Query 021591
Match_columns 310
No_of_seqs 191 out of 1203
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 04:11:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021591.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021591hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 CHL00147 rpl4 ribosomal protei 100.0 4.3E-72 9.2E-77 510.8 21.5 205 97-305 5-214 (215)
2 PRK05319 rplD 50S ribosomal pr 100.0 4.7E-71 1E-75 500.7 21.9 205 99-305 1-205 (205)
3 PRK14547 rplD 50S ribosomal pr 100.0 1.6E-69 3.6E-74 513.2 21.0 207 98-305 1-211 (298)
4 PF00573 Ribosomal_L4: Ribosom 100.0 1E-68 2.2E-73 480.9 16.7 189 114-303 1-192 (192)
5 PRK14907 rplD 50S ribosomal pr 100.0 9.9E-68 2.1E-72 498.7 19.1 190 112-305 102-295 (295)
6 KOG1624 Mitochondrial/chloropl 100.0 6.8E-64 1.5E-68 465.9 19.1 251 56-310 13-268 (290)
7 COG0088 RplD Ribosomal protein 100.0 3.9E-63 8.4E-68 451.5 15.6 208 98-306 1-212 (214)
8 PRK04042 rpl4lp 50S ribosomal 100.0 2.3E-62 4.9E-67 455.6 19.1 198 99-304 1-253 (254)
9 TIGR03672 rpl4p_arch 50S ribos 100.0 2.4E-61 5.3E-66 447.8 18.6 197 99-303 1-251 (251)
10 PLN00185 60S ribosomal protein 100.0 1.6E-53 3.4E-58 415.2 20.4 204 99-306 7-271 (405)
11 PTZ00428 60S ribosomal protein 100.0 1.2E-49 2.6E-54 386.4 19.4 204 98-306 4-265 (381)
12 KOG1475 Ribosomal protein RPL1 100.0 4.2E-30 9.2E-35 241.9 12.0 206 98-306 4-265 (363)
13 PTZ00428 60S ribosomal protein 95.4 0.0096 2.1E-07 59.4 2.5 55 156-218 60-130 (381)
14 PF03266 NTPase_1: NTPase; In 58.8 15 0.00033 32.3 4.3 68 216-283 94-162 (168)
15 COG3638 ABC-type phosphate/pho 57.8 9.9 0.00021 36.4 3.1 75 219-308 167-248 (258)
16 COG1618 Predicted nucleotide k 49.8 1.4E+02 0.0031 27.3 8.9 85 196-280 79-165 (179)
17 KOG0333 U5 snRNP-like RNA heli 49.2 95 0.0021 33.3 8.8 94 173-273 472-572 (673)
18 PHA02324 hypothetical protein 40.0 22 0.00048 25.4 1.8 28 139-166 18-46 (47)
19 PF13514 AAA_27: AAA domain 39.1 58 0.0013 36.8 5.9 63 203-268 1034-1101(1111)
20 PRK05642 DNA replication initi 34.3 48 0.001 30.4 3.7 96 210-305 90-199 (234)
21 PF00308 Bac_DnaA: Bacterial d 31.9 63 0.0014 29.4 4.0 96 211-306 91-200 (219)
22 PRK09087 hypothetical protein; 30.8 1.2E+02 0.0026 27.8 5.7 87 219-305 89-186 (226)
23 COG1136 SalX ABC-type antimicr 30.5 1.4E+02 0.0031 28.0 6.1 57 202-264 148-208 (226)
24 PF00535 Glycos_transf_2: Glyc 30.2 40 0.00088 26.6 2.2 87 205-306 15-105 (169)
25 PRK06893 DNA replication initi 29.3 1E+02 0.0023 28.0 5.0 92 214-305 88-194 (229)
26 PRK13695 putative NTPase; Prov 29.1 2.1E+02 0.0046 24.4 6.6 67 217-283 96-163 (174)
27 PF08433 KTI12: Chromatin asso 26.9 2.6E+02 0.0056 26.6 7.4 95 194-309 47-142 (270)
28 PF02463 SMC_N: RecF/RecN/SMC 25.5 97 0.0021 27.4 4.0 66 201-270 143-210 (220)
29 PRK10681 DNA-binding transcrip 24.7 5.6E+02 0.012 23.8 9.0 62 206-277 81-142 (252)
30 PRK11425 PTS system N-acetylga 24.5 3E+02 0.0066 24.2 6.8 73 233-308 63-138 (157)
31 PRK14086 dnaA chromosomal repl 24.3 1.3E+02 0.0028 32.5 5.2 95 213-307 373-481 (617)
32 PRK06585 holA DNA polymerase I 21.1 3.5E+02 0.0076 25.8 7.1 87 217-306 81-176 (343)
33 COG1122 CbiO ABC-type cobalt t 20.9 1.1E+02 0.0025 28.5 3.6 49 202-253 144-196 (235)
34 PF13558 SbcCD_C: Putative exo 20.6 1.5E+02 0.0032 23.3 3.7 39 204-242 43-90 (90)
No 1
>CHL00147 rpl4 ribosomal protein L4; Validated
Probab=100.00 E-value=4.3e-72 Score=510.76 Aligned_cols=205 Identities=35% Similarity=0.564 Sum_probs=194.8
Q ss_pred cceeeEEEccCCCe-eeeEEcCccccCCCCchhHHHHHHHHHHHHcccCCCCCceeeeecCCCcCccccCCCCccCCCCC
Q 021591 97 QDLVIPVTNFFNED-KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTL 175 (310)
Q Consensus 97 ~~~~v~V~n~~g~~-~g~i~Lp~~VF~~~~r~dllh~vV~~q~anrRqGta~tKtRaEV~GsGrKp~rQKGTGrAR~Gs~ 175 (310)
..++++|+|++|+. +|+++|+++|| .+++.||||++|+||++++|||||+||||+||+|||||||||||||||||||+
T Consensus 5 ~~~~~~v~~~~g~~~~~~~~l~~~vf-~~~~~~ll~~~v~~~~a~~R~gt~~tKtR~eV~G~grKp~~QKGTGrAR~Gs~ 83 (215)
T CHL00147 5 KFLNYPVIDLTGKEKSETIKLKLNVL-EKSGNYLLHRALVRQNNNQRQGTASTKTRSEVRGGGRKPWKQKGTGRARAGSN 83 (215)
T ss_pred ceeeEEEEccCCCeecceEEeCHHHh-CCchHhHHHHHHHHHHHHHhhcccccCccccccCCCCCCcccCCCCccCCCCC
Confidence 34689999999999 89999999999 55779999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCcccccCCCcccccccccHHHHHHHHHHHHHHHHHcCCeEEeccCC--CCCCChHHHHHHHHhccCC--CcEEE
Q 021591 176 RGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLE--VPSHKTKFIVNYYNQMENT--KKVLL 251 (310)
Q Consensus 176 rsP~~rGGG~afGPkPR~y~~klNKK~rrlAlrsALSaK~~~g~LiVVd~l~--~~~~KTK~~~~~Lk~l~~~--k~~Li 251 (310)
|||+|||||++|||+||+|+++||||+|++||++|||+| +++|+|||++. ++.+|||+++++|++++.. +++||
T Consensus 84 rsP~~rgGG~afgP~pR~y~~klnKKvrrlAl~sALS~k--~~~l~VVd~~~~~~~~~KTK~~~~~L~~l~~~~~~~~L~ 161 (215)
T CHL00147 84 RSPLWKGGGVIFGPKPKTYSNKLNKKERRLALRTLLYNK--SNNITVVENFESSITNPKTKAFINLLKKLNINLDQKILI 161 (215)
T ss_pred cCCcccCCEeecCCCCcchhhhcCHHHHHHHHHHHHHHh--hCCeEEEcccccccCCCCHHHHHHHHHHcCCCcCCceEE
Confidence 999999999999999999999999999999999999998 45899999999 9999999999999999863 57999
Q ss_pred EeCCCcchHHHHHHhcCCceeEEecCCCChhhhccCCcEEEeHHHHHHHHHHhc
Q 021591 252 CDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNKIVDRMH 305 (310)
Q Consensus 252 V~~~~~d~nl~~a~RNip~V~v~~~~~LNvydLL~~~~lViT~~Al~~Leerl~ 305 (310)
|+ ++.|+|+.+|+||||+|+++++++|||||||++++||||++|+++||++|.
T Consensus 162 V~-~~~~~nl~~S~rNlp~V~v~~~~~lNv~dLL~~~~vvit~~Al~~lee~~~ 214 (215)
T CHL00147 162 IV-PEKTENLYLSTRNLKNVELISADTLNIKSLLKAKQIIITKEALKIIEEVYN 214 (215)
T ss_pred EE-CCCchHHHHHHhCCCCcEEEecCCccHHHHhcCCcEEEEHHHHHHHHHHhc
Confidence 98 467899999999999999999999999999999999999999999999985
No 2
>PRK05319 rplD 50S ribosomal protein L4; Provisional
Probab=100.00 E-value=4.7e-71 Score=500.66 Aligned_cols=205 Identities=48% Similarity=0.758 Sum_probs=199.7
Q ss_pred eeeEEEccCCCeeeeEEcCccccCCCCchhHHHHHHHHHHHHcccCCCCCceeeeecCCCcCccccCCCCccCCCCCCCC
Q 021591 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGP 178 (310)
Q Consensus 99 ~~v~V~n~~g~~~g~i~Lp~~VF~~~~r~dllh~vV~~q~anrRqGta~tKtRaEV~GsGrKp~rQKGTGrAR~Gs~rsP 178 (310)
|+++|||++|+..|+++||++||+.|+|.||||++|+||++++|||||+||+|+||+|||||||+||||||||+||++||
T Consensus 1 ~~~~v~~~~g~~~~~i~l~~~vF~~~~r~dll~~~v~~~~~~~Rqgta~tk~r~ev~GsgrK~~~QKGTGrAR~Gs~rsP 80 (205)
T PRK05319 1 MELKVLNLDGKEAGEVELSDAVFGVEPNEALLHQVVVAQLANARQGTHATKTRSEVSGGGKKPWRQKGTGRARQGSIRSP 80 (205)
T ss_pred CeeEEEcCCCCCcceEEcCHHHhCCCccHHHHHHHHHHHHHhcccCcccCCcccccCCCCCCCCCCCCCCccCcCcccCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcccccCCCcccccccccHHHHHHHHHHHHHHHHHcCCeEEeccCCCCCCChHHHHHHHHhccCCCcEEEEeCCCcc
Q 021591 179 QFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIH 258 (310)
Q Consensus 179 ~~rGGG~afGPkPR~y~~klNKK~rrlAlrsALSaK~~~g~LiVVd~l~~~~~KTK~~~~~Lk~l~~~k~~LiV~~~~~d 258 (310)
+|||||++|||+||+|+++||||+|++|+++|||+++.+++|+|||++.++.+|||+++++|++++. +++|||+ ++.+
T Consensus 81 ~~rGGg~afgpkpr~~~~klnkK~~~lAl~~aLs~k~~~~~l~Vvd~~~~~~~KTk~~~~~l~~lg~-~~~Lii~-~~~~ 158 (205)
T PRK05319 81 QWRGGGVVFGPKPRDYSQKLNKKVRRLALRSALSEKAREGRLVVVDDLSLEAPKTKELAAKLKNLGL-KKVLIVT-DEVD 158 (205)
T ss_pred cccCCeeeCCCCccchhhhcCHHHHHHHHHHHHHHHHhcCCeEEEeccccCCCCHHHHHHHHHHcCC-CceEEEE-CCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999987 6799998 4678
Q ss_pred hHHHHHHhcCCceeEEecCCCChhhhccCCcEEEeHHHHHHHHHHhc
Q 021591 259 EKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNKIVDRMH 305 (310)
Q Consensus 259 ~nl~~a~RNip~V~v~~~~~LNvydLL~~~~lViT~~Al~~Leerl~ 305 (310)
+|+.+|+||||+|+++++++||+||||+++.||||++|++.|++++.
