BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021592
(310 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 329 bits (844), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 167/305 (54%), Positives = 205/305 (67%), Gaps = 10/305 (3%)
Query: 10 QLDYKYYDDTCPSLTRIVRYGVWSAISNETRMAASLLRLHFHDCFVKGCDGSVLLDDTST 69
QL Y +CP+L +IVR V A+ E RMAASL+RLHFHDCFV GCD S+LLD +
Sbjct: 1 QLSPDIYAKSCPNLVQIVRKQVAIALKAEIRMAASLIRLHFHDCFVNGCDASLLLDGADS 60
Query: 70 TKGEKNAFPNRNSARGFEVIDAIKANLEKACPATVSCTDILTLVAREAVFLGGGPFWAVP 129
EK A PN NSARGFEVID IKA +E ACP VSC DILTL AR++V L GGP W V
Sbjct: 61 ---EKLAIPNINSARGFEVIDTIKAAVENACPGVVSCADILTLAARDSVVLSGGPGWRVA 117
Query: 130 LGRRDGLTASESEANNLPSPFEPLQNITAKFTARGLDLKDVVVLSGGHTIGFAQCLSFKN 189
LGR+DGL A+++ ANNLPSPFEPL I AKF A L++ DVV LSG HT G A+C F N
Sbjct: 118 LGRKDGLVANQNSANNLPSPFEPLDAIIAKFVAVNLNITDVVALSGAHTFGQAKCAVFSN 177
Query: 190 RLFDFSGSGKPDPTLDASLLQSLQSTCPSQADSDTKLVALDSVTTNKFDNIYFQNLVNKS 249
RLF+F+G+G PD TL+ SLL +LQ+ CP +S+ LD TT+ FDN YF+NL+
Sbjct: 178 RLFNFTGAGNPDATLETSLLSNLQTVCPLGGNSNIT-APLDRSTTDTFDNNYFKNLLEGK 236
Query: 250 GLLQSDQAL----MGDNRTAAMVQYYSKYPYFFSKDFGASMVKMANIGVLTGQDGEIRKN 305
GLL SDQ L + N T +V+ YS+ F +DF +M++M NI G GE+R N
Sbjct: 237 GLLSSDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFTCAMIRMGNIS--NGASGEVRTN 294
Query: 306 CRVVN 310
CRV+N
Sbjct: 295 CRVIN 299
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 320 bits (819), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 160/304 (52%), Positives = 205/304 (67%), Gaps = 4/304 (1%)
Query: 10 QLDYKYYDDTCPSLTRIVRYGVWSAISNETRMAASLLRLHFHDCFVKGCDGSVLLDDTST 69
QL+ +Y TCP+ + IVR + A+ ++TR+ ASL+RLHFHDCFV GCD S+LLDDT +
Sbjct: 2 QLNATFYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTGS 61
Query: 70 TKGEKNAFPNRNSARGFEVIDAIKANLEKACPATVSCTDILTLVAREAVFLGGGPFWAVP 129
+ EKNA PN NSARGF V+D IK LE ACP VSC+D+L L + +V L GGP W V
Sbjct: 62 IQSEKNAGPNVNSARGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGPSWTVL 121
Query: 130 LGRRDGLTASESEAN-NLPSPFEPLQNITAKFTARGLDLKDVVVLSGGHTIGFAQCLSFK 188
LGRRD LTA+ + AN ++PSP E L NIT KF+A GL+ D+V LSG HT G A+C F
Sbjct: 122 LGRRDSLTANLAGANSSIPSPIESLSNITFKFSAVGLNTNDLVALSGAHTFGRARCGVFN 181
Query: 189 NRLFDFSGSGKPDPTLDASLLQSLQSTCPSQADSDTKLVALDSVTTNKFDNIYFQNLVNK 248
NRLF+FSG+G PDPTL+++LL +LQ CP Q S + + LD T + FDN YF NL +
Sbjct: 182 NRLFNFSGTGNPDPTLNSTLLSTLQQLCP-QNGSASTITNLDLSTPDAFDNNYFANLQSN 240
Query: 249 SGLLQSDQALMG--DNRTAAMVQYYSKYPYFFSKDFGASMVKMANIGVLTGQDGEIRKNC 306
GLLQSDQ L + T A+V ++ F + F SM+ M NI LTG +GEIR +C
Sbjct: 241 DGLLQSDQELFSTTGSSTIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSNGEIRLDC 300
Query: 307 RVVN 310
+ VN
Sbjct: 301 KKVN 304
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 291 bits (745), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 150/301 (49%), Positives = 187/301 (62%), Gaps = 9/301 (2%)
Query: 11 LDYKYYDDTCPSLTRIVRYGVWSAISNETRMAASLLRLHFHDCFVKGCDGSVLLDDTSTT 70
L +Y CP+ ++ V SA++ E RM ASLLRLHFHDCFV+GCD SVLLDDTS
Sbjct: 2 LSSNFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSNF 61
Query: 71 KGEKNAFPNRNSARGFEVIDAIKANLEKACPATVSCTDILTLVAREAVFLGGGPFWAVPL 130
GEK A PN NS RGFEVID IK+ +E CP VSC DIL + AR++V GG W V L
Sbjct: 62 TGEKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGGASWNVLL 121
Query: 131 GRRDGLTASESEAN-NLPSPFEPLQNITAKFTARGLDLKDVVVLSGGHTIGFAQCLSFKN 189
GRRD TAS S AN +LP+PF L + + F+ +G K++V LSG HTIG AQC +F+
Sbjct: 122 GRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIGQAQCTAFRT 181
Query: 190 RLFDFSGSGKPDPTLDASLLQSLQSTCPSQADSDTKLVALDSVTTNKFDNIYFQNLVNKS 249
R+++ + +D + +SLQ+ CPS DT L D T NKFDN Y+ NL NK
Sbjct: 182 RIYN-------ESNIDPTYAKSLQANCPS-VGGDTNLSPFDVTTPNKFDNAYYINLRNKK 233
Query: 250 GLLQSDQALMGDNRTAAMVQYYSKYPYFFSKDFGASMVKMANIGVLTGQDGEIRKNCRVV 309
GLL SDQ L T + V YS F+ DFG +M+KM N+ LTG G+IR NCR
Sbjct: 234 GLLHSDQQLFNGVSTDSQVTAYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQIRTNCRKT 293
Query: 310 N 310
N
Sbjct: 294 N 294
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 290 bits (741), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 154/303 (50%), Positives = 199/303 (65%), Gaps = 4/303 (1%)
Query: 11 LDYKYYDDTCPSLTRIVRYGVWSAISNETRMAASLLRLHFHDCFVKGCDGSVLLDDTSTT 70
L+ +Y TCP+ + +VR V A +++R+ ASL+RLHFHDCFV GCD S+LLD++ +
Sbjct: 4 LNATFYAGTCPNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLGCDASILLDNSGSI 63
Query: 71 KGEKNAFPNRNSARGFEVIDAIKANLEKACPATVSCTDILTLVAREAVFLGGGPFWAVPL 130
EKNA PN NSARGF V+D IK LE ACP VSCTD+L L ++ +V L GGP W V L
Sbjct: 64 ISEKNAGPNANSARGFNVVDNIKTALENACPGVVSCTDVLALASQASVSLSGGPSWTVDL 123
Query: 131 GRRDGLTASESEAN-NLPSPFEPLQNITAKFTARGLDLKDVVVLSGGHTIGFAQCLSFKN 189
GRRD LTA+++ AN ++PSP + L NIT+KF+A GL+ D+V LSG HT G A C F N
Sbjct: 124 GRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTNDLVALSGAHTFGRATCGVFSN 183
Query: 190 RLFDFSGSGKPDPTLDASLLQSLQSTCPSQADSDTKLVALDSVTTNKFDNIYFQNLVNKS 249
RLF+FSG G PDPTL+ +LL +LQ CP Q + LD T + FDN YF NL + +
Sbjct: 184 RLFNFSGKGNPDPTLNTTLLSTLQELCP-QKGRGSGSTNLDLSTPDAFDNNYFTNLQSNN 242
Query: 250 GLLQSDQALMGDNRTA--AMVQYYSKYPYFFSKDFGASMVKMANIGVLTGQDGEIRKNCR 307
GLLQSDQ L +A A+V ++ F + F SM+ M NI LTG GEIR +C+
Sbjct: 243 GLLQSDQELFSTTGSATIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSSGEIRLDCK 302
Query: 308 VVN 310
N
Sbjct: 303 KTN 305
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 282 bits (722), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 149/306 (48%), Positives = 199/306 (65%), Gaps = 6/306 (1%)
Query: 10 QLDYKYYDDTCPSLTRIVRYGVWSAISNETRMAASLLRLHFHDCFVKGCDGSVLLDDTST 69
QL +YD++CP+++ IVR + + + ++ R+AAS+LRLHFHDCFV GCD S+LLD+T++
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 70 TKGEKNAFPNRNSARGFEVIDAIKANLEKACPATVSCTDILTLVAREAVFLGGGPFWAVP 129
+ EK+AF N NSARGF VID +KA +E ACP TVSC D+LT+ A+++V L GGP W VP
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 130 LGRRDGLTASESEAN-NLPSPFEPLQNITAKFTARGLDL-KDVVVLSGGHTIGFAQCLSF 187
LGRRD L A AN NLP+PF L + F GL+ D+V LSGGHT G QC S
Sbjct: 122 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRSI 181
Query: 188 KNRLFDFSGSGKPDPTLDASLLQSLQSTCPSQADSDTKLVALDSVTTNKFDNIYFQNLVN 247
+RL++FS +G PDPTL+ + LQ+L+ CP + + LV D T FDN Y+ NL
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNL-SALVDFDLRTPTIFDNKYYVNLEE 240
Query: 248 KSGLLQSDQALMGD---NRTAAMVQYYSKYPYFFSKDFGASMVKMANIGVLTGQDGEIRK 304
+ GL+QSDQ L T +V+ ++ F F +M +M NI LTG G+IR
Sbjct: 241 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 300
Query: 305 NCRVVN 310
NCRVVN
Sbjct: 301 NCRVVN 306
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 282 bits (721), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 154/304 (50%), Positives = 201/304 (66%), Gaps = 4/304 (1%)
Query: 10 QLDYKYYDDTCPSLTRIVRYGVWSAISNETRMAASLLRLHFHDCFVKGCDGSVLLDDTST 69
QL +Y +TCP+L IV ++ A + R+ ASL+RLHFHDCFV+GCDGSVLL++T T
Sbjct: 1 QLTPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDT 60
Query: 70 TKGEKNAFPNRNSARGFEVIDAIKANLEKACPATVSCTDILTLVAREAVFLGGGPFWAVP 129
+ E++A PN NS RG +V++ IK +E +CP TVSC DIL + A A LGGGP W VP
Sbjct: 61 IESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPVP 120
Query: 130 LGRRDGLTASESEAN-NLPSPFEPLQNITAKFTARGLDLKDVVVLSGGHTIGFAQCLSFK 188
LGRRD LTA+ + AN NLP+PF L + A F +GL+ D+V LSGGHT G A+C +F
Sbjct: 121 LGRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLSGGHTFGRARCSTFI 180
Query: 189 NRLFDFSGSGKPDPTLDASLLQSLQSTCPSQADSDTKLVALDSVTTNKFDNIYFQNLVNK 248
NRL++FS +G PDPTL+ + L+ L++ CP A D L LD T ++FDN Y+ NL+
Sbjct: 181 NRLYNFSNTGNPDPTLNTTYLEVLRARCPQNATGD-NLTNLDLSTPDQFDNRYYSNLLQL 239
Query: 249 SGLLQSDQALMGD--NRTAAMVQYYSKYPYFFSKDFGASMVKMANIGVLTGQDGEIRKNC 306
+GLLQSDQ L T +V +S F +F SM+KM NIGVLTG +GEIR C
Sbjct: 240 NGLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEIRLQC 299
Query: 307 RVVN 310
VN
Sbjct: 300 NFVN 303
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 281 bits (718), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 148/306 (48%), Positives = 199/306 (65%), Gaps = 6/306 (1%)
Query: 10 QLDYKYYDDTCPSLTRIVRYGVWSAISNETRMAASLLRLHFHDCFVKGCDGSVLLDDTST 69
QL +YD++CP+++ IVR + + + ++ R+AAS+LRLHFHDCFV GCD S+LLD+T++
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 70 TKGEKNAFPNRNSARGFEVIDAIKANLEKACPATVSCTDILTLVAREAVFLGGGPFWAVP 129
+ EK+AF N NSARGF VID +KA +E ACP TVSC D+LT+ A+++V L GGP W VP
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 130 LGRRDGLTASESEAN-NLPSPFEPLQNITAKFTARGLDL-KDVVVLSGGHTIGFAQCLSF 187
LGRRD L A AN NLP+PF L + F GL+ D+V LSGGHT G QC
Sbjct: 122 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 188 KNRLFDFSGSGKPDPTLDASLLQSLQSTCPSQADSDTKLVALDSVTTNKFDNIYFQNLVN 247
+RL++FS +G PDPTL+ + LQ+L+ CP + + LV +D T FDN Y+ NL
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNL-SALVDMDLRTPTIFDNKYYVNLEE 240
Query: 248 KSGLLQSDQALMGD---NRTAAMVQYYSKYPYFFSKDFGASMVKMANIGVLTGQDGEIRK 304
+ GL+QSDQ L T +V+ ++ F F +M +M NI LTG G+IR
Sbjct: 241 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 300
Query: 305 NCRVVN 310
NCRVVN
Sbjct: 301 NCRVVN 306
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 280 bits (716), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 148/306 (48%), Positives = 198/306 (64%), Gaps = 6/306 (1%)
Query: 10 QLDYKYYDDTCPSLTRIVRYGVWSAISNETRMAASLLRLHFHDCFVKGCDGSVLLDDTST 69
QL +YD++CP+++ IVR + + + ++ R+AAS+LRLHFHDCFV GCD S+LLD+T++
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 70 TKGEKNAFPNRNSARGFEVIDAIKANLEKACPATVSCTDILTLVAREAVFLGGGPFWAVP 129
+ EK+AF N NSARGF VID +KA +E ACP TVSC D+LT+ A+++V L GGP W VP
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 130 LGRRDGLTASESEAN-NLPSPFEPLQNITAKFTARGLDL-KDVVVLSGGHTIGFAQCLSF 187
LGRRD L A AN NLP+PF L + F GL+ D+V LSGGHT G QC
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 180
Query: 188 KNRLFDFSGSGKPDPTLDASLLQSLQSTCPSQADSDTKLVALDSVTTNKFDNIYFQNLVN 247
+RL++FS +G PDPTL+ + LQ+L+ CP + + LV D T FDN Y+ NL
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNL-SALVDFDLRTPTIFDNKYYVNLEE 239
Query: 248 KSGLLQSDQALMGD---NRTAAMVQYYSKYPYFFSKDFGASMVKMANIGVLTGQDGEIRK 304
+ GL+QSDQ L T +V+ ++ F F +M +M NI LTG G+IR
Sbjct: 240 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 299
Query: 305 NCRVVN 310
NCRVVN
Sbjct: 300 NCRVVN 305
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 280 bits (715), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 148/306 (48%), Positives = 198/306 (64%), Gaps = 6/306 (1%)
