Query 021591
Match_columns 310
No_of_seqs 191 out of 1203
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 06:22:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021591.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021591hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dmg_A Ribosomal protein L4; a 100.0 6E-75 2.1E-79 531.3 18.0 206 99-305 1-225 (225)
2 3v2d_F 50S ribosomal protein L 100.0 4E-73 1.4E-77 514.6 21.5 201 97-305 5-207 (210)
3 3r8s_E 50S ribosomal protein L 100.0 2.7E-73 9.3E-78 512.7 19.2 191 113-305 11-201 (201)
4 3bbo_G Ribosomal protein L4; l 100.0 3.5E-73 1.2E-77 535.6 8.6 208 97-307 51-262 (293)
5 2zjr_C 50S ribosomal protein L 100.0 1.9E-72 6.4E-77 508.6 9.8 199 100-307 3-203 (205)
6 2ftc_D Mitochondrial ribosomal 100.0 3.1E-66 1.1E-70 458.0 17.5 172 131-302 1-175 (175)
7 3j21_D 50S ribosomal protein L 100.0 2.6E-62 8.9E-67 454.6 16.9 199 99-305 1-255 (255)
8 2zkr_c 60S ribosomal protein L 100.0 2.8E-60 9.6E-65 463.4 15.3 204 97-306 4-266 (421)
9 4a17_C RPL4, ribosomal protein 100.0 3E-59 1E-63 454.9 20.9 206 97-307 3-273 (410)
10 1vq8_C 50S ribosomal protein L 100.0 1.8E-59 6.2E-64 433.7 16.1 193 99-303 1-246 (246)
11 3iz5_D 60S ribosomal protein L 100.0 7.2E-58 2.5E-62 445.9 13.5 206 97-307 5-272 (405)
12 2wwb_H 60S ribosomal protein L 100.0 4.4E-57 1.5E-61 435.5 10.6 200 98-306 3-264 (362)
13 1vq8_C 50S ribosomal protein L 46.7 13 0.00044 34.1 3.3 46 140-192 37-84 (246)
14 2wwb_H 60S ribosomal protein L 38.5 13 0.00045 35.9 2.1 49 126-174 36-89 (362)
15 1ye8_A Protein THEP1, hypothet 32.2 2.1E+02 0.0073 23.5 9.3 63 216-281 98-165 (178)
16 1mv5_A LMRA, multidrug resista 21.6 1.6E+02 0.0054 25.6 6.0 54 197-253 139-195 (243)
17 2ghi_A Transport protein; mult 20.1 1.4E+02 0.0049 26.3 5.4 54 197-253 155-211 (260)
No 1
>1dmg_A Ribosomal protein L4; alpha-beta, ribosome, RNA, S10 operon, gene regulation; HET: CIT; 1.70A {Thermotoga maritima} SCOP: c.22.1.1
Probab=100.00 E-value=6e-75 Score=531.33 Aligned_cols=206 Identities=42% Similarity=0.632 Sum_probs=147.2
Q ss_pred eeeEEEccCCCeeeeEEcCccccCCCCchhHHHHHHHHHHHHcccCCCCCceeeeecCCCcCccccCCCCccCCCCCCCC
Q 021591 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGP 178 (310)
Q Consensus 99 ~~v~V~n~~g~~~g~i~Lp~~VF~~~~r~dllh~vV~~q~anrRqGta~tKtRaEV~GsGrKp~rQKGTGrAR~Gs~rsP 178 (310)
|+++|||++|+++|+++||++||+.|+|+||||++|+||++|+|||||+||||+||||||||||||||||||||||+|||
T Consensus 1 ~~~~v~~~~g~~~g~v~L~~~vF~~~~r~dlih~~v~~~~a~~Rqgt~~tktRaEv~G~GrKp~rQKGTGrAR~Gs~rsP 80 (225)
T 1dmg_A 1 AQVDLLNVKGEKVGTLEISDFVFNIDPNYDVMWRYVDMQLSNRRAGTASTKTRGEVSGGGRKPWPQKHTGRARHGSIRSP 80 (225)
T ss_dssp CEEEEECTTSCEEEEEECCHHHHSSCCCHHHHHHHHHHHHC---------------------------------------
T ss_pred CeeEEEcCCCCEeeEEEcCHHHhCCCccHHHHHHHHHHHHHhccCCccccceeeEeecCCCCCCCCCCCCccccccccCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcccccCCCcccccccccHHHHHHHHHHHHHHHHHcCCeEEeccCCCCCCChHHHHHHHHhccCC-CcEEEEeCCCc
Q 021591 179 QFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQMENT-KKVLLCDGGCI 257 (310)
Q Consensus 179 ~~rGGG~afGPkPR~y~~klNKK~rrlAlrsALSaK~~~g~LiVVd~l~~~~~KTK~~~~~Lk~l~~~-k~~LiV~~~~~ 257 (310)
+|||||++|||+||+|+++||||+|++||++|||+|+.+++|+|||+++++.+|||+++++|+++++. +++|||++ +.
T Consensus 81 ~~rGGG~~fgPkpR~~~~klnkK~rrlAl~sALs~k~~~~~LvVvd~~~~~~~KTK~~~~~L~~l~~~~~~~LiV~~-~~ 159 (225)
T 1dmg_A 81 IWRHGGVVHGPKPRDWSKKLNKKMKKLALRSALSVKYRENKLLVLDDLKLERPKTKSLKEILQNLQLSDKKTLIVLP-WK 159 (225)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCSSCCHHHHHHHHHHTTCTTSCEEEEEC-CC
T ss_pred ceecCceecCCcCccccccCCHHHHHHHHHHHHHHHHhCCCEEEEeecccCCCCHHHHHHHHHHcCCCCCCEEEEEC-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999975 78999984 45
Q ss_pred ch---HHHHHHhcCCceeEEecCC---------------CChhhhccCCcEEEeHHHHHHHHHHhc
Q 021591 258 HE---KLKLATQNLHYVNVLPSVG---------------LNVYSILQHDTLVMSRDAVNKIVDRMH 305 (310)
Q Consensus 258 d~---nl~~a~RNip~V~v~~~~~---------------LNvydLL~~~~lViT~~Al~~Leerl~ 305 (310)
|+ |+.+|+||||+|+++++++ |||||||++++||||++||++|||+|+
T Consensus 160 ~~~~~n~~~a~RNip~v~v~~~~~~~~~~~~~~~~~~~~lNv~dll~~~~lv~t~~Al~~lee~l~ 225 (225)
T 1dmg_A 160 EEGYMNVKLSGRNLPDVKVIIADNPNNSKNGEKAVRIDGLNVFDMLKYDYLVLTRDMVSKIEEVLG 225 (225)
T ss_dssp SHHHHHHHHHHTTCTTEEEEECCCCSSCCSSCCCCCCTTCCHHHHHHSSEEEEEHHHHHHHHHHHC
T ss_pred ccchHHHHHHHhCCCCCEEEecCCcccccccccccCcCcEEHHHHhCCCcEEEeHHHHHHHHHHhC
Confidence 78 9999999999999999999 999999999999999999999999984
No 2
>3v2d_F 50S ribosomal protein L4; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_F 2hgj_F 2hgu_F 2j03_F 2jl6_F 2jl8_F 2v47_F 2v49_F 2wdi_F 2wdj_F 2wdl_F 2wdn_F 2wh2_F 2wh4_F 2wrj_F 2wrl_F 2wro_F 2wrr_F 2x9s_F 2x9u_F ...
