BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021591
(310 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B6IRQ7|RL4_RHOCS 50S ribosomal protein L4 OS=Rhodospirillum centenum (strain ATCC
51521 / SW) GN=rplD PE=3 SV=1
Length = 206
Score = 204 bits (520), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 104/202 (51%), Positives = 135/202 (66%), Gaps = 1/202 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V N NE G + LA +VF +P R+DI+ R+V WQLAKR+QGTH TK ISE++GT KKPW
Sbjct: 5 VKNLNNETVGEIELADEVFGLPTRQDILTRMVLWQLAKRRQGTHKTKGISEIAGTTKKPW 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQKGTGRAR G+ R PQFRGG + GP RSH L KKVR+L LK ALS +AAEGKL V
Sbjct: 65 RQKGTGRARQGSTRSPQFRGGARIFGPVVRSHEHDLTKKVRKLALKTALSTKAAEGKLFV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
E + +HKTK + + T L+ DG + E A +N+ +++VLP G NVY
Sbjct: 125 LEAAKADTHKTKALAAQLKTLGLT-SALIIDGANLDETFVRAARNIPHLDVLPEQGANVY 183
Query: 283 SILQHDTLVMSRDAVNKIVDRM 304
IL+ D LV++R+AV ++ R+
Sbjct: 184 DILRRDVLVLTRNAVEQLEARL 205
>sp|Q2W2J2|RL4_MAGSA 50S ribosomal protein L4 OS=Magnetospirillum magneticum (strain
AMB-1 / ATCC 700264) GN=rplD PE=3 SV=1
Length = 206
Score = 200 bits (509), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 103/202 (50%), Positives = 135/202 (66%), Gaps = 1/202 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V + N+ G + LA ++F VP+R DI+ R V WQLAKRQ G H TKTISE+SGT KKP+
Sbjct: 5 VISLDNQTVGEIELADEIFGVPVRGDILFRAVNWQLAKRQSGNHKTKTISEISGTTKKPF 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
QKG GRAR G+LR QFRGG+T+ GP RSHA L KKVR+L LK ALSA+ A+GKL+V
Sbjct: 65 AQKGGGRARQGSLRSAQFRGGSTIFGPVVRSHAHDLPKKVRKLALKTALSAKVADGKLIV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
+ S KTK + ++ VL DG + LA++N+ YV+VLP+ G NVY
Sbjct: 125 VDAASAGSPKTKDLAARLGKL-GLSSVLFIDGAAVDGNFALASRNIPYVDVLPTQGANVY 183
Query: 283 SILQHDTLVMSRDAVNKIVDRM 304
IL+ DTLV+++DAV + R+
Sbjct: 184 DILRRDTLVLTKDAVAALEARL 205
>sp|Q2RQW1|RL4_RHORT 50S ribosomal protein L4 OS=Rhodospirillum rubrum (strain ATCC
11170 / NCIB 8255) GN=rplD PE=3 SV=1
Length = 206
Score = 200 bits (509), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 102/203 (50%), Positives = 139/203 (68%), Gaps = 1/203 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V +D G + L+ VF +P+R D++HR+VRWQLA+RQ GTH TK ISE+SGT KP+
Sbjct: 5 VKTLDGKDAGSIELSDSVFGLPVRTDLLHRMVRWQLARRQAGTHKTKGISEISGTTAKPF 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
+QKGTG AR G+ R PQFRGG T+ GP RSHA LNKKVR+LGLK ALSA+A G+L+V
Sbjct: 65 KQKGTGHARQGSKRSPQFRGGATIFGPVVRSHAHDLNKKVRKLGLKTALSAKAQAGQLIV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
+ S KTK ++ + +KVL DG ++EK LA +N+ ++VLP G NVY
Sbjct: 125 LDQAISESGKTKDLLAQLKVL-GLEKVLFIDGPEVNEKFALAARNIIGLDVLPQQGANVY 183
Query: 283 SILQHDTLVMSRDAVNKIVDRMH 305
IL+ DTLV++++AV + +R+
Sbjct: 184 DILRRDTLVLTKEAVKHLEERLQ 206
>sp|Q1RHM2|RL4_RICBR 50S ribosomal protein L4 OS=Rickettsia bellii (strain RML369-C)
GN=rplD PE=3 SV=1
Length = 207
Score = 189 bits (481), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 99/203 (48%), Positives = 136/203 (66%), Gaps = 2/203 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ N NE+ G + L D+F V IR DII +VV WQ AK GTH TKT+SEVSGT KKP
Sbjct: 5 ILNLANEEIGEISLNEDIFAVEFIRDDIIKQVVDWQRAKAMAGTHKTKTVSEVSGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG +HGP RSHA KL KKVR+LGL ALS + +EGKLL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVIHGPVVRSHATKLPKKVRKLGLIHALSEKFSEGKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNV 281
V + L++ + KT +VN N+ + K + DG + LA QN++ V+P +G NV
Sbjct: 125 VIDSLKLETPKTSNLVNILNKFQG-KSFFVIDGNEVDVNFSLAAQNIYNTVVVPQIGANV 183
Query: 282 YSILQHDTLVMSRDAVNKIVDRM 304
Y I++H+ +++S++AVN + +R+
Sbjct: 184 YDIIRHEYVLLSQEAVNVLEERL 206
>sp|A8GVB5|RL4_RICB8 50S ribosomal protein L4 OS=Rickettsia bellii (strain OSU 85-389)
GN=rplD PE=3 SV=1
Length = 207
Score = 189 bits (481), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 99/203 (48%), Positives = 136/203 (66%), Gaps = 2/203 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ N NE+ G + L D+F V IR DII +VV WQ AK GTH TKT+SEVSGT KKP
Sbjct: 5 ILNLANEEIGEISLNEDIFAVEFIRDDIIKQVVDWQRAKAMAGTHKTKTVSEVSGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG +HGP RSHA KL KKVR+LGL ALS + +EGKLL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVIHGPVVRSHATKLPKKVRKLGLIHALSEKFSEGKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNV 281
V + L++ + KT +VN N+ + K + DG + LA QN++ V+P +G NV
Sbjct: 125 VIDSLKLETPKTSNLVNILNKFQG-KSFFVIDGNEVDVNFSLAAQNIYNTVVVPQIGANV 183
Query: 282 YSILQHDTLVMSRDAVNKIVDRM 304
Y I++H+ +++S++AVN + +R+
Sbjct: 184 YDIIRHEYVLLSQEAVNVLEERL 206
>sp|Q11HQ3|RL4_MESSB 50S ribosomal protein L4 OS=Mesorhizobium sp. (strain BNC1) GN=rplD
PE=3 SV=1
Length = 206
Score = 187 bits (476), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 97/203 (47%), Positives = 131/203 (64%), Gaps = 1/203 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ VT +D G + ++ ++F + R+DI+HRVVRWQLAKRQQGTH K +E++ TG K
Sbjct: 3 LKVTTLAGKDAGKVEVSDEIFGLDPREDILHRVVRWQLAKRQQGTHKAKGRAEIARTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
+RQKGTGRARH + R PQFRGG HGP P SHA L KKVR LGLK ALSA+A L
Sbjct: 63 MYRQKGTGRARHSSARAPQFRGGGKAHGPVPHSHAHDLPKKVRALGLKHALSAKAKSANL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
++ +DL + KTK +V + ++ T L+ G I K A N+ ++VLP G+N
Sbjct: 123 IIVDDLAIKEAKTKALVESFAKLGVT-NALMIGGAEIDAGFKRAAANIPNIDVLPIQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDR 303
VY IL+ TLV+S+ AV + +R
Sbjct: 182 VYDILRRGTLVLSKAAVEALEER 204