T Consensus 159 ~n~~~a~rNi~~v~v~~~~~ln~~dll~~~~vv~t~~Al~~l~~~~~ 205 (205)
T PRK05319 159 ENLYLSARNLPNVDVLPAQGLNVYDLLRADKVVLTKAAVKKLEERLA 205 (205)
T ss_pred hHHHHHHhCCCCcEEEecCCccHHHhcCCCcEEEEHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999873
No 3
>PRK14547 rplD 50S ribosomal protein L4; Provisional
Probab=100.00 E-value=1.6e-69 Score=513.24 Aligned_cols=207 Identities=40% Similarity=0.585 Sum_probs=196.4
Q ss_pred ceeeEEEccCCCeeeeEEcCccccCCCCchhHHHHHHHHHHHHcccCCCCCceeeeecCCCcCccccCCCCccCCCCCCC
Q 021591 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRG 177 (310)
Q Consensus 98 ~~~v~V~n~~g~~~g~i~Lp~~VF~~~~r~dllh~vV~~q~anrRqGta~tKtRaEV~GsGrKp~rQKGTGrAR~Gs~rs 177 (310)
||+++|||++|+.+|+|+||++||+.++|.||||++|+||++++|||||+||||+||+|||||||+|||||||||||+||
T Consensus 1 M~~~~v~~~~g~~~g~ieL~~~vF~~~~r~dllh~vv~~q~a~~Rqgt~~tKtRaEV~G~GkKP~rQKGTGrAR~Gs~rs 80 (298)
T PRK14547 1 MATCDVLDWQGKKVGSAELPLKVFDVETNIPLIHQVVVAQMAAARQGTHHTKTRAEVRGGGKKPWRQKGTGRARQGSIRA 80 (298)
T ss_pred CceeEEeccCCCCcceEECCHHHhCCCccHHHHHHHHHHHHHhhhcCCCCCCceeeccCCCCCccCCCCCcccCcCCccC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCcccccCCCcccccccccHHHHHHHHHHHHHHHHHcCCeEEeccCC-CCCCChHHHHHHHHhccCCCcEEEEeCCC
Q 021591 178 PQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLE-VPSHKTKFIVNYYNQMENTKKVLLCDGGC 256 (310)
Q Consensus 178 P~~rGGG~afGPkPR~y~~klNKK~rrlAlrsALSaK~~~g~LiVVd~l~-~~~~KTK~~~~~Lk~l~~~k~~LiV~~~~ 256 (310)
|+|||||++|||+||+|+++||||+|++||++|||+|+++++|+|||++. ++.+|||+++++|+.++..+++|||+ ++
T Consensus 81 P~wrGGGvafGPkpR~y~~klNKK~rrlAlrsALS~k~~~~~liVVd~~~~~~~~KTK~~~~~L~~l~~~~~lLiv~-~~ 159 (298)
T PRK14547 81 PQWRGGGTVHGPRPREYNQRTPKKMRQAALRGALSDRARDNRLIVVESLQDGDPPSTKAVAQALSVMEDQRALLVVA-ER 159 (298)
T ss_pred CceeCCeeecCCCCchhhhhcCHHHHHHHHHHHHHHHHhcCCEEEEeCccccCCcCHHHHHHHHHhcccCceEEEEe-cC
Confidence 99999999999999999999999999999999999999999999999996 79999999999999998545677776 45
Q ss_pred cchHHHHHHhcCCceeEEecCCCChhhhccCCcEEEeHHHHHHH---HHHhc
Q 021591 257 IHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNKI---VDRMH 305 (310)
Q Consensus 257 ~d~nl~~a~RNip~V~v~~~~~LNvydLL~~~~lViT~~Al~~L---eerl~ 305 (310)
.+.++.+|+||||+|+++++++|||||||++++||||++||+.| +++++
T Consensus 160 ~~~~~~ls~RNL~~V~v~~~~~lNv~dLl~~~~vViT~~Al~~L~~~~~~~~ 211 (298)
T PRK14547 160 SDAVERLSVRNLARVHVLGADQLNTYDVLNVDWVVFTQSALEAFVGAKSRWG 211 (298)
T ss_pred ccHHHHHHHhCCCCcEEEecCCccHHHHhCCCCEEEEHHHHHHHHhhccccc
Confidence 57788899999999999999999999999999999999999999 55554
No 4
>PF00573 Ribosomal_L4: Ribosomal protein L4/L1 family; InterPro: IPR002136 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes ribosomal L4/L1 from eukaryotes and plants and L4 from bacteria. L4 from yeast has been shown to bind rRNA []. These proteins have 246 (plant) to 427 (human) amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3IZR_D 1VSA_D 3D5D_F 3MS1_E 3F1F_F 3PYO_E 3MRZ_E 3F1H_F 3PYR_E 1VSP_D ....
Probab=100.00 E-value=1e-68 Score=480.89 Aligned_cols=189 Identities=53% Similarity=0.850 Sum_probs=179.3
Q ss_pred EEcCccccCCCCchhHHHHHHHHHHHHcccCCCCCceeeeecCCCcCccccCCCCccCCCCCCCCcccCcccccCCCc-c
Q 021591 114 MVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKP-R 192 (310)
Q Consensus 114 i~Lp~~VF~~~~r~dllh~vV~~q~anrRqGta~tKtRaEV~GsGrKp~rQKGTGrAR~Gs~rsP~~rGGG~afGPkP-R 192 (310)
|+||++||+.|+|.||||+||+||++++||||++||||+||+|||||||+||||||||+||++||+|||||++|||+| |
T Consensus 1 i~L~~~vF~~~~r~~llh~~v~~~~~~~Rqgt~~tktr~ev~g~grKp~~QKGTGrAR~Gs~rsP~~rgGg~afgPkp~r 80 (192)
T PF00573_consen 1 IELSPDVFNVPVRPDLLHRAVVWQLANRRQGTASTKTRSEVSGSGRKPWPQKGTGRARQGSIRSPQWRGGGVAFGPKPPR 80 (192)
T ss_dssp -ES-CGGGGSSTSHHHHHHHHHHHHHHTSSBT-SSSTSTTSSSSSSSSSSSSSSSSSSSSSCTSTTSTTSSBSSSSSSTS
T ss_pred CCCCHHHhCCCCcHHHHHHHHHHHHHhccCCccCCccceEEecccCcccCCCCCcccccCccccceeeccEEecCCcccc
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred cccccccHHHHHHHHHHHHHHHHHcCCeEEeccCC-CCCCChHHHHHHHHhccC-CCcEEEEeCCCcchHHHHHHhcCCc
Q 021591 193 SHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLE-VPSHKTKFIVNYYNQMEN-TKKVLLCDGGCIHEKLKLATQNLHY 270 (310)
Q Consensus 193 ~y~~klNKK~rrlAlrsALSaK~~~g~LiVVd~l~-~~~~KTK~~~~~Lk~l~~-~k~~LiV~~~~~d~nl~~a~RNip~ 270 (310)
+|+++||||+|++|+++|||+|+.+|+|+|||+++ ++.+|||+++++|++++. ++++|||++ +.|+++.+|+||||+
T Consensus 81 ~~~~klnkK~r~lAl~~aLs~k~~~~~l~vvd~~~~~~~~kTk~~~~~L~~~~~~~~~~L~V~~-~~~~~~~~a~rNl~~ 159 (192)
T PF00573_consen 81 DYSYKLNKKVRRLALRSALSAKAAEGNLIVVDNFSPLEEPKTKDLVKLLKKLGLKGKSVLFVVG-EENENLFRASRNLPG 159 (192)
T ss_dssp BCSHHHHHHHHHHHHHHHHHHHHHTTHHHHCTSCSSSSSSSHHHHHHHHHHTTTSSSSEEEEES-STSHCHHHHHCTSTT
T ss_pred cceecCChHHHHHHHHHHHHHhhcccceEEeeccccccccCHHHHHHHHHHhhhcccceEEEec-CCchHHHHHHHccCC
Confidence 99999999999999999999999999999999998 999999999999999987 678999994 678999999999999
Q ss_pred eeEEecCCCChhhhccCCcEEEeHHHHHHHHHH
Q 021591 271 VNVLPSVGLNVYSILQHDTLVMSRDAVNKIVDR 303 (310)
Q Consensus 271 V~v~~~~~LNvydLL~~~~lViT~~Al~~Leer 303 (310)
|+++++++|||||||++++||||++||++||||
T Consensus 160 v~~~~~~~lnv~dll~~~~lv~t~~Al~~L~eR 192 (192)
T PF00573_consen 160 VDVLPVEGLNVYDLLKADKLVITKSALEKLEER 192 (192)
T ss_dssp EEEEESTG--HHHHCHSSEEEEEHHHHHHHHH-
T ss_pred eEEEecCcEeHHHHhCCCcEEEEHHHHHHHhcC
Confidence 999999999999999999999999999999997
No 5
>PRK14907 rplD 50S ribosomal protein L4; Provisional
Probab=100.00 E-value=9.9e-68 Score=498.68 Aligned_cols=190 Identities=36% Similarity=0.560 Sum_probs=181.8
Q ss_pred eeEEcCccccCCC-CchhHHHHHHHHHHHHcccCCCCCceeeeecCCCcCccccCCCCccCCCCCCCCcccCcccccCCC
Q 021591 112 GFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPK 190 (310)
Q Consensus 112 g~i~Lp~~VF~~~-~r~dllh~vV~~q~anrRqGta~tKtRaEV~GsGrKp~rQKGTGrAR~Gs~rsP~~rGGG~afGPk 190 (310)
..++|+++||+.+ ++.++||++|+||++++|||||+||||+||+|||||||||||||||||||+|||+|||||++|||+
T Consensus 102 ~~ieL~~~vF~~e~~~~~llh~~V~~q~A~~RqGT~~TKtRsEVsGggkKPwrQKGTGRAR~GS~RSP~wrGGGvaFGPk 181 (295)
T PRK14907 102 NTSKLPKKLFASEKIYSQAIFDTILSERASRRQGTHKVKTRAEVSGTGKKPWRQKGTGRARAGSTRSPIFVGGGRAFGPT 181 (295)
T ss_pred ceEEeCHHHhCCCccchhHHHHHHHHHHHHhccccccccchhhccCCCCCCcccCCCCccCCCCCcCCcccCCeeecCCC
Confidence 4589999999999 799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-ccccccccHHHHHHHHHHHHHHHHHcCCeEEeccCCCCCCChHHHHHHHHhccCC--CcEEEEeCCCcchHHHHHHhc
Q 021591 191 P-RSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQMENT--KKVLLCDGGCIHEKLKLATQN 267 (310)
Q Consensus 191 P-R~y~~klNKK~rrlAlrsALSaK~~~g~LiVVd~l~~~~~KTK~~~~~Lk~l~~~--k~~LiV~~~~~d~nl~~a~RN 267 (310)
| |+|+++||+|+|++||++|||+++++ +|+|||+|.++.+|||+++++|++++.. +++|||+ . |+|+.+|+||
T Consensus 182 P~RdY~~KLNKKvRrLALrsALS~ka~~-~LvVVd~~~le~~KTK~l~~~L~~lgl~~~k~vLiV~-~--denl~lSaRN 257 (295)
T PRK14907 182 PERNYKLKVNKKVRFNAFVSALTLLANS-KAVLVDDFKLEKISTKDLIKKLTKLKINNLKHILIVS-N--DENIFKSARN 257 (295)
T ss_pred CccchhhhcCHHHHHHHHHHHHHHhccC-CEEEEecccCCCCCHHHHHHHHHHcCcccCCceEEEE-C--CchHHHHHhC
Confidence 8 99999999999999999999999876 7999999999999999999999999863 4799998 2 6799999999
Q ss_pred CCceeEEecCCCChhhhccCCcEEEeHHHHHHHHHHhc
Q 021591 268 LHYVNVLPSVGLNVYSILQHDTLVMSRDAVNKIVDRMH 305 (310)
Q Consensus 268 ip~V~v~~~~~LNvydLL~~~~lViT~~Al~~Leerl~ 305 (310)
||+|+++++++|||||||+++.||||++||+.||++|.