Probab=100.00 E-value=4e-73 Score=514.64 Aligned_cols=201 Identities=42% Similarity=0.610 Sum_probs=195.2
Q ss_pred cceeeEEEccCCCeeeeEEcCccccCCCCchhHHHHHHHHHHHHcccCCCCCceeeeecCCCcCccccCCCCccCCCCCC
Q 021591 97 QDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLR 176 (310)
Q Consensus 97 ~~~~v~V~n~~g~~~g~i~Lp~~VF~~~~r~dllh~vV~~q~anrRqGta~tKtRaEV~GsGrKp~rQKGTGrAR~Gs~r 176 (310)
.||+++|||++|+++|+++||+ |+|+||||++|+||++|+|||||+||||+||||||||||||||||||||||+|
T Consensus 5 ~m~~v~V~~~~G~~~g~i~L~~-----~~r~dlih~~v~~~~a~~Rqgt~~tktraEv~G~grKp~rQKGTGrAR~Gs~r 79 (210)
T 3v2d_F 5 AVYQIPVLSPSGRRELAADLPA-----EINPHLLWEVVRWQLAKRRRGTASTKTRGEVAYSGRKIWPQKHTGRARHGDIG 79 (210)
T ss_dssp -CCCCCEECSSSCCCCCCCCCS-----CCCHHHHHHHHHHHHHHTCCCCCCCCCTTTSSCCCCCSSCSSSSSSCCCCCTT
T ss_pred ccceeEEEcCCCCEeeeEecCC-----cccHHHHHHHHHHHHHhccCCccCCCccccccCCCCCCCCCCCCCccCCCccc
Confidence 4789999999999999999996 99999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCcccccCCCcccccccccHHHHHHHHHHHHHHHHHcCCeEEeccCCCCCCChHHHHHHHHhccC--CCcEEEEeC
Q 021591 177 GPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQMEN--TKKVLLCDG 254 (310)
Q Consensus 177 sP~~rGGG~afGPkPR~y~~klNKK~rrlAlrsALSaK~~~g~LiVVd~l~~~~~KTK~~~~~Lk~l~~--~k~~LiV~~ 254 (310)
||+|||||++|||+||+|+++||||+|++|+++|||+++.+++|+|||++.++.+|||+++++|++++. .+++|||++
T Consensus 80 sP~~~gGG~~fgP~pR~~~~klnkK~rrlAl~sALs~k~~~~~l~Vvd~~~~~~~KTK~~~~~L~~lg~~~~~~~LiV~~ 159 (210)
T 3v2d_F 80 APIFVGGGVVFGPKPRDYSYTLPKKVRKKGLAMAVADRAREGKLLLVEAFAGVNGKTKEFLAWAKEAGLDGSESVLLVTG 159 (210)
T ss_dssp STTSTTCCCSSCCCCCCCCCCCCHHHHHHHHHHHHHHHHHTTCEEEESCCTTCSSCHHHHHHHHHHTTCCSSSCEEEECS
T ss_pred CCcccCCeeeCCCCCccceeeCCHHHHHHHHHHHHHHHHhcCCEEEecccccCCccHHHHHHHHHHcCCCCCCceEEEeC
Confidence 999999999999999999999999999999999999999999999999999999999999999999987 478999983
Q ss_pred CCcchHHHHHHhcCCceeEEecCCCChhhhccCCcEEEeHHHHHHHHHHhc
Q 021591 255 GCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNKIVDRMH 305 (310)
Q Consensus 255 ~~~d~nl~~a~RNip~V~v~~~~~LNvydLL~~~~lViT~~Al~~Leerl~ 305 (310)
|+|+.+|+||||+|+++++++|||||||++++||||++||++||++|+
T Consensus 160 ---~~~~~~a~RNip~v~v~~~~~lnv~dll~~~~vv~t~~Al~~l~e~~~ 207 (210)
T 3v2d_F 160 ---NELVRRAARNLPWVVTLAPEGLNVYDIVRTERLVMDLDAWEVFQNRIG 207 (210)
T ss_dssp ---CHHHHHHHTTCTTEEEECGGGCCHHHHHHSSEEEEEHHHHHHHHHHHC
T ss_pred ---ChhHHHHHhCcCCceEEeeCCccHHHHhCCCCEEEEHHHHHHHHHHhc
Confidence 899999999999999999999999999999999999999999999996
No 3
>3r8s_E 50S ribosomal protein L4; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_C 1p86_C 1vs8_E 1vs6_E 2aw4_E 2awb_E 1vt2_E 2i2v_E 2j28_E 2i2t_E* 2qao_E* 2qba_E* 2qbc_E* 2qbe_E 2qbg_E 2qbi_E* 2qbk_E* 2qov_E 2qox_E 2qoz_E* ...
Probab=100.00 E-value=2.7e-73 Score=512.73 Aligned_cols=191 Identities=37% Similarity=0.600 Sum_probs=186.9
Q ss_pred eEEcCccccCCCCchhHHHHHHHHHHHHcccCCCCCceeeeecCCCcCccccCCCCccCCCCCCCCcccCcccccCCCcc
Q 021591 113 FMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPR 192 (310)
Q Consensus 113 ~i~Lp~~VF~~~~r~dllh~vV~~q~anrRqGta~tKtRaEV~GsGrKp~rQKGTGrAR~Gs~rsP~~rGGG~afGPkPR 192 (310)
+|+||++||+.|+|+||||++|+||++|+|||||+||||+||+|||||||||||||||||||+|||+|||||++|||+||
T Consensus 11 ~i~L~~~vF~~~~r~dlih~~v~~~~a~~Rqgt~~tktraEv~G~grKp~rQKGTGrAR~Gs~rsP~~~gGG~~fgP~pR 90 (201)
T 3r8s_E 11 ALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQ 90 (201)
T ss_dssp CEECCHHHHSSCCCHHHHHHHHHHHHTTSCCCCCCCCBTTTSSCCCCCSSCSSSSSSCCCCCTTCTTSTTCCBTTCCCCC
T ss_pred eEECCHHHhCCCCCHHHHHHHHHHHHHhCcCCCCCCcceeeecCCCCCCCccCCCCccccCcCcCCceeCCEeecCCccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHHHHHHHHHcCCeEEeccCCCCCCChHHHHHHHHhccCCCcEEEEeCCCcchHHHHHHhcCCcee
Q 021591 193 SHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVN 272 (310)
Q Consensus 193 ~y~~klNKK~rrlAlrsALSaK~~~g~LiVVd~l~~~~~KTK~~~~~Lk~l~~~k~~LiV~~~~~d~nl~~a~RNip~V~ 272 (310)
+|+++||||+|++|+++|||+++++++|+|||++.++.+|||+++++|+++++ +++|||+ ++.|+|+.+|+||||+|+
T Consensus 91 ~~~~klnkK~rrlAl~sALs~k~~~~~l~Vvd~~~~~~~KTK~~~~~L~~l~~-~~~LiV~-~~~~~~~~~a~RNip~v~ 168 (201)
T 3r8s_E 91 DHSQKVNKKMYRGALKSILSELVRQDRLIVVEKFSVEAPKTKLLAQKLKDMAL-EDVLIIT-GELDENLFLAARNLHKVD 168 (201)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHHTCEEECSCCCCSSSCHHHHHHHHHHHTC-SSEEEEE-SSCCHHHHHTTSSCSSEE
T ss_pred cceeccCHHHHHHHHHHHHHHHhhcCCEEEeccccccCcCHHHHHHHHHHcCC-CceEEEE-CCCchHHHHHHhCCCCce
Confidence 99999999999999999999999999999999999999999999999999987 6899999 467999999999999999
Q ss_pred EEecCCCChhhhccCCcEEEeHHHHHHHHHHhc
Q 021591 273 VLPSVGLNVYSILQHDTLVMSRDAVNKIVDRMH 305 (310)
Q Consensus 273 v~~~~~LNvydLL~~~~lViT~~Al~~Leerl~ 305 (310)
++++++|||||||++++||||++|+++|||+|.
