RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 021591
         (310 letters)



>d2gycc1 c.22.1.1 (C:1-198) Ribosomal protein L4 {Escherichia coli
           [TaxId: 562]}
          Length = 198

 Score =  169 bits (430), Expect = 9e-53
 Identities = 66/193 (34%), Positives = 109/193 (56%), Gaps = 2/193 (1%)

Query: 108 NEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGT 167
            + +  + ++   F     + ++H+VV    A  +QGT + KT +EV+G+GKKPWRQKGT
Sbjct: 6   KDAQSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGT 65

Query: 168 GRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLE 227
           GRAR G+++ P +R G      +P+ H+ K+NKK+ R  LK  LS    + +L+V E   
Sbjct: 66  GRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVEKFS 125

Query: 228 VPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQH 287
           V + KTK +      M     +++      +  L LA +NLH V+V  + G++  S++  
Sbjct: 126 VEAPKTKLLAQKLKDMALEDVLIITGELDEN--LFLAARNLHKVDVRDATGIDPVSLIAF 183

Query: 288 DTLVMSRDAVNKI 300
           D +VM+ DAV ++
Sbjct: 184 DKVVMTADAVKQV 196


>d1dmga_ c.22.1.1 (A:) Ribosomal protein L4 {Thermotoga maritima
           [TaxId: 2336]}
          Length = 225

 Score =  161 bits (407), Expect = 5e-49
 Identities = 86/221 (38%), Positives = 128/221 (57%), Gaps = 18/221 (8%)

Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
           + + N   E  G + ++  VF++    D++ R V  QL+ R+ GT STKT  EVSG G+K
Sbjct: 3   VDLLNVKGEKVGTLEISDFVFNIDPNYDVMWRYVDMQLSNRRAGTASTKTRGEVSGGGRK 62

Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
           PW QK TGRARHG++R P +R G  +HGPKPR  + KLNKK+++L L+ ALS +  E KL
Sbjct: 63  PWPQKHTGRARHGSIRSPIWRHGGVVHGPKPRDWSKKLNKKMKKLALRSALSVKYRENKL 122

Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHE---KLKLATQNLHYVNVLPS- 276
           LV +DL++   KTK +      ++ + K  L       E    +KL+ +NL  V V+ + 
Sbjct: 123 LVLDDLKLERPKTKSLKEILQNLQLSDKKTLIVLPWKEEGYMNVKLSGRNLPDVKVIIAD 182

Query: 277 --------------VGLNVYSILQHDTLVMSRDAVNKIVDR 303
                          GLNV+ +L++D LV++RD V+KI + 
Sbjct: 183 NPNNSKNGEKAVRIDGLNVFDMLKYDYLVLTRDMVSKIEEV 223


>d2zjrc1 c.22.1.1 (C:2-198) Ribosomal protein L4 {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 197

 Score =  158 bits (401), Expect = 2e-48
 Identities = 69/184 (37%), Positives = 107/184 (58%), Gaps = 1/184 (0%)

Query: 117 AGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLR 176
             ++    +   ++H VV WQLA R++GT ST+T ++VS TG+K + QKGTG ARHG   
Sbjct: 13  TIELPLPEVNSGVLHEVVTWQLASRRRGTASTRTRAQVSKTGRKMYGQKGTGNARHGDRS 72

Query: 177 GPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFI 236
            P F GG    GPKPRS+   L ++VR+LGL +A+++R   GKL+  +  ++   KTK  
Sbjct: 73  VPTFVGGGVAFGPKPRSYDYTLPRQVRQLGLAMAIASRQEGGKLVAVDGFDIADAKTKNF 132

Query: 237 VNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDA 296
           +++  Q        +          + A +N+ +V+VLP  G+NVY IL+HD LV+   A
Sbjct: 133 ISWAKQNGLDGTEKVLLVTDDE-NTRRAARNVSWVSVLPVAGVNVYDILRHDRLVIDAAA 191

Query: 297 VNKI 300
           +  +
Sbjct: 192 LEIV 195


>d1vqoc1 c.22.1.1 (C:1-246) Ribosomal protein L4 {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 246

 Score =  151 bits (381), Expect = 7e-45
 Identities = 47/245 (19%), Positives = 88/245 (35%), Gaps = 43/245 (17%)

Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKT--ISEVSGTG 158
             + +      G + L  DVF+ P+R D+I + VR   A R+Q   S +   +   + + 
Sbjct: 3   ATIYDLDGNTDGEVDLP-DVFETPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPAESF 61

Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKP-RSHAIKLNKKVRRLGLKIALSARAAE 217
                Q    +      R PQ   G + H PK  +  ++ LN K R+L ++ AL+A A  
Sbjct: 62  GSGRGQAHVPKLDGRARRVPQAVKGRSAHPPKTEKDRSLDLNDKERQLAVRSALAATADA 121

Query: 218 GKL-------------LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIH------ 258
             +             +V  D      KT+ +V+    ++    +   D   I       
Sbjct: 122 DLVADRGHEFDRDEVPVVVSDDFEDLVKTQEVVSLLEALDVHADIDRADETKIKAGQGSA 181

Query: 259 ----------------EKLKLATQNLHYVNVLPSVGLNVYSILQHDTL----VMSRDAVN 298
                           ++   A +NL   +V  +  +N   +          V +  A+ 
Sbjct: 182 RGRKYRRPASILFVTSDEPSTAARNLAGADVATASEVNTEDLAPGGAPGRLTVFTESALA 241

Query: 299 KIVDR 303
           ++ +R
Sbjct: 242 EVAER 246


>d2j01f1 c.22.1.1 (F:1-208) Ribosomal protein L4 {Thermus
           thermophilus [TaxId: 274]}
          Length = 208

 Score =  145 bits (367), Expect = 2e-43
 Identities = 82/203 (40%), Positives = 112/203 (55%), Gaps = 6/203 (2%)

Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
           IPV +      G   LA       I   ++  VVRWQLAKR++GT STKT  EV+ +G+K
Sbjct: 9   IPVLSP----SGRRELA-ADLPAEINPHLLWEVVRWQLAKRRRGTASTKTRGEVAYSGRK 63

Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
            W QK TGRARHG +  P F GG  + GPKPR ++  L KKVR+ GL +A++ RA EGKL
Sbjct: 64  IWPQKHTGRARHGDIGAPIFVGGGVVFGPKPRDYSYTLPKKVRKKGLAMAVADRAREGKL 123

Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLN 280
           L+ E     + KTK  + +  +               +E ++ A +NL +V  L   GLN
Sbjct: 124 LLVEAFAGVNGKTKEFLAWAKEAGLDGSE-SVLLVTGNELVRRAARNLPWVVTLAPEGLN 182

Query: 281 VYSILQHDTLVMSRDAVNKIVDR 303
           VY I++ + LVM  DA     +R
Sbjct: 183 VYDIVRTERLVMDLDAWEVFQNR 205


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0523    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,120,341
Number of extensions: 50572
Number of successful extensions: 97
Number of sequences better than 10.0: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 7
Length of query: 310
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 225
Effective length of database: 1,240,546
Effective search space: 279122850
Effective search space used: 279122850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.7 bits)