T Consensus 258 Lp~V~Vl~~~~LNVydLL~~~~vViT~~Al~~Leer~~ 295 (295)
T PRK14907 258 LQNVIVVKPTSLSVELLIAADVLVLSKESIENLEGRIK 295 (295)
T ss_pred CCCceEeecCCccHHHHhcCCcEEEeHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999973
No 6
>KOG1624 consensus Mitochondrial/chloroplast ribosomal protein L4 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.8e-64 Score=465.90 Aligned_cols=251 Identities=45% Similarity=0.743 Sum_probs=231.9
Q ss_pred hhhcccccccccCCCCCCCCCCCcccccccccCCccccCCC--cceeeEEEccCCCeeeeEEcCccccCCCCchhHHHHH
Q 021591 56 FLASRKFSTTILTPDSSEGAFPSDLLLKKTVLTPDITIGLH--QDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRV 133 (310)
Q Consensus 56 ~~~~r~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~--~~~~v~V~n~~g~~~g~i~Lp~~VF~~~~r~dllh~v 133 (310)
++..|.++++..+|. ..+++. +-...+.+|+.....+ |...+++..+++|++|.++||+++|.+++|.||||++
T Consensus 13 ~ss~~~l~ss~~~~~---~~~~s~-l~~~~~~~p~~p~~~~p~qa~v~~~~~~e~E~~gl~~l~~dvf~~~~RrDIlhra 88 (290)
T KOG1624|consen 13 FSSKRNLVSSTQSPP---EQITSA-LHKESTLKPELPVSIPPKQAWVEPLDFFELEKVGLVDLHPDVFAEPPRRDILHRA 88 (290)
T ss_pred HHHHHHHHhhccCCc---cccccc-cccccccCcCCCCCcChhhheeeeccccccccceeeecChhhhccchHHHHHHHH
Confidence 556678888877653 356666 5566677777776665 7788888889999999999999999999999999999
Q ss_pred HHHHHHHcccCCCCCceeeeecCCCcCccccCCCCccCCCCCCCCcccCcccccCCC-cccccccccHHHHHHHHHHHHH
Q 021591 134 VRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALS 212 (310)
Q Consensus 134 V~~q~anrRqGta~tKtRaEV~GsGrKp~rQKGTGrAR~Gs~rsP~~rGGG~afGPk-PR~y~~klNKK~rrlAlrsALS 212 (310)
|+||.+|+||||++||||+||+|||||||+||||||||+|+.|||+++|||++|||+ ||||++|||+|+|.|||++|||
T Consensus 89 v~wq~~nrrvgtastktRaEv~ggGrKp~~QKgtGrAr~Gs~rsP~r~gGg~~~gpr~P~d~~~~Lp~kvr~lgl~~ALS 168 (290)
T KOG1624|consen 89 VVWQLDNRRVGTASTKTRAEVRGGGRKPWPQKGTGRARVGSLRSPQRRGGGVAHGPRGPRDYSYKLPSKVRSLGLKIALS 168 (290)
T ss_pred HHHhhcccccccccCCccccccCCCCCcCcccCCCcccccCccCcccCCCccccCCCCCcchhhhccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHcCCeEEeccCCCCCCChHHHHHHHHhccCCCcEEEEeCC--CcchHHHHHHhcCCceeEEecCCCChhhhccCCcE
Q 021591 213 ARAAEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGG--CIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTL 290 (310)
Q Consensus 213 aK~~~g~LiVVd~l~~~~~KTK~~~~~Lk~l~~~k~~LiV~~~--~~d~nl~~a~RNip~V~v~~~~~LNvydLL~~~~l 290 (310)
+++++++|+|+|++.++.+|||...+++...+++.++|||+.. +.++|+.+|.+||.+++++|+-+|||||+|+||++
T Consensus 169 ~~~a~~~l~I~d~~~L~t~~pk~~~~l~~~~~~g~~vl~v~~~~~~~~e~l~~as~~L~~~n~ip~~glnv~s~lk~dtl 248 (290)
T KOG1624|consen 169 AKLAQDDLHIVDELGLPTGKPKYLLNLLAQRNWGTSVLFVDEDHFEFDENLALASRRLGYLNLIPVGGLNVFSILKHDTL 248 (290)
T ss_pred HHHhCCceEEecccCCCCCCcHHHHHHHHHHhcCCeeEEeccchhhchHHHHHHhhccCeeEeecccccchhhhhhcCce
Confidence 9999999999999999999999999999999888889999863 37899999999999999999999999999999999
Q ss_pred EEeHHHHHHHHHHhcCCCCC
Q 021591 291 VMSRDAVNKIVDRMHTPINR 310 (310)
Q Consensus 291 ViT~~Al~~Leerl~~~i~r 310 (310)
|||.+|++.||++++..++|
T Consensus 249 vlt~~aVe~l~er~~~~~~r 268 (290)
T KOG1624|consen 249 VLTREAVEFLEERLLQQVNR 268 (290)
T ss_pred EecHHHHHHHHHHHHHHHhh
Confidence 99999999999999988775
No 7
>COG0088 RplD Ribosomal protein L4 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.9e-63 Score=451.49 Aligned_cols=208 Identities=46% Similarity=0.664 Sum_probs=198.0
Q ss_pred ceeeEEEccCCCeeeeEEcCccccCCCCchhHHHHHHHHHHHHcccCCCCCceeeeecCCCcCccccCCCCccCCCCCCC
Q 021591 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRG 177 (310)
Q Consensus 98 ~~~v~V~n~~g~~~g~i~Lp~~VF~~~~r~dllh~vV~~q~anrRqGta~tKtRaEV~GsGrKp~rQKGTGrAR~Gs~rs 177 (310)
||+++|||++|+.+|++++++.||..+.+.||||+||+||++++|||||++|+|+||+|+|+|||+|||||+||||++++
T Consensus 1 m~k~~v~~~~G~~~g~~~~~~~vf~~~~~~dli~~av~a~~a~~RQgt~~~k~rgevs~~g~Kp~~QkgtgraR~gs~rs 80 (214)
T COG0088 1 MMKLKVYDLDGEEVGEVELLPEVFGPERNEDLIHRAVLAQLANRRQGTHSTKTRGEVSGGGKKPWGQKGTGRARQGSIRS 80 (214)
T ss_pred CCcceEeCCCCCCccccccChhhccCCchHHHHHHHHHHHHHhhhccCCCCCCcccccccCcCCCCCCcCCcCCCCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCcccccCCCc-ccccccccHHHHHHHHHHHHHHHHHcCCeEEeccCCCC-CCChHHHHHHHHhccCCC-cEEEEeC
Q 021591 178 PQFRGGTTMHGPKP-RSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVP-SHKTKFIVNYYNQMENTK-KVLLCDG 254 (310)
Q Consensus 178 P~~rGGG~afGPkP-R~y~~klNKK~rrlAlrsALSaK~~~g~LiVVd~l~~~-~~KTK~~~~~Lk~l~~~k-~~LiV~~ 254 (310)
|+|||||++|||+| |||+++||||||++||++|||+++++++|+++|++.++ .+|||+++++|+++..+. .+|++.
T Consensus 81 P~~rGGg~a~gPkp~r~~~~klnkK~rrlAl~sAls~ka~~~~lv~~~~~~~~~~~kTK~~~~~lk~l~~~~~~~l~~~- 159 (214)
T COG0088 81 PQWRGGGVAHGPKPERDYSQKLNKKERRLALRSALSAKARAGKLVVVRGHVFEDAPKTKELVEFLKKLGLDVKRLLIVK- 159 (214)
T ss_pred CeeecCccccCCCCccchhhhcCHHHHHHHHHHHHHHhccCCCEEEEecccccCCccHHHHHHHHHHhhhhhceeEEee-
Confidence 99999999999999 99999999999999999999999999999999999999 999999999999987654 455555
Q ss_pred CCcchHHHHHHhcCCceeEEecCC-CChhhhccCCcEEEeHHHHHHHHHHhcC
Q 021591 255 GCIHEKLKLATQNLHYVNVLPSVG-LNVYSILQHDTLVMSRDAVNKIVDRMHT 306 (310)
Q Consensus 255 ~~~d~nl~~a~RNip~V~v~~~~~-LNvydLL~~~~lViT~~Al~~Leerl~~ 306 (310)
.+.++|+.+++|||+++.++.+.+ +|+|||+.++.|+++++|++.++++|..