T Consensus 169 v~~~~~lnv~dll~~~~~v~t~~Al~~lee~l~ 201 (201)
T 3r8s_E 169 VRDATGIDPVSLIAFDKVVMTADAVKQVEEMLA 201 (201)
T ss_dssp EEEGGGCCHHHHHHSSEEEECHHHHHHHHHHHC
T ss_pred EEeeCCCcHHHHhCCCCEEEEHHHHHHHHHHhC
Confidence 999999999999999999999999999999984
No 4
>3bbo_G Ribosomal protein L4; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=3.5e-73 Score=535.60 Aligned_cols=208 Identities=30% Similarity=0.466 Sum_probs=198.6
Q ss_pred cceeeEEEccCCCeeeeEEcCccccCCCCchhHHHHHHHHHHHHcccCCCCCceeeeecCCCcCccccCCCCccCCCCCC
Q 021591 97 QDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLR 176 (310)
Q Consensus 97 ~~~~v~V~n~~g~~~g~i~Lp~~VF~~~~r~dllh~vV~~q~anrRqGta~tKtRaEV~GsGrKp~rQKGTGrAR~Gs~r 176 (310)
+|++++|||++|+++|+|+||++||+.|+|+||||+||+||++|+|||||+||||+|||||||||||||||||||||++|
T Consensus 51 ~M~~v~V~~~~G~~~g~veLp~~VF~~~~r~dlih~vV~~q~an~RQGTa~tKtRaEV~GgGRKp~RQKGTGRAR~Gs~r 130 (293)
T 3bbo_G 51 ELIPLPILNFSGEKVGETFLNLKTAPPEKARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRKPYPQKKTGRARRGSQG 130 (293)
T ss_dssp CCEEEECCCSSSCCCSEEEECSSSSSSCCCTTTTTTHHHHHHHHHCCCCCCCCSSTTCSSSCCCCCCCSSSCSCSCCSSS
T ss_pred cCceeEEEcCCCCEeeeEEcCHHHhCCCccHHHHHHHHHHHHHhcccccccCceeeeeccCCCceeccCCCCccccCccc
Confidence 45589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCcccccCCCcccccccccHHHHHHHHHHHHHHHHHcCCeEEeccC--CCCCCChHHHHHHHHhccCC--CcEEEE
Q 021591 177 GPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL--EVPSHKTKFIVNYYNQMENT--KKVLLC 252 (310)
Q Consensus 177 sP~~rGGG~afGPkPR~y~~klNKK~rrlAlrsALSaK~~~g~LiVVd~l--~~~~~KTK~~~~~Lk~l~~~--k~~LiV 252 (310)
+|+|||||++|||+||+|+++||||+|++||++|||+|+ |+|+|||++ +++.+|||+++++|+++++. +++|||
T Consensus 131 sP~~rGGGvafGPkPRdy~~klNKK~rrlAlrsALSak~--g~LvVvd~~~~~~~~~KTK~~~~~Lk~lg~~~~~k~LlV 208 (293)
T 3bbo_G 131 SPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIASAV--GNSFVVEEFAENFEKPKTKDFIAAMQRWGLDPAEKSLFF 208 (293)
T ss_dssp CSSSSSSCCSSCCCSCCCCCCCCSHHHHHHHHHHHHHHH--HTTCCCCCCGGGTTCCSSHHHHTTHHHHSCSSCSSSCCE
T ss_pred CCceecCceecCCcCcchhhhcCHHHHHHHHHHHHHHHc--CCEEEEecccccccCCCHHHHHHHHHHcCCcccCceEEE
Confidence 999999999999999999999999999999999999999 889999999 89999999999999999863 567888
Q ss_pred eCCCcchHHHHHHhcCCceeEEecCCCChhhhccCCcEEEeHHHHHHHHHHhcCC
Q 021591 253 DGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNKIVDRMHTP 307 (310)
Q Consensus 253 ~~~~~d~nl~~a~RNip~V~v~~~~~LNvydLL~~~~lViT~~Al~~Leerl~~~ 307 (310)
++ +.|+|+.+|+||||+|+++++++|||||||++++||||++||++||++|.+-
T Consensus 209 ~~-~~d~nl~~A~RNIp~V~v~~v~~LNvydLl~~~~lViT~~Al~~Lee~l~~~ 262 (293)
T 3bbo_G 209 LM-DLVENVEKSGRNIRTLKLLTPRSLNLFDVLNAEKLVFTEGTIQYLNQRYGVD 262 (293)
T ss_dssp EC-CCSSSCCTTTSSSSSCEECCSSCCCHHHHHHSSCEECCTTHHHHHHHHSCC-
T ss_pred Ec-CCChhHHHHHhCCCCcEEEeeCceeHHHhhCCCcEEEEHHHHHHHHHHhccc
Confidence 74 5688999999999999999999999999999999999999999999999864
No 5
>2zjr_C 50S ribosomal protein L4; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.22.1.1 PDB: 1j5a_K* 1jzy_K* 1jzz_K* 1k01_K* 1nkw_C 1sm1_C* 2zjp_C* 2zjq_C 1jzx_K 3cf5_C* 3dll_C* 3pio_C* 3pip_C* 1nwy_C* 1nwx_C* 1xbp_C* 1pnu_C 1pny_C 1vor_F 1vou_F ...
Probab=100.00 E-value=1.9e-72 Score=508.61 Aligned_cols=199 Identities=39% Similarity=0.609 Sum_probs=189.5
Q ss_pred eeEEEccCCCeeeeEEcCccccCCCCchhHHHHHHHHHHHHcccCCCCCceeeeecCCCcCccccCCCCccCCCCCCCCc
Q 021591 100 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179 (310)
Q Consensus 100 ~v~V~n~~g~~~g~i~Lp~~VF~~~~r~dllh~vV~~q~anrRqGta~tKtRaEV~GsGrKp~rQKGTGrAR~Gs~rsP~ 179 (310)
+++|||++|+++|+++||+ +|+||||+||+||++|+|||||+||||+||||||||||||||||||||||+|||+
T Consensus 3 ~v~v~~~~g~~~g~i~L~~------~r~dlih~~v~~~~a~~Rqgt~~tktraEv~G~GrKp~rQKGTGrAR~Gs~rsP~ 76 (205)
T 2zjr_C 3 QINVIGQNGGRTIELPLPE------VNSGVLHEVVTWQLASRRRGTASTRTRAQVSKTGRKMYGQKGTGNARHGDRSVPT 76 (205)
T ss_dssp CCCCSSCCCCCCCCCCTTT------CCHHHHHHHHHHHHHHHCCCCCCCCCCTTTSCCCSCCSCSSSSSSCCCSCSCSTT
T ss_pred eeEEEcCCCCEeeeEECCC------chHHHHHHHHHHHHHhccccccccceeeeccCCCCCCCCcCCCCCcccCcccCCc
Confidence 6899999999999999996 9999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccccCCCcccccccccHHHHHHHHHHHHHHHHHcCCeEEeccCCCCCCChHHHHHHHHhccCC--CcEEEEeCCCc
Q 021591 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQMENT--KKVLLCDGGCI 257 (310)
Q Consensus 180 ~rGGG~afGPkPR~y~~klNKK~rrlAlrsALSaK~~~g~LiVVd~l~~~~~KTK~~~~~Lk~l~~~--k~~LiV~~~~~ 257 (310)
|||||++|||+||+|+++||||+|++|+++|||+++++++|+|||+++++.+|||+++++|++++.. +++|||+ .
T Consensus 77 ~~gGG~~fgP~pR~~~~klnkK~rrlAl~sALs~k~~~~~lvVvd~~~~~~~KTK~~~~~L~~l~~~~~~~~LiV~---~ 153 (205)
T 2zjr_C 77 FVGGGVAFGPKPRSYDYTLPRQVRQLGLAMAIASRQEGGKLVAVDGFDIADAKTKNFISWAKQNGLDGTEKVLLVT---D 153 (205)
T ss_dssp STTSCCTTCCCCCCCCCCCCHHHHHHHHHHHHHHHHHTTCCBCSCCTTSCSSCSHHHHHHHHHTTCCSSSCEEEEC---C
T ss_pred ccCCeeecCCCCcchhhhcCHHHHHHHHHHHHHHHhhcCCEEEEeccccCCCCHHHHHHHHHHcCCCcCCCEEEEE---c
Confidence 9999999999999999999999999999999999999999999999999999999999999999875 7899998 3
Q ss_pred chHHHHHHhcCCceeEEecCCCChhhhccCCcEEEeHHHHHHHHHHhcCC
Q 021591 258 HEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNKIVDRMHTP 307 (310)
Q Consensus 258 d~nl~~a~RNip~V~v~~~~~LNvydLL~~~~lViT~~Al~~Leerl~~~ 307 (310)
|+|+.+|+||||+|+++++++|||||||++++||||++||++||++|.+.