Query: 10 QLDYKYYDDTCPSLTRIVRYGVWSAISNETRMAASLLRLHFHDCFVKGCDGSVLLDDTST 69
QL +YD++CP+++ IVR + + + ++ R+AAS+LRLHFHDCFV GCD S+LLD+T++
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 70 TKGEKNAFPNRNSARGFEVIDAIKANLEKACPATVSCTDILTLVAREAVFLGGGPFWAVP 129
+ EK+AF N NSARGF VID +KA +E ACP TVSC D+LT+ A+++V L GGP W VP
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 130 LGRRDGLTASESEAN-NLPSPFEPLQNITAKFTARGLDL-KDVVVLSGGHTIGFAQCLSF 187
LGRRD L A AN NLP+PF L + F GL+ D+V LSGGHT G QC
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 180
Query: 188 KNRLFDFSGSGKPDPTLDASLLQSLQSTCPSQADSDTKLVALDSVTTNKFDNIYFQNLVN 247
+RL++FS +G PDPTL+ + LQ+L+ CP + + LV D T FDN Y+ NL
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNL-SALVDFDLRTPTIFDNKYYVNLEE 239
Query: 248 KSGLLQSDQALMGD---NRTAAMVQYYSKYPYFFSKDFGASMVKMANIGVLTGQDGEIRK 304
+ GL+QSDQ L T +V+ ++ F F +M +M NI LTG G+IR
Sbjct: 240 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 299
Query: 305 NCRVVN 310
NCRVVN
Sbjct: 300 NCRVVN 305
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 279 bits (714), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 148/306 (48%), Positives = 198/306 (64%), Gaps = 6/306 (1%)
Query: 10 QLDYKYYDDTCPSLTRIVRYGVWSAISNETRMAASLLRLHFHDCFVKGCDGSVLLDDTST 69
QL +YD++CP+++ IVR + + + ++ R+AAS+LRLHFHDCFV GCD S+LLD+T++
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 70 TKGEKNAFPNRNSARGFEVIDAIKANLEKACPATVSCTDILTLVAREAVFLGGGPFWAVP 129
+ EK+AF N NSARGF VID +KA +E ACP TVSC D+LT+ A+++V L GGP W VP
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 130 LGRRDGLTASESEAN-NLPSPFEPLQNITAKFTARGLDL-KDVVVLSGGHTIGFAQCLSF 187
LGRRD L A AN NLP+PF L + F GL+ D+V LSGGHT G QC
Sbjct: 122 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 188 KNRLFDFSGSGKPDPTLDASLLQSLQSTCPSQADSDTKLVALDSVTTNKFDNIYFQNLVN 247
+RL++FS +G PDPTL+ + LQ+L+ CP + + LV D T FDN Y+ NL
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNL-SALVDFDLRTPTIFDNKYYVNLEE 240
Query: 248 KSGLLQSDQALMGD---NRTAAMVQYYSKYPYFFSKDFGASMVKMANIGVLTGQDGEIRK 304
+ GL+QSDQ L T +V+ ++ F F +M +M NI LTG G+IR
Sbjct: 241 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 300
Query: 305 NCRVVN 310
NCRVVN
Sbjct: 301 NCRVVN 306
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 279 bits (714), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 148/306 (48%), Positives = 198/306 (64%), Gaps = 6/306 (1%)
Query: 10 QLDYKYYDDTCPSLTRIVRYGVWSAISNETRMAASLLRLHFHDCFVKGCDGSVLLDDTST 69
QL +YD++CP+++ IVR + + + ++ R+AAS+LRLHFHDCFV GCD S+LLD+T++
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 70 TKGEKNAFPNRNSARGFEVIDAIKANLEKACPATVSCTDILTLVAREAVFLGGGPFWAVP 129
+ EK+AF N NSARGF VID +KA +E ACP TVSC D+LT+ A+++V L GGP W VP
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 130 LGRRDGLTASESEAN-NLPSPFEPLQNITAKFTARGLDL-KDVVVLSGGHTIGFAQCLSF 187
LGRRD L A AN NLP+PF L + F GL+ D+V LSGGHT G QC
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 180
Query: 188 KNRLFDFSGSGKPDPTLDASLLQSLQSTCPSQADSDTKLVALDSVTTNKFDNIYFQNLVN 247
+RL++FS +G PDPTL+ + LQ+L+ CP + + LV D T FDN Y+ NL
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNL-SALVDFDLRTPTIFDNKYYVNLEE 239
Query: 248 KSGLLQSDQALMGD---NRTAAMVQYYSKYPYFFSKDFGASMVKMANIGVLTGQDGEIRK 304
+ GL+QSDQ L T +V+ ++ F F +M +M NI LTG G+IR
Sbjct: 240 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 299
Query: 305 NCRVVN 310
NCRVVN
Sbjct: 300 NCRVVN 305
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 279 bits (714), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 148/306 (48%), Positives = 197/306 (64%), Gaps = 6/306 (1%)
Query: 10 QLDYKYYDDTCPSLTRIVRYGVWSAISNETRMAASLLRLHFHDCFVKGCDGSVLLDDTST 69
QL +YD++CP+++ IVR + + + ++ R+AAS+LRLHFHDCFV GCD S+LLD+T++
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 70 TKGEKNAFPNRNSARGFEVIDAIKANLEKACPATVSCTDILTLVAREAVFLGGGPFWAVP 129
+ EK+AF N NSARGF VID +KA +E ACP TVSC D+LT+ A+++V L GGP W VP
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 130 LGRRDGLTASESEAN-NLPSPFEPLQNITAKFTARGLDL-KDVVVLSGGHTIGFAQCLSF 187
LGRRD L A AN NLP PF L + F GL+ D+V LSGGHT G QC
Sbjct: 122 LGRRDSLQAFLDLANANLPQPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 188 KNRLFDFSGSGKPDPTLDASLLQSLQSTCPSQADSDTKLVALDSVTTNKFDNIYFQNLVN 247
+RL++FS +G PDPTL+ + LQ+L+ CP + + LV D T FDN Y+ NL
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNL-SALVDFDLRTPTIFDNKYYVNLEE 240
Query: 248 KSGLLQSDQALMGD---NRTAAMVQYYSKYPYFFSKDFGASMVKMANIGVLTGQDGEIRK 304
+ GL+QSDQ L T +V+ ++ F F +M +M NI LTG G+IR
Sbjct: 241 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 300
Query: 305 NCRVVN 310
NCRVVN
Sbjct: 301 NCRVVN 306
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 279 bits (713), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 148/306 (48%), Positives = 197/306 (64%), Gaps = 6/306 (1%)
Query: 10 QLDYKYYDDTCPSLTRIVRYGVWSAISNETRMAASLLRLHFHDCFVKGCDGSVLLDDTST 69
QL +YD++CP+++ IVR + + + ++ R+AAS+LRLHFHDCFV GCD S+LLD+T++
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 70 TKGEKNAFPNRNSARGFEVIDAIKANLEKACPATVSCTDILTLVAREAVFLGGGPFWAVP 129
+ EK+AF N NSARGF VID +KA +E ACP TVSC D+LT+ A+++V L GGP W VP
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 130 LGRRDGLTASESEAN-NLPSPFEPLQNITAKFTARGLDL-KDVVVLSGGHTIGFAQCLSF 187
LGRRD L A AN NLP PF L + F GL+ D+V LSGGHT G QC
Sbjct: 122 LGRRDSLQAFLDLANANLPGPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 188 KNRLFDFSGSGKPDPTLDASLLQSLQSTCPSQADSDTKLVALDSVTTNKFDNIYFQNLVN 247
+RL++FS +G PDPTL+ + LQ+L+ CP + + LV D T FDN Y+ NL
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNL-SALVDFDLRTPTIFDNKYYVNLEE 240
Query: 248 KSGLLQSDQALMGD---NRTAAMVQYYSKYPYFFSKDFGASMVKMANIGVLTGQDGEIRK 304
+ GL+QSDQ L T +V+ ++ F F +M +M NI LTG G+IR
Sbjct: 241 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 300
Query: 305 NCRVVN 310
NCRVVN
Sbjct: 301 NCRVVN 306
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 278 bits (711), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 147/306 (48%), Positives = 198/306 (64%), Gaps = 6/306 (1%)
Query: 10 QLDYKYYDDTCPSLTRIVRYGVWSAISNETRMAASLLRLHFHDCFVKGCDGSVLLDDTST 69
QL +YD++CP+++ IVR + + + ++ R+AAS+LRLHFHDCFV GCD S+LLD+T++
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 70 TKGEKNAFPNRNSARGFEVIDAIKANLEKACPATVSCTDILTLVAREAVFLGGGPFWAVP 129
+ EK+AF N NSARGF VID +KA +E ACP TVSC D+LT+ A+++V L GGP W VP
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 130 LGRRDGLTASESEAN-NLPSPFEPLQNITAKFTARGLDL-KDVVVLSGGHTIGFAQCLSF 187
LGRRD L A AN NLP+PF L + F GL+ D+V LSGGH+ G QC
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHSFGKNQCRFI 180
Query: 188 KNRLFDFSGSGKPDPTLDASLLQSLQSTCPSQADSDTKLVALDSVTTNKFDNIYFQNLVN 247
+RL++FS +G PDPTL+ + LQ+L+ CP + + LV D T FDN Y+ NL
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNL-SALVDFDLRTPTIFDNKYYVNLEE 239
Query: 248 KSGLLQSDQALMGD---NRTAAMVQYYSKYPYFFSKDFGASMVKMANIGVLTGQDGEIRK 304
+ GL+QSDQ L T +V+ ++ F F +M +M NI LTG G+IR
Sbjct: 240 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 299
Query: 305 NCRVVN 310
NCRVVN
Sbjct: 300 NCRVVN 305
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 277 bits (709), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 147/306 (48%), Positives = 197/306 (64%), Gaps = 6/306 (1%)
Query: 10 QLDYKYYDDTCPSLTRIVRYGVWSAISNETRMAASLLRLHFHDCFVKGCDGSVLLDDTST 69
QL +YD++CP+++ IVR + + + ++ R+AAS+LRLHFHDCFV GCD S+LLD+T++
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 70 TKGEKNAFPNRNSARGFEVIDAIKANLEKACPATVSCTDILTLVAREAVFLGGGPFWAVP 129
+ EK+AF N NSARGF VID +KA +E ACP TVSC D+LT+ A+++V L GGP W VP
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 130 LGRRDGLTASESEAN-NLPSPFEPLQNITAKFTARGLDL-KDVVVLSGGHTIGFAQCLSF 187
LGRRD L A AN NLP+PF L + F GL+ D+V L GGHT G QC
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALYGGHTFGKNQCRFI 180
Query: 188 KNRLFDFSGSGKPDPTLDASLLQSLQSTCPSQADSDTKLVALDSVTTNKFDNIYFQNLVN 247
+RL++FS +G PDPTL+ + LQ+L+ CP + + LV D T FDN Y+ NL
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNL-SALVDFDLRTPTIFDNKYYVNLEE 239
Query: 248 KSGLLQSDQALMGD---NRTAAMVQYYSKYPYFFSKDFGASMVKMANIGVLTGQDGEIRK 304
+ GL+QSDQ L T +V+ ++ F F +M +M NI LTG G+IR
Sbjct: 240 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 299
Query: 305 NCRVVN 310
NCRVVN
Sbjct: 300 NCRVVN 305
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 276 bits (707), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 147/306 (48%), Positives = 197/306 (64%), Gaps = 6/306 (1%)
Query: 10 QLDYKYYDDTCPSLTRIVRYGVWSAISNETRMAASLLRLHFHDCFVKGCDGSVLLDDTST 69
QL +YD++CP+++ IVR + + + ++ R+AAS+LRLHF DCFV GCD S+LLD+T++
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFEDCFVNGCDASILLDNTTS 61
Query: 70 TKGEKNAFPNRNSARGFEVIDAIKANLEKACPATVSCTDILTLVAREAVFLGGGPFWAVP 129
+ EK+AF N NSARGF VID +KA +E ACP TVSC D+LT+ A+++V L GGP W VP
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 130 LGRRDGLTASESEAN-NLPSPFEPLQNITAKFTARGLDL-KDVVVLSGGHTIGFAQCLSF 187
LGRRD L A AN NLP+PF L + F GL+ D+V LSGGHT G QC
Sbjct: 122 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 188 KNRLFDFSGSGKPDPTLDASLLQSLQSTCPSQADSDTKLVALDSVTTNKFDNIYFQNLVN 247
+RL++FS +G PDPTL+ + LQ+L+ CP + + LV D T FDN Y+ NL
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNL-SALVDFDLRTPTIFDNKYYVNLEE 240
Query: 248 KSGLLQSDQALMGD---NRTAAMVQYYSKYPYFFSKDFGASMVKMANIGVLTGQDGEIRK 304
+ GL+QSDQ L T +V+ ++ F F +M +M NI LTG G+IR
Sbjct: 241 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 300
Query: 305 NCRVVN 310
NCRVVN
Sbjct: 301 NCRVVN 306
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 273 bits (699), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 146/306 (47%), Positives = 196/306 (64%), Gaps = 6/306 (1%)
Query: 10 QLDYKYYDDTCPSLTRIVRYGVWSAISNETRMAASLLRLHFHDCFVKGCDGSVLLDDTST 69
QL +YD++CP+++ IVR + + + ++ R+AAS+L LHF DCFV GCD S+LLD+T++
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILSLHFEDCFVNGCDASILLDNTTS 60
Query: 70 TKGEKNAFPNRNSARGFEVIDAIKANLEKACPATVSCTDILTLVAREAVFLGGGPFWAVP 129
+ EK+AF N NSARGF VID +KA +E ACP TVSC D+LT+ A+++V L GGP W VP
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 130 LGRRDGLTASESEAN-NLPSPFEPLQNITAKFTARGLDL-KDVVVLSGGHTIGFAQCLSF 187
LGRRD L A AN NLP+PF L + F GL+ D+V LSGGHT G QC
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 180
Query: 188 KNRLFDFSGSGKPDPTLDASLLQSLQSTCPSQADSDTKLVALDSVTTNKFDNIYFQNLVN 247