T Consensus 160 ~~~~~n~~ls~Rnl~~~~~~~~~~~~~~~Dv~~~~~l~i~~~A~~~~~~~l~~ 212 (214)
T COG0088 160 GERDGNGKLSARNLKNVKVVLVVGGLPVVDVLRADKLVITKLAPGKIEERLTV 212 (214)
T ss_pred cccccceeecccCCCCceeeeeeccccceEEEeecceeeeHhhhhhhhhhhhc
Confidence 467889999999999999999998 9999999999999999999999999863
No 8
>PRK04042 rpl4lp 50S ribosomal protein L4P; Provisional
Probab=100.00 E-value=2.3e-62 Score=455.55 Aligned_cols=198 Identities=31% Similarity=0.384 Sum_probs=188.4
Q ss_pred eeeEEEccCCCeeeeEEcCccccCCCCchhHHHHHHHHHHHHcccCC-----CCCceeeeecCCCc---CccccCCCCcc
Q 021591 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGT-----HSTKTISEVSGTGK---KPWRQKGTGRA 170 (310)
Q Consensus 99 ~~v~V~n~~g~~~g~i~Lp~~VF~~~~r~dllh~vV~~q~anrRqGt-----a~tKtRaEV~GsGr---Kp~rQKGTGrA 170 (310)
|+++|||++|+..|+++||+ ||+.++|+|+||+||+||++|+|||| |+||||+||||||| |||||||||||
T Consensus 1 ~~v~v~~~~g~~~g~i~L~~-vF~~~~~~~lv~~vv~~~~an~Rqgt~~~~ta~tKtraev~G~Gr~~~Kp~rQKGTGrA 79 (254)
T PRK04042 1 MKAKVYDLDGEVVGEIELPA-VFEEPVRPDLIRRAVLAAQTARLQPKGRDPLAGKRTSAESWGSGRGIARVPRLKGGSRA 79 (254)
T ss_pred CeeEEEcCCCCCcceEehhH-hhCCCCcHHHHHHHHHHHHHhccCCCCCCccccCccceeEcCCCCCcCcCCccCCCCCc
Confidence 68999999999999999995 99999999999999999999999994 89999999999999 99999999999
Q ss_pred CCCCCCCCcccCcccccCCCc-ccccccccHHHHHHHHHHHHHHHHHcC---------------CeEEeccCCCCCCChH
Q 021591 171 RHGTLRGPQFRGGTTMHGPKP-RSHAIKLNKKVRRLGLKIALSARAAEG---------------KLLVFEDLEVPSHKTK 234 (310)
Q Consensus 171 R~Gs~rsP~~rGGG~afGPkP-R~y~~klNKK~rrlAlrsALSaK~~~g---------------~LiVVd~l~~~~~KTK 234 (310)
| |||+|||||++|||+| |+|+++||||+|++|+++|||+++.++ +|+|||+++ +.+|||
T Consensus 80 r----rsP~~rGGgv~fgPkp~R~y~~klnkK~rrlAlrsALs~k~~~~lv~~~~~~~~~~~e~~lvvvd~~~-~~~KTK 154 (254)
T PRK04042 80 A----FVPQAVGGRRAHPPKVEKDLHEKINKKERRLAIRSAIAATANPELVKARGHVFEGVPELPLVVVDDFE-SLKKTK 154 (254)
T ss_pred c----ccCccCcCCeeCCCCCCcccccccCHHHHHHHHHHHHHHhhhhhhhhhcCccccCCCccCEEEEcccc-cccCHH
Confidence 8 9999999999999999 999999999999999999999999984 899999999 999999
Q ss_pred HHHHHHHhccCC---------------------------CcEEEEeCCCcchHHHHHHhcCCceeEEecCCCChhhhccC
Q 021591 235 FIVNYYNQMENT---------------------------KKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQH 287 (310)
Q Consensus 235 ~~~~~Lk~l~~~---------------------------k~~LiV~~~~~d~nl~~a~RNip~V~v~~~~~LNvydLL~~ 287 (310)
+++++|++++.. +++|||+ ++ |+++++|+||||+|+++++++||+||||++
T Consensus 155 ~~~~~Lk~lg~~~~~~~~~~~~~~~~~kgk~r~~~~~~~~~~LiV~-~~-d~~~~~s~RNi~~v~v~~~~~lnv~dLl~~ 232 (254)
T PRK04042 155 EVRELLEKLGLYDDVERAKEGKKIRAGKGKMRGRRYKKPKSVLIVV-SD-DSPIVKAARNLPGVDVVTVDNLNVEHLAPG 232 (254)
T ss_pred HHHHHHHHcCCcccchhhhccceecccccccccccccCCCccEEEE-cC-CcceeehhcCCCCCEEEecCCccHHHhhCc
Confidence 999999998752 3699998 45 889999999999999999999999999998
Q ss_pred ----CcEEEeHHHHHHHHHHh
Q 021591 288 ----DTLVMSRDAVNKIVDRM 304 (310)
Q Consensus 288 ----~~lViT~~Al~~Leerl 304 (310)
+.||||++|++.|+++|
T Consensus 233 ~~~~~~vv~t~~Al~~l~e~~ 253 (254)
T PRK04042 233 GHPGRLTVWTESAIEELRERF 253 (254)
T ss_pred CCCCCeEEEEHHHHHHHHHHh
Confidence 78999999999999987
No 9
>TIGR03672 rpl4p_arch 50S ribosomal protein L4P. One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.
Probab=100.00 E-value=2.4e-61 Score=447.78 Aligned_cols=197 Identities=32% Similarity=0.406 Sum_probs=186.8
Q ss_pred eeeEEEccCCCeeeeEEcCccccCCCCchhHHHHHHHHHHHHcccCC-----CCCceeeeecCCCc---CccccCCCCcc
Q 021591 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGT-----HSTKTISEVSGTGK---KPWRQKGTGRA 170 (310)
Q Consensus 99 ~~v~V~n~~g~~~g~i~Lp~~VF~~~~r~dllh~vV~~q~anrRqGt-----a~tKtRaEV~GsGr---Kp~rQKGTGrA 170 (310)
|+++|||++|+..|+++|| +||+.|+|.|+||+||+||++|+|||| |+||||+||||+|| |||||||||||
T Consensus 1 m~~~v~~~~g~~~~~i~l~-~vF~~~~~~~lv~~vv~~~~an~Rqgt~~~~~a~tKtraev~G~Grg~aKp~rQKGTGrA 79 (251)
T TIGR03672 1 MKAKVYDLDGEVVGEIELP-AVFEEPVRPDLIKRAVLAAQTNRLQPYGADPYAGKRTSAESWGSGRGIARVPRIKGGSRA 79 (251)
T ss_pred CceEEEccCCCCcceEehH-HhhCCCccHHHHHHHHHHHHHhccCCCCCCcccCcccceeEccCCCCcCCCCccCCCCcc
Confidence 6799999999999999999 599999999999999999999999999 56999999999999 99999999999
Q ss_pred CCCCCCCCcccCcccccCCCc-ccccccccHHHHHHHHHHHHHHHHHcC--------------CeEEeccCCCCCCChHH
Q 021591 171 RHGTLRGPQFRGGTTMHGPKP-RSHAIKLNKKVRRLGLKIALSARAAEG--------------KLLVFEDLEVPSHKTKF 235 (310)
Q Consensus 171 R~Gs~rsP~~rGGG~afGPkP-R~y~~klNKK~rrlAlrsALSaK~~~g--------------~LiVVd~l~~~~~KTK~ 235 (310)
+|+|+|||||++|||+| |+|+++||||+|++|+++|||+++.++ +|+|||+++ +.+|||+
T Consensus 80 ----~rsP~~rGGGv~fgPkp~R~y~~klNkK~rrlAl~sALs~k~~~~lv~~~~~~~~~~e~~lvVvd~~~-~~~KTK~ 154 (251)
T TIGR03672 80 ----ARVPQAVGGRRAHPPKVEKDLHEKINKKERRLAIRSAIAATADPELVKARGHVFEGDELPIVVVDDFE-SLKKTKE 154 (251)
T ss_pred ----eecCccCcCCeeCCCCCCcccceecCHHHHHHHHHHHHHHhcchhhhhhcccccccccccEEEEeCCC-CCCCHHH
Confidence 69999999999999999 999999999999999999999999988 799999999 9999999
Q ss_pred HHHHHHhccCC---------------------------CcEEEEeCCCcchHHHHHHhcCCceeEEecCCCChhhhccC-
Q 021591 236 IVNYYNQMENT---------------------------KKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQH- 287 (310)
Q Consensus 236 ~~~~Lk~l~~~---------------------------k~~LiV~~~~~d~nl~~a~RNip~V~v~~~~~LNvydLL~~- 287 (310)
++++|++++.. +++|||++ + ++++++|+||||+|+++++++||+||||++
T Consensus 155 ~~~~Lk~l~~~~~~~~~~~~~~~~~~kgk~~~r~~~~~~~~LiV~~-~-~~~l~~s~RNi~~V~v~~~~~lNv~dLl~~~ 232 (251)
T TIGR03672 155 VRELLEALGVYDDIERAKEGKKIRAGKGKMRGRRYKEPKSVLIVVG-D-DSGISKAARNLPGVDVVTVNNLNVEHLAPGG 232 (251)
T ss_pred HHHHHHHcCCccccchhhccceeeccccccccccccCCCccEEEEc-C-CcchhhhhcCCCCCEEEecCCccHHHhhCcC
Confidence 99999998852 35999984 4 689999999999999999999999999999
Q ss_pred ---CcEEEeHHHHHHHHHH
Q 021591 288 ---DTLVMSRDAVNKIVDR 303 (310)
Q Consensus 288 ---~~lViT~~Al~~Leer 303 (310)
+.||||++|++.||+|
T Consensus 233 ~~~~~vv~t~~Al~~l~e~ 251 (251)
T TIGR03672 233 HPGRLTVWTESAIEKLEER 251 (251)
T ss_pred CCCCeEEEEHHHHHHHhcC
Confidence 6799999999999984
No 10
>PLN00185 60S ribosomal protein L4-1; Provisional
Probab=100.00 E-value=1.6e-53 Score=415.23 Aligned_cols=204 Identities=26% Similarity=0.306 Sum_probs=187.6
Q ss_pred eeeEEEccCC----CeeeeEEcCccccCCCCchhHHHHHHHHHHHHcccCCCCC-----ceeeeecCCCcCcc---ccC-
Q 021591 99 LVIPVTNFFN----EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHST-----KTISEVSGTGKKPW---RQK- 165 (310)
Q Consensus 99 ~~v~V~n~~g----~~~g~i~Lp~~VF~~~~r~dllh~vV~~q~anrRqGta~t-----KtRaEV~GsGrKp~---rQK- 165 (310)
..|+|||.+| +..|+|+|| +||+.|+|+||||+||.++++|+||||+.+ +|++|+||+||||| |||
T Consensus 7 p~v~V~~~~g~~~~~~~~~v~Lp-~VF~~piR~dlv~~v~~~~~~n~RQp~~~~~~AG~qtsAeswGtGR~vaRiPR~kg 85 (405)
T PLN00185 7 PLVSVQSLDGDMATDKSATVALP-DVMTAPIRPDIVNFVHTNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPG 85 (405)
T ss_pred CeeEEEcCCCCccccccceeehH-HHhCCCCCHHHHHHHHHHHHHhccCCCCCCcccCCcceeeecCCCCCceecccccC
Confidence 4699999999 678999999 999999999999999999999999999998 99999999999999 999
Q ss_pred -CCCccCCCCCCCCcccCcccccCCCc--ccccccccHHHHHHHHHHHHHHHHH------cC-Ce-------EEeccCCC
Q 021591 166 -GTGRARHGTLRGPQFRGGTTMHGPKP--RSHAIKLNKKVRRLGLKIALSARAA------EG-KL-------LVFEDLEV 228 (310)
Q Consensus 166 -GTGrAR~Gs~rsP~~rGGG~afGPkP--R~y~~klNKK~rrlAlrsALSaK~~------~g-~L-------iVVd~l~~ 228 (310)
||||||||+. |+|+|||++|||+| |+|+++||+|+|++|++||||+++. .| +| +||||+..