T Consensus 154 ~~~~~~a~RNip~v~v~~~~~lnv~dll~~~~~v~t~~Al~~lee~~~~~ 203 (205)
T 2zjr_C 154 DENTRRAARNVSWVSVLPVAGVNVYDILRHDRLVIDAAALEIVEEEAGEE 203 (205)
T ss_dssp CHHHHTSCCCSSSEEEEGGGCCCHHHHHHSSEEECBCTTTSSCCC-----
T ss_pred CccHHHHHhCCCCceEEeeCceeHHHHhCCCcEEEEHHHHHHHHHHHhhh
Confidence 89999999999999999999999999999999999999999999998753
No 6
>2ftc_D Mitochondrial ribosomal protein L4 isoform A, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_D
Probab=100.00 E-value=3.1e-66 Score=458.01 Aligned_cols=172 Identities=41% Similarity=0.663 Sum_probs=166.1
Q ss_pred HHHHHHHHHHcccCCCCCceeeeecCCCcCccccCCCCccCCCCCCCCcccCcccccCCC-cccccccccHHHHHHHHHH
Q 021591 131 HRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKI 209 (310)
Q Consensus 131 h~vV~~q~anrRqGta~tKtRaEV~GsGrKp~rQKGTGrAR~Gs~rsP~~rGGG~afGPk-PR~y~~klNKK~rrlAlrs 209 (310)
|++|+||++++|||||+||||+||+|||||||||||||||||||+|||+|||||++|||+ ||||+++||||+|++||++
T Consensus 1 h~~v~~~~a~~Rqgt~~tktraEv~G~grKp~rQKGTGrAR~Gs~rsP~~~gGG~~fgP~~pR~~~~klnkK~rrlAl~s 80 (175)
T 2ftc_D 1 HQVAMWQKNFKRISYAKTKTRAEVRGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKV 80 (175)
T ss_pred CHHHHHHHHHhhcCCCCCcceeeecCCCCCCCCcCCCCccccCCCcCCcccCCEeecCCCCccchhhhcCHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred HHHHHHHcCCeEEeccCCCCCCChHHHHHHHHhccCCCcEEEEeCCCc--chHHHHHHhcCCceeEEecCCCChhhhccC
Q 021591 210 ALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCI--HEKLKLATQNLHYVNVLPSVGLNVYSILQH 287 (310)
Q Consensus 210 ALSaK~~~g~LiVVd~l~~~~~KTK~~~~~Lk~l~~~k~~LiV~~~~~--d~nl~~a~RNip~V~v~~~~~LNvydLL~~ 287 (310)
|||+++.+++|+|||+++++.+|||+++++|+++++.+++|||+++.. |+|+.+|+||||+|+++++++|||||||++
T Consensus 81 ALs~k~~~~~lvVvd~~~~~~~KTK~~~~~l~~l~~~~~~LiV~~~~~~~~~~~~~a~RNip~v~v~~~~~lnv~dll~~ 160 (175)
T 2ftc_D 81 ALTVKLAQDDLHIMDSLELPTGDPQYLTELAHYRRWGDSVLLVDLTHEEMPQSIVEATSRLKTFNLIPAVGLNVHSMLKH 160 (175)
T ss_pred HHHHhccCCCEEEEecccCCCCCHHHHHHHHHHCCCCCceEEEECCCccCCHHHHHHHhCCCCcEEEeeCCEeHHHHhCC
Confidence 999999999999999999999999999999999998778999985313 899999999999999999999999999999
Q ss_pred CcEEEeHHHHHHHHH
Q 021591 288 DTLVMSRDAVNKIVD 302 (310)
Q Consensus 288 ~~lViT~~Al~~Lee 302 (310)
++||||++||++|||
T Consensus 161 ~~lv~t~~Al~~lee 175 (175)
T 2ftc_D 161 QTLVLTLPTVAFLED 175 (175)
T ss_pred CCEEEEHHHHHHHhC
Confidence 999999999999985
No 7
>3j21_D 50S ribosomal protein L4P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=2.6e-62 Score=454.57 Aligned_cols=199 Identities=27% Similarity=0.313 Sum_probs=187.7
Q ss_pred eeeEEEccCCCeeeeEEcCccccCCCCchhHHHHHHHHHHHHccc--CCCC---CceeeeecCCCcC---ccccCCC-Cc
Q 021591 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQ--GTHS---TKTISEVSGTGKK---PWRQKGT-GR 169 (310)
Q Consensus 99 ~~v~V~n~~g~~~g~i~Lp~~VF~~~~r~dllh~vV~~q~anrRq--Gta~---tKtRaEV~GsGrK---p~rQKGT-Gr 169 (310)
|+++|||++|+++|+|+|| +||+.|+|+||||+||+||++|+|| |||+ ||||+||||+||| ||||||| ||
T Consensus 1 m~v~V~~~~G~~~g~v~Lp-~vF~~~~r~dli~~~v~~~~an~Rq~~Gt~~~ag~ktraev~G~Gr~~ar~~RqKGtgGr 79 (255)
T 3j21_D 1 MKVKVFDLNGQPVGEIELP-KVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHSMARVERLKTPPRY 79 (255)
T ss_dssp CEEEEECTTSCEEEEEECC-GGGGSCCCHHHHHHHHHHHHHHTCCCCCCCSSTTSSSCCBCCCSSSSSCCCCBCSSSCCC
T ss_pred CeeEEEcCCCCEeeEEEhH-HhhCCCCcHHHHHHHHHHHHHhccccccCCcccCcccceeecCCCCCcCcCCccCCCCCc
Confidence 7899999999999999999 8999999999999999999999999 8988 8999999999996 9999999 99
Q ss_pred cCCCCCCCCcccCcccccCCCc-ccccccccHHHHHHHHHHHHHHHHHcC---------------CeEEeccCCCCCCCh
Q 021591 170 ARHGTLRGPQFRGGTTMHGPKP-RSHAIKLNKKVRRLGLKIALSARAAEG---------------KLLVFEDLEVPSHKT 233 (310)
Q Consensus 170 AR~Gs~rsP~~rGGG~afGPkP-R~y~~klNKK~rrlAlrsALSaK~~~g---------------~LiVVd~l~~~~~KT 233 (310)
|| ++|+|||||++|||+| |+|+++||||+|++|++||||+++.++ .|+|+|+++ +.+||
T Consensus 80 Ar----rsP~~rGGg~~~gPkp~R~~~~klNkK~rrlAl~sALsa~~~~~lv~~rgh~~~~~~~~~lvVvd~~~-~~~KT 154 (255)
T 3j21_D 80 AA----FVPFARGGRRTHPPKVEKIIWEDINKKEKRLALMSAIAATANYDLVRARGHIIDNVPQLPLIVVDDLQ-KVQKT 154 (255)
T ss_dssp CS----SCSSSTTCCCSSCCCTTSCCCCCCCHHHHHHHHHHHHHHTTCHHHHHHHTCCCSCTTCSSEEECGGGG-TCCCH
T ss_pred cc----cCccccCCeeecCCCCCcccceecCHHHHHHHHHHHHHHHhhcccchhcccccccccceeEEEEeCCc-CCCCh
Confidence 99 9999999999999999 899999999999999999999999977 799999997 57899
Q ss_pred HHHHHHHHhccCC---------------------------CcEEEEeCCCcchHHHHHHhcCCceeEEecCCCChhhhcc
Q 021591 234 KFIVNYYNQMENT---------------------------KKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQ 286 (310)
Q Consensus 234 K~~~~~Lk~l~~~---------------------------k~~LiV~~~~~d~nl~~a~RNip~V~v~~~~~LNvydLL~ 286 (310)
|+++++|++++.. +++|||++ +.|+ +.+|+||||+|+++++++||+||||+
T Consensus 155 K~~~~~L~~lg~~~dv~r~~~~~~~ragkgk~r~rr~~~~~~~LiV~~-~~~~-~~~a~RNip~V~v~~~~~LNv~~Ll~ 232 (255)
T 3j21_D 155 RETREIFKKLGIWDDIVRAKEKSGVRAGKGKMRGRRYKKAKGPLIVVG-KNEG-IVLGARNHPGVDVVVVDNLGVEHLAP 232 (255)
T ss_dssp HHHHHHHHHHTCTHHHHHHTSCCCSCSSGGGGGSCCSCCCCCCEEEES-SSSS-SCSSSSSSTTCEEEETTTCCHHHHST
T ss_pred HHHHHHHHHcCChhhhHHhhccceecccccccccccccCCCceEEEEC-CCcH-HHHHHhCCCCcEEEecCCccHHHHhC
Confidence 9999999999863 68999995 4455 99999999999999999999999999
Q ss_pred CC----cEEEeHHHHHHHHHHhc
Q 021591 287 HD----TLVMSRDAVNKIVDRMH 305 (310)
Q Consensus 287 ~~----~lViT~~Al~~Leerl~ 305 (310)
++ .||||++||++||++|+
T Consensus 233 ~~~~gr~~V~T~~A~~~lee~~g 255 (255)
T 3j21_D 233 GTHPGRLTVWTVSAIERLRELYG 255 (255)
T ss_dssp TSCCCCCEEEEHHHHHHHHSCCC
T ss_pred CCCCCceEEEEHHHHHHHHHHhC
Confidence 98 79999999999999874
No 8
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=2.8e-60 Score=463.38 Aligned_cols=204 Identities=24% Similarity=0.254 Sum_probs=189.6
Q ss_pred cceeeEEEccCCCeee-eEEcCccccCCCCchhHHHHHHHHHHHHcccCCCCC-----ceeeeecCCCcCccc-----cC
Q 021591 97 QDLVIPVTNFFNEDKG-FMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHST-----KTISEVSGTGKKPWR-----QK 165 (310)
