNTHVLHDAVVMQQASKRQGTHAVKNRSAVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+ GG + GP PRS+A KL KKVRRL L+ ALS + E
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWVGGGVVFGPTPRSYAYKLPKKVRRLALRSALSTKVKE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
L V E L + KTK I+ + +K L+ E + + NL V VL +
Sbjct: 121 ESLTVLEGLTIEVPKTKEIIKLLAALNINEKALIVTNQK-DEVVAKSASNLQNVKVLHAS 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
+N IL +D +++++DA I
Sbjct: 180 QINTLDILAYDRMIITKDAAESI 202
>gi|363423639|ref|ZP_09311702.1| 50S ribosomal protein L4 [Rhodococcus pyridinivorans AK37]
gi|359731577|gb|EHK80619.1| 50S ribosomal protein L4 [Rhodococcus pyridinivorans AK37]
Length = 227
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 84/206 (40%), Positives = 119/206 (57%), Gaps = 6/206 (2%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
L + V + G + L ++FD P ++H+VV QLA +QGTH+TKT EV G G
Sbjct: 10 LTLDVKAPGGQTSGSVDLPAEIFDAPANIALLHQVVTAQLAAARQGTHATKTRGEVRGGG 69
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KKP+RQKGTGRAR G+ R PQF GG T+HGP+PR ++ + KK++ L+ ALS RA
Sbjct: 70 KKPYRQKGTGRARQGSTRAPQFAGGGTVHGPQPRDYSQRTPKKMKAAALRGALSDRARNE 129
Query: 219 KLLVFEDL---EVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++ V +L + PS TK + ++ + KKVLL G K + QNL V+ L
Sbjct: 130 RIHVITELVAGQTPS--TKSARTFLGEISDRKKVLLVVGREDVAAWK-SVQNLPNVHALA 186
Query: 276 SVGLNVYSILQHDTLVMSRDAVNKIV 301
LN Y +L D +V S +A+N +
Sbjct: 187 PDQLNTYDVLYSDDVVFSVEALNTFI 212
>gi|358051335|ref|ZP_09145545.1| 50S ribosomal protein L4 [Staphylococcus simiae CCM 7213]
gi|357259155|gb|EHJ09002.1| 50S ribosomal protein L4 [Staphylococcus simiae CCM 7213]
Length = 207
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 77/190 (40%), Positives = 111/190 (58%), Gaps = 3/190 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ VF + ++ + Q A +QGTH+ K S V G G+KPWRQKGTGRAR
Sbjct: 15 GSVELSDSVFAIEPNNSVLFEAITLQRASLRQGTHAVKNRSAVRGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
GT+R PQ+RGG + GP PRS+A K+ KK+RRL L+ ALS + E L + + +
Sbjct: 75 QGTIRAPQWRGGGIVFGPTPRSYAYKMPKKMRRLALRSALSFKVKENSLTIVDAFNFDAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLC-DGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTL 290
KTK N +E KKVL+ D ++ ++L+ +N+ V V + GLNV I D+L
Sbjct: 135 KTKEFKNVLTTLEQPKKVLVVTDNEDVN--VELSARNIPNVQVTTAQGLNVLDITNADSL 192
Query: 291 VMSRDAVNKI 300
V++ A K+
Sbjct: 193 VITEAAAKKV 202
>gi|282926795|ref|ZP_06334422.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A10102]
gi|282591246|gb|EFB96319.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A10102]
Length = 207
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 110/189 (58%), Gaps = 1/189 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ VF + ++ + Q A QGTH+ K S VSG G+KPW+QKGTGRAR
Sbjct: 15 GSIELSDAVFGIEPNNSVLFEAINLQRASLCQGTHAVKNRSAVSGGGRKPWKQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
GT+R PQ+RGG + GP PRS+A K+ KK+RRL L+ ALS +A E L V + +
Sbjct: 75 QGTIRAPQWRGGGIVFGPTPRSYAYKMPKKMRRLALRSALSFKAQENGLTVVDAFNFEAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KTK N + +E KKVL+ ++L+ +N+ V V + GLNV I D+LV
Sbjct: 135 KTKEFKNVLSTLEQPKKVLVVTENE-DVNVELSARNIPGVQVTTAQGLNVLDITNADSLV 193
Query: 292 MSRDAVNKI 300
++ A K+
Sbjct: 194 ITEAAAKKV 202
>gi|254973732|ref|ZP_05270204.1| 50S ribosomal protein L4 [Clostridium difficile QCD-66c26]
gi|255091121|ref|ZP_05320599.1| 50S ribosomal protein L4 [Clostridium difficile CIP 107932]
gi|255099233|ref|ZP_05328210.1| 50S ribosomal protein L4 [Clostridium difficile QCD-63q42]
gi|255305016|ref|ZP_05349188.1| 50S ribosomal protein L4 [Clostridium difficile ATCC 43255]
gi|255312776|ref|ZP_05354359.1| 50S ribosomal protein L4 [Clostridium difficile QCD-76w55]
gi|255515535|ref|ZP_05383211.1| 50S ribosomal protein L4 [Clostridium difficile QCD-97b34]
gi|255648630|ref|ZP_05395532.1| 50S ribosomal protein L4 [Clostridium difficile QCD-37x79]
gi|306518753|ref|ZP_07405100.1| 50S ribosomal protein L4 [Clostridium difficile QCD-32g58]
gi|384359400|ref|YP_006197252.1| 50S ribosomal protein L4 [Clostridium difficile BI1]
gi|400927241|ref|YP_001086538.2| 50S ribosomal protein L4 [Clostridium difficile 630]
gi|328887509|emb|CAJ66889.2| 50S ribosomal protein L4 [Clostridium difficile 630]
Length = 207
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 116/198 (58%), Gaps = 1/198 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V N ++ G + L+ +F V + +++ VV+ QLA ++QGT S KT +EV G G+KPW
Sbjct: 6 VLNVSGQNVGEIELSDSIFGVEVNGHVLYEVVKNQLANKRQGTQSAKTRAEVRGGGRKPW 65
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
+QKGTGRAR G+ R Q+ GG PKPRS+ L KKVRRL +K ALS++ +++V
Sbjct: 66 KQKGTGRARQGSTRSVQWVGGGVAFAPKPRSYKYTLPKKVRRLAMKSALSSKVQNSEVIV 125
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
+ L + + KTK N + KK L+ +K A +N+ V +NVY
Sbjct: 126 LDALNMDAPKTKEFAQILNNINAAKKALVVIADKNDNVIKSA-RNIEGVQTALVNTMNVY 184
Query: 283 SILQHDTLVMSRDAVNKI 300
IL++D+ +++ DAV K+
Sbjct: 185 DILKYDSFIITTDAVKKV 202
>gi|149922210|ref|ZP_01910648.1| 50S ribosomal protein L4 [Plesiocystis pacifica SIR-1]
gi|149816950|gb|EDM76435.1| 50S ribosomal protein L4 [Plesiocystis pacifica SIR-1]
Length = 218
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 117/202 (57%), Gaps = 2/202 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V + D + ++ +VF +++ ++ VVRWQ AK++ GT TK SEV GT K +
Sbjct: 6 VKDLEGNDVAEIEVSDEVFAAEVKEHLLWEVVRWQRAKKRAGTAKTKERSEVHGTRSKMY 65
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQKGTG ARHG+ R FRGG +HGP+PR + +NKK R L+ ALS RA+EG L+V
Sbjct: 66 RQKGTGNARHGSRRVNVFRGGGQVHGPRPRDYTFSVNKKARAGALRSALSLRASEGNLVV 125
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
D EVP KT+ + ++ N K LL DGG + L + +NL + G+NVY
Sbjct: 126 IRDFEVPDAKTRNLAAALGKL-NAPKSLLVDGGD-NMSLARSARNLPTAQHIVPEGVNVY 183
Query: 283 SILQHDTLVMSRDAVNKIVDRM 304
IL+ L++S ++ + R+
Sbjct: 184 DILRFPKLLISESSLRALEARL 205
>gi|302388713|ref|YP_003824534.1| 50S ribosomal protein L4P [Thermosediminibacter oceani DSM 16646]
gi|302199341|gb|ADL06911.1| LSU ribosomal protein L4P [Thermosediminibacter oceani DSM 16646]
Length = 208
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 128/201 (63%), Gaps = 3/201 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N + G + L+ VF V ++ +++H+VV LA ++ GT STKT +EV G G+K
Sbjct: 4 VALYNMQGQQVGEVELSDSVFGVEVKPEVMHQVVLNYLANQRVGTASTKTRAEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRARHG++R P +R G + GPKPRS+ L KK++RL LK ALSA+ + ++
Sbjct: 64 PWRQKGTGRARHGSIRSPLWRKGGIVFGPKPRSYKYTLPKKLKRLALKSALSAKVRDNEI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQME-NTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGL 279
+V + L + + KTK +V + ++ +TK +++ D ++ + + +N+ V L
Sbjct: 124 IVLDRLTMEAPKTKEMVKVLSNLKADTKSLIVLDASDVN--VVKSARNIPGVTTTTVNTL 181
Query: 280 NVYSILQHDTLVMSRDAVNKI 300
NVY IL HD L+M+ DAV ++
Sbjct: 182 NVYDILNHDKLIMTMDAVKRV 202
>gi|240145877|ref|ZP_04744478.1| ribosomal protein L4/L1 family protein [Roseburia intestinalis
L1-82]
gi|257202026|gb|EEV00311.1| ribosomal protein L4/L1 family protein [Roseburia intestinalis
L1-82]
gi|291535431|emb|CBL08543.1| LSU ribosomal protein L4P [Roseburia intestinalis M50/1]
Length = 206
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 118/200 (59%), Gaps = 2/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G + L VF V + + ++H V QLA +QGT KT SEV G G+K
Sbjct: 4 VAVYNMEGKEVGSLELNDAVFGVEVNEHLVHMAVLQQLANNRQGTQKAKTRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ G + P PR ++ KLNKK +R LK AL++R E K
Sbjct: 64 PWRQKGTGHARQGSTRAPQWTHGGVVFAPVPRDYSFKLNKKEKRAALKSALTSRVNESKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V ++L++ S KTK V N ++ K +++ + + + + N+ V + LN
Sbjct: 124 IVVDELKLDSIKTKNFVQVLNNLKVEKALVVLND--MDTNVIKSASNVPTVKTAQTNELN 181
Query: 281 VYSILQHDTLVMSRDAVNKI 300
V+ +L++DT+V+++DAV I
Sbjct: 182 VFDVLKYDTVVVTKDAVKTI 201
>gi|385813106|ref|YP_005849499.1| 50S ribosomal protein L4 [Lactobacillus helveticus H10]
gi|323465825|gb|ADX69512.1| 50S ribosomal protein L4 [Lactobacillus helveticus H10]
Length = 205
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 116/200 (58%), Gaps = 3/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + +D G + L VF + + ++ V Q A ++QGT K S V G GKK
Sbjct: 4 LKVMDQNGKDSGEVTLNDKVFGIEPNESVVFETVIRQRAGKRQGTSKVKNRSAVRGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+RGG T+ GP PRS+A + +K RRL +K LS + + L
Sbjct: 64 PWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYTMPRKQRRLAIKSVLSQKMIDKDL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + L + + KTK +V+ N + KVL+ ++L+ +NL V +P GLN
Sbjct: 124 IVLDKLAMSAPKTKDLVSMLNSLNVDGKVLIV---SDDNNVQLSARNLAKVKAVPVNGLN 180
Query: 281 VYSILQHDTLVMSRDAVNKI 300
V + + L++++DAV KI
Sbjct: 181 VEDAVNYGKLILTQDAVKKI 200
>gi|49484465|ref|YP_041689.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257423734|ref|ZP_05600163.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
55/2053]
gi|257426412|ref|ZP_05602814.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
65-1322]
gi|257429051|ref|ZP_05605438.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
68-397]
gi|257434658|ref|ZP_05610709.1| LSU ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
M876]
gi|282902152|ref|ZP_06310045.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus
subsp. aureus C160]
gi|282906592|ref|ZP_06314440.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282909562|ref|ZP_06317373.1| ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282911809|ref|ZP_06319605.1| ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282915098|ref|ZP_06322875.1| ribosomal protein L4 [Staphylococcus aureus subsp. aureus M899]
gi|282920824|ref|ZP_06328542.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
C427]
gi|282925729|ref|ZP_06333377.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
C101]
gi|283959027|ref|ZP_06376468.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus
subsp. aureus A017934/97]
gi|293497502|ref|ZP_06665356.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
58-424]
gi|293511077|ref|ZP_06669774.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
M809]
gi|293549683|ref|ZP_06672355.1| ribosomal protein L4 [Staphylococcus aureus subsp. aureus M1015]
gi|295428832|ref|ZP_06821456.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
EMRSA16]
gi|297589682|ref|ZP_06948323.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus
subsp. aureus MN8]
gi|384866835|ref|YP_005747031.1| 50S ribosomal protein L4/L1 family protein [Staphylococcus aureus
subsp. aureus TCH60]
gi|415684499|ref|ZP_11449608.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CGS00]
gi|417888305|ref|ZP_12532419.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21195]
gi|418564038|ref|ZP_13128463.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21264]
gi|418580210|ref|ZP_13144296.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1605]
gi|418595662|ref|ZP_13159260.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21342]
gi|418601385|ref|ZP_13164821.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21345]
gi|418890049|ref|ZP_13444175.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1176]
gi|418895900|ref|ZP_13449978.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIGC341D]
gi|418898837|ref|ZP_13452901.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1214]
gi|418907220|ref|ZP_13461238.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG149]
gi|418915376|ref|ZP_13469341.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1267]
gi|418921117|ref|ZP_13475041.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1233]
gi|418983198|ref|ZP_13530900.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1242]
gi|418984026|ref|ZP_13531721.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1500]
gi|56749402|sp|Q6GEI4.1|RL4_STAAR RecName: Full=50S ribosomal protein L4
gi|49242594|emb|CAG41315.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257272752|gb|EEV04854.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
55/2053]
gi|257276043|gb|EEV07494.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
65-1322]
gi|257279532|gb|EEV10119.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
68-397]
gi|257285254|gb|EEV15370.1| LSU ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
M876]
gi|282312558|gb|EFB42962.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
C101]
gi|282315239|gb|EFB45623.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
C427]
gi|282320819|gb|EFB51153.1| ribosomal protein L4 [Staphylococcus aureus subsp. aureus M899]
gi|282323505|gb|EFB53821.1| ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282326541|gb|EFB56843.1| ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282329491|gb|EFB59012.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282596611|gb|EFC01570.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus
subsp. aureus C160]
gi|283788619|gb|EFC27446.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus
subsp. aureus A017934/97]
gi|290918730|gb|EFD95806.1| ribosomal protein L4 [Staphylococcus aureus subsp. aureus M1015]
gi|291096433|gb|EFE26691.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
58-424]
gi|291466064|gb|EFF08593.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
M809]
gi|295127181|gb|EFG56823.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
EMRSA16]
gi|297578193|gb|EFH96906.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus
subsp. aureus MN8]
gi|312437340|gb|ADQ76411.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus
subsp. aureus TCH60]
gi|315193501|gb|EFU23897.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CGS00]
gi|341856138|gb|EGS96981.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21195]
gi|371977138|gb|EHO94416.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21264]
gi|374398851|gb|EHQ70005.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21345]
gi|374400763|gb|EHQ71869.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21342]
gi|377702076|gb|EHT26401.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1242]
gi|377707622|gb|EHT31914.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1214]
gi|377709625|gb|EHT33877.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1500]
gi|377713402|gb|EHT37610.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1605]
gi|377737220|gb|EHT61230.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1233]
gi|377739240|gb|EHT63246.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1176]
gi|377753203|gb|EHT77120.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1267]
gi|377760050|gb|EHT83929.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG149]
gi|377763769|gb|EHT87623.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIGC341D]
Length = 207
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 110/189 (58%), Gaps = 1/189 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ VF + ++ + Q A +QGTH+ K S VSG G+KPW+QKGTGRAR
Sbjct: 15 GSIELSDAVFGIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVSGGGRKPWKQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
GT+R PQ+RGG + GP PRS+A K+ KK+RRL L+ ALS + E L V + +
Sbjct: 75 QGTIRAPQWRGGGIVFGPTPRSYAYKMPKKMRRLALRSALSFKVQENGLTVVDAFNFEAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KTK N + +E KKVL+ ++L+ +N+ V V + GLNV I D+LV
Sbjct: 135 KTKEFKNVLSTLEQPKKVLVVTENE-DVNVELSARNIPGVQVTTAQGLNVLDITNADSLV 193
Query: 292 MSRDAVNKI 300
++ A K+
Sbjct: 194 ITEAAAKKV 202
>gi|395851077|ref|XP_003798093.1| PREDICTED: 39S ribosomal protein L4, mitochondrial [Otolemur
garnettii]
Length = 295
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 81/211 (38%), Positives = 119/211 (56%), Gaps = 3/211 (1%)
Query: 97 QDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSG 156
Q V + + E G L DVF R DI+H+V WQ ++ TKT +EV G
Sbjct: 64 QAWVESLKGYEQERVGLAELHPDVFATAPRLDILHQVAIWQKNFKRISYAKTKTRAEVRG 123
Query: 157 TGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARA 215
G+KPW QKGTGRARHG++R P +RGG HGP+ P S+ L KVR GLKIAL+ +
Sbjct: 124 GGRKPWPQKGTGRARHGSIRSPIWRGGGVAHGPRGPTSYYYMLPMKVRARGLKIALTVKL 183
Query: 216 AEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGC--IHEKLKLATQNLHYVNV 273
A+ L + + LE+P+ +++ VLL D + + + AT L N+
Sbjct: 184 AQDDLHIVDSLELPTADPQYLTELARYRCWGDSVLLVDLAYEEMPQNIVEATSRLKTFNL 243
Query: 274 LPSVGLNVYSILQHDTLVMSRDAVNKIVDRM 304
+P+VGLNV+S+L+H TLV++ + + D++
Sbjct: 244 IPAVGLNVHSMLKHQTLVLTLPTIAFLEDKL 274
>gi|260681847|ref|YP_003213132.1| 50S ribosomal protein L4 [Clostridium difficile CD196]
gi|260685445|ref|YP_003216578.1| 50S ribosomal protein L4 [Clostridium difficile R20291]
gi|423081657|ref|ZP_17070259.1| 50S ribosomal protein L4 [Clostridium difficile 002-P50-2011]
gi|423085189|ref|ZP_17073644.1| 50S ribosomal protein L4 [Clostridium difficile 050-P50-2011]
gi|423089504|ref|ZP_17077862.1| 50S ribosomal protein L4 [Clostridium difficile 70-100-2010]
gi|260208010|emb|CBA60188.1| 50S ribosomal protein L4 [Clostridium difficile CD196]
gi|260211461|emb|CBE01581.1| 50S ribosomal protein L4 [Clostridium difficile R20291]
gi|357550235|gb|EHJ32060.1| 50S ribosomal protein L4 [Clostridium difficile 002-P50-2011]
gi|357550521|gb|EHJ32335.1| 50S ribosomal protein L4 [Clostridium difficile 050-P50-2011]
gi|357558114|gb|EHJ39621.1| 50S ribosomal protein L4 [Clostridium difficile 70-100-2010]
Length = 217
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 117/200 (58%), Gaps = 1/200 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G + L+ +F V + +++ VV+ QLA ++QGT S KT +EV G G+K
Sbjct: 14 LNVLNVSGQNVGEIELSDSIFGVEVNGHVLYEVVKNQLANKRQGTQSAKTRAEVRGGGRK 73
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G+ R Q+ GG PKPRS+ L KKVRRL +K ALS++ ++
Sbjct: 74 PWKQKGTGRARQGSTRSVQWVGGGVAFAPKPRSYKYTLPKKVRRLAMKSALSSKVQNSEV 133
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + L + + KTK N + KK L+ +K A +N+ V +N
Sbjct: 134 IVLDALNMDAPKTKEFAQILNNINAAKKALVVIADKNDNVIKSA-RNIEGVQTALVNTMN 192
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY IL++D+ +++ DAV K+
Sbjct: 193 VYDILKYDSFIITTDAVKKV 212
>gi|302388087|ref|YP_003823909.1| 50S ribosomal protein L4 [Clostridium saccharolyticum WM1]
gi|302198715|gb|ADL06286.1| ribosomal protein L4/L1e [Clostridium saccharolyticum WM1]
Length = 206
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 117/200 (58%), Gaps = 2/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G + L VF V + + ++H V QLA ++QGT KT +EVSG G+K
Sbjct: 4 VSVYNMEGKEVGTLELNDAVFGVDVNEHLVHMAVVSQLANKRQGTQKAKTRAEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTG AR G+ R PQ+ GG + P PR + I+LNKK RRL LK AL++R E K
Sbjct: 64 PWKQKGTGHARQGSTRSPQWTGGGVVFAPTPRDYTIRLNKKERRLALKSALTSRVNENKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V ++L+ KTK N ++ +K +++ G ++ +N+ V + +N
Sbjct: 124 IVVDELKFDEIKTKKFQTVLNNLKVSKALVVM--GEDSTNAVMSARNIAAVKTAFANTIN 181
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY IL++ T+V ++ AV I
Sbjct: 182 VYDILKYSTVVATKTAVAAI 201
>gi|255654163|ref|ZP_05399572.1| 50S ribosomal protein L4 [Clostridium difficile QCD-23m63]
Length = 207
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 116/198 (58%), Gaps = 1/198 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V N ++ G + L+ +F V + +++ VV+ QLA ++QGT S KT +EV G G+KPW
Sbjct: 6 VLNVSGQNVGEIELSDSIFGVEVNGHVLYEVVKNQLANKRQGTQSAKTRAEVRGGGRKPW 65
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
+QKGTGRAR G+ R Q+ GG PKPRS+ L KKVRRL +K ALS++ +++V
Sbjct: 66 KQKGTGRARQGSTRSVQWVGGGVAFAPKPRSYKYTLPKKVRRLAMKSALSSKVQNSEVIV 125
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
+ L + + KTK N + KK L+ +K A +N+ V +NVY
Sbjct: 126 LDALNMDAPKTKEFAQILNNINAAKKALVVIADKNDNIIKSA-RNIEGVQTALVNTMNVY 184
Query: 283 SILQHDTLVMSRDAVNKI 300
IL++D+ +++ DAV K+
Sbjct: 185 DILKYDSFIITTDAVKKV 202
>gi|111220547|ref|YP_711341.1| 50S ribosomal protein L4 [Frankia alni ACN14a]
gi|111148079|emb|CAJ59747.1| 50S ribosomal protein L4 [Frankia alni ACN14a]
Length = 236
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 84/203 (41%), Positives = 117/203 (57%), Gaps = 6/203 (2%)
Query: 110 DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGR 169
D G L G VFDVP+ +IH+VV QLA +QGTH+TKT EV G G+KP+RQKGTGR
Sbjct: 27 DGGSAELPGGVFDVPLNVPLIHQVVVAQLAAARQGTHATKTRGEVRGGGRKPYRQKGTGR 86
Query: 170 ARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL--- 226
AR G+LR PQF GG +HGP PRS+ + KK++ L+ ALS RA ++ V L
Sbjct: 87 ARQGSLRAPQFTGGGVVHGPTPRSYDQRTPKKMKAAALRGALSDRARNNRVHVVSSLVSG 146
Query: 227 EVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQ 286
E PS TK V + +T++VL+ E + +N+ V++L LN Y +L
Sbjct: 147 EAPS--TKAAVTALRTVADTRRVLVV-ASRTDELTWKSLRNVAAVHLLDPGQLNTYDVLV 203
Query: 287 HDTLVMSRDAVNKIVDRMHTPIN 309
D +V + +A+ + R P +
Sbjct: 204 SDDVVFTEEALAAFLARDSRPAS 226
>gi|366087937|ref|ZP_09454422.1| 50S ribosomal protein L4 [Lactobacillus zeae KCTC 3804]
Length = 207
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 78/193 (40%), Positives = 117/193 (60%), Gaps = 5/193 (2%)
Query: 110 DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGR 169
+ G + L ++ V ++++ V Q A +QGTH+ K S VSG G+KPWRQKGTGR
Sbjct: 13 ENGTVELNDAIWAVEPNENVVFDAVVMQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTGR 72
Query: 170 ARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVP 229
AR G++R PQ+RGG + GP PRS+A KL KKVRRL +K LS + + L+V + L
Sbjct: 73 ARQGSIRSPQWRGGGIVFGPTPRSYAYKLPKKVRRLAIKSVLSQKVLDSDLVVVDGLNFD 132
Query: 230 SHKTKFIVNYYNQMENTKK--VLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQH 287
+ KTK N + ++ +K V+L DG + K A +NL V V+P+ G+NV + +
Sbjct: 133 TPKTKAFQNVLDGLKVNEKALVVLEDGNEVAAK---AARNLPNVKVVPAEGINVLDAVDY 189
Query: 288 DTLVMSRDAVNKI 300
L++++ A+ KI
Sbjct: 190 KKLILTQSALQKI 202
>gi|354585426|ref|ZP_09004313.1| ribosomal protein L4/L1e [Paenibacillus lactis 154]
gi|353188695|gb|EHB54215.1| ribosomal protein L4/L1e [Paenibacillus lactis 154]
Length = 207
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 119/200 (59%), Gaps = 1/200 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N G + L VF + ++H V Q A ++GTH K SEV G G+K
Sbjct: 4 VALYNVSGSQVGEVELNEAVFGIEPNVHVMHSAVLLQRASLRRGTHKVKGRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G++R PQ++GG T+ GP PRS+ KL KKVRRL +K ALS++ + +
Sbjct: 64 PWKQKGTGRARQGSIRAPQWKGGGTVFGPTPRSYTFKLPKKVRRLAIKSALSSKVNDNAI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + L + + KTK N + ++ +K L+ + + L+ +N+ V + + G+N
Sbjct: 124 IVLDQLTLNAPKTKEFANILSNLKVGRKALIV-APSYDDNVALSARNIPGVKFVAADGIN 182
Query: 281 VYSILQHDTLVMSRDAVNKI 300
V +L +D L+++++AV K+
Sbjct: 183 VLDVLSYDQLIITKEAVQKV 202
>gi|226365596|ref|YP_002783379.1| 50S ribosomal protein L4 [Rhodococcus opacus B4]
gi|226244086|dbj|BAH54434.1| 50S ribosomal protein L4 [Rhodococcus opacus B4]
Length = 229
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 115/193 (59%), Gaps = 6/193 (3%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++FD P ++H+VV QLA +QGTH+TKT EV G GKKP+RQKGTGRAR
Sbjct: 24 GTVELPAEIFDAPANIALLHQVVVAQLAAARQGTHATKTRGEVRGGGKKPYRQKGTGRAR 83
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL---EV 228
G+ R PQF GG T+HGP+PR ++ + KK++ L+ ALS RA ++ V +L +
Sbjct: 84 QGSTRAPQFAGGGTVHGPQPRDYSQRTPKKMKAAALRGALSDRARNERIHVITELVAGQT 143
Query: 229 PSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHD 288
PS TK + ++ + KKVLL G K + QNL V+ + LN Y +L D
Sbjct: 144 PS--TKSARTFLGEISDRKKVLLVVGRADIAAWK-SVQNLEGVHPIAPDQLNTYDVLNSD 200
Query: 289 TLVMSRDAVNKIV 301
+V S +A+N +
Sbjct: 201 DVVFSVEALNAFI 213
>gi|427407000|ref|ZP_18897205.1| 50S ribosomal protein L4 [Selenomonas sp. F0473]
gi|425707475|gb|EKU70519.1| 50S ribosomal protein L4 [Selenomonas sp. F0473]
Length = 207
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 114/202 (56%), Gaps = 5/202 (2%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + ++ G + L + F+V + ++H+ V QLA ++ GTH+TKT V G GKK
Sbjct: 4 VAVYDMSHKQVGEINLNDEFFNVEMNAGLLHQAVVLQLASQRLGTHATKTRGLVRGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G+ R P + GG T+ GP PR + + +K RRL LK ALS + G
Sbjct: 64 PWRQKGTGRARAGSTRSPLWVGGGTVFGPHPRKYGFTMPRKQRRLALKCALSDKVRSGDF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLA--TQNLHYVNVLPSVG 278
+V E L+ + KTK V N K L E + +A T N+ V + + G
Sbjct: 124 IVLESLDFDAPKTKAAVKLLNDFGVDAKSLFV---TADEAVNVARSTSNIPGVKAITAAG 180
Query: 279 LNVYSILQHDTLVMSRDAVNKI 300
+NV+ IL HD L +++DAV +I
Sbjct: 181 INVFDILHHDKLFITKDAVTRI 202
>gi|320529797|ref|ZP_08030874.1| ribosomal protein L4/L1 family protein [Selenomonas artemidis
F0399]
gi|320137815|gb|EFW29720.1| ribosomal protein L4/L1 family protein [Selenomonas artemidis
F0399]
Length = 207
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 113/202 (55%), Gaps = 5/202 (2%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + + G + L D F+V + ++H+ V QLA ++ GTH+TKT V G GKK
Sbjct: 4 VAVYDMSHNKVGEIDLNDDFFNVEMNAGLLHQAVVLQLASQRLGTHATKTRGLVRGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G+ R P + GG T+ GP PR + + +K RRL LK ALS + G
Sbjct: 64 PWRQKGTGRARAGSTRSPLWVGGGTVFGPHPRKYGFTMPRKQRRLALKCALSDKVRTGDF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLA--TQNLHYVNVLPSVG 278
+V E L+ + KTK V N K L E + +A T N+ V + + G
Sbjct: 124 IVLESLDFDAPKTKQAVKLLNDFGVDAKSLFI---TADEAVNVARSTSNIPGVKAVTAAG 180
Query: 279 LNVYSILQHDTLVMSRDAVNKI 300
+NV+ IL HD L +++DAV +I
Sbjct: 181 INVFDILHHDKLFITKDAVTRI 202
>gi|224542239|ref|ZP_03682778.1| hypothetical protein CATMIT_01414 [Catenibacterium mitsuokai DSM
15897]
gi|224524781|gb|EEF93886.1| 50S ribosomal protein L4 [Catenibacterium mitsuokai DSM 15897]
Length = 215
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 109/185 (58%), Gaps = 1/185 (0%)
Query: 116 LAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTL 175
L +VF + I VV Q A +QGTH K EVSG GKKPWRQKGTGRAR G++
Sbjct: 27 LNENVFGIEPNNQAIFDVVLLQRASLRQGTHKVKNRHEVSGGGKKPWRQKGTGRARQGSI 86
Query: 176 RGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKF 235
R PQ+RGG + GP PRS+ K+NKKV+ L L+ LS + + +L+ + + + KTK
Sbjct: 87 RAPQWRGGGIVFGPTPRSYDFKINKKVKNLALRSVLSQKVIDQELVALDAIAFETIKTKN 146
Query: 236 IVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRD 295
+VN+ EN +K L+ + E L L+ +N+ V V+ + +NVY ++ L+M+
Sbjct: 147 VVNFLGNFENPRKTLIVVDK-LEENLVLSARNVPGVKVIEASNVNVYDVMDCTKLMMTEK 205
Query: 296 AVNKI 300
A+ +
Sbjct: 206 AIKAV 210
>gi|87248365|gb|ABD36235.1| ribosomal protein L4 [Bombyx mori]
Length = 284
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 77/195 (39%), Positives = 111/195 (56%), Gaps = 2/195 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L V+ P D+IH V WQ TKT +EV G GKKPW QKG GRA
Sbjct: 70 GLIELHPMVYAAPPSIDMIHSNVMWQSKYSWVSWAHTKTSAEVRGGGKKPWPQKGLGRAS 129
Query: 172 HGTLRGPQFRGGTTMHGPKP-RSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPS 230
HG++ P FRGG HGP+ +SH L + GL LSA+ A+ L + +DLE+P+
Sbjct: 130 HGSMSSPLFRGGGVAHGPRSGKSHFFMLPFHLSLHGLTTTLSAKLAQDDLHIVKDLELPT 189
Query: 231 HKTKFIVNYYNQMENTKKVLLCDG-GCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDT 289
+++++V+ VL+ D + AT NL +VN++P GLNVYS+L+HDT
Sbjct: 190 DESQYLVDLIENSNWGPSVLIIDDTDYAPSNITAATDNLLHVNIMPVYGLNVYSMLKHDT 249
Query: 290 LVMSRDAVNKIVDRM 304
LV+++ A KI +++
Sbjct: 250 LVLTQAAAEKIEEKL 264
>gi|333396606|ref|ZP_08478423.1| 50S ribosomal protein L4 [Lactobacillus coryniformis subsp.
coryniformis KCTC 3167]
gi|336392484|ref|ZP_08573883.1| 50S ribosomal protein L4 [Lactobacillus coryniformis subsp.