T Consensus 86 gGT~RAgqGa~--~~~~rGGr~FgP~p~~R~~~~KvNkK~rRlAl~SALAa~a~~~lV~arGH~i~~v~e~pLVV~d~~e 163 (405)
T PLN00185 86 GGTHRAGQGAF--GNMCRGGRMFAPTKTWRRWHRKVNVNQKRYAVVSALAASAVPSLVMARGHKIENVPEVPLVVSDSAE 163 (405)
T ss_pred CCCCcCCccCc--CCcCCCCeeCCCCCCccccccccCHHHHHHHHHHHHHhhccchhhhcccccccccccCCEEEEeCcc
Confidence 9999999998 99999999999999 9999999999999999999999993 44 22 57777777
Q ss_pred CCCChHHHHHHHHhccCC---------------------------CcEEEEeCCCcchHHHHHHhcCCceeEEecCCCCh
Q 021591 229 PSHKTKFIVNYYNQMENT---------------------------KKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNV 281 (310)
Q Consensus 229 ~~~KTK~~~~~Lk~l~~~---------------------------k~~LiV~~~~~d~nl~~a~RNip~V~v~~~~~LNv 281 (310)
+.+|||+++++|++++.. +++|||++ +.++++.+|+||||+|+++++++||+
T Consensus 164 ~~~KTK~av~~Lk~lg~~~d~~k~~~s~~iRaGkGKmR~Rr~~~~kg~LIV~~-~~~~~l~kA~RNIPgV~v~~v~~LNv 242 (405)
T PLN00185 164 SIEKTSAAIKILKQIGAYADVEKAKDSKGIRAGKGKMRNRRYVSRKGPLVVYG-TEGAKIVKAFRNIPGVELCSVDRLNL 242 (405)
T ss_pred CCcCHHHHHHHHHHcCCcccchhhhcccccccccccccccccccCCceEEEEc-CCchhhhhhhcCCCCCeEEecCCccH
Confidence 889999999999998752 34899984 56778999999999999999999999
Q ss_pred hhhccCC----cEEEeHHHHHHHHHHhcC
Q 021591 282 YSILQHD----TLVMSRDAVNKIVDRMHT 306 (310)
Q Consensus 282 ydLL~~~----~lViT~~Al~~Leerl~~ 306 (310)
|||++++ .||||++||+.|+++|++
T Consensus 243 ~dLapggh~gr~vI~TesA~~~Lee~~g~ 271 (405)
T PLN00185 243 LQLAPGGHLGRFVIWTKSAFEKLDSIYGT 271 (405)
T ss_pred HHHhccCCCCCEEEEEhHHHHHHHHHhcc
Confidence 9999988 699999999999999985
No 11
>PTZ00428 60S ribosomal protein L4; Provisional
Probab=100.00 E-value=1.2e-49 Score=386.41 Aligned_cols=204 Identities=24% Similarity=0.290 Sum_probs=169.0
Q ss_pred ceeeEEEccCC-CeeeeEEcCccccCCCCchhHHHHHHHHHHHHcccCCCCCceee-----eecCCCcCcc---ccC--C
Q 021591 98 DLVIPVTNFFN-EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTIS-----EVSGTGKKPW---RQK--G 166 (310)
Q Consensus 98 ~~~v~V~n~~g-~~~g~i~Lp~~VF~~~~r~dllh~vV~~q~anrRqGta~tKtRa-----EV~GsGrKp~---rQK--G 166 (310)
-++|+|||.+| +..|+++|| +||+.|+|+||||+||.+|++|+||||+.+++++ |+||+||+++ ||| |
T Consensus 4 r~~v~V~~~~g~~~~~~v~Lp-~VF~~pir~dlV~~vv~~~~aN~RQgta~s~~ag~~tsakswGTGRA~aripR~kg~G 82 (381)
T PTZ00428 4 RPVVSVYSASDKSVVGTVPLP-AVFTAPIRPDLVQFVHTNMAKNRRQAYAVKPLAGMQHSAESWGTGRAVARIPRVSGGG 82 (381)
T ss_pred CCeeEEEcCCCCcccceEehH-HhhCCCCcHHHHHHHHHHHHHhccCCCCcCCCCCCCCCceecCCCCCccccccccCCC
Confidence 47899999998 678999999 8999999999999999999999999999985544 5555555555 444 4
Q ss_pred CCccCCCCCCCCcccCcccccCCCc--ccccccccHHHHHHHHHHHHHHHHH-------cCCe-------EEeccCCCCC
Q 021591 167 TGRARHGTLRGPQFRGGTTMHGPKP--RSHAIKLNKKVRRLGLKIALSARAA-------EGKL-------LVFEDLEVPS 230 (310)
Q Consensus 167 TGrAR~Gs~rsP~~rGGG~afGPkP--R~y~~klNKK~rrlAlrsALSaK~~-------~g~L-------iVVd~l~~~~ 230 (310)
|+||+||+. +| |++||++|||+| |+|+++||+|+|++|++||||+++. .++| +||||+....
T Consensus 83 T~Rs~qGa~-~n-~~rGG~~FgP~~~~R~~~~KvNkK~rR~Al~SALaa~a~~~lv~argh~i~~v~e~plVV~d~~e~~ 160 (381)
T PTZ00428 83 THRSGQGAF-GN-MCRGGRMFAPTKTWRRWHRKVNLNQKRHAVASALAASGVPALVMARGHRISNVPEVPLVVSDSVESY 160 (381)
T ss_pred CCcCccccc-CC-cCCCceEcCCCCCccccccccCHHHHHHHHHHHHHhhccchhhhcccccccccccCCEEEEcCcCCC
Confidence 444444444 33 666677999999 9999999999999999999999974 2222 5566664455
Q ss_pred CChHHHHHHHHhccCC---------------------------CcEEEEeCCCcchHHHHHHhcCCceeEEecCCCChhh
Q 021591 231 HKTKFIVNYYNQMENT---------------------------KKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYS 283 (310)
Q Consensus 231 ~KTK~~~~~Lk~l~~~---------------------------k~~LiV~~~~~d~nl~~a~RNip~V~v~~~~~LNvyd 283 (310)
+|||+++++|++++.. +++|||++ + |+++.+|+||||+|+++++++||+||
T Consensus 161 ~KTK~av~~Lk~lg~~~d~~k~~~s~~~R~gkGk~R~rr~~~~~g~LIV~~-~-d~~l~~A~RNIpgV~v~~v~~LNv~d 238 (381)
T PTZ00428 161 EKTKEAVAFLKALGAFDDVNRVNDSKKIRAGKGKMRNRRYVMRRGPLVVYA-N-DNGVTKAFRNIPGVDLCNVTRLNLLQ 238 (381)
T ss_pred CCHHHHHHHHHHcCCcccchhhhcccccccccccccccccccCCceEEEEc-C-CcchhhhhcCCCCcEEEecCCccHHH
Confidence 8999999999998752 23899983 4 78899999999999999999999999
Q ss_pred hccCC----cEEEeHHHHHHHHHHhcC
Q 021591 284 ILQHD----TLVMSRDAVNKIVDRMHT 306 (310)
Q Consensus 284 LL~~~----~lViT~~Al~~Leerl~~ 306 (310)
|++++ .||||++|+++||++|++
T Consensus 239 Lapggh~gr~vI~TesA~~~L~~~~gt 265 (381)
T PTZ00428 239 LAPGGHVGRFIIWTKSAFKKLDKIFGT 265 (381)
T ss_pred HhccCCCCCEEEEEhHHHHHHHHHhcc
Confidence 99966 699999999999999975
No 12
>KOG1475 consensus Ribosomal protein RPL1/RPL2/RL4L4 [RNA processing and modification]
Probab=99.96 E-value=4.2e-30 Score=241.90 Aligned_cols=206 Identities=23% Similarity=0.261 Sum_probs=176.9
Q ss_pred ceeeEEEccCCCee-eeEEcCccccCCCCchhHHHHHHHHHHHHcccCCCC-----CceeeeecCCCcCcc---ccCCCC
Q 021591 98 DLVIPVTNFFNEDK-GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHS-----TKTISEVSGTGKKPW---RQKGTG 168 (310)
Q Consensus 98 ~~~v~V~n~~g~~~-g~i~Lp~~VF~~~~r~dllh~vV~~q~anrRqGta~-----tKtRaEV~GsGrKp~---rQKGTG 168 (310)
...|.||+.+|+.. +.+.|| +||..|+|+||++.++.....|+||.++. .+|++|.||+||... |.+|.|
T Consensus 4 rp~vtvy~~~g~~s~~~l~lp-~vf~aPiRpdlv~~v~~~~~~n~rQpyAVs~kAG~QtSAESWGTGRAvaRiPRV~GGG 82 (363)
T KOG1475|consen 4 RPLVTVYSLDGEASKKTLTLP-AVFSAPIRPDLVNFVHTQVRKNRRQPYAVSEKAGHQTSAESWGTGRAVARIPRVGGGG 82 (363)
T ss_pred cceeeEEeccccccccccccc-ceeccCCcHHHHHHHHHHHhhccccchhhhhhhccccchhhcccccceecccccCCCC
Confidence 35789999999875 569999 99999999999999999999999998764 899999999999987 677888
Q ss_pred ccCCCCCCCCcccCcccccCCC--cccccccccHHHHHHHHHHHHHHHHHc------C-------C-eEEeccCCCCCCC
Q 021591 169 RARHGTLRGPQFRGGTTMHGPK--PRSHAIKLNKKVRRLGLKIALSARAAE------G-------K-LLVFEDLEVPSHK 232 (310)
Q Consensus 169 rAR~Gs~rsP~~rGGG~afGPk--PR~y~~klNKK~rrlAlrsALSaK~~~------g-------~-LiVVd~l~~~~~K 232 (310)
..|.|+..-..++.||.+|.|. .|.|+.++|..+++.|+.||+++.+.. | + .+||+|-....-|
T Consensus 83 T~RsGQgAFgNmCR~GrMfaPtKt~RrW~rkVn~n~Kr~A~asaiaasavpaLv~arGHrIe~VpelPlVVsd~ve~~~K 162 (363)
T KOG1475|consen 83 THRSGQGAFGNMCRGGRMFAPTKTWRRWHRKVNENEKRYAIASAIAASAVPALVMARGHRIEEVPELPLVVSDKVESFRK 162 (363)
T ss_pred cccccchhhhhhcccccccCchhhHHHHhhhhhhhhhhhHHHhhhhhhhhhHHHHhcCccccccccCceEeehhhHHHHh
Confidence 8888887766777778888886 499999999999999999999998761 2 2 2666665556789
Q ss_pred hHHHHHHHHhccC---------------------------CCcEEEEeCCCcchHHHHHHhcCCceeEEecCCCChhhhc
Q 021591 233 TKFIVNYYNQMEN---------------------------TKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSIL 285 (310)
Q Consensus 233 TK~~~~~Lk~l~~---------------------------~k~~LiV~~~~~d~nl~~a~RNip~V~v~~~~~LNvydLL 285 (310)
||+++.+|++++. .+..|||+. .|..+.+||||||+|+++.++.||+..|.