Q Consensus 97 ~~~~v~V~n~~g~~~g-~i~Lp~~VF~~~~r~dllh~vV~~q~anrRqGta~t-----KtRaEV~GsGrKp~r-----QK 165 (310)
..|+++|||++|+.+| +|+|| +||+.|+|+||||+||+||++|+||||+++ |||+||||||||||| ||
T Consensus 4 ~rm~v~V~~~~G~~~g~~ieLp-~VF~~piR~dlIh~vV~~~~an~RQgta~t~~AG~KTraEv~G~GRKp~RiPRv~QK 82 (421)
T 2zkr_c 4 ARPLISVYSEKGESSGKNVTLP-AVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGG 82 (421)
T ss_dssp ---CCEEECTTSSEEEECSSCC-GGGGSCCCHHHHHHHHHHHHHTTCCCCCCCSCTTTCSCCCCCCSSSSSCCSCCBTTT
T ss_pred cCceeEEEcCCCCccccEEehh-HhhCCCccHHHHHHHHHHHHHhccCCCCcCcccCCcceeEecCCCCCcCCcccccCC
Confidence 3578999999999977 89999 999999999999999999999999999999 999999999999999 99
Q ss_pred CCCccCCCCCCCCcccCcccccCCC-c-ccccccccHHHHHHHHHHHHHHH---------------HHcCCeEEeccCCC
Q 021591 166 GTGRARHGTLRGPQFRGGTTMHGPK-P-RSHAIKLNKKVRRLGLKIALSAR---------------AAEGKLLVFEDLEV 228 (310)
Q Consensus 166 GTGrAR~Gs~rsP~~rGGG~afGPk-P-R~y~~klNKK~rrlAlrsALSaK---------------~~~g~LiVVd~l~~ 228 (310)
||||||||++++ +|| ||++|||+ | |+|+++||+|+|++|+++|||++ +.++.|+|+|+++
T Consensus 83 GTGRARqGs~rs-~~R-GGr~fgP~kp~R~~~~KlNkK~rrlAlrSALSaka~~~LV~aRGH~i~~~~e~~LVVvD~le- 159 (421)
T 2zkr_c 83 GTHRSGQGAFGN-MCR-GGRMFAPTKTWRRWHRRVNTTQKRYAICSALACLSLPALVMSKGHRIEEVPELPLVVEDKVE- 159 (421)
T ss_dssp TBCCCSTTCCTT-STT-CCCCSSCCCSSSCCCCCCCHHHHHHHHHHHHHHHTCHHHHHHTTCCCCSCSCCSEEECGGGG-
T ss_pred CCCccCcccccc-ccc-cceeeCCCCCCcchhhhcCHHHHHHHHHHHHHhcccchhhhhccccccccccCCEEEEeCCc-
Confidence 999999999999 999 99999999 8 99999999999999999999999 7789999999998
Q ss_pred CCCChHHHHHHHHhccCCC---------------------------cEEEEeCCCcchHHHHHHhcCCceeEEecCCCCh
Q 021591 229 PSHKTKFIVNYYNQMENTK---------------------------KVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNV 281 (310)
Q Consensus 229 ~~~KTK~~~~~Lk~l~~~k---------------------------~~LiV~~~~~d~nl~~a~RNip~V~v~~~~~LNv 281 (310)
+.+|||+++++|++++... ++|||++ + |+++.+|+||||+|+++++++|||
T Consensus 160 ~~~KTK~~v~~Lk~lgl~~d~~r~~~sk~iRaGkGKmRgRry~~~kg~LiV~~-~-d~~l~~A~RNIpgV~v~~v~~LNv 237 (421)
T 2zkr_c 160 GYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYN-E-DNGIIKAFRKHPGITLLNVSKLNI 237 (421)
T ss_dssp GCCCHHHHHHHHHHTTCTHHHHHTTSSCEECSSSTTTTTCCEECCCCCEEEES-S-SSCCCHHHHTSTTCEEEEGGGCCH
T ss_pred cccChHHHHHHHHhcCCCcchhhhhhheecccccccccccccccCcceEEEEC-C-ChhHHHHHhCCCCcEEEeeCCccH
Confidence 8999999999999997532 3899984 4 888999999999999999999999
Q ss_pred hhhccCC----cEEEeHHHHHHHHHHhcC
Q 021591 282 YSILQHD----TLVMSRDAVNKIVDRMHT 306 (310)
Q Consensus 282 ydLL~~~----~lViT~~Al~~Leerl~~ 306 (310)
||||+++ .||||++||++||++|++
T Consensus 238 ~dLl~~~h~GR~vV~T~sAle~Lee~~~t 266 (421)
T 2zkr_c 238 LKLAPGGHVGRFCIWTESAFRKLDDLYGT 266 (421)
T ss_dssp HHHSGGGCCCCCEEEEHHHHHHHTTC---
T ss_pred HHHhcCCCCCcEEEEEhHHHHHHHHHHhc
Confidence 9999999 999999999999999875
No 9
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_C 4a1c_C 4a1e_C
Probab=100.00 E-value=3e-59 Score=454.92 Aligned_cols=206 Identities=26% Similarity=0.293 Sum_probs=191.3
Q ss_pred cceeeEEE-ccCCCee-ee-EEcCccccCCCCchhHHHHHHHHHHHHccc---------CCCCCceeeeecCCCcCccc-
Q 021591 97 QDLVIPVT-NFFNEDK-GF-MVLAGDVFDVPIRKDIIHRVVRWQLAKRQQ---------GTHSTKTISEVSGTGKKPWR- 163 (310)
Q Consensus 97 ~~~~v~V~-n~~g~~~-g~-i~Lp~~VF~~~~r~dllh~vV~~q~anrRq---------Gta~tKtRaEV~GsGrKp~r- 163 (310)
++++++|| |.+|+.+ |+ |+|| +||+.|+|+||||+||+||++|+|| |||.||||+|||||||||||
T Consensus 3 ~~p~v~V~~~~~G~~~~g~~veLp-~VF~~~ir~dlIh~vV~~~~anrRQ~~~~~~~~rGTa~tktraEv~GtGRk~~Ri 81 (410)
T 4a17_C 3 SRPQIHVHDAKEANKQTATKLTLP-AVFTAPIRTDIVHKVFTDLNKNRKQASGVKISTRGTAGMGHSAESWGTGRAVARI 81 (410)
T ss_dssp CCCEEEEEESSSTTEEEEEEEECC-GGGGSCCCHHHHHHHHHHHHHTTCCCCCCCBCSSCBTTCCSCEEECCGGGSSCSS
T ss_pred CCCeeEEEECCCCCccCCceEehh-HhhCCCCcHHHHHHHHHHHHHhCcCcccCCCcccccccCCccceeCCCCCCcccc
Confidence 46799999 8999995 78 9996 7999999999999999999999999 88999999999999999999
Q ss_pred ----cCCCCccCCCCCCCCcccCcccccCCCc--ccccccccHHHHHHHHHHHHHHHHH---------------cCCeEE
Q 021591 164 ----QKGTGRARHGTLRGPQFRGGTTMHGPKP--RSHAIKLNKKVRRLGLKIALSARAA---------------EGKLLV 222 (310)
Q Consensus 164 ----QKGTGrAR~Gs~rsP~~rGGG~afGPkP--R~y~~klNKK~rrlAlrsALSaK~~---------------~g~LiV 222 (310)
||||||||||+++ |+|+ ||++|||+| |+|+++||+|+|++|+++|||+++. ++.|+|
T Consensus 82 PR~~QKGTGRARqGs~r-P~~r-GGr~fgP~p~~R~y~~KlNKK~rrlAlrSALSaka~~~lV~aRgh~i~~v~e~~LVV 159 (410)
T 4a17_C 82 PRVGGSGTHRSGQAAFG-NQCR-KGRMFAPLKTYRRVHRRVNVNQKRHAVAAALAASALVPLVFARGHRISNVQELPYVF 159 (410)
T ss_dssp EEECCSSSTTTTCBCSS-TTSS-SCCCSSCCCSCCCCCCCCCHHHHHHHHHHHHHHHTCHHHHHHTTCCCTTCCSSSEEE
T ss_pred ccccCCCCCcccccccC-CccC-CeEEcCCCCCccchhhhhCHHHHHHHHHHHHHHhcchhhhhhccccccccCcCCEEE
Confidence 9999999999999 9888 899999997 9999999999999999999999974 567888
Q ss_pred eccCCCCCCChHHHHHHHHhccCC---------------------------CcEEEEeCCCcchHHHHHHhcCCceeEEe
Q 021591 223 FEDLEVPSHKTKFIVNYYNQMENT---------------------------KKVLLCDGGCIHEKLKLATQNLHYVNVLP 275 (310)
Q Consensus 223 Vd~l~~~~~KTK~~~~~Lk~l~~~---------------------------k~~LiV~~~~~d~nl~~a~RNip~V~v~~ 275 (310)
+|+++ ..+|||+++++|++++.. +++|||++ +.|+++.+|+||||+|++++
T Consensus 160 ~D~~e-~~~KTK~~v~~Lk~lg~~~dv~r~~~~k~iRaGkGKmRgRry~~~k~~LIV~~-~~d~~l~~A~RNIpgV~v~~ 237 (410)
T 4a17_C 160 DDSVE-SYEKTKQAVAFLKRVGAYDDVLRVAETKALRAGQGKLRNRRYKLRRGPLVVYG-NEKSTLTRALRNIPGVDVCN 237 (410)
T ss_dssp CTTGG-GCCSHHHHHHHHHHHTTHHHHHHHHHCEEECCGGGGGGTCCEEECCCCEEEEC-CTTCSHHHHHTTSTTCEEEE
T ss_pred EecCc-CCCCHHHHHHHHHHcCCcchhhhhhcccceeccccccccccccCCCceEEEEC-CCchHHHHHHhCCCCcEEEE
Confidence 88887 468999999999998753 36999994 56899999999999999999
Q ss_pred cCCCChhhhccCC----cEEEeHHHHHHHHHHhcCC
Q 021591 276 SVGLNVYSILQHD----TLVMSRDAVNKIVDRMHTP 307 (310)
Q Consensus 276 ~~~LNvydLL~~~----~lViT~~Al~~Leerl~~~ 307 (310)
+++||+|||++++ .||||++||+.||++|++.