+RL++FS +G PDPTL+ + LQ+L+ CP + + LV D T FDN Y+ NL
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNL-SALVDFDLRTPTIFDNKYYVNLEE 239
Query: 248 KSGLLQSDQALMGD---NRTAAMVQYYSKYPYFFSKDFGASMVKMANIGVLTGQDGEIRK 304
+ GL+QSDQ L T +V+ ++ F F +M +M NI LTG G+IR
Sbjct: 240 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 299
Query: 305 NCRVVN 310
NCRVVN
Sbjct: 300 NCRVVN 305
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 246 bits (627), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 133/302 (44%), Positives = 182/302 (60%), Gaps = 2/302 (0%)
Query: 11 LDYKYYDDTCPSLTRIVRYGVWSAISNETRMAASLLRLHFHDCFVKGCDGSVLLDDTSTT 70
L +Y+ +CP+ +V+ V +A +N + +A L+R+HFHDCFV+GCD SVLLD T+
Sbjct: 2 LQIGFYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANN 61
Query: 71 KGEKNAFPNRNSARGFEVIDAIKANLEKACPATVSCTDILTLVAREAVFLGGGPFWAVPL 130
EK+A PN S RGFEVI A K+ +E ACP TVSC DIL AR++ L G + VP
Sbjct: 62 TAEKDAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQVPS 121
Query: 131 GRRDGLTASESEAN-NLPSPFEPLQNITAKFTARGLDLKDVVVLSGGHTIGFAQCLSFKN 189
GRRDG + SEAN +PSP + F + L ++V LSG H+IG A C SF N
Sbjct: 122 GRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSGAHSIGVAHCSSFTN 181
Query: 190 RLFDFSGSGKPDPTLDASLLQSLQSTCPSQADSDTKL-VALDSVTTNKFDNIYFQNLVNK 248
RL++F+ DPTL S L++TCP+ + T + V+LD +T + DN+Y+ +
Sbjct: 182 RLYNFNSGSGIDPTLSPSYAALLRNTCPANSTRFTPITVSLDIITPSVLDNMYYTGVQLT 241
Query: 249 SGLLQSDQALMGDNRTAAMVQYYSKYPYFFSKDFGASMVKMANIGVLTGQDGEIRKNCRV 308
GLL SDQAL+ + +A V+ + ++ F +MVKM I VLTG GEIR NC V
Sbjct: 242 LGLLTSDQALVTEANLSAAVKANAMNLTAWASKFAQAMVKMGQIEVLTGTQGEIRTNCSV 301
Query: 309 VN 310
VN
Sbjct: 302 VN 303
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 237 bits (605), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 136/310 (43%), Positives = 190/310 (61%), Gaps = 15/310 (4%)
Query: 7 VSCQLDYKYYDDTCPSLTRIVRYGVWSAISNETRMAASLLRLHFHDCFVKGCDGSVLLDD 66
V+ L + +Y TCP IVR V A+ + +AA LLRLHFHDCFV+GCD SVLLD
Sbjct: 5 VAPGLSFDFYWQTCPRAESIVREFVQEAVRKDIGLAAGLLRLHFHDCFVQGCDASVLLDG 64
Query: 67 TSTTKGEKNAFPN---RNSARGFEVIDAIKANLEKACP-ATVSCTDILTLVAREAVFLGG 122
++T GE+ A PN R SA F+ ++ I+ LE+ C A VSC+DIL L AR++V + G
Sbjct: 65 SATGPGEQQAPPNLTLRPSA--FKAVNDIRDRLERECRGAVVSCSDILALAARDSVVVSG 122
Query: 123 GPFWAVPLGRRD--GLTASESEANNLPSPFEPLQNITAKFTARGLDLKDVVVLSGGHTIG 180
GP + VPLGRRD +++ ++LP P +Q++ A GLD D+V +SGGHTIG
Sbjct: 123 GPDYRVPLGRRDSRSFASTQDVLSDLPGPSSNVQSLLALLGRLGLDATDLVTISGGHTIG 182
Query: 181 FAQCLSFKNRLFDFSGSGKPDPTLDASLLQSLQSTCPSQADSDTKLVALDSVTTNKFDNI 240
A C SF++RLF +PDPT+ + L L+ TCP++ +D + V LD T N FDN
Sbjct: 183 LAHCSSFEDRLFP-----RPDPTISPTFLSRLKRTCPAKG-TDRRTV-LDVRTPNVFDNK 235
Query: 241 YFQNLVNKSGLLQSDQALMGDNRTAAMVQYYSKYPYFFSKDFGASMVKMANIGVLTGQDG 300
Y+ +LVN+ GL SDQ L + T +V+ +++ F + FG S+ KM + V T G
Sbjct: 236 YYIDLVNREGLFVSDQDLFTNAITRPIVERFAQSQQDFFEQFGVSIGKMGQMRVRTSDQG 295
Query: 301 EIRKNCRVVN 310
E+R+NC V N
Sbjct: 296 EVRRNCSVRN 305
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 88/204 (43%), Gaps = 34/204 (16%)
Query: 104 VSCTDILTLVAREAVFLGGGPFWAVPLGRRDGLTASES--EANNLP--SPFEPLQNITAK 159
V+ D+ L + A+ GGP + GR D +T E E LP P P Q++
Sbjct: 87 VTYADLFQLASATAIEEAGGPKIPMKYGRVD-VTEPEQCPEEGRLPDAGPPSPAQHLRDV 145
Query: 160 FTARGLDLKDVVVLSGGHTIGFAQCLSFKNRLFDFSGSGKPDP--TLDASLLQSLQSTCP 217
F GL+ K++V LSG HT+G ++ D SG GKP+ T D QS
Sbjct: 146 FYRMGLNDKEIVALSGAHTLGRSRP--------DRSGWGKPETKYTKDGPGAPGGQSW-- 195
Query: 218 SQADSDTKLVALDSVTTNKFDNIYFQNLVNKSG----LLQSDQALMGDNRTAAMVQYYSK 273
+ KFDN YF+++ + +L +D AL D + Y+
Sbjct: 196 -------------TAQWLKFDNSYFKDIKERRDEDLLVLPTDAALFEDPSFKVYAEKYAA 242
Query: 274 YPYFFSKDFGASMVKMANIGVLTG 297
P F KD+ + K++N+G G
Sbjct: 243 DPEAFFKDYAEAHAKLSNLGAKFG 266
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 112/285 (39%), Gaps = 41/285 (14%)
Query: 21 PSLTRIVRYGVWSAISNETRMAASLLRLHFH-----DCFVKGCDGSVLLDDTSTTKGEKN 75
P R +R + IS + + SL+RL +H DCF K DGS ++++ + +
Sbjct: 6 PFDIRALRADIEDMISEKLELGPSLIRLAWHEAASYDCFKK--DGSP---NSASMRFKPE 60
Query: 76 AFPNRNSARGFEVIDAIKANLEKACPATVSCTDILTLVAREAVFLGGGPFWAVPLGRRDG 135
N +G ++ L+K P +S D+ L A A+ GGP GR D
Sbjct: 61 CLYAGN--KGLDIPRKALETLKKKYP-QISYADLWVLAAYVAIEYMGGPTIPFCWGRVDA 117
Query: 136 LTASESEAN-NLPSPFEPLQNITAKFTARGLDLKDVVVLSGGHTIGFAQCLSFKNRLFDF 194
S + LP + ++ F G + ++ V L G HT G +C +F
Sbjct: 118 KDGSVCGPDGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCG--ECH------IEF 169
Query: 195 SGSGKP----DPTLDASLLQSLQSTCPSQADSDTKLVALDSVTTNKFDNIYFQN-LVNKS 249
SG P D S T+L+ D V K + + + K
Sbjct: 170 SGYHGPWTHDKNGFDNSFF--------------TQLLDEDWVLNPKVEQMQLMDRATTKL 215
Query: 250 GLLQSDQALMGDNRTAAMVQYYSKYPYFFSKDFGASMVKMANIGV 294
+L SD L+ D V+ Y+K F+KDF + K+ +G
Sbjct: 216 MMLPSDVCLLLDPSYRKYVELYAKDNDRFNKDFANAFKKLTELGT 260
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 112/285 (39%), Gaps = 41/285 (14%)
Query: 21 PSLTRIVRYGVWSAISNETRMAASLLRLHFH-----DCFVKGCDGSVLLDDTSTTKGEKN 75
P R +R + IS + + SL+RL +H DCF K DGS ++++ + +
Sbjct: 5 PFDIRALRADIEDMISEKLELGPSLIRLAWHEAASYDCFKK--DGSP---NSASMRFKPE 59
Query: 76 AFPNRNSARGFEVIDAIKANLEKACPATVSCTDILTLVAREAVFLGGGPFWAVPLGRRDG 135
N +G ++ L+K P +S D+ L A A+ GGP GR D
Sbjct: 60 CLYAGN--KGLDIPRKALETLKKKYP-QISYADLWVLAAYVAIEYMGGPTIPFCWGRVDA 116
Query: 136 LTASESEAN-NLPSPFEPLQNITAKFTARGLDLKDVVVLSGGHTIGFAQCLSFKNRLFDF 194
S + LP + ++ F G + ++ V L G HT G +C +F
Sbjct: 117 KDGSVCGPDGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCG--ECH------IEF 168
Query: 195 SGSGKP----DPTLDASLLQSLQSTCPSQADSDTKLVALDSVTTNKFDNIYFQN-LVNKS 249
SG P D S T+L+ D V K + + + K
Sbjct: 169 SGYHGPWTHDKNGFDNSFF--------------TQLLDEDWVLNPKVEQMQLMDRATTKL 214
Query: 250 GLLQSDQALMGDNRTAAMVQYYSKYPYFFSKDFGASMVKMANIGV 294
+L SD L+ D V+ Y+K F+KDF + K+ +G
Sbjct: 215 MMLPSDVCLLLDPSYRKYVELYAKDNDRFNKDFANAFKKLTELGT 259
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 110/285 (38%), Gaps = 41/285 (14%)
Query: 21 PSLTRIVRYGVWSAISNETRMAASLLRLHFH-----DCFVKGCDGSVLLDDTSTTKGEKN 75
P R +R + IS + + SL+RL +H DCF K DGS ++++ + +
Sbjct: 6 PFDIRALRADIEDMISEKLELGPSLIRLAWHEAASYDCFKK--DGSP---NSASMRFKPE 60
Query: 76 AFPNRNSARGFEVIDAIKANLEKACPATVSCTDILTLVAREAVFLGGGPFWAVPLGRRDG 135
N +G ++ L+K P +S D+ L A A+ GGP GR D
Sbjct: 61 CLYAGN--KGLDIPRKALETLKKKYP-QISYADLWVLAAYVAIEYMGGPTIPFCWGRVDA 117
Query: 136 LTASESEAN-NLPSPFEPLQNITAKFTARGLDLKDVVVLSGGHTIGFAQCLSFKNRLFDF 194
S + LP + ++ F G + ++ V L G HT G +F
Sbjct: 118 KDGSVCGPDGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGETH--------IEF 169
Query: 195 SGSGKP----DPTLDASLLQSLQSTCPSQADSDTKLVALDSVTTNKFDNIYFQN-LVNKS 249
SG P D S T+L+ D V K + + + K
Sbjct: 170 SGYHGPWTHDKNGFDNSFF--------------TQLLDEDWVLNPKVEQMQLMDRATTKL 215
Query: 250 GLLQSDQALMGDNRTAAMVQYYSKYPYFFSKDFGASMVKMANIGV 294
+L SD L+ D V+ Y+K F+KDF + K+ +G
Sbjct: 216 MMLPSDVCLLLDPSYRKYVELYAKDNDRFNKDFANAFKKLTELGT 260
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 77/195 (39%), Gaps = 44/195 (22%)
Query: 104 VSCTDILTLVAREAVFLGGGPFWAVPLGRRDGLTASESEANNLPSPFEPLQNITAKF-TA 162
VS D L AV + GGP GR D LP + ++ F A
Sbjct: 90 VSYADFYQLAGVVAVEITGGPEVPFHPGRED--KPEPPPEGRLPDATKGSDHLRDVFGKA 147
Query: 163 RGLDLKDVVVLSGGHTIGFAQCLSFKNRLFDFSGSGKPDPTLDASLLQSLQSTCPSQADS 222
GL +D+V LSGGHTIG A K R F G +P +
Sbjct: 148 MGLSDQDIVALSGGHTIGAAH----KERS-GFEGPWTSNPLI------------------ 184
Query: 223 DTKLVALDSVTTNKFDNIYFQNLV--NKSGLLQ--SDQALMGDNRTAAMVQYYSKYPYFF 278
FDN YF L+ K GLLQ SD+AL+ D+ +V+ Y+ F
Sbjct: 185 --------------FDNSYFTELLTGEKDGLLQLPSDKALLTDSVFRPLVEKYAADEDVF 230
Query: 279 SKDFGASMVKMANIG 293
D+ + +K++ +G
Sbjct: 231 FADYAEAHLKLSELG 245
>pdb|2VKA|A Chain A, Site-directed Mutagenesis Of The Catalytic Tryptophan
Environment In Pleurotus Eryngii Versatile Peroxidase
Length = 317
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 105/277 (37%), Gaps = 50/277 (18%)
Query: 46 LRLHFHDCFV-------KGCDGSVLLDDTSTTKGEKNAFPNRNSARGFEVIDAIKANLEK 98
LRL FHD G DGS++ DT T NA + E++ A K + K
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID-------EIVSAQKPFVAK 94
Query: 99 ACPATVSCTDILTLVAREAVF-LGGG---PFWAVPLGRRDGLTASESEANNLPSPFEPLQ 154
+S D + V GG PF+ LGR D + AS +P PF+ +
Sbjct: 95 H---NISAGDFIQFAGAVGVSNCPGGVRIPFF---LGRPDAVAASPDHL--VPEPFDSVD 146
Query: 155 NITAKFTARGLDLKDVVVLSGGHTIGFAQCLSFKNRLFDFSGSGKPDPTLDASLLQSLQS 214
+I A+ G +VV L H+I A K DP++ + S
Sbjct: 147 SILARMGDAGFSPVEVVWLLASHSIAAAD---------------KVDPSIPGTPFDSTPG 191
Query: 215 TCPSQADSDTKLVA--LDSVTTNKFDNIYFQNLVNKSGLLQSDQALMGDNRTAAMVQYYS 272
SQ +T+L NK + Q+ + LQSD L D +TA Q +
Sbjct: 192 VFDSQFFIETQLKGRLFPGTADNKGEA---QSPLQGEIRLQSDHLLARDPQTACEWQSFV 248
Query: 273 KYPYFFSKDFGASMVKMANIGVLTGQDGEIRKNCRVV 309
F A+M KMA L GQD +C V
Sbjct: 249 NNQPKIQNRFAATMSKMA----LLGQDKTKLIDCSDV 281
>pdb|2W23|A Chain A, Structure Of Mutant W169y Of Pleurotus Eryngii Versatile
Peroxidase (Vp)
Length = 316
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 104/277 (37%), Gaps = 50/277 (18%)
Query: 46 LRLHFHDCFV-------KGCDGSVLLDDTSTTKGEKNAFPNRNSARGFEVIDAIKANLEK 98
LRL FHD G DGS++ DT T NA + E++ A K + K
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID-------EIVSAQKPFVAK 94
Query: 99 ACPATVSCTDILTLVAREAVF-LGGG---PFWAVPLGRRDGLTASESEANNLPSPFEPLQ 154
+S D + V GG PF+ LGR D + AS +P PF+ +
Sbjct: 95 H---NISAGDFIQFAGAVGVSNCPGGVRIPFF---LGRPDAVAASPDHL--VPEPFDSVD 146
Query: 155 NITAKFTARGLDLKDVVVLSGGHTIGFAQCLSFKNRLFDFSGSGKPDPTLDASLLQSLQS 214
+I A+ G +VV L H+I A K DP++ + S
Sbjct: 147 SILARMGDAGFSPVEVVYLLASHSIAAAD---------------KVDPSIPGTPFDSTPG 191
Query: 215 TCPSQADSDTKLVA--LDSVTTNKFDNIYFQNLVNKSGLLQSDQALMGDNRTAAMVQYYS 272
SQ +T+L NK + Q+ + LQSD L D +TA Q
Sbjct: 192 VFDSQFFIETQLKGRLFPGTADNKGEA---QSPLQGEIRLQSDHLLARDPQTACEWQSMV 248
Query: 273 KYPYFFSKDFGASMVKMANIGVLTGQDGEIRKNCRVV 309
F A+M KMA L GQD +C V
Sbjct: 249 NNQPKIQNRFAATMSKMA----LLGQDKTKLIDCSDV 281
>pdb|3FM4|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 105/277 (37%), Gaps = 50/277 (18%)
Query: 46 LRLHFHDCFV-------KGCDGSVLLDDTSTTKGEKNAFPNRNSARGFEVIDAIKANLEK 98
LRL FHD G DGS++ DT T NA + E++ A K + K
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID-------EIVSAQKPFVAK 94
Query: 99 ACPATVSCTDILTLVAREAVF-LGGG---PFWAVPLGRRDGLTASESEANNLPSPFEPLQ 154
+S D + V GG PF+ LGR D + AS +P PF+ +
Sbjct: 95 H---NISAGDFIQFAGAVGVSNCPGGVRIPFF---LGRPDAVAASPDHL--VPEPFDSVD 146
Query: 155 NITAKFTARGLDLKDVVVLSGGHTIGFAQCLSFKNRLFDFSGSGKPDPTLDASLLQSLQS 214
+I A+ G +VV L H+I + + K DP++ + S
Sbjct: 147 SILARMGDAGFSPVEVVWLLASHSI---------------AAAAKVDPSIPGTPFDSTPG 191