>sp|Q68W79|RL4_RICTY 50S ribosomal protein L4 OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=rplD PE=3 SV=1
Length = 207
Score = 184 bits (467), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 94/203 (46%), Positives = 134/203 (66%), Gaps = 2/203 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEVSGT KKP
Sbjct: 5 ILSLANEEVGEITLNKDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVSGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGPK RSHAIKL KKVR+LGL ALS + A GKLL
Sbjct: 65 FKQKGTGNARQGSLRSIQMRGGGISHGPKVRSHAIKLPKKVRKLGLIHALSEKCAAGKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNV 281
+ L++ KT +VN N+ + + + DG + LAT+N++ ++P +G NV
Sbjct: 125 IINSLKLEKPKTSVLVNLLNKFQG-QSFFIIDGNKVDTNFSLATKNIYNTLIVPQIGANV 183
Query: 282 YSILQHDTLVMSRDAVNKIVDRM 304
Y I++H+ +++S++AV+ + +R+
Sbjct: 184 YDIIRHEYVLLSQEAVSFLEERL 206
>sp|Q4UMS8|RL4_RICFE 50S ribosomal protein L4 OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=rplD PE=3 SV=1
Length = 207
Score = 183 bits (465), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 94/203 (46%), Positives = 134/203 (66%), Gaps = 2/203 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEVSGT KKP
Sbjct: 5 ILSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVSGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGP+ RSHA KL KKVR+LGL ALS + AEGKLL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKFAEGKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNV 281
V + L++ KT +VN N+ + K + DG + LA +N++ ++P +G NV
Sbjct: 125 VIDSLKLDKPKTSVLVNILNKFQG-KSFFVIDGNEVDTNFSLAAKNIYNTVIVPQIGANV 183
Query: 282 YSILQHDTLVMSRDAVNKIVDRM 304
Y I++H+ +++S++AV+ + +R+
Sbjct: 184 YDIIRHEYVLLSQEAVSVLEERL 206
>sp|A8EZL5|RL4_RICCK 50S ribosomal protein L4 OS=Rickettsia canadensis (strain McKiel)
GN=rplD PE=3 SV=1
Length = 207
Score = 183 bits (464), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 94/203 (46%), Positives = 134/203 (66%), Gaps = 2/203 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEVSGT KKP
Sbjct: 5 ILSLANEEVGEISLNKDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVSGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGP RSHA +L KKVR+LGL ALS + AEGKLL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGLAHGPIVRSHATQLPKKVRKLGLIHALSEKFAEGKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNV 281
V + L++ KT F+VN N+ + + + DG + LA +N++ ++P +G NV
Sbjct: 125 VIDSLKLDKPKTSFLVNILNKFQG-QSFFVIDGNEVDINFSLAAKNIYNTVIVPQIGANV 183
Query: 282 YSILQHDTLVMSRDAVNKIVDRM 304
Y I++H+ +++S++AVN + +R+
Sbjct: 184 YDIIRHEYVLLSQEAVNVLEERL 206
>sp|A8GT68|RL4_RICRS 50S ribosomal protein L4 OS=Rickettsia rickettsii (strain Sheila
Smith) GN=rplD PE=3 SV=1
Length = 207
Score = 180 bits (457), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 94/203 (46%), Positives = 133/203 (65%), Gaps = 2/203 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEV GT KKP
Sbjct: 5 ILSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGP+ RSHA KL KKVR+LGL ALS + AEGKLL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKCAEGKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNV 281
V + L++ KT +VN N+ + K + DG + LA +N++ V+P +G NV
Sbjct: 125 VIDSLKLDKPKTSALVNILNKFQG-KSFFVIDGNEVDINFSLAAKNIYNTVVVPQIGANV 183
Query: 282 YSILQHDTLVMSRDAVNKIVDRM 304
Y I++H+ +++S++AV+ + +R+
Sbjct: 184 YDIIRHEYVLLSQEAVSVLEERL 206
>sp|B0BUQ9|RL4_RICRO 50S ribosomal protein L4 OS=Rickettsia rickettsii (strain Iowa)
GN=rplD PE=3 SV=1
Length = 207
Score = 180 bits (457), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 94/203 (46%), Positives = 133/203 (65%), Gaps = 2/203 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEV GT KKP
Sbjct: 5 ILSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGP+ RSHA KL KKVR+LGL ALS + AEGKLL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKCAEGKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNV 281
V + L++ KT +VN N+ + K + DG + LA +N++ V+P +G NV
Sbjct: 125 VIDSLKLDKPKTSALVNILNKFQG-KSFFVIDGNEVDINFSLAAKNIYNTVVVPQIGANV 183
Query: 282 YSILQHDTLVMSRDAVNKIVDRM 304
Y I++H+ +++S++AV+ + +R+
Sbjct: 184 YDIIRHEYVLLSQEAVSVLEERL 206
>sp|C4K2H8|RL4_RICPU 50S ribosomal protein L4 OS=Rickettsia peacockii (strain Rustic)
GN=rplD PE=3 SV=1
Length = 207
Score = 180 bits (457), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 93/203 (45%), Positives = 133/203 (65%), Gaps = 2/203 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEV GT KKP
Sbjct: 5 ILSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGP+ RSHA KL KKVR+LGL ALS + AEGKLL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKCAEGKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNV 281
V + L++ KT +VN N+ + K + DG + LA +N++ ++P +G NV
Sbjct: 125 VIDSLKLDKPKTSVLVNILNKFQG-KSFFVIDGNEVDINFSLAAKNIYNTVIVPQIGANV 183
Query: 282 YSILQHDTLVMSRDAVNKIVDRM 304
Y I++H+ +++S++AV+ + +R+
Sbjct: 184 YDIIRHEYVLLSQEAVSVLEERL 206
>sp|Q92GW7|RL4_RICCN 50S ribosomal protein L4 OS=Rickettsia conorii (strain ATCC VR-613
/ Malish 7) GN=rplD PE=3 SV=1
Length = 207
Score = 180 bits (456), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 93/203 (45%), Positives = 133/203 (65%), Gaps = 2/203 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEV GT KKP
Sbjct: 5 ILSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGP+ RSHA KL KKVR+LGL ALS + AEGKLL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKCAEGKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNV 281
V + L++ KT +VN N+ + K + DG + LA +N++ ++P +G NV
Sbjct: 125 VIDSLKLDKPKTSALVNILNKFQG-KSFFVIDGNEVDINFSLAAKNIYNTVIVPQIGANV 183
Query: 282 YSILQHDTLVMSRDAVNKIVDRM 304
Y I++H+ +++S++AV+ + +R+
Sbjct: 184 YDIIRHEYVLLSQEAVSVLEERL 206