torquens KCTC 3535]
gi|420146293|ref|ZP_14653721.1| 50S ribosomal protein L4 [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
gi|398402024|gb|EJN55423.1| 50S ribosomal protein L4 [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
Length = 207
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 122/204 (59%), Gaps = 6/204 (2%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + +D G + L D+F + +++ + Q A +QGTH+ K S V G
Sbjct: 1 MPNVALYKQDGSQNGDVQLNDDIFGIAPNDNVVFDAIIMQRASLRQGTHAVKNRSAVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ KL KKVRRL +K LS + +
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAIKSVLSQKVID 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQME-NTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
G ++V + KTK ++ TK +++ + G +++ LA +NL V+V+ +
Sbjct: 121 GNIIVVDAFSFEQPKTKLFAESLKSLDVQTKALVVLEDG--NDQAALAARNLPNVSVVSA 178
Query: 277 VGLNVYSILQHDTLVMSRDAVNKI 300
G+NV ++ +D L++++ A++++
Sbjct: 179 DGINVLDVVANDKLILTQAALSQV 202
>gi|296449798|ref|ZP_06891567.1| ribosomal protein L4/L1 family protein [Clostridium difficile
NAP08]
gi|296877862|ref|ZP_06901884.1| ribosomal protein L4/L1 family protein [Clostridium difficile
NAP07]
gi|296261396|gb|EFH08222.1| ribosomal protein L4/L1 family protein [Clostridium difficile
NAP08]
gi|296431162|gb|EFH16987.1| ribosomal protein L4/L1 family protein [Clostridium difficile
NAP07]
Length = 217
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 117/200 (58%), Gaps = 1/200 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G + L+ +F V + +++ VV+ QLA ++QGT S KT +EV G G+K
Sbjct: 14 LNVLNVSGQNVGEIELSDSIFGVEVNGHVLYEVVKNQLANKRQGTQSAKTRAEVRGGGRK 73
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G+ R Q+ GG PKPRS+ L KKVRRL +K ALS++ ++
Sbjct: 74 PWKQKGTGRARQGSTRSVQWVGGGVAFAPKPRSYKYTLPKKVRRLAMKSALSSKVQNSEV 133
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + L + + KTK N + KK L+ +K A +N+ V +N
Sbjct: 134 IVLDALNMDAPKTKEFAQILNNINAAKKALVVIADKNDNIIKSA-RNIEGVQTALVNTMN 192
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY IL++D+ +++ DAV K+
Sbjct: 193 VYDILKYDSFIITTDAVKKV 212
>gi|88704377|ref|ZP_01102091.1| 50S ribosomal protein L4 [Congregibacter litoralis KT71]
gi|88701428|gb|EAQ98533.1| 50S ribosomal protein L4 [Congregibacter litoralis KT71]
Length = 205
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 118/193 (61%), Gaps = 2/193 (1%)
Query: 108 NEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGT 167
NE G + ++ F +D++H+VV LA +QGT + KT S+VSG GKKPWRQKGT
Sbjct: 10 NESAGTLSVSDANFAREYNEDLVHQVVTSFLAGARQGTRAQKTRSDVSGGGKKPWRQKGT 69
Query: 168 GRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLE 227
GRAR GT+R P +R G +P+ H++K+N+K+ R LK +S + +L+V E L+
Sbjct: 70 GRARAGTIRSPIWRSGGVTFAARPQDHSVKVNRKMYRAALKTIMSELTRQDRLVVVETLD 129
Query: 228 VPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQH 287
+ + KTK +VN + +L+ D ++E L LA++NL V+V ++ S+L H
Sbjct: 130 LDAPKTKLLVNQLDGYGVNSALLIAD--QVNENLYLASRNLQKVDVRDVQAIDPVSLLAH 187
Query: 288 DTLVMSRDAVNKI 300
D ++++ DA+ KI
Sbjct: 188 DKVMVTVDAIKKI 200
>gi|169823853|ref|YP_001691464.1| 50S ribosomal protein L4 [Finegoldia magna ATCC 29328]
gi|302379795|ref|ZP_07268279.1| 50S ribosomal protein L4 [Finegoldia magna ACS-171-V-Col3]
gi|303234753|ref|ZP_07321379.1| 50S ribosomal protein L4 [Finegoldia magna BVS033A4]
gi|417925299|ref|ZP_12568725.1| 50S ribosomal protein L4 [Finegoldia magna SY403409CC001050417]
gi|226730666|sp|B0RZU1.1|RL4_FINM2 RecName: Full=50S ribosomal protein L4
gi|167830658|dbj|BAG07574.1| 50S ribosomal protein L4 [Finegoldia magna ATCC 29328]
gi|302312383|gb|EFK94380.1| 50S ribosomal protein L4 [Finegoldia magna ACS-171-V-Col3]
gi|302494094|gb|EFL53874.1| 50S ribosomal protein L4 [Finegoldia magna BVS033A4]
gi|341592019|gb|EGS34915.1| 50S ribosomal protein L4 [Finegoldia magna SY403409CC001050417]
Length = 207
Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 120/197 (60%), Gaps = 1/197 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N E+ G + L +F V + + +++ VV+ QLA ++QGT S KT SEV G G+K
Sbjct: 4 VQILNQQGENVGELELNEAIFGVDVNEHVVYEVVKNQLANKRQGTQSAKTRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+RGG + PKPR ++ + KKVRRL +K L+ + + ++
Sbjct: 64 PWRQKGTGRARQGSIRSPQWRGGGVVFAPKPRDYSYAVPKKVRRLAIKSVLTEKVNDNEM 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + L + + TK V ++ KK L+ + L + +N+ V + + +N
Sbjct: 124 IVLDKLNLDAISTKKAVEVLKNIKADKKALVVIDKN-DDTLYRSFRNIENVAICEAKLIN 182
Query: 281 VYSILQHDTLVMSRDAV 297
VY L++++LV++ DAV
Sbjct: 183 VYDCLKYNSLVITTDAV 199
>gi|160902255|ref|YP_001567836.1| 50S ribosomal protein L4 [Petrotoga mobilis SJ95]
gi|189029512|sp|A9BHA4.1|RL4_PETMO RecName: Full=50S ribosomal protein L4
gi|160359899|gb|ABX31513.1| ribosomal protein L4/L1e [Petrotoga mobilis SJ95]
Length = 221
Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 83/213 (38%), Positives = 125/213 (58%), Gaps = 13/213 (6%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I + N NE G + + ++F++ D+++R V QL ++ GT STKT SEVSG G+K
Sbjct: 4 IDIYNIQNEKVGTLDIKDEIFNIDPNMDVLYRYVDMQLTNKRAGTASTKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW QK TGRAR G++R P FR G GPKPR LNKK++RL LK ALS R E L
Sbjct: 64 PWPQKHTGRARAGSIRSPLFRHGGVTFGPKPREFHKDLNKKMKRLALKSALSVRYRENNL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQ--MENTKKVLLCD-GGCIHEKLKLATQNLHYVNVLPS- 276
+V ++++ +TK + N ++ ME+TK + L +E KL+ +NL V V+ +
Sbjct: 124 IVLDEVKFEKPRTKDVKNILSKFGMEDTKVLFLFPYHQEQYENFKLSARNLPKVKVIIAD 183
Query: 277 ---------VGLNVYSILQHDTLVMSRDAVNKI 300
GLNV+ ++ + +V++++ VNKI
Sbjct: 184 NPGQNKKNVDGLNVFDLINSEKIVLTKEMVNKI 216
>gi|336055415|ref|YP_004563702.1| 50S ribosomal protein L4 [Lactobacillus kefiranofaciens ZW3]
gi|333958792|gb|AEG41600.1| 50S ribosomal protein L4 [Lactobacillus kefiranofaciens ZW3]
Length = 205
Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 117/200 (58%), Gaps = 3/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + +D G + L VF + + ++ + Q A ++QGT K S V G GKK
Sbjct: 4 LKVMDQNGKDSGEVTLNDKVFGIEPNESVVFEAIIRQRAGKRQGTSKVKNRSAVRGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+RGG T+ GP PRS+A + +K RRL +K LS + + L
Sbjct: 64 PWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYAYTMPRKQRRLAIKSVLSQKLIDNDL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + L + + KTK +V+ + + KVL+ ++L+ +NL V +P GLN
Sbjct: 124 IVLDKLTMSASKTKDLVSMLSSLNVDGKVLVV---SDDNNVQLSARNLAKVKAVPVNGLN 180
Query: 281 VYSILQHDTLVMSRDAVNKI 300
V + +D L+++++AV KI
Sbjct: 181 VEDAVNYDKLILTQEAVKKI 200
>gi|260102356|ref|ZP_05752593.1| 50S ribosomal protein L4 [Lactobacillus helveticus DSM 20075]
gi|417013795|ref|ZP_11946705.1| 50S ribosomal protein L4 [Lactobacillus helveticus MTCC 5463]
gi|260083800|gb|EEW67920.1| 50S ribosomal protein L4 [Lactobacillus helveticus DSM 20075]
gi|328463365|gb|EGF35038.1| 50S ribosomal protein L4 [Lactobacillus helveticus MTCC 5463]
Length = 205
Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 116/200 (58%), Gaps = 3/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + +D G + L VF + + ++ + Q A ++QGT K S V G GKK
Sbjct: 4 LKVMDQNGKDSGEVTLNDKVFGIEPNESVVFEAIIRQRAGKRQGTSKVKNRSAVRGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+RGG T+ GP PRS+A + +K RRL +K LS + + L
Sbjct: 64 PWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYTMPRKQRRLAIKSVLSQKMIDKDL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + L + + KTK +V+ N + KVL+ ++L+ +NL V +P GLN
Sbjct: 124 IVLDKLAMSAPKTKDLVSMLNSLNVDGKVLIV---SDDNNVQLSARNLAKVKAVPVNGLN 180
Query: 281 VYSILQHDTLVMSRDAVNKI 300
V + + L++++DAV KI
Sbjct: 181 VEDAVNYGKLILTQDAVKKI 200
>gi|373106847|ref|ZP_09521147.1| 50S ribosomal protein L4 [Stomatobaculum longum]
gi|371651786|gb|EHO17212.1| 50S ribosomal protein L4 [Stomatobaculum longum]
Length = 206
Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 114/200 (57%), Gaps = 2/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G + L VF V + + ++H V QLA ++QGT KT SEVSG G+K
Sbjct: 4 VSVYNTDGKEVGTIELNDAVFGVELNEHLVHMAVVAQLANKRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ++GG + P PR + I LNKK +R L+ ALS+R E K
Sbjct: 64 PWRQKGTGHARQGSTRSPQWKGGGVVFAPTPRDYTITLNKKEKRQALRCALSSRVQEQKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V E E+ KTK + ++ K +++ + L+ +N+ V +N
Sbjct: 124 IVLESFELSEVKTKKMAETLKNLKVQKALVVAPEN--DKTTVLSARNIAGVKTASPKTIN 181
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY IL+++T+V S+D V I
Sbjct: 182 VYDILKYNTVVTSKDVVATI 201
>gi|452943479|ref|YP_007499644.1| ribosomal protein L4/L1e [Hydrogenobaculum sp. HO]
gi|452881897|gb|AGG14601.1| ribosomal protein L4/L1e [Hydrogenobaculum sp. HO]
Length = 200
Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 88/195 (45%), Positives = 116/195 (59%), Gaps = 10/195 (5%)
Query: 116 LAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTL 175
L DVF+V +K I+ VVRWQLAKR+QGTHSTKT +EV+ + KK QKGTG ARHG
Sbjct: 8 LRDDVFNVEPKKHILWDVVRWQLAKRRQGTHSTKTRAEVNCSKKKILPQKGTGNARHGAR 67
Query: 176 RGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFE----DLEVPSH 231
F GG +HGPKPR + KL+KK R++ L +ALS +A + V E LE P
Sbjct: 68 SANIFVGGGVVHGPKPRDYEYKLSKKYRKIALAMALSTKAKNNSVYVLESLLSSLEKPKT 127
Query: 232 KTKFIVNYYNQMENTKKVLLC--DGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDT 289
K F + + + KKVL+ D I K + +N+ VLP VGLNVY IL D
Sbjct: 128 KVAFELLKERGLSD-KKVLVVTEDQNDIVSK---SFKNIPNTKVLPVVGLNVYDILWADA 183
Query: 290 LVMSRDAVNKIVDRM 304
L++ + A+ KI +R+
Sbjct: 184 LLIEQGALEKIYERV 198
>gi|431918988|gb|ELK17855.1| 39S ribosomal protein L4, mitochondrial [Pteropus alecto]
Length = 294
Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 85/243 (34%), Positives = 131/243 (53%), Gaps = 11/243 (4%)
Query: 69 PDSSEGAFPSDLLLKKTVLTPDITIGLH----QDLVIPVTNFFNEDKGFMVLAGDVFDVP 124
P+ A P +L+K ++ + H Q V + + E G L DVF
Sbjct: 35 PEPLASAGPQAPVLRKC----ELPVSAHRRPVQAWVESLRGYEQERVGLAELHPDVFSTA 90
Query: 125 IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGT 184
R DI+H+V WQ ++ TKT +EV G G+KPW QKG+GRARHG++R P +RGG
Sbjct: 91 PRLDILHQVAIWQKNFKRISYAKTKTRAEVRGGGRKPWPQKGSGRARHGSIRSPLWRGGG 150
Query: 185 TMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQM 243
HGP+ P S+ L KVR GLK+AL+ + A+ L + + LE+P+ +++
Sbjct: 151 VAHGPRGPTSYYYMLPMKVRVQGLKVALTVKLAQDNLHIVDSLELPTADPQYLTELACYR 210
Query: 244 ENTKKVLLCDGGC--IHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNKIV 301
VLL D + + + AT L N++P+VGLNV+S+L+H TLV++ V +
Sbjct: 211 RWGDSVLLVDLAYEDMPQNIVAATSGLKTFNLVPAVGLNVHSMLKHQTLVLTLQTVAFLE 270
Query: 302 DRM 304
+++
Sbjct: 271 EKL 273
>gi|418315622|ref|ZP_12927079.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21340]
gi|365243062|gb|EHM83753.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21340]
Length = 207
Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 110/189 (58%), Gaps = 1/189 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ VF + ++ + Q A +QGTH+ K S VSG G+KPW+QKGTGRAR
Sbjct: 15 GSIELSDAVFGIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVSGGGRKPWKQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
GT+R PQ+RGG + GP PRS+A K+ KK+RRL L+ ALS +A E L V + +
Sbjct: 75 QGTIRAPQWRGGGIVFGPTPRSYAYKMPKKMRRLALRSALSFKAQENGLTVVDAFNFEAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KTK N + +E KKVL+ ++L+ +N+ V V + LNV I D+LV
Sbjct: 135 KTKEFKNVLSTLEQPKKVLVVTENE-DVNVELSARNIPGVQVTTAQALNVLDITNADSLV 193
Query: 292 MSRDAVNKI 300
++ A K+
Sbjct: 194 ITEAAAKKV 202
>gi|386359804|ref|YP_006058049.1| 50S ribosomal protein L4 [Thermus thermophilus JL-18]
gi|383508831|gb|AFH38263.1| 50S ribosomal protein L4, bacterial/organelle [Thermus thermophilus
JL-18]
Length = 205
Score = 140 bits (352), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 82/187 (43%), Positives = 117/187 (62%), Gaps = 7/187 (3%)
Query: 122 DVP--IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
D+P I ++ VVRWQLAKR++GT STKT EV+ +G+K W QK TGRARHG + P
Sbjct: 18 DLPAEINPHLLWEVVRWQLAKRRRGTASTKTRGEVAYSGRKIWPQKHTGRARHGDIGAPI 77
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
F GG + GPKPR ++ L KKVR+ GL +A++ RA EGKLL+ E + KTK + +
Sbjct: 78 FVGGGVVFGPKPRDYSYTLPKKVRKKGLAMAVADRAREGKLLLVEAFSGVNGKTKEFLAW 137
Query: 240 YNQ--MENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAV 297
+ ++ ++ VLL G +E ++ A +NL +V L GLNVY I++ + LVM DA
Sbjct: 138 AKEAGLDGSESVLLVTG---NELVRRAARNLPWVVTLAPEGLNVYDIVRTERLVMDLDAW 194
Query: 298 NKIVDRM 304
+R+
Sbjct: 195 EVFQNRI 201
>gi|46199629|ref|YP_005296.1| 50S ribosomal protein L4 [Thermus thermophilus HB27]
gi|161986604|ref|YP_144957.2| 50S ribosomal protein L4 [Thermus thermophilus HB8]
gi|384431871|ref|YP_005641231.1| 50S ribosomal protein L4 [Thermus thermophilus SG0.5JP17-16]
gi|81567621|sp|Q72I05.1|RL4_THET2 RecName: Full=50S ribosomal protein L4
gi|149240889|pdb|1VSA|D Chain D, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals
Functional Interactions And Rearrangements. This File,
1vsa, Contains The 50s Ribosome Subunit. 30s Ribosome
Subunit Is In The File 2ow8
gi|160285431|pdb|1VSP|D Chain D, Interactions And Dynamics Of The Shine-Dalgarno Helix In
The 70s Ribosome. This File, 1vsp, Contains The 50s
Ribosome Subunit. 30s Ribosome Subunit Is In The File
2qnh
gi|300508633|pdb|3MRZ|E Chain E, Recognition Of The Amber Stop Codon By Release Factor Rf1.
This Entry 3mrz Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 3ms0.
Molecule A In The Same Asymmetric Unit Is Deposited As
3mr8 (50s) And 3ms1 (30s).
gi|300508688|pdb|3MS1|E Chain E, Recognition Of The Amber Stop Codon By Release Factor Rf1.
This Entry 3ms1 Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 3mr8.
Molecule B In The Same Asymmetric Unit Is Deposited As
3mrz (50s) And 3ms0 (30s).
gi|46197255|gb|AAS81669.1| LSU ribosomal protein L1E [Thermus thermophilus HB27]
gi|333967339|gb|AEG34104.1| ribosomal protein L4/L1e [Thermus thermophilus SG0.5JP17-16]
Length = 205
Score = 140 bits (352), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 82/187 (43%), Positives = 117/187 (62%), Gaps = 7/187 (3%)
Query: 122 DVP--IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
D+P I ++ VVRWQLAKR++GT STKT EV+ +G+K W QK TGRARHG + P
Sbjct: 18 DLPAEINPHLLWEVVRWQLAKRRRGTASTKTRGEVAYSGRKIWPQKHTGRARHGDIGAPI 77
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
F GG + GPKPR ++ L KKVR+ GL +A++ RA EGKLL+ E + KTK + +
Sbjct: 78 FVGGGVVFGPKPRDYSYTLPKKVRKKGLAMAVADRAREGKLLLVEAFAGVNGKTKEFLAW 137
Query: 240 YNQ--MENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAV 297
+ ++ ++ VLL G +E ++ A +NL +V L GLNVY I++ + LVM DA
Sbjct: 138 AKEAGLDGSESVLLVTG---NELVRRAARNLPWVVTLAPEGLNVYDIVRTERLVMDLDAW 194
Query: 298 NKIVDRM 304
+R+
Sbjct: 195 EVFQNRI 201
>gi|253577180|ref|ZP_04854500.1| 50S ribosomal protein L4/L1 [Paenibacillus sp. oral taxon 786 str.
D14]
gi|251843424|gb|EES71452.1| 50S ribosomal protein L4/L1 [Paenibacillus sp. oral taxon 786 str.
D14]
Length = 207
Score = 140 bits (352), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 119/203 (58%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN G + L VF + ++H V Q A + GTH K SEV G
Sbjct: 1 MPKVALFNISGSQVGEVELNDAVFGIEPNTHVLHEAVVMQRASLRFGTHKVKGRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPW+QKGTGRAR G++R PQ++GG T+ GP PRS++ KL KKVRRL +K ALS++ +
Sbjct: 61 GRKPWKQKGTGRARQGSIRAPQWKGGGTVFGPTPRSYSYKLPKKVRRLAIKSALSSKVID 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++V + L + + KTK N ++ +K L+ + + L+ +N+ V + +
Sbjct: 121 QDIIVLDALAMNAPKTKEFAAILNNLKVERKALVV-APDYDDNIALSARNIPGVKFVAAD 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
G+NV +L HD L+++++AV K+
Sbjct: 180 GINVLDVLTHDKLIITKEAVQKV 202
>gi|162449113|ref|YP_001611480.1| hypothetical protein sce0843 [Sorangium cellulosum So ce56]
gi|161159695|emb|CAN91000.1| rplD [Sorangium cellulosum So ce56]
Length = 207
Score = 140 bits (352), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 119/203 (58%), Gaps = 1/203 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N E G + L+ +VF +++ + + VV+ QLA R+ GT +TK S V+G+ KK
Sbjct: 3 VTVYNLKREQVGELDLSDEVFGTEVKEHLFYEVVKAQLASRRSGTKATKERSAVAGSTKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
+RQKGTGRAR G++R P GG H +P+ + + +KVR LK ALS A EG+L
Sbjct: 63 LYRQKGTGRARQGSIRAPHHAGGGMAHALEPKDWSYRPPRKVRIGALKSALSLFAKEGRL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + LEV KTK I ++ +K L+ D ++KL + +NL LP G+N
Sbjct: 123 IVLDSLEVSEIKTKAIAATLTTLQADRKSLVVDTAG-NDKLVKSLRNLENHQYLPPEGVN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDR 303
VY +L+HD L++SRDA + R
Sbjct: 182 VYDLLRHDHLIVSRDAAKALEAR 204
>gi|412987813|emb|CCO19209.1| 50S ribosomal protein L4 [Bathycoccus prasinos]
Length = 340
Score = 140 bits (352), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 84/158 (53%), Positives = 101/158 (63%), Gaps = 16/158 (10%)
Query: 90 DITIGLHQDLVIPV----------TNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLA 139
D+ G +D +P+ + F+E +VL G FDVPIR DI HR VRWQLA
Sbjct: 99 DVEQGEMRDKTVPIHASAHIIEEKESSFDEK---IVLPGRHFDVPIRIDIAHRCVRWQLA 155
Query: 140 -KRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKL 198
KR T TK+ EVSGT +K QKG GRAR G+LR PQ RGG T HGP PR KL
Sbjct: 156 RKRGVSTAKTKSRGEVSGTTRKARPQKGGGRARVGSLRAPQMRGGGTAHGPIPRDFEHKL 215
Query: 199 NKKVRRLGLKIALSARAAEGKLLVFEDLE--VPSHKTK 234
KKVRRLGL++ALSA+AAEG+L+V EDL+ P+ KTK
Sbjct: 216 QKKVRRLGLRVALSAKAAEGRLVVVEDLKWMSPTGKTK 253
>gi|336322753|ref|YP_004602720.1| 50S ribosomal protein L4 [Flexistipes sinusarabici DSM 4947]
gi|336106334|gb|AEI14152.1| ribosomal protein L4/L1e [Flexistipes sinusarabici DSM 4947]
Length = 208
Score = 140 bits (352), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 74/187 (39%), Positives = 115/187 (61%), Gaps = 1/187 (0%)
Query: 116 LAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTL 175
++ + D P + ++H VV+ QLA R+ GTH+TK + +SG GKKPWRQKGTGRAR G+
Sbjct: 19 ISEQLMDYPEKPWLVHEVVKMQLAGRRAGTHATKNRANISGGGKKPWRQKGTGRARAGSS 78
Query: 176 RGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKF 235
R P + GG TM GP+PRS+A K+ KK R LK A S++ +G + +F+ L + KTK
Sbjct: 79 RSPLWVGGATMFGPQPRSYAYKMPKKKVRSALKSAFSSKLKDGSVKIFDKLATENGKTKE 138
Query: 236 IVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRD 295
+++ + VL+ EKL A +N+ YV +L GLNVY + + ++MS++
Sbjct: 139 AAEILAKLKAERNVLVL-FTEYDEKLIKAFRNIPYVKLLNVQGLNVYDTVHAENILMSQE 197
Query: 296 AVNKIVD 302
+ +++
Sbjct: 198 CLQNVME 204
>gi|374074449|pdb|3UXQ|F Chain F, The Structure Of Thermorubin In Complex With The 70s
Ribosome From Thermus Thermophilus. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
gi|374074479|pdb|3UXR|F Chain F, The Structure Of Thermorubin In Complex With The 70s
Ribosome From Thermus Thermophilus. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes
Length = 205
Score = 140 bits (352), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 82/187 (43%), Positives = 117/187 (62%), Gaps = 7/187 (3%)
Query: 122 DVP--IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
D+P I ++ VVRWQLAKR++GT STKT EV+ +G+K W QK TGRARHG + P
Sbjct: 18 DLPAEINPHLLWEVVRWQLAKRRRGTASTKTRGEVAYSGRKIWPQKHTGRARHGDIGAPI 77
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
F GG + GPKPR ++ L KKVR+ GL +A++ RA EGKLL+ E + KTK + +
Sbjct: 78 FVGGGVVFGPKPRDYSYTLPKKVRKKGLAMAVADRAREGKLLLVEAFAGVNGKTKEFLAW 137
Query: 240 YNQ--MENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAV 297
+ ++ ++ VLL G +E ++ A +NL +V L GLNVY I++ + LVM DA
Sbjct: 138 AKEAGLDGSESVLLVTG---NELVRRAARNLPWVVTLAPEGLNVYDIVRTERLVMDLDAW 194
Query: 298 NKIVDRM 304
+R+
Sbjct: 195 EVFQNRI 201
>gi|328725484|ref|XP_003248496.1| PREDICTED: 50S ribosomal protein L4-like [Acyrthosiphon pisum]
Length = 267
Score = 140 bits (352), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 76/190 (40%), Positives = 116/190 (61%), Gaps = 3/190 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L VF + + ++ V Q A +QGTH+ K S V G G+KPW+QKGTGRAR
Sbjct: 75 GSIELNDSVFGIEPNQHVLFEAVNLQRASLRQGTHAVKNRSAVRGGGRKPWKQKGTGRAR 134
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
GT+R PQ+RGG + GP PRS++ K+ KK+RRL L+ ALS++ + +L V E +
Sbjct: 135 QGTIRAPQWRGGGIVFGPTPRSYSYKMPKKMRRLALRSALSSKVSGNELTVLEAFNFDAP 194
Query: 232 KTKFIVNYYNQMENTKKVL-LCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTL 290
KTK N + +E +KKVL + D + ++L+ +N+ V V+ + LNV IL +
Sbjct: 195 KTKEFKNVMSNLELSKKVLFIVD--TVDSNVELSARNIPGVKVIDAQSLNVLDILDSSKV 252
Query: 291 VMSRDAVNKI 300
V+++ AV+K+
Sbjct: 253 VITKAAVDKV 262
>gi|322812576|pdb|3PYO|E Chain E, Crystal Structure Of A Complex Containing Domain 3 From
The Psiv Igr Ires Rna Bound To The 70s Ribosome. This
File Contains The 50s Subunit Of The First 70s Ribosome.
gi|322812629|pdb|3PYR|E Chain E, Crystal Structure Of A Complex Containing Domain 3 From
The Psiv Igr Ires Rna Bound To The 70s Ribosome. This
File Contains The 50s Subunit Of The Second 70s
Ribosome.
gi|322812682|pdb|3PYT|E Chain E, Crystal Structure Of A Complex Containing Domain 3 Of Crpv
Igr Ires Rna Bound To The 70s Ribosome. This File
Contains The 50s Subunit Of The First 70s Ribosome.
gi|322812735|pdb|3PYV|E Chain E, Crystal Structure Of A Complex Containing Domain 3 Of Crpv
Igr Ires Rna Bound To The 70s Ribosome. This File
Contains The 50s Subunit Of The Second 70s Ribosome
Length = 202
Score = 140 bits (352), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 82/187 (43%), Positives = 117/187 (62%), Gaps = 7/187 (3%)
Query: 122 DVP--IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
D+P I ++ VVRWQLAKR++GT STKT EV+ +G+K W QK TGRARHG + P
Sbjct: 18 DLPAEINPHLLWEVVRWQLAKRRRGTASTKTRGEVAYSGRKIWPQKHTGRARHGDIGAPI 77
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
F GG + GPKPR ++ L KKVR+ GL +A++ RA EGKLL+ E + KTK + +
Sbjct: 78 FVGGGVVFGPKPRDYSYTLPKKVRKKGLAMAVADRAREGKLLLVEAFAGVNGKTKEFLAW 137
Query: 240 YNQ--MENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAV 297
+ ++ ++ VLL G +E ++ A +NL +V L GLNVY I++ + LVM DA
Sbjct: 138 AKEAGLDGSESVLLVTG---NELVRRAARNLPWVVTLAPEGLNVYDIVRTERLVMDLDAW 194
Query: 298 NKIVDRM 304
+R+
Sbjct: 195 EVFQNRI 201
>gi|161506874|ref|YP_001576828.1| 50S ribosomal protein L4 [Lactobacillus helveticus DPC 4571]
gi|172048368|sp|A8YXK6.1|RL4_LACH4 RecName: Full=50S ribosomal protein L4
gi|160347863|gb|ABX26537.1| 50S ribosomal protein L4 [Lactobacillus helveticus DPC 4571]
Length = 205
Score = 140 bits (352), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 116/200 (58%), Gaps = 3/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + +D G + L VF + + ++ + Q A ++QGT K S V G GKK
Sbjct: 4 LKVMDQNGKDSGEVTLNDKVFGIEPNESVVFETIIRQRAGKRQGTSKVKNRSAVRGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+RGG T+ GP PRS+A + +K RRL +K LS + + L
Sbjct: 64 PWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYTMPRKQRRLAIKSVLSQKMIDKDL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + L + + KTK +V+ N + KVL+ ++L+ +NL V +P GLN
Sbjct: 124 IVLDKLAMSAPKTKDLVSMLNSLNVDGKVLIV---SDDNNVQLSARNLAKVKAVPVNGLN 180
Query: 281 VYSILQHDTLVMSRDAVNKI 300
V + + L++++DAV KI
Sbjct: 181 VEDAVNYGKLILTQDAVKKI 200
>gi|1033073|gb|AAA97862.1| ribosomal protein L4 [Thermus thermophilus HB8]
gi|1586538|prf||2204237A ribosomal protein L4
Length = 210
Score = 140 bits (352), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 82/187 (43%), Positives = 117/187 (62%), Gaps = 7/187 (3%)
Query: 122 DVP--IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
D+P I ++ VVRWQLAKR++GT STKT EV+ +G+K W QK TGRARHG + P
Sbjct: 23 DLPAEINPHLLWEVVRWQLAKRRRGTASTKTRGEVAYSGRKIWPQKHTGRARHGDIGAPI 82
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
F GG + GPKPR ++ L KKVR+ GL +A++ RA EGKLL+ E + KTK + +
Sbjct: 83 FVGGGVVFGPKPRDYSYTLPKKVRKKGLAMAVADRAREGKLLLVEAFAGVNGKTKEFLAW 142
Query: 240 YNQ--MENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAV 297
+ ++ ++ VLL G +E ++ A +NL +V L GLNVY I++ + LVM DA
Sbjct: 143 AKEAGLDGSESVLLVTG---NELVRRAARNLPWVVTLAPEGLNVYDIVRTERLVMDLDAW 199
Query: 298 NKIVDRM 304
+R+
Sbjct: 200 EVFQNRI 206
>gi|323703547|ref|ZP_08115193.1| ribosomal protein L4/L1e [Desulfotomaculum nigrificans DSM 574]
gi|333922449|ref|YP_004496029.1| 50S ribosomal protein L4 [Desulfotomaculum carboxydivorans
CO-1-SRB]
gi|323531538|gb|EGB21431.1| ribosomal protein L4/L1e [Desulfotomaculum nigrificans DSM 574]
gi|333748010|gb|AEF93117.1| ribosomal protein L4/L1e [Desulfotomaculum carboxydivorans
CO-1-SRB]
Length = 206
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 124/200 (62%), Gaps = 2/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N E G + L +VF + + ++H VV LA ++QGTH TKT +EV G G+K
Sbjct: 4 VALYNISGEQIGEVELKDEVFGIEPNEAVMHDVVVMHLANQRQGTHDTKTRAEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G+ R P +R G + GP PR ++ L KKVRRL LK ALS++ + +
Sbjct: 64 PWRQKGTGRARAGSSRSPIWRKGGIVFGPHPRDYSYSLPKKVRRLALKSALSSKVLDDNI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + L + KTK +V+ ++ K +++ I+ ++ + +N+ V + + G++
Sbjct: 124 IVLDKLTMEVPKTKEMVSILANLKADKALVVTADRDIN--VEKSARNIPGVKPVKAGGVS 181
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY +L++D LV+++DAV KI
Sbjct: 182 VYDLLKYDKLVITKDAVAKI 201
>gi|395243252|ref|ZP_10420239.1| 50S ribosomal protein L4 [Lactobacillus hominis CRBIP 24.179]
gi|394484482|emb|CCI81247.1| 50S ribosomal protein L4 [Lactobacillus hominis CRBIP 24.179]
Length = 205
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 116/189 (61%), Gaps = 3/189 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++F + + ++ + Q A ++QGT + K S V G GKKPWRQKGTGRAR
Sbjct: 15 GNVDLNEEIFGIEPNESVVFDAIIRQRAGKRQGTSAVKNRSAVRGGGKKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+RGG + GP PRS+ I + +K RRL +K LS + A+ L+V + L + +
Sbjct: 75 QGSIRAPQWRGGGVVFGPTPRSYKIDMPRKARRLAMKSVLSQKVADNDLIVLDQLTLDAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KTK + + + + KVL+ +E +KL+ +NL V V+P GLN+ + ++ L+
Sbjct: 135 KTKDLKTILDSAKASGKVLII---SDNENVKLSGKNLKNVKVIPVEGLNIVDAVNYEKLL 191
Query: 292 MSRDAVNKI 300
+++DA+ +I
Sbjct: 192 LTQDALKRI 200
>gi|381191148|ref|ZP_09898659.1| 50S ribosomal protein L4 [Thermus sp. RL]
gi|62287203|sp|Q5SHN9.1|RL4_THET8 RecName: Full=50S ribosomal protein L4; AltName: Full=L1e
gi|116668237|pdb|2J01|F Chain F, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4).
This File Contains The 50s Subunit From Molecule I.
gi|116668298|pdb|2J03|F Chain F, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 4 Of 4).
This File Contains The 50s Subunit From Molecule Ii.
gi|119389738|pdb|2HGJ|F Chain F, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
Showing How The 16s 3'-End Mimicks Mrna E And P Codons.
This Entry 2hgj Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgi.
gi|119389795|pdb|2HGQ|F Chain F, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
With Translocated And Rotated Shine-Dalgarno Duplex.
This Entry 2hgq Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgp.
gi|119389851|pdb|2HGU|F Chain F, 70s T.Th. Ribosome Functional Complex With Mrna And E- And
P-Site Trnas At 4.5a. This Entry 2hgu Contains 50s
Ribosomal Subunit. The 30s Ribosomal Subunit Can Be
Found In Pdb Entry 2hgr.
gi|157836524|pdb|2V47|F Chain F, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
Trna-Fmet (Part 2 Of 4). This File Contains The 50s
Subunit For Molecule 1.
gi|157836580|pdb|2V49|F Chain F, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
Trna-Fmet (Part 4 Of 4). This File Contains The 50s
Subunit Of Molecule 2.
gi|226887439|pdb|2WDI|F Chain F, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 50s Subunit For Molecule I.
gi|226887471|pdb|2WDJ|F Chain F, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 50s Subunit For Molecule Ii.
gi|226887528|pdb|2WDL|F Chain F, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 50s
Subunit For Molecule I.
gi|226887585|pdb|2WDN|F Chain F, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 50s
Subunit For Molecule Ii.
gi|237823569|pdb|2WH2|F Chain F, Insights Into Translational Termination From The Structure
Of Rf2 Bound To The Ribosome
gi|237823628|pdb|2WH4|F Chain F, Insights Into Translational Termination From The Structure
Of Rf2 Bound To The Ribosome
gi|260100015|pdb|3HUX|F Chain F, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 50s Subunit For Molecule I.
gi|260100071|pdb|3HUZ|F Chain F, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 50s Subunit For Molecule Ii.
gi|261824524|pdb|2WRJ|F Chain F, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 2 Of 4).
gi|261824586|pdb|2WRL|F Chain F, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State. (Part 4 Of
4).
gi|261824649|pdb|2WRO|F Chain F, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 2 Of 4).
gi|261824708|pdb|2WRR|F Chain F, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 4 Of 4).
gi|281307196|pdb|3KIR|F Chain F, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 2 Of 4)
gi|281307254|pdb|3KIT|F Chain F, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 4 Of 4)
gi|281307312|pdb|3KIW|F Chain F, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 2 Of 4)
gi|281307370|pdb|3KIY|F Chain F, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 4 Of 4)
gi|288965634|pdb|3KNI|F Chain F, The Structures Of Viomycin Bound To The 70s Ribosome. This
File Contains The 50s Subunit For Molecule I
gi|288965666|pdb|3KNK|F Chain F, The Structures Of Viomycin Bound To The 70s Ribosome. This
File Contains The 50s Subunit For Molecule Ii.
gi|288965698|pdb|3KNM|F Chain F, The Structures Of Capreomycin Bound To The 70s Ribosome.
Thi Contains The 50s Subunit For Molecule I.
gi|288965730|pdb|3KNO|F Chain F, The Structures Of Capreomycin Bound To The 70s Ribosome.
Thi Contains The 50s Subunit For Molecule Ii
gi|294979478|pdb|3I8F|F Chain F, Elongation Complex Of The 70s Ribosome With Three Trnas
And Entry 3i8f Contains 50s Ribosomal Subunit. The 30s
Ribosoma Can Be Found In Pdb Entry 3i8g. Molecule B In
The Same Asym Unit Is Deposited As 3i8g (30s) And 3i8f
(50s).
gi|294979558|pdb|3I8I|F Chain F, Elongation Complex Of The 70s Ribosome With Three Trnas
And Entry 3i8i Contains 50s Ribosomal Subnit. The 30s
Ribosomal Can Be Found In Pdb Entry 3i8h. Molecule A In
The Same Asym Unit Is Deposited As 3i8f (50s) And 3i8g
(30s).
gi|294979616|pdb|3I9C|F Chain F, Initiation Complex Of 70s Ribosome With Two Trnas And
Mrna. 3i9c Contains 50s Ribosomal Subunit Of Molecule B.
The 30s Subunit Can Be Found In Pdb Entry 3i9b. Molecule
A In The S Asymmetric Unit Is Deposited As 3i9d (30s)
And 3i9e (50s)
gi|294979670|pdb|3I9E|F Chain F, Initiation Complex Of 70s Ribosome With Two Trnas And
Mrna. 3i9e Contains 50s Ribosomal Subunit Of Molecule A.
The 30s Subunit Can Be Found In Pdb Entry 3i9d. Molecule
B In The S Asymmetric Unit Is Deposited As 3i9b (30s)
And 3i9c (50s)
gi|295982115|pdb|2X9S|F Chain F, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
gi|295982174|pdb|2X9U|F Chain F, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
gi|307568002|pdb|2XG0|F Chain F, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 2 Of 4)
gi|307568060|pdb|2XG2|F Chain F, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 4 Of 4)
gi|309320290|pdb|3OH5|F Chain F, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Chloramphenicol. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
gi|309320320|pdb|3OH7|F Chain F, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Chloramphenicol. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
gi|309320392|pdb|3OHJ|F Chain F, Structure Of The Thermus Thermophilus Ribosome Complexed
With Erythromycin. This File Contains The 50s Subunit Of
One 70s Ribosome. The Entire Crystal Structure Contains
Two 70s Ribosomes.
gi|309320422|pdb|3OHK|F Chain F, Structure Of The Thermus Thermophilus Ribosome Complexed
With Erythromycin. This File Contains The 50s Subunit Of
One 70s Ribosome. The Entire Crystal Structure Contains
Two 70s Ribosomes.
gi|309320473|pdb|3OHZ|F Chain F, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Azithromycin. This File Contains The 50s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
gi|309320524|pdb|3OI1|F Chain F, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Azithromycin. This File Contains The 50s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
gi|309320575|pdb|3OI3|F Chain F, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Telithromycin. This File Contains The 50s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
gi|309320626|pdb|3OI5|F Chain F, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Telithromycin. This File Contains The 50s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
gi|312207714|pdb|2XQE|F Chain F, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
gi|313754038|pdb|2XTG|F Chain F, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
gi|313754096|pdb|2XUX|F Chain F, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
gi|325533443|pdb|2Y0V|F Chain F, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
gi|325533502|pdb|2Y0X|F Chain F, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
gi|325533561|pdb|2Y0Z|F Chain F, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
gi|325533620|pdb|2Y11|F Chain F, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
gi|325533679|pdb|2Y13|F Chain F, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
gi|325533738|pdb|2Y15|F Chain F, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
gi|325533797|pdb|2Y17|F Chain F, Ef-Tu Complex 3
gi|325533856|pdb|2Y19|F Chain F, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
gi|347948834|pdb|3ZVP|F Chain F, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
gi|380764373|pdb|3UYE|F Chain F, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex
gi|380764430|pdb|3UYG|F Chain F, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex
gi|380764464|pdb|3UZ1|F Chain F, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex With Paromomycin
gi|380764494|pdb|3UZ2|F Chain F, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex With Paromomycin.
gi|380764626|pdb|3UZ8|F Chain F, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex.
gi|380764656|pdb|3UZ9|F Chain F, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex.
gi|380764690|pdb|3UZF|F Chain F, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
gi|380764746|pdb|3UZH|F Chain F, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex.
gi|380764802|pdb|3UZK|F Chain F, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
gi|380764883|pdb|3UZN|F Chain F, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-cognate
Trna-tyr Complex With Paromomycin
gi|381353129|pdb|4ABS|F Chain F, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
gi|381353220|pdb|4DHA|F Chain F, Crystal Structure Of Yaej Bound To The 70s Ribosome
gi|381353274|pdb|4DHC|F Chain F, Crystal Structure Of Yaej Bound To The 70s Ribosome
gi|388325969|pdb|3V23|F Chain F, Crystal Structure Of Rmf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 1st Ribosome In The Asu
gi|388326022|pdb|3V25|F Chain F, Crystal Structure Of Rmf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 2nd Ribosome In The Asu
gi|388326075|pdb|3V27|F Chain F, Crystal Structure Of Hpf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 1st Ribosome In The Asu
gi|388326198|pdb|3V29|F Chain F, Crystal Structure Of Hpf Bound To The 70s Ribosome. This
Entry Contains The 50s Subunit Of The 2nd Molecule In
The Asu.
gi|388326251|pdb|3V2D|F Chain F, Crystal Structure Of Yfia Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 1st Ribosome In The Asu
gi|388326304|pdb|3V2F|F Chain F, Crystal Structure Of Yfia Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 2nd Ribosome In The Asu
gi|451928716|pdb|4G5L|F Chain F, Crystal Structure Of The 70s Ribosome With Tetracycline.
This Entry Contains The 50s Subunit Of Molecule A.
gi|451928769|pdb|4G5N|F Chain F, Crystal Structure Of The 70s Ribosome With Tetracycline.