T Consensus 238 v~~LNv~dLl~~~~~gR~vV~TksAl~~Lee~~~~~ 273 (410)
T 4a17_C 238 VNRLNLLQLAPGGHVGRFIIWTESAFKKLNEIFGTY 273 (410)
T ss_dssp TTSCCHHHHSGGGCCCCCEEECHHHHHHHHHHHCBT
T ss_pred eCCccHHHHhCCCCCCceEEEEHHHHHHHHHHHccc
Confidence 9999999999999 8899999999999999864
No 10
>1vq8_C 50S ribosomal protein L4E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.22.1.1 PDB: 1k73_E* 1k8a_E* 1k9m_E* 1kc8_E* 1kd1_E* 1kqs_C* 1m1k_E* 1m90_E* 1n8r_E* 1nji_E* 1q7y_E* 1q81_E* 1q82_E* 1q86_E* 1qvf_C 1qvg_C 1s72_C* 1vq4_C* 1vq5_C* 1vq6_C* ...
Probab=100.00 E-value=1.8e-59 Score=433.71 Aligned_cols=193 Identities=28% Similarity=0.417 Sum_probs=182.8
Q ss_pred eeeEEEccCCCeeeeEEcCccccCCCCchhHHHHHHHHHHHHcccCCCC-----CceeeeecCCCcCc---cccCCCCcc
Q 021591 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHS-----TKTISEVSGTGKKP---WRQKGTGRA 170 (310)
Q Consensus 99 ~~v~V~n~~g~~~g~i~Lp~~VF~~~~r~dllh~vV~~q~anrRqGta~-----tKtRaEV~GsGrKp---~rQKGTGrA 170 (310)
|+++|||++|+++|+|+|| +||+.|+|+||||+||+||++|+|||||. +||++|+||+|||| |||| |+|
T Consensus 1 m~v~v~~~~g~~~g~v~Lp-~vF~~~~r~dli~~~v~~~~an~Rqgt~~~~~aG~kt~ae~~GtGR~~ari~rqK--G~a 77 (246)
T 1vq8_C 1 MQATIYDLDGNTDGEVDLP-DVFETPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPAESFGSGRGQAHVPKLD--GRA 77 (246)
T ss_dssp CEEEEECTTSCEEEEEECC-GGGGSCCCHHHHHHHHHHHHHHTCCCCCCCTTTTTCCCCBCCCSSSSCCCCCEET--TEE
T ss_pred CeeEEEcCCCCCccEEEhh-HhhCCCccHHHHHHHHHHHHHhcccCcccccccCcccceeeccCCCCcccccccc--Ccc
Confidence 5799999999999999999 99999999999999999999999999999 99999999999999 9999 777
Q ss_pred CCCCCCCCcccCcccccCCCc-ccccccccHHHHHHHHHHHHHHHHH--------------cCCeEEeccCCCCCCChHH
Q 021591 171 RHGTLRGPQFRGGTTMHGPKP-RSHAIKLNKKVRRLGLKIALSARAA--------------EGKLLVFEDLEVPSHKTKF 235 (310)
Q Consensus 171 R~Gs~rsP~~rGGG~afGPkP-R~y~~klNKK~rrlAlrsALSaK~~--------------~g~LiVVd~l~~~~~KTK~ 235 (310)
| ++|+|||||++|||+| |+|+++||||+|++|+++|||+++. ++.|+|+|+++ +.+|||+
T Consensus 78 r----rsP~~rGGg~~~gPkp~R~~~~klnkK~rrlAl~sALsa~~~~~lv~~rGh~~~~~e~~lvVvd~~~-~~~KTK~ 152 (246)
T 1vq8_C 78 R----RVPQAVKGRSAHPPKTEKDRSLDLNDKERQLAVRSALAATADADLVADRGHEFDRDEVPVVVSDDFE-DLVKTQE 152 (246)
T ss_dssp C----SSTTSTTCCCSSCCCTTCCCCCCCCHHHHHHHHHHHHHHTTCHHHHHHHTCCCCCSSCSEEECGGGG-GCCCHHH
T ss_pred c----cCCccCCCeeecCCCCCccchhhcCHHHHHHHHHHHHHHhhhhhhhhhcccccccccccEEEEeCcc-cCCCHHH
Confidence 6 8999999999999998 9999999999999999999999997 68999999998 8999999
Q ss_pred HHHHHHhccCC--------------------------CcEEEEeCCCcchHHHHHHhcCCceeEEecCCCChhhhccCCc
Q 021591 236 IVNYYNQMENT--------------------------KKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDT 289 (310)
Q Consensus 236 ~~~~Lk~l~~~--------------------------k~~LiV~~~~~d~nl~~a~RNip~V~v~~~~~LNvydLL~~~~ 289 (310)
++++|++++.. +++|||++ + + +.+|+||||+|+++++++|||||||+++.
T Consensus 153 ~~~~L~~lg~~~dv~r~~~~~iragkgk~r~rr~~~~~~~LiV~~-~-~--~~~a~RNip~V~v~~~~~lnv~dll~~~~ 228 (246)
T 1vq8_C 153 VVSLLEALDVHADIDRADETKIKAGQGSARGRKYRRPASILFVTS-D-E--PSTAARNLAGADVATASEVNTEDLAPGGA 228 (246)
T ss_dssp HHHHHHHTTCTHHHHHSSCCEECSSGGGGGTCCEECCCCCEEEES-S-S--CCTTTTTSTTCEEEETTTCCHHHHSGGGC
T ss_pred HHHHHHhcCCcchhhhhhhhhcccccccccccccccCCcEEEEEC-c-H--HHHHHcCCCCcEEEeeCCeeHHHHhccCC
Confidence 99999999864 47999984 2 3 89999999999999999999999999976
Q ss_pred ----EEEeHHHHHHHHHH
Q 021591 290 ----LVMSRDAVNKIVDR 303 (310)
Q Consensus 290 ----lViT~~Al~~Leer 303 (310)
||||++||++|||+
T Consensus 229 ~gr~~v~T~~Al~~l~e~ 246 (246)
T 1vq8_C 229 PGRLTVFTESALAEVAER 246 (246)
T ss_dssp CCCCEEEEHHHHHHGGGC
T ss_pred CCCeEEEEHHHHHHHhhC
Confidence 99999999999873
No 11
>3iz5_D 60S ribosomal protein L4 (L4P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_D
Probab=100.00 E-value=7.2e-58 Score=445.88 Aligned_cols=206 Identities=25% Similarity=0.318 Sum_probs=184.3
Q ss_pred cceeeEEEccCCCeee----eEEcCccccCCCCchhHHHHHHHHHHHHcccCCCCCc-----eeeeecCCCcCcc---cc
Q 021591 97 QDLVIPVTNFFNEDKG----FMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTK-----TISEVSGTGKKPW---RQ 164 (310)
Q Consensus 97 ~~~~v~V~n~~g~~~g----~i~Lp~~VF~~~~r~dllh~vV~~q~anrRqGta~tK-----tRaEV~GsGrKp~---rQ 164 (310)
...+++|||++|+.+| +|+|| +||+.|+|+||||+||+||++|+|||||++| ||+|||||||||| ||
T Consensus 5 ~rp~v~V~~~~G~~~g~~~~~v~Lp-~VF~~~~r~dlIh~vV~~~~an~RQgt~~tk~AG~~traEv~GtGRk~~RipRQ 83 (405)
T 3iz5_D 5 TRPLVSVKALEGDMATDNSSSLALA-EVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQTSAESWGTGRAVSRIPRV 83 (405)
T ss_dssp CCCEECCBCCSCCCCSSCCCCEECC-GGGGSCCCHHHHHHHHHHHHHTCSCCCCSCTTTTTCSCCCCCCSSSSSCSSCCC
T ss_pred cCceEEEEeCCCCcccccceeeccH-HHhCCCCCHHHHHHHHHHHHHhhhcCcCCCccccCCccceecCCCCCccccccc
Confidence 3468999999999999 79996 9999999999999999999999999999999 9999999999999 99
Q ss_pred C--CCCccCCCCCCCCcccCcccccCCCc--ccccccccHHHHHHHHHHHHHHHHH---------------cCCeEEecc
Q 021591 165 K--GTGRARHGTLRGPQFRGGTTMHGPKP--RSHAIKLNKKVRRLGLKIALSARAA---------------EGKLLVFED 225 (310)
Q Consensus 165 K--GTGrAR~Gs~rsP~~rGGG~afGPkP--R~y~~klNKK~rrlAlrsALSaK~~---------------~g~LiVVd~ 225 (310)
| ||||||+|++ |+|+|||++|||+| |+|+++||||+|++|+++|||+++. ++.|+|+|+
T Consensus 84 KG~GTgRAr~gs~--~~~~gGGr~fgP~p~~R~y~~klNKK~rrlAlrSALSaka~~~lV~aRghri~~v~e~~LVV~D~ 161 (405)