>sp|C3PPA6|RL4_RICAE 50S ribosomal protein L4 OS=Rickettsia africae (strain ESF-5)
GN=rplD PE=3 SV=1
Length = 207
Score = 179 bits (455), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 93/198 (46%), Positives = 131/198 (66%), Gaps = 2/198 (1%)
Query: 108 NEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKG 166
NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEV GT KKP++QKG
Sbjct: 10 NEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGTTKKPFKQKG 69
Query: 167 TGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL 226
TG AR G+LR Q RGG HGP+ RSHA KL KKVR+LGL ALS + AEGKLLV + L
Sbjct: 70 TGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKCAEGKLLVIDSL 129
Query: 227 EVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQ 286
++ KT +VN N+ + K + DG + LA +N++ ++P +G NVY I++
Sbjct: 130 KLDKPKTSALVNILNKFQG-KSFFVIDGNEVDINFSLAAKNIYNTVIVPQIGANVYDIIR 188
Query: 287 HDTLVMSRDAVNKIVDRM 304
H+ +++S++AV+ + +R+
Sbjct: 189 HEYVLLSQEAVSVLEERL 206
>sp|Q9ZCQ6|RL4_RICPR 50S ribosomal protein L4 OS=Rickettsia prowazekii (strain Madrid E)
GN=rplD PE=3 SV=1
Length = 207
Score = 179 bits (455), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 93/203 (45%), Positives = 135/203 (66%), Gaps = 2/203 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEVSGT KKP
Sbjct: 5 ILSLANEEVGEITLNKDIFAVEFIRDDIIKQVIDWQRAKAMFGNHKTKTVSEVSGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGPK RSHAIKL KKVR+LGL ALS + AE KLL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGISHGPKVRSHAIKLPKKVRKLGLIHALSEKYAEEKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNV 281
+ + L++ KT +VN ++ + + + DG + LAT+N++ ++P +G NV
Sbjct: 125 IIDSLKLDKPKTSILVNLLSKFQG-QSFFVIDGNKVDINFSLATKNIYNTLIVPQIGANV 183
Query: 282 YSILQHDTLVMSRDAVNKIVDRM 304
Y I++H+ +++S++AV+ + +R+
Sbjct: 184 YDIIRHEYVLLSQEAVSFLEERL 206
>sp|Q2GL58|RL4_ANAPZ 50S ribosomal protein L4 OS=Anaplasma phagocytophilum (strain HZ)
GN=rplD PE=3 SV=1
Length = 208
Score = 177 bits (449), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 92/204 (45%), Positives = 125/204 (61%), Gaps = 1/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N NE G + L VF + R+D++ VV WQLAKR+ GTH K IS++SGT K
Sbjct: 3 VNIVNIANEVVGSIDLNPQVFGLEPRRDVLKEVVNWQLAKRRAGTHKAKGISDISGTTAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQK TGRAR G+LR PQFRGG + GP PRSH LNKKVRRLGLK+ALS + A KL
Sbjct: 63 PYRQKHTGRARQGSLRSPQFRGGAVIFGPVPRSHEYSLNKKVRRLGLKVALSMKVAANKL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + L+V KT + L+ C E ++ A +NL V++L VG+N
Sbjct: 123 VVLDSLDVDLKKTADAKGVFGNFAGHSSYLVVSESCKEEVVR-ACRNLRGVDLLKCVGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
V IL+HD ++++ D V + R+
Sbjct: 182 VLDILKHDCVILTVDTVKSLEGRL 205
>sp|A8GPE9|RL4_RICAH 50S ribosomal protein L4 OS=Rickettsia akari (strain Hartford)
GN=rplD PE=3 SV=1
Length = 207
Score = 176 bits (446), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 89/203 (43%), Positives = 133/203 (65%), Gaps = 2/203 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L D+F V IR D+I +V+ WQ AK G H TKT+SEVSGT KKP
Sbjct: 5 ILSLANEEVGEISLNEDIFAVEFIRDDVIKQVIDWQRAKAMSGNHKTKTVSEVSGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGP+ RSH KL KKVR+LGL ALS + AEG+LL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHVTKLPKKVRKLGLIHALSEKFAEGRLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNV 281
V + L++ KT +VN ++ + K + DG + LA +N++ ++P +G NV
Sbjct: 125 VIDSLKLDQPKTSALVNILSKFQG-KSFFVIDGNEVDTNFSLAAKNIYNTAIVPQIGANV 183
Query: 282 YSILQHDTLVMSRDAVNKIVDRM 304
Y I++++ +++S++AV+ + +R+
Sbjct: 184 YDIIRYEYVLLSQEAVSVLEERL 206
>sp|C3MAY1|RL4_RHISN 50S ribosomal protein L4 OS=Rhizobium sp. (strain NGR234) GN=rplD
PE=3 SV=1
Length = 206
Score = 175 bits (444), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 126/203 (62%), Gaps = 1/203 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V +D G + L+ +F + R+DII RVVRWQLAKRQQGTH K +EV+ TG K
Sbjct: 3 LTVKTLEGKDAGKVSLSDAIFGLEPREDIIARVVRWQLAKRQQGTHKAKGRAEVARTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP RSHA L KKVR LGL+ ALSA+ ++
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPKKVRALGLRHALSAKLKAEEI 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V +DL KTK + + + T L+ G I KLA QN+ V+VLP G+N
Sbjct: 123 IVLDDLVANEAKTKALAGAFASLGLT-NALIIGGAEIENNFKLAAQNIPNVDVLPVQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDR 303
VY IL+ LV+S+ AV + +R
Sbjct: 182 VYDILRRGKLVLSKAAVEALEER 204
>sp|A6U860|RL4_SINMW 50S ribosomal protein L4 OS=Sinorhizobium medicae (strain WSM419)
GN=rplD PE=3 SV=1
Length = 206
Score = 174 bits (442), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 126/203 (62%), Gaps = 1/203 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V +D G + L+ +F + R+DII RVVRWQLAKRQQGTH K +EVS TG K
Sbjct: 3 LTVKTLEGKDAGKVSLSDAIFGLEPREDIIARVVRWQLAKRQQGTHKAKGRAEVSRTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP RSHA L KKVR LGL+ ALSA+ ++
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPKKVRALGLRHALSAKLKAEEI 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
++ +DL KTK + + + T L+ G I KLA QN+ V+VLP G+N
Sbjct: 123 IIVDDLVANEAKTKALAGAFASLGLT-NALIIGGAEIEGNFKLAAQNIPNVDVLPVQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDR 303
VY IL+ LV+S+ AV + +R
Sbjct: 182 VYDILRRGKLVLSKAAVEALEER 204
>sp|Q92QG9|RL4_RHIME 50S ribosomal protein L4 OS=Rhizobium meliloti (strain 1021)
GN=rplD PE=3 SV=1
Length = 206
Score = 174 bits (442), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 96/204 (47%), Positives = 126/204 (61%), Gaps = 1/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V +D G + L+ +F + R+DII RVVRWQLAKRQQGTH +K +EVS TG K