This Entry Contains The 50s Subunit Of Molecule B.
gi|451928823|pdb|4G5U|F Chain F, Crystal Structure Of The 70s Ribosome With Tigecycline.
This Entry Contains The 50s Subunit Of Molecule A.
gi|451928877|pdb|4G5W|F Chain F, Crystal Structure Of The 70s Ribosome With Tigecycline.
This Entry Contains The 50s Subunit Of Molecule B.
gi|55773073|dbj|BAD71514.1| 50S ribosomal protein L4 [Thermus thermophilus HB8]
gi|380450937|gb|EIA38550.1| 50S ribosomal protein L4 [Thermus sp. RL]
Length = 210
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/187 (43%), Positives = 117/187 (62%), Gaps = 7/187 (3%)
Query: 122 DVP--IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
D+P I ++ VVRWQLAKR++GT STKT EV+ +G+K W QK TGRARHG + P
Sbjct: 23 DLPAEINPHLLWEVVRWQLAKRRRGTASTKTRGEVAYSGRKIWPQKHTGRARHGDIGAPI 82
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
F GG + GPKPR ++ L KKVR+ GL +A++ RA EGKLL+ E + KTK + +
Sbjct: 83 FVGGGVVFGPKPRDYSYTLPKKVRKKGLAMAVADRAREGKLLLVEAFAGVNGKTKEFLAW 142
Query: 240 YNQ--MENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAV 297
+ ++ ++ VLL G +E ++ A +NL +V L GLNVY I++ + LVM DA
Sbjct: 143 AKEAGLDGSESVLLVTG---NELVRRAARNLPWVVTLAPEGLNVYDIVRTERLVMDLDAW 199
Query: 298 NKIVDRM 304
+R+
Sbjct: 200 EVFQNRI 206
>gi|191639427|ref|YP_001988593.1| 50S ribosomal protein L4 [Lactobacillus casei BL23]
gi|227533961|ref|ZP_03964010.1| 50S ribosomal protein L4 [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|239630350|ref|ZP_04673381.1| 50S ribosomal protein L4 [Lactobacillus paracasei subsp. paracasei
8700:2]
gi|301067502|ref|YP_003789525.1| 50S ribosomal protein L4 [Lactobacillus casei str. Zhang]
gi|385821189|ref|YP_005857576.1| 50S ribosomal protein L4 [Lactobacillus casei LC2W]
gi|385824382|ref|YP_005860724.1| 50S ribosomal protein L4 [Lactobacillus casei BD-II]
gi|409998286|ref|YP_006752687.1| 50S ribosomal protein L4 [Lactobacillus casei W56]
gi|417981690|ref|ZP_12622355.1| LSU ribosomal protein L4p (L1e) [Lactobacillus casei 12A]
gi|417984507|ref|ZP_12625129.1| LSU ribosomal protein L4p (L1e) [Lactobacillus casei 21/1]
gi|417987764|ref|ZP_12628318.1| LSU ribosomal protein L4p (L1e) [Lactobacillus casei 32G]
gi|417990801|ref|ZP_12631266.1| LSU ribosomal protein L4p (L1e) [Lactobacillus casei A2-362]
gi|417994124|ref|ZP_12634459.1| LSU ribosomal protein L4p (L1e) [Lactobacillus casei CRF28]
gi|417995423|ref|ZP_12635716.1| LSU ribosomal protein L4p (L1e) [Lactobacillus casei M36]
gi|418000145|ref|ZP_12640343.1| LSU ribosomal protein L4p (L1e) [Lactobacillus casei T71499]
gi|418003284|ref|ZP_12643375.1| LSU ribosomal protein L4p (L1e) [Lactobacillus casei UCD174]
gi|418006319|ref|ZP_12646278.1| LSU ribosomal protein L4p (L1e) [Lactobacillus casei UW1]
gi|418011886|ref|ZP_12651635.1| LSU ribosomal protein L4p (L1e) [Lactobacillus casei Lc-10]
gi|418014985|ref|ZP_12654569.1| LSU ribosomal protein L4p (L1e) [Lactobacillus casei Lpc-37]
gi|226730677|sp|B3WAL6.1|RL4_LACCB RecName: Full=50S ribosomal protein L4
gi|190713729|emb|CAQ67735.1| 50S ribosomal protein L4 [Lactobacillus casei BL23]
gi|227188338|gb|EEI68405.1| 50S ribosomal protein L4 [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|239527962|gb|EEQ66963.1| 50S ribosomal protein L4 [Lactobacillus paracasei subsp. paracasei
8700:2]
gi|300439909|gb|ADK19675.1| Ribosomal protein L4 [Lactobacillus casei str. Zhang]
gi|327383516|gb|AEA54992.1| 50S ribosomal protein L4 [Lactobacillus casei LC2W]
gi|327386709|gb|AEA58183.1| 50S ribosomal protein L4 [Lactobacillus casei BD-II]
gi|406359298|emb|CCK23568.1| 50S ribosomal protein L4 [Lactobacillus casei W56]
gi|410521829|gb|EKP96787.1| LSU ribosomal protein L4p (L1e) [Lactobacillus casei 12A]
gi|410522586|gb|EKP97530.1| LSU ribosomal protein L4p (L1e) [Lactobacillus casei 32G]
gi|410525301|gb|EKQ00204.1| LSU ribosomal protein L4p (L1e) [Lactobacillus casei 21/1]
gi|410530780|gb|EKQ05548.1| LSU ribosomal protein L4p (L1e) [Lactobacillus casei CRF28]
gi|410533659|gb|EKQ08327.1| LSU ribosomal protein L4p (L1e) [Lactobacillus casei A2-362]
gi|410537391|gb|EKQ11966.1| LSU ribosomal protein L4p (L1e) [Lactobacillus casei T71499]
gi|410537560|gb|EKQ12133.1| LSU ribosomal protein L4p (L1e) [Lactobacillus casei M36]
gi|410542661|gb|EKQ17096.1| LSU ribosomal protein L4p (L1e) [Lactobacillus casei UCD174]
gi|410544243|gb|EKQ18579.1| LSU ribosomal protein L4p (L1e) [Lactobacillus casei UW1]
gi|410551502|gb|EKQ25560.1| LSU ribosomal protein L4p (L1e) [Lactobacillus casei Lc-10]
gi|410552507|gb|EKQ26531.1| LSU ribosomal protein L4p (L1e) [Lactobacillus casei Lpc-37]
Length = 207
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 117/193 (60%), Gaps = 5/193 (2%)
Query: 110 DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGR 169
+ G + L ++ V ++++ V Q A +QGTH+ K S VSG G+KPWRQKGTGR
Sbjct: 13 ENGKVELNDAIWAVEPNENVVFDAVVMQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTGR 72
Query: 170 ARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVP 229
AR G++R PQ+RGG + GP PRS+A KL KKVRRL +K LS + + L+V + L
Sbjct: 73 ARQGSIRSPQWRGGGIVFGPTPRSYAYKLPKKVRRLAIKSVLSQKVLDSDLVVVDGLNFD 132
Query: 230 SHKTKFIVNYYNQMENTKK--VLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQH 287
+ KTK + ++ + K V+L DG + K A +NL V V+P+ G+NV ++ +
Sbjct: 133 APKTKAFATVLDGLKVSDKALVVLEDGNEVAAK---AARNLPNVKVVPAEGINVLDVVDY 189
Query: 288 DTLVMSRDAVNKI 300
L++++ A+ KI
Sbjct: 190 KKLILTQSALQKI 202
>gi|380764215|pdb|3TVE|F Chain F, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Leu Complex
Length = 202
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/187 (43%), Positives = 117/187 (62%), Gaps = 7/187 (3%)
Query: 122 DVP--IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
D+P I ++ VVRWQLAKR++GT STKT EV+ +G+K W QK TGRARHG + P
Sbjct: 18 DLPAEINPHLLWEVVRWQLAKRRRGTASTKTRGEVAYSGRKIWPQKHTGRARHGDIGAPI 77
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
F GG + GPKPR ++ L KKVR+ GL +A++ RA EGKLL+ E + KTK + +
Sbjct: 78 FVGGGVVFGPKPRDYSYTLPKKVRKKGLAMAVADRAREGKLLLVEAFAGVNGKTKEFLAW 137
Query: 240 YNQ--MENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAV 297
+ ++ ++ VLL G +E ++ A +NL +V L GLNVY I++ + LVM DA
Sbjct: 138 AKEAGLDGSESVLLVTG---NELVRRAARNLPWVVTLAPEGLNVYDIVRTERLVMDLDAW 194
Query: 298 NKIVDRM 304
+R+
Sbjct: 195 EVFQNRI 201
>gi|260655382|ref|ZP_05860870.1| ribosomal protein L4/L1 family protein [Jonquetella anthropi E3_33
E1]
gi|424845194|ref|ZP_18269805.1| 50S ribosomal protein L4, bacterial/organelle [Jonquetella anthropi
DSM 22815]
gi|260629830|gb|EEX48024.1| ribosomal protein L4/L1 family protein [Jonquetella anthropi E3_33
E1]
gi|363986632|gb|EHM13462.1| 50S ribosomal protein L4, bacterial/organelle [Jonquetella anthropi
DSM 22815]
Length = 207
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 112/194 (57%), Gaps = 2/194 (1%)
Query: 100 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
VI + NF E G + L+ VF VP IH+VV Q A +QGT K EV G G+
Sbjct: 3 VIKILNFAGEVVGDLELSDAVFGVPFHSSAIHQVVVAQQANARQGTACAKDRGEVRGGGR 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
KPWRQK TGRAR G++R P + GG +HGPKPR + +K+NKKVR L ++ ALS RA E +
Sbjct: 63 KPWRQKHTGRARAGSIRSPLWAGGGVVHGPKPRDYFLKVNKKVRALAMRSALSVRAGESR 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGL 279
L E + + TK ++++ + K +++ D +E + + N+ V VL +
Sbjct: 123 LFAVEGFSLEAPSTKKMLSFLAAVGARKPLIVLD--SRNENVIRSAANIQGVKVLHMDSI 180
Query: 280 NVYSILQHDTLVMS 293
NV +++HD LV +
Sbjct: 181 NVLDLVRHDGLVAT 194
>gi|82697333|ref|NP_001032527.1| 39S ribosomal protein L4, mitochondrial [Bos taurus]
gi|108864722|sp|Q32PI6.1|RM04_BOVIN RecName: Full=39S ribosomal protein L4, mitochondrial; Short=L4mt;
Short=MRP-L4
gi|81294225|gb|AAI08103.1| Mitochondrial ribosomal protein L4 [Bos taurus]
gi|296485803|tpg|DAA27918.1| TPA: 39S ribosomal protein L4, mitochondrial [Bos taurus]
Length = 294
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 89/261 (34%), Positives = 138/261 (52%), Gaps = 16/261 (6%)
Query: 53 GLSFLASRKFSTTILTPDSSEGAFPSDLLLKKTVLTPDITIGLH----QDLVIPVTNFFN 108
GLS L + P+ A P +L++ ++ + LH Q V + +
Sbjct: 20 GLSALTEEAVQSAE-KPEPLANAGPQAPVLRRC----ELPVPLHRRPVQAWVESLRGYEQ 74
Query: 109 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTG 168
E G L DVF R DI+H+V WQ ++ TKT +EV G G+KPW+QKG+G
Sbjct: 75 ERVGLTELHPDVFSTAPRLDILHQVAIWQKNFKRISYAKTKTRAEVRGGGRKPWQQKGSG 134
Query: 169 RARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLE 227
RARHG++R P +RGG HGP+ P S+ L KVR GLK+AL+ + A+ L + + LE
Sbjct: 135 RARHGSIRSPIWRGGGVAHGPRGPTSYYYMLPMKVRVQGLKVALTVKLAQDDLHIVDSLE 194
Query: 228 VPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLK----LATQNLHYVNVLPSVGLNVYS 283
+P+ ++++ VL D HE + AT L N++P++GLNV+S
Sbjct: 195 LPTTDPQYLMELARYRRWGDSVLFVD--LEHEDMPQNVVAATSGLKTFNLIPAIGLNVHS 252
Query: 284 ILQHDTLVMSRDAVNKIVDRM 304
+L+H TLV++ V + +++
Sbjct: 253 MLKHQTLVLTLPTVAFLEEKL 273
>gi|334338902|ref|YP_004543882.1| 50S ribosomal protein L4 [Desulfotomaculum ruminis DSM 2154]
gi|334090256|gb|AEG58596.1| ribosomal protein L4/L1e [Desulfotomaculum ruminis DSM 2154]
Length = 206
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 121/200 (60%), Gaps = 2/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N E G + L +F + + ++H V QLA ++QGTH TKT +EV G G+K
Sbjct: 4 VALYNISGEQVGEVELNDAIFGIEPNEPVLHDAVVMQLANQRQGTHDTKTRAEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G+ R P +R G + GP PR ++ L KKVRRL LK ALS++ + +
Sbjct: 64 PWRQKGTGRARAGSTRSPIWRSGGVVFGPHPRDYSYSLPKKVRRLALKSALSSKVLDNDI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + L + + KTK + ++ K +++ ++ ++ + +N+ V L + G+N
Sbjct: 124 IVLDGLTMDAPKTKEMSRILGNLKADKALVVTADRDVN--VEKSARNIEGVKPLKAEGVN 181
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY +L++ LV+++DAV KI
Sbjct: 182 VYDLLKYTKLVITKDAVAKI 201
>gi|395238078|ref|ZP_10416057.1| 50S ribosomal protein L4 [Turicella otitidis ATCC 51513]
gi|423351629|ref|ZP_17329260.1| 50S ribosomal protein L4 [Turicella otitidis ATCC 51513]
gi|237510710|gb|ACQ99342.1| ribosomal protein L4 [Turicella otitidis]
gi|394486514|emb|CCI84145.1| 50S ribosomal protein L4 [Turicella otitidis ATCC 51513]
gi|404386349|gb|EJZ81512.1| 50S ribosomal protein L4 [Turicella otitidis ATCC 51513]
Length = 217
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 118/196 (60%), Gaps = 8/196 (4%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++F+ ++ H+VV QLA +QGTHSTKT EV G GKKP+RQKGTGRAR
Sbjct: 17 GQVELPSEIFEREASIELTHQVVVAQLAAARQGTHSTKTRGEVRGGGKKPYRQKGTGRAR 76
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQF GG +HGPKPR ++ + KK++R L ALS RAA ++ V E+L VP
Sbjct: 77 QGSIRAPQFTGGGIVHGPKPRDYSQRTPKKMKRAALHGALSNRAANDRIHVVEEL-VPGT 135
Query: 232 K--TKFIVNYYNQMENTKKVLLCDGGCIHEKL--KLATQNLHYVNVLPSVGLNVYSILQH 287
K TK ++ ++ K VLL E L + + NL V++L LN Y +++
Sbjct: 136 KPSTKAARSFLERLTGRKNVLLV---VQAEDLNARRSANNLPDVHILVPSQLNTYDVIKS 192
Query: 288 DTLVMSRDAVNKIVDR 303
D +V S+ A+ +DR
Sbjct: 193 DDVVFSKAALEAFIDR 208
>gi|224510784|pdb|3FIN|F Chain F, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 50s Subunit.
gi|380764296|pdb|3TVH|F Chain F, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Leu Complex
Length = 208
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/187 (43%), Positives = 117/187 (62%), Gaps = 7/187 (3%)
Query: 122 DVP--IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
D+P I ++ VVRWQLAKR++GT STKT EV+ +G+K W QK TGRARHG + P
Sbjct: 23 DLPAEINPHLLWEVVRWQLAKRRRGTASTKTRGEVAYSGRKIWPQKHTGRARHGDIGAPI 82
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
F GG + GPKPR ++ L KKVR+ GL +A++ RA EGKLL+ E + KTK + +
Sbjct: 83 FVGGGVVFGPKPRDYSYTLPKKVRKKGLAMAVADRAREGKLLLVEAFAGVNGKTKEFLAW 142
Query: 240 YNQ--MENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAV 297
+ ++ ++ VLL G +E ++ A +NL +V L GLNVY I++ + LVM DA
Sbjct: 143 AKEAGLDGSESVLLVTG---NELVRRAARNLPWVVTLAPEGLNVYDIVRTERLVMDLDAW 199
Query: 298 NKIVDRM 304
+R+
Sbjct: 200 EVFQNRI 206
>gi|209156522|pdb|3D5B|F Chain F, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 50s Subunit Of One 70s
Ribosome. The Entire Crystal Structure Contains Two 70s
Ribosomes As Described In Remark 400.
gi|209156576|pdb|3D5D|F Chain F, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 50s Subunit Of The
Second 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes As Described In Remark 400.
gi|218766799|pdb|3F1F|F Chain F, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes As Described In
Remark 400.
gi|218766855|pdb|3F1H|F Chain F, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
50s Subunit Of The Second 70s Ribosome. The Entire
Crystal Structure Contains Two 70s Ribosomes As
Described In Remark 400
Length = 210
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/187 (43%), Positives = 117/187 (62%), Gaps = 7/187 (3%)
Query: 122 DVP--IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
D+P I ++ VVRWQLAKR++GT STKT EV+ +G+K W QK TGRARHG + P
Sbjct: 23 DLPAEINPHLLWEVVRWQLAKRRRGTASTKTRGEVAYSGRKIWPQKHTGRARHGDIGAPI 82
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
F GG + GPKPR ++ L KKVR+ GL +A++ RA EGKLL+ E + KTK + +
Sbjct: 83 FVGGGVVFGPKPRDYSYTLPKKVRKKGLAMAVADRAREGKLLLVEAFAGVNGKTKEFLAW 142
Query: 240 YNQ--MENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAV 297
+ ++ ++ VLL G +E ++ A +NL +V L GLNVY I++ + LVM DA
Sbjct: 143 AKEAGLDGSESVLLVTG---NELVRRAARNLPWVVTLAPEGLNVYDIVRTERLVMDLDAW 199
Query: 298 NKIVDRM 304
+R+
Sbjct: 200 EVFQNRI 206
>gi|406944937|gb|EKD76572.1| 50S ribosomal protein L4 [uncultured bacterium]
Length = 211
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/205 (39%), Positives = 117/205 (57%), Gaps = 3/205 (1%)
Query: 99 LVIPVTNFFNEDK--GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSG 156
+ + V F NE K G VL VF V ++ D++H+VV Q A ++ TKT EV G
Sbjct: 1 MALNVKIFNNEGKVVGEQVLNPKVFGVKVKTDVVHQVVVSQAANVREAIAHTKTKGEVRG 60
Query: 157 TGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKP-RSHAIKLNKKVRRLGLKIALSARA 215
G+KPW+QKGTGRAR G+ R PQ+RGG + GP+ R+ + K+NKK++RL L +ALS +
Sbjct: 61 GGRKPWKQKGTGRARQGSTRNPQWRGGGVVFGPRSNRNFSQKVNKKMKRLALAMALSDKV 120
Query: 216 AEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
A KLLV + + VP+ KTK + N + Q+ L G + A QN
Sbjct: 121 ANEKLLVVDSISVPAGKTKQLQNLFIQLPCKSAARLLALGAYDSNVIRAAQNAAATGYCA 180
Query: 276 SVGLNVYSILQHDTLVMSRDAVNKI 300
+ LNV +L++D LV+ + A+ I
Sbjct: 181 ADSLNVIDVLKYDYLVLDKAAITII 205
>gi|355704354|gb|AES02199.1| mitochondrial ribosomal protein L4 [Mustela putorius furo]
Length = 294
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/244 (35%), Positives = 132/244 (54%), Gaps = 4/244 (1%)
Query: 53 GLSFLASRKFSTTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKG 112
GL+ LA + + P+S A P +L++ L + Q V + + E G
Sbjct: 20 GLNALAE-EAAPQAAKPESVASAGPQAPVLRRCELPVPASRRPVQAWVESLRGYEQERVG 78
Query: 113 FMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARH 172
L +VF R DI+H+V WQ ++ TKT +EV G G+KPW QKG+GR+R
Sbjct: 79 LAELHPEVFSTAPRLDILHQVAIWQRNFKRISYAKTKTRAEVRGGGRKPWPQKGSGRSRQ 138
Query: 173 GTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R P +RGG HGP+ P S+ L KVR GLK+AL+ + A+ L V + LE+P+
Sbjct: 139 GSIRSPIWRGGGIAHGPRGPTSYYYMLPMKVRVQGLKVALTVKLAQDDLHVVDSLELPTS 198
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGC--IHEKLKLATQNLHYVNVLPSVGLNVYSILQHDT 289
+++ VLL D + + + AT +L N++P+VGLNVYS+L+H T
Sbjct: 199 DPQYLTELARYRRWGDSVLLVDLAYEDMPQNVVAATSSLKTFNLIPAVGLNVYSMLKHQT 258
Query: 290 LVMS 293
LV++
Sbjct: 259 LVLT 262
>gi|212704584|ref|ZP_03312712.1| hypothetical protein DESPIG_02646 [Desulfovibrio piger ATCC 29098]
gi|212671983|gb|EEB32466.1| 50S ribosomal protein L4 [Desulfovibrio piger ATCC 29098]
Length = 207
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 119/205 (58%), Gaps = 2/205 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + ++ G + L+ DVF+V R +I++ VVR Q+A ++ GTH KT + VSG G K
Sbjct: 4 VKVYDQNKQECGELTLSADVFEVEARPEILNLVVRAQMAAKRAGTHMAKTRAFVSGGGVK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G+ R P +RGG + GP+PR ++ K+N KVR L +K+ALS+R A L
Sbjct: 64 PWKQKGTGRARSGSNRSPVWRGGAIVFGPQPRDYSFKVNSKVRALAMKMALSSRLAAENL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
LV + +E+P KTK + K +++ E L + +N+ + + L+
Sbjct: 124 LVVKGIELPEAKTKHFAKVAGTLGLNKALIVTAEES--EALTRSARNIPGITLTTPDRLS 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRMH 305
V IL+H LV+ AV + R
Sbjct: 182 VLEILRHKQLVLLEGAVAPVQARFE 206
>gi|118579120|ref|YP_900370.1| 50S ribosomal protein L4 [Pelobacter propionicus DSM 2379]
gi|166199839|sp|A1ALU2.1|RL4_PELPD RecName: Full=50S ribosomal protein L4
gi|118501830|gb|ABK98312.1| LSU ribosomal protein L4P [Pelobacter propionicus DSM 2379]
Length = 207
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 120/200 (60%), Gaps = 2/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I V N + G + LA DVF+ +++ ++H +R QLA R+ GT TKT SEV+G+GKK
Sbjct: 4 IAVYNMNRQQVGELQLADDVFNADVKEHLMHLALRIQLANRRAGTVKTKTRSEVAGSGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P++QKGTG AR G +R PQ+ GG GP+P+ + + +NKK R+ + ALS + ++
Sbjct: 64 PFKQKGTGNARQGCVRAPQYPGGGVAFGPQPKEYHLSMNKKARKSAICSALSLQCKNNRI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
V + L+ S TK V++ + E + +++ D L+L+ +N+ +V +L LN
Sbjct: 124 TVMDKLDFSSISTKAFVDFMKRFEIERSLIITDD--FSNNLQLSCRNVPHVKLLKHDALN 181
Query: 281 VYSILQHDTLVMSRDAVNKI 300
++ IL++ ++ ++ AV +
Sbjct: 182 IHDILKYKNIIFTQGAVQSV 201
>gi|444525512|gb|ELV14059.1| 39S ribosomal protein L4, mitochondrial [Tupaia chinensis]
Length = 294
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 120/213 (56%), Gaps = 7/213 (3%)
Query: 97 QDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSG 156
Q V + + E G L DVF R DI+H+V WQ ++ TKT +EV G
Sbjct: 63 QAWVESLRGYEQERVGLAELHPDVFATAPRLDILHQVAIWQKNFKRISYAKTKTRAEVRG 122
Query: 157 TGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARA 215
G+KPW QKG GRARHG++R P +RGG HGP+ P S+ L KVR LGLK+ALS +
Sbjct: 123 GGRKPWPQKGGGRARHGSIRSPIWRGGGIAHGPRGPTSYYYMLPMKVRALGLKVALSVKL 182
Query: 216 AEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKL----ATQNLHYV 271
A+ L + + LE+P+ +++ + VLL D HE + AT L +
Sbjct: 183 AQDNLHIVDSLELPTPDPQYLSELAHFRRWGDSVLLVD--LTHEDMPQNIVEATARLKTI 240
Query: 272 NVLPSVGLNVYSILQHDTLVMSRDAVNKIVDRM 304
N++P+VGLN +S+L+H TLV++ V + +++
Sbjct: 241 NLIPAVGLNAHSMLKHQTLVLTLPTVAFLEEKL 273
>gi|374308550|ref|YP_005054981.1| 50S ribosomal protein L4/L1 [Filifactor alocis ATCC 35896]
gi|291166878|gb|EFE28924.1| 50S ribosomal protein L4/L1 [Filifactor alocis ATCC 35896]
Length = 207
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 119/199 (59%), Gaps = 1/199 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N E M L+ ++F I + ++++VV+ LA ++ GT S KT +EV G G K
Sbjct: 4 VDVLNINGEKVSEMELSENLFGAEINEHVVYQVVKNHLANKRVGTQSAKTRAEVRGGGAK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ++GG + PKPR ++ + KK+RRL LK L+ + EG L
Sbjct: 64 PWRQKGTGRARQGSIRSPQWKGGGVVFAPKPRDYSYTVPKKIRRLALKSVLTDKVNEGNL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V +D+ + KT+ + ++ KK L+ E ++ + +N+ V + +N
Sbjct: 124 VVVDDINLTEWKTREFAKMLSALKVGKKALVVTKDNSPEVVR-SGRNIKNVKIAFVGTMN 182
Query: 281 VYSILQHDTLVMSRDAVNK 299
VY IL +TLV+++DAV K
Sbjct: 183 VYDILNANTLVLTKDAVAK 201
>gi|188584837|ref|YP_001916382.1| 50S ribosomal protein L4 [Natranaerobius thermophilus JW/NM-WN-LF]
gi|226730697|sp|B2A4E0.1|RL4_NATTJ RecName: Full=50S ribosomal protein L4
gi|179349524|gb|ACB83794.1| LSU ribosomal protein L4P [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 207
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 118/203 (58%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N + G + L +F I + ++H V LA +++GT S KT SEV G
Sbjct: 1 MPKVALYNNEGSQVGEITLDDSIFATDINETLMHEAVNMHLASKRRGTASAKTRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRARHG++R P + GG PKPR ++ K+ KK +R +K AL+ +
Sbjct: 61 GRKPWRQKGTGRARHGSIRSPIWVGGGISFAPKPRDYSYKMPKKAKRKAIKSALTTKLNN 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
G++++ E+L + + KTK I+ + K ++ G + +T+N+ V+ +
Sbjct: 121 GEIVILEELTMEAPKTKKIIEMLENLSINHKAMIVTGAS-DLNVYRSTRNIPGVSSALAN 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
LNVY +L HD LV+++DAV+ I
Sbjct: 180 NLNVYDVLNHDYLVLTKDAVSVI 202
>gi|262066303|ref|ZP_06025915.1| ribosomal protein L4/L1 family protein [Fusobacterium periodonticum
ATCC 33693]
gi|294783641|ref|ZP_06748965.1| ribosomal protein L4 [Fusobacterium sp. 1_1_41FAA]
gi|291379998|gb|EFE87516.1| ribosomal protein L4/L1 family protein [Fusobacterium periodonticum
ATCC 33693]
gi|294480519|gb|EFG28296.1| ribosomal protein L4 [Fusobacterium sp. 1_1_41FAA]
Length = 209
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/199 (38%), Positives = 120/199 (60%), Gaps = 1/199 (0%)
Query: 100 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
V+ V N + G + + VF + K ++H V+ +LA +QGT STKT + V G G+
Sbjct: 3 VLNVYNLAGDQTGTLEVNDAVFGIEPNKVVLHEVLTAELAAARQGTASTKTRAMVRGGGR 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
KP++QKGTGRAR G++R P GG GP PRS+ K+NKKVR L L+ ALSA+ A G
Sbjct: 63 KPFKQKGTGRARQGSIRAPHMVGGGVTFGPHPRSYEKKVNKKVRNLALRSALSAKVAAGN 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHE-KLKLATQNLHYVNVLPSVG 278
+LV + + + KTK IVN N+++ +K L G I + L L+ +NL +L
Sbjct: 123 VLVLDYEGIDTPKTKVIVNLVNKVDAKQKQLFVVGDLIKDYNLYLSARNLENAVILQPNE 182
Query: 279 LNVYSILQHDTLVMSRDAV 297
+ VY +L+ + ++++++A+
Sbjct: 183 IGVYWLLKQEKVILTKEAL 201
>gi|323490624|ref|ZP_08095829.1| 50S ribosomal protein L4 [Planococcus donghaensis MPA1U2]
gi|323395716|gb|EGA88557.1| 50S ribosomal protein L4 [Planococcus donghaensis MPA1U2]
gi|456013273|gb|EMF46932.1| LSU ribosomal protein L4p (L1e) [Planococcus halocryophilus Or1]
Length = 207
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 109/189 (57%), Gaps = 1/189 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L VF + + ++ V Q A +QG H K SEV+G GKKPWRQKGTGRAR
Sbjct: 15 GEIELNDHVFGIQPNESVLFDAVVSQRASLRQGNHKVKNRSEVAGGGKKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+RGG + GP PRS++ KL KKVRRL L+ ALS+ L+V E L +
Sbjct: 75 QGSIRSPQWRGGGIVFGPTPRSYSYKLPKKVRRLALRSALSSAVVGENLMVLEGLTFDAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KTK + KK L + E + + +NL + V+ + G+NV +L HD +V
Sbjct: 135 KTKSFNQLIADLSIGKKALFVTAD-LDENVAKSARNLKGMTVVAADGINVLDLLGHDKIV 193
Query: 292 MSRDAVNKI 300
M++ AV KI
Sbjct: 194 MTKAAVEKI 202
>gi|357054995|ref|ZP_09116073.1| 50S ribosomal protein L4 [Clostridium clostridioforme 2_1_49FAA]
gi|355383695|gb|EHG30772.1| 50S ribosomal protein L4 [Clostridium clostridioforme 2_1_49FAA]
Length = 206
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 119/201 (59%), Gaps = 4/201 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G + L VF V + + ++H V QLA ++QGT KT SEVSG G+K
Sbjct: 4 VSVYNMEGKEVGTLELNDAVFGVEVNEHLVHLAVVAQLANKRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ++GG + P PR + I+LNKK +R L+ AL++R + K
Sbjct: 64 PWRQKGTGHARQGSTRSPQWKGGGIVFAPTPRDYTIRLNKKEKRAALRSALTSRVQDNKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKK-VLLCDGGCIHEKLKLATQNLHYVNVLPSVGL 279
+V ++L+ KT+ N + ++ +K V+L D + L+ +N+ V +
Sbjct: 124 IVVDELKFDEIKTRKFQNVMDNLKVSKALVVLADN---DQNTVLSARNIADVKTSQVGSI 180
Query: 280 NVYSILQHDTLVMSRDAVNKI 300
NVY IL+++T+V ++ AV I
Sbjct: 181 NVYDILKYNTVVATKAAVASI 201
>gi|254303419|ref|ZP_04970777.1| ribosomal protein L4 [Fusobacterium nucleatum subsp. polymorphum
ATCC 10953]
gi|148323611|gb|EDK88861.1| ribosomal protein L4 [Fusobacterium nucleatum subsp. polymorphum
ATCC 10953]
Length = 209
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/199 (38%), Positives = 120/199 (60%), Gaps = 1/199 (0%)
Query: 100 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
V+ V N + G + + VF + K ++H V+ +LA +QGT STKT + V G G+
Sbjct: 3 VLNVYNLAGDQTGTLEVNDAVFGIEPNKVVLHEVLTAELAAARQGTASTKTRAMVRGGGR 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
KP++QKGTGRAR G++R P GG GP PRS+ K+NKKVR L L+ ALSA+ A G
Sbjct: 63 KPFKQKGTGRARQGSIRAPHMVGGGVTFGPHPRSYEKKVNKKVRNLALRSALSAKVAAGN 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHE-KLKLATQNLHYVNVLPSVG 278
+LV + + + KTK IVN N+++ +K L G I + L L+ +NL +L
Sbjct: 123 VLVLDYDVIETPKTKVIVNLVNKVDAKQKQLFVVGDLIKDYNLYLSARNLENAVILQPNE 182
Query: 279 LNVYSILQHDTLVMSRDAV 297
+ VY +L+ + ++++++A+
Sbjct: 183 IGVYWLLKQEKVILTKEAL 201
>gi|73986986|ref|XP_854013.1| PREDICTED: 39S ribosomal protein L4, mitochondrial [Canis lupus
familiaris]
Length = 294
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 125/228 (54%), Gaps = 3/228 (1%)
Query: 69 PDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKD 128
P++ A P + +L++ L Q V + + E G L +VF R D
Sbjct: 35 PEAVGSAGPQEPVLRRCELPVPAPRRPVQAWVESLRGYEQERVGLAELHPEVFSTAPRLD 94
Query: 129 IIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHG 188
I+H+V WQ ++ TKT +EV G G+KPW QKG+GR+RHG++R P +RGG HG
Sbjct: 95 ILHQVAIWQRNFKRISYAKTKTRAEVQGGGRKPWPQKGSGRSRHGSIRSPIWRGGGIAHG 154
Query: 189 PK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQMENTK 247
P+ P S+ L KVR GLK+AL+ + A+ L + + LE+P+ +++
Sbjct: 155 PRGPTSYYYMLPMKVRVQGLKVALTVKLAQDDLHIVDSLELPTSDPQYLTELARYRHWGD 214
Query: 248 KVLLCDGGC--IHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMS 293
VLL D + + + AT L N++P+VGLNVYS+L+H TLV++
Sbjct: 215 SVLLVDLAYENMPQNIVAATTGLKTFNLIPAVGLNVYSMLKHQTLVLT 262
>gi|237742671|ref|ZP_04573152.1| LSU ribosomal protein L1E [Fusobacterium sp. 4_1_13]
gi|256846066|ref|ZP_05551524.1| ribosomal protein L4/L1 [Fusobacterium sp. 3_1_36A2]
gi|229430319|gb|EEO40531.1| LSU ribosomal protein L1E [Fusobacterium sp. 4_1_13]
gi|256719625|gb|EEU33180.1| ribosomal protein L4/L1 [Fusobacterium sp. 3_1_36A2]
Length = 209
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/199 (38%), Positives = 120/199 (60%), Gaps = 1/199 (0%)
Query: 100 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
V+ V N + G + + VF + K ++H V+ +LA +QGT STKT + V G G+
Sbjct: 3 VLNVYNLAGDQTGTLEVNDAVFGIEPNKVVLHEVLTAELAAARQGTASTKTRAMVRGGGR 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
KP++QKGTGRAR G++R P GG GP PRS+ K+NKKVR L L+ ALSA+ A G
Sbjct: 63 KPFKQKGTGRARQGSIRAPHMVGGGVTFGPHPRSYEKKVNKKVRNLALRSALSAKVAAGN 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHE-KLKLATQNLHYVNVLPSVG 278
+LV + + + KTK IVN N+++ +K L G I + L L+ +NL +L
Sbjct: 123 VLVLDYDGIETPKTKVIVNLVNKVDAKQKQLFVVGDLIKDYNLYLSARNLENAVILQPNE 182
Query: 279 LNVYSILQHDTLVMSRDAV 297
+ VY +L+ + ++++++A+
Sbjct: 183 IGVYWLLKQEKVILTKEAL 201
>gi|158297277|ref|XP_317543.4| AGAP007937-PA [Anopheles gambiae str. PEST]
gi|157015117|gb|EAA12669.4| AGAP007937-PA [Anopheles gambiae str. PEST]
Length = 224
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 117/201 (58%), Gaps = 2/201 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L VF R DI+H+ + WQ R TKT +EV G G+KPW QKG GRAR