T Consensus 163 TkeAV~~Lk~~~a~~di~kv~~S~~~RaGKGKmRNRr~~QrrGPlVVy~--Ed~~ivkAFRNIpGV~~~nV~~LnlLkLA 240 (363)
T KOG1475|consen 163 TKEAVALLKKLKAWNDIKKVYNSRRLRAGKGKMRNRRYIQRRGPLVVYN--EDNGIVKAFRNIPGVELMNVERLNLLKLA 240 (363)
T ss_pred HHHHHHHHHHhccHHHHHHHHhhcccccCccchhhhhhhhhcCCEEEEe--cCcchhhhhcCCCcceeechhhhhhhhcC
Confidence 9999999998753 146899993 46779999999999999999999999988
Q ss_pred cCC----cEEEeHHHHHHHHHHhcC
Q 021591 286 QHD----TLVMSRDAVNKIVDRMHT 306 (310)
Q Consensus 286 ~~~----~lViT~~Al~~Leerl~~ 306 (310)
..+ .||||++|+++|++.|++
T Consensus 241 PGghlGRfvIWTeSAF~kLd~i~Gs 265 (363)
T KOG1475|consen 241 PGGHLGRFVIWTESAFEKLDSIYGS 265 (363)
T ss_pred CCcccceeEEeehHHhhhHHhhccc
Confidence 877 899999999999999884
No 13
>PTZ00428 60S ribosomal protein L4; Provisional
Probab=95.39 E-value=0.0096 Score=59.37 Aligned_cols=55 Identities=31% Similarity=0.357 Sum_probs=39.3
Q ss_pred CCCcCccccCCCCccCC--------CCCCCCcccCcccccCCCc---cccc-----ccccHHHHHHHHHHHHHHHHHcC
Q 021591 156 GTGKKPWRQKGTGRARH--------GTLRGPQFRGGTTMHGPKP---RSHA-----IKLNKKVRRLGLKIALSARAAEG 218 (310)
Q Consensus 156 GsGrKp~rQKGTGrAR~--------Gs~rsP~~rGGG~afGPkP---R~y~-----~klNKK~rrlAlrsALSaK~~~g 218 (310)
++++||| ||||||+ |+.||||= +|||-- +-|. .+..+|+=+.--+.||..-++.-
T Consensus 60 ~tsaksw---GTGRA~aripR~kg~GT~Rs~qG-----a~~n~~rGG~~FgP~~~~R~~~~KvNkK~rR~Al~SALaa~ 130 (381)
T PTZ00428 60 QHSAESW---GTGRAVARIPRVSGGGTHRSGQG-----AFGNMCRGGRMFAPTKTWRRWHRKVNLNQKRHAVASALAAS 130 (381)
T ss_pred CCCceec---CCCCCccccccccCCCCCcCccc-----ccCCcCCCceEcCCCCCccccccccCHHHHHHHHHHHHHhh
Confidence 6899999 9999998 77777761 335553 3455 35567777788888888777643
No 14
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=58.82 E-value=15 Score=32.33 Aligned_cols=68 Identities=10% Similarity=0.061 Sum_probs=41.2
Q ss_pred HcCCeEEeccCCCCCCChHHHHHHHHhc-cCCCcEEEEeCCCcchHHHHHHhcCCceeEEecCCCChhh
Q 021591 216 AEGKLLVFEDLEVPSHKTKFIVNYYNQM-ENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYS 283 (310)
Q Consensus 216 ~~g~LiVVd~l~~~~~KTK~~~~~Lk~l-~~~k~~LiV~~~~~d~nl~~a~RNip~V~v~~~~~LNvyd 283 (310)
.+.+++|+|.+-.-+-+.+.+.+.+.++ ...+.+|-+.....+..+....++.+++.++.++.-|=-+
T Consensus 94 ~~~~liviDEIG~mEl~~~~F~~~v~~~l~s~~~vi~vv~~~~~~~~l~~i~~~~~~~i~~vt~~NRd~ 162 (168)
T PF03266_consen 94 SSSDLIVIDEIGKMELKSPGFREAVEKLLDSNKPVIGVVHKRSDNPFLEEIKRRPDVKIFEVTEENRDA 162 (168)
T ss_dssp HCCHEEEE---STTCCC-CHHHHHHHHHHCTTSEEEEE--SS--SCCHHHHHTTTTSEEEE--TTTCCC
T ss_pred CCCCEEEEeccchhhhcCHHHHHHHHHHHcCCCcEEEEEecCCCcHHHHHHHhCCCcEEEEeChhHHhh
Confidence 5677999999865566777777666664 4334455555322255689999999999999988877443
No 15
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=57.84 E-value=9.9 Score=36.45 Aligned_cols=75 Identities=9% Similarity=0.149 Sum_probs=43.7
Q ss_pred CeEEeccC--CCCCCChHHHHHHHHhccCCCcEEEEeCCCcchHHHH-HHhcCCceeEEecCCCChhhhccCCcEEEeHH
Q 021591 219 KLLVFEDL--EVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKL-ATQNLHYVNVLPSVGLNVYSILQHDTLVMSRD 295 (310)
Q Consensus 219 ~LiVVd~l--~~~~~KTK~~~~~Lk~l~~~k~~LiV~~~~~d~nl~~-a~RNip~V~v~~~~~LNvydLL~~~~lViT~~ 295 (310)
+++.-|+- .++...++.+.++|+++......-+|.. -++-++.+ -+.++=+ |++++||+...
T Consensus 167 kiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~n-LH~vdlA~~Y~~Riig--------------l~~G~ivfDg~ 231 (258)
T COG3638 167 KIILADEPVASLDPESAKKVMDILKDINQEDGITVIVN-LHQVDLAKKYADRIIG--------------LKAGRIVFDGP 231 (258)
T ss_pred CEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEE-echHHHHHHHHhhheE--------------ecCCcEEEeCC
Confidence 56666653 4667778999999999864333232221 12323332 2233222 67888888777
Q ss_pred H----HHHHHHHhcCCC
Q 021591 296 A----VNKIVDRMHTPI 308 (310)
Q Consensus 296 A----l~~Leerl~~~i 308 (310)
+ -+.+++.|+.++
T Consensus 232 ~~el~~~~~~~iYg~~~ 248 (258)
T COG3638 232 ASELTDEALDEIYGNEI 248 (258)
T ss_pred hhhhhHHHHHHHhcccc
Confidence 7 456666666554
No 16
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=49.76 E-value=1.4e+02 Score=27.28 Aligned_cols=85 Identities=16% Similarity=0.083 Sum_probs=52.9
Q ss_pred ccccHHHHHHHHHHHHHHHHHcCCeEEeccCCCCCCChHHHHHHHHhccCCCcEEEEe-CCCcchHHHHHHhcCCceeE-
Q 021591 196 IKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCD-GGCIHEKLKLATQNLHYVNV- 273 (310)
Q Consensus 196 ~klNKK~rrlAlrsALSaK~~~g~LiVVd~l~~~~~KTK~~~~~Lk~l~~~k~~LiV~-~~~~d~nl~~a~RNip~V~v- 273 (310)
|-+|-+.-.--.--||.-.+..-+++|||...--+-|++.+.+.+...-.+.+.||.+ .-.....+..-.+.+..+-+
T Consensus 79 Y~V~v~~le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr~P~v~~ik~~~~v~v~ 158 (179)
T COG1618 79 YGVNVEGLEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSRHPLVQRIKKLGGVYVF 158 (179)
T ss_pred EEeeHHHHHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEecccCChHHHHhhhcCCEEEE
Confidence 4445444332223445444455689999998666779999999988854334445443 22223448888999999888
Q ss_pred EecCCCC
Q 021591 274 LPSVGLN 280 (310)
Q Consensus 274 ~~~~~LN 280 (310)
+.++.=|
T Consensus 159 lt~~NR~ 165 (179)
T COG1618 159 LTPENRN 165 (179)
T ss_pred Eccchhh
Confidence 5555444
No 17
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=49.20 E-value=95 Score=33.27 Aligned_cols=94 Identities=18% Similarity=0.193 Sum_probs=57.2
Q ss_pred CCCCCCcccCcccccCCCccc--ccccccHHHHHHHHHHHHHHHHHcCCeEEeccCCCCCCChHH-HHHHHHhccCCCcE
Q 021591 173 GTLRGPQFRGGTTMHGPKPRS--HAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKF-IVNYYNQMENTKKV 249 (310)
Q Consensus 173 Gs~rsP~~rGGG~afGPkPR~--y~~klNKK~rrlAlrsALSaK~~~g~LiVVd~l~~~~~KTK~-~~~~Lk~l~~~k~~ 249 (310)
+-.+-|.|+-+|.++.|.||- ..+.+.--.++.+|.-+|...+ +-.++|+-+ ..|+-+ +++.|.+++. .+
T Consensus 472 ~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~~-~ppiIIFvN----~kk~~d~lAk~LeK~g~--~~ 544 (673)
T KOG0333|consen 472 SYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESNF-DPPIIIFVN----TKKGADALAKILEKAGY--KV 544 (673)
T ss_pred HHhhCCeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHhCC-CCCEEEEEe----chhhHHHHHHHHhhccc--eE
Confidence 346789999999999999964 4445555555788888887652 334555443 223333 3345555553 46
Q ss_pred EEEeCC---CcchHHHHHHhc-CCceeE
Q 021591 250 LLCDGG---CIHEKLKLATQN-LHYVNV 273 (310)
Q Consensus 250 LiV~~~---~~d~nl~~a~RN-ip~V~v 273 (310)
...+++ +-.++....+|+ -.+|-|
T Consensus 545 ~tlHg~k~qeQRe~aL~~fr~~t~dIlV 572 (673)
T KOG0333|consen 545 TTLHGGKSQEQRENALADFREGTGDILV 572 (673)
T ss_pred EEeeCCccHHHHHHHHHHHHhcCCCEEE
Confidence 666753 234556666776 344433
No 18
>PHA02324 hypothetical protein
Probab=40.04 E-value=22 Score=25.38 Aligned_cols=28 Identities=36% Similarity=0.548 Sum_probs=22.9
Q ss_pred HHcccCCC-CCceeeeecCCCcCccccCC
Q 021591 139 AKRQQGTH-STKTISEVSGTGKKPWRQKG 166 (310)
Q Consensus 139 anrRqGta-~tKtRaEV~GsGrKp~rQKG 166 (310)
.+-|||.- .||-.+..+.+-|||||.-|
T Consensus 18 K~TRQG~G~~TKysATsRN~akK~YRGQG 46 (47)
T PHA02324 18 KKTRQGQGKNTKYSATSRNNAKKPYRGQG 46 (47)
T ss_pred ccccccCCccceeeeeccccccCcccCCC
Confidence 45688865 49999999999999998654
No 19
>PF13514 AAA_27: AAA domain
Probab=39.09 E-value=58 Score=36.83 Aligned_cols=63 Identities=19% Similarity=0.417 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHH-cC-Ce-EEeccC--CCCCCChHHHHHHHHhccCCCcEEEEeCCCcchHHHHHHhcC
Q 021591 203 RRLGLKIALSARAA-EG-KL-LVFEDL--EVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNL 268 (310)
Q Consensus 203 rrlAlrsALSaK~~-~g-~L-iVVd~l--~~~~~KTK~~~~~Lk~l~~~k~~LiV~~~~~d~nl~~a~RNi 268 (310)
--+|||.|+...+. .+ .+ +|+||. +++...++.++++|..+....=|++.+ ..+.+...++.+
T Consensus 1034 LYLALRLA~~e~~~~~~~~lP~IlDD~fvnfDd~R~~~~l~~L~~ls~~~QVI~FT---ch~~l~~~a~~~ 1101 (1111)
T PF13514_consen 1034 LYLALRLALAELLAEQGEPLPFILDDIFVNFDDERARAALELLAELSRRRQVIYFT---CHEHLVELAREV 1101 (1111)
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEeeCCccccCHHHHHHHHHHHHHhccCCeEEEEe---ccHHHHHHHHHh
Confidence 45899999999993 33 23 888986 567888999999999987544466555 244555555554
No 20
>PRK05642 DNA replication initiation factor; Validated
Probab=34.28 E-value=48 Score=30.39 Aligned_cols=96 Identities=17% Similarity=0.207 Sum_probs=52.8
Q ss_pred HHHHHHHcCCeEEeccCCCCCCChH---HHHHHHHhccCCCcEEEEeCCCcchHH-----HHHHhcCCc--eeEEecCCC
Q 021591 210 ALSARAAEGKLLVFEDLEVPSHKTK---FIVNYYNQMENTKKVLLCDGGCIHEKL-----KLATQNLHY--VNVLPSVGL 279 (310)
Q Consensus 210 ALSaK~~~g~LiVVd~l~~~~~KTK---~~~~~Lk~l~~~k~~LiV~~~~~d~nl-----~~a~RNip~--V~v~~~~~L 279 (310)
.+..++.+.+++++||+.....+.. ++..+++.+-..++.+|+.+...+..+ .+.+|---+ +++-+.+.-
T Consensus 90 ~~~~~~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e 169 (234)
T PRK05642 90 ELLDNLEQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDE 169 (234)
T ss_pred HHHHhhhhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHH
Confidence 3445566678999999976544432 366677665433445666542212111 233443222 222233333
Q ss_pred Chhhhcc----CCcEEEeHHHHHHHHHHhc
Q 021591 280 NVYSILQ----HDTLVMSRDAVNKIVDRMH 305 (310)
Q Consensus 280 NvydLL~----~~~lViT~~Al~~Leerl~ 305 (310)
....+|+ ...+.++++++++|-++..