Sbjct: 3 LTVKTLEGKDAGKVSLSDAIFGLEPREDIIARVVRWQLAKRQQGTHKSKGRAEVSRTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP RSHA L KK+R LGL+ ALSA+ +
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPKKIRALGLRHALSAKLKAEDI 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V +DL KTK + + + T L+ G I KLA QN+ V+VLP G+N
Sbjct: 123 IVIDDLVANEAKTKALAGAFASLGLT-NALIIGGAEIEGNFKLAAQNIPNVDVLPVQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL+ LV+S+ AV + +R
Sbjct: 182 VYDILRRGKLVLSKAAVEALEERF 205
>sp|A7IFY2|RL4_XANP2 50S ribosomal protein L4 OS=Xanthobacter autotrophicus (strain ATCC
BAA-1158 / Py2) GN=rplD PE=3 SV=1
Length = 206
Score = 174 bits (441), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 90/204 (44%), Positives = 130/204 (63%), Gaps = 1/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I V + G + L+ ++F + R DI+HR V WQL++RQ GTH TK SE++ T KK
Sbjct: 3 ITVKTLDGIEAGSVTLSDEIFGLEPRADILHRCVTWQLSRRQAGTHRTKGRSEINRTSKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTG ARHG PQFRGG GP RSHAI L KKVR L LK ALS++A ++
Sbjct: 63 MYKQKGTGNARHGAASAPQFRGGGRAFGPVVRSHAIDLPKKVRALALKHALSSKAKAAQI 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + + + KTK + ++ ++ + VL+ DG + + + LA +NL YV+VLP G+N
Sbjct: 123 IVLDKVSLDDPKTKALKEHFAKL-GLESVLIVDGAQVEQNVALAARNLPYVDVLPIQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL+ DTLV+++ AV+ + R
Sbjct: 182 VYDILRRDTLVLTKAAVDALEARF 205
>sp|B9KL92|RL4_RHOSK 50S ribosomal protein L4 OS=Rhodobacter sphaeroides (strain KD131 /
KCTC 12085) GN=rplD PE=3 SV=1
Length = 206
Score = 172 bits (437), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/193 (48%), Positives = 122/193 (63%), Gaps = 1/193 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +F + R DI+HRVVRWQ AK Q GTHS S+VS + KK +RQKGTG AR
Sbjct: 14 GSIELDDAIFGLEPRADILHRVVRWQRAKAQAGTHSVLGKSDVSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG+ + P FR G GP PRSHA LNKK R LGLK ALS++A G L+V ED+ +
Sbjct: 74 HGSKKAPIFRHGGVYKGPTPRSHAHDLNKKFRALGLKHALSSKATTGNLIVLEDIALAEG 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KT + ++ K+VL+ DG I+E A +NL V+VLPS+G NVY IL+ DTLV
Sbjct: 134 KTAMLAKAVKEL-GWKRVLVIDGADINENFAKAARNLEGVDVLPSIGANVYDILKRDTLV 192
Query: 292 MSRDAVNKIVDRM 304
+++ V + R+
Sbjct: 193 ITKAGVEALEARL 205
>sp|Q3J5S1|RL4_RHOS4 50S ribosomal protein L4 OS=Rhodobacter sphaeroides (strain ATCC
17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rplD PE=3 SV=1
Length = 206
Score = 172 bits (437), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/193 (48%), Positives = 122/193 (63%), Gaps = 1/193 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +F + R DI+HRVVRWQ AK Q GTHS S+VS + KK +RQKGTG AR
Sbjct: 14 GSIELDDAIFGLEPRADILHRVVRWQRAKAQAGTHSVLGKSDVSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG+ + P FR G GP PRSHA LNKK R LGLK ALS++A G L+V ED+ +
Sbjct: 74 HGSKKAPIFRHGGVYKGPTPRSHAHDLNKKFRALGLKHALSSKATTGNLIVLEDIALAEG 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KT + ++ K+VL+ DG I+E A +NL V+VLPS+G NVY IL+ DTLV
Sbjct: 134 KTAMLAKAVKEL-GWKRVLVIDGADINENFAKAARNLEGVDVLPSIGANVYDILKRDTLV 192
Query: 292 MSRDAVNKIVDRM 304
+++ V + R+
Sbjct: 193 ITKAGVEALEARL 205
>sp|A3PGL2|RL4_RHOS1 50S ribosomal protein L4 OS=Rhodobacter sphaeroides (strain ATCC
17029 / ATH 2.4.9) GN=rplD PE=3 SV=1
Length = 206
Score = 172 bits (437), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/193 (48%), Positives = 122/193 (63%), Gaps = 1/193 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +F + R DI+HRVVRWQ AK Q GTHS S+VS + KK +RQKGTG AR
Sbjct: 14 GSIELDDAIFGLEPRADILHRVVRWQRAKAQAGTHSVLGKSDVSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG+ + P FR G GP PRSHA LNKK R LGLK ALS++A G L+V ED+ +
Sbjct: 74 HGSKKAPIFRHGGVYKGPTPRSHAHDLNKKFRALGLKHALSSKATTGNLIVLEDIALAEG 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KT + ++ K+VL+ DG I+E A +NL V+VLPS+G NVY IL+ DTLV
Sbjct: 134 KTAMLAKAVKEL-GWKRVLVIDGADINENFAKAARNLEGVDVLPSIGANVYDILKRDTLV 192
Query: 292 MSRDAVNKIVDRM 304
+++ V + R+
Sbjct: 193 ITKAGVEALEARL 205
>sp|Q5FTY4|RL4_GLUOX 50S ribosomal protein L4 OS=Gluconobacter oxydans (strain 621H)
GN=rplD PE=3 SV=1
Length = 204
Score = 172 bits (437), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/202 (47%), Positives = 123/202 (60%), Gaps = 3/202 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+ N G + L ++F V R DI+ RVV WQLAKR+ GTH TK + E+SGT KKP+
Sbjct: 5 IKTLDNGSAGSVALPEEIFAVTPRSDIMARVVHWQLAKRRAGTHRTKGMGEISGTTKKPY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQKGTG AR G+LR PQFR G +HGP R H L KKVRRLGL ALS +AAEGKL+V
Sbjct: 65 RQKGTGSARQGSLRAPQFRTGGVVHGPVVRDHGYDLPKKVRRLGLICALSQKAAEGKLIV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
D KT+ + T L+ D G + E+ A NL ++VLP++G NVY
Sbjct: 125 L-DAANGVTKTREAAAKIKALGWT-SALIVD-GAVDEQFARAIANLPKIDVLPTIGANVY 181
Query: 283 SILQHDTLVMSRDAVNKIVDRM 304
IL HD LV++R + + +R+
Sbjct: 182 DILNHDVLVITRAGLEGLKERL 203
>sp|A4WVK7|RL4_RHOS5 50S ribosomal protein L4 OS=Rhodobacter sphaeroides (strain ATCC
17025 / ATH 2.4.3) GN=rplD PE=3 SV=1
Length = 206
Score = 172 bits (437), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 92/193 (47%), Positives = 122/193 (63%), Gaps = 1/193 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +F + R DI+HRVVRWQ AK Q GTHS S+VS + KK +RQKGTG AR
Sbjct: 14 GSIELDDAIFGLEPRADILHRVVRWQRAKAQAGTHSVLGKSDVSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG+ + P FR G GP PRSHA LNKK R LGLK ALS++A G L+V ED+ +
Sbjct: 74 HGSKKAPIFRHGGVYKGPTPRSHAHDLNKKFRALGLKHALSSKATTGNLIVIEDIAMSEA 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KT + ++ K+VL+ DG I+E A +NL ++VLPS+G NVY IL+ DTLV