Sbjct: 10 GIVELDNAVFGASPRIDIVHQNIEWQRKYRFVSFAHTKTRNEVRGGGRKPWPQKGLGRAR 69
Query: 172 HGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPS 230
HG++R P +RGG HGP+ P +H L R LGL LS + A+ L V ++LE+P+
Sbjct: 70 HGSIRSPLWRGGGIAHGPRSPTTHFYMLPFFNRVLGLVSTLSIKLAQDDLHVVKNLEIPT 129
Query: 231 HKTKFIVNYYNQMENTKKVLLCDG-GCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDT 289
+++ + + VL D + + ++ +N+ ++N++P+ GLNVYS+L+H+T
Sbjct: 130 DDPQYLQDLVAARQWGPSVLFVDATDVLSRNISISAENIDHINLMPTYGLNVYSMLKHNT 189
Query: 290 LVMSRDAVNKIVDRMHTPINR 310
+V++ DAV + ++ +NR
Sbjct: 190 VVLTEDAVRSVESKLLEHLNR 210
>gi|422338830|ref|ZP_16419790.1| ribosomal protein L4/L1 family protein [Fusobacterium nucleatum
subsp. polymorphum F0401]
gi|355371957|gb|EHG19300.1| ribosomal protein L4/L1 family protein [Fusobacterium nucleatum
subsp. polymorphum F0401]
Length = 209
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/199 (38%), Positives = 120/199 (60%), Gaps = 1/199 (0%)
Query: 100 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
V+ V N + G + + VF + K ++H V+ +LA +QGT STKT + V G G+
Sbjct: 3 VLNVYNLAGDQTGTLEVNDAVFGIEPNKVVLHEVLTAELAAARQGTASTKTRAMVRGGGR 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
KP++QKGTGRAR G++R P GG GP PRS+ K+NKKVR L L+ ALSA+ A G
Sbjct: 63 KPFKQKGTGRARQGSIRAPHMVGGGVTFGPHPRSYEKKVNKKVRNLALRSALSAKVAAGN 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHE-KLKLATQNLHYVNVLPSVG 278
+LV + + + KTK IVN N+++ +K L G I + L L+ +NL +L
Sbjct: 123 VLVLDYDGIETPKTKVIVNLVNKVDAKQKQLFVVGDLIKDYNLYLSARNLENAVILQPNE 182
Query: 279 LNVYSILQHDTLVMSRDAV 297
+ VY +L+ + ++++++A+
Sbjct: 183 IGVYWLLKQEKVILTKEAL 201
>gi|333918148|ref|YP_004491729.1| 50S ribosomal protein L4 [Amycolicicoccus subflavus DQS3-9A1]
gi|333480369|gb|AEF38929.1| 50S ribosomal protein L4 [Amycolicicoccus subflavus DQS3-9A1]
Length = 232
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/195 (42%), Positives = 117/195 (60%), Gaps = 10/195 (5%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++FD P+ ++H+VV QLA +QGTHSTKT +EVSG GKKP+RQKGTGRAR
Sbjct: 26 GTVDLPAEIFDAPVNVALMHQVVVAQLAAARQGTHSTKTRAEVSGGGKKPYRQKGTGRAR 85
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL---EV 228
G+ R PQF GG T+HGPKPR ++ + KK+ L+ ALS RA ++ V ++ +
Sbjct: 86 QGSTRAPQFVGGGTVHGPKPRDYSQRTPKKMIAGALRSALSDRARSERIHVITEVVAGQE 145
Query: 229 PSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLK--LATQNLHYVNVLPSVGLNVYSILQ 286
PS TK ++ Q+ + K LL G E L L+ NL V+ + LN Y +L
Sbjct: 146 PS--TKAAKTFFAQISDRNKFLLVVG---REDLAAWLSVSNLDNVHPIAPDQLNTYDVLD 200
Query: 287 HDTLVMSRDAVNKIV 301
D LV + +A++ +
Sbjct: 201 SDDLVFTVEALDSFI 215
>gi|238922831|ref|YP_002936344.1| ribosomal protein L4/L1e [Eubacterium rectale ATCC 33656]
gi|259491558|sp|C4ZBD5.1|RL4_EUBR3 RecName: Full=50S ribosomal protein L4
gi|238874503|gb|ACR74210.1| ribosomal protein L4/L1e [Eubacterium rectale ATCC 33656]
gi|291523733|emb|CBK89320.1| LSU ribosomal protein L4P [Eubacterium rectale DSM 17629]
gi|291528801|emb|CBK94387.1| LSU ribosomal protein L4P [Eubacterium rectale M104/1]
Length = 206
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 117/200 (58%), Gaps = 2/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ + L +F V I + ++H V QLA ++QGT KT SEV G G+K
Sbjct: 4 VAVYNMEGKEVDKIELNDSIFGVEINEHLVHMAVLQQLANKRQGTQKAKTRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ GG + P PR ++ KLNKK +R LK AL++R E K
Sbjct: 64 PWRQKGTGHARQGSTRSPQWTGGGVVFAPTPRDYSFKLNKKEKRAALKSALTSRVVENKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V ++L++ KTK V + K +++ + + EK+ + N+ V + LN
Sbjct: 124 VVVDELKLDEIKTKKFVEVLKNLNVEKALVVLND--MDEKVIASAANIPTVKTTQTNELN 181
Query: 281 VYSILQHDTLVMSRDAVNKI 300
V+ +L++DT+V+++ AV I
Sbjct: 182 VFDVLKYDTVVVTKAAVATI 201
>gi|266620262|ref|ZP_06113197.1| ribosomal protein L4/L1 family protein [Clostridium hathewayi DSM
13479]
gi|288868165|gb|EFD00464.1| ribosomal protein L4/L1 family protein [Clostridium hathewayi DSM
13479]
Length = 206
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 116/200 (58%), Gaps = 2/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N + G + L VF V + + ++H V QLA ++QGT KT +EVSG G+K
Sbjct: 4 VSVYNMEGNEVGTLELNDAVFGVNVNEHLVHLAVVSQLANKRQGTQKAKTRAEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTG AR G+ R PQ+ GG + P PR + IKLNKK R+L LK AL++R E K
Sbjct: 64 PWKQKGTGHARQGSTRSPQWTGGGVVFAPTPRDYTIKLNKKERKLALKSALTSRVNENKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V ++L+ KTK N N ++ K L+ G +K A +N+ V +N
Sbjct: 124 IVVDELKFDEIKTKKFQNVLNNLK-VSKALVVVGDDSTNAVKSA-RNIPAVKTAFVNTIN 181
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY IL+++T+V ++ AV I
Sbjct: 182 VYDILKYNTVVATKTAVAAI 201
>gi|424779809|ref|ZP_18206701.1| LSU ribosomal protein L4p [Catellicoccus marimammalium M35/04/3]
gi|422843559|gb|EKU27989.1| LSU ribosomal protein L4p [Catellicoccus marimammalium M35/04/3]
Length = 207
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 120/203 (59%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P F +D G + L +F + ++ ++ + Q A +QGTH+ + S VSG
Sbjct: 1 MPTVALFKQDGTQNGEVTLNDAIFGIEPNENAVYDAIIMQRASLRQGTHAVRNRSAVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ KL KKVRRL +K LS + AE
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAIKSVLSEKVAE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
K+++ + L + KTK ++ T K LL +E L+ +NL V+V+ +
Sbjct: 121 NKMVIVDALNFETPKTKEFKQVLANLDVTTKTLLVVENE-NETAMLSARNLPNVSVVFAD 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
++V ++ D ++M++ A+NK+
Sbjct: 180 NVSVLDVVSADKMLMTQAALNKV 202
>gi|335356557|ref|ZP_08548427.1| 50S ribosomal protein L4 [Lactobacillus animalis KCTC 3501]
Length = 207
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/205 (40%), Positives = 121/205 (59%), Gaps = 8/205 (3%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN+D G + L VF + + ++ V Q A +QGTH+ K S V G
Sbjct: 1 MPTVALFNQDGTQNGDVQLNDAVFGIEPNESVVFDAVIMQRASLRQGTHAVKNRSAVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+ GG T+ GP PRS+A KL +KVRRL ++ LS + +
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWVGGGTVFGPTPRSYAYKLPRKVRRLAIRSVLSQKVLD 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVL--LCDGGCIHEKLKLATQNLHYVNVLP 275
L+V E L + KTK N ++ KVL L D +EK LA +NL V V+P
Sbjct: 121 NSLVVVETLNFDAPKTKAFAEVLNNLDVKSKVLVVLEDD---NEKAALAARNLANVTVIP 177
Query: 276 SVGLNVYSILQHDTLVMSRDAVNKI 300
+ GLNV ++ D +V+++ A++++
Sbjct: 178 AKGLNVLDVVNSDKMVITKGALSQV 202
>gi|379796571|ref|YP_005326572.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
MSHR1132]
gi|356873564|emb|CCE59903.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
MSHR1132]
Length = 207
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 109/189 (57%), Gaps = 1/189 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ VF + ++ + Q A +QGTH+ K S VSG G+KPW+QKGTGRAR
Sbjct: 15 GSIELSDAVFGIEPNNSVLFEAIHLQRASLRQGTHAVKNRSAVSGGGRKPWKQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
GT+R PQ+RGG + GP PRS+A K+ KK+RRL L+ ALS + E L V + +
Sbjct: 75 QGTIRAPQWRGGGIVFGPTPRSYAYKMPKKMRRLALRSALSFKVQENGLTVVDAFNFEAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KTK N +E KKVL+ ++L+ +N+ V V + GLNV I D+LV
Sbjct: 135 KTKEFKNVLTTLEQPKKVLVVTENE-DVNVELSARNIPGVQVTTAQGLNVLDITNADSLV 193
Query: 292 MSRDAVNKI 300
++ A K+
Sbjct: 194 ITEAAAKKV 202
>gi|283796558|ref|ZP_06345711.1| ribosomal protein L4/L1 family protein [Clostridium sp. M62/1]
gi|291075972|gb|EFE13336.1| 50S ribosomal protein L4 [Clostridium sp. M62/1]
gi|295092548|emb|CBK78655.1| LSU ribosomal protein L4P [Clostridium cf. saccharolyticum K10]
Length = 204
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 113/201 (56%), Gaps = 6/201 (2%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N + G + L VF V + + ++H V QLA ++QGT KT SEVSG G+K
Sbjct: 4 VSVYNIEGNEVGTLELNDAVFGVEVNEHLVHLAVVAQLANKRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ GG + P PR + I+LNKK +RL LK AL++R E K
Sbjct: 64 PWRQKGTGHARQGSTRAPQWTGGGVVFAPTPRDYTIRLNKKEKRLALKSALTSRVNENKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLL-CDGGCIHEKLKLATQNLHYVNVLPSVGL 279
+V ++L KTK ++ K +++ D L+ +N+ V +
Sbjct: 124 IVVDELSFAEIKTKKFAEVLKNLKVEKALVVGADANA-----ALSARNIPAVKTASVNTI 178
Query: 280 NVYSILQHDTLVMSRDAVNKI 300
NVY IL+++T+V ++ AV I
Sbjct: 179 NVYDILKYNTVVATKAAVASI 199
>gi|117924156|ref|YP_864773.1| 50S ribosomal protein L4P [Magnetococcus marinus MC-1]
gi|166234681|sp|A0L5X4.1|RL4_MAGSM RecName: Full=50S ribosomal protein L4
gi|117607912|gb|ABK43367.1| LSU ribosomal protein L4P [Magnetococcus marinus MC-1]
Length = 207
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 124/204 (60%), Gaps = 1/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+PV + N++ L VF IR D++ V +QLAKR+ GT + S+V G GKK
Sbjct: 4 VPVKDANNQEVRSTELNESVFGREIRADLLGMAVNYQLAKRRLGTATVLGRSDVRGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQKGTG AR GT+R PQFR G + GP+ R ++ KLNKKVR+L L+ ALS +A+ ++
Sbjct: 64 PYRQKGTGNARQGTIRAPQFRTGGIVFGPQQRDYSHKLNKKVRKLALQTALSVKASSEEM 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + LE+ S KTK + + + + L +E + L+ +N+ V V G+N
Sbjct: 124 VVVDKLELASIKTKEMKALLSTLGAARSTFLVVKELSNE-IVLSARNIPNVMVADVDGVN 182
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY +L+++ LV++ +AV + +++
Sbjct: 183 VYDLLRYEKLVITEEAVRSLEEKL 206
>gi|429768305|ref|ZP_19300469.1| 50S ribosomal protein L4 [Brevundimonas diminuta 470-4]
gi|429189307|gb|EKY30146.1| 50S ribosomal protein L4 [Brevundimonas diminuta 470-4]
Length = 212
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/205 (40%), Positives = 122/205 (59%), Gaps = 2/205 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
+ V + G + L+ VF + IR D++ R V WQLAKR+ GTH +T +E S TGK
Sbjct: 3 LSVIKLDGKAAGDVELSDAVFGISDIRGDLLARYVNWQLAKRRAGTHKVQTRNENSRTGK 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
K ++QKGTG ARHG+ R PQF GG+ GP R H L KKVR L L+ ALS++ G
Sbjct: 63 KMYKQKGTGGARHGSRRAPQFVGGSPAFGPVVRDHGFSLPKKVRALALRHALSSKVKAGD 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGL 279
L+V + + V KT + + ++ TK +++ G + LA +N+ +++VLP+ GL
Sbjct: 123 LVVVDSVSVKEAKTAALRETFGKLGWTKALIIA-GPEVDANFGLAARNIPHIDVLPNAGL 181
Query: 280 NVYSILQHDTLVMSRDAVNKIVDRM 304
NVY IL+ D LV+++ AV I R
Sbjct: 182 NVYDILRADKLVLTKAAVEAIEARF 206
>gi|389866517|ref|YP_006368758.1| 50S ribosomal protein L4 [Modestobacter marinus]
gi|388488721|emb|CCH90299.1| 50S ribosomal protein L4 [Modestobacter marinus]
Length = 266
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/208 (40%), Positives = 123/208 (59%), Gaps = 8/208 (3%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
D +PV N E G + L G++FD ++H+VV QLA +QGTHSTKT ++VSGT
Sbjct: 15 DREVPVRNAAGESTGSVTLPGELFDANANVSLMHQVVVAQLAAARQGTHSTKTRAQVSGT 74
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G KP+RQKGTGRAR G+LR PQF GG HGP PR++ K KK++ L+ ALS RA E
Sbjct: 75 GAKPYRQKGTGRARQGSLRAPQFSGGGVSHGPVPRNYDQKTPKKMKAAALRGALSDRARE 134
Query: 218 GKLLV---FEDLEVPSHKTKFIVNYYNQMENTKKVLLC-DGGCIHEKLKLATQNLHYVNV 273
++ V F + + PS TK + + + K+VL+ D + + L +N+ V++
Sbjct: 135 DRVHVVSAFVEGDAPS--TKAAIKVLDAVTAAKRVLVVLDRDDVLNWVSL--RNVPRVHL 190
Query: 274 LPSVGLNVYSILQHDTLVMSRDAVNKIV 301
+ + LN Y +L D +V + A+ + V
Sbjct: 191 IEAGQLNTYDVLVADEVVFTETALAEYV 218
>gi|451943234|ref|YP_007463870.1| 50S ribosomal protein L4 [Corynebacterium halotolerans YIM 70093 =
DSM 44683]
gi|451902621|gb|AGF71508.1| 50S ribosomal protein L4 [Corynebacterium halotolerans YIM 70093 =
DSM 44683]
Length = 217
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/198 (41%), Positives = 120/198 (60%), Gaps = 10/198 (5%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++FD + ++H+VV QLA +QGTHSTKT SEVSG GKKP+RQKGTGRAR
Sbjct: 17 GQVDLPAEIFDREVSIALMHQVVNAQLAAARQGTHSTKTRSEVSGGGKKPFRQKGTGRAR 76
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL---EV 228
G++R P F GG HGPKPR +A + KK++ L ALS RA G++ V +L +
Sbjct: 77 QGSIRAPHFAGGGISHGPKPRDYAQRTPKKMKSAALCGALSDRARNGRIHVITELVPGQD 136
Query: 229 PSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKL--KLATQNLHYVNVLPSVGLNVYSILQ 286
PS K+ + + ++ K VLL G E L + + NL V++L + LN Y +L
Sbjct: 137 PSTKSARV--FLERLTERKSVLLVVG---REDLNARRSANNLPGVHILEASQLNTYDVLN 191
Query: 287 HDTLVMSRDAVNKIVDRM 304
D +V S +A++ ++R+
Sbjct: 192 SDDVVFSVEALHTFINRV 209
>gi|443489527|ref|YP_007367674.1| 50S ribosomal protein L4, RplD [Mycobacterium liflandii 128FXT]
gi|442582024|gb|AGC61167.1| 50S ribosomal protein L4, RplD [Mycobacterium liflandii 128FXT]
Length = 224
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/209 (40%), Positives = 123/209 (58%), Gaps = 6/209 (2%)
Query: 96 HQDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVS 155
+DL I V + G +VL ++FDVP ++H+VV Q A +QGTHSTKT +VS
Sbjct: 9 QKDLEIQVKAPDGKVDGSVVLPAELFDVPANIALMHQVVTAQRAAARQGTHSTKTRGDVS 68
Query: 156 GTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARA 215
G G+KP+RQKGTGRAR G+ R PQF GG +HGPKPR ++ + KK+ L+ ALS RA
Sbjct: 69 GGGRKPYRQKGTGRARQGSTRAPQFTGGGVVHGPKPRDYSQRTPKKMIAAALRGALSDRA 128
Query: 216 AEGKLLVFEDL---EVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVN 272
G++ +L + PS TK + + + K+VL+ G +K + +NL V+
Sbjct: 129 RNGRIHAVTELVAGQTPS--TKSAKTFLATITDRKQVLVVIGRDDQTGVK-SVRNLPGVH 185
Query: 273 VLPSVGLNVYSILQHDTLVMSRDAVNKIV 301
+L LN Y +L+ D +V S +A+N +
Sbjct: 186 ILSPDQLNTYDVLRADDVVFSVEALNAYI 214
>gi|376259803|ref|YP_005146523.1| 50S ribosomal protein L4 [Clostridium sp. BNL1100]
gi|373943797|gb|AEY64718.1| 50S ribosomal protein L4, bacterial/organelle [Clostridium sp.
BNL1100]
Length = 207
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/204 (36%), Positives = 126/204 (61%), Gaps = 6/204 (2%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + +N E G + L +VF + +++H VV QLA ++QGT STKT SEV G
Sbjct: 1 MPKVDLYNMKGEVVGDIQLCDNVFGAEVNNEVLHAVVVNQLANKRQGTQSTKTKSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
GKKPWRQKGTGRAR G++R Q+ G + GPKPRS+ + KKV+R+ +K AL+++ +
Sbjct: 61 GKKPWRQKGTGRARQGSIRSAQWIKGGIVLGPKPRSYRYTMPKKVKRIAMKSALTSKVSG 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQME-NTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
++ V + L + + KTK +V N ++ ++ +++ D +E + + +N+ +
Sbjct: 121 NEIFVLDALTLEAIKTKSMVGVLNNLKVDSSALIVIDSK--NENIVKSARNIPGIKTAYV 178
Query: 277 VGLNVYSILQHDTLVMSRDAVNKI 300
LNV+ IL++D ++++DAV K+
Sbjct: 179 NTLNVFDILKYDKFIITKDAVEKV 202
>gi|418009015|ref|ZP_12648859.1| LSU ribosomal protein L4p (L1e) [Lactobacillus casei UW4]
gi|410544928|gb|EKQ19238.1| LSU ribosomal protein L4p (L1e) [Lactobacillus casei UW4]
Length = 207
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/192 (39%), Positives = 117/192 (60%), Gaps = 3/192 (1%)
Query: 110 DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGR 169
+ G + L ++ V ++++ V Q A +QGTH+ K S VSG G+KPWRQKGTGR
Sbjct: 13 ENGKVELNDAIWAVEPNENVVFDAVVMQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTGR 72
Query: 170 ARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVP 229
AR G++R PQ+RGG + GP PRS+A KL KKVRRL +K LS + + L+V + L
Sbjct: 73 ARQGSIRSPQWRGGGIVFGPTPRSYAYKLPKKVRRLAIKSVLSQKVLDSDLVVVDGLNFD 132
Query: 230 SHKTKFIVNYYNQMENTKKVLLC-DGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHD 288
+ KTK + ++ + K L+ +GG +E A +NL V V+P+ G+NV ++ +
Sbjct: 133 APKTKAFATVLDGLKVSDKALVVLEGG--NEVAAKAARNLPNVKVVPAEGINVLDVVDYK 190
Query: 289 TLVMSRDAVNKI 300
L++++ A+ KI
Sbjct: 191 KLILTQSALQKI 202
>gi|383761364|ref|YP_005440346.1| 50S ribosomal protein L4 [Caldilinea aerophila DSM 14535 = NBRC
104270]
gi|381381632|dbj|BAL98448.1| 50S ribosomal protein L4 [Caldilinea aerophila DSM 14535 = NBRC
104270]
Length = 211
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 120/193 (62%), Gaps = 8/193 (4%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ VF PI ++H+ + QLA + GTH TKT SEVSG G+KPWRQKGTGRAR
Sbjct: 7 GEVELSDAVFAAPIHTAVMHQALMRQLANARLGTHDTKTRSEVSGGGRKPWRQKGTGRAR 66
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+ GG + GP PR + L KK++R+ L+ ALS +AAEG+++V + + +
Sbjct: 67 QGSIRAPQWVGGGIVFGPTPRKYTKALPKKMQRMALRSALSVKAAEGQIVVIDRVAIDEP 126
Query: 232 KTKFIVNYYNQME-NTKKVLLCDGGCIHEK---LKLATQNLHYVNVLPSVGLNVYSILQH 287
KTK + + +KVLL ++EK + + +NL V L + LN+ +L +
Sbjct: 127 KTKIAAQMLSALGIADQKVLL----VMNEKSVPVWKSVRNLPQVKSLLTGYLNIRDLLGY 182
Query: 288 DTLVMSRDAVNKI 300
D L+++RDAV+ I
Sbjct: 183 DVLLLTRDAVDFI 195
>gi|261409520|ref|YP_003245761.1| 50S ribosomal protein L4/L1e [Paenibacillus sp. Y412MC10]
gi|329922057|ref|ZP_08277850.1| 50S ribosomal protein L4 [Paenibacillus sp. HGF5]
gi|261285983|gb|ACX67954.1| ribosomal protein L4/L1e [Paenibacillus sp. Y412MC10]
gi|328942440|gb|EGG38704.1| 50S ribosomal protein L4 [Paenibacillus sp. HGF5]
Length = 207
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 118/200 (59%), Gaps = 1/200 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N G + L VF + ++H V Q A ++GTH K SEV G G+K
Sbjct: 4 VALYNVSGSQVGEVELNEAVFGIEPNAHVLHSAVLLQRASLRRGTHKVKGRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G++R PQ++GG + GP PRS+ KL KKVRRL +K ALS++ + +
Sbjct: 64 PWKQKGTGRARQGSIRSPQWKGGGVVFGPTPRSYTFKLPKKVRRLAIKSALSSKVIDNAI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + L + + KTK N + ++ +K L+ + + L+ +N+ V + + G+N
Sbjct: 124 IVLDQLTLNTPKTKEFANILSNLKVGRKALIV-APSYDDNVALSARNIPGVKFVAADGIN 182
Query: 281 VYSILQHDTLVMSRDAVNKI 300
V +L +D L+++++AV K+
Sbjct: 183 VLDVLSYDQLIITKEAVQKV 202
>gi|325261495|ref|ZP_08128233.1| ribosomal protein L4/L1 family protein [Clostridium sp. D5]
gi|324032949|gb|EGB94226.1| ribosomal protein L4/L1 family protein [Clostridium sp. D5]
Length = 206
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 119/200 (59%), Gaps = 2/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G + L VF V + + ++H V QLA +QGT KT +EVSG G+K
Sbjct: 4 VSVYNIEGKEVGTIDLNDAVFGVDVNEHLVHMAVVSQLANNRQGTQKAKTRAEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ GG + P PR ++ K+NKK +R LK AL++R E K
Sbjct: 64 PWRQKGTGHARQGSTRSPQWTGGGVVFAPVPRDYSFKMNKKEKRAALKSALTSRVEENKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V ++L KTK N + K +++ + G ++ ++++ +N+ V + +N
Sbjct: 124 IVIDELNFDEIKTKKFQEVLNNLNVNKALVVLEDG--NKNVEISARNIKEVKTAHTNTIN 181
Query: 281 VYSILQHDTLVMSRDAVNKI 300
V+ IL+++T+++++ AV I
Sbjct: 182 VFDILKYNTVIVTKAAVATI 201
>gi|372324928|ref|ZP_09519517.1| LSU ribosomal protein L4p (L1e) [Oenococcus kitaharae DSM 17330]
gi|366983736|gb|EHN59135.1| LSU ribosomal protein L4p (L1e) [Oenococcus kitaharae DSM 17330]
Length = 207
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 113/198 (57%), Gaps = 4/198 (2%)
Query: 106 FFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
F +D G + L VF + + ++ V Q A +QGTHS K S VSG G+KPW
Sbjct: 6 LFKQDGAKAGEVELNDAVFAIVPNEAVVTDAVLMQRASMRQGTHSVKNRSAVSGGGRKPW 65
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQKGTG AR G++R PQ+RGG GP PRS++ K+N+K RL LK ALS + A+ +V
Sbjct: 66 RQKGTGNARQGSIRAPQWRGGGISMGPTPRSYSYKINRKAYRLALKSALSDKVAQQNFIV 125
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
+ + TK +++ +TKK LL E +KL+ +NL V V+ + G+NVY
Sbjct: 126 VDKFDFDKPSTKLFAENLSKLNSTKKTLLVIDAA-DENVKLSARNLPNVQVVTAQGVNVY 184
Query: 283 SILQHDTLVMSRDAVNKI 300
+++ +V++ A ++
Sbjct: 185 DLVRAQKVVIAESAAKQV 202
>gi|257431697|ref|ZP_05608060.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
E1410]
gi|257282576|gb|EEV12708.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
E1410]
Length = 207
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/189 (40%), Positives = 110/189 (58%), Gaps = 1/189 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ VF + ++ + Q A +QGTH+ K S VSG G+KPW+QKGTGRAR
Sbjct: 15 GSIELSDAVFGIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVSGGGRKPWKQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
GT+R PQ+RGG + GP PRS+A K+ KK+RRL L+ ALS + E L + + +
Sbjct: 75 QGTIRAPQWRGGGIVFGPTPRSYAYKMPKKMRRLALRSALSFKVQENGLTLVDAFNFEAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KTK N + +E KKVL+ ++L+ +N+ V V + GLNV I D+LV
Sbjct: 135 KTKEFKNVLSTLEQPKKVLVVTENE-DVNVELSARNIPGVQVTTAQGLNVLDITNADSLV 193
Query: 292 MSRDAVNKI 300
++ A K+
Sbjct: 194 ITEAAAKKV 202
>gi|225027479|ref|ZP_03716671.1| hypothetical protein EUBHAL_01735 [Eubacterium hallii DSM 3353]
gi|224955214|gb|EEG36423.1| 50S ribosomal protein L4 [Eubacterium hallii DSM 3353]
Length = 198
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 119/195 (61%), Gaps = 14/195 (7%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ +F VP+ + ++H+ V QLA ++QGT KT SEV G G+KPWRQKGTG AR
Sbjct: 7 GTIELSDSIFAVPVNEHLVHQAVVAQLANKRQGTQKAKTRSEVRGGGRKPWRQKGTGHAR 66
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+ GG + P PR +++K+NKK ++L +K L+++ E K +V ++L++
Sbjct: 67 QGSIRAPQWTGGGVVFAPTPRDYSVKMNKKEKQLAMKSVLTSKVNESKFIVLDELKLAEI 126
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG------LNVYSIL 285
KTK I + ++ K +++ EK + ++ N LP V +NVY IL
Sbjct: 127 KTKQIKAVLDNLKVEKALIVT-----KEKDDVVVKS---ANNLPKVATTALNNINVYDIL 178
Query: 286 QHDTLVMSRDAVNKI 300
++DT+V++ +AV I
Sbjct: 179 KYDTVVVTSEAVAAI 193
>gi|315649698|ref|ZP_07902782.1| ribosomal protein L4/L1e [Paenibacillus vortex V453]
gi|315274886|gb|EFU38262.1| ribosomal protein L4/L1e [Paenibacillus vortex V453]
Length = 207
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 118/200 (59%), Gaps = 1/200 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N G + L VF + ++H V Q A ++GTH K SEV G G+K
Sbjct: 4 VALYNVSGSQVGEVELNEAVFGIEPNTHVLHSAVLLQRASLRRGTHKVKGRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G++R PQ++GG + GP PRS+ KL KKVRRL +K ALS++ + +
Sbjct: 64 PWKQKGTGRARQGSIRSPQWKGGGVVFGPTPRSYTFKLPKKVRRLAIKSALSSKVIDNAI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + L + + KTK N + ++ +K L+ + + L+ +N+ V + + G+N
Sbjct: 124 IVLDQLTLNTPKTKEFANILSNLKVGRKALIV-APSYDDNVALSARNIPGVKFVAADGIN 182
Query: 281 VYSILQHDTLVMSRDAVNKI 300
V +L +D L+++++AV K+
Sbjct: 183 VLDVLSYDQLIITKEAVQKV 202
>gi|312880371|ref|ZP_07740171.1| LSU ribosomal protein L4P [Aminomonas paucivorans DSM 12260]
gi|310783662|gb|EFQ24060.1| LSU ribosomal protein L4P [Aminomonas paucivorans DSM 12260]
Length = 208
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 115/200 (57%), Gaps = 7/200 (3%)
Query: 104 TNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWR 163
NF + G L+ VF P+ +H+VV LA + GTH TK EV G G+KPWR
Sbjct: 7 VNFQGDVIGEFELSDAVFSAPVHAPAMHQVVVAHLANCRLGTHDTKDRGEVRGGGRKPWR 66
Query: 164 QKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVF 223
QK TGRAR G+ R P + GG HGP PR + K+NKKVRRL L+ AL+ +A E LLV
Sbjct: 67 QKHTGRARQGSTRSPIWVGGGVAHGPHPRDYHQKVNKKVRRLALRSALTLKAQEEVLLVL 126
Query: 224 EDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHE---KLKLATQNLHYVNVLPSVGLN 280
+ ++ + KTK ++ + ++++ KK LL HE ++ + N+ VL LN
Sbjct: 127 DRFDLDAPKTKAMLAFLGKVQSGKKPLL----VTHESDPRVHKSAANIPGAAVLHVDSLN 182
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY +L HD L+++ +A KI
Sbjct: 183 VYDLLHHDQLIVTAEAARKI 202
>gi|402904327|ref|XP_003914998.1| PREDICTED: 39S ribosomal protein L4, mitochondrial-like, partial
[Papio anubis]
Length = 220
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 112/186 (60%), Gaps = 7/186 (3%)
Query: 124 PIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGG 183
P R DI+H+V WQ ++ TKT +EV G G+KPW QKGTGRARHG++R P +RGG
Sbjct: 16 PCRLDILHQVAMWQKNFKRISYAKTKTRAEVRGGGRKPWPQKGTGRARHGSIRSPIWRGG 75
Query: 184 TTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQ 242
HGP+ P S+ L KVR LGLK+ALS + A+ L + + LE+P+ +++
Sbjct: 76 GVAHGPRGPTSYYYMLPMKVRALGLKVALSIKLAQDDLHIMDSLELPTGDPQYLTELARY 135
Query: 243 MENTKKVLLCDGGCIHEKLKL----ATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVN 298
VLL D +E++ AT L N++P+VGLNV+S+L+H TLV++ +
Sbjct: 136 RRWGDSVLLVD--LTYEEMPQSIVEATSRLKTFNLIPAVGLNVHSMLKHQTLVLTLPTIA 193
Query: 299 KIVDRM 304
+ D++
Sbjct: 194 FLEDKL 199
>gi|307170893|gb|EFN63004.1| 39S ribosomal protein L4, mitochondrial [Camponotus floridanus]
Length = 285
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 113/201 (56%), Gaps = 2/201 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++ R DIIH+ VRWQ R TKT +EV G G+KPW QKGTGRAR
Sbjct: 70 GLITLHPHIYAAAPRIDIIHQNVRWQKMYRWVCYAHTKTRAEVRGGGRKPWPQKGTGRAR 129
Query: 172 HGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPS 230
HG++R P +RGG HGP+ P +H L R GL LS + A+ L + +LE+P+
Sbjct: 130 HGSIRSPLWRGGGIAHGPRSPTTHFYMLPFYTRVAGLTSTLSVKLAQDDLHIVNELEIPT 189
Query: 231 HKTKFIVNYYNQMENTKKVLLCDGGCIH-EKLKLATQNLHYVNVLPSVGLNVYSILQHDT 289
+ +I + VL D I + LAT + +VN++P GLNVYS+L+H+T
Sbjct: 190 SEPSYIEQLIEKRNWGPSVLFVDSYDIMPTNITLATDEIKHVNLMPVYGLNVYSMLKHNT 249
Query: 290 LVMSRDAVNKIVDRMHTPINR 310
LV++ A I +++ ++R
Sbjct: 250 LVLTEKAARLIEEKLLYQLHR 270
>gi|335047491|ref|ZP_08540512.1| 50S ribosomal protein L4 [Parvimonas sp. oral taxon 110 str. F0139]
gi|333761299|gb|EGL38854.1| 50S ribosomal protein L4 [Parvimonas sp. oral taxon 110 str. F0139]
Length = 207
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 122/205 (59%), Gaps = 8/205 (3%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P N +N E G + L +F V + + +++ VV+ LA R+QGT S KT +EV G
Sbjct: 1 MPKVNVYNQLGEVVGDIELNEAIFGVEVNEHVVYEVVKNHLANRRQGTQSAKTRAEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ++GG + PKPRS+ + KKVRRL ++ LS++ E
Sbjct: 61 GRKPWRQKGTGRARQGSIRAPQWKGGGVVFAPKPRSYRYSVPKKVRRLAMRSVLSSKVLE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQ--MENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
G+L + + L V + TK +E ++L +G +E + + NL V +
Sbjct: 121 GELRILDALTVDAFSTKKAKEILKNLSLETKTMIVLPEG---NEMIVKSFANLPKVETVV 177
Query: 276 SVGLNVYSILQHDTLVMSRDAVNKI 300
+NVY +++ D LV+ +DA++KI
Sbjct: 178 VDYMNVYDLMRFDNLVIVKDALSKI 202
>gi|116493162|ref|YP_804897.1| 50S ribosomal protein L4P [Pediococcus pentosaceus ATCC 25745]
gi|421894155|ref|ZP_16324646.1| 50S ribosomal protein L4 [Pediococcus pentosaceus IE-3]
gi|122265374|sp|Q03EB7.1|RL4_PEDPA RecName: Full=50S ribosomal protein L4
gi|116103312|gb|ABJ68455.1| LSU ribosomal protein L4P [Pediococcus pentosaceus ATCC 25745]
gi|385272983|emb|CCG90018.1| 50S ribosomal protein L4 [Pediococcus pentosaceus IE-3]
Length = 207
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 114/200 (57%), Gaps = 4/200 (2%)
Query: 104 TNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ F +D G + L D+F + D++ V Q A +QGTH+ K S V G G+K
Sbjct: 4 VSLFKQDGTKNGDVELNADIFGIEPNNDVVFEAVVMQRASMRQGTHAVKNRSAVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+RGG + GP PRS+A + KK+RRL LK LS + + L
Sbjct: 64 PWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYSIPKKMRRLALKSVLSQKVLDESL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V ++ + + KTK + KK LL +E LA +NL V ++ G+N
Sbjct: 124 VVVDEFKFETPKTKDFAQSLGNLNVDKKALLVLEED-NESAVLAARNLSNVKIVEPEGIN 182