T 3iz5_D 84 PGGGTHRAGQGAF--GNMCRGGRMFAPTKTWRKWHRRVNVHLRRVAVASALAATSVPSLVLARGHRIETVPELPLVISDS 161 (405)
T ss_dssp CCCSSSCCCSCCS--SSSSTTCCCSSSCCSCCCCCCCCCHHHHHHHHHHHHHHTTCHHHHHHHTCCCCCCSSSSEEECTT
T ss_pred cCCCCCccCCCCC--CCccCCeEEcCCCCCCccceeecCHHHHHHHHHHHHHHhcchhhhhhccccccccccCCEEEEec
Confidence 9 5566666654 89999999999998 9999999999999999999999964 455676666
Q ss_pred CCCCCCChHHHHHHHHhccCC---------------------------CcEEEEeCCCcchHHHHHHhcCCceeEEecCC
Q 021591 226 LEVPSHKTKFIVNYYNQMENT---------------------------KKVLLCDGGCIHEKLKLATQNLHYVNVLPSVG 278 (310)
Q Consensus 226 l~~~~~KTK~~~~~Lk~l~~~---------------------------k~~LiV~~~~~d~nl~~a~RNip~V~v~~~~~ 278 (310)
++ +.+|||+++++|++++.. +++|||++ +.|+++.+|+||||+|+++++++
T Consensus 162 ~~-~~~KTK~~v~~Lk~lg~~~d~~k~~~~~~iRaGkGKmRgRry~~~k~~LIV~~-~~d~~l~~A~RNIpgV~v~~v~~ 239 (405)
T 3iz5_D 162 AE-SIEKTSQAIKILKQVGAYADAEKAKDSVGIRPGKGKMRNRRYINRKGPLIVYG-TEGSKIVKAFRNLPGVDVANVER 239 (405)
T ss_dssp SS-SCCCHHHHHHHHHHHTCHHHHHTTSSCCEECCSGGGGTTCSEECCCCCEEEEC-CTTTCCCHHHHTSTTCEEEEGGG
T ss_pred Cc-ccCChHHHHHHHHHcCCccccchhhccccccccccccccccccccCceEEEEC-CCchHHHHHHhCCCCcEEEecCC
Confidence 65 789999999999998753 36899994 57899999999999999999999
Q ss_pred CChhhhccCCc----EEEeHHHHHHHHHHhcCC
Q 021591 279 LNVYSILQHDT----LVMSRDAVNKIVDRMHTP 307 (310)
Q Consensus 279 LNvydLL~~~~----lViT~~Al~~Leerl~~~ 307 (310)
||+||||+++. ||||++||++||++|++.
T Consensus 240 LNv~dLl~~~~~gr~vV~T~sAl~~Lee~~~~~ 272 (405)
T 3iz5_D 240 LNLLDLAPGGHLGRFVIWTESAFKKLEEVYGTF 272 (405)
T ss_dssp CCHHHHSGGGCCCCCEEEEHHHHTTSTTCC---
T ss_pred ccHHHHhcCCCCCceEEEEHHHHHHHHHHHccc
Confidence 99999999996 999999999999998753
No 12
>2wwb_H 60S ribosomal protein L4-B; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Triticum aestivum} PDB: 2wwa_H 2ww9_H 3izc_D 3izs_D 3o58_D 3o5h_D 3u5e_C 3u5i_C 1s1i_D 3jyw_D
Probab=100.00 E-value=4.4e-57 Score=435.49 Aligned_cols=200 Identities=25% Similarity=0.306 Sum_probs=190.4
Q ss_pred ceeeEEEccCCCeeee-EEcCccccCCCCchhHHHHHHHHHHHHcccCCCCCceeeeecCCCcCccccCCCCccCC----
Q 021591 98 DLVIPVTNFFNEDKGF-MVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARH---- 172 (310)
Q Consensus 98 ~~~v~V~n~~g~~~g~-i~Lp~~VF~~~~r~dllh~vV~~q~anrRqGta~tKtRaEV~GsGrKp~rQKGTGrAR~---- 172 (310)
.++++|||++|+.+|+ |+|| +||+.|+|+||||+||+||++|+||||+++|+|+|| +|+||| ||||||+
T Consensus 3 r~~v~V~~~~G~~~g~~i~Lp-~VF~~p~r~dlih~vv~~~~an~RQgt~~tk~rgev--tg~K~w---GTGRAraripR 76 (362)
T 2wwb_H 3 RPQVTVHSLTGEATANALPLP-AVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQ--TSAESW---GTGRAVARIPR 76 (362)
T ss_dssp SSCCCCCCSSCSCCSCCCCCC-GGGCSCCCHHHHHHHHHHHHHHHCCCCCCCSSSSCS--SCCSSC---CCCSSSCSCSC
T ss_pred CCeeEEEcCCCcCcCceEehh-HhhCCCccHHHHHHHHHHHHHhccCCCCCCCccccc--ccceec---CCCCCeeeccc
Confidence 4679999999999999 9999 999999999999999999999999999999999999 899999 9999999
Q ss_pred ----CCCCCCc-----ccCcccccCCCc--ccccccccHHHHHHHHHHHHHHH---------------HHcCCeEEeccC
Q 021591 173 ----GTLRGPQ-----FRGGTTMHGPKP--RSHAIKLNKKVRRLGLKIALSAR---------------AAEGKLLVFEDL 226 (310)
Q Consensus 173 ----Gs~rsP~-----~rGGG~afGPkP--R~y~~klNKK~rrlAlrsALSaK---------------~~~g~LiVVd~l 226 (310)
|+.|||+ |+|||++|||+| |+|+++||+|+|++|+++|||++ +.++.|+|+|++
T Consensus 77 v~g~Gs~RSp~ga~~~~~gGG~~fgP~p~~R~~~~klNkK~rrlAl~SALsaka~~~lv~arGH~i~~~~e~~LvVvd~~ 156 (362)
T 2wwb_H 77 VGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYATASAIAATAVASLVLARGHRVEKIPEIPLVVSTDL 156 (362)
T ss_dssp CCSCSSSSCSSTTTSSSCSSSCCSSSSCSSCCCCCCCCHHHHHHHHHHHHHGGGCSTHHHHHTCCCCSCSSCSBCCCGGG
T ss_pred ccCCCCCCCcccccCCccCCeEECCCCCCCcchhhhcCHHHHHHHHHHHHHhccchhhhhhccccccccccCcEEEEecc
Confidence 9999999 999999999998 99999999999999999999999 889999999999
Q ss_pred CCCCCChHHHHHHHHhccCC-C--------------------------cEEEEeCCCcchHHHHHHhcCCceeEEecCCC
Q 021591 227 EVPSHKTKFIVNYYNQMENT-K--------------------------KVLLCDGGCIHEKLKLATQNLHYVNVLPSVGL 279 (310)
Q Consensus 227 ~~~~~KTK~~~~~Lk~l~~~-k--------------------------~~LiV~~~~~d~nl~~a~RNip~V~v~~~~~L 279 (310)
++.+|||+++++|++++.. + ++|||++ + |+++.+|+||||+|+++++++|
T Consensus 157 -~~~~KTK~~~~~Lk~lg~~~d~~r~~~~~~iRaGkGKmRgRry~~~k~~LiV~~-~-d~~l~~A~RNipgV~v~~v~~L 233 (362)
T 2wwb_H 157 -ESIQKTKEAVAALKAVGAHSDLLKVLKSKKLRAGKGKYRNRRWTQRRGPLVVYA-E-DNGIVKALRNVPGVETANVASL 233 (362)
T ss_dssp -GTCCCHHHHHHHHHHHSCSHHHHHHTSTTSCCCCGGGTTSCCSCCCCCCEEEES-S-SCCCCTTTSCSSSCEEEESSSC
T ss_pred -cccCCHHHHHHHHHhcCCCcchhhhhhhhhcccccccccccccccCCceEEEEc-C-ChhHHHHHhcCCCCcEEeeCCc
Confidence 8999999999999999753 1 5899984 4 8889999999999999999999
Q ss_pred ChhhhccCC----cEEEeHHHHHHHHHHhcC
Q 021591 280 NVYSILQHD----TLVMSRDAVNKIVDRMHT 306 (310)
Q Consensus 280 NvydLL~~~----~lViT~~Al~~Leerl~~ 306 (310)
|||||++++ .||||++||++||++|++
T Consensus 234 Nv~dLl~~~~~gr~vV~T~sAl~~Le~~~~~ 264 (362)
T 2wwb_H 234 NLLQLAPGAHLGRFVIWTEAAFTKLDQVWGS 264 (362)
T ss_dssp CHHHHSTTSCCCCCEECCTTHHHHHHCCSSC
T ss_pred cHHHHhcccCcCCEEEEEHHHHHHHHHHHcc
Confidence 999999977 999999999999999876
No 13
>1vq8_C 50S ribosomal protein L4E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.22.1.1 PDB: 1k73_E* 1k8a_E* 1k9m_E* 1kc8_E* 1kd1_E* 1kqs_C* 1m1k_E* 1m90_E* 1n8r_E* 1nji_E* 1q7y_E* 1q81_E* 1q82_E* 1q86_E* 1qvf_C 1qvg_C 1s72_C* 1vq4_C* 1vq5_C* 1vq6_C* ...