Sbjct: 134 KTALLAKAVKEL-GWKRVLVIDGADINENFAKAARNLEGIDVLPSIGANVYDILKRDTLV 192
Query: 292 MSRDAVNKIVDRM 304
+++ V + R+
Sbjct: 193 ITKAGVEALEARL 205
>sp|Q98N56|RL4_RHILO 50S ribosomal protein L4 OS=Rhizobium loti (strain MAFF303099)
GN=rplD PE=3 SV=1
Length = 206
Score = 172 bits (436), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 89/203 (43%), Positives = 129/203 (63%), Gaps = 1/203 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ +T +D G + L+ ++F + R+DI+ RVVRWQLAK+QQGTH K +E++ TG K
Sbjct: 3 LKITTLGGKDAGKVKLSEEIFGLDPREDILQRVVRWQLAKKQQGTHKAKGRAEIARTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP RSH L K VR LGLK ALSA+A +
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKNVRALGLKHALSAKAKSASI 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V ++L++ KTK ++ + + L+ G + + KLA N+ ++VLP G+N
Sbjct: 123 IVIDELKLTEAKTKALIANFATL-GLSNALVIGGAELDKNFKLAATNIPNIDVLPIQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDR 303
VY IL+ TLV+S+ AV + +R
Sbjct: 182 VYDILRRGTLVLSKAAVEALEER 204
>sp|B6JET4|RL4_OLICO 50S ribosomal protein L4 OS=Oligotropha carboxidovorans (strain
ATCC 49405 / DSM 1227 / OM5) GN=rplD PE=3 SV=1
Length = 206
Score = 172 bits (435), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 91/206 (44%), Positives = 132/206 (64%), Gaps = 1/206 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + VT + G + L+ +F + R DII RVV WQLAKRQ GTH TK +E++ TG
Sbjct: 1 MELNVTTLEGKAAGSVNLSDTIFGLEPRTDIIQRVVNWQLAKRQAGTHKTKGRAEIARTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP RSHA L KKVR LGL+ ALSA+A +G
Sbjct: 61 KKMYKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHAYDLPKKVRALGLRHALSAKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
L+V ++ E+ KTK ++ +++ + T L+ DG ++ A +N+ +++VLP G
Sbjct: 121 SLVVLDNAELKDAKTKALIGHFSGLGLT-SALIVDGAEVNNGFAQAARNIPHIDVLPIQG 179
Query: 279 LNVYSILQHDTLVMSRDAVNKIVDRM 304
+NVY IL+ LV+++ AV+ + R
Sbjct: 180 INVYDILRRQKLVLTKAAVDALEARF 205
>sp|A9H3R2|RL4_GLUDA 50S ribosomal protein L4 OS=Gluconacetobacter diazotrophicus
(strain ATCC 49037 / DSM 5601 / PAl5) GN=rplD PE=3 SV=1
Length = 204
Score = 172 bits (435), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 93/202 (46%), Positives = 120/202 (59%), Gaps = 3/202 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+ N G VL ++F V R DI+ RVV WQLAKR+ GTH K + EVSGT KKP+
Sbjct: 5 IKTLDNGSAGTAVLPDEIFGVTPRADIMARVVHWQLAKRRAGTHKVKGMGEVSGTTKKPY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQKGTG AR G+LR PQ+R G +HGP R H L KKVRRLGL ALS +AAEGKL+V
Sbjct: 65 RQKGTGSARQGSLRAPQYRTGGAVHGPVVRDHGYDLPKKVRRLGLISALSQKAAEGKLVV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
D S +T + + K L+ D + E A +NL ++ LP++G NVY
Sbjct: 125 L-DAATASGRTSELAAKVKAL-GWKSALIVD-ATVEENFGRAARNLPKIDALPTIGANVY 181
Query: 283 SILQHDTLVMSRDAVNKIVDRM 304
IL HD L ++R V + +R+
Sbjct: 182 DILNHDVLAITRAGVEGLKERL 203
>sp|Q1GPA0|RL4_SPHAL 50S ribosomal protein L4 OS=Sphingopyxis alaskensis (strain DSM
13593 / LMG 18877 / RB2256) GN=rplD PE=3 SV=1
Length = 208
Score = 171 bits (432), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 87/187 (46%), Positives = 119/187 (63%)
Query: 119 DVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGP 178
DVF + R DI+HRVV WQL KR+ + + S+V+ TGKK RQKG G ARHG R P
Sbjct: 21 DVFGLDARADILHRVVAWQLEKRRGPARAARERSDVARTGKKFGRQKGGGTARHGDRRAP 80
Query: 179 QFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVN 238
F GG HGP+ R+ LNKK+R LGLK+ALS +A GKL+V + LE+ KTK +
Sbjct: 81 IFIGGGKAHGPRARTFGHSLNKKIRTLGLKMALSDKAKGGKLVVIDTLELKDAKTKALAG 140
Query: 239 YYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVN 298
+++ K+ L DG +HE +A+ NL V+ LP++G NVY I++ DTLV++R AV
Sbjct: 141 KLGKLDLGKRALFIDGDAVHESFAMASANLIGVDALPAIGANVYDIVRADTLVLTRAAVE 200
Query: 299 KIVDRMH 305
K+ R +
Sbjct: 201 KLEARCN 207
>sp|Q5GSU5|RL4_WOLTR 50S ribosomal protein L4 OS=Wolbachia sp. subsp. Brugia malayi
(strain TRS) GN=rplD PE=3 SV=1
Length = 204
Score = 170 bits (431), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 86/202 (42%), Positives = 125/202 (61%), Gaps = 3/202 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+ N N D G L +F V + I+H +VRWQLAKR+ GTH K IS+VSGT KP+
Sbjct: 5 LVNLSNNDVGTTQLNPLIFSVEQKLSILHDIVRWQLAKRRAGTHKVKGISDVSGTTAKPY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
QK TGRAR G+LR PQFRGG + GP RSHA LNKKVR+ GLK+ALS + ++++
Sbjct: 65 SQKRTGRARQGSLRSPQFRGGGVIFGPIVRSHAYSLNKKVRKFGLKVALSLKYLNNQVII 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
+L + KT + Y + + +++ D + L A +NLHYVN++ +GLNV+
Sbjct: 125 LNNLNINVKKTSEMCKYIQNFKFSSFLIVGD---YEDSLLRAARNLHYVNLIKPIGLNVF 181
Query: 283 SILQHDTLVMSRDAVNKIVDRM 304
IL H+ ++++ DA+ + R+
Sbjct: 182 DILNHECIMLTSDALRYLEGRL 203
>sp|Q8UE19|RL4_AGRT5 50S ribosomal protein L4 OS=Agrobacterium tumefaciens (strain C58 /
ATCC 33970) GN=rplD PE=3 SV=1
Length = 206
Score = 170 bits (431), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/205 (45%), Positives = 128/205 (62%), Gaps = 1/205 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + V +D G + L+ ++F + R+DI+ R+VRWQLAK+QQGTH TK SEVS TG
Sbjct: 1 MELNVKTLEGKDAGKVSLSDEIFGLDPRQDILARMVRWQLAKKQQGTHKTKNRSEVSRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
K ++QKGTGRARH + R PQFRGG HGP RSHA L KKVR L L+ ALSA+
Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPKKVRALALRHALSAKLKAE 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
+L++ + L KTK ++ + + T L+ G + KLA QN+ V+VLP G
Sbjct: 121 ELIIVDQLVASEAKTKALLGSFASLGLT-NALVIGGAELDGNFKLAAQNIPNVDVLPVQG 179
Query: 279 LNVYSILQHDTLVMSRDAVNKIVDR 303
+NVY IL+ LV+S+ AV + +R
Sbjct: 180 INVYDILRRGKLVLSKAAVEALEER 204