Query: 281 VYSILQHDTLVMSRDAVNKI 300
V I+ D LV+++ A++++
Sbjct: 183 VLDIMNSDKLVITQKALSQV 202
>gi|331702079|ref|YP_004399038.1| 50S ribosomal protein L4 [Lactobacillus buchneri NRRL B-30929]
gi|406027552|ref|YP_006726384.1| 50S ribosomal protein L4 [Lactobacillus buchneri CD034]
gi|329129422|gb|AEB73975.1| ribosomal protein L4/L1e [Lactobacillus buchneri NRRL B-30929]
gi|405126041|gb|AFS00802.1| 50S ribosomal protein L4 [Lactobacillus buchneri CD034]
Length = 207
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 116/191 (60%), Gaps = 5/191 (2%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +F + +++ + Q A +QGTHS K S V G GKKPWRQKGTGRAR
Sbjct: 15 GTVALNDGIFGIEPNNNVVFDAIVMQRASLRQGTHSVKNRSAVRGGGKKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+RGG + GP PRS++ +L KKV RL LK LS + ++ KL+V + L+ +
Sbjct: 75 QGSIRSPQWRGGGIVFGPTPRSYSYRLPKKVSRLALKSVLSEKVSDNKLVVVDTLQFDAP 134
Query: 232 KTKFIVNYYNQMENTKK--VLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDT 289
KTK +++ + K V+L D +EK L+ +NL V V+ + G+N + HD
Sbjct: 135 KTKEFAELLGKLDVSTKTLVVLEDD---NEKAVLSARNLENVKVVSAQGINTLDVADHDK 191
Query: 290 LVMSRDAVNKI 300
+V+++ A++++
Sbjct: 192 VVITKAALSQV 202
>gi|440891545|gb|ELR45161.1| 39S ribosomal protein L4, mitochondrial [Bos grunniens mutus]
Length = 294
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/261 (34%), Positives = 137/261 (52%), Gaps = 16/261 (6%)
Query: 53 GLSFLASRKFSTTILTPDSSEGAFPSDLLLKKTVLTPDITIGLH----QDLVIPVTNFFN 108
GLS L + P+ A P +L++ ++ + LH Q V + +
Sbjct: 20 GLSALTEEAVQSAE-KPEPLANAGPQAPVLRRC----ELPVPLHRRPVQAWVESLRGYEQ 74
Query: 109 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTG 168
E G L DVF R DI+H+V WQ ++ TKT +EV G G+KPW+QKG+G
Sbjct: 75 ERVGLTELHPDVFSTAPRLDILHQVAIWQKNFKRISYAKTKTRAEVRGGGRKPWQQKGSG 134
Query: 169 RARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLE 227
RARHG++R P +RGG HGP+ P S+ L KVR GLK+AL+ + A+ L + + LE
Sbjct: 135 RARHGSIRSPIWRGGGVAHGPRGPTSYYYMLPMKVRVQGLKVALTVKLAQDDLHIVDSLE 194
Query: 228 VPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLK----LATQNLHYVNVLPSVGLNVYS 283
+P+ +++ VL D HE + AT L N++P++GLNV+S
Sbjct: 195 LPTTDPQYLTELARCRRWGDSVLFVD--LEHEDMPQNVVAATSGLKTFNLIPAIGLNVHS 252
Query: 284 ILQHDTLVMSRDAVNKIVDRM 304
+L+H TLV++ V + +++
Sbjct: 253 MLKHQTLVLTLPTVAFLEEKL 273
>gi|426228959|ref|XP_004008562.1| PREDICTED: 39S ribosomal protein L4, mitochondrial [Ovis aries]
Length = 288
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/213 (37%), Positives = 120/213 (56%), Gaps = 7/213 (3%)
Query: 97 QDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSG 156
Q V + + E G L DVF R DI+H+V WQ ++ TKT +EV G
Sbjct: 57 QAWVESLRGYEQERVGLTELHPDVFSTAPRLDILHQVAIWQKNFKRISYAKTKTRAEVRG 116
Query: 157 TGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARA 215
G+KPW+QKG+GRARHG++R P +RGG HGP+ P S+ L KVR GLK+AL+ +
Sbjct: 117 GGRKPWQQKGSGRARHGSIRSPIWRGGGIAHGPRGPTSYYYMLPMKVRVQGLKVALTVKL 176
Query: 216 AEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLK----LATQNLHYV 271
A+ L + + LE+P+ ++++ VL D HE + AT L
Sbjct: 177 AQDDLHIVDSLELPTTDPQYLMELARHRRWGDSVLFVD--LEHEDMPQNAVAATSGLKTF 234
Query: 272 NVLPSVGLNVYSILQHDTLVMSRDAVNKIVDRM 304
N++P+VGLNV+S+L+H TLV++ V + +++
Sbjct: 235 NLIPAVGLNVHSMLKHQTLVLTLPTVAFLEEKL 267
>gi|358465881|ref|ZP_09175766.1| hypothetical protein HMPREF9093_00226 [Fusobacterium sp. oral taxon
370 str. F0437]
gi|357069586|gb|EHI79479.1| hypothetical protein HMPREF9093_00226 [Fusobacterium sp. oral taxon
370 str. F0437]
Length = 209
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/199 (38%), Positives = 120/199 (60%), Gaps = 1/199 (0%)
Query: 100 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
V+ V N + G + + VF + K ++H V+ +LA +QGT STKT + V G G+
Sbjct: 3 VLNVYNLAGDQTGTVEVNDAVFGIEPNKVVLHEVLTAELAAARQGTASTKTRAMVRGGGR 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
KP++QKGTGRAR G++R P GG GP PRS+ K+NKKVR L L+ ALSA+ A G
Sbjct: 63 KPFKQKGTGRARQGSIRAPHMVGGGVTFGPHPRSYEKKVNKKVRNLALRSALSAKVAAGN 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHE-KLKLATQNLHYVNVLPSVG 278
+LV + + + KTK IVN N+++ +K L G I + L L+ +NL +L
Sbjct: 123 VLVLDYDGIDTPKTKVIVNLVNKVDAKQKQLFVVGDLIKDYNLYLSARNLENAVILQPNE 182
Query: 279 LNVYSILQHDTLVMSRDAV 297
+ VY +L+ + ++++++A+
Sbjct: 183 IGVYWLLKQEKVILTKEAL 201
>gi|332655144|ref|ZP_08420885.1| ribosomal protein L4/L1 family protein [Ruminococcaceae bacterium
D16]
gi|332516004|gb|EGJ45613.1| ribosomal protein L4/L1 family protein [Ruminococcaceae bacterium
D16]
Length = 206
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 119/195 (61%), Gaps = 2/195 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V N + G + L+ VF + + ++H VV+ LA +QGT S T +EVSG GKKPW
Sbjct: 6 VFNMAGQQVGEIELSEAVFGIEPNQAVVHEVVKNHLANCRQGTQSALTRAEVSGGGKKPW 65
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQKGTG AR G+ R PQ+ G + PKPR ++ LNKKV+RL LK ALSA+AA G +LV
Sbjct: 66 RQKGTGHARQGSTRAPQWTHGGIVFAPKPRDYSYTLNKKVKRLALKSALSAKAASGDILV 125
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
++L++ + KTK + N+ N +E K V++ ++E + + +N+ V + L+VY
Sbjct: 126 VDELKLDAIKTKDMRNFLNAVEAGKSVVITPE--VNEIVVKSARNIPGVVTTTAKILSVY 183
Query: 283 SILQHDTLVMSRDAV 297
I+ LV+ + A+
Sbjct: 184 DIVNAKRLVIDKAAL 198
>gi|297618383|ref|YP_003703542.1| 50S ribosomal protein L4/L1e [Syntrophothermus lipocalidus DSM
12680]
gi|297146220|gb|ADI02977.1| ribosomal protein L4/L1e [Syntrophothermus lipocalidus DSM 12680]
Length = 208
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 124/202 (61%), Gaps = 5/202 (2%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+P+ N G + L+ +VF + + +H+VV+ QLA + GT +TKT EV G G+K
Sbjct: 4 VPLYNMNGTQVGEIELSDEVFGIEPNQAAMHQVVKMQLANHRVGTAATKTRGEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQKGTGRAR G++R P +R G + GP+PR ++ L KK+RRL LK ALS++ +
Sbjct: 64 PYRQKGTGRARAGSIRSPLWRKGGVVFGPQPRDYSYTLPKKIRRLALKSALSSKVKGRNM 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLL--CDGGCIHEKLKLATQNLHYVNVLPSVG 278
+V ++L + + KTK +V N ++ +K L+ DG K + +N+ + + +
Sbjct: 124 IVMDELTLEAPKTKRMVEILNALQVDRKALIVTADGDVNVYK---SARNIPGIKPVRADF 180
Query: 279 LNVYSILQHDTLVMSRDAVNKI 300
++VY IL HD LV+++DAV K+
Sbjct: 181 MSVYDILNHDKLVITKDAVAKV 202
>gi|451980684|ref|ZP_21929070.1| 50S ribosomal protein L4 [Nitrospina gracilis 3/211]
gi|451762020|emb|CCQ90309.1| 50S ribosomal protein L4 [Nitrospina gracilis 3/211]
Length = 208
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/208 (37%), Positives = 125/208 (60%), Gaps = 8/208 (3%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHST-KTISEVSGTGK 159
+ + N N+ G L+ +VF+ P+R+ ++ + V QLA ++ GT ST + ++SG GK
Sbjct: 4 LEIVNTENKKVGTATLSPEVFEGPVREHLVQQYVVMQLATKRSGTASTIENRGDISGGGK 63
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
KPWRQKGTGRARHG+ R +RGG T+ GP+PR++ KL+KK R+L ++ L+ R
Sbjct: 64 KPWRQKGTGRARHGSTRSTIWRGGMTVFGPRPRAYTHKLSKKSRKLAIRSVLAERLQSNN 123
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEK---LKLATQNLHYVNVLPS 276
+ V E L + KTK + ++ +K L + EK L+LA +NL VNVL
Sbjct: 124 IQVVESLNLEEPKTKQALALLGKLGLPEKTLF----LVAEKNPNLELAVRNLPQVNVLSV 179
Query: 277 VGLNVYSILQHDTLVMSRDAVNKIVDRM 304
G+NV+ +L H +V + D++ K+ +R+
Sbjct: 180 EGVNVFDLLVHQKIVCTPDSLKKLEERL 207
>gi|336179781|ref|YP_004585156.1| 50S ribosomal protein L4 [Frankia symbiont of Datisca glomerata]
gi|334860761|gb|AEH11235.1| ribosomal protein L4/L1e [Frankia symbiont of Datisca glomerata]
Length = 263
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/206 (41%), Positives = 118/206 (57%), Gaps = 10/206 (4%)
Query: 110 DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGR 169
+ G + L G++FDV + +IH+VV QLA +QGTHST+T EV G G+KP+RQKGTGR
Sbjct: 37 EAGSVDLPGEIFDVALNVPLIHQVVVAQLAAARQGTHSTRTRGEVRGGGRKPYRQKGTGR 96
Query: 170 ARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV---FEDL 226
AR G+LR PQF GG +HGPKPRS+ + KK++ L+ ALS RA G++ V F
Sbjct: 97 ARQGSLRAPQFTGGGVVHGPKPRSYEQRTPKKMKAAALRGALSDRARGGRVHVVSSFVSG 156
Query: 227 EVPSHKTKFIVNYYNQMENTKKVLLCDGGCIH--EKLKLATQNLHYVNVLPSVGLNVYSI 284
+ PS KT + V H E + +N+ V++L LN Y +
Sbjct: 157 DTPSTKTAVTA-----LRTITDVRRVLVVVDHTDELTWKSLRNIPSVHLLDPGQLNTYDV 211
Query: 285 LQHDTLVMSRDAVNKIVDRMHTPINR 310
L D +V +RDA+ V+R PI+R
Sbjct: 212 LVSDDVVFTRDALATFVERALAPISR 237
>gi|294085959|ref|YP_003552719.1| 50S ribosomal protein L4 [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292665534|gb|ADE40635.1| 50S ribosomal protein L4 [Candidatus Puniceispirillum marinum
IMCC1322]
Length = 258
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/202 (43%), Positives = 122/202 (60%), Gaps = 2/202 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V N+ G + + VF V R D++ RVV+WQLAKR+ G+H K+ SEV+ T K +
Sbjct: 58 VKTLDNKAAGDITVDDTVFAVAPRADLLARVVKWQLAKRRAGSHKVKSRSEVARTTAKMF 117
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQKGTGRARHG QFRGG +HGP R H L KKVRR GL+ ALS++A+EGKL+V
Sbjct: 118 RQKGTGRARHGAASVVQFRGGGVVHGPVVRDHGHALPKKVRRAGLRSALSSKASEGKLIV 177
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
+ L V KT + +++ + L+ G + A N+ V+VLP G+NVY
Sbjct: 178 LDKL-VSKGKTAALRAQLSKL-GAENALIIGGEELDAGFVNAASNIPLVDVLPQQGINVY 235
Query: 283 SILQHDTLVMSRDAVNKIVDRM 304
IL+ D L++S+DA + +R+
Sbjct: 236 DILRRDVLILSKDAAAHLEERL 257
>gi|389577501|ref|ZP_10167529.1| 50S ribosomal protein L4, bacterial/organelle [Eubacterium
cellulosolvens 6]
gi|389312986|gb|EIM57919.1| 50S ribosomal protein L4, bacterial/organelle [Eubacterium
cellulosolvens 6]
Length = 206
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 119/200 (59%), Gaps = 2/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N + G M L+ VF V I+++++H+ V QLA +QGT KT SEV G G+K
Sbjct: 4 VSVYNMEGAEVGKMELSDAVFGVEIKENLVHQAVVLQLANNRQGTQKAKTRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ GG + P PR ++ K+N+K ++ LK L+++ E K
Sbjct: 64 PWRQKGTGHARQGSTRAPQWTGGGVVFAPTPRDYSFKMNRKEKQAALKSVLTSKVQENKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
LV ++L+ + KTK + + ++ K +++ G + L+ +NL V + +N
Sbjct: 124 LVLDELKFDAPKTKEMKKVIDALKVEKALVIV--GKDSDNAVLSARNLEGVATASAETIN 181
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY +L+++T++ ++ +V I
Sbjct: 182 VYDLLKYNTVIATKSSVAAI 201
>gi|294784803|ref|ZP_06750091.1| ribosomal protein L4/L1 family protein [Fusobacterium sp. 3_1_27]
gi|294486517|gb|EFG33879.1| ribosomal protein L4/L1 family protein [Fusobacterium sp. 3_1_27]
Length = 209
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/199 (38%), Positives = 119/199 (59%), Gaps = 1/199 (0%)
Query: 100 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
V+ V N + G + + VF + K ++H V+ +LA +QGT STKT + V G G+
Sbjct: 3 VLNVYNLAGDQTGTLEVNDAVFGIEPNKVVLHEVLTAELAAARQGTASTKTRAMVRGGGR 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
KP++QKGTGRAR G++R P GG GP PRS+ K+NKKVR L L+ ALSA+ A G
Sbjct: 63 KPFKQKGTGRARQGSIRAPHMVGGGVTFGPHPRSYEKKVNKKVRNLALRSALSAKVAAGN 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHE-KLKLATQNLHYVNVLPSVG 278
+LV + + + KTK IVN N+++ +K L G I + L L+ +NL +L
Sbjct: 123 VLVLDYDGIETPKTKVIVNLVNKVDAKQKQLFVVGDLIKDYNLYLSARNLENAVILQPNE 182
Query: 279 LNVYSILQHDTLVMSRDAV 297
+ VY +L+ + ++ +++A+
Sbjct: 183 IGVYWLLKQEKVIFTKEAL 201
>gi|335282607|ref|XP_003123269.2| PREDICTED: 39S ribosomal protein L4, mitochondrial-like [Sus
scrofa]
Length = 294
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 80/213 (37%), Positives = 120/213 (56%), Gaps = 7/213 (3%)
Query: 97 QDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSG 156
Q + + + E G L DVF R DI+H+V WQ ++ TKT +EV G
Sbjct: 63 QAWIESLRGYEQERVGLTELHPDVFSTAPRLDILHQVAIWQKNFKRISYAKTKTRAEVRG 122
Query: 157 TGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARA 215
G+KPW QKG+GRARHG++R P +RGG HGP+ P S+ L KVR GLK+AL+ +
Sbjct: 123 GGRKPWVQKGSGRARHGSIRSPIWRGGGVAHGPRGPTSYYYMLPMKVRVQGLKVALTVKL 182
Query: 216 AEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLK----LATQNLHYV 271
A+ L + + LE+P+ ++++ VLL D HE + AT L
Sbjct: 183 AQDDLHIVDSLELPTADPQYLIELARYRRWGDSVLLVD--LEHEDMPQNVVAATSGLKTF 240
Query: 272 NVLPSVGLNVYSILQHDTLVMSRDAVNKIVDRM 304
N++P+VGLNV+S+L+H TLV++ V + +++
Sbjct: 241 NLVPAVGLNVHSMLKHQTLVLTLPTVAFLEEKL 273
>gi|227894521|ref|ZP_04012326.1| 50S ribosomal protein L4 [Lactobacillus ultunensis DSM 16047]
gi|227863680|gb|EEJ71101.1| 50S ribosomal protein L4 [Lactobacillus ultunensis DSM 16047]
Length = 205
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 116/200 (58%), Gaps = 3/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + +D G + L VF + ++ + Q A ++QGT K S V G GKK
Sbjct: 4 LKVMDQNGKDSGEVTLNDKVFGIEPNDSVVFEAIIRQRAGKRQGTSKVKNRSVVRGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+RGG T+ GP PRS+A + +K RRL +K LS + + L
Sbjct: 64 PWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYAYTMPRKQRRLAIKSVLSQKLIDKDL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + L + + KTK +V+ + + KVL+ ++L+ +NL V V+P GLN
Sbjct: 124 IVLDKLTMSAPKTKELVSMLSSLNADGKVLIVSD---DNNVQLSARNLTKVKVVPVNGLN 180
Query: 281 VYSILQHDTLVMSRDAVNKI 300
V + + L++++DAV KI
Sbjct: 181 VEDAVNYGKLILTQDAVKKI 200
>gi|111023097|ref|YP_706069.1| 50S ribosomal protein L4 [Rhodococcus jostii RHA1]
gi|397736517|ref|ZP_10503199.1| 50S ribosomal protein L4 [Rhodococcus sp. JVH1]
gi|110822627|gb|ABG97911.1| 50S ribosomal protein L4 [Rhodococcus jostii RHA1]
gi|396927707|gb|EJI94934.1| 50S ribosomal protein L4 [Rhodococcus sp. JVH1]
Length = 229
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 115/193 (59%), Gaps = 6/193 (3%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++FD P ++H+VV QLA +QGTH+TKT EV G GKKP+RQKGTGRAR
Sbjct: 24 GTVDLPAEIFDAPANIALLHQVVVAQLAAARQGTHATKTRGEVRGGGKKPYRQKGTGRAR 83
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL---EV 228
G+ R PQF GG T+HGP+PR ++ + KK++ L+ ALS RA ++ V +L +
Sbjct: 84 QGSTRAPQFAGGGTVHGPQPRDYSQRTPKKMKAAALRGALSDRARNERIHVITELVAGQT 143
Query: 229 PSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHD 288
PS TK + ++ + KKVLL G K + QNL V+ + LN Y +L D
Sbjct: 144 PS--TKSARTFLGEISDRKKVLLVVGREDIAAWK-SVQNLDGVHPIAPDQLNTYDVLNSD 200
Query: 289 TLVMSRDAVNKIV 301
+V S +A+N +
Sbjct: 201 DVVFSVEALNSFI 213
>gi|183981054|ref|YP_001849345.1| 50S ribosomal protein L4 [Mycobacterium marinum M]
gi|226730696|sp|B2HSN2.1|RL4_MYCMM RecName: Full=50S ribosomal protein L4
gi|183174380|gb|ACC39490.1| 50S ribosomal protein L4, RplD [Mycobacterium marinum M]
Length = 224
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 83/209 (39%), Positives = 122/209 (58%), Gaps = 6/209 (2%)
Query: 96 HQDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVS 155
+DL I V + G + L ++FDVP ++H+VV Q A +QGTHSTKT +VS
Sbjct: 9 QKDLEIQVKTPDGKVDGSVALPAELFDVPANIALMHQVVTAQRAAARQGTHSTKTRGDVS 68
Query: 156 GTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARA 215
G G+KP+RQKGTGRAR G+ R PQF GG +HGPKPR ++ + KK+ L+ ALS RA
Sbjct: 69 GGGRKPYRQKGTGRARQGSTRAPQFTGGGVVHGPKPRDYSQRTPKKMIAAALRGALSDRA 128
Query: 216 AEGKLLVFEDL---EVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVN 272
G++ +L + PS TK + + + K+VL+ G +K + +NL V+
Sbjct: 129 RNGRIHAVTELVAGQTPS--TKSAKTFLATITDRKQVLVVIGRDDQTGVK-SVRNLPGVH 185
Query: 273 VLPSVGLNVYSILQHDTLVMSRDAVNKIV 301
+L LN Y +L+ D +V S +A+N +
Sbjct: 186 ILSPDQLNTYDVLRADDVVFSVEALNAYI 214
>gi|260584417|ref|ZP_05852164.1| 50S ribosomal protein L4/L1 [Granulicatella elegans ATCC 700633]
gi|260157935|gb|EEW93004.1| 50S ribosomal protein L4/L1 [Granulicatella elegans ATCC 700633]
Length = 207
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 117/194 (60%), Gaps = 1/194 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L D+F + ++++ V Q A +QGTH+ K S VSG G+KPWRQKGTGRAR
Sbjct: 15 GEIELNSDIFGIEPNENVVFDAVIMQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+RGG + GP PRS++ KL +KVRRL +K LS + + KL+V E L+ +
Sbjct: 75 QGSIRSPQWRGGGIVFGPTPRSYSYKLPRKVRRLAIKSVLSQKVLDQKLVVVEALQFDAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KTK ++ KVL+ +E +LA +N+ V V+ + V ++ +D LV
Sbjct: 135 KTKEFAQVLANLKVDTKVLVVVESS-NEFAQLAARNIPNVTVVDETQVTVLDVVNNDKLV 193
Query: 292 MSRDAVNKIVDRMH 305
+++ A++K+ + +
Sbjct: 194 LTQAALSKVEEGLQ 207
>gi|419961176|ref|ZP_14477185.1| 50S ribosomal protein L4 [Rhodococcus opacus M213]
gi|424851585|ref|ZP_18275982.1| 50S ribosomal protein L4 [Rhodococcus opacus PD630]
gi|432336150|ref|ZP_19587680.1| 50S ribosomal protein L4 [Rhodococcus wratislaviensis IFP 2016]
gi|356666250|gb|EHI46321.1| 50S ribosomal protein L4 [Rhodococcus opacus PD630]
gi|414573497|gb|EKT84181.1| 50S ribosomal protein L4 [Rhodococcus opacus M213]
gi|430776918|gb|ELB92311.1| 50S ribosomal protein L4 [Rhodococcus wratislaviensis IFP 2016]
Length = 229
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 115/193 (59%), Gaps = 6/193 (3%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++FD P ++H+VV QLA +QGTH+TKT EV G GKKP+RQKGTGRAR
Sbjct: 24 GTVDLPAEIFDAPANIALLHQVVVAQLAAARQGTHATKTRGEVRGGGKKPYRQKGTGRAR 83
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL---EV 228
G+ R PQF GG T+HGP+PR ++ + KK++ L+ ALS RA ++ V +L +
Sbjct: 84 QGSTRAPQFAGGGTVHGPQPRDYSQRTPKKMKAAALRGALSDRARNERIHVITELVAGQT 143
Query: 229 PSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHD 288
PS TK + ++ + KKVLL G K + QNL V+ + LN Y +L D
Sbjct: 144 PS--TKSARTFLGEISDRKKVLLVVGREDIAAWK-SVQNLDGVHPIAPDQLNTYDVLNSD 200
Query: 289 TLVMSRDAVNKIV 301
+V S +A+N +
Sbjct: 201 DVVFSVEALNAFI 213
>gi|262197187|ref|YP_003268396.1| 50S ribosomal protein L4 [Haliangium ochraceum DSM 14365]
gi|262080534|gb|ACY16503.1| ribosomal protein L4/L1e [Haliangium ochraceum DSM 14365]
Length = 215
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 85/210 (40%), Positives = 118/210 (56%), Gaps = 5/210 (2%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N E G + L +F + + + VV+WQ A+R+ GTHSTK EV G+ K
Sbjct: 4 LDIKNTAGETVGDIDLDDAIFAEEVHEHLFWEVVKWQRARRRAGTHSTKRRGEVRGSNIK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQKGTGRAR G + P + GG ++ GPKPRS+ L KKVR+ L+ ALS RA E KL
Sbjct: 64 PYRQKGTGRARQGDRKAPHWVGGGSVFGPKPRSYDYALPKKVRKKALRSALSLRAKEQKL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQM---ENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+V + V KT+ +V+ + +VL+ D G + ++ T+NL L
Sbjct: 124 VVLDAFPVEGGKTRNVVSALAALGAAHTDNRVLIVDAGDNLDLIR-GTRNLRGSKWLAPE 182
Query: 278 GLNVYSILQHDTLVMSRDAVNKIVDRMHTP 307
GLNVY IL H TLVM+ A K V+R P
Sbjct: 183 GLNVYDILDHSTLVMT-SATVKAVERALQP 211
>gi|118616572|ref|YP_904904.1| 50S ribosomal protein L4 [Mycobacterium ulcerans Agy99]
gi|166234692|sp|A0PM64.1|RL4_MYCUA RecName: Full=50S ribosomal protein L4
gi|118568682|gb|ABL03433.1| 50S ribosomal protein L4, RplD [Mycobacterium ulcerans Agy99]
Length = 224
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 84/209 (40%), Positives = 123/209 (58%), Gaps = 6/209 (2%)
Query: 96 HQDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVS 155
+DL I V + G +VL ++FDVP ++H+VV Q A +QGTHSTKT +VS
Sbjct: 9 QKDLEIQVKAPDGKVDGSVVLPAELFDVPANIALMHQVVTAQRAAARQGTHSTKTRGDVS 68
Query: 156 GTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARA 215
G G+KP+RQKGTGRAR G+ R PQF GG +HGPKPR ++ + KK+ L+ ALS RA
Sbjct: 69 GGGRKPYRQKGTGRARQGSTRTPQFTGGGVVHGPKPRDYSQRTPKKMIAAALRGALSDRA 128
Query: 216 AEGKLLVFEDL---EVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVN 272
G++ +L + PS TK + + + K+VL+ G +K + +NL V+
Sbjct: 129 RNGRIHAVTELVAGQTPS--TKSAKTFLATITDRKQVLVVIGRDDQTGVK-SVRNLPGVH 185
Query: 273 VLPSVGLNVYSILQHDTLVMSRDAVNKIV 301
+L LN Y +L+ D +V S +A+N +
Sbjct: 186 ILSPDQLNTYDVLRADDVVFSVEALNAYI 214
>gi|239623348|ref|ZP_04666379.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239522314|gb|EEQ62180.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 206
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 116/201 (57%), Gaps = 4/201 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G + L VF V + + ++H V QLA ++QGT KT SEVSG G+K
Sbjct: 4 VSVYNMEGKEVGTLELNDAVFGVEVNEHLVHLAVVAQLANKRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ++GG + P PR + I+LNKK +R LK AL++R K
Sbjct: 64 PWRQKGTGHARQGSTRSPQWKGGGVVFAPTPRDYTIRLNKKEKRAALKSALTSRVQANKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQME-NTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGL 279
+V ++L+ KTK + ++ N V+L D + L+ +N+ V +
Sbjct: 124 IVVDELKFDEIKTKKFQGVMDSLKVNKALVVLADN---DQNTVLSARNVADVKTAQVDSI 180
Query: 280 NVYSILQHDTLVMSRDAVNKI 300
NVY IL+++T+V ++ AV I
Sbjct: 181 NVYDILKYNTVVATKAAVASI 201
>gi|70725804|ref|YP_252718.1| 50S ribosomal protein L4 [Staphylococcus haemolyticus JCSC1435]
gi|82581594|sp|Q4L8B3.1|RL4_STAHJ RecName: Full=50S ribosomal protein L4
gi|68446528|dbj|BAE04112.1| 50S ribosomal protein L4 [Staphylococcus haemolyticus JCSC1435]
Length = 207
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 111/190 (58%), Gaps = 3/190 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ VF + ++ + Q A +QGTH+ K S V G G+KPWRQKGTGRAR
Sbjct: 15 GSVELSDSVFAIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVRGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
GT+R PQ+RGG + GP PRS+A K+ KK+RRL L+ ALS + E + ++ +
Sbjct: 75 QGTIRAPQWRGGGIVFGPTPRSYAYKMPKKMRRLALRSALSFKVKENNFTIVDNFGFEAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLC-DGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTL 290
KTK N +E KKVL+ D ++ ++L+ +N+ V V + GLNV I D++
Sbjct: 135 KTKEFKNVLTTLEQPKKVLVVTDSEDVN--VELSARNIPGVQVSTAQGLNVLDITSADSV 192
Query: 291 VMSRDAVNKI 300
+++ A K+
Sbjct: 193 IITESAAKKV 202
>gi|322436545|ref|YP_004218757.1| 50S ribosomal protein L4 [Granulicella tundricola MP5ACTX9]
gi|321164272|gb|ADW69977.1| ribosomal protein L4/L1e [Granulicella tundricola MP5ACTX9]
Length = 226
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/211 (36%), Positives = 120/211 (56%), Gaps = 1/211 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I V N E G L +VF+ I ++ V+ A +QGT +TK VSG+GKK
Sbjct: 4 INVVNLGGEKVGEFDLLDEVFNAEINDALLWEAVKHYRAAMRQGTAATKVRKNVSGSGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
W+QKGTGRAR G++R P +RGG T+HGP+PRS+ + KK L+ A+SA+ +GK
Sbjct: 64 LWKQKGTGRARVGSIRTPIWRGGGTVHGPQPRSYDYQFPKKKLMGALRSAISAKIQDGKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGG-CIHEKLKLATQNLHYVNVLPSVGL 279
+ + EVP KTK ++E K LL + + EKL L ++NL V ++ S +
Sbjct: 124 TIVDSFEVPEAKTKLYRQALTKLETGKTTLLVESSRKLEEKLYLGSRNLQGVELVLSSEV 183
Query: 280 NVYSILQHDTLVMSRDAVNKIVDRMHTPINR 310
+ Y +L+++ V S+DA+ I + + I++
Sbjct: 184 HPYDLLRYEHAVFSKDAIEAIQETLKKAISK 214
>gi|322418365|ref|YP_004197588.1| 50S ribosomal protein L4 [Geobacter sp. M18]
gi|320124752|gb|ADW12312.1| ribosomal protein L4/L1e [Geobacter sp. M18]
Length = 207
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 118/193 (61%), Gaps = 2/193 (1%)
Query: 108 NEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGT 167
N G + ++ VF+ +R+ +IH V+ QLA R+QGT + K S V+G+GKKP++QKGT
Sbjct: 11 NAKVGEIEVSDAVFNDDVREYLIHEAVKIQLANRRQGTVAVKNRSAVAGSGKKPFKQKGT 70
Query: 168 GRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLE 227
G+AR G R PQ+ GG GP+P+++ + +NKK R+ L+ ALS + + V + E
Sbjct: 71 GQARQGCSRAPQYPGGGVAFGPQPKTYNLSMNKKARKAALRSALSMLYKKDAITVLNNFE 130
Query: 228 VPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQH 287
+P+ KTK V N K +++ D + L+L+ +N+ +V VL GLN++ I+++
Sbjct: 131 LPAVKTKGFVEVLNAFNLDKTLVITD--TANPTLELSARNVKHVKVLGPEGLNIFDIMKY 188
Query: 288 DTLVMSRDAVNKI 300
++V + AV ++
Sbjct: 189 QSVVFTEAAVRRV 201
>gi|328951235|ref|YP_004368570.1| 50S ribosomal protein L4/L1e [Marinithermus hydrothermalis DSM
14884]
gi|328451559|gb|AEB12460.1| ribosomal protein L4/L1e [Marinithermus hydrothermalis DSM 14884]
Length = 207
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 79/182 (43%), Positives = 117/182 (64%), Gaps = 5/182 (2%)
Query: 125 IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGT 184
I +++ VVRWQLAKR++GT STKT EV+ + +K + QK TGRARHG P F GG
Sbjct: 23 INPHVLYEVVRWQLAKRRRGTASTKTRGEVAYSSRKLYPQKHTGRARHGDRGAPIFVGGG 82
Query: 185 TMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY--YNQ 242
T+ GPKPR ++ L KKVR+LGL +A++ RA E KLLV E E + KTK + + N
Sbjct: 83 TVFGPKPRDYSYTLPKKVRKLGLAMAIADRAKEEKLLVVEAFEGVNGKTKEFLAWAKANG 142
Query: 243 MENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNKIVD 302
++ ++ VL+ +E ++ A +NL + +VL GLNVY IL+H+ L++ A+ ++
Sbjct: 143 LDGSETVLVV---TENELVRRAARNLPWASVLEPEGLNVYDILRHERLLLDEAALKLALE 199
Query: 303 RM 304
R+
Sbjct: 200 RI 201
>gi|150020846|ref|YP_001306200.1| 50S ribosomal protein L4 [Thermosipho melanesiensis BI429]
gi|166199920|sp|A6LLL4.1|RL4_THEM4 RecName: Full=50S ribosomal protein L4
gi|149793367|gb|ABR30815.1| ribosomal protein L4/L1e [Thermosipho melanesiensis BI429]
Length = 221
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 86/209 (41%), Positives = 120/209 (57%), Gaps = 13/209 (6%)
Query: 105 NFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQ 164
N E+ G + L +VF + +D++ R + QL + GT STKT EVSG G+KPW Q
Sbjct: 8 NIKGENIGTVELKEEVFAIEPNQDVMWRYIDMQLTNSRAGTASTKTRGEVSGGGRKPWIQ 67
Query: 165 KGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFE 224
K TGRAR G++R P +R G HGPKPR + +LNKK++RL LK ALS R E L+V +
Sbjct: 68 KHTGRARQGSIRAPHWRHGGVAHGPKPRVYFKRLNKKMKRLALKSALSLRLKENNLVVVD 127
Query: 225 DLEVPSHKTKFIVNYYNQ--MENTKK-VLLCDGGCIHEKLKLATQNLHYVNVL----PSV 277
D++ +TK + +EN K ++L +E +K++ +N+ V VL P V
Sbjct: 128 DIKFEKPRTKDLREVLKNLGLENQKVLIVLPKKESEYENVKISGRNIPGVKVLIADNPGV 187
Query: 278 ------GLNVYSILQHDTLVMSRDAVNKI 300
GLNVY IL HD LV+ + V KI
Sbjct: 188 DRVNIDGLNVYDILNHDKLVLLQGTVQKI 216
>gi|296111430|ref|YP_003621812.1| 50S ribosomal protein L4 [Leuconostoc kimchii IMSNU 11154]
gi|339491299|ref|YP_004705804.1| 50S ribosomal protein L4 [Leuconostoc sp. C2]
gi|295832962|gb|ADG40843.1| 50S ribosomal protein L4 [Leuconostoc kimchii IMSNU 11154]
gi|338852971|gb|AEJ31181.1| 50S ribosomal protein L4 [Leuconostoc sp. C2]
Length = 207
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 75/182 (41%), Positives = 111/182 (60%), Gaps = 3/182 (1%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
VF + +I V Q A +QGTH+ K S VSG G+KPW+QKGTGRAR G++R PQ
Sbjct: 23 VFAIEPNNTVITDAVLMQRASMRQGTHAVKNRSAVSGGGRKPWKQKGTGRARAGSIREPQ 82
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTK-FIVN 238
FRGG + GP PRS+A ++N+K +L LK LS + AEGKL+V + L + KT+ F
Sbjct: 83 FRGGGIVFGPSPRSYAYRINRKAYQLALKSVLSQKVAEGKLVVVDALTFEAPKTQDFKKV 142
Query: 239 YYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVN 298
N +TK +++ D +E L+ +NL V V+ + G+NV ++ D LV+ + ++
Sbjct: 143 LTNLAADTKTLVVVDEN--NENAILSARNLANVQVMTTKGINVLDVVNADKLVIVQSSIE 200
Query: 299 KI 300
+I
Sbjct: 201 EI 202
>gi|343526300|ref|ZP_08763250.1| 50S ribosomal protein L4 [Streptococcus constellatus subsp.
pharyngis SK1060 = CCUG 46377]
gi|343394251|gb|EGV06799.1| 50S ribosomal protein L4 [Streptococcus constellatus subsp.