T Consensus 170 ~~~~il~~ka~~~~~~l~~ev~~~L~~~~~ 199 (234)
T PRK05642 170 DKLRALQLRASRRGLHLTDEVGHFILTRGT 199 (234)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHhcC
Confidence 3344444 3358899999999987764
No 21
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=31.94 E-value=63 Score=29.43 Aligned_cols=96 Identities=17% Similarity=0.289 Sum_probs=49.8
Q ss_pred HHHHHHcCCeEEeccCCCCCCCh---HHHHHHHHhccCCCcEEEEeCCCcchHH-----HHHHhcC--CceeEEecCCCC
Q 021591 211 LSARAAEGKLLVFEDLEVPSHKT---KFIVNYYNQMENTKKVLLCDGGCIHEKL-----KLATQNL--HYVNVLPSVGLN 280 (310)
Q Consensus 211 LSaK~~~g~LiVVd~l~~~~~KT---K~~~~~Lk~l~~~k~~LiV~~~~~d~nl-----~~a~RNi--p~V~v~~~~~LN 280 (310)
+-..+..-++++|||+..-..|. ..+..+++.+...++.+|+.++.....+ .+.+|=- ..+.+-+++.=.
T Consensus 91 ~~~~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~ 170 (219)
T PF00308_consen 91 FKDRLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDED 170 (219)
T ss_dssp HHHHHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHH
T ss_pred hhhhhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHH
Confidence 33555666899999987543332 3456667765433445555542111111 1223322 234555555544
Q ss_pred hhhhcc----CCcEEEeHHHHHHHHHHhcC
Q 021591 281 VYSILQ----HDTLVMSRDAVNKIVDRMHT 306 (310)
Q Consensus 281 vydLL~----~~~lViT~~Al~~Leerl~~ 306 (310)
...+|. ...+.+++++++.|.+++..
T Consensus 171 r~~il~~~a~~~~~~l~~~v~~~l~~~~~~ 200 (219)
T PF00308_consen 171 RRRILQKKAKERGIELPEEVIEYLARRFRR 200 (219)
T ss_dssp HHHHHHHHHHHTT--S-HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHhhcC
Confidence 555554 34888999999999988754
No 22
>PRK09087 hypothetical protein; Validated
Probab=30.84 E-value=1.2e+02 Score=27.77 Aligned_cols=87 Identities=14% Similarity=0.171 Sum_probs=49.1
Q ss_pred CeEEeccCCCCCCChHHHHHHHHhccCCCcEEEEeCCCcchHHH-----HHHh--cCCceeEEecCCCChhhhcc----C
Q 021591 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLK-----LATQ--NLHYVNVLPSVGLNVYSILQ----H 287 (310)
Q Consensus 219 ~LiVVd~l~~~~~KTK~~~~~Lk~l~~~k~~LiV~~~~~d~nl~-----~a~R--Nip~V~v~~~~~LNvydLL~----~ 287 (310)
.++++||+..-.....++..+++.+...++.+++.+...+..+. +.+| .-.-+++-+.+.=....+|+ .
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~ 168 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFAD 168 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHH
Confidence 58889998764444566777777764434456665432222111 1122 22333344444333444444 4
Q ss_pred CcEEEeHHHHHHHHHHhc
Q 021591 288 DTLVMSRDAVNKIVDRMH 305 (310)
Q Consensus 288 ~~lViT~~Al~~Leerl~ 305 (310)
..+.++++++++|-+++.
T Consensus 169 ~~~~l~~ev~~~La~~~~ 186 (226)
T PRK09087 169 RQLYVDPHVVYYLVSRME 186 (226)
T ss_pred cCCCCCHHHHHHHHHHhh
Confidence 468899999999988765
No 23
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=30.52 E-value=1.4e+02 Score=28.01 Aligned_cols=57 Identities=14% Similarity=0.283 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHcCCeEEeccC--CCCCCChHHHHHHHHhccC--CCcEEEEeCCCcchHHHHH
Q 021591 202 VRRLGLKIALSARAAEGKLLVFEDL--EVPSHKTKFIVNYYNQMEN--TKKVLLCDGGCIHEKLKLA 264 (310)
Q Consensus 202 ~rrlAlrsALSaK~~~g~LiVVd~l--~~~~~KTK~~~~~Lk~l~~--~k~~LiV~~~~~d~nl~~a 264 (310)
..|.|+.-||.. +-+|++.|+- .++....+.+.++|.++.. +..+++|+ +|..+...
T Consensus 148 qQRVAIARAL~~---~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VT---Hd~~lA~~ 208 (226)
T COG1136 148 QQRVAIARALIN---NPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVT---HDPELAKY 208 (226)
T ss_pred HHHHHHHHHHhc---CCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEc---CCHHHHHh
Confidence 345777777754 5578888874 5778888999999999853 33455555 46655543
No 24
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=30.22 E-value=40 Score=26.64 Aligned_cols=87 Identities=14% Similarity=0.190 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHcCCeEEeccCCCCCCChHHHHHHHHhccCCCcEEEEeCCCcch----HHHHHHhcCCceeEEecCCCC
Q 021591 205 LGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHE----KLKLATQNLHYVNVLPSVGLN 280 (310)
Q Consensus 205 lAlrsALSaK~~~g~LiVVd~l~~~~~KTK~~~~~Lk~l~~~k~~LiV~~~~~d~----nl~~a~RNip~V~v~~~~~LN 280 (310)
..+.+.+......-+++||||.. .++|.++++-+.+ ....+-++.- +.+. +...+.+...+ +
T Consensus 15 ~~l~sl~~q~~~~~eiivvdd~s--~d~~~~~~~~~~~--~~~~i~~i~~-~~n~g~~~~~n~~~~~a~~------~--- 80 (169)
T PF00535_consen 15 RTLESLLKQTDPDFEIIVVDDGS--TDETEEILEEYAE--SDPNIRYIRN-PENLGFSAARNRGIKHAKG------E--- 80 (169)
T ss_dssp HHHHHHHHHSGCEEEEEEEECS---SSSHHHHHHHHHC--CSTTEEEEEH-CCCSHHHHHHHHHHHH--S------S---
T ss_pred HHHHHHhhccCCCEEEEEecccc--ccccccccccccc--cccccccccc-cccccccccccccccccce------e---
Confidence 45555555533345799999876 5677766555443 1234555542 2221 22223222222 2
Q ss_pred hhhhccCCcEEEeHHHHHHHHHHhcC
Q 021591 281 VYSILQHDTLVMSRDAVNKIVDRMHT 306 (310)
Q Consensus 281 vydLL~~~~lViT~~Al~~Leerl~~ 306 (310)
|=++-.+..+++...++.|.+.+..
T Consensus 81 -~i~~ld~D~~~~~~~l~~l~~~~~~ 105 (169)
T PF00535_consen 81 -YILFLDDDDIISPDWLEELVEALEK 105 (169)
T ss_dssp -EEEEEETTEEE-TTHHHHHHHHHHH
T ss_pred -EEEEeCCCceEcHHHHHHHHHHHHh
Confidence 3344445566677777777776653
No 25
>PRK06893 DNA replication initiation factor; Validated
Probab=29.28 E-value=1e+02 Score=27.99 Aligned_cols=92 Identities=18% Similarity=0.295 Sum_probs=50.9
Q ss_pred HHHcCCeEEeccCCCCCCC---hHHHHHHHHhccCCCc-EEEEeCCCcchHH-----HHHHh--cCCceeEEecCCCChh
Q 021591 214 RAAEGKLLVFEDLEVPSHK---TKFIVNYYNQMENTKK-VLLCDGGCIHEKL-----KLATQ--NLHYVNVLPSVGLNVY 282 (310)
Q Consensus 214 K~~~g~LiVVd~l~~~~~K---TK~~~~~Lk~l~~~k~-~LiV~~~~~d~nl-----~~a~R--Nip~V~v~~~~~LNvy 282 (310)
.+.+-+++++||+..-..+ ...+..+++.+...++ ++++.+......+ .+.+| .-..+++-+++.-...
T Consensus 88 ~~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~ 167 (229)
T PRK06893 88 NLEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKI 167 (229)
T ss_pred hcccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHH
Confidence 4456689999998753333 2356666766543333 4555532211111 12233 2233344444444445
Q ss_pred hhcc----CCcEEEeHHHHHHHHHHhc
Q 021591 283 SILQ----HDTLVMSRDAVNKIVDRMH 305 (310)
Q Consensus 283 dLL~----~~~lViT~~Al~~Leerl~ 305 (310)
.+|+ ...+.++++++++|-+++.
T Consensus 168 ~iL~~~a~~~~l~l~~~v~~~L~~~~~ 194 (229)
T PRK06893 168 IVLQRNAYQRGIELSDEVANFLLKRLD 194 (229)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhcc
Confidence 5555 4478999999999988765
No 26
>PRK13695 putative NTPase; Provisional
Probab=29.09 E-value=2.1e+02 Score=24.43 Aligned_cols=67 Identities=12% Similarity=0.040 Sum_probs=39.1
Q ss_pred cCCeEEeccCCCCCCChHHHHHHHHhc-cCCCcEEEEeCCCcchHHHHHHhcCCceeEEecCCCChhh
Q 021591 217 EGKLLVFEDLEVPSHKTKFIVNYYNQM-ENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYS 283 (310)
Q Consensus 217 ~g~LiVVd~l~~~~~KTK~~~~~Lk~l-~~~k~~LiV~~~~~d~nl~~a~RNip~V~v~~~~~LNvyd 283 (310)
..+++++|++...+..+..+.+.+.++ .....++++........+..-...++.+.+..+..-|=-.
T Consensus 96 ~~~~lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~~~r~~ 163 (174)
T PRK13695 96 EADVIIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRRSVHPFVQEIKSRPGGRVYELTPENRDS 163 (174)
T ss_pred CCCEEEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECchhhHHHHHHHhccCCcEEEEEcchhhhh
Confidence 568999998644445566666666664 3334455555221112344456677888887776655443
No 27
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=26.94 E-value=2.6e+02 Score=26.63 Aligned_cols=95 Identities=16% Similarity=0.180 Sum_probs=46.2
Q ss_pred ccccccHHHHHHHHHHHHHHHHHcCCeEEeccCCCCCCChHHHHHHHHhccCCCcEEEEeCCCcchHHHHH-HhcCCcee
Q 021591 194 HAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLA-TQNLHYVN 272 (310)
Q Consensus 194 y~~klNKK~rrlAlrsALSaK~~~g~LiVVd~l~~~~~KTK~~~~~Lk~l~~~k~~LiV~~~~~d~nl~~a-~RNip~V~ 272 (310)
|...=+.|.-|.+++++....+..+.++|+|+..--..-=-++..+-++.+..--++.+. .. +..+ .+|.