>sp|P61061|RL4_BDEBA 50S ribosomal protein L4 OS=Bdellovibrio bacteriovorus (strain ATCC
15356 / DSM 50701 / NCIB 9529 / HD100) GN=rplD PE=3 SV=1
Length = 209
Score = 170 bits (430), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/203 (45%), Positives = 127/203 (62%), Gaps = 3/203 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N+ E G + LA DVF+ P++K+++H VV+WQLA R+QGTH TKT VSG GKK
Sbjct: 4 VNVLNWKKEKVGSVELAADVFETPVKKEVLHTVVQWQLAARRQGTHMTKTKGLVSGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P++QKGTG AR G+ R GG T GP+PRS+A L KKVRRLGL +ALS EGKL
Sbjct: 64 PFKQKGTGGARQGSSRSILMPGGGTAFGPQPRSYAFVLPKKVRRLGLSMALSHLQKEGKL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+ + + + +N Q KK +L D + +K A++NL P GLN
Sbjct: 124 FIVDSMASEGKTAE--LNKRLQAFGLKKAVLVD-SVVDDKFNRASKNLPTFKYFPVEGLN 180
Query: 281 VYSILQHDTLVMSRDAVNKIVDR 303
V+ +L++D V+++D+V KIVDR
Sbjct: 181 VFDLLKYDAAVITKDSVAKIVDR 203
>sp|Q5FFU1|RL4_EHRRG 50S ribosomal protein L4 OS=Ehrlichia ruminantium (strain Gardel)
GN=rplD PE=3 SV=1
Length = 205
Score = 170 bits (430), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 89/204 (43%), Positives = 129/204 (63%), Gaps = 2/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N +++ G + L +F V R DI+ VV WQL+KR+ G H TKTI +VSGT K
Sbjct: 3 VNVINIESQNIGKIDLNPLIFSVNYRPDILKMVVEWQLSKRRVGAHKTKTIGDVSGTTAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQK TGRAR G+LR PQFRGG + GP RSHA LNKKVR LGLK+ALS + + KL
Sbjct: 63 PYRQKHTGRARQGSLRSPQFRGGAVIFGPVVRSHAYSLNKKVRNLGLKVALSLKNSCNKL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
L+ + ++V KT ++ + E+ + L G ++ + + +NLH V +L +G N
Sbjct: 123 LILDSIDVNFVKTAQVLRFIKNFEH--QSFLIIGKDYNKGMMYSCKNLHNVTLLKQIGTN 180
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
V+ IL+HD ++++ D V + DR+
Sbjct: 181 VFDILRHDCVILTVDTVKYLEDRL 204
>sp|A9IW26|RL4_BART1 50S ribosomal protein L4 OS=Bartonella tribocorum (strain CIP
105476 / IBS 506) GN=rplD PE=3 SV=1
Length = 206
Score = 169 bits (429), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/207 (44%), Positives = 132/207 (63%), Gaps = 3/207 (1%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
DLVI + + G + ++ +FD+ R+DI+ RVVRWQLA+RQQGTH ++ S+VS T
Sbjct: 2 DLVIKTLD--GHEAGKLKVSESIFDLVPREDILQRVVRWQLARRQQGTHQSQGRSDVSRT 59
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G K ++QKGTGRARH + R PQFRGG HGP RSHA L KK+R LGL++ALSA+
Sbjct: 60 GAKMFKQKGTGRARHSSARAPQFRGGGKAHGPVFRSHAHDLPKKIRALGLRLALSAKLKA 119
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
L+V ++L V KTK +V++++++ LL G I A N+ ++VLP
Sbjct: 120 KDLIVVDELAVKDAKTKKLVSHFSKL-GFNNALLIGGQEIDINFFRAASNIPNIDVLPIQ 178
Query: 278 GLNVYSILQHDTLVMSRDAVNKIVDRM 304
G+NVY IL+ LV+S+ AV + +R
Sbjct: 179 GINVYDILRRSKLVLSKAAVEALEERF 205
>sp|Q5HAS3|RL4_EHRRW 50S ribosomal protein L4 OS=Ehrlichia ruminantium (strain
Welgevonden) GN=rplD PE=3 SV=1
Length = 205
Score = 169 bits (427), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 88/204 (43%), Positives = 129/204 (63%), Gaps = 2/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N +++ G + L +F V R DI+ VV WQL+KR+ G H TKTI +VSGT K
Sbjct: 3 VNVINIESQNIGKIDLNPLIFSVNYRPDILKMVVEWQLSKRRIGAHKTKTIGDVSGTTAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQK TGRAR G+LR PQFRGG + GP R+HA LNKKVR LGLK+ALS + + KL
Sbjct: 63 PYRQKHTGRARQGSLRSPQFRGGAVIFGPVVRTHAYSLNKKVRNLGLKVALSLKNSCNKL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
L+ + ++V KT ++ + E+ + L G ++ + + +NLH V +L +G N
Sbjct: 123 LILDSIDVNFVKTAQVLRFIKNFEH--QSFLIIGKDYNKGMMYSCKNLHNVTLLKQIGTN 180
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
V+ IL+HD ++++ D V + DR+
Sbjct: 181 VFDILRHDCVILTVDTVKYLEDRL 204
>sp|Q5PA59|RL4_ANAMM 50S ribosomal protein L4 OS=Anaplasma marginale (strain St. Maries)
GN=rplD PE=3 SV=1
Length = 208
Score = 167 bits (424), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 91/205 (44%), Positives = 131/205 (63%), Gaps = 3/205 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N NE G + L+ +VF V +R+D++ VV WQLAKR+ GTH T+ IS+VSGT K
Sbjct: 3 VNVVNIKNEVVGKVQLSAEVFGVQLRRDVLRDVVTWQLAKRRAGTHKTRCISDVSGTTAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQK TGRAR G+LR PQFRGG + GP RSHA LNKKVRRLGLK+ALS + ++ KL
Sbjct: 63 PYRQKHTGRARQGSLRSPQFRGGAVVFGPVNRSHAYSLNKKVRRLGLKVALSMKVSDSKL 122
Query: 221 LVFEDLEVPSHKTKFI-VNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGL 279
+V +D + KT V + N + +++ + +K+ A +NL V++L G+
Sbjct: 123 VVLDDSGLLLEKTADAHVAFGNFGAHGSYLVVAE--TYEDKVMCACRNLPNVDLLKYAGI 180
Query: 280 NVYSILQHDTLVMSRDAVNKIVDRM 304
NV IL+HD ++++ V + R+
Sbjct: 181 NVLDILRHDCVILTVGTVKCLESRL 205
>sp|B9KJ69|RL4_ANAMF 50S ribosomal protein L4 OS=Anaplasma marginale (strain Florida)
GN=rplD PE=3 SV=1
Length = 208
Score = 167 bits (424), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 91/205 (44%), Positives = 131/205 (63%), Gaps = 3/205 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N NE G + L+ +VF V +R+D++ VV WQLAKR+ GTH T+ IS+VSGT K
Sbjct: 3 VNVVNIKNEVVGKVQLSAEVFGVQLRRDVLRDVVTWQLAKRRAGTHKTRCISDVSGTTAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQK TGRAR G+LR PQFRGG + GP RSHA LNKKVRRLGLK+ALS + ++ KL
Sbjct: 63 PYRQKHTGRARQGSLRSPQFRGGAVVFGPVNRSHAYSLNKKVRRLGLKVALSMKVSDSKL 122
Query: 221 LVFEDLEVPSHKTKFI-VNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGL 279
+V +D + KT V + N + +++ + +K+ A +NL V++L G+
Sbjct: 123 VVLDDSGLLLEKTADAHVAFGNFGAHGSYLVVAE--TYEDKVMCACRNLPNVDLLKYAGI 180
Query: 280 NVYSILQHDTLVMSRDAVNKIVDRM 304
NV IL+HD ++++ V + R+
Sbjct: 181 NVLDILRHDCVILTVGTVKCLESRL 205
>sp|Q1QN29|RL4_NITHX 50S ribosomal protein L4 OS=Nitrobacter hamburgensis (strain X14 /