pharyngis SK1060 = CCUG 46377]
Length = 207
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 78/194 (40%), Positives = 114/194 (58%), Gaps = 5/194 (2%)
Query: 109 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTG 168
++ G +VL VF + + + ++ VV Q A +QGTH+ K S VSG G+KPWRQKGTG
Sbjct: 12 KEAGEVVLNDAVFGIELNESVVFDVVISQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTG 71
Query: 169 RARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEV 228
RAR G++R PQ+RGG T+ GP PRS+A KL +KVRRL LK S + AE K + + L
Sbjct: 72 RARQGSIRSPQWRGGGTVFGPSPRSYAYKLPQKVRRLALKSVYSEKVAENKFVAVDSLSF 131
Query: 229 PSHKTKFIVNYYNQMENTKKVL--LCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQ 286
+ KT + KVL L +G +E L+ +NL V V + +V I+
Sbjct: 132 TAPKTAEFAKVLAALSIDSKVLVILEEG---NEFAALSARNLPNVKVATATTASVLDIVN 188
Query: 287 HDTLVMSRDAVNKI 300
D L+++++A++ I
Sbjct: 189 SDKLLVTKEAISTI 202
>gi|162446958|ref|YP_001620090.1| 50S ribosomal protein L4 [Acholeplasma laidlawii PG-8A]
gi|189029489|sp|A9NED4.1|RL4_ACHLI RecName: Full=50S ribosomal protein L4
gi|161985065|gb|ABX80714.1| large subunit ribosomal protein L4 [Acholeplasma laidlawii PG-8A]
Length = 207
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 120/201 (59%), Gaps = 6/201 (2%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P N FN E + L +F + + +++ VV Q A +QGT TKT +EV G
Sbjct: 1 MPTLNLFNQAGEKISEVALNDAIFGITPNQQVLYDVVNAQRAALRQGTAKTKTRAEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
GKKPWRQKGTGRAR G++R PQ+RGG + GP PRS+A+K+N+KV++L LK ALS
Sbjct: 61 GKKPWRQKGTGRARQGSIRSPQWRGGGIVFGPIPRSYAVKVNQKVKQLALKSALSYHVLA 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQME-NTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
L++ +++ V KTK + N ++ + + ++L D + + L LA+ NL V
Sbjct: 121 ENLVLVDNITVAEPKTKLFIEIMNNLKLDDRSIVLVD--SVDKNLLLASNNLPGAVVREV 178
Query: 277 VGLNVYSILQHDTLVMSRDAV 297
++VY +L+ +V+++ AV
Sbjct: 179 SQVSVYELLKFKQVVLTQGAV 199
>gi|408410516|ref|ZP_11181726.1| 50S ribosomal protein L4 [Lactobacillus sp. 66c]
gi|408410737|ref|ZP_11181938.1| 50S ribosomal protein L4 [Lactobacillus sp. 66c]
gi|407875076|emb|CCK83744.1| 50S ribosomal protein L4 [Lactobacillus sp. 66c]
gi|407875297|emb|CCK83532.1| 50S ribosomal protein L4 [Lactobacillus sp. 66c]
Length = 205
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 113/191 (59%), Gaps = 3/191 (1%)
Query: 110 DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGR 169
+ G + L +VF V + ++ V Q A ++QGT K S V G GKKPWRQKGTGR
Sbjct: 13 NAGEVTLNDNVFSVEPNEAVVFDAVIRQRAGKRQGTSKVKNRSAVRGGGKKPWRQKGTGR 72
Query: 170 ARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVP 229
AR G++R PQ+RGG + GP PRS+A + +K RRL +K LS + + L+V + L +
Sbjct: 73 ARQGSIRAPQWRGGGVVFGPTPRSYAYSMPRKQRRLAIKSVLSQKVLDQNLVVLDKLTLA 132
Query: 230 SHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDT 289
+ KTK V N ++ KVL+ + ++L+ +NL V V+P GLNV + +D
Sbjct: 133 APKTKDFVAILNGLKLEGKVLVV---SDDKNVQLSAKNLPKVKVVPVNGLNVEDAVNYDK 189
Query: 290 LVMSRDAVNKI 300
LV+++D V KI
Sbjct: 190 LVLTQDDVKKI 200
>gi|409349516|ref|ZP_11232951.1| 50S ribosomal protein L4 [Lactobacillus equicursoris CIP 110162]
gi|407878079|emb|CCK85009.1| 50S ribosomal protein L4 [Lactobacillus equicursoris CIP 110162]
Length = 199
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 112/189 (59%), Gaps = 3/189 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +VF V + ++ V Q A ++QGT K S V G GKKPWRQKGTGRAR
Sbjct: 9 GEVTLNDNVFSVEPNEAVVFDAVIRQRAGKRQGTSKVKNRSAVRGGGKKPWRQKGTGRAR 68
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+RGG + GP PRS+A + +K RRL +K LS + + L+V + L + +
Sbjct: 69 QGSIRAPQWRGGGVVFGPTPRSYAYSMPRKQRRLAIKSVLSQKVLDQNLVVLDKLTLAAP 128
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KTK V N ++ KVL+ + ++L+ +NL V V+P GLNV + +D LV
Sbjct: 129 KTKDFVAILNGLKLEGKVLVV---SDDKNVQLSAKNLPKVKVVPVNGLNVEDAVNYDKLV 185
Query: 292 MSRDAVNKI 300
+++D V KI
Sbjct: 186 LTQDDVKKI 194
>gi|404443138|ref|ZP_11008311.1| 50S ribosomal protein L4 [Mycobacterium vaccae ATCC 25954]
gi|403656052|gb|EJZ10876.1| 50S ribosomal protein L4 [Mycobacterium vaccae ATCC 25954]
Length = 222
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 85/209 (40%), Positives = 122/209 (58%), Gaps = 7/209 (3%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
L I V + + G + L ++FDV ++H+VV QLA ++QGTHSTKT EVSG G
Sbjct: 3 LKIDVRSPGGKTDGSIELPAELFDVEPNIALMHQVVNAQLAAKRQGTHSTKTRGEVSGGG 62
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KKP+RQKGTGRAR G+ R PQF GG +HGPKPR ++ + KK+ R L+ ALS RA
Sbjct: 63 KKPYRQKGTGRARQGSTRAPQFTGGGIVHGPKPRDYSERTPKKMIRAALRSALSDRARND 122
Query: 219 KLLVFEDL---EVPSHKT--KFIVNYY-NQMENTKKVLLCDGGCIHEKLKLATQNLHYVN 272
++ +L + PS K+ F+ ++ KVL+ G E L+ +NL V+
Sbjct: 123 RIHAVTELIEGQTPSTKSAKSFLSTLLADRAAGNNKVLVVIGRA-DEASALSVRNLPGVH 181
Query: 273 VLPSVGLNVYSILQHDTLVMSRDAVNKIV 301
V+ LN Y +L+ D +V S +A+N +
Sbjct: 182 VISPDQLNTYDVLKADDVVFSVEALNAYI 210
>gi|269925832|ref|YP_003322455.1| 50S ribosomal protein L4 [Thermobaculum terrenum ATCC BAA-798]
gi|269789492|gb|ACZ41633.1| ribosomal protein L4/L1e [Thermobaculum terrenum ATCC BAA-798]
Length = 223
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 123/205 (60%), Gaps = 2/205 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ +PV N + + ++ VF + ++H+ + QLA + GTH T+T +EVSG G
Sbjct: 1 MQLPVYNLNGDIVSQLEVSDLVFGIQPNLAVMHQALVRQLANARTGTHDTRTRAEVSGGG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
+KPWRQKGTGRAR G++R PQ+RGG + GP PRS+ ++ +K+RRL L+ ALS + AE
Sbjct: 61 RKPWRQKGTGRARQGSIRAPQWRGGGVVFGPHPRSYEQRMPRKMRRLALRSALSQKVAEE 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQME-NTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+LLV L +TK ++ ++ +KVL+ G +E ++ A NL V V+ +
Sbjct: 121 RLLVVTGLSEIEPRTKAMIAALEKLGLAGQKVLIATNGR-NESVQKAGSNLPNVKVIHAS 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKIVD 302
LN+ +L++D L + AVN + +
Sbjct: 180 NLNIADLLKYDYLFLEDGAVNSLQE 204
>gi|229489366|ref|ZP_04383229.1| ribosomal protein L4/L1 family protein [Rhodococcus erythropolis
SK121]
gi|453068364|ref|ZP_21971643.1| 50S ribosomal protein L4 [Rhodococcus qingshengii BKS 20-40]
gi|226184457|dbj|BAH32561.1| 50S ribosomal protein L4 [Rhodococcus erythropolis PR4]
gi|229323463|gb|EEN89221.1| ribosomal protein L4/L1 family protein [Rhodococcus erythropolis
SK121]
gi|452766014|gb|EME24265.1| 50S ribosomal protein L4 [Rhodococcus qingshengii BKS 20-40]
Length = 224
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 116/193 (60%), Gaps = 6/193 (3%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++FD P ++H+VV QLA +QGTHSTKT +V G GKKP+RQKGTGRAR
Sbjct: 21 GTVDLPAEIFDAPANIALLHQVVVAQLAAARQGTHSTKTRGDVRGGGKKPYRQKGTGRAR 80
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL---EV 228
G+ R PQF GG T+HGP+PR ++ + KK++ L+ ALS RA ++ V +L +
Sbjct: 81 QGSTRAPQFVGGGTVHGPQPRDYSQRTPKKMKAAALRGALSDRARNERIHVITELVAGQT 140
Query: 229 PSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHD 288
PS TK + + ++ + KK+LL G K + QNL V+ + LN Y +L D
Sbjct: 141 PS--TKGAIAFLGEISDRKKLLLVVGRQDVAAWK-SVQNLEGVHPIAPDQLNTYDVLNAD 197
Query: 289 TLVMSRDAVNKIV 301
+V S +A+N +
Sbjct: 198 DVVFSVEALNAFI 210
>gi|346465399|gb|AEO32544.1| hypothetical protein [Amblyomma maculatum]
Length = 294
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 131/236 (55%), Gaps = 2/236 (0%)
Query: 77 PSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRW 136
P L+ K+ + P + V + +E G + L +VF V R D +H V W
Sbjct: 42 PLPLITKRELAYPSKFTPNREAWVENLDTIESEKLGLIPLLTEVFGVFPRIDTLHWNVNW 101
Query: 137 QLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPK-PRSHA 195
QL ++ +T+T +E G G+KPW QKGTGRARHG++R P ++GG HGP+ PR++
Sbjct: 102 QLYYQKVDWTTTQTRAERRGGGRKPWPQKGTGRARHGSIRSPLWKGGGIAHGPRGPRTYY 161
Query: 196 IKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDG- 254
L R GL ALS + A+ L + + L++P++ +K++ N + VL D
Sbjct: 162 YMLPFFRRVQGLTTALSVKFAQDDLKIVDSLDLPTNDSKYLENLVEERFWGPSVLFVDNT 221
Query: 255 GCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNKIVDRMHTPINR 310
+ E + + + + N++P GLNV+S+L+HDTLV++ AV +I +++ ++R
Sbjct: 222 DYVSENIAIICDEVKHFNIMPVYGLNVFSMLKHDTLVLTLSAVEEIENKLLYQMSR 277
>gi|224477219|ref|YP_002634825.1| 50S ribosomal protein L4 [Staphylococcus carnosus subsp. carnosus
TM300]
gi|254803753|sp|B9DM18.1|RL4_STACT RecName: Full=50S ribosomal protein L4
gi|222421826|emb|CAL28640.1| 50S ribosomal protein L4 [Staphylococcus carnosus subsp. carnosus
TM300]
Length = 207
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 75/189 (39%), Positives = 109/189 (57%), Gaps = 1/189 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ VF + KD+I + Q A +QGTHS K S V G G+KPWRQKGTGRAR
Sbjct: 15 GSVELSDSVFAIEPNKDVIFEAINLQRASLRQGTHSVKNRSAVRGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
GT+R PQ+RGG + GP PRS++ K+ KK+RRL L+ ALS + E V + + +
Sbjct: 75 QGTIRAPQWRGGGIVFGPTPRSYSYKMPKKMRRLALRSALSFKVQENGFTVVDAFGLEAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KTK + +E KKVL+ ++L+ +N+ V + GLNV I D+++
Sbjct: 135 KTKEFTKVLSNLELPKKVLVVT-ESEDVNVELSARNIPGVQITTVTGLNVLDITSADSVL 193
Query: 292 MSRDAVNKI 300
++ A K+
Sbjct: 194 ITEAAAKKV 202
>gi|322796484|gb|EFZ18991.1| hypothetical protein SINV_11616 [Solenopsis invicta]
Length = 287
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 113/203 (55%), Gaps = 3/203 (1%)
Query: 105 NFFNEDK-GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWR 163
N E K G + L ++ R DI+H+ VRWQ R TKT +EV G G+KPW
Sbjct: 64 NTIEEKKLGLVTLHPHIYATAPRIDIVHQNVRWQKMYRWVSYAHTKTRAEVRGGGRKPWP 123
Query: 164 QKGTGRARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
QKGTGRARHG++R P ++GG HGP+ P H L R GL LS + A+ L +
Sbjct: 124 QKGTGRARHGSIRSPLWKGGGIAHGPRSPTPHFYMLPFYTRVAGLTSMLSIKLAQDDLHI 183
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDG-GCIHEKLKLATQNLHYVNVLPSVGLNV 281
++LE+P+ + ++ + VL D + + LAT + +VN++P GLNV
Sbjct: 184 IDELEIPTSEPSYVEQLVEERNWGPSVLFVDSYDIMPPNITLATDKIKHVNLMPVYGLNV 243
Query: 282 YSILQHDTLVMSRDAVNKIVDRM 304
YS+L+H+TLV++ A I +++
Sbjct: 244 YSMLKHNTLVLTEKAARLIEEKL 266
>gi|291544461|emb|CBL17570.1| LSU ribosomal protein L4P [Ruminococcus champanellensis 18P13]
Length = 207
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 109/185 (58%), Gaps = 1/185 (0%)
Query: 116 LAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTL 175
L+ VF + + ++H +V LA ++QGT ST T +EVSG G+KPWRQKGTG AR G++
Sbjct: 19 LSDAVFGITPNEAVMHAMVVNYLANQRQGTQSTLTRTEVSGGGRKPWRQKGTGHARQGSI 78
Query: 176 RGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKF 235
R PQ+ G GPKPR + LNKKVRRL +K ALS++ E ++V + L V S+KTK
Sbjct: 79 RAPQWYHGGVALGPKPRDYRYALNKKVRRLAMKSALSSKVLENNIIVLDALTVDSYKTKT 138
Query: 236 IVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRD 295
IV + K L+ + +K A N+ V LNVY IL +D ++ ++
Sbjct: 139 IVAMLKALNVEGKALIVTAEADKKVIKSAA-NIPGVKTAAVNTLNVYDILNYDKFIVVKN 197
Query: 296 AVNKI 300
AV +I
Sbjct: 198 AVGQI 202
>gi|397670938|ref|YP_006512473.1| 50S ribosomal protein L4 [Propionibacterium propionicum F0230a]
gi|395141018|gb|AFN45125.1| 50S ribosomal protein L4 [Propionibacterium propionicum F0230a]
Length = 235
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 83/195 (42%), Positives = 114/195 (58%), Gaps = 6/195 (3%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G L G++FDV +IH+VV QLA +QGTHSTKT EV G G KPWRQKGTGRAR
Sbjct: 17 GTAELPGEIFDVQTNIPLIHQVVVAQLAAARQGTHSTKTRGEVRGGGSKPWRQKGTGRAR 76
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL---EV 228
HG+ R P + GG T+HGPKPR ++ + KK+ L+ +LS RA +G++ V +L EV
Sbjct: 77 HGSRRSPIWTGGGTVHGPKPRDYSQRTPKKMIVAALRGSLSDRARDGQVFVVSELVSGEV 136
Query: 229 PSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHD 288
PS +T Q+ KKVL+ E L+ +N+ ++VL LN Y +L D
Sbjct: 137 PSTRTAL--ETLEQLGELKKVLVVL-DRFEEVAWLSLRNVPTIHVLAVDQLNAYDVLVAD 193
Query: 289 TLVMSRDAVNKIVDR 303
++V + A+ R
Sbjct: 194 SVVFTSAALAAFTHR 208
>gi|220903935|ref|YP_002479247.1| 50S ribosomal protein L4 [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|254803730|sp|B8IYH3.1|RL4_DESDA RecName: Full=50S ribosomal protein L4
gi|219868234|gb|ACL48569.1| ribosomal protein L4/L1e [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 210
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 118/205 (57%), Gaps = 2/205 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + ++ G + LA DVF++ +R +I++ V R Q+A ++ GTH+ KT + VSG G K
Sbjct: 4 VKVYDQNKQESGEVTLASDVFEIEVRPEILNLVARAQMAAKRAGTHNVKTRAFVSGGGAK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G+ R P +RGG GP PR + K+N KVR L LK+ALS+R A L
Sbjct: 64 PWKQKGTGRARAGSNRSPIWRGGAITFGPSPRDYTFKVNSKVRSLALKMALSSRLAAESL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + + +P KTK + + TK +++ + L + +N+ + + L+
Sbjct: 124 MVVKGIVLPEAKTKHFAKVADTLGLTKALIVAPEE--NADLTRSARNIPGLTLTTVDRLS 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRMH 305
V IL+H LV+ AV + R
Sbjct: 182 VLEILKHKQLVLLEGAVESVQARFE 206
>gi|392944817|ref|ZP_10310459.1| 50S ribosomal protein L4, bacterial/organelle [Frankia sp. QA3]
gi|392288111|gb|EIV94135.1| 50S ribosomal protein L4, bacterial/organelle [Frankia sp. QA3]
Length = 236
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 82/203 (40%), Positives = 117/203 (57%), Gaps = 6/203 (2%)
Query: 110 DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGR 169
D G + L G VFDVP+ +IH+VV QLA +QGTH+TKT EV G G+KP+RQKGTGR
Sbjct: 27 DGGSVELPGGVFDVPLNVPLIHQVVVAQLAAARQGTHATKTRGEVRGGGRKPYRQKGTGR 86
Query: 170 ARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL--- 226
AR G+LR PQF GG +HGP PR + + KK++ L+ ALS RA ++ V L
Sbjct: 87 ARQGSLRAPQFTGGGIVHGPTPRKYDQRTPKKMKAAALRGALSDRARNNRVHVVSSLVTG 146
Query: 227 EVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQ 286
E P+ TK V + +T++VL+ K + +N+ V++L LN Y +L
Sbjct: 147 ETPA--TKAAVTALRAIADTRRVLVVASRADELTWK-SLRNVAAVHLLDPGQLNTYDVLV 203
Query: 287 HDTLVMSRDAVNKIVDRMHTPIN 309
D +V + +A+ + R P +
Sbjct: 204 SDDVVFTEEALAAFLARDSRPAS 226
>gi|441204845|ref|ZP_20972301.1| 50S ribosomal protein L4 [Mycobacterium smegmatis MKD8]
gi|440629311|gb|ELQ91101.1| 50S ribosomal protein L4 [Mycobacterium smegmatis MKD8]
Length = 209
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 82/191 (42%), Positives = 114/191 (59%), Gaps = 2/191 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++FDV ++H+VV QLA ++QGTHSTKT EVSG GKKP+RQKGTGRAR
Sbjct: 10 GSVELPAELFDVEPNIALMHQVVTAQLAAKRQGTHSTKTRGEVSGGGKKPYRQKGTGRAR 69
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL-LVFEDLEVPS 230
G+ R PQF GG T+HGPKPR ++ + KK+ L+ ALS RA ++ V E +E +
Sbjct: 70 QGSTRAPQFTGGGTVHGPKPRDYSQRTPKKMIAAALRGALSDRARNDRIHAVTELVEGQT 129
Query: 231 HKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTL 290
TK + + KKVL+ G K + +NL V+V+ LN Y +L D +
Sbjct: 130 PSTKSAKTFLGTLTENKKVLVVIGRTDEVGAK-SVRNLPGVHVISPDQLNTYDVLNADDV 188
Query: 291 VMSRDAVNKIV 301
V S +A+N +
Sbjct: 189 VFSVEALNAYI 199
>gi|363891264|ref|ZP_09318443.1| 50S ribosomal protein L4 [Eubacteriaceae bacterium CM2]
gi|402837871|ref|ZP_10886386.1| 50S ribosomal protein L4 [Eubacteriaceae bacterium OBRC8]
gi|361965321|gb|EHL18303.1| 50S ribosomal protein L4 [Eubacteriaceae bacterium CM2]
gi|402274302|gb|EJU23486.1| 50S ribosomal protein L4 [Eubacteriaceae bacterium OBRC8]
Length = 208
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 71/184 (38%), Positives = 110/184 (59%)
Query: 114 MVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHG 173
M ++ D+F V + + ++ V+ LA R+QGT S KT +EV G G+KPWRQKGTGRAR G
Sbjct: 17 MEISEDIFAVEVNEHCVYEAVKNHLANRRQGTQSAKTRAEVRGGGRKPWRQKGTGRARQG 76
Query: 174 TLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKT 233
+ R PQ+ GG + PKPR ++ K+NKKV+R+ LK L+ + KL+V +L + KT
Sbjct: 77 STRSPQWIGGGVVFAPKPRDYSYKINKKVKRIALKSVLTDKVNNQKLIVLNELTMNEPKT 136
Query: 234 KFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMS 293
K ++ K L + + + +N++ V+V + +N Y I+ H+ LVM+
Sbjct: 137 KVFAQTMKNLKIDGKKALFVTKQNDQNVVRSGRNIYGVSVAFADVINTYDIMNHEVLVMT 196
Query: 294 RDAV 297
+DAV
Sbjct: 197 KDAV 200
>gi|291537925|emb|CBL11036.1| LSU ribosomal protein L4P [Roseburia intestinalis XB6B4]
Length = 198
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 74/189 (39%), Positives = 113/189 (59%), Gaps = 2/189 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L VF V + + ++H V QLA +QGT KT SEV G G+KPWRQKGTG AR
Sbjct: 7 GSLELNDAVFGVEVNEHLVHMAVLQQLANNRQGTQKAKTRSEVRGGGRKPWRQKGTGHAR 66
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G+ R PQ+ G + P PR ++ KLNKK +R LK AL++R E K +V ++L++ S
Sbjct: 67 QGSTRAPQWTHGGVVFAPVPRDYSFKLNKKEKRAALKSALTSRVNESKFIVVDELKLDSI 126
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KTK V N ++ K +++ + + + + N+ V + LNV+ +L++DT+V
Sbjct: 127 KTKNFVQVLNNLKVEKALVVLND--MDTNVIKSASNVPTVKTAQTNELNVFDVLKYDTVV 184
Query: 292 MSRDAVNKI 300
+++DAV I
Sbjct: 185 VTKDAVKTI 193
>gi|453075557|ref|ZP_21978343.1| 50S ribosomal protein L4 [Rhodococcus triatomae BKS 15-14]
gi|452762983|gb|EME21270.1| 50S ribosomal protein L4 [Rhodococcus triatomae BKS 15-14]
Length = 223
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 84/206 (40%), Positives = 117/206 (56%), Gaps = 6/206 (2%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
L + V N G + L ++FD ++H+VV QLA +QGTHSTKT EV G G
Sbjct: 8 LTLDVRNADGGTNGTVDLPAEIFDAQANIALMHQVVVAQLAAARQGTHSTKTRGEVRGGG 67
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KKP+RQKGTGRAR G+ R PQF GG T+HGPKPR ++ + KK++ L+ ALS RA
Sbjct: 68 KKPYRQKGTGRARQGSTRAPQFAGGGTVHGPKPRDYSQRTPKKMKAAALRGALSDRARNE 127
Query: 219 KLLVFEDL---EVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++ V +L + PS TK + ++ + KK LL G K + QNL V+ +
Sbjct: 128 RIHVITELVAGQTPS--TKSARKFLGEISDRKKFLLVVGREDVAAWK-SVQNLEGVHPIA 184
Query: 276 SVGLNVYSILQHDTLVMSRDAVNKIV 301
LN Y +L D +V S +A+N +
Sbjct: 185 PDQLNTYDVLNSDEVVFSVEALNAFI 210
>gi|340625722|ref|YP_004744174.1| putative 50S ribosomal protein L4 RPLD [Mycobacterium canettii CIPT
140010059]
gi|433625795|ref|YP_007259424.1| Putative 50S ribosomal protein L4 RplD [Mycobacterium canettii CIPT
140060008]
gi|433629786|ref|YP_007263414.1| Putative 50S ribosomal protein L4 RplD [Mycobacterium canettii CIPT
140070010]
gi|433633735|ref|YP_007267362.1| Putative 50S ribosomal protein L4 RplD [Mycobacterium canettii CIPT
140070017]
gi|433640825|ref|YP_007286584.1| Putative 50S ribosomal protein L4 RplD [Mycobacterium canettii CIPT
140070008]
gi|340003912|emb|CCC43046.1| putative 50S ribosomal protein L4 RPLD [Mycobacterium canettii CIPT
140010059]
gi|432153401|emb|CCK50623.1| Putative 50S ribosomal protein L4 RplD [Mycobacterium canettii CIPT
140060008]
gi|432157373|emb|CCK54651.1| Putative 50S ribosomal protein L4 RplD [Mycobacterium canettii CIPT
140070008]
gi|432161379|emb|CCK58721.1| Putative 50S ribosomal protein L4 RplD [Mycobacterium canettii CIPT
140070010]
gi|432165328|emb|CCK62803.1| Putative 50S ribosomal protein L4 RplD [Mycobacterium canettii CIPT
140070017]
Length = 223
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 114/191 (59%), Gaps = 2/191 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++FDVP ++H+VV Q A +QGTHSTKT EVSG G+KP+RQKGTGRAR
Sbjct: 22 GAIELPAELFDVPANIALMHQVVTAQRAAARQGTHSTKTRGEVSGGGRKPYRQKGTGRAR 81
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL-LVFEDLEVPS 230
G+ R PQF GG +HGPKPR ++ + KK+ L+ ALS RA G++ V E +E +
Sbjct: 82 QGSTRAPQFTGGGVVHGPKPRDYSQRTPKKMIAAALRGALSDRARNGRIHAVTELVEGQN 141
Query: 231 HKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTL 290
TK + + K+VL+ G K + +NL V++L LN Y +L+ D +
Sbjct: 142 PSTKSARAFLASLTERKQVLVVIGRSDEAGAK-SVRNLPGVHILAPDQLNTYDVLRADDV 200
Query: 291 VMSRDAVNKIV 301
V S +A+N +
Sbjct: 201 VFSVEALNAYI 211
>gi|118470088|ref|YP_885820.1| 50S ribosomal protein L4 [Mycobacterium smegmatis str. MC2 155]
gi|399985821|ref|YP_006566169.1| 50S ribosomal protein L4 [Mycobacterium smegmatis str. MC2 155]
gi|166234688|sp|A0QSD2.1|RL4_MYCS2 RecName: Full=50S ribosomal protein L4
gi|118171375|gb|ABK72271.1| ribosomal protein L4/L1 family protein [Mycobacterium smegmatis
str. MC2 155]
gi|399230381|gb|AFP37874.1| 50S ribosomal protein L4 [Mycobacterium smegmatis str. MC2 155]
Length = 215
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 82/191 (42%), Positives = 114/191 (59%), Gaps = 2/191 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++FDV ++H+VV QLA ++QGTHSTKT EVSG GKKP+RQKGTGRAR
Sbjct: 16 GSVELPAELFDVEPNIALMHQVVTAQLAAKRQGTHSTKTRGEVSGGGKKPYRQKGTGRAR 75
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL-LVFEDLEVPS 230
G+ R PQF GG T+HGPKPR ++ + KK+ L+ ALS RA ++ V E +E +
Sbjct: 76 QGSTRAPQFTGGGTVHGPKPRDYSQRTPKKMIAAALRGALSDRARNDRIHAVTELVEGQT 135
Query: 231 HKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTL 290
TK + + KKVL+ G K + +NL V+V+ LN Y +L D +
Sbjct: 136 PSTKSAKTFLGTLTENKKVLVVIGRTDEVGAK-SVRNLPGVHVISPDQLNTYDVLNADDV 194
Query: 291 VMSRDAVNKIV 301
V S +A+N +
Sbjct: 195 VFSVEALNAYI 205
>gi|414159413|ref|ZP_11415699.1| 50S ribosomal protein L4 [Staphylococcus simulans ACS-120-V-Sch1]
gi|410884415|gb|EKS32241.1| 50S ribosomal protein L4 [Staphylococcus simulans ACS-120-V-Sch1]
Length = 207
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 74/189 (39%), Positives = 110/189 (58%), Gaps = 1/189 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ VF + KD++ + Q A +QGTHS K S V G G+KPWRQKGTGRAR
Sbjct: 15 GSVELSDAVFAIEPNKDVLFEAINLQRASLRQGTHSVKNRSAVRGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
GT+R PQ+RGG + GP PRS+A K+ KK+RRL L+ ALS + E + + + + +
Sbjct: 75 QGTIRAPQWRGGGIVFGPTPRSYAYKMPKKMRRLALRSALSFKVQENEFKIIDAFGLEAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KTK + +E KKVL+ ++L+ +N+ V + GLNV I D+++
Sbjct: 135 KTKEFTKVLSNLELPKKVLVVT-ESEDVNVELSARNIPGVQITTVTGLNVLDITSADSVL 193
Query: 292 MSRDAVNKI 300
++ A K+
Sbjct: 194 ITEAAAKKV 202
>gi|160947699|ref|ZP_02094866.1| hypothetical protein PEPMIC_01634 [Parvimonas micra ATCC 33270]
gi|158446833|gb|EDP23828.1| 50S ribosomal protein L4 [Parvimonas micra ATCC 33270]
Length = 207
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 121/205 (59%), Gaps = 8/205 (3%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P N +N E G + L +F + + + +++ VV+ LA R+QGT S KT +EV G
Sbjct: 1 MPKVNVYNQLGEVVGDIELNEAIFGIEVNEHVVYEVVKNHLANRRQGTQSAKTRAEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ++GG + PKPRS+ + KKVRRL +K LS++ E
Sbjct: 61 GRKPWRQKGTGRARQGSIRAPQWKGGGVVFAPKPRSYRYSVPKKVRRLAMKSVLSSKVLE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQ--MENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
G+L + + L + + TK +E ++L +G + K + NL V +
Sbjct: 121 GELRILDALTIDAFSTKKAKEILKNLSLETKTMIVLPEGNDMIVK---SFANLPKVETVV 177
Query: 276 SVGLNVYSILQHDTLVMSRDAVNKI 300
+NVY +++ D LV+ +DA++KI
Sbjct: 178 VDYMNVYDLMRFDNLVIVKDALSKI 202
>gi|116495946|ref|YP_807680.1| 50S ribosomal protein L4 [Lactobacillus casei ATCC 334]
gi|122262654|sp|Q034Y4.1|RL4_LACC3 RecName: Full=50S ribosomal protein L4
gi|116106096|gb|ABJ71238.1| LSU ribosomal protein L4P [Lactobacillus casei ATCC 334]
Length = 207
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 116/193 (60%), Gaps = 5/193 (2%)
Query: 110 DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGR 169
+ G + L ++ V ++++ V Q +QGTH+ K S VSG G+KPWRQKGTGR
Sbjct: 13 ENGKVELNDAIWAVEPNENVVFDAVVMQRDSLRQGTHAVKNRSAVSGGGRKPWRQKGTGR 72
Query: 170 ARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVP 229
AR G++R PQ+RGG + GP PRS+A KL KKVRRL +K LS + + L+V + L
Sbjct: 73 ARQGSIRSPQWRGGGIVFGPTPRSYAYKLPKKVRRLAIKSVLSQKVLDSDLVVVDGLNFD 132
Query: 230 SHKTKFIVNYYNQMENTKK--VLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQH 287
+ KTK + ++ + K V+L DG + K A +NL V V+P+ G+NV ++ +
Sbjct: 133 APKTKAFATVLDGLKVSDKALVVLEDGNEVAAK---AARNLPNVKVVPAEGINVLDVVDY 189
Query: 288 DTLVMSRDAVNKI 300
L++++ A+ KI
Sbjct: 190 KKLILTQSALQKI 202
>gi|407982446|ref|ZP_11163122.1| 50S ribosomal protein L4 [Mycobacterium hassiacum DSM 44199]
gi|407375958|gb|EKF24898.1| 50S ribosomal protein L4 [Mycobacterium hassiacum DSM 44199]
Length = 211
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 117/193 (60%), Gaps = 2/193 (1%)
Query: 111 KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRA 170
+G + L ++FDV ++H+VV QLA +QGTHSTKT EVSG G+KP+RQKGTGRA
Sbjct: 9 EGSVELPAELFDVEPNIPLMHQVVTAQLAAARQGTHSTKTRGEVSGGGRKPYRQKGTGRA 68
Query: 171 RHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL-LVFEDLEVP 229
R G+ R PQF GG T+HGPKPR ++ + KK+ L+ ALS RA G++ V E +E
Sbjct: 69 RQGSTRAPQFTGGGTVHGPKPRDYSQRTPKKMIAAALRGALSDRARNGRIHAVTELVEGQ 128
Query: 230 SHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDT 289
+ TK + + + KVL+ G K + +NL V+V+ LN Y +L+ D
Sbjct: 129 TPSTKKAKAFLATLTDRPKVLVVIGRADETGAK-SVRNLPGVHVIAPDQLNTYDVLKADD 187
Query: 290 LVMSRDAVNKIVD 302
+V S +A+N ++
Sbjct: 188 VVFSVEALNAYIE 200
>gi|410867095|ref|YP_006981706.1| 50S ribosomal protein L4 [Propionibacterium acidipropionici ATCC
4875]
gi|410823736|gb|AFV90351.1| 50S ribosomal protein L4 [Propionibacterium acidipropionici ATCC
4875]
Length = 297
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 122/208 (58%), Gaps = 2/208 (0%)
Query: 95 LHQDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEV 154
+ ++ I V + G + L GDVFDV +IH+VV Q A +QGTHSTKT EV
Sbjct: 1 MSENKTIDVLTAKGKKSGSVELPGDVFDVATNVPLIHQVVVAQQAAARQGTHSTKTRGEV 60
Query: 155 SGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSAR 214
+G GKKPWRQKGTGRAR G+ R PQ+ GG T+ GP+PRS+A + KK+ L+ ALS R
Sbjct: 61 AGGGKKPWRQKGTGRARQGSTRSPQWVGGGTVFGPQPRSYAQRTPKKMVAAALRGALSDR 120
Query: 215 AAEGKLLVFEDL-EVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNV 273
A +G++ V L E TK + + + + KKVL+ E L+ +NL V+V
Sbjct: 121 ARDGQIFVLASLVESDKPSTKAAKSVLSNLGDLKKVLVVLDRS-DEISWLSVRNLAEVHV 179
Query: 274 LPSVGLNVYSILQHDTLVMSRDAVNKIV 301
+ + LN Y +L+ D LV +R A+ V
Sbjct: 180 IAADQLNAYDVLKADQLVFTRAALAAFV 207
>gi|357058918|ref|ZP_09119764.1| 50S ribosomal protein L4/L1 [Selenomonas infelix ATCC 43532]
gi|355373264|gb|EHG20585.1| 50S ribosomal protein L4/L1 [Selenomonas infelix ATCC 43532]
Length = 207
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 117/201 (58%), Gaps = 3/201 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + + G + L+ + F+V + ++H+ V QLA ++ GTH+TKT V G G+K
Sbjct: 4 VAVYDMSHNQVGEISLSDEFFNVEMNAGLLHQAVVLQLASQRLGTHATKTRGLVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G+ R P + GG T+ GP PR + + +K RRL LK ALS + G
Sbjct: 64 PWRQKGTGRARAGSTRSPLWVGGGTVFGPHPRKYGFTMPRKQRRLALKCALSDKVRTGDF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQME-NTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGL 279
+V + L+ + KTK V + N K + + ++ ++ +T N+ V + + G+
Sbjct: 124 IVLDQLDFEAPKTKAAVKLLSDFGVNAKSLFITADEAVN--VERSTSNIPGVKAITARGI 181
Query: 280 NVYSILQHDTLVMSRDAVNKI 300
NVY IL HD L +++DA+ +I
Sbjct: 182 NVYDILHHDKLFITKDAITRI 202
>gi|404330450|ref|ZP_10970898.1| 50S ribosomal protein L4 [Sporolactobacillus vineae DSM 21990 =
SL153]
Length = 207
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 121/203 (59%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNE---DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P F++ + G + L V+ + + ++++ V Q A ++QGTH+ K S V G
Sbjct: 1 MPKLTVFDQKGTEVGNVDLPDSVYGIEPNEHVLYQAVVMQQASQRQGTHAVKNRSAVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+ GG T+ GP PRS+A KL KKVRRL ++ ALS +
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWVGGGTVFGPTPRSYAYKLPKKVRRLAIRSALSDKVGT 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
L+V ++L++ + KTK V + ++K L + L+ +N+ V VL S
Sbjct: 121 SDLIVLDNLKLDAPKTKEFVTVLKNLSVSEKALFVTNEA-DPAVALSARNIPGVKVLTSE 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
+NV ++ H+ L+++++A K+
Sbjct: 180 EVNVLDVVAHNKLIVTKEAAEKL 202
>gi|395238752|ref|ZP_10416661.1| 50S ribosomal protein L4 [Lactobacillus gigeriorum CRBIP 24.85]
gi|394477273|emb|CCI86638.1| 50S ribosomal protein L4 [Lactobacillus gigeriorum CRBIP 24.85]
Length = 205
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 75/189 (39%), Positives = 111/189 (58%), Gaps = 3/189 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L VF + + ++ + Q A ++QGT K S V G GKKPWRQKGTGRAR
Sbjct: 15 GEITLNDKVFGIEPNESVVFDAIIRQRAGKRQGTSKVKNRSAVRGGGKKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+RGG + GP PRS+A + +K RRL +K LS + A+ L+V + L + +
Sbjct: 75 QGSIRAPQWRGGGIVFGPTPRSYAYSMPRKQRRLAIKSVLSQKLADEDLIVLDQLTMAAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KTK V N + KVL+ + ++L+ +NL V V+P GLNV + + L+
Sbjct: 135 KTKEFVALLNGLNVEGKVLVVSD---DKNVQLSARNLTKVKVVPVNGLNVEDAVNYQKLI 191
Query: 292 MSRDAVNKI 300
+++DAV KI
Sbjct: 192 LTQDAVKKI 200
>gi|374992980|ref|YP_004968479.1| 50S ribosomal protein L4 [Desulfosporosinus orientis DSM 765]
gi|357211346|gb|AET65964.1| 50S ribosomal protein L4, bacterial/organelle [Desulfosporosinus
orientis DSM 765]
Length = 207
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 112/199 (56%), Gaps = 1/199 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + L DVF + ++H V QLA ++GT S EV G G+K
Sbjct: 4 VQVLNMEGAAVGEIELNEDVFGITPNVHVLHSAVVSQLAGERRGTQSALLRGEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G+ R P ++GG + PKPR + KL KKVRRL L ALS++ + +L
Sbjct: 64 PWRQKGTGRARSGSSRSPLWKGGGVIFAPKPRKYGFKLPKKVRRLALYSALSSKVIDQQL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + L + KT+ +V + KK ++ + E + + +N+ V + G+N
Sbjct: 124 IVLDALSLSEAKTREMVKVLKALHVEKKAMIVM-DEVDEAVLRSARNIEGVKAMDVAGMN 182
Query: 281 VYSILQHDTLVMSRDAVNK 299
V+ +L HDTLVM++ AV K
Sbjct: 183 VFDLLNHDTLVMTKAAVTK 201
>gi|420157782|ref|ZP_14664610.1| 50S ribosomal protein L4 [Clostridium sp. MSTE9]
gi|394755610|gb|EJF38809.1| 50S ribosomal protein L4 [Clostridium sp. MSTE9]
Length = 207
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 117/200 (58%), Gaps = 1/200 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + ++ G + L+ VF + ++H +V+ LA ++QGT S T SEV+G G+K
Sbjct: 4 VAVLDMAGKEVGQIELSEAVFGIEPNVAVMHELVKNYLANQRQGTQSALTRSEVAGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G++R PQ+R G + PKPR + +NKKVRRL +K A S++ + ++
Sbjct: 64 PWRQKGTGHARQGSIRAPQWRHGGVVFAPKPRDYRYTVNKKVRRLAMKSAFSSKVIDNEI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + + + +KTK IV+ + KK L+ ++K+ + NL V LN
Sbjct: 124 VVLDQIAMDEYKTKVIVSMLQALGAEKKALIVLPEE-NKKVIASAANLQGVKTATVNTLN 182
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY IL D ++ +DAV KI
Sbjct: 183 VYDILNADKFIVLKDAVAKI 202
>gi|363893533|ref|ZP_09320631.1| 50S ribosomal protein L4/L1 [Eubacteriaceae bacterium ACC19a]
gi|361963837|gb|EHL16903.1| 50S ribosomal protein L4/L1 [Eubacteriaceae bacterium ACC19a]
Length = 208
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 72/184 (39%), Positives = 110/184 (59%)
Query: 114 MVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHG 173
M ++ ++F V I + ++ V+ LA R+QGT S KT +EV G GKKPWRQKGTGRAR G
Sbjct: 17 MEISEEIFAVEINEHCVYETVKNHLANRRQGTQSAKTRAEVRGGGKKPWRQKGTGRARQG 76
Query: 174 TLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKT 233
+ R PQ+ GG + PKPR ++ K+NKKV+R+ LK L+ + KL+V +L + KT
Sbjct: 77 STRSPQWIGGGVVFAPKPRDYSYKINKKVKRIALKSVLTDKVNNQKLIVLNELTMNEPKT 136
Query: 234 KFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMS 293
K ++ K L + + + +N++ V+V + +N Y I+ H+ LVM+
Sbjct: 137 KVFAQTMKNLKIDGKKALFVTKQNDQNVVRSGRNIYGVSVAFADVINTYDIINHEVLVMT 196
Query: 294 RDAV 297
+DAV
Sbjct: 197 KDAV 200
>gi|311029050|ref|ZP_07707140.1| 50S ribosomal protein L4 [Bacillus sp. m3-13]
Length = 207
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 121/203 (59%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNE---DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N+ + G + LA VF + ++ + Q A +QGT K SEV+G
Sbjct: 1 MPKVALYNQAGANVGEVELADAVFGIEPNNSVLFDAIVMQRASLRQGTAKVKGRSEVAGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ KL KKVRRL +K ALS++ E
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSYKLPKKVRRLAIKSALSSKVLE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+LLV E L + KTK + + +E +K L+ E + L+ +N+ V V+
Sbjct: 121 NELLVLEGLAFDAPKTKEMTSVLKGLEINRKALIVTADA-DENVALSARNIPGVTVVTVT 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
G+NV ++ HD ++ ++DAV K+
Sbjct: 180 GVNVLDVVNHDKVIFTKDAVQKL 202
>gi|384106917|ref|ZP_10007821.1| 50S ribosomal protein L4 [Rhodococcus imtechensis RKJ300]
gi|383833368|gb|EID72831.1| 50S ribosomal protein L4 [Rhodococcus imtechensis RKJ300]
Length = 229
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 115/193 (59%), Gaps = 6/193 (3%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++FD P ++H+VV QLA +QGTH+TKT EV G GKKP+RQKGTGRAR
Sbjct: 24 GTVDLPPEIFDAPANIALLHQVVVAQLAAARQGTHATKTRGEVRGGGKKPYRQKGTGRAR 83
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL---EV 228
G+ R PQF GG T+HGP+PR ++ + KK++ L+ ALS RA ++ V +L +
Sbjct: 84 QGSTRAPQFAGGGTVHGPQPRDYSQRTPKKMKAAALRGALSDRARNERIHVITELVAGQT 143
Query: 229 PSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHD 288
PS TK + ++ + KKVLL G K + QNL V+ + LN Y +L D
Sbjct: 144 PS--TKSARTFLGEISDRKKVLLVVGREDIAAWK-SVQNLDGVHPIAPDQLNTYDVLNSD 200
Query: 289 TLVMSRDAVNKIV 301
+V S +A+N +
Sbjct: 201 DVVFSVEALNAFI 213
>gi|110180284|gb|ABG54385.1| 23S ribosomal protein L4 [Brucella ceti]
Length = 188
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 112/204 (54%), Gaps = 19/204 (9%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ +T +D G + L ++F + R DI+ RVVRWQLA+RQQG+H
Sbjct: 3 LTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSH-------------- 48
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
K GRARH + R PQFRGG HGP R+H L KKV LGL+ ALSA+A L
Sbjct: 49 ----KAQGRARHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVLALGLRHALSAKAKASDL 104
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
++ +DL KTK +V+ + ++ + LL G I + A N+ ++VLP G+N
Sbjct: 105 IIIDDLASADAKTKQLVSQFAKL-GLENALLIGGAEIDANFQRAASNIPNIDVLPVQGIN 163
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL+ LV+S+ AV + +R
Sbjct: 164 VYDILRRGKLVLSKAAVEALEERF 187
>gi|158520726|ref|YP_001528596.1| 50S ribosomal protein L4 [Desulfococcus oleovorans Hxd3]
gi|226730653|sp|A8ZV58.1|RL4_DESOH RecName: Full=50S ribosomal protein L4
gi|158509552|gb|ABW66519.1| ribosomal protein L4/L1e [Desulfococcus oleovorans Hxd3]
Length = 205
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 116/205 (56%), Gaps = 3/205 (1%)
Query: 100 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
V+ + N E L +FDV ++ ++H VV+ QLA+R+ GT STK S+V+G+
Sbjct: 3 VVDIKNMNGETVSQAELPDSIFDVEVKSSVLHEVVKMQLARRRSGTASTKGRSDVAGSRA 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
K +RQKGTGRAR G ++ P +GG + GP PRS + KKVR+L LK+AL+++ +
Sbjct: 63 KLFRQKGTGRARRGDVKSPLLKGGGVVFGPHPRSFDYSVPKKVRKLALKMALTSKLRDNT 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGL 279
L V + KTK V N + +++ DG E L+ + +N+ V VL GL
Sbjct: 123 LTVVDQFRFDRIKTKDFVGAINALGAANALVISDG---SETLEKSARNVPKVKVLKCEGL 179
Query: 280 NVYSILQHDTLVMSRDAVNKIVDRM 304
NVY IL++ LV+ A+ I R+
Sbjct: 180 NVYDILKYKNLVLPEAAIKMIEGRL 204
>gi|7674307|sp|Q9ZI49.1|RL4_AQUPY RecName: Full=50S ribosomal protein L4
gi|4165866|gb|AAD08786.1| ribosomal protein L4 [Aquifex pyrophilus]
Length = 199
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 116/189 (61%), Gaps = 1/189 (0%)
Query: 119 DVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGP 178
DVF+V ++K ++ VV+WQLAKR+QGTHSTKT EV+ +G+K QKGTG ARHG
Sbjct: 11 DVFNVKVKKHVLWEVVKWQLAKRRQGTHSTKTRGEVAYSGRKILPQKGTGNARHGERGVN 70
Query: 179 QFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH-KTKFIV 237
F GG HGPKPR + L KKVR+LGLK+ALS +A ++ +++++ KTK V
Sbjct: 71 IFVGGGVAHGPKPRDYEYPLPKKVRKLGLKMALSDKAQNDAIMFVDNIDLGEQPKTKKAV 130
Query: 238 NYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAV 297
+ + K+ LL +E L + +NL V VL GLNVY +L + LV+ ++ +
Sbjct: 131 EFLKNLGVDKETLLIVIPEKNEVLYKSFRNLQNVRVLLPEGLNVYDVLWANKLVIHKECL 190
Query: 298 NKIVDRMHT 306
++I ++
Sbjct: 191 DRIYKKVEA 199
>gi|242371895|ref|ZP_04817469.1| 50S ribosomal protein L4 [Staphylococcus epidermidis M23864:W1]
gi|242350402|gb|EES42003.1| 50S ribosomal protein L4 [Staphylococcus epidermidis M23864:W1]
Length = 207
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 76/189 (40%), Positives = 108/189 (57%), Gaps = 1/189 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ VF + ++ + Q A +QGTHS K S V G G+KPWRQKGTGRAR
Sbjct: 15 GSVELSDAVFAIEPNNSVLFEAINLQRASLRQGTHSVKNRSAVRGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
GT+R PQ+RGG + GP PRS++ K+ KK+RRL L+ ALS + E V + +
Sbjct: 75 QGTIRAPQWRGGGIVFGPTPRSYSYKMPKKMRRLALRSALSFKVQEKGFTVVDTFGFDAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KTK N +E KKVL+ G ++L+ +N+ V V + GLNV I D++V
Sbjct: 135 KTKEFKNVLTTLEQPKKVLVVTEGE-DVNVELSARNIPGVQVTTAQGLNVLDITSADSVV 193
Query: 292 MSRDAVNKI 300
++ A K+
Sbjct: 194 ITEAAAKKV 202
>gi|404416724|ref|ZP_10998539.1| 50S ribosomal protein L4 [Staphylococcus arlettae CVD059]
gi|403490928|gb|EJY96458.1| 50S ribosomal protein L4 [Staphylococcus arlettae CVD059]
Length = 207
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 76/189 (40%), Positives = 108/189 (57%), Gaps = 1/189 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L VF + KD++ + Q A +QGTH+ K S V G G+KPWRQKGTGRAR
Sbjct: 15 GSVELNDAVFAIEPNKDVLFEAITLQRASLRQGTHAVKNRSAVRGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
GT+R PQ+RGG + GP PRS+A K+ KK+RRL L+ ALS + E L V + + +
Sbjct: 75 QGTIRAPQWRGGGIVFGPTPRSYAYKMPKKMRRLALRSALSYKVQENALTVVDAINFEAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KTK +E KKVL+ + L+ +N+ V V + GLNV + D++V
Sbjct: 135 KTKEFKTVLANLEQPKKVLVVT-ESEDVNVALSARNIPGVQVSTAQGLNVLDLTSADSVV 193
Query: 292 MSRDAVNKI 300
++ A K+
Sbjct: 194 ITEAAAKKV 202
>gi|410582520|ref|ZP_11319626.1| 50S ribosomal protein L4, bacterial/organelle [Thermaerobacter
subterraneus DSM 13965]
gi|410505340|gb|EKP94849.1| 50S ribosomal protein L4, bacterial/organelle [Thermaerobacter
subterraneus DSM 13965]
Length = 212
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 121/202 (59%), Gaps = 3/202 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N E G + L+ VF P+R+ ++H+ V LA +++GT +TKT VSG G+K
Sbjct: 4 VAVYNTQGERVGEIELSDAVFGAPVREALMHQAVVRYLANQRRGTAATKTRGMVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+R G + GP+PR + L KK RR L+ ALSA+ A+G+L
Sbjct: 64 PWRQKGTGRARQGSIRAPQWRKGGIVFGPQPRDYTQDLPKKARRAALRSALSAKVADGEL 123
Query: 221 LVFE---DLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+V E DL + +T+ + +++ K L ++ L L+ +NL +
Sbjct: 124 IVLEGLDDLGLERPRTREMAALIRRLDLEGKRPLFVLAEPNKTLYLSVRNLPGADTETVD 183
Query: 278 GLNVYSILQHDTLVMSRDAVNK 299
LNVY +L+H +V++R+AV +
Sbjct: 184 RLNVYQVLRHGHVVLAREAVER 205
>gi|116513053|ref|YP_811960.1| 50S ribosomal protein L4 [Lactococcus lactis subsp. cremoris SK11]
gi|385839408|ref|YP_005877038.1| 50S ribosomal protein L4 [Lactococcus lactis subsp. cremoris A76]
gi|123125252|sp|Q02W25.1|RL4_LACLS RecName: Full=50S ribosomal protein L4
gi|116108707|gb|ABJ73847.1| LSU ribosomal protein L4P [Lactococcus lactis subsp. cremoris SK11]
gi|358750636|gb|AEU41615.1| LSU ribosomal protein L4p (L1e) [Lactococcus lactis subsp. cremoris
A76]
Length = 208
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 115/199 (57%), Gaps = 3/199 (1%)
Query: 105 NFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ F +D G + L VF + + ++ VV Q A +QGTH+ K S VSG GKKP
Sbjct: 5 SLFKQDGSQAGEVTLNDSVFGIEPNESVVFDVVISQRASLRQGTHAHKNRSAVSGGGKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
WRQKGTGRAR G+ R PQ+RGG T+ GP PRS+A KL +KVR+L LK S + A+GKL+
Sbjct: 65 WRQKGTGRARQGSTRSPQWRGGGTVFGPNPRSYAYKLPQKVRQLALKSVYSTKVADGKLI 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNV 281
+ L+ + KT + + +KVL+ +E +L+ +NL V V + +V
Sbjct: 125 AVDTLDFAAPKTAEFAKVISALSIERKVLVVLPNEGNEFAELSARNLENVKVTTANSASV 184
Query: 282 YSILQHDTLVMSRDAVNKI 300
I+ D L++ + A+ +I
Sbjct: 185 LDIVSADKLLVVQSALTQI 203
>gi|335046489|ref|ZP_08539512.1| 50S ribosomal protein L4 [Oribacterium sp. oral taxon 108 str.