Probab=46.71 E-value=13 Score=34.06 Aligned_cols=46 Identities=20% Similarity=0.349 Sum_probs=29.7
Q ss_pred HcccCCCCCceeeeecCC--CcCccccCCCCccCCCCCCCCcccCcccccCCCcc
Q 021591 140 KRQQGTHSTKTISEVSGT--GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPR 192 (310)
Q Consensus 140 nrRqGta~tKtRaEV~Gs--GrKp~rQKGTGrAR~Gs~rsP~~rGGG~afGPkPR 192 (310)
+.+.....-..++|++|+ +.++| ||||++. |.|=-.|-| +++|.-|
T Consensus 37 ~~~an~Rqgt~~~~~aG~kt~ae~~---GtGR~~a---ri~rqKG~a-rrsP~~r 84 (246)
T 1vq8_C 37 AAQANRKQDYGSDEYAGLRTPAESF---GSGRGQA---HVPKLDGRA-RRVPQAV 84 (246)
T ss_dssp HHHHHTCCCCCCCTTTTTCCCCBCC---CSSSSCC---CCCEETTEE-CSSTTST
T ss_pred HHHHhcccCcccccccCcccceeec---cCCCCcc---ccccccCcc-ccCCccC
Confidence 333344445558999998 99999 9999883 222222444 6888754
No 14
>2wwb_H 60S ribosomal protein L4-B; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Triticum aestivum} PDB: 2wwa_H 2ww9_H 3izc_D 3izs_D 3o58_D 3o5h_D 3u5e_C 3u5i_C 1s1i_D 3jyw_D
Probab=38.55 E-value=13 Score=35.90 Aligned_cols=49 Identities=22% Similarity=0.184 Sum_probs=35.1
Q ss_pred chhHHHHHHHHHHHHcccCCCCCceeeeecCCCcCcc-----ccCCCCccCCCC
Q 021591 126 RKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW-----RQKGTGRARHGT 174 (310)
Q Consensus 126 r~dllh~vV~~q~anrRqGta~tKtRaEV~GsGrKp~-----rQKGTGrAR~Gs 174 (310)
+..++++.-...+-....-++...+.++.||+||... +|+||.|+.+|.
T Consensus 36 h~vv~~~~an~RQgt~~tk~rgevtg~K~wGTGRAraripRv~g~Gs~RSp~ga 89 (362)
T 2wwb_H 36 HTVFTSVNKNKRQAYAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTGRSGQGA 89 (362)
T ss_dssp HHHHHHHHHHHCCCCCCCSSSSCSSCCSSCCCCSSSCSCSCCCSCSSSSCSSTT
T ss_pred HHHHHHHHHhccCCCCCCCcccccccceecCCCCCeeecccccCCCCCCCcccc
Confidence 3445555555555666667777779999999999998 477887877743
No 15
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=32.22 E-value=2.1e+02 Score=23.52 Aligned_cols=63 Identities=10% Similarity=0.023 Sum_probs=37.1
Q ss_pred HcCCeEEeccCCCCC---CCh-HHHHHHHHhccCCCc-EEEEeCCCcchHHHHHHhcCCceeEEecCCCCh
Q 021591 216 AEGKLLVFEDLEVPS---HKT-KFIVNYYNQMENTKK-VLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNV 281 (310)
Q Consensus 216 ~~g~LiVVd~l~~~~---~KT-K~~~~~Lk~l~~~k~-~LiV~~~~~d~nl~~a~RNip~V~v~~~~~LNv 281 (310)
.+-+++++|+..-.. +.+ +.+.++|+. ... ++++....++..+.....+-+++.++.....|-
T Consensus 98 ~~p~llilDEigp~~~ld~~~~~~l~~~l~~---~~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r 165 (178)
T 1ye8_A 98 DRRKVIIIDEIGKMELFSKKFRDLVRQIMHD---PNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENR 165 (178)
T ss_dssp CTTCEEEECCCSTTGGGCHHHHHHHHHHHTC---TTSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTT
T ss_pred cCCCEEEEeCCCCcccCCHHHHHHHHHHHhc---CCCeEEEEEccCCCchHHHHHHhcCCcEEEEecCcCH
Confidence 456799999842111 122 223333333 233 555552245777888888888888888777663
No 16
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=21.61 E-value=1.6e+02 Score=25.55 Aligned_cols=54 Identities=15% Similarity=0.302 Sum_probs=35.5
Q ss_pred cccHHH-HHHHHHHHHHHHHHcCCeEEeccC--CCCCCChHHHHHHHHhccCCCcEEEEe
Q 021591 197 KLNKKV-RRLGLKIALSARAAEGKLLVFEDL--EVPSHKTKFIVNYYNQMENTKKVLLCD 253 (310)
Q Consensus 197 klNKK~-rrlAlrsALSaK~~~g~LiVVd~l--~~~~~KTK~~~~~Lk~l~~~k~~LiV~ 253 (310)
.+..-+ +|+|+..||.. +-+++++|+- .++....+.+.++|+.+..+..++++.
T Consensus 139 ~LSgGq~qrv~lAral~~---~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vt 195 (243)
T 1mv5_A 139 KISGGQRQRLAIARAFLR---NPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIA 195 (243)
T ss_dssp CCCHHHHHHHHHHHHHHH---CCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEEC
T ss_pred cCCHHHHHHHHHHHHHhc---CCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 344444 45677777765 5679999974 466666778888888875434555554
No 17
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=20.13 E-value=1.4e+02 Score=26.27 Aligned_cols=54 Identities=13% Similarity=0.340 Sum_probs=35.1
Q ss_pred cccHHH-HHHHHHHHHHHHHHcCCeEEeccC--CCCCCChHHHHHHHHhccCCCcEEEEe
Q 021591 197 KLNKKV-RRLGLKIALSARAAEGKLLVFEDL--EVPSHKTKFIVNYYNQMENTKKVLLCD 253 (310)
Q Consensus 197 klNKK~-rrlAlrsALSaK~~~g~LiVVd~l--~~~~~KTK~~~~~Lk~l~~~k~~LiV~ 253 (310)
.+..-+ +|+|+..||.. +-+++++|+- .++..-.+.+.++|+++..+..+++|.
T Consensus 155 ~LSgGqkqRv~lAraL~~---~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivt 211 (260)
T 2ghi_A 155 KLSGGERQRIAIARCLLK---DPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIA 211 (260)
T ss_dssp CCCHHHHHHHHHHHHHHH---CCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEEC
T ss_pred cCCHHHHHHHHHHHHHHc---CCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEc
Confidence 444444 45777777764 5679999975 355555667788888875444555555
Done!