DSM 10229) GN=rplD PE=3 SV=1
Length = 206
Score = 167 bits (424), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 91/206 (44%), Positives = 127/206 (61%), Gaps = 1/206 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + VT G + L+ +F + RKD+I R V WQLAKRQ GTH TK +E+ TG
Sbjct: 1 MELNVTTLEGNAAGSVQLSDGIFGLEPRKDLIQRCVNWQLAKRQAGTHKTKGRAEIWRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP RSHA L KKVR L L+ ALSA+A +G
Sbjct: 61 KKMFKQKGTGNARHGSARVPQFRGGGRAFGPVVRSHAHDLPKKVRALALRHALSAKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
L+V + E+ KTK +V +++ + T L+ DG +H A +N+ ++VLP G
Sbjct: 121 GLIVIDSAELNEAKTKALVGHFSGLGLT-NALIVDGAAVHAGFATAARNIPNIDVLPIQG 179
Query: 279 LNVYSILQHDTLVMSRDAVNKIVDRM 304
+NVY IL+ LV+++ AV+ + R
Sbjct: 180 INVYDILRRRKLVLTKAAVDALEARF 205
>sp|A1B028|RL4_PARDP 50S ribosomal protein L4 OS=Paracoccus denitrificans (strain Pd
1222) GN=rplD PE=3 SV=1
Length = 206
Score = 167 bits (423), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 94/193 (48%), Positives = 124/193 (64%), Gaps = 1/193 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ D+F + R D++HRVVRWQ AK Q GTHS S+VS + KK +RQKGTG AR
Sbjct: 14 GDIDLSDDIFGLEPRADLLHRVVRWQRAKAQAGTHSVLGKSDVSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG+ + P FR G GP PRSHA L KKVR LGLK ALSA+AA G+L+V + L +
Sbjct: 74 HGSRKAPIFRHGGVYKGPTPRSHAFDLPKKVRALGLKHALSAKAAAGELVVVDSLNIAEA 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLV 291
KT + + K+VL+ DG ++E A +NL V+VLPS+G NVY IL+ DTLV
Sbjct: 134 KTAAVAKAVKE-NGWKRVLVIDGAEVNENFARAARNLEGVDVLPSMGANVYDILRRDTLV 192
Query: 292 MSRDAVNKIVDRM 304
++R V + R+
Sbjct: 193 LTRAGVEALEARL 205
>sp|Q07KL9|RL4_RHOP5 50S ribosomal protein L4 OS=Rhodopseudomonas palustris (strain
BisA53) GN=rplD PE=3 SV=1
Length = 206
Score = 167 bits (423), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 91/204 (44%), Positives = 128/204 (62%), Gaps = 1/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ VT +D G + L+ ++F + R DII R V WQLAKRQ GTH K +E+ TGKK
Sbjct: 3 LKVTTLEGKDAGSVQLSDEIFGLDPRSDIIQRCVIWQLAKRQAGTHKAKGRAEIWRTGKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTG ARHG+ R PQFRGG GP RSHAI L KKVR + LK ALSA+A +G L
Sbjct: 63 MYKQKGTGGARHGSQRVPQFRGGGRAFGPVVRSHAIDLPKKVRAMALKHALSAKAKDGGL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V + + S KTK +V ++ + T L+ DG ++ +A +N+ ++VLP G+N
Sbjct: 123 IVIDQATLDSAKTKALVGHFAGLGLT-SALIIDGAELNNGFAVAARNIPNIDVLPIQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL+ LV+++ AV+ + R
Sbjct: 182 VYDILRRQKLVLTKAAVDALEARF 205
>sp|Q0BUP9|RL4_GRABC 50S ribosomal protein L4 OS=Granulibacter bethesdensis (strain ATCC
BAA-1260 / CGDNIH1) GN=rplD PE=3 SV=1
Length = 215
Score = 167 bits (422), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 91/206 (44%), Positives = 119/206 (57%), Gaps = 2/206 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ I + N G L ++F R DI+ RVV WQLA R+ GTH K + EVSGT
Sbjct: 1 MQIEIKTLDNGSAGTAELPDEIFAATPRADIMARVVHWQLACRRAGTHKVKGMGEVSGTT 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KKP+RQKGTG AR G+LR PQFR G +HGP R H L KKVRRLGL ALS + AEG
Sbjct: 61 KKPYRQKGTGNARQGSLRAPQFRTGGAVHGPVVRDHGYDLPKKVRRLGLISALSQKQAEG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278
KL+V D KT+ + + + L+ DG + E A+++L V+VLP++G
Sbjct: 121 KLVVI-DTAAGMEKTRDLAAKLRAL-GWRSALIVDGASVDEGFARASRSLLAVDVLPTIG 178
Query: 279 LNVYSILQHDTLVMSRDAVNKIVDRM 304
NVY IL HD L ++ V + R+
Sbjct: 179 ANVYDILNHDVLAITVAGVEALKARL 204
>sp|Q5NQ63|RL4_ZYMMO 50S ribosomal protein L4 OS=Zymomonas mobilis subsp. mobilis
(strain ATCC 31821 / ZM4 / CP4) GN=rplD PE=3 SV=1
Length = 207
Score = 167 bits (422), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/205 (45%), Positives = 127/205 (61%), Gaps = 1/205 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + KG + L VF + R DI+HRVV WQL KR+ T +T+ S+V+ +GKK
Sbjct: 3 VEVQSLDASKKGSIELNDAVFGIEPRADILHRVVTWQLEKRRAPTRATRERSDVARSGKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
RQKG G ARHG R P F GG HG + R LNKKVR LGL++ALS++A G L
Sbjct: 63 FGRQKGGGTARHGDRRSPIFIGGGKAHGARARVFNPSLNKKVRALGLRMALSSKAKTGTL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V E L+V + KTK + + KVL+ DG ++E A+ NL ++VLP+VG N
Sbjct: 123 VVIEALDVEA-KTKLLAAQIQSLGFGPKVLVVDGDTVNENFARASSNLVGLDVLPAVGAN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRMH 305
VY IL+HDTLV++R AV K+ R++
Sbjct: 182 VYDILKHDTLVLTRAAVEKLEARLN 206
>sp|B5ZYT6|RL4_RHILW 50S ribosomal protein L4 OS=Rhizobium leguminosarum bv. trifolii
(strain WSM2304) GN=rplD PE=3 SV=1
Length = 206
Score = 166 bits (421), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 89/202 (44%), Positives = 124/202 (61%), Gaps = 1/202 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V +D G + L+ +F + R+DI+ RV+RWQLAK+QQGTH K +EVS TG K +
Sbjct: 5 VKTLEGKDAGKVSLSDAIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTGAKMY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
+QKGTGRARH + R PQFRGG HGP RSH L KKVR LGL++ALSA+ ++V
Sbjct: 65 KQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLRLALSAKIKADDVIV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVY 282
++L KTK + + + + T L G + KLA QN+ ++VLP G+NVY
Sbjct: 125 IDNLVAAEAKTKALASVFETLGLT-NALFIGGAELDGNFKLAAQNIPNIDVLPIQGINVY 183
Query: 283 SILQHDTLVMSRDAVNKIVDRM 304
I++ LV+S+ AV + +R
Sbjct: 184 DIVRRGKLVLSKAAVEALEERF 205
>sp|Q211E9|RL4_RHOPB 50S ribosomal protein L4 OS=Rhodopseudomonas palustris (strain
BisB18) GN=rplD PE=3 SV=1
Length = 206
Score = 166 bits (421), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/204 (44%), Positives = 128/204 (62%), Gaps = 1/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ VT ++ G + L+ ++F + R DII R V WQLAKRQ GTH K +EV TGKK