Query: 215 TCPSQADSDTKLVA--LDSVTTNKFDNIYFQNLVNKSGLLQSDQALMGDNRTAAMVQYYS 272
SQ +T+L NK + Q+ + LQSD L D +TA Q
Sbjct: 192 VFDSQFFIETQLKGRLFPGTADNKGEA---QSPLQGEIRLQSDHLLARDPQTACEWQSMV 248
Query: 273 KYPYFFSKDFGASMVKMANIGVLTGQDGEIRKNCRVV 309
F A+M KMA L GQD +C V
Sbjct: 249 NNQPKIQNRFAATMSKMA----LLGQDKTKLIDCSDV 281
>pdb|4FDQ|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 104/277 (37%), Gaps = 50/277 (18%)
Query: 46 LRLHFHDCFV-------KGCDGSVLLDDTSTTKGEKNAFPNRNSARGFEVIDAIKANLEK 98
LRL FHD G DGS++ DT T NA + E++ A K + K
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID-------EIVSAQKPFVAK 94
Query: 99 ACPATVSCTDILTLVAREAVF-LGGG---PFWAVPLGRRDGLTASESEANNLPSPFEPLQ 154
+S D + V GG PF+ LGR D + AS +P PF+ +
Sbjct: 95 H---NISAGDFIQFAGAVGVSNCPGGVRIPFF---LGRPDAVAASPDHL--VPGPFDSVD 146
Query: 155 NITAKFTARGLDLKDVVVLSGGHTIGFAQCLSFKNRLFDFSGSGKPDPTLDASLLQSLQS 214
+I A+ G +VV L H+I A K DP++ + S
Sbjct: 147 SILARMGDAGFSPVEVVWLLASHSIAAAD---------------KVDPSIPGTPFDSTPE 191
Query: 215 TCPSQADSDTKLVA--LDSVTTNKFDNIYFQNLVNKSGLLQSDQALMGDNRTAAMVQYYS 272
SQ +T+L NK + Q+ + LQSD L D +TA Q
Sbjct: 192 VFDSQFFIETQLKGRLFPGTADNKGEA---QSPLQGEIRLQSDHLLARDPQTACEWQSMV 248
Query: 273 KYPYFFSKDFGASMVKMANIGVLTGQDGEIRKNCRVV 309
F A+M KMA L GQD +C V
Sbjct: 249 NNQPKIQNRFAATMSKMA----LLGQDKTKLIDCSDV 281
>pdb|3FKG|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 104/277 (37%), Gaps = 50/277 (18%)
Query: 46 LRLHFHDCFV-------KGCDGSVLLDDTSTTKGEKNAFPNRNSARGFEVIDAIKANLEK 98
LRL FHD G DGS++ DT T NA + E++ A K + K
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID-------EIVSAQKPFVAK 94
Query: 99 ACPATVSCTDILTLVAREAVF-LGGG---PFWAVPLGRRDGLTASESEANNLPSPFEPLQ 154
+S D + V GG PF+ LGR D + AS +P PF+ +
Sbjct: 95 H---NISAGDFIQFAGAVGVSNCPGGVRIPFF---LGRPDAVAASPDHL--VPEPFDSVD 146
Query: 155 NITAKFTARGLDLKDVVVLSGGHTIGFAQCLSFKNRLFDFSGSGKPDPTLDASLLQSLQS 214
+I A+ G +VV L H+I A K DP++ + S
Sbjct: 147 SILARMGDAGFSPVEVVWLLASHSIAAAD---------------KVDPSIPGTPFDSTPE 191
Query: 215 TCPSQADSDTKLVA--LDSVTTNKFDNIYFQNLVNKSGLLQSDQALMGDNRTAAMVQYYS 272
SQ +T+L NK + Q+ + LQSD L D +TA Q
Sbjct: 192 VFDSQFFIETQLKGRLFPGTADNKGEA---QSPLQGEIRLQSDHLLARDPQTACEWQSMV 248
Query: 273 KYPYFFSKDFGASMVKMANIGVLTGQDGEIRKNCRVV 309
F A+M KMA L GQD +C V
Sbjct: 249 NNQPKIQNRFAATMSKMA----LLGQDKTKLIDCSDV 281
>pdb|4G05|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 317
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 104/277 (37%), Gaps = 50/277 (18%)
Query: 46 LRLHFHDCFV-------KGCDGSVLLDDTSTTKGEKNAFPNRNSARGFEVIDAIKANLEK 98
LRL FHD G DGS++ DT T NA + E++ A K + K
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID-------EIVSAQKPFVAK 94
Query: 99 ACPATVSCTDILTLVAREAVF-LGGG---PFWAVPLGRRDGLTASESEANNLPSPFEPLQ 154
+S D + V GG PF+ LGR D + AS +P PF+ +
Sbjct: 95 H---NISAGDFIQFAGAVGVSNCPGGVRIPFF---LGRPDAVAASPDHL--VPGPFDSVD 146
Query: 155 NITAKFTARGLDLKDVVVLSGGHTIGFAQCLSFKNRLFDFSGSGKPDPTLDASLLQSLQS 214
+I A+ G +VV L H+I A K DP++ + S
Sbjct: 147 SILARMGDAGFSPVEVVWLLASHSIAAAD---------------KVDPSIPGTPFDSTPE 191
Query: 215 TCPSQADSDTKLVA--LDSVTTNKFDNIYFQNLVNKSGLLQSDQALMGDNRTAAMVQYYS 272
SQ +T+L NK + Q+ + LQSD L D +TA Q
Sbjct: 192 VFDSQFFIETQLKGRLFPGTADNKGEA---QSPLQGEIRLQSDHLLARDPQTACEWQSMV 248
Query: 273 KYPYFFSKDFGASMVKMANIGVLTGQDGEIRKNCRVV 309
F A+M KMA L GQD +C V
Sbjct: 249 NNQPKIQNRFAATMSKMA----LLGQDKTKLIDCSDV 281
>pdb|2BOQ|A Chain A, Crystal Structure Of Versatile Peroxidase
Length = 331
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 104/277 (37%), Gaps = 50/277 (18%)
Query: 46 LRLHFHDCFV-------KGCDGSVLLDDTSTTKGEKNAFPNRNSARGFEVIDAIKANLEK 98
LRL FHD G DGS++ DT T NA + E++ A K + K
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID-------EIVSAQKPFVAK 94
Query: 99 ACPATVSCTDILTLVAREAVF-LGGG---PFWAVPLGRRDGLTASESEANNLPSPFEPLQ 154
+S D + V GG PF+ LGR D + AS +P PF+ +
Sbjct: 95 H---NISAGDFIQFAGAVGVSNCPGGVRIPFF---LGRPDAVAASPDHL--VPEPFDSVD 146
Query: 155 NITAKFTARGLDLKDVVVLSGGHTIGFAQCLSFKNRLFDFSGSGKPDPTLDASLLQSLQS 214
+I A+ G +VV L H+I A K DP++ + S
Sbjct: 147 SILARMGDAGFSPVEVVWLLASHSIAAAD---------------KVDPSIPGTPFDSTPE 191
Query: 215 TCPSQADSDTKLVA--LDSVTTNKFDNIYFQNLVNKSGLLQSDQALMGDNRTAAMVQYYS 272
SQ +T+L NK + Q+ + LQSD L D +TA Q
Sbjct: 192 VFDSQFFIETQLKGRLFPGTADNKGEA---QSPLQGEIRLQSDHLLARDPQTACEWQSMV 248
Query: 273 KYPYFFSKDFGASMVKMANIGVLTGQDGEIRKNCRVV 309
F A+M KMA L GQD +C V
Sbjct: 249 NNQPKIQNRFAATMSKMA----LLGQDKTKLIDCSDV 281
>pdb|3FJW|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
pdb|3FJW|B Chain B, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 104/277 (37%), Gaps = 50/277 (18%)
Query: 46 LRLHFHDCFV-------KGCDGSVLLDDTSTTKGEKNAFPNRNSARGFEVIDAIKANLEK 98
LRL FHD G DGS++ DT T NA + E++ A K + K
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID-------EIVSAQKPFVAK 94
Query: 99 ACPATVSCTDILTLVAREAVF-LGGG---PFWAVPLGRRDGLTASESEANNLPSPFEPLQ 154
+S D + V GG PF+ LGR D + AS +P PF+ +
Sbjct: 95 H---NISAGDFIQFAGAVGVSNCPGGVRIPFF---LGRPDAVAASPDHL--VPEPFDSVD 146
Query: 155 NITAKFTARGLDLKDVVVLSGGHTIGFAQCLSFKNRLFDFSGSGKPDPTLDASLLQSLQS 214
+I A+ G +VV L H+I A K DP++ + S
Sbjct: 147 SILARMGDAGFSPVEVVWLLASHSIAAAD---------------KVDPSIPGTPFDSTPG 191
Query: 215 TCPSQADSDTKLVA--LDSVTTNKFDNIYFQNLVNKSGLLQSDQALMGDNRTAAMVQYYS 272
SQ +T+L NK + Q+ + LQSD L D +TA Q
Sbjct: 192 VFDSQFFIETQLKGRLFPGTADNKGEA---QSPLQGEIRLQSDHLLARDPQTACEWQSMV 248
Query: 273 KYPYFFSKDFGASMVKMANIGVLTGQDGEIRKNCRVV 309
F A+M KMA L GQD +C V
Sbjct: 249 NNQPKIQNRFAATMSKMA----LLGQDKTKLIDCSDV 281
>pdb|3FMU|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 104/277 (37%), Gaps = 50/277 (18%)
Query: 46 LRLHFHDCFV-------KGCDGSVLLDDTSTTKGEKNAFPNRNSARGFEVIDAIKANLEK 98
LRL FHD G DGS++ DT T NA + E++ A K + K
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID-------EIVSAQKPFVAK 94
Query: 99 ACPATVSCTDILTLVAREAVF-LGGG---PFWAVPLGRRDGLTASESEANNLPSPFEPLQ 154
+S D + V GG PF+ LGR D + AS +P PF+ +
Sbjct: 95 H---NISAGDFIQFAGAVGVSNCPGGVRIPFF---LGRPDAVAASPDHL--VPEPFDSVD 146
Query: 155 NITAKFTARGLDLKDVVVLSGGHTIGFAQCLSFKNRLFDFSGSGKPDPTLDASLLQSLQS 214
+I A+ G +VV L H+I A K DP++ + S
Sbjct: 147 SILARMGDAGFSPVEVVSLLASHSIAAAD---------------KVDPSIPGTPFDSTPG 191
Query: 215 TCPSQADSDTKLVA--LDSVTTNKFDNIYFQNLVNKSGLLQSDQALMGDNRTAAMVQYYS 272
SQ +T+L NK + Q+ + LQSD L D +TA Q
Sbjct: 192 VFDSQFFIETQLKGRLFPGTADNKGEA---QSPLQGEIRLQSDHLLARDPQTACEWQSMV 248
Query: 273 KYPYFFSKDFGASMVKMANIGVLTGQDGEIRKNCRVV 309
F A+M KMA L GQD +C V
Sbjct: 249 NNQPKIQNRFAATMSKMA----LLGQDKTKLIDCSDV 281
>pdb|3FM1|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 104/277 (37%), Gaps = 50/277 (18%)
Query: 46 LRLHFHDCFV-------KGCDGSVLLDDTSTTKGEKNAFPNRNSARGFEVIDAIKANLEK 98
LRL FHD G DGS++ DT T NA + E++ A K + K
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID-------EIVSAQKPFVAK 94
Query: 99 ACPATVSCTDILTLVAREAVF-LGGG---PFWAVPLGRRDGLTASESEANNLPSPFEPLQ 154
+S D + V GG PF+ LGR D + AS +P PF+ +
Sbjct: 95 H---NISAGDFIQFAGAVGVSNCPGGVRIPFF---LGRPDAVAASPDHL--VPEPFDSVD 146
Query: 155 NITAKFTARGLDLKDVVVLSGGHTIGFAQCLSFKNRLFDFSGSGKPDPTLDASLLQSLQS 214
+I A+ G +VV L H+I A K DP++ + S
Sbjct: 147 SILARMGDAGFSPVEVVWLLASHSIAAAD---------------KVDPSIPGTPFDSTPQ 191
Query: 215 TCPSQADSDTKLVA--LDSVTTNKFDNIYFQNLVNKSGLLQSDQALMGDNRTAAMVQYYS 272
SQ +T+L NK + Q+ + LQSD L D +TA Q
Sbjct: 192 VFDSQFFIETQLKGRLFPGTADNKGEA---QSPLQGEIRLQSDHLLARDPQTACEWQSMV 248
Query: 273 KYPYFFSKDFGASMVKMANIGVLTGQDGEIRKNCRVV 309
F A+M KMA L GQD +C V
Sbjct: 249 NNQPKIQNRFAATMSKMA----LLGQDKTKLIDCSDV 281
>pdb|4FCS|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 104/277 (37%), Gaps = 50/277 (18%)
Query: 46 LRLHFHDCFV-------KGCDGSVLLDDTSTTKGEKNAFPNRNSARGFEVIDAIKANLEK 98
LRL FHD G DGS++ DT T NA + E++ A K + K
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID-------EIVSAQKPFVAK 94
Query: 99 ACPATVSCTDILTLVAREAVF-LGGG---PFWAVPLGRRDGLTASESEANNLPSPFEPLQ 154
+S D + V GG PF+ LGR D + AS +P PF+ +
Sbjct: 95 H---NISAGDFIQFAGAVGVSNCPGGVRIPFF---LGRPDAVAASPDHL--VPEPFDSVD 146
Query: 155 NITAKFTARGLDLKDVVVLSGGHTIGFAQCLSFKNRLFDFSGSGKPDPTLDASLLQSLQS 214
+I A+ G +VV L H+I A + DP++ + S
Sbjct: 147 SILARMGDAGFSPVEVVWLLASHSIAAADGV---------------DPSIPGTPFDSTPE 191
Query: 215 TCPSQADSDTKLVA--LDSVTTNKFDNIYFQNLVNKSGLLQSDQALMGDNRTAAMVQYYS 272
SQ +T+L NK + Q+ + LQSD L D +TA Q
Sbjct: 192 VFDSQFFIETQLKGRLFPGTADNKGEA---QSPLQGEIRLQSDHLLARDPQTACEWQSMV 248
Query: 273 KYPYFFSKDFGASMVKMANIGVLTGQDGEIRKNCRVV 309
F A+M KMA L GQD +C V
Sbjct: 249 NNQPKIQNRFAATMSKMA----LLGQDKTKLIDCSDV 281
>pdb|4FCN|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 319
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 104/277 (37%), Gaps = 50/277 (18%)
Query: 46 LRLHFHDCFV-------KGCDGSVLLDDTSTTKGEKNAFPNRNSARGFEVIDAIKANLEK 98
LRL FHD G DGS++ DT T NA + E++ A K + K
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID-------EIVSAQKPFVAK 94
Query: 99 ACPATVSCTDILTLVAREAVF-LGGG---PFWAVPLGRRDGLTASESEANNLPSPFEPLQ 154
+S D + V GG PF+ LGR D + AS +P PF+ +
Sbjct: 95 H---NISAGDFIQFAGAVGVSNCPGGVRIPFF---LGRPDAVAASPDHL--VPGPFDSVD 146
Query: 155 NITAKFTARGLDLKDVVVLSGGHTIGFAQCLSFKNRLFDFSGSGKPDPTLDASLLQSLQS 214
+I A+ G +VV L H+I A + DP++ + S
Sbjct: 147 SILARMGDAGFSPVEVVWLLASHSIAAADGV---------------DPSIPGTPFDSTPE 191
Query: 215 TCPSQADSDTKLVA--LDSVTTNKFDNIYFQNLVNKSGLLQSDQALMGDNRTAAMVQYYS 272
SQ +T+L NK + Q+ + LQSD L D +TA Q
Sbjct: 192 VFDSQFFIETQLKGRLFPGTADNKGEA---QSPLQGEIRLQSDHLLARDPQTACEWQSMV 248
Query: 273 KYPYFFSKDFGASMVKMANIGVLTGQDGEIRKNCRVV 309
F A+M KMA L GQD +C V
Sbjct: 249 NNQPKIQNRFAATMSKMA----LLGQDKTKLIDCSDV 281
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 96/263 (36%), Gaps = 52/263 (19%)
Query: 38 ETRMAASLLRLHFHDC--FVKGCDGSVLLDDTSTTKGEKNAFPNRNSARGFEVIDAIKAN 95
E R A +LRL +H F KG T E N +++ +KA
Sbjct: 40 EKRCAPLMLRLAWHSAGTFDKGTKTGGPFG-TIKHPAELAHSANNGLDIAVRLLEPLKAE 98
Query: 96 LEKACPATVSCTDILTLVAREAVFLGGGPFWAVPLGRRDGLTASESEANNLPSPFEPLQN 155
+S D L AV + GGP GR D LP + +
Sbjct: 99 F-----PILSYADFYQLAGVVAVEVTGGPEVPFHPGRED--KPEPPPEGRLPDATKGSDH 151
Query: 156 ITAKF-TARGLDLKDVVVLSGGHTIGFAQCLSFKNRLFDFSGSGKPDPTLDASLLQSLQS 214
+ F A GL +D+V LSGGHTIG A K R F G +P +
Sbjct: 152 LRDVFGKAMGLTDQDIVALSGGHTIGAAH----KERS-GFEGPWTSNPLI---------- 196
Query: 215 TCPSQADSDTKLVALDSVTTNKFDNIYFQNLVN--KSGLLQ--SDQALMGDNRTAAMVQY 270
FDN YF L++ K GLLQ SD+AL+ D +V
Sbjct: 197 ----------------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDK 234
Query: 271 YSKYPYFFSKDFGASMVKMANIG 293