F0425]
gi|333760275|gb|EGL37832.1| 50S ribosomal protein L4 [Oribacterium sp. oral taxon 108 str.
F0425]
Length = 206
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 113/200 (56%), Gaps = 2/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G M L +F P+ + ++H V QLA ++QGT T SEVSG G+K
Sbjct: 4 VSVFNMQGKEVGKMDLNDAIFAAPVHEHLLHLAVVAQLANKRQGTQKALTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G++R PQ++GG + P PR + +NKK +R LK ALS AE KL
Sbjct: 64 PWRQKGTGHARQGSIRAPQWKGGGVVFAPTPRDYTTTMNKKEKRAALKAALSNAVAENKL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V +++ KTK N N + K +L D + L+ +N+ V LN
Sbjct: 124 IVVDEIRFDEIKTKNFQNMLNALHVQKAFVLLDEN--DKNTVLSARNIQDVKTAQVNELN 181
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY +L++ T++ ++ A+ K+
Sbjct: 182 VYDVLRYGTVLATKAALLKV 201
>gi|297582451|ref|YP_003698231.1| 50S ribosomal protein L4/L1e [Bacillus selenitireducens MLS10]
gi|297140908|gb|ADH97665.1| ribosomal protein L4/L1e [Bacillus selenitireducens MLS10]
Length = 207
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 117/203 (57%), Gaps = 4/203 (1%)
Query: 101 IPVTNFFNE---DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P N +N+ G + L VF + + +++ + Q A +QGTH+ K S+V G
Sbjct: 1 MPKVNLYNQTGSQAGDIELNDAVFGIEPNESVVYDAIIMQQASMRQGTHAVKGRSDVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRARHGT R P + GG + GP PRS+A + KK RRL LK ALS++ E
Sbjct: 61 GRKPWRQKGTGRARHGTNRSPIWVGGGVVFGPTPRSYAYNMPKKQRRLALKSALSSKVNE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+ V E L + KTK + + KKVL+ + + L+ +NL V + +
Sbjct: 121 DAIYVMEGLSFDAPKTKEMKKVLEALSAGKKVLVVTADY-EDNVALSARNLPNVKFVTAE 179
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
G+NV ++ ++LV+++DAV ++
Sbjct: 180 GVNVLDLVNFESLVITQDAVKQV 202
>gi|414075115|ref|YP_007000332.1| 50S ribosomal protein L4 [Lactococcus lactis subsp. cremoris
UC509.9]
gi|413975035|gb|AFW92499.1| 50S ribosomal protein L4 [Lactococcus lactis subsp. cremoris
UC509.9]
Length = 208
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 115/199 (57%), Gaps = 3/199 (1%)
Query: 105 NFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ F +D G + L VF + + ++ VV Q A +QGTH+ K S VSG GKKP
Sbjct: 5 SLFKQDGSQAGEVTLNDSVFGIEPNESVVFDVVISQRASLRQGTHAHKNRSAVSGGGKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
WRQKGTGRAR G+ R PQ+RGG T+ GP PRS+A KL +KVR+L LK S + A+GKL+
Sbjct: 65 WRQKGTGRARQGSTRSPQWRGGGTVFGPNPRSYAYKLPQKVRQLALKSVYSTKVADGKLI 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNV 281
+ L+ + KT + + +KVL+ +E +L+ +NL V V + +V
Sbjct: 125 AVDTLDFAAPKTAEFAKVISALSIERKVLVVLPNEGNEFAELSARNLENVKVTTANSASV 184
Query: 282 YSILQHDTLVMSRDAVNKI 300
I+ D L++ + A+ +I
Sbjct: 185 LDIVSADKLLVVQSALTEI 203
>gi|254516912|ref|ZP_05128970.1| ribosomal protein, L4/L1 family [gamma proteobacterium NOR5-3]
gi|219674417|gb|EED30785.1| ribosomal protein, L4/L1 family [gamma proteobacterium NOR5-3]
Length = 188
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 113/174 (64%), Gaps = 2/174 (1%)
Query: 127 KDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTM 186
+D++H+VV LA +QGT + KT S+V G GKKPWRQKGTGRAR GT+R P +R G
Sbjct: 12 EDLVHQVVTSFLAGARQGTRAQKTRSDVRGGGKKPWRQKGTGRARAGTIRSPIWRSGGVT 71
Query: 187 HGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQMENT 246
+P+ H++K+N+K+ R LK +S A + +L+V E+L++ + KTK +V+ +
Sbjct: 72 FAARPQDHSVKVNRKMYRAALKTIISELARQDRLVVVENLDLDAPKTKLLVSQLDGYGVN 131
Query: 247 KKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNKI 300
+L+ G ++E L LA++NL V+V G++ S+L HD ++++ DAV KI
Sbjct: 132 SALLIS--GEVNENLYLASRNLQKVDVRDVQGIDPVSLLSHDKVMVTVDAVKKI 183
>gi|15607842|ref|NP_215216.1| 50S ribosomal protein L4 RplD [Mycobacterium tuberculosis H37Rv]
gi|15840109|ref|NP_335146.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis CDC1551]
gi|31791887|ref|NP_854380.1| 50S ribosomal protein L4 [Mycobacterium bovis AF2122/97]
gi|121636624|ref|YP_976847.1| 50S ribosomal protein L4 [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|148660477|ref|YP_001282000.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis H37Ra]
gi|148821907|ref|YP_001286661.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis F11]
gi|167967944|ref|ZP_02550221.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis H37Ra]
gi|224989096|ref|YP_002643783.1| 50S ribosomal protein L4 [Mycobacterium bovis BCG str. Tokyo 172]
gi|253797645|ref|YP_003030646.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis KZN 1435]
gi|254231022|ref|ZP_04924349.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis C]
gi|254363649|ref|ZP_04979695.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis str.
Haarlem]
gi|254549663|ref|ZP_05140110.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
gi|289442103|ref|ZP_06431847.1| LSU ribosomal protein L4/L1 [Mycobacterium tuberculosis T46]
gi|289446262|ref|ZP_06436006.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis CPHL_A]
gi|289568646|ref|ZP_06448873.1| ribosomal protein L4 [Mycobacterium tuberculosis T17]
gi|289573310|ref|ZP_06453537.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis K85]
gi|289744426|ref|ZP_06503804.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis 02_1987]
gi|289749209|ref|ZP_06508587.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis T92]
gi|289752749|ref|ZP_06512127.1| ribosomal protein L4 [Mycobacterium tuberculosis EAS054]
gi|289756790|ref|ZP_06516168.1| ribosomal protein L4 [Mycobacterium tuberculosis T85]
gi|289760829|ref|ZP_06520207.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis GM 1503]
gi|294996197|ref|ZP_06801888.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis 210]
gi|297633201|ref|ZP_06950981.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis KZN 4207]
gi|297730181|ref|ZP_06959299.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis KZN R506]
gi|298524193|ref|ZP_07011602.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis 94_M4241A]
gi|306774813|ref|ZP_07413150.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu001]
gi|306781455|ref|ZP_07419792.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu002]
gi|306783354|ref|ZP_07421676.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu003]
gi|306787723|ref|ZP_07426045.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu004]
gi|306794490|ref|ZP_07432792.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu005]
gi|306796456|ref|ZP_07434758.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu006]
gi|306802316|ref|ZP_07438984.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu008]
gi|306806526|ref|ZP_07443194.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu007]
gi|306966723|ref|ZP_07479384.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu009]
gi|306970915|ref|ZP_07483576.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu010]
gi|307078645|ref|ZP_07487815.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu011]
gi|307083209|ref|ZP_07492322.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu012]
gi|313657508|ref|ZP_07814388.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis KZN V2475]
gi|339630771|ref|YP_004722413.1| 50S ribosomal protein L4 [Mycobacterium africanum GM041182]
gi|375294921|ref|YP_005099188.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis KZN 4207]
gi|378770458|ref|YP_005170191.1| 50S ribosomal protein L4 [Mycobacterium bovis BCG str. Mexico]
gi|383306603|ref|YP_005359414.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis RGTB327]
gi|385990177|ref|YP_005908475.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis CCDC5180]
gi|385993777|ref|YP_005912075.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis CCDC5079]
gi|385997481|ref|YP_005915779.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis CTRI-2]
gi|386003734|ref|YP_005922013.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis RGTB423]
gi|392385422|ref|YP_005307051.1| rplD [Mycobacterium tuberculosis UT205]
gi|392431131|ref|YP_006472175.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis KZN 605]
gi|397672511|ref|YP_006514046.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis H37Rv]
gi|422811642|ref|ZP_16860043.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis CDC1551A]
gi|424805800|ref|ZP_18231231.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis W-148]
gi|424946471|ref|ZP_18362167.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis NCGM2209]
gi|449062724|ref|YP_007429807.1| 50S ribosomal protein L4 [Mycobacterium bovis BCG str. Korea 1168P]
gi|46397667|sp|P60728.1|RL4_MYCBO RecName: Full=50S ribosomal protein L4
gi|46397668|sp|P60729.1|RL4_MYCTU RecName: Full=50S ribosomal protein L4
gi|166234687|sp|A1KGI3.1|RL4_MYCBP RecName: Full=50S ribosomal protein L4
gi|166234691|sp|A5U088.1|RL4_MYCTA RecName: Full=50S ribosomal protein L4
gi|254803746|sp|C1AL36.1|RL4_MYCBT RecName: Full=50S ribosomal protein L4
gi|13880259|gb|AAK44960.1| ribosomal protein L4 [Mycobacterium tuberculosis CDC1551]
gi|31617474|emb|CAD93584.1| PROBABLE 50S RIBOSOMAL PROTEIN L4 RPLD [Mycobacterium bovis
AF2122/97]
gi|121492271|emb|CAL70738.1| Probable 50S ribosomal protein L4 rplD [Mycobacterium bovis BCG
str. Pasteur 1173P2]
gi|124600081|gb|EAY59091.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis C]
gi|134149163|gb|EBA41208.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis str.
Haarlem]
gi|148504629|gb|ABQ72438.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis H37Ra]
gi|148720434|gb|ABR05059.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis F11]
gi|224772209|dbj|BAH25015.1| 50S ribosomal protein L4 [Mycobacterium bovis BCG str. Tokyo 172]
gi|253319148|gb|ACT23751.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis KZN 1435]
gi|289415022|gb|EFD12262.1| LSU ribosomal protein L4/L1 [Mycobacterium tuberculosis T46]
gi|289419220|gb|EFD16421.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis CPHL_A]
gi|289537741|gb|EFD42319.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis K85]
gi|289542400|gb|EFD46048.1| ribosomal protein L4 [Mycobacterium tuberculosis T17]
gi|289684954|gb|EFD52442.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis 02_1987]
gi|289689796|gb|EFD57225.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis T92]
gi|289693336|gb|EFD60765.1| ribosomal protein L4 [Mycobacterium tuberculosis EAS054]
gi|289708335|gb|EFD72351.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis GM 1503]
gi|289712354|gb|EFD76366.1| ribosomal protein L4 [Mycobacterium tuberculosis T85]
gi|298493987|gb|EFI29281.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis 94_M4241A]
gi|308216703|gb|EFO76102.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu001]
gi|308325755|gb|EFP14606.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu002]
gi|308331848|gb|EFP20699.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu003]
gi|308335635|gb|EFP24486.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu004]
gi|308337250|gb|EFP26101.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu005]
gi|308343116|gb|EFP31967.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu006]
gi|308347003|gb|EFP35854.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu007]
gi|308350982|gb|EFP39833.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu008]
gi|308355578|gb|EFP44429.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu009]
gi|308359536|gb|EFP48387.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu010]
gi|308363441|gb|EFP52292.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu011]
gi|308367079|gb|EFP55930.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu012]
gi|323720926|gb|EGB29992.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis CDC1551A]
gi|326905076|gb|EGE52009.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis W-148]
gi|328457426|gb|AEB02849.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis KZN 4207]
gi|339293731|gb|AEJ45842.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis CCDC5079]
gi|339297370|gb|AEJ49480.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis CCDC5180]
gi|339330127|emb|CCC25783.1| putative 50S ribosomal protein L4 RPLD [Mycobacterium africanum
GM041182]
gi|341600640|emb|CCC63310.1| probable 50S ribosomal protein L4 rplD [Mycobacterium bovis BCG
str. Moreau RDJ]
gi|344218527|gb|AEM99157.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis CTRI-2]
gi|356592779|gb|AET18008.1| 50S ribosomal protein L4 [Mycobacterium bovis BCG str. Mexico]
gi|358230986|dbj|GAA44478.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis NCGM2209]
gi|378543973|emb|CCE36245.1| rplD [Mycobacterium tuberculosis UT205]
gi|379026853|dbj|BAL64586.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis str. Erdman =
ATCC 35801]
gi|380720556|gb|AFE15665.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis RGTB327]
gi|380724222|gb|AFE12017.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis RGTB423]
gi|392052540|gb|AFM48098.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis KZN 605]
gi|395137416|gb|AFN48575.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis H37Rv]
gi|440580166|emb|CCG10569.1| putative 50S RIBOSOMAL protein L4 RPLD [Mycobacterium tuberculosis
7199-99]
gi|444894192|emb|CCP43446.1| 50S ribosomal protein L4 RplD [Mycobacterium tuberculosis H37Rv]
gi|449031232|gb|AGE66659.1| 50S ribosomal protein L4 [Mycobacterium bovis BCG str. Korea 1168P]
Length = 223
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 113/191 (59%), Gaps = 2/191 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++FDVP ++H+VV Q A +QGTHSTKT EVSG G+KP+RQKGTGRAR
Sbjct: 22 GAIELPAELFDVPANIALMHQVVTAQRAAARQGTHSTKTRGEVSGGGRKPYRQKGTGRAR 81
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL-EVPS 230
G+ R PQF GG +HGPKPR ++ + KK+ L+ ALS RA G++ +L E +
Sbjct: 82 QGSTRAPQFTGGGVVHGPKPRDYSQRTPKKMIAAALRGALSDRARNGRIHAITELVEGQN 141
Query: 231 HKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTL 290
TK + + K+VL+ G K + +NL V++L LN Y +L+ D +
Sbjct: 142 PSTKSARAFLASLTERKQVLVVIGRSDEAGAK-SVRNLPGVHILAPDQLNTYDVLRADDV 200
Query: 291 VMSRDAVNKIV 301
V S +A+N +
Sbjct: 201 VFSVEALNAYI 211
>gi|86739296|ref|YP_479696.1| 50S ribosomal protein L4 [Frankia sp. CcI3]
gi|109893595|sp|Q2JFH5.1|RL4_FRASC RecName: Full=50S ribosomal protein L4
gi|86566158|gb|ABD09967.1| LSU ribosomal protein L4P [Frankia sp. CcI3]
Length = 245
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 115/201 (57%), Gaps = 6/201 (2%)
Query: 110 DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGR 169
+ G + L G VFDVP+ +IH+VV QLA +QGTH TKT EV G G+KP+RQKGTGR
Sbjct: 25 EGGSVELPGGVFDVPLNIPLIHQVVVAQLAAARQGTHDTKTRGEVRGGGRKPYRQKGTGR 84
Query: 170 ARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL--- 226
AR G+LR PQF GG T+HGP PR + + KK++ L+ ALS RA ++ V L
Sbjct: 85 ARQGSLRAPQFTGGGTVHGPTPRRYDQRTPKKMKAAALRGALSDRARNNRVHVVSSLVSG 144
Query: 227 EVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQ 286
E PS TK V + +T++VL+ K + +N+ V++L LN Y +L
Sbjct: 145 ETPS--TKSAVTALRTIADTRRVLVVASRSDELTWK-SLRNVAAVHLLDPGQLNTYDVLV 201
Query: 287 HDTLVMSRDAVNKIVDRMHTP 307
D +V DA+ + R P
Sbjct: 202 SDDVVFIEDALAAFLARDTRP 222
>gi|116624201|ref|YP_826357.1| 50S ribosomal protein L4 [Candidatus Solibacter usitatus Ellin6076]
gi|122253083|sp|Q01W93.1|RL4_SOLUE RecName: Full=50S ribosomal protein L4
gi|116227363|gb|ABJ86072.1| LSU ribosomal protein L4P [Candidatus Solibacter usitatus
Ellin6076]
Length = 208
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 121/204 (59%), Gaps = 1/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + N+ + LA DVF + + +++ VR A + GTH+TK EVSG+GKK
Sbjct: 4 VDVVDLNNQVVSSVELADDVFGAEVNQSLLYEAVRQYQASLRAGTHATKVRREVSGSGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
W+QKGTGRAR G++R P +R G T+HGP+PR +A KL KK+ L+ ALSA+ +G+L
Sbjct: 64 LWKQKGTGRARIGSVRSPLWRHGATVHGPQPRDYAYKLPKKMLLGALRSALSAKVRDGEL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
V ++ HKTK + +++E + VL+ D + L+L +NL V +L + +N
Sbjct: 124 KVVQNFNFSDHKTKNAMGALSKLEAGRTVLVVDNED-NRNLELGIRNLKGVTLLATREVN 182
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
Y +L H ++++S A K + +
Sbjct: 183 PYHLLGHKSVLISEAAARKFSEAL 206
>gi|363898729|ref|ZP_09325251.1| 50S ribosomal protein L4 [Oribacterium sp. ACB1]
gi|395209095|ref|ZP_10398260.1| 50S ribosomal protein L4 [Oribacterium sp. ACB8]
gi|361960634|gb|EHL13870.1| 50S ribosomal protein L4 [Oribacterium sp. ACB1]
gi|394705696|gb|EJF13222.1| 50S ribosomal protein L4 [Oribacterium sp. ACB8]
Length = 206
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 113/200 (56%), Gaps = 2/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G M L +F P+ + ++H V QLA ++QGT T SEVSG G+K
Sbjct: 4 VSVFNMQGKEVGKMDLNDAIFAAPVHEHLLHLAVVAQLANKRQGTQKALTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G++R PQ++GG + P PR + +NKK +R LK ALS AE KL
Sbjct: 64 PWRQKGTGHARQGSIRAPQWKGGGVVFAPTPRDYTTTMNKKEKRAALKSALSNAVAENKL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V +++ KTK N N + K +L D + L+ +N+ V LN
Sbjct: 124 IVVDEIHFDEIKTKNFQNMLNALNVQKAFVLLDEN--DKNTVLSARNIQDVKTAQVNELN 181
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY +L++ T++ ++ A+ K+
Sbjct: 182 VYDVLRYGTVLATKAALLKV 201
>gi|343520774|ref|ZP_08757743.1| 50S ribosomal protein L4 [Parvimonas sp. oral taxon 393 str. F0440]
gi|343397732|gb|EGV10266.1| 50S ribosomal protein L4 [Parvimonas sp. oral taxon 393 str. F0440]
Length = 207
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 121/205 (59%), Gaps = 8/205 (3%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P N +N E G + L +F + + + +++ VV+ LA R+QGT S KT +EV G
Sbjct: 1 MPKVNVYNQLGEVVGDIELNEAIFGIEVNEHVVYEVVKNHLANRRQGTQSAKTRAEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ++GG + PKPRS+ + KKVRRL +K L+++ E
Sbjct: 61 GRKPWRQKGTGRARQGSIRAPQWKGGGVVFAPKPRSYRYSVPKKVRRLAMKSVLTSKVLE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQ--MENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
G+L + + L V + TK +E ++L +G + K + NL V +
Sbjct: 121 GELRILDALTVDAFSTKKAKEILKNLSLETKTMIVLPEGNDMIVK---SFANLPKVETVV 177
Query: 276 SVGLNVYSILQHDTLVMSRDAVNKI 300
+NVY +++ D LV+ +DA++KI
Sbjct: 178 VDYMNVYDLMRFDNLVIVKDALSKI 202
>gi|392423895|ref|YP_006464889.1| 50S ribosomal protein L4, bacterial/organelle [Desulfosporosinus
acidiphilus SJ4]
gi|391353858|gb|AFM39557.1| 50S ribosomal protein L4, bacterial/organelle [Desulfosporosinus
acidiphilus SJ4]
Length = 207
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 113/199 (56%), Gaps = 1/199 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + L+ ++F + ++H V QLA + GT S EV G G+K
Sbjct: 4 VQVVNMQGAPVGEIELSDNIFGITPNVPVLHSAVVSQLASLRHGTQSALLRGEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G+ R P +RGG + PKPR + KL KKVRRL L ALS++ E +L
Sbjct: 64 PWRQKGTGRARSGSSRSPVWRGGGVVFAPKPRKYGFKLPKKVRRLALHSALSSKVIEQQL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + L++ KT+ IV ++ +KK ++ + E + + N+ V + G+N
Sbjct: 124 IVLDALKLEEVKTREIVKLLKALQVSKKAMIVT-DEVDEAVFRSASNIEGVVTMDVAGMN 182
Query: 281 VYSILQHDTLVMSRDAVNK 299
V +L HD LVM++ A++K
Sbjct: 183 VVDLLNHDVLVMTKAAISK 201
>gi|2113867|emb|CAA73673.1| rplD [Mycobacterium bovis BCG]
Length = 223
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 114/191 (59%), Gaps = 2/191 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++FDVP ++H+VV Q A +QGTHSTKT EVSG G+KP+RQKGTGRAR
Sbjct: 22 GAIELPAELFDVPANIALMHQVVTAQRAAARQGTHSTKTRGEVSGGGRKPYRQKGTGRAR 81
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL-EVPS 230
G+ R PQF GG +HGPKPR ++ + KK+ L+ ALS RA G++ +L E +
Sbjct: 82 QGSTRAPQFTGGGVVHGPKPRDYSQRTPKKMIAAALRGALSDRARNGRIHAITELVEGQN 141
Query: 231 HKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTL 290
TK + + K+VL+ G E + + +NL V++L LN Y +L+ D +
Sbjct: 142 PSTKSARAFLVSLTERKQVLVVIGRS-DEGRRESVRNLPGVHILAPDQLNTYDVLRADDV 200
Query: 291 VMSRDAVNKIV 301
V S +A+N +
Sbjct: 201 VFSVEALNAYI 211
>gi|377809992|ref|YP_005005213.1| 50S ribosomal protein L4 [Pediococcus claussenii ATCC BAA-344]
gi|361056733|gb|AEV95537.1| 50S ribosomal protein L4 [Pediococcus claussenii ATCC BAA-344]
Length = 207
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 75/204 (36%), Positives = 116/204 (56%), Gaps = 4/204 (1%)
Query: 104 TNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ F +D G + L D+F + +++ V Q A +QGTH+ K S V G GKK
Sbjct: 4 VSLFKQDGSQNGDVELNADIFGIEPNDNVVFEAVVMQRASMRQGTHAVKNRSAVRGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+RGG + GP PRS+A + KK+RRL LK LS + + L
Sbjct: 64 PWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYSIPKKMRRLALKSVLSQKVLDESL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + + KTK + ++ KK L+ +E LA +NL V ++ G+N
Sbjct: 124 VVVDAFNFEAPKTKEFAGSLSSLKVEKKALIVLEDD-NESAVLAARNLANVKIVSPEGIN 182
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
V I+ D LV+++ A++++ + +
Sbjct: 183 VLDIISSDKLVITQKALSQVEEAL 206
>gi|73661973|ref|YP_300754.1| 50S ribosomal protein L4 [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|418575457|ref|ZP_13139608.1| 50S ribosomal protein L4 [Staphylococcus saprophyticus subsp.
saprophyticus KACC 16562]
gi|82581595|sp|Q49ZG7.1|RL4_STAS1 RecName: Full=50S ribosomal protein L4
gi|72494488|dbj|BAE17809.1| 50S ribosomal protein L4 [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|379326077|gb|EHY93204.1| 50S ribosomal protein L4 [Staphylococcus saprophyticus subsp.