Sbjct: 3 LKVTTLEGKEAGSVQLSDEIFGLDPRVDIIQRCVNWQLAKRQAGTHKAKGRAEVWRTGKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTG ARHG+ R PQFRGG GP RSHA L KKVR L LK ALSA+A +G L
Sbjct: 63 MYKQKGTGGARHGSQRVPQFRGGGRAFGPVVRSHAFDLPKKVRALALKHALSAKAKDGGL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V E + + KTK +V +++ + T L+ DG ++ +A +N+ ++VLP G+N
Sbjct: 123 IVIESATLEAAKTKALVGHFSGLGLT-SALIIDGAELNNGFAVAARNIPNIDVLPIQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL+ LV+++ AV+ + R
Sbjct: 182 VYDILRRQKLVLTKAAVDALEARF 205
>sp|C6C186|RL4_DESAD 50S ribosomal protein L4 OS=Desulfovibrio salexigens (strain ATCC
14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=rplD PE=3
SV=1
Length = 206
Score = 166 bits (420), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 86/204 (42%), Positives = 132/204 (64%), Gaps = 2/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I + + ++ G M LA +VF+VP++ +I+H VVR QLA ++QGTH+TKT G G K
Sbjct: 4 ITIYDQTKKEVGSMDLAPEVFEVPVKPEILHLVVRSQLAAKRQGTHATKTRGMKRGGGAK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G+ R P +RGG T GP+PR ++ K+NKKVRRL LK+AL++R +E K+
Sbjct: 64 PWRQKGTGRARAGSTRSPLWRGGGTTFGPQPRDYSFKVNKKVRRLALKMALTSRLSEEKM 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
+V +++++P KTK V + K +++ KL L+ +N+ + ++ + LN
Sbjct: 124 MVVKNIDLPEIKTKLFVEVAEALGLEKALVVVKDA--DNKLLLSARNIPGIKLITADQLN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL+ LVM +A + +R+
Sbjct: 182 VYDILKARQLVMLENAAQDLQERL 205
>sp|Q8G077|RL4_BRUSU 50S ribosomal protein L4 OS=Brucella suis biovar 1 (strain 1330)
GN=rplD PE=3 SV=1
Length = 206
Score = 166 bits (420), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 88/204 (43%), Positives = 125/204 (61%), Gaps = 1/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ +T +D G + L ++F + R DI+ RVVRWQLA+RQQG+H + +VS TG K
Sbjct: 3 LTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTGSK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP R+H L KKVR LGL+ ALSA+A L
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVRALGLRHALSAKAKASDL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
++ +DL KTK +V+ + ++ + LL G I + A N+ ++VLP G+N
Sbjct: 123 IIIDDLASADAKTKQLVSQFAKL-GLENALLIGGAEIDANFQRAASNIPNIDVLPVQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL+ LV+S+ AV + +R
Sbjct: 182 VYDILRRGKLVLSKAAVEALEERF 205
>sp|B0CH31|RL4_BRUSI 50S ribosomal protein L4 OS=Brucella suis (strain ATCC 23445 / NCTC
10510) GN=rplD PE=3 SV=1
Length = 206
Score = 166 bits (420), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 88/204 (43%), Positives = 125/204 (61%), Gaps = 1/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ +T +D G + L ++F + R DI+ RVVRWQLA+RQQG+H + +VS TG K
Sbjct: 3 LTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTGSK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP R+H L KKVR LGL+ ALSA+A L
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVRALGLRHALSAKAKASDL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
++ +DL KTK +V+ + ++ + LL G I + A N+ ++VLP G+N
Sbjct: 123 IIIDDLASADAKTKQLVSQFAKL-GLENALLIGGAEIDANFQRAASNIPNIDVLPVQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL+ LV+S+ AV + +R
Sbjct: 182 VYDILRRGKLVLSKAAVEALEERF 205
>sp|A5VR05|RL4_BRUO2 50S ribosomal protein L4 OS=Brucella ovis (strain ATCC 25840 /
63/290 / NCTC 10512) GN=rplD PE=3 SV=1
Length = 206
Score = 166 bits (420), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 88/204 (43%), Positives = 125/204 (61%), Gaps = 1/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ +T +D G + L ++F + R DI+ RVVRWQLA+RQQG+H + +VS TG K
Sbjct: 3 LTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTGSK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP R+H L KKVR LGL+ ALSA+A L
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVRALGLRHALSAKAKASDL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
++ +DL KTK +V+ + ++ + LL G I + A N+ ++VLP G+N
Sbjct: 123 IIIDDLASADAKTKQLVSQFAKL-GLENALLIGGAEIDANFQRAASNIPNIDVLPVQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL+ LV+S+ AV + +R
Sbjct: 182 VYDILRRGKLVLSKAAVEALEERF 205
>sp|Q8YHN9|RL4_BRUME 50S ribosomal protein L4 OS=Brucella melitensis biotype 1 (strain
16M / ATCC 23456 / NCTC 10094) GN=rplD PE=3 SV=2
Length = 206
Score = 166 bits (420), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 88/204 (43%), Positives = 125/204 (61%), Gaps = 1/204 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ +T +D G + L ++F + R DI+ RVVRWQLA+RQQG+H + +VS TG K
Sbjct: 3 LTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTGSK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP R+H L KKVR LGL+ ALSA+A L
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVRALGLRHALSAKAKASDL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
++ +DL KTK +V+ + ++ + LL G I + A N+ ++VLP G+N
Sbjct: 123 IIIDDLASADAKTKQLVSQFAKL-GLENALLIGGAEIDANFQRAASNIPNIDVLPVQGIN 181
Query: 281 VYSILQHDTLVMSRDAVNKIVDRM 304
VY IL+ LV+S+ AV + +R
Sbjct: 182 VYDILRRGKLVLSKAAVEALEERF 205
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,630,859
Number of Sequences: 539616
Number of extensions: 4981001
Number of successful extensions: 11246
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 9835
Number of HSP's gapped (non-prelim): 820
length of query: 310
length of database: 191,569,459
effective HSP length: 117
effective length of query: 193
effective length of database: 128,434,387
effective search space: 24787836691
effective search space used: 24787836691
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)