Y+ F D+ + K++ +G
Sbjct: 235 YAADEDAFFADYAEAHQKLSELG 257
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 96/263 (36%), Gaps = 52/263 (19%)
Query: 38 ETRMAASLLRLHFHDC--FVKGCDGSVLLDDTSTTKGEKNAFPNRNSARGFEVIDAIKAN 95
E R A +LRL +H F KG T E N +++ +KA
Sbjct: 28 EKRCAPLMLRLAWHSAGTFDKGTKTGGPFG-TIKHPAELAHSANNGLDIAVRLLEPLKAE 86
Query: 96 LEKACPATVSCTDILTLVAREAVFLGGGPFWAVPLGRRDGLTASESEANNLPSPFEPLQN 155
+S D L AV + GGP GR D LP + +
Sbjct: 87 F-----PILSYADFYQLAGVVAVEVTGGPEVPFHPGRED--KPEPPPEGRLPDATKGSDH 139
Query: 156 ITAKF-TARGLDLKDVVVLSGGHTIGFAQCLSFKNRLFDFSGSGKPDPTLDASLLQSLQS 214
+ F A GL +D+V LSGGHTIG A K R F G +P +
Sbjct: 140 LRDVFGKAMGLTDQDIVALSGGHTIGAAH----KERS-GFEGPWTSNPLI---------- 184
Query: 215 TCPSQADSDTKLVALDSVTTNKFDNIYFQNLVN--KSGLLQ--SDQALMGDNRTAAMVQY 270
FDN YF L++ K GLLQ SD+AL+ D +V
Sbjct: 185 ----------------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDK 222
Query: 271 YSKYPYFFSKDFGASMVKMANIG 293
Y+ F D+ + K++ +G
Sbjct: 223 YAADEDAFFADYAEAHQKLSELG 245
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 96/263 (36%), Gaps = 52/263 (19%)
Query: 38 ETRMAASLLRLHFHDC--FVKGCDGSVLLDDTSTTKGEKNAFPNRNSARGFEVIDAIKAN 95
E R A +LRL +H F KG T E N +++ +KA
Sbjct: 40 EKRCAPLMLRLAWHSAGTFDKGTKTGGPFG-TIKHPAELAHSANNGLDIAVRLLEPLKAE 98
Query: 96 LEKACPATVSCTDILTLVAREAVFLGGGPFWAVPLGRRDGLTASESEANNLPSPFEPLQN 155
+S D L AV + GGP GR D LP + +
Sbjct: 99 F-----PILSYADFYQLAGVVAVEVTGGPEVPFHPGRED--KPEPPPEGRLPDATKGSDH 151
Query: 156 ITAKF-TARGLDLKDVVVLSGGHTIGFAQCLSFKNRLFDFSGSGKPDPTLDASLLQSLQS 214
+ F A GL +D+V LSGGHTIG A K R F G +P +
Sbjct: 152 LRDVFGKAMGLTDQDIVALSGGHTIGAAH----KERS-GFEGPWTSNPLI---------- 196
Query: 215 TCPSQADSDTKLVALDSVTTNKFDNIYFQNLVN--KSGLLQ--SDQALMGDNRTAAMVQY 270
FDN YF L++ K GLLQ SD+AL+ D +V
Sbjct: 197 ----------------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDK 234
Query: 271 YSKYPYFFSKDFGASMVKMANIG 293
Y+ F D+ + K++ +G
Sbjct: 235 YAADEDAFFADYAEAHQKLSELG 257
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 75/195 (38%), Gaps = 44/195 (22%)
Query: 104 VSCTDILTLVAREAVFLGGGPFWAVPLGRRDGLTASESEANNLPSPFEPLQNITAKF-TA 162
+S D L AV + GGP GR D LP + ++ F A
Sbjct: 102 LSYADFYQLAGVVAVEVTGGPEVPFHPGRED--KPEPPPEGRLPDATKGSDHLRDVFGKA 159
Query: 163 RGLDLKDVVVLSGGHTIGFAQCLSFKNRLFDFSGSGKPDPTLDASLLQSLQSTCPSQADS 222
GL +D+V LSGGHTIG A K R F G +P +
Sbjct: 160 MGLTDQDIVALSGGHTIGAAH----KERS-GFEGPWTSNPLI------------------ 196
Query: 223 DTKLVALDSVTTNKFDNIYFQNLVN--KSGLLQ--SDQALMGDNRTAAMVQYYSKYPYFF 278
FDN YF L++ K GLLQ SD+AL+ D +V Y+ F
Sbjct: 197 --------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAF 242
Query: 279 SKDFGASMVKMANIG 293
D+ + K++ +G
Sbjct: 243 FADYAEAHQKLSELG 257
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 94/263 (35%), Gaps = 52/263 (19%)
Query: 38 ETRMAASLLRLHFHDC--FVKGCDGSVLLDDTSTTKGEKNAFPNRNSARGFEVIDAIKAN 95
E R A +LRL +H F KG T E N +++ +KA
Sbjct: 40 EKRCAPLMLRLAWHSAGTFDKGTKTGGPFG-TIKHPAELAHSANNGLDIAVRLLEPLKAE 98
Query: 96 LEKACPATVSCTDILTLVAREAVFLGGGPFWAVPLGRRDGLTASESEANNLPSPFEPLQN 155
+S D L AV + GGP GR D LP + +
Sbjct: 99 F-----PILSYADFYQLAGVVAVEVTGGPEVPFHPGRED--KPEPPPEGRLPDATKGSDH 151
Query: 156 ITAKF-TARGLDLKDVVVLSGGHTIGFAQCLSFKNRLFDFSGSGKPDPTLDASLLQSLQS 214
+ F A GL +D+V LSGGHTIG A F G +P +
Sbjct: 152 LRDVFGKAMGLTDQDIVALSGGHTIGAAH-----KEASGFEGPWTSNPLI---------- 196
Query: 215 TCPSQADSDTKLVALDSVTTNKFDNIYFQNLVN--KSGLLQ--SDQALMGDNRTAAMVQY 270
FDN YF L++ K GLLQ SD+AL+ D +V
Sbjct: 197 ----------------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDK 234
Query: 271 YSKYPYFFSKDFGASMVKMANIG 293
Y+ F D+ + K++ +G
Sbjct: 235 YAADEDAFFADYAEAHQKLSELG 257
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 75/195 (38%), Gaps = 44/195 (22%)
Query: 104 VSCTDILTLVAREAVFLGGGPFWAVPLGRRDGLTASESEANNLPSPFEPLQNITAKF-TA 162
+S D L AV + GGP GR D LP + ++ F A
Sbjct: 102 LSYADFYQLAGVVAVEVTGGPEVPFHPGRED--KPEPPPEGRLPDATKGSDHLRDVFGKA 159
Query: 163 RGLDLKDVVVLSGGHTIGFAQCLSFKNRLFDFSGSGKPDPTLDASLLQSLQSTCPSQADS 222
GL +D+V LSGGHTIG A K R F G +P +
Sbjct: 160 MGLTDQDIVALSGGHTIGAAH----KERS-GFEGPWTSNPLI------------------ 196
Query: 223 DTKLVALDSVTTNKFDNIYFQNLVN--KSGLLQ--SDQALMGDNRTAAMVQYYSKYPYFF 278
FDN YF L++ K GLLQ SD+AL+ D +V Y+ F
Sbjct: 197 --------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAF 242
Query: 279 SKDFGASMVKMANIG 293
D+ + K++ +G
Sbjct: 243 FADYAEAHQKLSELG 257
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 75/195 (38%), Gaps = 44/195 (22%)
Query: 104 VSCTDILTLVAREAVFLGGGPFWAVPLGRRDGLTASESEANNLPSPFEPLQNITAKF-TA 162
+S D L AV + GGP GR D LP + ++ F A
Sbjct: 90 LSYADFYQLAGVVAVEVTGGPEVPFHPGRED--KPEPPPEGRLPDATKGSDHLRDVFGKA 147
Query: 163 RGLDLKDVVVLSGGHTIGFAQCLSFKNRLFDFSGSGKPDPTLDASLLQSLQSTCPSQADS 222
GL +D+V LSGGHTIG A K R F G +P +
Sbjct: 148 MGLTDQDIVALSGGHTIGAAH----KERS-GFEGPWTSNPLI------------------ 184
Query: 223 DTKLVALDSVTTNKFDNIYFQNLVN--KSGLLQ--SDQALMGDNRTAAMVQYYSKYPYFF 278
FDN YF L++ K GLLQ SD+AL+ D +V Y+ F
Sbjct: 185 --------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAF 230
Query: 279 SKDFGASMVKMANIG 293
D+ + K++ +G
Sbjct: 231 FADYAEAHQKLSELG 245
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 75/195 (38%), Gaps = 44/195 (22%)
Query: 104 VSCTDILTLVAREAVFLGGGPFWAVPLGRRDGLTASESEANNLPSPFEPLQNITAKF-TA 162
+S D L AV + GGP GR D LP + ++ F A
Sbjct: 90 LSYADFYQLAGVVAVEVTGGPEVPFHPGRED--KPEPPPEGRLPDATKGSDHLRDVFGKA 147
Query: 163 RGLDLKDVVVLSGGHTIGFAQCLSFKNRLFDFSGSGKPDPTLDASLLQSLQSTCPSQADS 222
GL +D+V LSGGHTIG A K R F G +P +
Sbjct: 148 MGLTDQDIVALSGGHTIGAAH----KERS-GFEGPWTSNPLI------------------ 184
Query: 223 DTKLVALDSVTTNKFDNIYFQNLVN--KSGLLQ--SDQALMGDNRTAAMVQYYSKYPYFF 278
FDN YF L++ K GLLQ SD+AL+ D +V Y+ F
Sbjct: 185 --------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAF 230
Query: 279 SKDFGASMVKMANIG 293
D+ + K++ +G
Sbjct: 231 FADYAEAHQKLSELG 245
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 75/195 (38%), Gaps = 44/195 (22%)
Query: 104 VSCTDILTLVAREAVFLGGGPFWAVPLGRRDGLTASESEANNLPSPFEPLQNITAKF-TA 162
+S D L AV + GGP GR D LP + ++ F A
Sbjct: 102 LSYADFYQLAGVVAVEVTGGPEVPFHPGRED--KPEPPPEGRLPDATKGSDHLRDVFGKA 159
Query: 163 RGLDLKDVVVLSGGHTIGFAQCLSFKNRLFDFSGSGKPDPTLDASLLQSLQSTCPSQADS 222
GL +D+V LSGGHTIG A K R F G +P +
Sbjct: 160 MGLTDQDIVALSGGHTIGAAH----KERS-GFEGPWTSNPLI------------------ 196
Query: 223 DTKLVALDSVTTNKFDNIYFQNLVN--KSGLLQ--SDQALMGDNRTAAMVQYYSKYPYFF 278
FDN YF L++ K GLLQ SD+AL+ D +V Y+ F
Sbjct: 197 --------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAF 242
Query: 279 SKDFGASMVKMANIG 293
D+ + K++ +G
Sbjct: 243 FADYAEAHQKLSELG 257
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 75/195 (38%), Gaps = 44/195 (22%)
Query: 104 VSCTDILTLVAREAVFLGGGPFWAVPLGRRDGLTASESEANNLPSPFEPLQNITAKF-TA 162
+S D L AV + GGP GR D LP + ++ F A
Sbjct: 90 LSYADFYQLAGVVAVEVTGGPEVPFHPGRED--KPEPPPEGRLPDATKGSDHLRDVFGKA 147
Query: 163 RGLDLKDVVVLSGGHTIGFAQCLSFKNRLFDFSGSGKPDPTLDASLLQSLQSTCPSQADS 222
GL +D+V LSGGHTIG A K R F G +P +
Sbjct: 148 MGLTDQDIVALSGGHTIGAAH----KERS-GFEGPWTSNPLI------------------ 184
Query: 223 DTKLVALDSVTTNKFDNIYFQNLVN--KSGLLQ--SDQALMGDNRTAAMVQYYSKYPYFF 278
FDN YF L++ K GLLQ SD+AL+ D +V Y+ F
Sbjct: 185 --------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAF 230
Query: 279 SKDFGASMVKMANIG 293
D+ + K++ +G
Sbjct: 231 FADYAEAHQKLSELG 245
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 75/195 (38%), Gaps = 44/195 (22%)
Query: 104 VSCTDILTLVAREAVFLGGGPFWAVPLGRRDGLTASESEANNLPSPFEPLQNITAKF-TA 162
+S D L AV + GGP GR D LP + ++ F A
Sbjct: 102 LSYADFYQLAGVVAVEVTGGPEVPFHPGRED--KPEPPPEGRLPDATKGSDHLRDVFGKA 159
Query: 163 RGLDLKDVVVLSGGHTIGFAQCLSFKNRLFDFSGSGKPDPTLDASLLQSLQSTCPSQADS 222
GL +D+V LSGGHTIG A K R F G +P +
Sbjct: 160 MGLTDQDIVALSGGHTIGAAH----KERS-GFEGPWTSNPLI------------------ 196
Query: 223 DTKLVALDSVTTNKFDNIYFQNLVN--KSGLLQ--SDQALMGDNRTAAMVQYYSKYPYFF 278
FDN YF L++ K GLLQ SD+AL+ D +V Y+ F
Sbjct: 197 --------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAF 242
Query: 279 SKDFGASMVKMANIG 293
D+ + K++ +G
Sbjct: 243 FADYAEAHQKLSELG 257
>pdb|4FEF|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 103/277 (37%), Gaps = 50/277 (18%)
Query: 46 LRLHFHDCFV-------KGCDGSVLLDDTSTTKGEKNAFPNRNSARGFEVIDAIKANLEK 98
LRL FHD G DGS++ DT T NA + E++ A K + K
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID-------EIVSAQKPFVAK 94
Query: 99 ACPATVSCTDILTLVAREAVF-LGGG---PFWAVPLGRRDGLTASESEANNLPSPFEPLQ 154
+S D + V GG PF+ LGR D + AS +P F+ +
Sbjct: 95 ---HNISAGDFIQFAGAVGVSNCPGGVRIPFF---LGRPDAVAASPDHL--VPEGFDSVD 146
Query: 155 NITAKFTARGLDLKDVVVLSGGHTIGFAQCLSFKNRLFDFSGSGKPDPTLDASLLQSLQS 214
+I A+ G +VV L H+I A K DP++ + S
Sbjct: 147 SILARMGDAGFSPVEVVWLLASHSIAAAD---------------KVDPSIPGTPFDSTPE 191
Query: 215 TCPSQADSDTKLVA--LDSVTTNKFDNIYFQNLVNKSGLLQSDQALMGDNRTAAMVQYYS 272
SQ +T+L NK + Q+ + LQSD L D +TA Q
Sbjct: 192 VFDSQFFIETQLKGRLFPGTADNKGEA---QSPLQGEIRLQSDHLLARDPQTACEWQSMV 248
Query: 273 KYPYFFSKDFGASMVKMANIGVLTGQDGEIRKNCRVV 309
F A+M KMA L GQD +C V
Sbjct: 249 NNQPKIQNRFAATMSKMA----LLGQDKTKLIDCSDV 281
>pdb|3FM6|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 103/277 (37%), Gaps = 50/277 (18%)
Query: 46 LRLHFHDCFV-------KGCDGSVLLDDTSTTKGEKNAFPNRNSARGFEVIDAIKANLEK 98
LRL FHD G DGS++ DT T NA + E++ A K + K
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID-------EIVSAQKPFVAK 94
Query: 99 ACPATVSCTDILTLVAREAVF-LGGG---PFWAVPLGRRDGLTASESEANNLPSPFEPLQ 154
+S D + V GG PF+ LGR D + AS +P P + +
Sbjct: 95 H---NISAGDFIQFAGAVGVSNCPGGVRIPFF---LGRPDAVAASPDHL--VPEPQDSVD 146
Query: 155 NITAKFTARGLDLKDVVVLSGGHTIGFAQCLSFKNRLFDFSGSGKPDPTLDASLLQSLQS 214
+I A+ G +VV L H+I A K DP++ + S
Sbjct: 147 SILARMGDAGFSPVEVVWLLASHSIAAAD---------------KVDPSIPGTPFDSTPG 191
Query: 215 TCPSQADSDTKLVA--LDSVTTNKFDNIYFQNLVNKSGLLQSDQALMGDNRTAAMVQYYS 272
SQ +T+L NK + Q+ + LQSD L D +TA Q
Sbjct: 192 VFDSQFFIETQLKGRLFPGTADNKGEA---QSPLQGEIRLQSDHLLARDPQTACEWQSMV 248
Query: 273 KYPYFFSKDFGASMVKMANIGVLTGQDGEIRKNCRVV 309
F A+M KMA L GQD +C V
Sbjct: 249 NNQPKIQNRFAATMSKMA----LLGQDKTKLIDCSDV 281
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 94/231 (40%), Gaps = 27/231 (11%)
Query: 71 KGEKNAFPNRNSARGFEVIDAIKANLEKACPATVSCTDILTLVAREAVFLGGGPFWAVPL 130
K E N N GF+ ++ I K P +S D+ +L AV GP
Sbjct: 74 KKEFNDPSNAGLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRC 128
Query: 131 GRRDGLTASESEANNLPSPFEPLQNITAKFTARGLDLKDVVVLSGGHTIGFAQCLSFKNR 190