saprophyticus KACC 16562]
Length = 207
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 75/189 (39%), Positives = 110/189 (58%), Gaps = 1/189 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ VF + +++ + Q A +QGTH+ K S V G G+KPWRQKGTGRAR
Sbjct: 15 GSVELSDAVFAIEPNNNVLFEAINLQRASLRQGTHAVKNRSAVRGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
GT+R PQ+RGG + GP PRS++ K+ KK+RRL L+ ALS + E L V + L + +
Sbjct: 75 QGTIRAPQWRGGGIVFGPTPRSYSYKMPKKMRRLALRSALSFKVQEKGLTVVDALNLDAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KTK + +E KKVL+ + L+ +N+ V V + GLNV I D++V
Sbjct: 135 KTKEFKTVLSNLEQPKKVLVVT-ESEDVNVALSARNIPGVQVTTAQGLNVLDITSADSVV 193
Query: 292 MSRDAVNKI 300
++ A K+
Sbjct: 194 ITESAAKKV 202
>gi|414157744|ref|ZP_11414040.1| 50S ribosomal protein L4 [Streptococcus sp. F0441]
gi|410871662|gb|EKS19609.1| 50S ribosomal protein L4 [Streptococcus sp. F0441]
Length = 207
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 111/191 (58%), Gaps = 5/191 (2%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G +VL +F + + ++ V+ Q A +QGTH+ K S VSG G+KPWRQKGTGRAR
Sbjct: 15 GEVVLNDAIFGIEPNQSVVFDVIISQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+RGG T+ GP PRS+A KL +KVRRL LK S + AE K + + LE +
Sbjct: 75 QGSIRSPQWRGGGTVFGPTPRSYAYKLPQKVRRLALKSVYSEKVAENKFVAVDSLEFTAP 134
Query: 232 KTKFIVNYYNQMENTKKVL--LCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDT 289
KT + KVL L +G +E L+ +NL V V + +V I D
Sbjct: 135 KTAEFAKVLAALSIDSKVLVILEEG---NEFAALSARNLSNVKVATATTASVLDIANSDK 191
Query: 290 LVMSRDAVNKI 300
L++++ A++KI
Sbjct: 192 LLVTQAAISKI 202
>gi|417002533|ref|ZP_11941916.1| 50S ribosomal protein L4 [Anaerococcus prevotii ACS-065-V-Col13]
gi|325479201|gb|EGC82298.1| 50S ribosomal protein L4 [Anaerococcus prevotii ACS-065-V-Col13]
Length = 207
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 120/200 (60%), Gaps = 1/200 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N E+ G + L +F+ I + ++ VV+ QLA ++QGT S KT SEV G G+K
Sbjct: 4 VDILNIKGENVGSLELNETLFNTEISEHTVYEVVKNQLANKRQGTQSAKTRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQKGTGRAR G++R P + GG + PKPR ++ K+ KK+RR L L+++ + +L
Sbjct: 64 PFRQKGTGRARQGSIRAPHYTGGGVVFAPKPRDYSYKVPKKLRRKALYSVLTSKVNDNEL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V EDL + + KTK + K + +E + + +N+ V+V + +N
Sbjct: 124 IVLEDLNLENAKTKEASQVLKAINAGDKAYIVTAENDNEVYR-SFRNIEGVDVSAASLIN 182
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY +++H+ LV+++DAV K+
Sbjct: 183 VYDLVKHNKLVITKDAVAKL 202
>gi|332685664|ref|YP_004455438.1| 50S ribosomal protein L4 [Melissococcus plutonius ATCC 35311]
gi|379726738|ref|YP_005318923.1| 50S ribosomal protein L4p [Melissococcus plutonius DAT561]
gi|332369673|dbj|BAK20629.1| LSU ribosomal protein L4p (L1e) [Melissococcus plutonius ATCC
35311]
gi|376317641|dbj|BAL61428.1| 50S ribosomal protein L4p [Melissococcus plutonius DAT561]
Length = 207
Score = 136 bits (343), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 77/204 (37%), Positives = 120/204 (58%), Gaps = 6/204 (2%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P F +D G M L D+F + +++++ + Q A +QGTH+ K S V G
Sbjct: 1 MPKIALFKQDGTKNGEMTLNEDIFGIDPNQNVVYDAIIMQRASLRQGTHAVKNRSAVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ KL +KVRRL +K LS + A+
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPRKVRRLAMKSVLSEKVAD 120
Query: 218 GKLLVFEDLEVPSHKTK-FIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
L+ E L + KTK F N +TK +++ + G ++ L+ +NL V+V S
Sbjct: 121 NNLVAVESLNFETPKTKEFKQVLANLSIDTKVLIILEDG--NDNAALSARNLPNVSVATS 178
Query: 277 VGLNVYSILQHDTLVMSRDAVNKI 300
++V I+ + LV ++ A+ +I
Sbjct: 179 KNVSVLDIVSANKLVATQTALTQI 202
>gi|346312824|ref|ZP_08854359.1| 50S ribosomal protein L4 [Erysipelotrichaceae bacterium 2_2_44A]
gi|345905975|gb|EGX75709.1| 50S ribosomal protein L4 [Erysipelotrichaceae bacterium 2_2_44A]
Length = 209
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/188 (40%), Positives = 107/188 (56%), Gaps = 1/188 (0%)
Query: 114 MVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHG 173
+ LA VF + + I V Q A +QGTH TK +EV G G+KPWRQKGTGRAR G
Sbjct: 17 ITLADTVFGIEPNQQCIFDAVIMQRASMRQGTHDTKNRTEVRGGGRKPWRQKGTGRARQG 76
Query: 174 TLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKT 233
++R Q+RGG + GP PR++ KLNKKVRRL LK ALS + E + V + E+ + KT
Sbjct: 77 SIRATQWRGGGIVFGPTPRNYGYKLNKKVRRLALKSALSEKVLENAMSVVDKFELEAPKT 136
Query: 234 KFIVNYYNQMENTKKVL-LCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVM 292
K + KK L + G E L+ +N+ + +L + GLNVY I+ + +V
Sbjct: 137 KAFNQIVADINAPKKTLFVVSEGEDFENAFLSMRNIPTMMMLTADGLNVYDIVNANKIVF 196
Query: 293 SRDAVNKI 300
+ AV +
Sbjct: 197 TEAAVKDV 204
>gi|336326438|ref|YP_004606404.1| 50S ribosomal protein L4 [Corynebacterium resistens DSM 45100]
gi|336102420|gb|AEI10240.1| 50S ribosomal protein L4 [Corynebacterium resistens DSM 45100]
Length = 217
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 118/196 (60%), Gaps = 10/196 (5%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +FD + ++H+VV QLA ++QGTH+TK +V G G+KPWRQKGTGRAR
Sbjct: 17 GSVELPASIFDAEVSVALMHQVVTAQLAAKRQGTHATKARGDVRGGGRKPWRQKGTGRAR 76
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL---EV 228
G++R P F GG T+HGP+PR ++ + KK++ L+ AL+ RA ++ V EDL +
Sbjct: 77 QGSIRAPHFTGGGTVHGPQPRDYSQRTPKKMKAAALRGALTDRARHARIHVVEDLVPGQT 136
Query: 229 PSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKL--KLATQNLHYVNVLPSVGLNVYSILQ 286
PS TK + ++ + K VL+ G E + + + +NL V+ L S LN Y +L
Sbjct: 137 PS--TKSARGFLERLTDRKSVLVVLG---REDINSRKSVRNLPNVHTLVSDQLNTYDVLN 191
Query: 287 HDTLVMSRDAVNKIVD 302
D +V S +A+N ++
Sbjct: 192 ADDVVFSVEALNAFIN 207
>gi|313897239|ref|ZP_07830783.1| 50S ribosomal protein L4 [Clostridium sp. HGF2]
gi|373122835|ref|ZP_09536695.1| 50S ribosomal protein L4 [Erysipelotrichaceae bacterium 21_3]
gi|422328954|ref|ZP_16409980.1| 50S ribosomal protein L4 [Erysipelotrichaceae bacterium 6_1_45]
gi|312957960|gb|EFR39584.1| 50S ribosomal protein L4 [Clostridium sp. HGF2]
gi|371658365|gb|EHO23646.1| 50S ribosomal protein L4 [Erysipelotrichaceae bacterium 6_1_45]
gi|371662787|gb|EHO27985.1| 50S ribosomal protein L4 [Erysipelotrichaceae bacterium 21_3]
Length = 209
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/188 (40%), Positives = 107/188 (56%), Gaps = 1/188 (0%)
Query: 114 MVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHG 173
+ LA VF + + I V Q A +QGTH TK +EV G G+KPWRQKGTGRAR G
Sbjct: 17 ITLADTVFGIEPNQQCIFDAVIMQRASMRQGTHDTKNRTEVRGGGRKPWRQKGTGRARQG 76
Query: 174 TLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKT 233
++R Q+RGG + GP PR++ KLNKKVRRL LK ALS + E + V + E+ + KT
Sbjct: 77 SIRATQWRGGGIVFGPTPRNYGYKLNKKVRRLALKSALSEKVLENAMSVVDKFELEAPKT 136
Query: 234 KFIVNYYNQMENTKKVL-LCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVM 292
K + KK L + G E L+ +N+ + +L + GLNVY I+ + +V
Sbjct: 137 KAFNQIIADINAPKKTLFVVSEGEDFENAFLSMRNIPTMMMLTADGLNVYDIVNANKIVF 196
Query: 293 SRDAVNKI 300
+ AV +
Sbjct: 197 TEAAVKDV 204
>gi|312140917|ref|YP_004008253.1| 50S ribosomal protein l4 rpld [Rhodococcus equi 103S]
gi|325675445|ref|ZP_08155129.1| 50S ribosomal protein L4 [Rhodococcus equi ATCC 33707]
gi|311890256|emb|CBH49574.1| 50S ribosomal protein L4 RplD [Rhodococcus equi 103S]
gi|325553416|gb|EGD23094.1| 50S ribosomal protein L4 [Rhodococcus equi ATCC 33707]
Length = 221
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/206 (40%), Positives = 119/206 (57%), Gaps = 6/206 (2%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
L + V + G + L ++FD ++H+VV QLA +QGTHSTKT EV G G
Sbjct: 8 LTLDVKAAGGKTNGTVDLPSEIFDATANIALMHQVVVAQLAAARQGTHSTKTRGEVRGGG 67
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KKP+RQKGTGRAR G+ R PQF GG T+HGP+PR ++ + KK++ L+ ALS RA
Sbjct: 68 KKPYRQKGTGRARQGSTRAPQFAGGGTVHGPQPRDYSQRTPKKMKAAALRGALSDRARNE 127
Query: 219 KLLVFEDL---EVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++ V +L +VPS TK ++ ++ + KK LL G K + QNL V+ +
Sbjct: 128 RIHVITELVAGQVPS--TKTAKSFLGELSDRKKFLLVVGREDIAAWK-SVQNLDGVHPIA 184
Query: 276 SVGLNVYSILQHDTLVMSRDAVNKIV 301
LN Y +L D +V S +A+N +
Sbjct: 185 PDQLNTYDVLNSDDVVFSLEALNTFI 210
>gi|403738730|ref|ZP_10951331.1| 50S ribosomal protein L4 [Austwickia chelonae NBRC 105200]
gi|403191380|dbj|GAB78101.1| 50S ribosomal protein L4 [Austwickia chelonae NBRC 105200]
Length = 218
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/205 (39%), Positives = 120/205 (58%), Gaps = 8/205 (3%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I + N + G + L ++FDV +IH+VV QLA +QGTH+TKT EV G GKK
Sbjct: 4 IDILNAEGQKSGSIELPSELFDVQTNVPLIHQVVVAQLAAARQGTHATKTRGEVRGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQKGTGRAR G+ R PQF GG T+HGP+PR +A + KK++ L+ ALS RA G++
Sbjct: 64 PYRQKGTGRARQGSTRAPQFAGGGTVHGPQPRDYAQRTPKKMKVAALRGALSDRARHGRI 123
Query: 221 LV---FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKL-ATQNLHYVNVLPS 276
F + + PS TK + N++ + +L+ G E++ L + +N+ V+ L +
Sbjct: 124 HCVSSFVEGDAPS--TKVAASLLNKLTERRNLLVVLG--RDEEVSLRSIRNIEAVHCLAA 179
Query: 277 VGLNVYSILQHDTLVMSRDAVNKIV 301
LN Y +L D +V S A+ +
Sbjct: 180 DQLNTYDVLCADDIVFSEAALRSFI 204
>gi|254780260|ref|YP_003064673.1| 50S ribosomal protein L4 [Candidatus Liberibacter asiaticus str.
psy62]
gi|254039937|gb|ACT56733.1| 50S ribosomal protein L4 [Candidatus Liberibacter asiaticus str.
psy62]
Length = 207
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 117/204 (57%), Gaps = 1/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N EDKG + ++ D+F + ++ I+ RV+RWQ +++ G +K SEV+ TG K
Sbjct: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
+ QKGTGRARH + QFRGG GP P L KKVR L L+ ALS + +
Sbjct: 64 MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V ++L KTK++V + ++ L+ DG + +LA +N+ +N+LP G+N
Sbjct: 124 MVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL+ LV+S+ A+ + DR
Sbjct: 183 VYDILRCSKLVLSKSAIEALEDRF 206
>gi|195952644|ref|YP_002120934.1| 50S ribosomal protein L4 [Hydrogenobaculum sp. Y04AAS1]
gi|226730675|sp|B4U745.1|RL4_HYDS0 RecName: Full=50S ribosomal protein L4
gi|195932256|gb|ACG56956.1| ribosomal protein L4/L1e [Hydrogenobaculum sp. Y04AAS1]
Length = 200
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 113/192 (58%), Gaps = 2/192 (1%)
Query: 116 LAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTL 175
L DVF+V +K I+ VVRWQLAKR+QGTHSTKT +EV+ + KK QKGTG ARHG
Sbjct: 8 LRDDVFNVEPKKHILWDVVRWQLAKRRQGTHSTKTRAEVNCSKKKIMPQKGTGNARHGAR 67
Query: 176 RGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL--EVPSHKT 233
F GG +HGP PR + KL+KK R++ L +ALS +A + V E L + KT
Sbjct: 68 SANIFVGGGVVHGPTPRDYEYKLSKKYRKIALAMALSTKAKNNSVYVLESLLSSLGKPKT 127
Query: 234 KFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMS 293
K + + K +L ++ + + +N+ VLP VGLNVY IL D L++
Sbjct: 128 KVAFELLKEKGISDKKVLVVTKDQNDIVSKSFKNIPNTKVLPVVGLNVYDILWADALLIE 187
Query: 294 RDAVNKIVDRMH 305
+ A+ KI +R++
Sbjct: 188 QGALEKIYERVN 199
>gi|313123112|ref|YP_004033371.1| 50S ribosomal protein l4 [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
gi|422845101|ref|ZP_16891811.1| 50S ribosomal protein L4 [Lactobacillus delbrueckii subsp. lactis
DSM 20072]
gi|312279675|gb|ADQ60394.1| 50S ribosomal protein L4 [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
gi|325684721|gb|EGD26875.1| 50S ribosomal protein L4 [Lactobacillus delbrueckii subsp. lactis
DSM 20072]
Length = 205
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/189 (40%), Positives = 112/189 (59%), Gaps = 3/189 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +VF V + ++ + Q A ++QGT K S V G GKKPWRQKGTGRAR
Sbjct: 15 GEVTLNDNVFSVEPNEAVVFDAIIRQRAGKRQGTSKVKNRSAVRGGGKKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+RGG + GP PRS+A + +K RRL +K LS + + L+V + L + +
Sbjct: 75 QGSIRAPQWRGGGVVFGPTPRSYAYSMPRKQRRLAIKSVLSQKLLDQNLVVLDKLTLDAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KTK V N ++ KVL+ + ++L+ +NL V V+P GLNV + +D LV
Sbjct: 135 KTKDFVAILNGLKLEGKVLVV---SDDKNVQLSAKNLPKVKVVPVNGLNVEDAVNYDKLV 191
Query: 292 MSRDAVNKI 300
+++D V KI
Sbjct: 192 LTQDDVKKI 200
>gi|296268551|ref|YP_003651183.1| 50S ribosomal protein L4 [Thermobispora bispora DSM 43833]
gi|296091338|gb|ADG87290.1| ribosomal protein L4/L1e [Thermobispora bispora DSM 43833]
Length = 216
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/210 (38%), Positives = 128/210 (60%), Gaps = 12/210 (5%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I V + G + L ++F + ++H+VV QLA R+QGTH+TKT +VSG GKK
Sbjct: 5 IDVLDANGAKAGTVELPEEIFGAKVNVPLMHQVVVAQLAARRQGTHATKTRGDVSGGGKK 64
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQKGTGRAR G++R PQF GG T+HGP+PRS+ + KK++ L+ ALS RA+ G++
Sbjct: 65 PYRQKGTGRARQGSIRAPQFTGGGTVHGPQPRSYDQRTPKKMKAAALRGALSDRASCGRV 124
Query: 221 LVFEDL---EVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKL---ATQNLHYVNVL 274
V +L + P KTK + ++ +VL+ + E +L + +N+ V++L
Sbjct: 125 HVVTNLITGDTP--KTKVALAALRKVTQAPRVLV----VVDENDELTWRSLRNVPEVHLL 178
Query: 275 PSVGLNVYSILQHDTLVMSRDAVNKIVDRM 304
+ LN Y +L +D +V +R+A ++V R+
Sbjct: 179 DAGQLNTYDVLVNDDVVFTREAFEQVVARL 208
>gi|296119210|ref|ZP_06837780.1| ribosomal protein L4/L1 family protein [Corynebacterium
ammoniagenes DSM 20306]
gi|295967836|gb|EFG81091.1| ribosomal protein L4/L1 family protein [Corynebacterium
ammoniagenes DSM 20306]
Length = 221
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/211 (38%), Positives = 124/211 (58%), Gaps = 10/211 (4%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+L + V + G + L ++FD + ++H+VV QLA +QGTHSTKT EV G
Sbjct: 3 NLKLDVQTAEGKTNGSVELPAEIFDAEVSIALMHQVVNAQLAAARQGTHSTKTRGEVRGG 62
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KP+RQKGTGRAR G++R P + GG T+HGPKPR +A + KK+ + L ALS RA
Sbjct: 63 GRKPFRQKGTGRARQGSIRAPHYTGGGTVHGPKPRDYAQRTPKKMIKAALFGALSDRARN 122
Query: 218 GKLLVFEDL---EVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKL--KLATQNLHYVN 272
++ V E+L + PS TK + ++ + K +LL G E L + + NL V+
Sbjct: 123 ERIHVIEELVAGQTPS--TKSAKAFIERLTDRKTILLVVG---REDLNARRSANNLPNVH 177
Query: 273 VLPSVGLNVYSILQHDTLVMSRDAVNKIVDR 303
+L + LN Y +L D +V S +A++ ++R
Sbjct: 178 ILDAGQLNTYDVLNADDVVFSVEALHSFINR 208
>gi|359407984|ref|ZP_09200457.1| ribosomal protein L4 [SAR116 cluster alpha proteobacterium HIMB100]
gi|356677050|gb|EHI49398.1| ribosomal protein L4 [SAR116 cluster alpha proteobacterium HIMB100]
Length = 205
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/204 (42%), Positives = 122/204 (59%), Gaps = 2/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N KG + LA VF + R DI+ RVV+WQLAKR+ GTH K SEVS TG K
Sbjct: 3 VDVKTIDNRKKGDIELADSVFGIEPRADIVARVVKWQLAKRRAGTHKVKGRSEVSKTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
+RQKGTGRAR G QFRGG +HGP R + L KK+R+LG++ LSA+ A G+L
Sbjct: 63 MFRQKGTGRARAGNGSVSQFRGGGVVHGPVVRGYEHSLPKKIRKLGMRSVLSAKMAAGQL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
++ +++ + KT + ++ T ++L G + A NL +V+VLP G N
Sbjct: 123 IILDEMSADA-KTSSLKGKLEKLGATNALILG-GETVDAGFGRAASNLPFVDVLPQQGAN 180
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY +++ D LV+SRDA + +R+
Sbjct: 181 VYDMVRRDVLVLSRDAAAYLEERL 204
>gi|170017942|ref|YP_001728861.1| 50S ribosomal protein L4 [Leuconostoc citreum KM20]
gi|414597678|ref|ZP_11447239.1| 50S ribosomal protein L4 [Leuconostoc citreum LBAE E16]
gi|421876144|ref|ZP_16307704.1| 50S ribosomal protein L4 [Leuconostoc citreum LBAE C10]
gi|421878523|ref|ZP_16310003.1| 50S ribosomal protein L4 [Leuconostoc citreum LBAE C11]
gi|226730683|sp|B1MW13.1|RL4_LEUCK RecName: Full=50S ribosomal protein L4
gi|169804799|gb|ACA83417.1| 50S ribosomal protein L4 [Leuconostoc citreum KM20]
gi|372558179|emb|CCF23824.1| 50S ribosomal protein L4 [Leuconostoc citreum LBAE C10]
gi|390447650|emb|CCF26123.1| 50S ribosomal protein L4 [Leuconostoc citreum LBAE C11]
gi|390481589|emb|CCF29300.1| 50S ribosomal protein L4 [Leuconostoc citreum LBAE E16]
Length = 207
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/182 (41%), Positives = 111/182 (60%), Gaps = 3/182 (1%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
VF + +I V Q A +QGTH+ K S VSG G+KPW+QKGTGRAR G++R PQ
Sbjct: 23 VFAIEPNNAVITDAVLMQRASMRQGTHAVKNRSAVSGGGRKPWKQKGTGRARAGSIREPQ 82
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTK-FIVN 238
FRGG + GP PRS+A ++N+K +L LK LS + AEGKL+V + L + KT+ F
Sbjct: 83 FRGGGIVFGPTPRSYAYRINRKAYQLALKSVLSQKVAEGKLVVVDALSFEAPKTQDFKKV 142
Query: 239 YYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVN 298
N +TK +++ D +E L+ +NL V V+ + G+NV ++ D LV+ + ++
Sbjct: 143 LANLSVDTKTLVVVDED--NENAILSARNLTNVQVMTTKGINVLDVVNADKLVIVQSSIE 200
Query: 299 KI 300
+I
Sbjct: 201 EI 202
>gi|334128945|ref|ZP_08502821.1| 50S ribosomal protein L4 [Centipeda periodontii DSM 2778]
gi|429737078|ref|ZP_19270951.1| 50S ribosomal protein L4 [Selenomonas sp. oral taxon 138 str.
F0429]
gi|333385972|gb|EGK57197.1| 50S ribosomal protein L4 [Centipeda periodontii DSM 2778]
gi|429153518|gb|EKX96300.1| 50S ribosomal protein L4 [Selenomonas sp. oral taxon 138 str.
F0429]
Length = 207
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 116/201 (57%), Gaps = 3/201 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + + G + L + F+V + ++H+ V QLA ++ GTH+TKT V G G+K
Sbjct: 4 VAVYDMSHNQVGEISLNDEFFNVEMNAGLLHQAVVLQLASQRLGTHATKTRGLVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G+ R P + GG T+ GP PR + + +K RRL LK ALS + G
Sbjct: 64 PWRQKGTGRARAGSTRSPLWVGGGTVFGPHPRKYGFTMPRKQRRLALKCALSDKVRTGDF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQME-NTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGL 279
+V + L+ + KTK V + N K + + ++ ++ +T N+ V + + G+
Sbjct: 124 IVLDQLDFEAPKTKAAVKLLSDFGVNAKSLFITADEAVN--VERSTSNIPGVKAISARGI 181
Query: 280 NVYSILQHDTLVMSRDAVNKI 300
NVY IL HD L +++DA+ +I
Sbjct: 182 NVYDILHHDKLFITKDAITRI 202
>gi|157108533|ref|XP_001650271.1| 50S ribosomal protein L4 [Aedes aegypti]
gi|108884031|gb|EAT48256.1| AAEL000701-PA [Aedes aegypti]
Length = 279
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 113/201 (56%), Gaps = 2/201 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G L+ +VF R DI+H+ + WQ R +KT +EV G G+KPW QKG GRAR
Sbjct: 65 GIQQLSSEVFGAAPRIDIVHQNIEWQRKYRFVSFSHSKTRNEVRGGGRKPWPQKGLGRAR 124
Query: 172 HGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPS 230
HG++R P +RGG HGP+ P +H L R LGL LS + A+ L + DL++P+
Sbjct: 125 HGSIRSPLWRGGGIAHGPRSPTTHFYMLPFFSRVLGLVSTLSIKLAQDDLHIVRDLDIPT 184
Query: 231 HKTKFIVNYYNQMENTKKVLLCDGGCIHEK-LKLATQNLHYVNVLPSVGLNVYSILQHDT 289
+++ + + VL D I + + + ++N++P GLNVYS+L+HDT
Sbjct: 185 EDPQYLRDLVQERAWGPSVLFIDSSDIMPRNISAGADEIDHINLMPVYGLNVYSMLKHDT 244
Query: 290 LVMSRDAVNKIVDRMHTPINR 310
LV+++ A +I ++ ++R
Sbjct: 245 LVLTKSAAEEIESKLSEHLHR 265
>gi|347533197|ref|YP_004839960.1| 50S ribosomal protein L4 [Roseburia hominis A2-183]
gi|345503345|gb|AEN98028.1| 50S ribosomal protein L4 [Roseburia hominis A2-183]
Length = 206
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 117/200 (58%), Gaps = 2/200 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ + L +F V + + ++H V QLA +QGT KT SEV G G+K
Sbjct: 4 VAVYNMEGKEVDSLELNDAIFGVEVNEHLVHMAVLQQLANNRQGTQKAKTRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ G + P PR ++ KLNKK +R LK AL++R AE K
Sbjct: 64 PWRQKGTGHARQGSTRAPQWTHGGVVFAPVPRDYSFKLNKKEKRAALKSALTSRVAENKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V ++L++ KTK V ++ K +++ + ++ + + N+ V + LN
Sbjct: 124 IVLDELKLDEIKTKKFVEVMKNLKVEKALVVLNDMDVN--VIKSADNVPTVKTAQTNELN 181
Query: 281 VYSILQHDTLVMSRDAVNKI 300
V+ +L++DT+V+++DAV I
Sbjct: 182 VFDVLKYDTVVVTKDAVKTI 201
>gi|3122740|sp|O06114.1|RL4_MYCSM RecName: Full=50S ribosomal protein L4
gi|2113890|emb|CAA73669.1| ribosomal protein L4 [Mycobacterium smegmatis]
Length = 215
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 114/191 (59%), Gaps = 2/191 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++FDV ++H+VV QLA ++QGTHSTKT EVSG GKKP+RQKG+GRAR
Sbjct: 16 GSVELPAELFDVEPNIALMHQVVTAQLAAKRQGTHSTKTRGEVSGGGKKPYRQKGSGRAR 75
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL-LVFEDLEVPS 230
G+ R PQF GG T+HGPKPR ++ + KK+ L+ ALS RA ++ V E +E +
Sbjct: 76 QGSTRAPQFTGGGTVHGPKPRDYSQRTPKKMIAAALRGALSDRARNDRIHAVTELVEGQT 135
Query: 231 HKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTL 290
TK + + KKVL+ G K + +NL V+V+ LN Y +L D +
Sbjct: 136 PSTKSAKTFLGTLTENKKVLVVIGRTDEVGAK-SVRNLPGVHVISPDQLNTYDVLNADDV 194
Query: 291 VMSRDAVNKIV 301
V S +A+N +
Sbjct: 195 VFSVEALNAYI 205
>gi|292669859|ref|ZP_06603285.1| 50S ribosomal protein L4 [Selenomonas noxia ATCC 43541]
gi|422343342|ref|ZP_16424270.1| 50S ribosomal protein L4/L1 [Selenomonas noxia F0398]
gi|292648656|gb|EFF66628.1| 50S ribosomal protein L4 [Selenomonas noxia ATCC 43541]
gi|355378649|gb|EHG25829.1| 50S ribosomal protein L4/L1 [Selenomonas noxia F0398]
Length = 207
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 116/201 (57%), Gaps = 3/201 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + + G + L + F+V + ++H+ V QLA ++ GTHSTKT V G G+K
Sbjct: 4 VAVYDMSHNQVGEISLNDEFFNVEMNAGLLHQAVVLQLASQRLGTHSTKTRGLVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G+ R P + GG T+ GP PR + + +K RRL LK ALS + G
Sbjct: 64 PWRQKGTGRARAGSTRSPLWVGGGTVFGPHPRKYGFTMPRKQRRLALKCALSDKVRTGDF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQME-NTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGL 279
+V + L+ + KTK V + N K + + ++ ++ +T N+ V + + G+
Sbjct: 124 IVLDQLDFDAPKTKAAVKLLSDFGVNAKSLFITADEAVN--VERSTSNIPGVKAITASGI 181
Query: 280 NVYSILQHDTLVMSRDAVNKI 300
NV+ IL HD L +++DA+ +I
Sbjct: 182 NVFDILHHDKLFITKDAITRI 202
>gi|291562767|emb|CBL41583.1| LSU ribosomal protein L4P [butyrate-producing bacterium SS3/4]
Length = 206
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 116/201 (57%), Gaps = 4/201 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G + L VF V + + ++H V QLA ++QGT KT SEVSG G+K
Sbjct: 4 VSVYNMEGKEVGTIELNDAVFGVEVNEHLVHMAVVAQLANKRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ GG + P PR + I LNKK +R LK AL++R E K
Sbjct: 64 PWRQKGTGHARQGSTRSPQWTGGGMVFAPTPRDYTITLNKKEKRAALKSALTSRVNENKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKK-VLLCDGGCIHEKLKLATQNLHYVNVLPSVGL 279
+V ++L+ KTK N ++ +K V+L D + L+ +N+ V +
Sbjct: 124 VVVDELKFDEVKTKNFKAVMNNLKVSKALVVLADN---DQNTVLSARNIPEVKTSLVNTI 180
Query: 280 NVYSILQHDTLVMSRDAVNKI 300
NV+ IL+++T+V ++ AV I
Sbjct: 181 NVFDILKYNTVVATKAAVASI 201
>gi|256847764|ref|ZP_05553209.1| ribosomal protein L4/L1 [Lactobacillus coleohominis 101-4-CHN]
gi|256715453|gb|EEU30429.1| ribosomal protein L4/L1 [Lactobacillus coleohominis 101-4-CHN]
Length = 207
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 119/198 (60%), Gaps = 4/198 (2%)
Query: 106 FFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
FN+D G + L +F V + ++ + + Q A +QGTH+ K S V G GKKPW
Sbjct: 6 LFNQDGSQNGNIDLNDAIFGVEVNENAEYESIIRQRASLRQGTHAVKNRSAVRGGGKKPW 65
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQKGTGRAR G++R PQFRGG + GP PRS+ +L +KVR+L +K ALS + A+ K +V
Sbjct: 66 RQKGTGRARQGSIRSPQFRGGGIVFGPTPRSYNYRLPRKVRQLAIKSALSQKVADDKFVV 125
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
+ + + KTK + + ++ +KVL+ + L+ +NL VNV+ G+N+
Sbjct: 126 VDSINFDAPKTKEFASVLDNLKVNEKVLIVVTDD-DKNAGLSARNLSKVNVVTPAGVNIL 184
Query: 283 SILQHDTLVMSRDAVNKI 300
+++ +V+++ A++++
Sbjct: 185 NVVDAQKIVITKSALSQV 202
>gi|62296686|sp|P49665.2|RL4_THETH RecName: Full=50S ribosomal protein L4
gi|12056100|emb|CAC21224.1| ribosomal protein L4 [Thermus thermophilus]
Length = 210
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/187 (42%), Positives = 115/187 (61%), Gaps = 7/187 (3%)
Query: 122 DVP--IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
D+P I ++ VVRWQLAKR++GT STKT EV+ +G+K W QK TGRARHG + P
Sbjct: 23 DLPAEINPHLLWEVVRWQLAKRRRGTASTKTRGEVAYSGRKIWPQKHTGRARHGDIGAPI 82
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
F GG + GPKPR ++ L KKVR+ GL +A++ RA EGKLL+ E + + I +
Sbjct: 83 FVGGGVVFGPKPRDYSYTLPKKVRKKGLAMAVADRAREGKLLLVEAFAGVERQDQAIPAW 142
Query: 240 YNQ--MENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAV 297
+ ++ ++ VLL G +E ++ A +NL +V L GLNVY I++ + LVM DA
Sbjct: 143 AKEAGLDGSESVLLVTG---NELVRRAARNLPWVVTLAPEGLNVYDIVRTERLVMDLDAW 199
Query: 298 NKIVDRM 304
+R+
Sbjct: 200 EVFQNRI 206
>gi|407278740|ref|ZP_11107210.1| 50S ribosomal protein L4 [Rhodococcus sp. P14]
gi|452954079|gb|EME59484.1| 50S ribosomal protein L4 [Rhodococcus ruber BKS 20-38]
Length = 227
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/208 (38%), Positives = 119/208 (57%), Gaps = 10/208 (4%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
L + V + G + L ++FD P ++H+VV QLA +QGTH+TKT EV G G
Sbjct: 10 LTLDVKAPGGQTNGTVDLPAEIFDAPANIALLHQVVVAQLAAARQGTHATKTRGEVRGGG 69
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
+KP+RQKGTGRAR G+ R PQF GG T+HGP+PR ++ + KK++ L+ ALS RA
Sbjct: 70 RKPYRQKGTGRARQGSTRAPQFAGGGTVHGPQPRDYSQRTPKKMKAAALRGALSDRARNE 129
Query: 219 KLLVFEDL---EVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKL--ATQNLHYVNV 273
++ V +L + PS TK + ++ + K +LL G E L + QNL V+
Sbjct: 130 RIHVITELVAGQAPS--TKGARTFLAELTDRKNLLLVVG---REDLAAWKSVQNLQNVHA 184
Query: 274 LPSVGLNVYSILQHDTLVMSRDAVNKIV 301
+ LN Y +L D +V S +A+N +
Sbjct: 185 IAPDQLNTYDVLYSDDVVFSVEALNAFI 212
>gi|390363081|ref|XP_792959.3| PREDICTED: 39S ribosomal protein L4, mitochondrial-like
[Strongylocentrotus purpuratus]
Length = 270
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/229 (35%), Positives = 125/229 (54%), Gaps = 4/229 (1%)
Query: 80 LLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLA 139
++ + +L PD T+ Q + + + + G + L VF R DI+HR V WQ
Sbjct: 1 MITSRDLLHPDPTVEPIQAWLETINSLEDNKLGLLDLHPHVFATFPRLDILHRNVLWQRN 60
Query: 140 KRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPK-PRSHAIKL 198
++ K+ +EV G GKKPWRQKGTGRARHG+ R P + GG GP+ PRS+ L
Sbjct: 61 YKRISMAKAKSRAEVRGGGKKPWRQKGTGRARHGSTRSPIWIGGGKALGPRGPRSYWYVL 120
Query: 199 NKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIH 258
+K+R GL++AL+ + + L + + L++PS ++ + + + VL D +
Sbjct: 121 PEKIRAHGLRVALTVKYTQDDLHIVDSLDIPSADPGYLQDLCKERYWGESVLFVDVQDVE 180
Query: 259 E---KLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNKIVDRM 304
E A + NVL + GLNVYS+L+H TLV++ DAVN + R+
Sbjct: 181 EMPLNFLEAVNGIKTFNVLSAEGLNVYSMLKHKTLVLTLDAVNLLEQRL 229
>gi|402570837|ref|YP_006620180.1| 50S ribosomal protein L4 [Desulfosporosinus meridiei DSM 13257]
gi|402252034|gb|AFQ42309.1| 50S ribosomal protein L4, bacterial/organelle [Desulfosporosinus
meridiei DSM 13257]
Length = 207
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 110/199 (55%), Gaps = 1/199 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + L+ ++F + ++H V QLA ++GT S EV G G+K
Sbjct: 4 VQVVNMQGAAVGEIELSDNMFGITPNVHVLHSAVVSQLASERRGTQSALLRGEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G+ R P +RGG + PKPR + KL KKVRRL L ALS++ E +L
Sbjct: 64 PWRQKGTGRARSGSTRSPLWRGGGVIFAPKPRKYGFKLPKKVRRLALYSALSSKVLEQQL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + L + KT+ IV + KK ++ L+ A +N+ V + G+N
Sbjct: 124 IVLDTLSLSEVKTREIVKVLKALNVDKKAIIVMDNADEAVLRSA-RNIEGVKAMDVAGMN 182
Query: 281 VYSILQHDTLVMSRDAVNK 299
+ +L HD LVM++ AV K
Sbjct: 183 IVDLLHHDILVMTKAAVTK 201
>gi|326203895|ref|ZP_08193757.1| ribosomal protein L4/L1e [Clostridium papyrosolvens DSM 2782]
gi|325985993|gb|EGD46827.1| ribosomal protein L4/L1e [Clostridium papyrosolvens DSM 2782]
Length = 207
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 126/204 (61%), Gaps = 6/204 (2%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + +N E G + L +VF + +++H VV QLA ++QGT STKT SEV G
Sbjct: 1 MPKVDLYNMKGEVVGDIQLCDNVFGAEVNNEVLHAVVVNQLANKRQGTQSTKTKSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R Q+ G + GPKPRS+ + KKV+R+ +K AL+++ +
Sbjct: 61 GRKPWRQKGTGRARQGSIRSAQWIKGGIVLGPKPRSYRYTMPKKVKRIAMKSALTSKVSG 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQME-NTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
++ V + L + + KTK +V + ++ ++ +++ D +E + + +N+ +
Sbjct: 121 NEIFVLDALTLEAIKTKSMVGVLSNLKVDSSALIVIDSK--NENIVKSARNIPGIKTAYV 178
Query: 277 VGLNVYSILQHDTLVMSRDAVNKI 300
LNV+ IL++D ++++DAV K+
Sbjct: 179 NTLNVFDILKYDKFIITKDAVEKV 202
>gi|225016284|ref|ZP_03705476.1| hypothetical protein CLOSTMETH_00187 [Clostridium methylpentosum
DSM 5476]
gi|224950959|gb|EEG32168.1| hypothetical protein CLOSTMETH_00187 [Clostridium methylpentosum
DSM 5476]
Length = 207
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 113/200 (56%), Gaps = 1/200 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ + L+ +F + K ++H V LA ++QGT ST T +EV G GKK
Sbjct: 4 VAVMNMAGKEVSKIDLSDAIFGIEPNKAVLHMAVVNYLANQRQGTQSTLTRTEVRGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ G GPKPR ++ LNKKV+RL +K ALSA+A + L
Sbjct: 64 PWRQKGTGHARQGSTRSPQWTHGGVALGPKPRDYSYSLNKKVKRLAMKSALSAKAVDNDL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + + + +KTK ++ + KK L+ + +K A N+ V LN
Sbjct: 124 IVVDSIALAEYKTKEVIKMLGALGADKKALIVLPEMDAKVIKSAA-NIPGVRTTQVNELN 182
Query: 281 VYSILQHDTLVMSRDAVNKI 300
VY IL HD L++ A +KI
Sbjct: 183 VYDILNHDKLIVVEAAAHKI 202
>gi|309777134|ref|ZP_07672097.1| ribosomal protein L4/L1 family protein [Erysipelotrichaceae
bacterium 3_1_53]
gi|308915004|gb|EFP60781.1| ribosomal protein L4/L1 family protein [Erysipelotrichaceae
bacterium 3_1_53]
Length = 209
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/188 (40%), Positives = 107/188 (56%), Gaps = 1/188 (0%)
Query: 114 MVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHG 173
+ LA VF + + I V Q A +QGTH TK +EV G G+KPWRQKGTGRAR G
Sbjct: 17 ITLADTVFGIEPNQQCIFDAVIMQRASMRQGTHDTKNRTEVRGGGRKPWRQKGTGRARQG 76
Query: 174 TLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKT 233
++R Q+RGG + GP PR++ KLNKKVRRL LK ALS + E + V + E+ + KT
Sbjct: 77 SIRATQWRGGGIVFGPTPRNYGYKLNKKVRRLALKSALSEKVLENAMGVVDKFELEAPKT 136
Query: 234 KFIVNYYNQMENTKKVL-LCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVM 292
K + KK L + G E L+ +N+ + +L + GLNVY I+ + +V
Sbjct: 137 KAFNQIVADINAPKKTLFVVSEGEDFENAFLSMRNIPTMMMLTADGLNVYDIVNANKIVF 196
Query: 293 SRDAVNKI 300
+ AV +
Sbjct: 197 TEAAVKDV 204
>gi|433654100|ref|YP_007297808.1| 50S ribosomal protein L4, bacterial/organelle
[Thermoanaerobacterium thermosaccharolyticum M0795]
gi|433292289|gb|AGB18111.1| 50S ribosomal protein L4, bacterial/organelle
[Thermoanaerobacterium thermosaccharolyticum M0795]
Length = 206
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/203 (39%), Positives = 124/203 (61%), Gaps = 8/203 (3%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N E G M L+ +VF V + ++H V LA ++QGTHSTK EV G G K
Sbjct: 4 VAVYNINGEQIGEMELSDNVFGVEVNVPVMHEAVLNYLASQRQGTHSTKRRGEVRGGGIK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+ G + GPKPR ++ + KKV+RL LK ALS++ + ++
Sbjct: 64 PWRQKGTGRARQGSIRAPQWIKGGVVFGPKPRDYSYNIPKKVKRLALKSALSSKVRDNEI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLK---LATQNLHYVNVLPSV 277
+V +D+ + KTK +V+ + N K L+ I E K L+++N+ V + +
Sbjct: 124 IVIDDINIDEPKTKKVVDMLKKF-NVKNALI----VIPEDKKNVVLSSRNIPNVKAVYAN 178
Query: 278 GLNVYSILQHDTLVMSRDAVNKI 300
LN Y +L++D ++++DAVNK+
Sbjct: 179 SLNTYDVLKYDRFIITKDAVNKV 201
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,900,704,203
Number of Sequences: 23463169
Number of extensions: 207080056
Number of successful extensions: 425768
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3324
Number of HSP's successfully gapped in prelim test: 107
Number of HSP's that attempted gapping in prelim test: 419890
Number of HSP's gapped (non-prelim): 3464
length of query: 310
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 168
effective length of database: 9,027,425,369
effective search space: 1516607461992
effective search space used: 1516607461992
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 76 (33.9 bits)