T Consensus 47 y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~-~~----~e~~~~~N~---- 117 (270)
T PF08433_consen 47 YADSKKEKEARGSLKSAVERALSKDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCD-CP----LETCLQRNS---- 117 (270)
T ss_dssp S--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE-------HHHHHHHHH----
T ss_pred hhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEEC-CC----HHHHHHhhh----
Confidence 555556778889999999988888899999987642222234445555554322233333 11 2222 1221
Q ss_pred EEecCCCChhhhccCCcEEEeHHHHHHHHHHhcCCCC
Q 021591 273 VLPSVGLNVYSILQHDTLVMSRDAVNKIVDRMHTPIN 309 (310)
Q Consensus 273 v~~~~~LNvydLL~~~~lViT~~Al~~Leerl~~~i~ 309 (310)
.+.+.--++++.++.|..||..|-.
T Consensus 118 ------------~R~~~~~~~~e~i~~m~~RfE~P~~ 142 (270)
T PF08433_consen 118 ------------KRPEPERYPEETIDDMIQRFEEPDP 142 (270)
T ss_dssp ------------HTT-S--S-HHHHHHHHHH---TTS
T ss_pred ------------ccCCCCCCCHHHHHHHHHHhcCCCC
Confidence 1111111778888888888877743
No 28
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=25.48 E-value=97 Score=27.37 Aligned_cols=66 Identities=11% Similarity=0.253 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEeccCC--CCCCChHHHHHHHHhccCCCcEEEEeCCCcchHHHHHHhcCCc
Q 021591 201 KVRRLGLKIALSARAAEGKLLVFEDLE--VPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHY 270 (310)
Q Consensus 201 K~rrlAlrsALSaK~~~g~LiVVd~l~--~~~~KTK~~~~~Lk~l~~~k~~LiV~~~~~d~nl~~a~RNip~ 270 (310)
+.-.+||..|+.. .....++++|+.. ++....+.+.++|+.+....-++|++ .++.+...+.++=+
T Consensus 143 ~~~~Lal~lA~~~-~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~T---h~~~~~~~a~~~~~ 210 (220)
T PF02463_consen 143 SLVALALLLALQR-YKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITT---HNPEMFEDADKLIG 210 (220)
T ss_dssp HHHHHHHHHHHHT-CS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE----S-HHHHTT-SEEEE
T ss_pred ccccccccccccc-ccccccccccccccccccccccccccccccccccccccccc---cccccccccccccc
Confidence 3344555555322 2344688999874 66677888889999886433344443 45656555554433
No 29
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=24.66 E-value=5.6e+02 Score=23.80 Aligned_cols=62 Identities=11% Similarity=-0.010 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHcCCeEEeccCCCCCCChHHHHHHHHhccCCCcEEEEeCCCcchHHHHHHhcCCceeEEecC
Q 021591 206 GLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277 (310)
Q Consensus 206 AlrsALSaK~~~g~LiVVd~l~~~~~KTK~~~~~Lk~l~~~k~~LiV~~~~~d~nl~~a~RNip~V~v~~~~ 277 (310)
++.-+-+.-+.+|+.+.+|+-. -+-.+++.|.+ .+.+-||+ .+-++.....+-|+++++-.-
T Consensus 81 ~IA~~Aa~lI~~g~tIflD~Gt----T~~~la~~L~~---~~~ltvvT---nsl~i~~~l~~~~~~~villG 142 (252)
T PRK10681 81 RAAQLAATLVEPNQTLFFDCGT----TTPWIIEAIDN---ELPFTAVC---YSLNTFLALQEKPHCRAILCG 142 (252)
T ss_pred HHHHHHHhhcCCCCEEEEECCc----cHHHHHHhcCC---CCCeEEEE---CCHHHHHHHhhCCCCEEEEEC
Confidence 3333333445578888888643 23344444432 12455665 244455555555666655433
No 30
>PRK11425 PTS system N-acetylgalactosamine-specific transporter subunit IIB; Provisional
Probab=24.47 E-value=3e+02 Score=24.16 Aligned_cols=73 Identities=10% Similarity=0.116 Sum_probs=40.3
Q ss_pred hHHHHHHHHhccCCCcEEEEeCCCcchHHHHHHh-cCCceeEEecCCCChhh--hccCCcEEEeHHHHHHHHHHhcCCC
Q 021591 233 TKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQ-NLHYVNVLPSVGLNVYS--ILQHDTLVMSRDAVNKIVDRMHTPI 308 (310)
Q Consensus 233 TK~~~~~Lk~l~~~k~~LiV~~~~~d~nl~~a~R-Nip~V~v~~~~~LNvyd--LL~~~~lViT~~Al~~Leerl~~~i 308 (310)
..++++.+++.....+++++. .+ -+.+..... .++ ++-+.+-++...+ -.-.+.|.++++=++.|.+.....|
T Consensus 63 v~~a~~~l~~~~~~~~v~il~-k~-~~d~~~l~~~g~~-i~~iNvG~~~~~~g~~~i~~~v~l~~~e~~~lk~l~~~Gv 138 (157)
T PRK11425 63 LQKVIDNIHRAADRQKILLVC-KT-PADFLTLVKGGVP-VNRINVGNMHYANGKQQIAKTVSVDAGDIAAFNDLKAAGV 138 (157)
T ss_pred HHHHHHHHhccCCCceEEEEE-CC-HHHHHHHHHcCCC-CCEEEECCcccCCCCEEEecceeeCHHHHHHHHHHHHcCC
Confidence 356777777622335688887 33 344555555 343 4445544442211 0112258888888888877655443
No 31
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=24.34 E-value=1.3e+02 Score=32.45 Aligned_cols=95 Identities=18% Similarity=0.255 Sum_probs=53.7
Q ss_pred HHHHcCCeEEeccCCCCCCCh---HHHHHHHHhccCCCcEEEEeCCCcchHH-----HHHHhc--CCceeEEecCCCChh
Q 021591 213 ARAAEGKLLVFEDLEVPSHKT---KFIVNYYNQMENTKKVLLCDGGCIHEKL-----KLATQN--LHYVNVLPSVGLNVY 282 (310)
Q Consensus 213 aK~~~g~LiVVd~l~~~~~KT---K~~~~~Lk~l~~~k~~LiV~~~~~d~nl-----~~a~RN--ip~V~v~~~~~LNvy 282 (310)
.++.+-.+++|||+.+-..|. .++..+++.+...++.+||.+......+ .+.+|= --.+++-+++.=.-.
T Consensus 373 ~~y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~ 452 (617)
T PRK14086 373 RRYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRI 452 (617)
T ss_pred HHhhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHH
Confidence 455566799999997655553 4567777776443344555532111111 122222 223344444433334
Q ss_pred hhcc----CCcEEEeHHHHHHHHHHhcCC
Q 021591 283 SILQ----HDTLVMSRDAVNKIVDRMHTP 307 (310)
Q Consensus 283 dLL~----~~~lViT~~Al~~Leerl~~~ 307 (310)
.||+ ...+.++++.+++|-+++...
T Consensus 453 aIL~kka~~r~l~l~~eVi~yLa~r~~rn 481 (617)
T PRK14086 453 AILRKKAVQEQLNAPPEVLEFIASRISRN 481 (617)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHhccCC
Confidence 4443 347899999999998887643
No 32
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=21.11 E-value=3.5e+02 Score=25.81 Aligned_cols=87 Identities=11% Similarity=0.129 Sum_probs=47.1
Q ss_pred cCCeEEeccCCCCCCChHHHHHHHHhccCCCcEEEEeCCC--cchHHHHHHhcCCceeEEecCCCC-------hhhhccC
Q 021591 217 EGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGC--IHEKLKLATQNLHYVNVLPSVGLN-------VYSILQH 287 (310)
Q Consensus 217 ~g~LiVVd~l~~~~~KTK~~~~~Lk~l~~~k~~LiV~~~~--~d~nl~~a~RNip~V~v~~~~~LN-------vydLL~~ 287 (310)
+.+++||.+.. ....+.+.++|++.. ...+||+..++ .+..+.+++.-.....++....++ +.+.++.
T Consensus 81 ~~rlViv~~~~--~~~~~~L~~~l~~~~-~~~~lil~~~~~~~~~kl~k~~~~~~~~~~v~~~~~~~~~l~~~i~~~~~~ 157 (343)
T PRK06585 81 GRRLIWVRAGS--KNLAAALKALLESPP-GDAFIVIEAGDLKKGSSLRKLFETAAYAAAIPCYADDERDLARLIDDELAE 157 (343)
T ss_pred CceEEEEECCc--hhHHHHHHHHHcCCC-CCcEEEEEcCCCCcccHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHHHH
Confidence 34677777432 112234555555543 34566665433 234455555433333344433333 3344555
Q ss_pred CcEEEeHHHHHHHHHHhcC
Q 021591 288 DTLVMSRDAVNKIVDRMHT 306 (310)
Q Consensus 288 ~~lViT~~Al~~Leerl~~ 306 (310)
..+-++.+|++.|.++.+.
T Consensus 158 ~g~~i~~~a~~~L~~~~g~ 176 (343)
T PRK06585 158 AGLRITPDARALLVALLGG 176 (343)
T ss_pred CCCCCCHHHHHHHHHHhCC
Confidence 6777899999998887763
No 33
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=20.91 E-value=1.1e+02 Score=28.50 Aligned_cols=49 Identities=8% Similarity=0.308 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHcCCeEEeccC--CCCCCChHHHHHHHHhccCC--CcEEEEe
Q 021591 202 VRRLGLKIALSARAAEGKLLVFEDL--EVPSHKTKFIVNYYNQMENT--KKVLLCD 253 (310)
Q Consensus 202 ~rrlAlrsALSaK~~~g~LiVVd~l--~~~~~KTK~~~~~Lk~l~~~--k~~LiV~ 253 (310)
.+|.|+.++|+. +-+++|.|.- .++..-.+++.++++++... +.+++++
T Consensus 144 kqRvaIA~vLa~---~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~t 196 (235)
T COG1122 144 KQRVAIAGVLAM---GPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVT 196 (235)
T ss_pred eeeHHhhHHHHc---CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 367999999987 4679999974 35555678889999998654 2344444
No 34
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=20.56 E-value=1.5e+02 Score=23.28 Aligned_cols=39 Identities=21% Similarity=0.347 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHcC-------CeEEeccC--CCCCCChHHHHHHHHh
Q 021591 204 RLGLKIALSARAAEG-------KLLVFEDL--EVPSHKTKFIVNYYNQ 242 (310)
Q Consensus 204 rlAlrsALSaK~~~g-------~LiVVd~l--~~~~~KTK~~~~~Lk~ 242 (310)
-++|..||+..+... .++++|+. .++....+.++++|++
T Consensus 43 ~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 43 YLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp HHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 467777777777753 57888874 4566666777777653
Done!