GR D + + LP + + F ++ ++VV L G HT+G KN
Sbjct: 129 GRVDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHL---KNS 185
Query: 191 LFDFSGSGKPDPTLDASLLQSLQSTCPSQADSDTKLVALDSVTTNKFDNIYFQNLVNKSG 250
++ + P+ D S +L + D KL D+ ++D +KSG
Sbjct: 186 GYEGPWTANPN-VFDNSFYLNL-------LNEDWKLEKNDA-NNEQWD--------SKSG 228
Query: 251 --LLQSDQALMGDNRTAAMVQYYSKYPYFFSKDFGASMVKMANIGVLTGQD 299
+L +D +L+ D + ++V+ Y+ F KDF + K+ G+ +D
Sbjct: 229 YMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKD 279
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 88/248 (35%), Gaps = 61/248 (24%)
Query: 71 KGEKNAFPNRNSARGFEVIDAIKANLEKACPATVSCTDILTLVAREAVFLGGGPFWAVPL 130
K E N N GF+ ++ I K P +S D+ +L AV GP
Sbjct: 74 KKEFNDPSNAGLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRC 128
Query: 131 GRRDGLTASESEANNLPSPFEPLQNITAKFTARGLDLKDVVVLSGGHTIGFAQCLSFKNR 190
GR D + + LP + + F ++ ++VV LSG HT+G
Sbjct: 129 GRVDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALSGAHTLGKTHL------ 182
Query: 191 LFDFSGSGKPDPTLDASLLQSLQSTCPSQADSDTKLVALDSVTTNKFDNIYFQNLVN--- 247
SG P + N FDN ++ NL+N
Sbjct: 183 ----KNSGYEGPW---------------------------TANNNVFDNSFYLNLLNEDW 211
Query: 248 --------------KSGLLQ--SDQALMGDNRTAAMVQYYSKYPYFFSKDFGASMVKMAN 291
KSG LQ +D +L+ D + ++V+ Y+ F KDF + K+
Sbjct: 212 KLEKNDANNEQWDSKSGYLQLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLE 271
Query: 292 IGVLTGQD 299
G+ +D
Sbjct: 272 NGITFPKD 279
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 87/248 (35%), Gaps = 61/248 (24%)
Query: 71 KGEKNAFPNRNSARGFEVIDAIKANLEKACPATVSCTDILTLVAREAVFLGGGPFWAVPL 130
K E N N GF+ ++ I K P +S D+ +L AV GP
Sbjct: 74 KKEFNDPSNAGLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRC 128
Query: 131 GRRDGLTASESEANNLPSPFEPLQNITAKFTARGLDLKDVVVLSGGHTIGFAQCLSFKNR 190
GR D + + LP + + F ++ ++VV L G HT+G
Sbjct: 129 GRVDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHL------ 182
Query: 191 LFDFSGSGKPDPTLDASLLQSLQSTCPSQADSDTKLVALDSVTTNKFDNIYFQNLVN--- 247
SG P + N FDN ++ NL+N
Sbjct: 183 ----KNSGYEGPW---------------------------TANNNVFDNSFYLNLLNEDW 211
Query: 248 --------------KSGLLQ--SDQALMGDNRTAAMVQYYSKYPYFFSKDFGASMVKMAN 291
KSG LQ +D +L+ D + ++V+ Y+ F KDF + K+
Sbjct: 212 KLEKNDANNEQWDSKSGYLQLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLE 271
Query: 292 IGVLTGQD 299
G+ +D
Sbjct: 272 NGITFPKD 279
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 90/248 (36%), Gaps = 61/248 (24%)
Query: 71 KGEKNAFPNRNSARGFEVIDAIKANLEKACPATVSCTDILTLVAREAVFLGGGPFWAVPL 130
K E N N GF+ ++ I K P +S D+ +L AV GP
Sbjct: 74 KKEFNDPSNAGLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRC 128
Query: 131 GRRDGLTASESEANNLPSPFEPLQNITAKFTARGLDLKDVVVLSGGHTIGFAQCLSFKNR 190
GR D + + LP + + F ++ ++VV L G HT+G
Sbjct: 129 GRVDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLG---------- 178
Query: 191 LFDFSGSGKPDPTLDASLLQSLQSTCPSQADSDTKLVALDSVTTNKFDNIYFQNLVN--- 247
+ L++ P A T N FDN ++ NL+N
Sbjct: 179 ---------------KTHLKNSGYEGPWDA------------TNNVFDNSFYLNLLNEDW 211
Query: 248 --------------KSG--LLQSDQALMGDNRTAAMVQYYSKYPYFFSKDFGASMVKMAN 291
KSG +L +D +L+ D + ++V+ Y+ F KDF + K+
Sbjct: 212 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLE 271
Query: 292 IGVLTGQD 299
G+ +D
Sbjct: 272 NGITFPKD 279
>pdb|3LW5|H Chain H, Improved Model Of Plant Photosystem I
Length = 69
Score = 34.3 bits (77), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 6/47 (12%)
Query: 140 ESEANNLPSPFEPLQN-----ITAKFTARGLDLKDVVVLSGGHTIGF 181
+S ++ PSP+ PLQ+ A FT RGL LK ++L GG T+ +
Sbjct: 13 DSYGSDAPSPYNPLQSKLFETFAAPFTKRGLLLK-FLILGGGSTLAY 58
>pdb|1MN1|A Chain A, Manganese Peroxidase Substrate Binding Site Mutant D179n
Length = 357
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 69/280 (24%), Positives = 104/280 (37%), Gaps = 64/280 (22%)
Query: 42 AASLLRLHFHDCFV----------KGCDGSVLLDDTSTTKGEKNAFPNRNSARGFE-VID 90
A ++RL FHD G DGS+LL T PN ++ G + ++
Sbjct: 37 AHEVIRLTFHDAIAISRSQGPKAGGGADGSMLLFPTVE--------PNFSANNGIDDSVN 88
Query: 91 AIKANLEKACPATVSCTDILTLVAREAV----------FLGGGPFWAVPLGRRDGLTASE 140
+ ++K T+S D++ A+ FL G P + DGL
Sbjct: 89 NLIPFMQKH--NTISAADLVQFAGAVALSNCPGAPRLEFLAGRPNKTI--AAVDGL---- 140
Query: 141 SEANNLPSPFEPLQNITAKFT-ARGLDLKDVVVLSGGHTIGFAQCLSFKNRLFDFSGSGK 199
+P P + + I +F A G +VV L H++ A K
Sbjct: 141 -----IPEPQDSVTKILQRFEDAGGFTPFEVVSLLASHSVARAN---------------K 180
Query: 200 PDPTLDASLLQSLQSTCPSQADSDTKLVALDSVTTNKFDNIYFQNLVNKSG------LLQ 253
D T+DA+ S T +Q + L + + L SG LQ
Sbjct: 181 VDQTIDAAPFDSTPFTFDTQVFLEVLLKGVGFPGSANNTGEVASPLPLGSGSDTGEMRLQ 240
Query: 254 SDQALMGDNRTAAMVQYYSKYPYFFSKDFGASMVKMANIG 293
SD AL D RTA + Q + F + F A+M K+A +G
Sbjct: 241 SDFALAHDPRTACIWQGFVNEQAFMAASFRAAMSKLAVLG 280
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 87/248 (35%), Gaps = 61/248 (24%)
Query: 71 KGEKNAFPNRNSARGFEVIDAIKANLEKACPATVSCTDILTLVAREAVFLGGGPFWAVPL 130
K E N N GF+ ++ I K P +S D+ +L AV GP
Sbjct: 74 KKEFNDPSNAGLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRC 128
Query: 131 GRRDGLTASESEANNLPSPFEPLQNITAKFTARGLDLKDVVVLSGGHTIGFAQCLSFKNR 190
GR D + + LP + + F ++ ++VV L G HT+G
Sbjct: 129 GRVDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHL------ 182
Query: 191 LFDFSGSGKPDPTLDASLLQSLQSTCPSQADSDTKLVALDSVTTNKFDNIYFQNLVN--- 247
SG P + N FDN ++ NL+N
Sbjct: 183 ----KNSGYEGPW---------------------------TANNNVFDNSFYLNLLNEDW 211
Query: 248 --------------KSG--LLQSDQALMGDNRTAAMVQYYSKYPYFFSKDFGASMVKMAN 291
KSG +L +D +L+ D + ++V+ Y+ F KDF + K+
Sbjct: 212 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLE 271
Query: 292 IGVLTGQD 299
G+ +D
Sbjct: 272 NGITFPKD 279
>pdb|1MN2|A Chain A, Manganese Peroxidase Substrate Binding Site Mutant E35q,
D179n
Length = 357
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 69/280 (24%), Positives = 104/280 (37%), Gaps = 64/280 (22%)
Query: 42 AASLLRLHFHDCFV----------KGCDGSVLLDDTSTTKGEKNAFPNRNSARGFE-VID 90
A ++RL FHD G DGS+LL T PN ++ G + ++
Sbjct: 37 AHEVIRLTFHDAIAISRSQGPKAGGGADGSMLLFPTVE--------PNFSANNGIDDSVN 88
Query: 91 AIKANLEKACPATVSCTDILTLVAREAV----------FLGGGPFWAVPLGRRDGLTASE 140
+ ++K T+S D++ A+ FL G P + DGL
Sbjct: 89 NLIPFMQKH--NTISAADLVQFAGAVALSNCPGAPRLEFLAGRPNKTI--AAVDGL---- 140
Query: 141 SEANNLPSPFEPLQNITAKFT-ARGLDLKDVVVLSGGHTIGFAQCLSFKNRLFDFSGSGK 199
+P P + + I +F A G +VV L H++ A K
Sbjct: 141 -----IPEPQDSVTKILQRFEDAGGFTPFEVVSLLASHSVARAN---------------K 180
Query: 200 PDPTLDASLLQSLQSTCPSQADSDTKLVALDSVTTNKFDNIYFQNLVNKSG------LLQ 253
D T+DA+ S T +Q + L + + L SG LQ
Sbjct: 181 VDQTIDAAPFDSTPFTFDTQVFLEVLLKGVGFPGSANNTGEVASPLPLGSGSDTGEMRLQ 240
Query: 254 SDQALMGDNRTAAMVQYYSKYPYFFSKDFGASMVKMANIG 293
SD AL D RTA + Q + F + F A+M K+A +G
Sbjct: 241 SDFALAHDPRTACIWQGFVNEQAFMAASFRAAMSKLAVLG 280
>pdb|1YYD|A Chain A, High Resolution Crystal Structure Of Manganese Peroxidase
pdb|1YYG|A Chain A, Manganese Peroxidase Complexed With Cd(Ii) Inhibitor
pdb|1YZP|A Chain A, Substrate-free Manganese Peroxidase
pdb|1YZR|A Chain A, Manganese Peroxidase-Sm(Iii) Complex
pdb|1MNP|A Chain A, Manganese Peroxidase
pdb|3M5Q|A Chain A, 0.93 A Structure Of Manganese-Bound Manganese Peroxidase
pdb|3M8M|A Chain A, 1.05 A Structure Of Manganese-Free Manganese Peroxidase
Length = 357
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 69/280 (24%), Positives = 104/280 (37%), Gaps = 64/280 (22%)
Query: 42 AASLLRLHFHDCFV----------KGCDGSVLLDDTSTTKGEKNAFPNRNSARGFE-VID 90
A ++RL FHD G DGS+LL T PN ++ G + ++
Sbjct: 37 AHEVIRLTFHDAIAISRSQGPKAGGGADGSMLLFPTVE--------PNFSANNGIDDSVN 88
Query: 91 AIKANLEKACPATVSCTDILTLVAREAV----------FLGGGPFWAVPLGRRDGLTASE 140
+ ++K T+S D++ A+ FL G P + DGL
Sbjct: 89 NLIPFMQKH--NTISAADLVQFAGAVALSNCPGAPRLEFLAGRPNKTI--AAVDGL---- 140
Query: 141 SEANNLPSPFEPLQNITAKFT-ARGLDLKDVVVLSGGHTIGFAQCLSFKNRLFDFSGSGK 199
+P P + + I +F A G +VV L H++ A K
Sbjct: 141 -----IPEPQDSVTKILQRFEDAGGFTPFEVVSLLASHSVARAD---------------K 180
Query: 200 PDPTLDASLLQSLQSTCPSQADSDTKLVALDSVTTNKFDNIYFQNLVNKSG------LLQ 253
D T+DA+ S T +Q + L + + L SG LQ
Sbjct: 181 VDQTIDAAPFDSTPFTFDTQVFLEVLLKGVGFPGSANNTGEVASPLPLGSGSDTGEMRLQ 240
Query: 254 SDQALMGDNRTAAMVQYYSKYPYFFSKDFGASMVKMANIG 293
SD AL D RTA + Q + F + F A+M K+A +G
Sbjct: 241 SDFALAHDPRTACIWQGFVNEQAFMAASFRAAMSKLAVLG 280
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 92/235 (39%), Gaps = 27/235 (11%)
Query: 67 TSTTKGEKNAFPNRNSARGFEVIDAIKANLEKACPATVSCTDILTLVAREAVFLGGGPFW 126
T K E N N GF+ ++ I K P +S D+ +L AV GP
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 121
Query: 127 AVPLGRRDGLTASESEANNLPSPFEPLQNITAKFTARGLDLKDVVVLSGGHTIGFAQCLS 186
GR D + + LP + + F ++ ++VV L G H +G
Sbjct: 122 PWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL-- 179
Query: 187 FKNRLFDFSGSGKPDPTLDASLLQSLQSTCPSQADSDTKLVALDSVTTNKFDNIYFQNLV 246
KN ++ G + + L L + D KL D+ ++D
Sbjct: 180 -KNSGYEGPGGAANNVFTNEFYLNLL--------NEDWKLEKNDA-NNEQWD-------- 221
Query: 247 NKSG--LLQSDQALMGDNRTAAMVQYYSKYPYFFSKDFGASMVKMANIGVLTGQD 299
+KSG +L +D +L+ D + ++V+ Y+ F KDF + K+ G+ +D
Sbjct: 222 SKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEDGITFPKD 276
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 92/235 (39%), Gaps = 27/235 (11%)
Query: 67 TSTTKGEKNAFPNRNSARGFEVIDAIKANLEKACPATVSCTDILTLVAREAVFLGGGPFW 126
T K E N N GF+ ++ I K P +S D+ +L AV GP
Sbjct: 68 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 122
Query: 127 AVPLGRRDGLTASESEANNLPSPFEPLQNITAKFTARGLDLKDVVVLSGGHTIGFAQCLS 186
GR D + + LP + + F ++ ++VV L G H +G
Sbjct: 123 PWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL-- 180
Query: 187 FKNRLFDFSGSGKPDPTLDASLLQSLQSTCPSQADSDTKLVALDSVTTNKFDNIYFQNLV 246
KN ++ G + + L L + D KL D+ ++D
Sbjct: 181 -KNSGYEGPGGAANNVFTNEFYLNLL--------NEDWKLEKNDA-NNEQWD-------- 222
Query: 247 NKSG--LLQSDQALMGDNRTAAMVQYYSKYPYFFSKDFGASMVKMANIGVLTGQD 299
+KSG +L +D +L+ D + ++V+ Y+ F KDF + K+ G+ +D
Sbjct: 223 SKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEDGITFPKD 277
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 92/235 (39%), Gaps = 27/235 (11%)
Query: 67 TSTTKGEKNAFPNRNSARGFEVIDAIKANLEKACPATVSCTDILTLVAREAVFLGGGPFW 126
T K E N N GF+ ++ I K P +S D+ +L AV GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 124
Query: 127 AVPLGRRDGLTASESEANNLPSPFEPLQNITAKFTARGLDLKDVVVLSGGHTIGFAQCLS 186
GR D + + LP + + F ++ ++VV L G H +G
Sbjct: 125 PWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL-- 182
Query: 187 FKNRLFDFSGSGKPDPTLDASLLQSLQSTCPSQADSDTKLVALDSVTTNKFDNIYFQNLV 246
KN ++ G + + L L + D KL D+ ++D
Sbjct: 183 -KNSGYEGPGGAANNVFTNEFYLNLL--------NEDWKLEKNDA-NNEQWD-------- 224
Query: 247 NKSG--LLQSDQALMGDNRTAAMVQYYSKYPYFFSKDFGASMVKMANIGVLTGQD 299
+KSG +L +D +L+ D + ++V+ Y+ F KDF + K+ G+ +D
Sbjct: 225 SKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEDGITFPKD 279
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 92/235 (39%), Gaps = 27/235 (11%)
Query: 67 TSTTKGEKNAFPNRNSARGFEVIDAIKANLEKACPATVSCTDILTLVAREAVFLGGGPFW 126
T K E N N GF+ ++ I K P +S D+ +L AV GP
Sbjct: 72 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKI 126
Query: 127 AVPLGRRDGLTASESEANNLPSPFEPLQNITAKFTARGLDLKDVVVLSGGHTIGFAQCLS 186
GR D + + LP + + F ++ ++VV L G H +G
Sbjct: 127 PWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL-- 184
Query: 187 FKNRLFDFSGSGKPDPTLDASLLQSLQSTCPSQADSDTKLVALDSVTTNKFDNIYFQNLV 246
KN ++ G + + L L + D KL D+ ++D
Sbjct: 185 -KNSGYEGPGGAANNVFTNEFYLNLL--------NEDWKLEKNDA-NNEQWD-------- 226
Query: 247 NKSG--LLQSDQALMGDNRTAAMVQYYSKYPYFFSKDFGASMVKMANIGVLTGQD 299
+KSG +L +D +L+ D + ++V+ Y+ F KDF + K+ G+ +D
Sbjct: 227 SKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKD 281
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 92/235 (39%), Gaps = 27/235 (11%)
Query: 67 TSTTKGEKNAFPNRNSARGFEVIDAIKANLEKACPATVSCTDILTLVAREAVFLGGGPFW 126
T K E N N GF+ ++ I K P +S D+ +L AV GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 124
Query: 127 AVPLGRRDGLTASESEANNLPSPFEPLQNITAKFTARGLDLKDVVVLSGGHTIGFAQCLS 186
GR D + + LP + + F ++ ++VV L G H +G
Sbjct: 125 PWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL-- 182
Query: 187 FKNRLFDFSGSGKPDPTLDASLLQSLQSTCPSQADSDTKLVALDSVTTNKFDNIYFQNLV 246
KN ++ G + + L L + D KL D+ ++D
Sbjct: 183 -KNSGYEGPGGAANNVFTNEFYLNLL--------NEDWKLEKNDA-NNEQWD-------- 224
Query: 247 NKSG--LLQSDQALMGDNRTAAMVQYYSKYPYFFSKDFGASMVKMANIGVLTGQD 299
+KSG +L +D +L+ D + ++V+ Y+ F KDF + K+ G+ +D
Sbjct: 225 SKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKD 279
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 92/235 (39%), Gaps = 29/235 (12%)
Query: 67 TSTTKGEKNAFPNRNSARGFEVIDAIKANLEKACPATVSCTDILTLVAREAVFLGGGPFW 126
T K E N N GF+ ++ I K P +S D+ +L AV GP
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 121
Query: 127 AVPLGRRDGLTASESEANNLPSPFEPLQNITAKFTARGLDLKDVVVLSGGHTIGFAQCLS 186
GR D + + LP + + F ++ ++VV L G H +G
Sbjct: 122 PWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL-- 179
Query: 187 FKNRLFDFSGSGKPDPTLDASLLQSLQSTCPSQADSDTKLVALDSVTTNKFDNIYFQNLV 246
KN + G G + + L L + D KL D+ ++D
Sbjct: 180 -KNS--GYEGGGANNVFTNEFYLNLL--------NEDWKLEKNDA-NNEQWD-------- 219
Query: 247 NKSG--LLQSDQALMGDNRTAAMVQYYSKYPYFFSKDFGASMVKMANIGVLTGQD 299
+KSG +L +D +L+ D + ++V+ Y+ F KDF + K+ G+ +D
Sbjct: 220 SKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKD 274
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 92/235 (39%), Gaps = 29/235 (12%)
Query: 67 TSTTKGEKNAFPNRNSARGFEVIDAIKANLEKACPATVSCTDILTLVAREAVFLGGGPFW 126
T K E N N GF+ ++ I K P +S D+ +L AV GP
Sbjct: 68 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKI 122
Query: 127 AVPLGRRDGLTASESEANNLPSPFEPLQNITAKFTARGLDLKDVVVLSGGHTIGFAQCLS 186
GR D + + LP + + F ++ ++VV L G H +G
Sbjct: 123 PWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL-- 180
Query: 187 FKNRLFDFSGSGKPDPTLDASLLQSLQSTCPSQADSDTKLVALDSVTTNKFDNIYFQNLV 246
KN + G G + + L L + D KL D+ ++D
Sbjct: 181 -KNS--GYEGGGANNVFTNEFYLNLL--------NEDWKLEKNDA-NNEQWD-------- 220
Query: 247 NKSG--LLQSDQALMGDNRTAAMVQYYSKYPYFFSKDFGASMVKMANIGVLTGQD 299
+KSG +L +D +L+ D + ++V+ Y+ F KDF + K+ G+ +D
Sbjct: 221 SKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKD 275
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 91/231 (39%), Gaps = 29/231 (12%)
Query: 71 KGEKNAFPNRNSARGFEVIDAIKANLEKACPATVSCTDILTLVAREAVFLGGGPFWAVPL 130
K E N N GF+ ++ I K P +S D+ +L AV GP
Sbjct: 77 KKEFNDPSNAGLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRC 131
Query: 131 GRRDGLTASESEANNLPSPFEPLQNITAKFTARGLDLKDVVVLSGGHTIGFAQCLSFKNR 190
GR D + + LP + + F ++ ++VV L G H +G KN
Sbjct: 132 GRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL---KNS 188
Query: 191 LFDFSGSGKPDPTLDASLLQSLQSTCPSQADSDTKLVALDSVTTNKFDNIYFQNLVNKSG 250
+ G G + + L L + D KL D+ ++D +KSG
Sbjct: 189 --GYEGGGANNVFTNEFYLNLL--------NEDWKLEKNDA-NNEQWD--------SKSG 229
Query: 251 --LLQSDQALMGDNRTAAMVQYYSKYPYFFSKDFGASMVKMANIGVLTGQD 299
+L +D +L+ D + ++V+ Y+ F KDF + K+ G+ +D
Sbjct: 230 YMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKD 280
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 92/235 (39%), Gaps = 27/235 (11%)
Query: 67 TSTTKGEKNAFPNRNSARGFEVIDAIKANLEKACPATVSCTDILTLVAREAVFLGGGPFW 126
T K E N N GF+ ++ I K P +S D+ +L AV GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 124
Query: 127 AVPLGRRDGLTASESEANNLPSPFEPLQNITAKFTARGLDLKDVVVLSGGHTIGFAQCLS 186
GR D + + LP + + F ++ ++VV L G H +G
Sbjct: 125 PWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL-- 182
Query: 187 FKNRLFDFSGSGKPDPTLDASLLQSLQSTCPSQADSDTKLVALDSVTTNKFDNIYFQNLV 246
KN ++ G + + L L + D KL D+ ++D
Sbjct: 183 -KNSGYEGPGGAANNVFTNEFYLNLL--------NEDWKLEKNDA-NNEQWD-------- 224
Query: 247 NKSG--LLQSDQALMGDNRTAAMVQYYSKYPYFFSKDFGASMVKMANIGVLTGQD 299
+KSG +L ++ +L+ D + ++V+ Y+ F KDF + K+ G+ +D
Sbjct: 225 SKSGYMMLPTNYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKD 279
>pdb|2GL5|A Chain A, Crystal Structure Of Putative Dehydratase From Salmonella
Thyphimurium
pdb|2GL5|B Chain B, Crystal Structure Of Putative Dehydratase From Salmonella
Thyphimurium
Length = 410
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 238 DNIYFQNL-VNKSGLLQSDQALMGDNRTAAM 267
D+ FQN N SGLL +DQ MG+ R AAM
Sbjct: 181 DDCVFQNRNRNYSGLLLADQLKMGEARIAAM 211
>pdb|4E6M|A Chain A, Crystal Structure Of Putative Dehydratase Protein From
Salmonella Enterica Subsp. Enterica Serovar Typhimurium
(Salmonella Typhimurium)
pdb|4E6M|B Chain B, Crystal Structure Of Putative Dehydratase Protein From
Salmonella Enterica Subsp. Enterica Serovar Typhimurium
(Salmonella Typhimurium)
pdb|4E6M|C Chain C, Crystal Structure Of Putative Dehydratase Protein From
Salmonella Enterica Subsp. Enterica Serovar Typhimurium
(Salmonella Typhimurium)
pdb|4E6M|D Chain D, Crystal Structure Of Putative Dehydratase Protein From
Salmonella Enterica Subsp. Enterica Serovar Typhimurium
(Salmonella Typhimurium)
pdb|4E6M|E Chain E, Crystal Structure Of Putative Dehydratase Protein From
Salmonella Enterica Subsp. Enterica Serovar Typhimurium
(Salmonella Typhimurium)
pdb|4E6M|F Chain F, Crystal Structure Of Putative Dehydratase Protein From
Salmonella Enterica Subsp. Enterica Serovar Typhimurium
(Salmonella Typhimurium)
pdb|4E6M|G Chain G, Crystal Structure Of Putative Dehydratase Protein From
Salmonella Enterica Subsp. Enterica Serovar Typhimurium
(Salmonella Typhimurium)
pdb|4E6M|H Chain H, Crystal Structure Of Putative Dehydratase Protein From
Salmonella Enterica Subsp. Enterica Serovar Typhimurium
(Salmonella Typhimurium)
Length = 423
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 238 DNIYFQNL-VNKSGLLQSDQALMGDNRTAAM 267
D+ FQN N SGLL +DQ MG+ R AAM
Sbjct: 202 DDCVFQNRNRNYSGLLLADQLKMGEARIAAM 232
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 87/252 (34%), Gaps = 61/252 (24%)
Query: 67 TSTTKGEKNAFPNRNSARGFEVIDAIKANLEKACPATVSCTDILTLVAREAVFLGGGPFW 126
T K E N N GF+ ++ I K P +S D+ +L AV GP
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 121
Query: 127 AVPLGRRDGLTASESEANNLPSPFEPLQNITAKFTARGLDLKDVVVLSGGHTIGFAQCLS 186
GR D + + LP + + F ++ ++VV L G H +G
Sbjct: 122 PWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL-- 179
Query: 187 FKNRLFDFSGSGKPDPTLDASLLQSLQSTCPSQADSDTKLVALDSVTTNKFDNIYFQNLV 246
KN SG P N F N Y+ NL+
Sbjct: 180 -KN-------SGYEGPW---------------------------GAANNVFTNEYYLNLL 204
Query: 247 N-----------------KSG--LLQSDQALMGDNRTAAMVQYYSKYPYFFSKDFGASMV 287
N KSG +L +D +L+ D + ++V+ Y+ F KDF +
Sbjct: 205 NEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFE 264
Query: 288 KMANIGVLTGQD 299
K+ G+ +D
Sbjct: 265 KLLENGITFPKD 276
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome
C Peroxidase
Length = 287
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 63/293 (21%), Positives = 107/293 (36%), Gaps = 66/293 (22%)
Query: 31 VWSAIS---NETRMAASLLRLHFH--DCFVKGCDGSVLLDDTSTTKGEKNAFPNRNSARG 85
V++AI+ E + L+RL +H + K + T K E N N G
Sbjct: 22 VYNAIALKIAEKKCGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNG 81
Query: 86 FEVIDAIKANLEKACPATVSCTDILTLVAREAVFLGGGPFWAVPLGRRDGLTASESEANN 145
F+ ++ I K P +S D+ +L AV GP GR D + +
Sbjct: 82 FKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGR 136
Query: 146 LPSPFEPLQNITAKFTARGLDLKDVVVLSGGHTIGFAQCLSFKNRLFDFSGSGKPDPTLD 205
LP + + F ++ ++VV L G H +G
Sbjct: 137 LPDADKDADYVRTFFQRLNMNDREVVALMGAHALG------------------------- 171
Query: 206 ASLLQSLQSTCPSQADSDTKLVALDSVTTNKFDNIYFQNLVN-----------------K 248
T ++ + A ++V TN+F + NL+N K
Sbjct: 172 --------KTHLKRSGYEGPFGAANNVFTNEF----YLNLLNEDWKLEKNDANNEQWDSK 219
Query: 249 SG--LLQSDQALMGDNRTAAMVQYYSKYPYFFSKDFGASMVKMANIGVLTGQD 299
SG +L +D +L+ D + ++V+ Y+ F KDF + K+ G+ +D
Sbjct: 220 SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKD 272
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 62/276 (22%), Positives = 96/276 (34%), Gaps = 63/276 (22%)
Query: 45 LLRLHFH--DCFVKGCDGSVLLDDTSTTKGEKNAFPNRNSARGFEVIDAIKANLEKACPA 102
L+RL FH + K + T K E N N GF+ ++ I K P
Sbjct: 48 LVRLAFHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFPW 103
Query: 103 TVSCTDILTLVAREAVFLGGGPFWAVPLGRRDGLTASESEANNLPSPFEPLQNITAKFTA 162
+S D+ +L AV GP GR D + + LP + + F
Sbjct: 104 -ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQR 162
Query: 163 RGLDLKDVVVLSGGHTIGFAQCLSFKNRLFDFSGSGKPDPTLDASLLQSLQSTCPSQADS 222
++ ++VV L G H +G K L SG P
Sbjct: 163 LNMNDREVVALMGAHALG-------KTHL---KNSGYEGPW------------------- 193
Query: 223 DTKLVALDSVTTNKFDNIYFQNLVN-----------------KSG--LLQSDQALMGDNR 263
N F N ++ NL+N KSG +L +D +L+ D +
Sbjct: 194 --------GAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPK 245
Query: 264 TAAMVQYYSKYPYFFSKDFGASMVKMANIGVLTGQD 299
++V+ Y+ F KDF + K+ G+ +D
Sbjct: 246 YLSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKD 281
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol
Length = 296
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 53/248 (21%), Positives = 84/248 (33%), Gaps = 61/248 (24%)
Query: 71 KGEKNAFPNRNSARGFEVIDAIKANLEKACPATVSCTDILTLVAREAVFLGGGPFWAVPL 130
K E N N GF+ ++ I K P +S D+ +L AV GP
Sbjct: 76 KKEFNDPSNAGLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEWQGPKIPWRC 130
Query: 131 GRRDGLTASESEANNLPSPFEPLQNITAKFTARGLDLKDVVVLSGGHTIGFAQCLSFKNR 190
GR D + + LP + + F ++ ++VV L G H +G
Sbjct: 131 GRVDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL------ 184
Query: 191 LFDFSGSGKPDPTLDASLLQSLQSTCPSQADSDTKLVALDSVTTNKFDNIYFQNLVN--- 247
SG P N F N ++ NL+N
Sbjct: 185 ----KNSGYEGPW---------------------------GAANNVFTNEFYLNLLNEDW 213
Query: 248 --------------KSG--LLQSDQALMGDNRTAAMVQYYSKYPYFFSKDFGASMVKMAN 291
KSG +L +D +L+ D + ++V+ Y+ F KDF + K+
Sbjct: 214 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLE 273
Query: 292 IGVLTGQD 299
G+ +D
Sbjct: 274 NGITFPKD 281
>pdb|1K3R|A Chain A, Crystal Structure Of The Methyltransferase With A Knot
From Methanobacterium Thermoautotrophicum
pdb|1K3R|B Chain B, Crystal Structure Of The Methyltransferase With A Knot
From Methanobacterium Thermoautotrophicum
Length = 268
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 79 NRNSARGFEVI--DAIKANLEKACPATVSCTDILTLV--AREAVFLGGGPFWAVP 129
RN A + + D + A A P T ++ T + AREA L GGP+ +P
Sbjct: 171 RRNLAESLKTVGADVVVATSRNASPITSILDEVKTRMRGAREAAILFGGPYKGLP 225
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 86/248 (34%), Gaps = 61/248 (24%)
Query: 71 KGEKNAFPNRNSARGFEVIDAIKANLEKACPATVSCTDILTLVAREAVFLGGGPFWAVPL 130
K E N N GF+ ++ I K P +S D+ +L AV GP
Sbjct: 74 KKEFNDPSNAGLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRC 128
Query: 131 GRRDGLTASESEANNLPSPFEPLQNITAKFTARGLDLKDVVVLSGGHTIGFAQCLSFKNR 190
GR D + + LP + + F ++ ++VV L G H +G K
Sbjct: 129 GRVDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALG-------KTH 181
Query: 191 LFDFSGSGKPDPTLDASLLQSLQSTCPSQADSDTKLVALDSVTTNKFDNIYFQNLVN--- 247
L SG P N F N ++ NL+N
Sbjct: 182 L---KNSGYEGPW---------------------------GAANNVFTNEFYLNLLNEDW 211
Query: 248 --------------KSG--LLQSDQALMGDNRTAAMVQYYSKYPYFFSKDFGASMVKMAN 291
KSG +L +D +L+ D + ++V+ Y+ F KDF + K+
Sbjct: 212 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLE 271
Query: 292 IGVLTGQD 299
G+ +D
Sbjct: 272 DGITFPKD 279
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 56/252 (22%), Positives = 87/252 (34%), Gaps = 61/252 (24%)
Query: 67 TSTTKGEKNAFPNRNSARGFEVIDAIKANLEKACPATVSCTDILTLVAREAVFLGGGPFW 126
T K E N N GF+ ++ I K P +S D+ +L AV GP
Sbjct: 69 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKI 123
Query: 127 AVPLGRRDGLTASESEANNLPSPFEPLQNITAKFTARGLDLKDVVVLSGGHTIGFAQCLS 186
GR D + + LP + + F ++ ++VV L G H +G
Sbjct: 124 PWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALG------ 177
Query: 187 FKNRLFDFSGSGKPDPTLDASLLQSLQSTCPSQADSDTKLVALDSVTTNKFDNIYFQNLV 246
K L SG P N F N ++ NL+
Sbjct: 178 -KTHL---KNSGYEGPW---------------------------GAANNVFTNEFYLNLL 206
Query: 247 N-----------------KSG--LLQSDQALMGDNRTAAMVQYYSKYPYFFSKDFGASMV 287
N KSG +L +D +L+ D + ++V+ Y+ F KDF +
Sbjct: 207 NEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFE 266
Query: 288 KMANIGVLTGQD 299
K+ G+ +D
Sbjct: 267 KLLENGITFPKD 278
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 85/252 (33%), Gaps = 61/252 (24%)
Query: 67 TSTTKGEKNAFPNRNSARGFEVIDAIKANLEKACPATVSCTDILTLVAREAVFLGGGPFW 126
T K E N N GF+ ++ I K P +S D+ +L AV GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKI 124
Query: 127 AVPLGRRDGLTASESEANNLPSPFEPLQNITAKFTARGLDLKDVVVLSGGHTIGFAQCLS 186
GR D + + LP + + F ++ ++VV L G H +G
Sbjct: 125 PWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL-- 182
Query: 187 FKNRLFDFSGSGKPDPTLDASLLQSLQSTCPSQADSDTKLVALDSVTTNKFDNIYFQNLV 246
SG P N F N ++ NL+
Sbjct: 183 --------KNSGYEGPW---------------------------GAANNVFTNEFYLNLL 207
Query: 247 N-----------------KSG--LLQSDQALMGDNRTAAMVQYYSKYPYFFSKDFGASMV 287
N KSG +L +D +L+ D + ++V+ Y+ F KDF +
Sbjct: 208 NEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFE 267
Query: 288 KMANIGVLTGQD 299
K+ G+ +D
Sbjct: 268 KLLENGITFPKD 279
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 85/252 (33%), Gaps = 61/252 (24%)
Query: 67 TSTTKGEKNAFPNRNSARGFEVIDAIKANLEKACPATVSCTDILTLVAREAVFLGGGPFW 126
T K E N N GF+ ++ I K P +S D+ +L AV GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKI 124
Query: 127 AVPLGRRDGLTASESEANNLPSPFEPLQNITAKFTARGLDLKDVVVLSGGHTIGFAQCLS 186
GR D + + LP + + F ++ ++VV L G H +G
Sbjct: 125 PWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL-- 182
Query: 187 FKNRLFDFSGSGKPDPTLDASLLQSLQSTCPSQADSDTKLVALDSVTTNKFDNIYFQNLV 246
SG P N F N ++ NL+
Sbjct: 183 --------KNSGYEGPW---------------------------GAANNVFTNEFYLNLL 207
Query: 247 N-----------------KSG--LLQSDQALMGDNRTAAMVQYYSKYPYFFSKDFGASMV 287
N KSG +L +D +L+ D + ++V+ Y+ F KDF +
Sbjct: 208 NENWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFE 267
Query: 288 KMANIGVLTGQD 299
K+ G+ +D
Sbjct: 268 KLLENGITFPKD 279
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 86/248 (34%), Gaps = 61/248 (24%)
Query: 71 KGEKNAFPNRNSARGFEVIDAIKANLEKACPATVSCTDILTLVAREAVFLGGGPFWAVPL 130
K E N N GF+ ++ I K P +S D+ +L AV GP
Sbjct: 74 KKEFNDPSNAGLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRC 128
Query: 131 GRRDGLTASESEANNLPSPFEPLQNITAKFTARGLDLKDVVVLSGGHTIGFAQCLSFKNR 190
GR D + + LP + + F ++ ++VV L G H +G K
Sbjct: 129 GRVDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALG-------KTH 181
Query: 191 LFDFSGSGKPDPTLDASLLQSLQSTCPSQADSDTKLVALDSVTTNKFDNIYFQNLVN--- 247
L SG P N F N ++ NL+N
Sbjct: 182 L---KNSGYEGPW---------------------------GAANNVFTNEFYLNLLNEDW 211
Query: 248 --------------KSG--LLQSDQALMGDNRTAAMVQYYSKYPYFFSKDFGASMVKMAN 291
KSG +L +D +L+ D + ++V+ Y+ F KDF + K+
Sbjct: 212 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLE 271
Query: 292 IGVLTGQD 299
G+ +D
Sbjct: 272 NGITFPKD 279
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site
pdb|2X08|A Chain A, Cytochrome C Peroxidase: Ascorbate Bound To The Engineered
Ascorbate Binding Site
Length = 293
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 90/252 (35%), Gaps = 61/252 (24%)
Query: 67 TSTTKGEKNAFPNRNSARGFEVIDAIKANLEKACPATVSCTDILTLVAREAVFLGGGPFW 126
T K E N N GF+ ++ I K P +S D+ +L AV GP
Sbjct: 69 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKI 123
Query: 127 AVPLGRRDGLTASESEANNLPSPFEPLQNITAKFTARGLDLKDVVVLSGGHTIGFAQCLS 186
GR D + + LP + + F ++ ++VV L G H +G
Sbjct: 124 PWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALG------ 177
Query: 187 FKNRLFDFSGSGKPDPTLDASLLQSLQSTCPSQADSDTKLVALDSVTTNKFDNIYFQNLV 246
T ++ + A ++V TN+F + NL+
Sbjct: 178 ---------------------------KTHLKRSGYEGPFGAANNVFTNEF----YLNLL 206
Query: 247 N-----------------KSG--LLQSDQALMGDNRTAAMVQYYSKYPYFFSKDFGASMV 287
N KSG +L +D +L+ D + ++V+ Y+ F KDF +
Sbjct: 207 NEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDRFFKDFSKAFE 266
Query: 288 KMANIGVLTGQD 299
K+ G+ +D
Sbjct: 267 KLLENGITFPKD 278
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 86/248 (34%), Gaps = 61/248 (24%)
Query: 71 KGEKNAFPNRNSARGFEVIDAIKANLEKACPATVSCTDILTLVAREAVFLGGGPFWAVPL 130
K E N N GF+ ++ I K P +S D+ +L AV GP
Sbjct: 74 KKEFNDPSNAGLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRC 128
Query: 131 GRRDGLTASESEANNLPSPFEPLQNITAKFTARGLDLKDVVVLSGGHTIGFAQCLSFKNR 190
GR D + + LP + + F ++ ++VV L G H +G K
Sbjct: 129 GRVDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALG-------KTH 181
Query: 191 LFDFSGSGKPDPTLDASLLQSLQSTCPSQADSDTKLVALDSVTTNKFDNIYFQNLVN--- 247
L SG P N F N ++ NL+N
Sbjct: 182 L---KNSGYEGPW---------------------------GAANNVFTNEFYLNLLNEDW 211
Query: 248 --------------KSG--LLQSDQALMGDNRTAAMVQYYSKYPYFFSKDFGASMVKMAN 291
KSG +L +D +L+ D + ++V+ Y+ F KDF + K+
Sbjct: 212 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLE 271
Query: 292 IGVLTGQD 299
G+ +D
Sbjct: 272 NGITFPKD 279
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 60/274 (21%), Positives = 93/274 (33%), Gaps = 61/274 (22%)
Query: 45 LLRLHFHDCFVKGCDGSVLLDDTSTTKGEKNAFPNRNSARGFEVIDAIKANLEKACPATV 104
LL H + K + T K E N N GF+ ++ I K P +
Sbjct: 50 LLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFPW-I 104
Query: 105 SCTDILTLVAREAVFLGGGPFWAVPLGRRDGLTASESEANNLPSPFEPLQNITAKFTARG 164
S D+ +L AV GP GR D + + LP + + F
Sbjct: 105 SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLN 164
Query: 165 LDLKDVVVLSGGHTIGFAQCLSFKNRLFDFSGSGKPDPTLDASLLQSLQSTCPSQADSDT 224
++ ++VV L G H +G K L SG P
Sbjct: 165 MNDREVVALMGAHALG-------KTHL---KNSGYEGPW--------------------- 193
Query: 225 KLVALDSVTTNKFDNIYFQNLVN-----------------KSG--LLQSDQALMGDNRTA 265
N F N ++ NL+N KSG +L +D +L+ D +
Sbjct: 194 ------GAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYL 247
Query: 266 AMVQYYSKYPYFFSKDFGASMVKMANIGVLTGQD 299
++V+ Y+ F KDF + K+ G+ +D
Sbjct: 248 SIVKEYANDQDKFFKDFSKAFEKLLENGITFPKD 281
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 85/252 (33%), Gaps = 61/252 (24%)
Query: 67 TSTTKGEKNAFPNRNSARGFEVIDAIKANLEKACPATVSCTDILTLVAREAVFLGGGPFW 126
T K E N N GF+ ++ I K P +S D+ +L AV GP
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 121
Query: 127 AVPLGRRDGLTASESEANNLPSPFEPLQNITAKFTARGLDLKDVVVLSGGHTIGFAQCLS 186
GR D + + LP + + F ++ ++VV L G H +G
Sbjct: 122 PWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALKGAHALGKTHL-- 179
Query: 187 FKNRLFDFSGSGKPDPTLDASLLQSLQSTCPSQADSDTKLVALDSVTTNKFDNIYFQNLV 246
SG P N F N ++ NL+
Sbjct: 180 --------KNSGYEGPW---------------------------GAANNVFTNEFYLNLL 204
Query: 247 N-----------------KSG--LLQSDQALMGDNRTAAMVQYYSKYPYFFSKDFGASMV 287
N KSG +L +D +L+ D + ++V+ Y+ F KDF +
Sbjct: 205 NEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFE 264
Query: 288 KMANIGVLTGQD 299
K+ G+ +D
Sbjct: 265 KLLENGITFPKD 276
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,971,209
Number of Sequences: 62578
Number of extensions: 350959
Number of successful extensions: 1077
Number of sequences better than 100.0: 111
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 937
Number of HSP's gapped (non-prelim): 153
length of query: 310
length of database: 14,973,337
effective HSP length: 99
effective length of query: 211
effective length of database: 8,778,115
effective search space: 1852182265
effective search space used: 1852182265
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)